Query 039931
Match_columns 783
No_of_seqs 859 out of 4582
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 03:28:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.9E-84 6.3E-89 757.3 70.1 663 29-742 64-731 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.7E-80 3.6E-85 725.7 69.9 638 99-770 81-720 (857)
3 PLN03218 maturation of RBCL 1; 100.0 4.2E-73 9E-78 647.9 71.0 546 102-671 368-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 2.4E-71 5.1E-76 633.5 71.3 546 136-706 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.9E-66 4.1E-71 592.9 51.0 512 136-671 84-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.8E-63 3.9E-68 568.4 52.2 476 248-739 84-565 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-37 4.2E-42 372.0 89.5 706 29-763 138-859 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-37 3.5E-42 372.6 88.3 711 25-764 168-894 (899)
9 PRK11447 cellulose synthase su 100.0 2.6E-26 5.6E-31 275.5 74.5 588 89-701 47-702 (1157)
10 PRK11447 cellulose synthase su 100.0 1E-25 2.2E-30 270.4 74.5 573 109-700 117-741 (1157)
11 KOG2002 TPR-containing nuclear 100.0 4.6E-24 9.9E-29 226.8 57.3 542 7-559 154-744 (1018)
12 PRK09782 bacteriophage N4 rece 100.0 2.7E-22 5.8E-27 229.5 71.9 580 117-742 57-713 (987)
13 PRK09782 bacteriophage N4 rece 100.0 1.1E-21 2.4E-26 224.4 72.3 612 83-740 57-745 (987)
14 KOG2002 TPR-containing nuclear 99.9 2.7E-18 5.9E-23 183.3 68.1 575 120-711 146-757 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 6.2E-21 1.3E-25 192.7 42.3 443 254-714 51-499 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 3E-20 6.4E-25 187.9 41.4 433 179-636 53-489 (966)
17 PRK11788 tetratricopeptide rep 99.9 8.5E-20 1.8E-24 195.8 37.1 299 331-636 45-353 (389)
18 PRK11788 tetratricopeptide rep 99.9 1.7E-19 3.6E-24 193.6 36.7 301 257-564 41-351 (389)
19 TIGR00990 3a0801s09 mitochondr 99.9 2.6E-17 5.5E-22 186.0 52.9 431 107-594 130-570 (615)
20 TIGR00990 3a0801s09 mitochondr 99.9 6E-17 1.3E-21 183.0 53.3 428 141-630 129-571 (615)
21 PRK15174 Vi polysaccharide exp 99.8 2.5E-16 5.5E-21 177.1 48.5 332 254-595 45-381 (656)
22 PRK15174 Vi polysaccharide exp 99.8 1.9E-16 4.2E-21 178.1 47.1 335 106-456 44-382 (656)
23 PRK10049 pgaA outer membrane p 99.8 3.7E-16 8E-21 179.7 47.9 417 101-559 12-455 (765)
24 PRK10049 pgaA outer membrane p 99.8 7.2E-16 1.6E-20 177.4 49.7 426 136-611 12-470 (765)
25 KOG2076 RNA polymerase III tra 99.8 3.7E-13 8.1E-18 143.7 62.2 623 95-731 164-891 (895)
26 KOG2076 RNA polymerase III tra 99.8 8.6E-14 1.9E-18 148.5 56.2 614 109-739 144-853 (895)
27 PRK14574 hmsH outer membrane p 99.8 3E-14 6.6E-19 160.4 56.1 463 104-606 34-522 (822)
28 KOG0495 HAT repeat protein [RN 99.8 5.8E-13 1.3E-17 136.7 59.4 560 118-716 265-862 (913)
29 KOG4422 Uncharacterized conser 99.8 3E-14 6.4E-19 138.9 45.4 325 102-454 114-461 (625)
30 PRK14574 hmsH outer membrane p 99.8 7.1E-14 1.5E-18 157.5 55.8 449 149-637 44-518 (822)
31 KOG4422 Uncharacterized conser 99.8 1.4E-13 3E-18 134.3 44.4 324 139-490 116-462 (625)
32 KOG2003 TPR repeat-containing 99.8 8.2E-15 1.8E-19 143.4 34.1 454 252-716 202-705 (840)
33 KOG0495 HAT repeat protein [RN 99.7 6.9E-11 1.5E-15 121.7 61.3 518 158-711 365-891 (913)
34 KOG2003 TPR repeat-containing 99.7 9.9E-14 2.2E-18 135.9 34.6 480 178-684 205-708 (840)
35 KOG2047 mRNA splicing factor [ 99.7 5.7E-10 1.2E-14 115.0 58.1 573 104-729 102-717 (835)
36 KOG1915 Cell cycle control pro 99.7 1.3E-10 2.8E-15 115.3 49.2 445 139-629 73-535 (677)
37 KOG1915 Cell cycle control pro 99.6 4E-10 8.6E-15 111.9 50.3 447 105-574 74-548 (677)
38 KOG4318 Bicoid mRNA stability 99.6 1.5E-11 3.2E-16 130.9 40.8 287 466-763 464-801 (1088)
39 PRK10747 putative protoheme IX 99.6 4.4E-11 9.6E-16 127.0 38.0 283 334-629 97-389 (398)
40 KOG4318 Bicoid mRNA stability 99.6 9E-11 1.9E-15 125.1 39.3 264 99-406 20-286 (1088)
41 KOG1155 Anaphase-promoting com 99.6 1.8E-09 3.9E-14 107.4 45.5 384 246-663 159-552 (559)
42 KOG0547 Translocase of outer m 99.5 3.5E-11 7.6E-16 120.0 32.9 217 404-629 339-565 (606)
43 PRK10747 putative protoheme IX 99.5 5E-11 1.1E-15 126.6 35.8 292 264-593 97-388 (398)
44 KOG2376 Signal recognition par 99.5 4.1E-10 9E-15 115.2 40.1 489 257-783 18-582 (652)
45 TIGR00540 hemY_coli hemY prote 99.5 4.6E-11 1E-15 127.6 35.3 291 333-628 96-397 (409)
46 TIGR00540 hemY_coli hemY prote 99.5 4.5E-11 9.7E-16 127.7 34.6 290 263-557 96-396 (409)
