Query 039930
Match_columns 245
No_of_seqs 116 out of 169
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 04:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039930.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039930hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oh1a_ b.61.2.2 (A:) Staphost 39.2 10 0.00075 28.2 3.1 30 68-100 52-81 (109)
2 d1sdwa1 b.121.1.2 (A:45-198) P 35.2 13 0.00092 28.2 3.2 41 74-124 30-71 (154)
3 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 30.3 7.6 0.00055 26.4 1.0 16 103-118 39-54 (80)
4 d1u5sb1 g.39.1.3 (B:72-102) Pi 28.8 3.3 0.00024 25.0 -1.0 20 136-155 10-29 (31)
5 d2lefa_ a.21.1.1 (A:) Lymphoid 24.6 11 0.00081 25.6 1.0 17 102-118 38-54 (86)
6 d1j46a_ a.21.1.1 (A:) SRY {Hum 22.7 13 0.00093 25.2 1.0 15 103-117 41-55 (85)
7 d1v63a_ a.21.1.1 (A:) Nucleola 20.6 13 0.00098 25.5 0.7 16 103-118 43-58 (101)
8 d1wgfa_ a.21.1.1 (A:) Nucleola 20.5 15 0.0011 24.8 0.9 15 103-117 57-71 (90)
9 d2ftxb1 d.300.1.2 (B:155-213) 20.0 12 0.00091 25.2 0.4 32 77-108 21-57 (59)
10 d1i11a_ a.21.1.1 (A:) Sox-5 {M 19.2 15 0.0011 23.9 0.7 15 103-117 39-53 (70)
No 1
>d1oh1a_ b.61.2.2 (A:) Staphostatin A (SAV1910, SA1726) {Staphylococcus aureus [TaxId: 1280]}
Probab=39.25 E-value=10 Score=28.16 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=24.6
Q ss_pred eeeeeeccCceeeeEeeeCCCCCcceeeeeeee
Q 039930 68 HHYVSRLNQDFLQCAVYDSDDSTARLIGVEYIV 100 (245)
Q Consensus 68 hHYC~~lneD~~QCliYDs~~~~ArLIGIEYiI 100 (245)
.--|+-+|+|-+|-++|.-|.++ |=||-||
T Consensus 52 ~YiCk~INedsr~iiL~N~dN~n---IiIEiii 81 (109)
T d1oh1a_ 52 DYICKYINTEHKQLTLYNKNNSS---IVIEIFI 81 (109)
T ss_dssp CEEEEEEETTTTEEEEEETTTSC---EEEEEEC
T ss_pred hhhhhhhcccceeEEEecCCCCc---EEEEEEE
Confidence 45699999999999999888776 3478766
No 2
>d1sdwa1 b.121.1.2 (A:45-198) Peptidylglycine alpha-hydroxylating monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=35.15 E-value=13 Score=28.15 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=30.6
Q ss_pred ccCceeeeEeeeCC-CCCcceeeeeeeecHHHHhhCChhhhhcccccceeec
Q 039930 74 LNQDFLQCAVYDSD-DSTARLIGVEYIVSDKIFEALPLEEQKLWHSHAYEVK 124 (245)
Q Consensus 74 lneD~~QCliYDs~-~~~ArLIGIEYiISe~lf~tLP~eEkklWHsH~yEVk 124 (245)
-+.|...|.++|-+ ..+..++|+|.++.+++ .=|.=.|+..
T Consensus 30 ~~~d~Y~C~~~~~p~~~~~~i~~~ep~~n~~~----------VHH~lly~~~ 71 (154)
T d1sdwa1 30 KESDTYFCMSMRLPVDEEAFVIDFKPRASMDT----------VHHMLLFGCN 71 (154)
T ss_dssp SSSSEEEEEEEECSCSSCEEEEEEEEECCTTT----------EEEEEEEEES
T ss_pred CCceeEEEEEecCCCCCceeEEEEEEcCCCCe----------eEEEEEEEcC
Confidence 45788999999987 56889999999766543 5555566653
No 3
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.30 E-value=7.6 Score=26.38 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=13.6
Q ss_pred HHHhhCChhhhhcccc
Q 039930 103 KIFEALPLEEQKLWHS 118 (245)
Q Consensus 103 ~lf~tLP~eEkklWHs 118 (245)
..|+.|+++||+.|.-
T Consensus 39 ~~W~~l~~eeK~~y~~ 54 (80)
T d1gt0d_ 39 AEWKLLSETEKRPFID 54 (80)
T ss_dssp HHHTTSCHHHHHHHHH
T ss_pred HHHCcCCHHHHHHHHH
Confidence 4599999999999863
No 4
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.77 E-value=3.3 Score=24.97 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=14.9
Q ss_pred cccchHHHHHhhccCceEEe
Q 039930 136 MIGRPELDNMAKTYGKFWCT 155 (245)
Q Consensus 136 ~aE~~~M~~l~~tYGKt~Ht 155 (245)
.-.+....++++--||+||.
