Query 039930
Match_columns 245
No_of_seqs 116 out of 169
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 04:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oh1_A Staphostatin A; cystein 40.0 21 0.00072 28.2 3.1 31 67-100 51-81 (109)
2 4h61_A Mediator of RNA polymer 29.1 11 0.00038 31.8 -0.1 33 92-131 67-99 (175)
3 3u65_B TP33 protein; tetratric 25.9 26 0.00091 30.9 1.7 21 95-115 227-247 (328)
4 3fxb_A Trap dicarboxylate tran 25.5 41 0.0014 29.5 2.9 20 96-115 225-244 (326)
5 3cqb_A Probable protease HTPX 24.1 35 0.0012 25.6 1.9 34 81-114 46-84 (107)
6 2pfz_A Putative exported prote 22.7 34 0.0012 29.3 1.8 20 96-115 208-227 (301)
7 2xwv_A Sialic acid-binding per 22.7 34 0.0012 29.7 1.8 18 98-115 216-233 (312)
8 2pfy_A Putative exported prote 22.0 35 0.0012 29.1 1.7 20 96-115 209-228 (301)
9 2hpg_A ABC transporter, peripl 21.3 37 0.0013 29.8 1.7 21 95-115 228-248 (327)
10 2ipq_X Hypothetical protein ST 20.3 60 0.002 26.3 2.6 31 72-104 84-117 (135)
11 4a3n_A Transcription factor SO 20.1 33 0.0011 23.1 0.9 15 103-117 39-53 (71)
No 1
>1oh1_A Staphostatin A; cysteine proteinase inhibitor, cysteine protease inhibitor, staphopain inhibitor, NOT similar to cystatins; NMR {Staphylococcus aureus} SCOP: b.61.2.2
Probab=40.01 E-value=21 Score=28.21 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=25.0
Q ss_pred eeeeeeeccCceeeeEeeeCCCCCcceeeeeeee
Q 039930 67 THHYVSRLNQDFLQCAVYDSDDSTARLIGVEYIV 100 (245)
Q Consensus 67 AhHYC~~lneD~~QCliYDs~~~~ArLIGIEYiI 100 (245)
..--|+-+|+|-+|-++|.-|.++ |=||-||
T Consensus 51 p~YiCk~INedsr~iiL~N~dN~n---IiIEiii 81 (109)
T 1oh1_A 51 SDYICKYINTEHKQLTLYNKNNSS---IVIEIFI 81 (109)
T ss_dssp CCEEEEEEETTTTEEEEEETTTSC---EEEEEEC
T ss_pred chhhhhhhcccceEEEEecCCCCc---EEEEEEE
Confidence 345799999999999999888776 3378766
No 2
>4h61_A Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 2.70A {Schizosaccharomyces pombe} PDB: 4h63_F
Probab=29.10 E-value=11 Score=31.76 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=24.8
Q ss_pred ceeeeeeeecHHHHhhCChhhhhcccccceeeccceeecC
Q 039930 92 RLIGVEYIVSDKIFEALPLEEQKLWHSHAYEVKSGLWVNP 131 (245)
Q Consensus 92 rLIGIEYiISe~lf~tLP~eEkklWHsH~yEVkSG~Lv~P 131 (245)
++.||||+|... .|--||+.++.+-.|+.=+.|
T Consensus 67 ~m~GiEy~l~~~-------~~p~lfvI~Kq~R~~~~~~~~ 99 (175)
T 4h61_A 67 RLTGIQFVIIHE-------RPPFLWVIQKQNRLNENEVKP 99 (175)
T ss_dssp TCCEEEEEEEEE-------ETTTEEEEEEEEECSSSCEEE
T ss_pred cCCCceEEEeec-------CCCceEEEEEEEEcCCCcceE
Confidence 678999999742 345699999998887765544
No 3
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=25.88 E-value=26 Score=30.93 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=18.4
Q ss_pred eeeeeecHHHHhhCChhhhhc
Q 039930 95 GVEYIVSDKIFEALPLEEQKL 115 (245)
Q Consensus 95 GIEYiISe~lf~tLP~eEkkl 115 (245)
..-.+||.+.|++||+++|+.
T Consensus 227 ~~~~~~n~~~w~~L~~e~q~~ 247 (328)
T 3u65_B 227 VIGMLISDGSWARIPSRYHDA 247 (328)
T ss_dssp EEEEEEEHHHHTTSCGGGHHH
T ss_pred ceEEEEcHHHHhcCCHHHHHH
Confidence 356899999999999999885
No 4
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=25.55 E-value=41 Score=29.49 Aligned_cols=20 Identities=20% Similarity=0.508 Sum_probs=17.9
Q ss_pred eeeeecHHHHhhCChhhhhc
Q 039930 96 VEYIVSDKIFEALPLEEQKL 115 (245)
Q Consensus 96 IEYiISe~lf~tLP~eEkkl 115 (245)
.-++||.+.|++||+++|+.
T Consensus 225 ~~~~~n~~~w~~L~~e~q~~ 244 (326)
T 3fxb_A 225 TAVMANKDFYDGLSAEDQQL 244 (326)
T ss_dssp EEEEEEHHHHHHSCHHHHHH
T ss_pred eEEEEeHHHHhcCCHHHHHH
Confidence 45789999999999999985
No 5
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=24.09 E-value=35 Score=25.62 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=26.8
Q ss_pred eEeeeCCCCCcceeeee-----eeecHHHHhhCChhhhh
Q 039930 81 CAVYDSDDSTARLIGVE-----YIVSDKIFEALPLEEQK 114 (245)
Q Consensus 81 CliYDs~~~~ArLIGIE-----YiISe~lf~tLP~eEkk 114 (245)
-.+.|++.+||=.+|.- =+|+..|.+.|+++|-.