47 KOG0547 Translocase of outer m 99.5 1.3E-10 2.9E-15 115.9 34.2 217 333-557 338-563 (606)
48 KOG1155 Anaphase-promoting com 99.5 4.8E-09 1E-13 104.4 44.4 162 393-558 332-493 (559)
49 KOG1173 Anaphase-promoting com 99.5 8.2E-10 1.8E-14 112.6 39.5 504 104-644 16-530 (611)
50 PF13429 TPR_15: Tetratricopep 99.5 1.5E-13 3.2E-18 139.4 12.9 261 361-628 13-275 (280)
51 PF13429 TPR_15: Tetratricopep 99.5 1.6E-13 3.5E-18 139.2 12.3 222 364-592 52-274 (280)
52 KOG2047 mRNA splicing factor [ 99.5 2.3E-07 4.9E-12 96.3 57.8 473 211-702 104-654 (835)
53 KOG1126 DNA-binding cell divis 99.5 1.8E-11 3.8E-16 127.3 25.3 285 406-703 334-624 (638)
54 COG2956 Predicted N-acetylgluc 99.5 3.1E-10 6.7E-15 107.6 30.6 289 264-559 48-346 (389)
55 KOG1156 N-terminal acetyltrans 99.4 2E-07 4.3E-12 97.1 52.5 448 105-596 9-469 (700)
56 KOG1173 Anaphase-promoting com 99.4 8.7E-09 1.9E-13 105.3 41.5 475 100-609 45-530 (611)
57 COG3071 HemY Uncharacterized e 99.4 1.8E-09 3.8E-14 106.0 34.6 286 334-629 97-389 (400)
58 KOG1126 DNA-binding cell divis 99.4 4.4E-11 9.6E-16 124.4 24.9 283 267-560 335-620 (638)
59 COG2956 Predicted N-acetylgluc 99.4 6.8E-10 1.5E-14 105.4 30.5 287 335-628 49-345 (389)
60 COG3071 HemY Uncharacterized e 99.4 2.1E-09 4.6E-14 105.4 34.8 293 264-594 97-389 (400)
61 KOG4162 Predicted calmodulin-b 99.4 1.9E-08 4.1E-13 106.6 42.1 462 263-737 239-785 (799)
62 KOG1127 TPR repeat-containing 99.4 2.7E-07 5.8E-12 100.4 51.2 596 86-715 474-1119(1238)
63 KOG1127 TPR repeat-containing 99.4 8.6E-07 1.9E-11 96.6 52.1 607 89-716 511-1191(1238)
64 KOG0985 Vesicle coat protein c 99.4 7.7E-07 1.7E-11 96.7 50.9 249 107-381 484-749 (1666)
65 KOG1156 N-terminal acetyltrans 99.3 1.7E-06 3.7E-11 90.3 57.3 407 99-526 36-469 (700)
66 KOG4162 Predicted calmodulin-b 99.3 1.8E-07 3.8E-12 99.5 45.1 482 115-629 238-782 (799)
67 KOG3785 Uncharacterized conser 99.3 1.1E-07 2.5E-12 91.4 39.6 218 443-673 271-497 (557)
68 KOG3785 Uncharacterized conser 99.3 3.5E-07 7.5E-12 88.1 41.8 121 503-628 366-488 (557)
69 PF13041 PPR_2: PPR repeat fam 99.3 7.5E-12 1.6E-16 88.5 6.5 50 249-298 1-50 (50)
70 KOG1174 Anaphase-promoting com 99.3 1.9E-07 4.2E-12 91.7 38.2 310 388-708 191-508 (564)
71 KOG2376 Signal recognition par 99.3 1.1E-06 2.3E-11 90.8 44.2 217 145-391 18-258 (652)
72 PRK12370 invasion protein regu 99.2 5.8E-09 1.3E-13 116.0 29.3 182 337-522 277-467 (553)
73 KOG1129 TPR repeat-containing 99.2 2E-09 4.4E-14 102.0 21.3 230 108-350 227-458 (478)
74 PRK12370 invasion protein regu 99.2 4.3E-09 9.3E-14 117.0 27.8 166 545-718 318-488 (553)
75 PF13041 PPR_2: PPR repeat fam 99.2 3E-11 6.5E-16 85.4 6.9 49 599-647 1-49 (50)
76 TIGR02521 type_IV_pilW type IV 99.2 9E-09 1.9E-13 101.5 27.2 198 427-628 32-230 (234)
77 TIGR02521 type_IV_pilW type IV 99.2 1E-08 2.2E-13 101.2 27.2 197 394-594 34-231 (234)
78 KOG3617 WD40 and TPR repeat-co 99.2 2.6E-06 5.7E-11 90.8 44.0 526 102-708 724-1368(1416)
79 KOG1840 Kinesin light chain [C 99.2 5.6E-09 1.2E-13 110.2 24.6 174 139-313 199-394 (508)
80 KOG0985 Vesicle coat protein c 99.2 2.2E-05 4.7E-10 85.8 50.6 340 320-717 983-1325(1666)
81 KOG1840 Kinesin light chain [C 99.2 5.6E-09 1.2E-13 110.3 23.3 245 104-348 199-477 (508)
82 PF12569 NARP1: NMDA receptor- 99.2 1.4E-06 2.9E-11 93.7 41.3 291 217-524 12-333 (517)
83 KOG1129 TPR repeat-containing 99.1 5.6E-09 1.2E-13 99.1 19.3 239 463-708 225-467 (478)
84 KOG1174 Anaphase-promoting com 99.1 8.6E-06 1.9E-10 80.5 41.5 400 101-525 94-500 (564)
85 PF12569 NARP1: NMDA receptor- 99.1 3.5E-07 7.7E-12 98.1 33.2 129 463-594 196-333 (517)
86 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-07 2.5E-12 96.4 27.8 228 473-710 38-275 (296)
87 KOG3616 Selective LIM binding 99.1 2.4E-06 5.2E-11 89.8 36.2 367 255-693 561-931 (1636)
88 KOG0548 Molecular co-chaperone 99.0 9.9E-07 2.1E-11 90.3 31.4 395 329-745 10-465 (539)
89 KOG1914 mRNA cleavage and poly 99.0 7E-05 1.5E-09 76.9 42.7 129 498-628 368-499 (656)
90 KOG3617 WD40 and TPR repeat-co 99.0 0.00011 2.3E-09 79.0 45.2 305 104-453 757-1107(1416)
91 KOG3616 Selective LIM binding 99.0 4.8E-05 1E-09 80.4 42.1 310 256-623 620-930 (1636)
92 KOG0624 dsRNA-activated protei 99.0 9.3E-06 2E-10 78.3 34.0 207 468-702 162-373 (504)
93 KOG0548 Molecular co-chaperone 98.9 5.8E-06 1.3E-10 84.8 33.1 235 325-576 228-469 (539)
94 PRK11189 lipoprotein NlpI; Pro 98.9 9.7E-07 2.1E-11 89.8 28.1 153 115-278 37-192 (296)