T Consensus 10 ~C~~PI~~~~vtAlgk~WHp 29 (31)
T d1u5sb1 10 ACRRPIEGRVVNAMGKQWHV 29 (31)
T ss_dssp TTTEECCSCEECCTTSBEET
T ss_pred hcCCchhhhHhhhhccccCC
Confidence 33555666788999999994
No 5
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.61 E-value=11 Score=25.60 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.3
Q ss_pred HHHHhhCChhhhhcccc
Q 039930 102 DKIFEALPLEEQKLWHS 118 (245)
Q Consensus 102 e~lf~tLP~eEkklWHs 118 (245)
-..|++|+++||..|.-
T Consensus 38 g~~Wk~ls~~eK~~y~~ 54 (86)
T d2lefa_ 38 GRRWHALSREEQAKYYE 54 (86)
T ss_dssp HHHHTTSCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 46799999999998853
No 6
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.68 E-value=13 Score=25.21 Aligned_cols=15 Identities=13% Similarity=0.096 Sum_probs=13.4
Q ss_pred HHHhhCChhhhhccc
Q 039930 103 KIFEALPLEEQKLWH 117 (245)
Q Consensus 103 ~lf~tLP~eEkklWH 117 (245)
..|.+|+++||..|.
T Consensus 41 ~~W~~L~~eeK~~y~ 55 (85)
T d1j46a_ 41 YQWKMLTEAEKWPFF 55 (85)
T ss_dssp HHHTTSCHHHHHHHH
T ss_pred HHHhcCCHHHHHHHH
Confidence 789999999999874
No 7
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.56 E-value=13 Score=25.50 Aligned_cols=16 Identities=0% Similarity=0.241 Sum_probs=13.8
Q ss_pred HHHhhCChhhhhcccc
Q 039930 103 KIFEALPLEEQKLWHS 118 (245)
Q Consensus 103 ~lf~tLP~eEkklWHs 118 (245)
+.|+.|+++||+.|.-
T Consensus 43 ~~Wk~ls~~eK~~Y~~ 58 (101)
T d1v63a_ 43 SRWQRISQSQKEHYKK 58 (101)
T ss_dssp HHHTTSCHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHH
Confidence 5799999999998864
No 8
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.47 E-value=15 Score=24.80 Aligned_cols=15 Identities=7% Similarity=0.381 Sum_probs=13.3
Q ss_pred HHHhhCChhhhhccc
Q 039930 103 KIFEALPLEEQKLWH 117 (245)
Q Consensus 103 ~lf~tLP~eEkklWH 117 (245)
..|+.|+++||+.|.
T Consensus 57 ~~W~~Ls~~eK~~Y~ 71 (90)
T d1wgfa_ 57 RMWNDLSEKKKAKYK 71 (90)
T ss_dssp HHHHHSCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 479999999999885
No 9
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.99 E-value=12 Score=25.17 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=25.8
Q ss_pred ceeeeEeeeCCCCCcceeeee-----eeecHHHHhhC
Q 039930 77 DFLQCAVYDSDDSTARLIGVE-----YIVSDKIFEAL 108 (245)
Q Consensus 77 D~~QCliYDs~~~~ArLIGIE-----YiISe~lf~tL 108 (245)
|--||+|++++..+-.+.-|+ |.+|--+|++|
T Consensus 21 e~~k~iI~n~~~g~v~vv~id~k~S~fF~tnYiWd~L 57 (59)
T d2ftxb1 21 ENDQVLINRKNDGNIDILPLDNNLSDFYKTKYIWERL 57 (59)
T ss_dssp GGTEEEECSSCSSCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCcEEEEEcCCcccHHHHHHHHHHHh
Confidence 446999999999999888885 67777777765
No 10
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.17 E-value=15 Score=23.91 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=12.8
Q ss_pred HHHhhCChhhhhccc
Q 039930 103 KIFEALPLEEQKLWH 117 (245)
Q Consensus 103 ~lf~tLP~eEkklWH 117 (245)
..|++|+++||+.|.
T Consensus 39 ~~Wk~ls~~eK~~y~ 53 (70)
T d1i11a_ 39 SRWKAMTNLEKQPYY 53 (70)
T ss_dssp HHHTTSCSGGGHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 469999999998874
Done!