T Consensus 46 v~v~~~~~~NAf~~g~~~~~~~i~v~~gLl~~l~~~El~ 84 (107)
T 3cqb_A 46 VAIYDSADINAFATGAKRDDSLVAVSTGLLHNMTRDEAE 84 (107)
T ss_dssp EEEECCSSEEEEEECCC--CCEEEEEHHHHHHSCHHHHH
T ss_pred EEEEECCCcCEEEEecCCCCCEEEEcHHHHhhCCHHHHH
Confidence 45677888899999864 25788899999999854
No 6
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=22.68 E-value=34 Score=29.29 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.7
Q ss_pred eeeeecHHHHhhCChhhhhc
Q 039930 96 VEYIVSDKIFEALPLEEQKL 115 (245)
Q Consensus 96 IEYiISe~lf~tLP~eEkkl 115 (245)
.-++||.+.|++||++.|+.
T Consensus 208 ~~~~~n~~~~~~L~~~~q~~ 227 (301)
T 2pfz_A 208 NAVLVNKKAFDALDPATQQA 227 (301)
T ss_dssp EEEEEEHHHHHTSCHHHHHH
T ss_pred eEEEEcHHHHhcCCHHHHHH
Confidence 45889999999999999985
No 7
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=22.65 E-value=34 Score=29.75 Aligned_cols=18 Identities=39% Similarity=0.772 Sum_probs=17.0
Q ss_pred eeecHHHHhhCChhhhhc
Q 039930 98 YIVSDKIFEALPLEEQKL 115 (245)
Q Consensus 98 YiISe~lf~tLP~eEkkl 115 (245)
++||.+.|++||++.|++
T Consensus 216 ~~~n~~~~~~L~~~~q~~ 233 (312)
T 2xwv_A 216 YLVSNETYKELPEDLQKV 233 (312)
T ss_dssp EEEEHHHHTTSCHHHHHH
T ss_pred EEEeHHHHhhCCHHHHHH
Confidence 789999999999999986
No 8
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=22.01 E-value=35 Score=29.12 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.8
Q ss_pred eeeeecHHHHhhCChhhhhc
Q 039930 96 VEYIVSDKIFEALPLEEQKL 115 (245)
Q Consensus 96 IEYiISe~lf~tLP~eEkkl 115 (245)
.-++||.+.|++||++.|+.
T Consensus 209 ~~~~~n~~~~~~L~~~~q~~ 228 (301)
T 2pfy_A 209 SFVIANKRAFQRLPAEVRQA 228 (301)
T ss_dssp EEEEEEHHHHHHSCHHHHHH
T ss_pred eeEEEcHHHHhcCCHHHHHH
Confidence 45889999999999999985
No 9
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=21.30 E-value=37 Score=29.79 Aligned_cols=21 Identities=43% Similarity=0.363 Sum_probs=18.6
Q ss_pred eeeeeecHHHHhhCChhhhhc
Q 039930 95 GVEYIVSDKIFEALPLEEQKL 115 (245)
Q Consensus 95 GIEYiISe~lf~tLP~eEkkl 115 (245)
..-++||.+.|++||++.|++
T Consensus 228 ~~~~~~n~~~~~~L~~e~q~~ 248 (327)
T 2hpg_A 228 INFEIVSADWFNSLPKEYQKI 248 (327)
T ss_dssp EEEEEEEHHHHHHSCHHHHHH
T ss_pred ceEEEEeHHHHhcCCHHHHHH
Confidence 356899999999999999986
No 10
>2ipq_X Hypothetical protein STY4665; structural genomics, unknown function, PSI, protein structur initiative; 2.20A {Salmonella typhi} SCOP: a.4.5.74
Probab=20.28 E-value=60 Score=26.26 Aligned_cols=31 Identities=23% Similarity=0.544 Sum_probs=23.7
Q ss_pred eeccCceeeeEeeeCCCCC---cceeeeeeeecHHH
Q 039930 72 SRLNQDFLQCAVYDSDDST---ARLIGVEYIVSDKI 104 (245)
Q Consensus 72 ~~lneD~~QCliYDs~~~~---ArLIGIEYiISe~l 104 (245)
..=+..+..|-||+++... .||-| |+|....
T Consensus 84 ~~~g~ni~~~~vy~gprk~g~~~~L~G--YLi~~~~ 117 (135)
T 2ipq_X 84 VSDSRRFWQCCLYEEPGGRGRYKKLTG--YLIKMSE 117 (135)
T ss_dssp CBTTBCCEEEEEEEETTTEEEEEEEEE--EEEEHHH
T ss_pred cCCCccEEEEEEeeCCCcCCCcceEEE--EEEcCch
Confidence 4446788999999999855 77886 8885553
No 11
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=20.06 E-value=33 Score=23.11 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.7
Q ss_pred HHHhhCChhhhhccc
Q 039930 103 KIFEALPLEEQKLWH 117 (245)
Q Consensus 103 ~lf~tLP~eEkklWH 117 (245)
+.|++|+++||+-|-
T Consensus 39 ~~Wk~ls~~eK~~y~ 53 (71)
T 4a3n_A 39 KSWKALTLAEKRPFV 53 (71)
T ss_dssp HHHHHSCHHHHHHHH
T ss_pred HHHhcCCHHHHHHHH
Confidence 469999999999774
Done!