95 COG3063 PilF Tfp pilus assembl 98.9 1.1E-06 2.3E-11 80.4 24.6 194 397-594 41-235 (250)
96 KOG2053 Mitochondrial inherita 98.9 0.00021 4.6E-09 78.0 45.1 223 117-353 22-258 (932)
97 COG3063 PilF Tfp pilus assembl 98.9 1.9E-06 4E-11 78.8 24.9 197 325-525 39-236 (250)
98 KOG0624 dsRNA-activated protei 98.9 1.9E-05 4.2E-10 76.1 31.1 319 392-742 39-377 (504)
99 cd05804 StaR_like StaR_like; a 98.8 1.5E-05 3.3E-10 84.2 34.5 96 253-349 116-214 (355)
100 cd05804 StaR_like StaR_like; a 98.8 1.7E-05 3.6E-10 84.0 34.2 202 102-315 4-215 (355)
101 KOG4340 Uncharacterized conser 98.8 5E-06 1.1E-10 78.5 25.9 315 107-451 13-335 (459)
102 KOG4340 Uncharacterized conser 98.8 1.8E-06 3.9E-11 81.4 22.4 194 359-563 13-210 (459)
103 PRK04841 transcriptional regul 98.7 0.0001 2.2E-09 88.7 38.9 335 296-630 384-760 (903)
104 PF04733 Coatomer_E: Coatomer 98.7 5.2E-07 1.1E-11 90.2 15.9 80 547-628 183-263 (290)
105 PF12854 PPR_1: PPR repeat 98.7 2.2E-08 4.8E-13 63.3 3.9 34 245-278 1-34 (34)
106 PRK04841 transcriptional regul 98.7 0.00014 2.9E-09 87.6 38.2 335 261-595 384-760 (903)
107 KOG1914 mRNA cleavage and poly 98.6 0.00098 2.1E-08 68.8 40.6 452 206-687 17-527 (656)
108 PF04733 Coatomer_E: Coatomer 98.6 4.4E-06 9.5E-11 83.6 20.6 149 435-594 111-264 (290)
109 KOG1125 TPR repeat-containing 98.6 9E-06 1.9E-10 84.2 21.9 255 401-690 295-562 (579)
110 PLN02789 farnesyltranstransfer 98.6 5E-05 1.1E-09 77.2 26.9 215 106-368 39-267 (320)
111 PF12854 PPR_1: PPR repeat 98.6 8.8E-08 1.9E-12 60.6 4.2 32 596-627 2-33 (34)
112 PLN02789 farnesyltranstransfer 98.6 7.1E-05 1.5E-09 76.0 27.0 215 253-473 39-267 (320)
113 KOG1125 TPR repeat-containing 98.6 1.2E-05 2.6E-10 83.4 21.3 230 331-594 295-526 (579)
114 KOG2053 Mitochondrial inherita 98.5 0.0045 9.8E-08 68.1 48.7 495 114-628 53-606 (932)
115 KOG3060 Uncharacterized conser 98.5 0.00011 2.4E-09 68.4 22.8 195 545-743 26-228 (289)
116 KOG1070 rRNA processing protei 98.4 0.00013 2.7E-09 83.1 27.2 201 251-458 1458-1666(1710)
117 KOG1128 Uncharacterized conser 98.4 2.3E-05 5E-10 83.4 19.9 221 387-629 394-615 (777)
118 PRK14720 transcript cleavage f 98.4 9.3E-05 2E-09 83.7 26.0 250 425-728 30-280 (906)
119 COG5010 TadD Flp pilus assembl 98.4 3.3E-05 7.2E-10 72.5 18.5 166 100-277 63-228 (257)
120 KOG1070 rRNA processing protei 98.4 0.0002 4.4E-09 81.5 27.6 220 393-616 1460-1686(1710)
121 TIGR03302 OM_YfiO outer membra 98.4 0.00012 2.7E-09 72.0 23.6 186 101-314 30-231 (235)
122 KOG1128 Uncharacterized conser 98.3 3E-05 6.6E-10 82.5 18.7 118 474-594 498-615 (777)
123 PRK15359 type III secretion sy 98.3 2.7E-05 5.9E-10 69.4 15.3 108 104-214 24-131 (144)
124 TIGR03302 OM_YfiO outer membra 98.3 0.00014 3E-09 71.7 21.1 184 425-629 32-231 (235)
125 PRK15179 Vi polysaccharide bio 98.3 0.00031 6.7E-09 78.9 25.3 131 495-629 85-216 (694)
126 KOG3081 Vesicle coat complex C 98.3 0.001 2.2E-08 62.7 24.3 118 433-560 115-236 (299)
127 KOG3081 Vesicle coat complex C 98.2 0.00051 1.1E-08 64.6 22.2 117 259-385 116-236 (299)
128 PRK10370 formate-dependent nit 98.2 0.00016 3.5E-09 68.3 19.7 119 334-455 52-173 (198)
129 PRK15179 Vi polysaccharide bio 98.2 0.00044 9.6E-09 77.6 26.1 218 318-558 25-243 (694)
130 PRK10370 formate-dependent nit 98.2 4.5E-05 9.8E-10 72.0 15.7 124 86-212 55-181 (198)
131 PRK14720 transcript cleavage f 98.2 0.00056 1.2E-08 77.5 25.5 222 101-367 28-268 (906)
132 COG5010 TadD Flp pilus assembl 98.2 0.0004 8.7E-09 65.4 20.0 126 462-590 101-226 (257)
133 PRK15359 type III secretion sy 98.1 0.00023 4.9E-09 63.5 16.9 90 503-594 31-120 (144)
134 TIGR02552 LcrH_SycD type III s 98.1 0.00012 2.6E-09 64.8 14.7 110 100-213 13-122 (135)
135 KOG3060 Uncharacterized conser 98.0 0.0043 9.3E-08 58.1 23.1 117 474-594 99-219 (289)
136 TIGR00756 PPR pentatricopeptid 98.0 8.4E-06 1.8E-10 52.4 4.1 35 252-286 1-35 (35)
137 COG4783 Putative Zn-dependent 98.0 0.0024 5.2E-08 65.6 22.9 16 472-487 351-366 (484)
138 COG4783 Putative Zn-dependent 97.9 0.0035 7.7E-08 64.4 23.2 150 398-569 313-462 (484)
139 TIGR02552 LcrH_SycD type III s 97.9 0.00041 8.9E-09 61.4 15.2 94 534-629 20-113 (135)
140 PF13812 PPR_3: Pentatricopept 97.9 2.1E-05 4.5E-10 50.1 4.2 33 252-284 2-34 (34)
141 TIGR00756 PPR pentatricopeptid 97.8 3.6E-05 7.8E-10 49.4 4.5 33 603-635 2-34 (35)
142 PF09976 TPR_21: Tetratricopep 97.8 0.0015 3.2E-08 58.5 15.6 126 499-627 15-144 (145)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0011 2.4E-08 68.9 15.9 122 500-628 173-295 (395)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0014 3E-08 68.1 16.1 123 325-453 173-295 (395)
145 PF13812 PPR_3: Pentatricopept 97.7 7.8E-05 1.7E-09 47.4 4.5 32 603-634 3-34 (34)
146 PF10037 MRP-S27: Mitochondria 97.6 0.00084 1.8E-08 69.9 13.5 124 456-579 61-186 (429)
147 PF09976 TPR_21: Tetratricopep 97.6 0.004 8.6E-08 55.8 16.3 116 334-451 24-143 (145)
148 PF01535 PPR: PPR repeat; Int 97.6 6.4E-05 1.4E-09 46.6 3.3 31 252-282 1-31 (31)
149 cd00189 TPR Tetratricopeptide 97.6 0.00095 2.1E-08 54.3 11.4 96 106-203 2-97 (100)
150 CHL00033 ycf3 photosystem I as 97.6 0.0016 3.4E-08 60.2 13.6 102 142-244 38-148 (168)
151 KOG0553 TPR repeat-containing 97.6 0.00032 7E-09 67.4 8.8 100 608-712 88-190 (304)
152 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0024 5.3E-08 54.8 13.7 100 105-204 3-106 (119)
153 PF10037 MRP-S27: Mitochondria 97.6 0.0011 2.4E-08 69.1 13.2 126 419-544 59-186 (429)
154 KOG0553 TPR repeat-containing 97.5 0.0014 3E-08 63.1 11.7 100 573-678 88-190 (304)
155 PF08579 RPM2: Mitochondrial r 97.5 0.0016 3.5E-08 52.9 10.1 69 578-646 37-114 (120)
156 PF13414 TPR_11: TPR repeat; P 97.4 0.00023 5.1E-09 54.2 5.1 68 669-737 2-69 (69)
157 PF01535 PPR: PPR repeat; Int 97.4 0.00017 3.7E-09 44.6 3.3 29 603-631 2-30 (31)
158 KOG1130 Predicted G-alpha GTPa 97.4 0.003 6.5E-08 63.0 12.9 262 148-416 26-340 (639)
159 PRK10866 outer membrane biogen 97.4 0.05 1.1E-06 53.3 21.6 56 330-386 41-99 (243)
160 COG4235 Cytochrome c biogenesi 97.4 0.0062 1.4E-07 59.2 14.8 127 87-217 139-268 (287)
161 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0053 1.1E-07 52.7 13.4 101 603-708 4-113 (119)
162 PLN03088 SGT1, suppressor of 97.4 0.0041 8.8E-08 64.9 14.8 101 109-213 7-107 (356)
163 PRK02603 photosystem I assembl 97.4 0.0067 1.5E-07 56.2 14.6 117 103-224 34-166 (172)
164 PF08579 RPM2: Mitochondrial r 97.3 0.0037 8E-08 50.8 10.7 74 503-576 32-114 (120)
165 cd00189 TPR Tetratricopeptide 97.3 0.004 8.7E-08 50.5 11.8 90 537-628 6-95 (100)
166 PF14938 SNAP: Soluble NSF att 97.3 0.0065 1.4E-07 61.4 15.3 212 105-349 36-265 (282)
167 PRK02603 photosystem I assembl 97.3 0.0077 1.7E-07 55.8 14.5 90 139-229 35-126 (172)
168 KOG0550 Molecular chaperone (D 97.2 0.29 6.2E-06 49.7 25.2 272 330-630 58-350 (486)
169 CHL00033 ycf3 photosystem I as 97.2 0.0082 1.8E-07 55.3 13.9 96 104-200 35-139 (168)
170 PRK10153 DNA-binding transcrip 97.2 0.016 3.6E-07 63.2 17.8 65 636-702 420-485 (517)
171 PRK10866 outer membrane biogen 97.2 0.074 1.6E-06 52.1 20.7 56 537-592 181-238 (243)
172 PRK15363 pathogenicity island 97.2 0.0063 1.4E-07 53.5 11.6 97 105-203 36-132 (157)
173 PF12895 Apc3: Anaphase-promot 97.2 0.00077 1.7E-08 53.7 5.5 81 117-199 2-83 (84)
174 PF05843 Suf: Suppressor of fo 97.2 0.0069 1.5E-07 60.9 13.5 129 498-629 3-135 (280)
175 PRK15363 pathogenicity island 97.1 0.025 5.4E-07 49.8 14.7 85 366-452 45-129 (157)
176 PF05843 Suf: Suppressor of fo 97.1 0.0088 1.9E-07 60.1 13.7 134 462-600 2-139 (280)
177 PF14938 SNAP: Soluble NSF att 97.1 0.037 8E-07 55.9 18.2 25 360-384 159-183 (282)
178 PLN03088 SGT1, suppressor of 97.1 0.012 2.6E-07 61.4 15.0 89 469-559 10-98 (356)
179 KOG0550 Molecular chaperone (D 97.1 0.31 6.8E-06 49.4 23.5 286 110-455 55-350 (486)
180 PRK10153 DNA-binding transcrip 97.1 0.029 6.3E-07 61.3 18.3 63 565-629 419-481 (517)
181 PF12895 Apc3: Anaphase-promot 97.1 0.0012 2.5E-08 52.7 5.7 80 544-626 2-83 (84)
182 COG3898 Uncharacterized membra 97.1 0.4 8.7E-06 48.2 30.7 251 472-735 131-392 (531)
183 KOG2041 WD40 repeat protein [G 97.0 0.67 1.5E-05 50.1 29.2 156 264-451 747-903 (1189)
184 PF13414 TPR_11: TPR repeat; P 97.0 0.0027 5.8E-08 48.3 6.8 62 105-167 4-66 (69)
185 PF13432 TPR_16: Tetratricopep 97.0 0.003 6.5E-08 47.3 6.7 57 111-168 4-60 (65)
186 PF12688 TPR_5: Tetratrico pep 97.0 0.035 7.5E-07 47.1 13.7 110 107-220 4-117 (120)
187 PF14559 TPR_19: Tetratricopep 97.0 0.0029 6.3E-08 47.9 6.6 53 150-203 2-54 (68)
188 PF06239 ECSIT: Evolutionarily 97.0 0.017 3.7E-07 53.4 12.3 102 460-580 46-152 (228)
189 PF06239 ECSIT: Evolutionarily 96.9 0.021 4.7E-07 52.7 13.0 122 563-702 44-174 (228)
190 KOG1130 Predicted G-alpha GTPa 96.8 0.014 3.1E-07 58.3 11.4 132 498-629 197-343 (639)
191 KOG2796 Uncharacterized conser 96.8 0.41 8.9E-06 45.5 19.7 130 429-559 180-314 (366)
192 PF13432 TPR_16: Tetratricopep 96.7 0.0061 1.3E-07 45.6 6.7 58 145-203 3-60 (65)
193 COG4235 Cytochrome c biogenesi 96.7 0.064 1.4E-06 52.4 15.1 129 156-294 139-268 (287)
194 KOG1538 Uncharacterized conser 96.7 0.38 8.3E-06 51.4 21.2 231 207-489 554-801 (1081)
195 PF07079 DUF1347: Protein of u 96.6 1 2.3E-05 46.4 49.4 153 52-221 7-179 (549)
196 KOG2041 WD40 repeat protein [G 96.6 1.4 3E-05 47.8 31.6 199 136-381 689-903 (1189)
197 PF12688 TPR_5: Tetratrico pep 96.6 0.12 2.7E-06 43.8 14.5 55 365-419 10-66 (120)
198 COG4700 Uncharacterized protei 96.6 0.52 1.1E-05 42.4 18.9 101 528-630 86-189 (251)
199 KOG2796 Uncharacterized conser 96.6 0.54 1.2E-05 44.7 19.1 141 393-536 179-324 (366)
200 PF13525 YfiO: Outer membrane 96.5 0.32 6.9E-06 46.3 18.7 57 399-455 13-71 (203)
201 COG5107 RNA14 Pre-mRNA 3'-end 96.5 1.2 2.5E-05 45.9 39.8 130 496-629 397-530 (660)
202 PF14559 TPR_19: Tetratricopep 96.5 0.0089 1.9E-07 45.2 6.3 51 543-594 3-53 (68)
203 PF13525 YfiO: Outer membrane 96.4 0.36 7.8E-06 46.0 18.4 55 331-385 15-71 (203)
204 PF13371 TPR_9: Tetratricopept 96.4 0.013 2.8E-07 45.1 6.9 58 112-170 3-60 (73)
205 PF13371 TPR_9: Tetratricopept 96.2 0.03 6.5E-07 43.0 7.7 58 146-204 2-59 (73)
206 PF13428 TPR_14: Tetratricopep 96.1 0.015 3.3E-07 39.3 5.1 41 672-713 3-43 (44)
207 PF03704 BTAD: Bacterial trans 96.0 0.3 6.6E-06 43.6 14.8 69 324-393 65-138 (146)
208 COG4700 Uncharacterized protei 96.0 1.1 2.4E-05 40.3 19.0 126 354-481 87-213 (251)
209 PRK10803 tol-pal system protei 96.0 0.12 2.6E-06 51.0 12.8 92 534-629 146-245 (263)
210 PF04840 Vps16_C: Vps16, C-ter 96.0 2.2 4.7E-05 43.6 29.5 56 425-486 207-262 (319)
211 PF07079 DUF1347: Protein of u 96.0 2.4 5.2E-05 43.9 47.0 187 250-455 127-327 (549)
212 COG3898 Uncharacterized membra 95.9 2.3 4.9E-05 43.1 32.3 253 368-636 132-398 (531)
213 PF13281 DUF4071: Domain of un 95.9 1.6 3.4E-05 45.1 20.5 173 502-702 147-337 (374)
214 KOG1258 mRNA processing protei 95.8 3.4 7.4E-05 44.5 35.4 412 250-684 44-489 (577)
215 PRK10803 tol-pal system protei 95.8 0.2 4.3E-06 49.5 13.2 86 507-594 154-245 (263)
216 KOG2114 Vacuolar assembly/sort 95.7 4.7 0.0001 45.2 26.0 179 106-312 336-516 (933)
217 KOG1258 mRNA processing protei 95.6 4.1 8.9E-05 44.0 37.3 31 250-280 150-180 (577)
218 PF04840 Vps16_C: Vps16, C-ter 95.6 3.1 6.8E-05 42.4 30.7 23 253-275 2-24 (319)
219 PF03704 BTAD: Bacterial trans 95.5 0.13 2.8E-06 46.1 10.1 70 106-176 64-138 (146)
220 PRK15331 chaperone protein Sic 95.5 0.14 3.1E-06 45.4 9.7 94 107-202 40-133 (165)
221 KOG1538 Uncharacterized conser 95.4 1.2 2.6E-05 47.9 17.4 56 107-165 601-658 (1081)
222 PF13512 TPR_18: Tetratricopep 95.3 0.63 1.4E-05 40.4 12.7 85 634-718 9-95 (142)
223 KOG0543 FKBP-type peptidyl-pro 95.2 0.5 1.1E-05 48.2 13.9 84 649-734 271-354 (397)
224 PRK11906 transcriptional regul 95.1 1.3 2.7E-05 46.6 16.8 109 547-660 320-432 (458)
225 PRK15331 chaperone protein Sic 95.1 1.7 3.8E-05 38.7 15.2 86 507-594 48-133 (165)
226 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.26 5.7E-06 51.3 11.7 68 100-168 71-141 (453)
227 PF13424 TPR_12: Tetratricopep 95.0 0.031 6.7E-07 43.6 4.0 67 211-279 7-74 (78)
228 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.25 5.4E-06 51.5 11.2 68 136-203 72-141 (453)
229 PF13424 TPR_12: Tetratricopep 94.9 0.087 1.9E-06 41.0 6.3 61 568-628 7-73 (78)
230 PF12921 ATP13: Mitochondrial 94.9 0.43 9.4E-06 41.0 10.9 96 530-645 1-97 (126)
231 KOG4555 TPR repeat-containing 94.9 0.048 1E-06 45.5 4.7 49 649-699 57-106 (175)
232 PF12921 ATP13: Mitochondrial 94.9 0.39 8.4E-06 41.2 10.5 50 527-576 48-98 (126)
233 PRK11906 transcriptional regul 94.8 0.85 1.8E-05 47.8 14.5 132 581-717 273-420 (458)
234 PF13281 DUF4071: Domain of un 94.6 5.5 0.00012 41.2 19.7 90 295-384 150-254 (374)
235 KOG2280 Vacuolar assembly/sort 94.5 9.9 0.00021 42.2 33.7 79 538-626 691-769 (829)
236 KOG0543 FKBP-type peptidyl-pro 94.4 0.54 1.2E-05 47.9 11.7 126 111-244 215-354 (397)
237 PF08631 SPO22: Meiosis protei 94.2 6.8 0.00015 39.4 25.8 103 212-315 39-150 (278)
238 COG3118 Thioredoxin domain-con 94.2 3.5 7.6E-05 40.5 16.2 149 145-305 140-291 (304)
239 PF10300 DUF3808: Protein of u 94.2 4.6 9.9E-05 44.0 19.3 115 510-627 247-373 (468)
240 PF09205 DUF1955: Domain of un 94.0 3.4 7.3E-05 35.1 14.6 135 473-632 14-151 (161)
241 smart00299 CLH Clathrin heavy 93.9 3.6 7.9E-05 36.2 15.3 17 609-625 77-93 (140)
242 PF13428 TPR_14: Tetratricopep 93.9 0.17 3.8E-06 34.0 5.1 39 106-145 3-41 (44)
243 KOG1920 IkappaB kinase complex 93.8 16 0.00035 43.0 22.8 28 322-349 791-820 (1265)
244 PF04184 ST7: ST7 protein; In 93.8 4.9 0.00011 42.5 17.4 61 567-627 260-321 (539)
245 COG3118 Thioredoxin domain-con 93.7 7.7 0.00017 38.2 18.2 121 331-454 144-264 (304)
246 KOG1920 IkappaB kinase complex 93.6 16 0.00034 43.0 22.3 19 469-487 973-991 (1265)
247 PF08631 SPO22: Meiosis protei 93.6 8.9 0.00019 38.6 25.5 103 210-319 85-190 (278)
248 COG4105 ComL DNA uptake lipopr 93.6 7.4 0.00016 37.6 20.5 71 402-472 45-117 (254)
249 COG5107 RNA14 Pre-mRNA 3'-end 93.5 11 0.00023 39.2 39.8 145 530-680 396-545 (660)
250 COG0457 NrfG FOG: TPR repeat [ 93.5 7.4 0.00016 37.2 30.2 62 428-489 61-123 (291)
251 PF10300 DUF3808: Protein of u 93.5 5.3 0.00011 43.5 18.2 47 335-383 247-294 (468)
252 smart00299 CLH Clathrin heavy 93.4 3.7 8.1E-05 36.2 14.4 40 398-438 14-53 (140)
253 PF09205 DUF1955: Domain of un 93.4 4.4 9.6E-05 34.4 14.0 62 500-562 90-151 (161)
254 PF04053 Coatomer_WDAD: Coatom 93.1 1.9 4.1E-05 46.2 13.9 130 463-625 297-426 (443)
255 PF04053 Coatomer_WDAD: Coatom 93.1 1.3 2.8E-05 47.4 12.7 129 253-414 297-425 (443)
256 KOG3941 Intermediate in Toll s 93.1 1.3 2.9E-05 42.6 11.0 104 563-684 64-172 (406)
257 COG1747 Uncharacterized N-term 92.9 15 0.00032 39.0 23.2 176 530-713 65-247 (711)
258 KOG4555 TPR repeat-containing 92.7 2.8 6E-05 35.4 11.0 93 110-204 49-145 (175)
259 COG0457 NrfG FOG: TPR repeat [ 92.7 9.7 0.00021 36.4 30.6 187 370-559 37-230 (291)
260 COG4105 ComL DNA uptake lipopr 92.4 11 0.00024 36.4 21.0 72 331-402 44-117 (254)
261 KOG1941 Acetylcholine receptor 92.4 6.4 0.00014 39.6 15.0 162 534-698 86-274 (518)
262 PF07719 TPR_2: Tetratricopept 92.4 0.31 6.7E-06 30.4 4.3 32 671-702 2-33 (34)
263 KOG2610 Uncharacterized conser 92.3 2.7 5.8E-05 41.7 12.3 157 115-277 114-273 (491)
264 COG4785 NlpI Lipoprotein NlpI, 92.3 9.6 0.00021 35.5 18.9 165 98-280 93-266 (297)
265 PF13170 DUF4003: Protein of u 92.1 15 0.00031 37.2 18.6 130 267-398 78-224 (297)
266 PF13170 DUF4003: Protein of u 92.1 5.1 0.00011 40.4 14.7 136 225-365 74-226 (297)
267 KOG3941 Intermediate in Toll s 92.1 1.7 3.6E-05 42.0 10.3 105 249-372 65-174 (406)
268 KOG1585 Protein required for f 92.1 11 0.00025 35.8 19.1 205 177-414 34-250 (308)
269 PF00515 TPR_1: Tetratricopept 92.0 0.34 7.4E-06 30.3 4.2 32 671-702 2-33 (34)
270 PF13431 TPR_17: Tetratricopep 91.9 0.15 3.2E-06 32.0 2.3 24 693-717 2-25 (34)
271 PF13512 TPR_18: Tetratricopep 91.7 4.2 9.1E-05 35.4 11.6 84 105-188 11-96 (142)
272 KOG2610 Uncharacterized conser 91.5 4.8 0.0001 40.0 12.9 155 436-594 113-275 (491)
273 COG1729 Uncharacterized protei 91.2 3.4 7.4E-05 40.1 11.7 96 463-560 144-244 (262)
274 PF13176 TPR_7: Tetratricopept 91.2 0.18 3.9E-06 32.2 2.2 29 672-700 1-29 (36)
275 COG1729 Uncharacterized protei 91.2 3 6.5E-05 40.5 11.3 97 106-203 144-244 (262)
276 PF07035 Mic1: Colon cancer-as 91.1 12 0.00025 34.0 15.2 33 342-374 15-47 (167)
277 PF04184 ST7: ST7 protein; In 91.0 16 0.00035 38.8 16.8 57 466-522 264-321 (539)
278 KOG1550 Extracellular protein 90.8 32 0.00069 38.6 24.0 213 511-735 308-538 (552)
279 KOG2114 Vacuolar assembly/sort 90.2 38 0.00082 38.5 26.8 38 237-275 418-455 (933)
280 KOG2280 Vacuolar assembly/sort 89.9 37 0.00081 38.0 33.5 110 565-694 683-794 (829)
281 COG4785 NlpI Lipoprotein NlpI, 89.6 18 0.00039 33.9 18.8 83 119-203 80-162 (297)
282 KOG4234 TPR repeat-containing 89.6 1.6 3.5E-05 39.9 7.4 91 608-702 102-200 (271)
283 KOG1550 Extracellular protein 89.5 40 0.00088 37.7 25.7 154 331-491 259-427 (552)
284 PF10602 RPN7: 26S proteasome 89.4 4 8.7E-05 37.7 10.3 63 252-314 37-101 (177)
285 KOG1941 Acetylcholine receptor 89.1 28 0.0006 35.3 16.3 171 106-278 85-273 (518)
286 COG3629 DnrI DNA-binding trans 88.7 4.8 0.0001 39.7 10.7 77 323-400 155-236 (280)
287 COG3629 DnrI DNA-binding trans 88.7 4.3 9.3E-05 40.1 10.3 80 139-219 153-237 (280)
288 COG4649 Uncharacterized protei 88.7 18 0.00039 32.6 13.8 136 106-249 61-200 (221)
289 KOG2063 Vacuolar assembly/sort 88.5 56 0.0012 38.1 21.9 26 359-384 507-532 (877)
290 PF10602 RPN7: 26S proteasome 88.3 6.5 0.00014 36.3 10.9 59 569-627 39-99 (177)
291 COG3947 Response regulator con 88.3 23 0.00051 34.7 14.5 57 674-731 283-345 (361)
292 PF13176 TPR_7: Tetratricopept 88.2 1.1 2.4E-05 28.5 4.1 26 603-628 1-26 (36)
293 PF07035 Mic1: Colon cancer-as 87.8 21 0.00045 32.4 15.4 101 237-347 15-115 (167)
294 PF13431 TPR_17: Tetratricopep 87.4 0.73 1.6E-05 28.9 2.8 22 172-193 11-32 (34)
295 KOG4648 Uncharacterized conser 86.5 1.6 3.5E-05 43.2 6.0 87 147-242 105-191 (536)
296 KOG4570 Uncharacterized conser 86.3 6.9 0.00015 38.6 9.9 100 598-698 61-163 (418)
297 KOG4570 Uncharacterized conser 85.9 11 0.00023 37.3 10.9 97 461-559 64-163 (418)
298 PF02259 FAT: FAT domain; Int 85.9 48 0.001 34.6 22.7 65 320-384 145-212 (352)
299 KOG1585 Protein required for f 85.8 34 0.00073 32.8 18.7 47 679-728 199-249 (308)
300 PF06552 TOM20_plant: Plant sp 85.6 10 0.00022 34.4 10.0 76 583-667 52-139 (186)
301 PF02259 FAT: FAT domain; Int 85.2 51 0.0011 34.3 22.7 142 564-717 144-304 (352)
302 PF13181 TPR_8: Tetratricopept 85.0 1.4 3E-05 27.4 3.3 30 672-701 3-32 (34)
303 PF10345 Cohesin_load: Cohesin 84.9 77 0.0017 36.1 42.5 154 298-452 72-251 (608)
304 KOG2396 HAT (Half-A-TPR) repea 84.7 60 0.0013 34.7 40.8 91 87-179 88-179 (568)
305 COG4649 Uncharacterized protei 83.6 34 0.00073 30.9 16.0 123 472-594 69-195 (221)
306 PF04097 Nic96: Nup93/Nic96; 83.5 87 0.0019 35.6 22.4 68 106-175 114-188 (613)
307 KOG0276 Vesicle coat complex C 83.4 9.2 0.0002 41.3 10.1 129 253-414 616-744 (794)
308 PF00515 TPR_1: Tetratricopept 83.1 3.1 6.8E-05 25.7 4.4 26 142-167 4-29 (34)
309 KOG2066 Vacuolar assembly/sort 82.7 92 0.002 35.3 26.9 102 216-333 363-467 (846)
310 KOG0276 Vesicle coat complex C 82.4 22 0.00047 38.6 12.3 150 186-382 598-747 (794)
311 KOG1586 Protein required for f 82.1 48 0.001 31.6 21.8 117 615-731 128-258 (288)
312 PF09613 HrpB1_HrpK: Bacterial 82.0 38 0.00082 30.3 13.1 15 543-557 56-70 (160)
313 KOG4648 Uncharacterized conser 81.9 5.3 0.00011 39.8 7.2 94 181-285 104-197 (536)
314 PF07575 Nucleopor_Nup85: Nup8 81.5 99 0.0021 34.9 21.0 27 103-130 148-174 (566)
315 KOG2066 Vacuolar assembly/sort 81.2 1E+02 0.0023 34.9 29.4 102 148-263 365-467 (846)
316 KOG1464 COP9 signalosome, subu 80.9 56 0.0012 31.7 20.3 154 335-488 41-218 (440)
317 PRK09687 putative lyase; Provi 79.8 71 0.0015 32.1 28.2 121 495-629 141-262 (280)
318 PRK09687 putative lyase; Provi 79.7 71 0.0015 32.1 28.1 17 495-511 205-221 (280)
319 PF14853 Fis1_TPR_C: Fis1 C-te 79.4 9.4 0.0002 26.8 6.0 32 675-707 6-37 (53)
320 PF07719 TPR_2: Tetratricopept 79.3 5 0.00011 24.6 4.4 25 143-167 5-29 (34)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 78.9 14 0.0003 29.6 7.2 61 120-181 23-83 (103)
322 COG2976 Uncharacterized protei 78.7 56 0.0012 30.3 14.5 89 538-631 96-189 (207)
323 PF11207 DUF2989: Protein of u 77.8 20 0.00043 33.4 9.2 73 548-621 123-198 (203)
324 PF10345 Cohesin_load: Cohesin 77.8 1.3E+02 0.0029 34.2 42.9 97 252-348 139-252 (608)
325 PF13374 TPR_10: Tetratricopep 77.4 4.3 9.3E-05 26.4 3.8 29 671-699 3-31 (42)
326 PF06552 TOM20_plant: Plant sp 77.3 39 0.00085 30.8 10.6 111 120-247 7-138 (186)
327 PF11207 DUF2989: Protein of u 77.1 23 0.00049 33.0 9.4 20 530-549 177-196 (203)
328 KOG4234 TPR repeat-containing 77.0 63 0.0014 30.0 13.2 92 540-636 104-201 (271)
329 PF09613 HrpB1_HrpK: Bacterial 76.6 57 0.0012 29.3 13.8 56 112-169 18-74 (160)
330 COG5159 RPN6 26S proteasome re 76.1 58 0.0013 32.0 11.9 32 675-706 130-165 (421)
331 PRK15180 Vi polysaccharide bio 76.1 1.1E+02 0.0024 32.4 29.1 121 262-386 300-421 (831)
332 PF13374 TPR_10: Tetratricopep 75.4 7.1 0.00015 25.3 4.5 28 602-629 3-30 (42)
333 cd00923 Cyt_c_Oxidase_Va Cytoc 74.8 21 0.00046 28.6 7.2 45 479-523 25-69 (103)
334 PF13174 TPR_6: Tetratricopept 74.1 4.8 0.0001 24.5 3.1 28 675-702 5-32 (33)
335 PF02284 COX5A: Cytochrome c o 73.0 16 0.00035 29.6 6.3 47 122-168 28-74 (108)
336 TIGR02561 HrpB1_HrpK type III 72.9 67 0.0014 28.4 12.3 16 578-593 56-71 (153)
337 PHA02875 ankyrin repeat protei 72.9 1E+02 0.0022 33.1 15.1 12 652-663 297-308 (413)
338 PF08424 NRDE-2: NRDE-2, neces 72.7 1.2E+02 0.0026 31.2 16.2 71 97-168 12-94 (321)
339 COG4455 ImpE Protein of avirul 72.0 91 0.002 29.5 13.3 77 141-218 3-81 (273)
340 PF02284 COX5A: Cytochrome c o 71.8 19 0.00041 29.2 6.5 47 479-525 28-74 (108)
341 PF04910 Tcf25: Transcriptiona 71.4 84 0.0018 32.9 13.3 119 600-730 39-163 (360)
342 PF00637 Clathrin: Region in C 71.0 1.5 3.2E-05 38.9 0.3 84 110-200 13-96 (143)
343 PRK11619 lytic murein transgly 70.6 2E+02 0.0044 32.9 36.5 417 88-534 83-514 (644)
344 KOG1464 COP9 signalosome, subu 70.5 1.1E+02 0.0024 29.8 18.8 172 351-522 21-217 (440)
345 PF00637 Clathrin: Region in C 69.9 1.9 4E-05 38.3 0.7 48 507-554 18-65 (143)
346 KOG2471 TPR repeat-containing 69.6 1.1E+02 0.0023 32.7 12.9 104 576-680 250-379 (696)
347 PHA02875 ankyrin repeat protei 69.6 1.6E+02 0.0035 31.5 17.3 70 237-310 16-89 (413)
348 smart00028 TPR Tetratricopepti 69.3 8.5 0.00018 22.5 3.6 31 672-702 3-33 (34)
349 TIGR03504 FimV_Cterm FimV C-te 69.2 7.9 0.00017 26.0 3.3 25 110-134 5-29 (44)
350 PF07721 TPR_4: Tetratricopept 68.8 6.5 0.00014 22.7 2.6 22 107-128 4-25 (26)
351 COG2976 Uncharacterized protei 68.8 1E+02 0.0022 28.7 14.8 90 608-702 96-191 (207)
352 COG2909 MalT ATP-dependent tra 68.5 2.3E+02 0.0051 32.9 28.6 228 507-736 426-689 (894)
353 TIGR02508 type_III_yscG type I 68.0 50 0.0011 26.7 8.0 58 147-211 47-104 (115)
354 COG3947 Response regulator con 67.9 22 0.00048 34.9 7.3 60 141-201 281-340 (361)
355 KOG3364 Membrane protein invol 67.6 29 0.00063 29.9 7.0 53 649-702 49-103 (149)
356 COG4455 ImpE Protein of avirul 65.6 1.3E+02 0.0027 28.6 12.6 73 570-644 5-80 (273)
357 PF13929 mRNA_stabil: mRNA sta 65.6 1.5E+02 0.0033 29.5 15.9 115 372-486 144-263 (292)
358 PF13181 TPR_8: Tetratricopept 64.9 18 0.00039 22.1 4.4 27 603-629 3-29 (34)
359 KOG2297 Predicted translation 63.6 1.6E+02 0.0036 29.3 18.7 154 443-623 184-343 (412)
360 TIGR02561 HrpB1_HrpK type III 63.3 1.1E+02 0.0023 27.1 13.3 50 334-385 23-73 (153)
361 KOG4507 Uncharacterized conser 62.5 49 0.0011 35.9 9.2 103 117-221 620-722 (886)
362 KOG1586 Protein required for f 61.7 1.5E+02 0.0034 28.4 19.3 18 368-385 166-183 (288)
363 PF13174 TPR_6: Tetratricopept 60.7 14 0.00031 22.2 3.3 19 149-167 10-28 (33)
364 TIGR02508 type_III_yscG type I 60.1 93 0.002 25.3 8.2 11 543-553 51-61 (115)
365 PF13762 MNE1: Mitochondrial s 59.8 1.2E+02 0.0027 26.7 10.4 93 130-222 28-128 (145)
366 KOG3824 Huntingtin interacting 59.8 24 0.00052 34.8 6.0 52 649-702 130-182 (472)
367 TIGR03504 FimV_Cterm FimV C-te 59.2 20 0.00043 24.1 3.8 25 257-281 5-29 (44)
368 PF10579 Rapsyn_N: Rapsyn N-te 58.1 33 0.00071 26.4 5.2 45 649-693 20-66 (80)
369 PF07575 Nucleopor_Nup85: Nup8 57.2 3.3E+02 0.0071 30.7 19.8 26 251-277 149-174 (566)
370 PF13762 MNE1: Mitochondrial s 57.0 1.4E+02 0.003 26.4 10.3 81 569-649 42-128 (145)
371 COG1747 Uncharacterized N-term 56.9 2.9E+02 0.0062 30.0 25.6 179 355-541 65-249 (711)
372 PF04097 Nic96: Nup93/Nic96; 55.7 3.6E+02 0.0078 30.8 25.2 63 254-317 114-183 (613)
373 PF00244 14-3-3: 14-3-3 protei 54.8 2.1E+02 0.0046 27.8 11.9 57 502-558 7-64 (236)
374 PRK10941 hypothetical protein; 54.5 1.5E+02 0.0032 29.5 10.8 78 143-221 185-263 (269)
375 COG5187 RPN7 26S proteasome re 54.2 1.8E+02 0.0039 28.8 10.7 64 671-734 116-187 (412)
376 PF00244 14-3-3: 14-3-3 protei 53.9 1.8E+02 0.0038 28.4 11.1 39 538-576 8-46 (236)
377 PF10579 Rapsyn_N: Rapsyn N-te 53.1 42 0.00091 25.9 5.1 46 151-196 18-65 (80)
378 KOG4642 Chaperone-dependent E3 52.9 2E+02 0.0044 27.7 10.5 102 540-645 19-126 (284)
379 PF11846 DUF3366: Domain of un 52.4 42 0.00091 31.5 6.5 50 651-702 127-176 (193)
380 PF13929 mRNA_stabil: mRNA sta 51.1 2.7E+02 0.0058 27.9 17.8 119 187-311 141-263 (292)
381 KOG0686 COP9 signalosome, subu 50.3 3.3E+02 0.0071 28.6 14.5 38 641-678 310-352 (466)
382 PF09986 DUF2225: Uncharacteri 49.9 2.4E+02 0.0052 27.0 11.3 53 650-702 140-197 (214)
383 KOG2297 Predicted translation 49.8 2.8E+02 0.0061 27.8 16.8 20 531-550 321-340 (412)
384 KOG2063 Vacuolar assembly/sort 49.7 5.1E+02 0.011 30.7 19.1 28 253-280 506-533 (877)
385 COG2178 Predicted RNA-binding 49.5 2.2E+02 0.0048 26.5 10.7 63 213-280 33-98 (204)
386 PF04910 Tcf25: Transcriptiona 49.0 3.4E+02 0.0073 28.5 21.1 122 172-314 38-167 (360)
387 PF11838 ERAP1_C: ERAP1-like C 48.5 3.2E+02 0.0068 27.9 17.8 81 547-630 146-230 (324)
388 COG5187 RPN7 26S proteasome re 48.2 2.9E+02 0.0063 27.4 14.6 23 568-590 117-139 (412)
389 PF14689 SPOB_a: Sensor_kinase 47.8 43 0.00093 24.5 4.4 45 582-628 6-50 (62)
390 PF09670 Cas_Cas02710: CRISPR- 46.8 2.9E+02 0.0063 29.2 12.2 19 542-560 142-160 (379)
391 PF11663 Toxin_YhaV: Toxin wit 46.5 22 0.00048 30.5 3.0 32 115-148 106-137 (140)
392 KOG2422 Uncharacterized conser 46.5 4.4E+02 0.0096 29.1 14.6 118 106-223 286-430 (665)
393 PF07163 Pex26: Pex26 protein; 46.4 1.9E+02 0.0042 28.6 9.6 57 398-454 90-146 (309)
394 PF11663 Toxin_YhaV: Toxin wit 46.0 25 0.00054 30.2 3.3 33 149-183 105-137 (140)
395 PRK11619 lytic murein transgly 45.8 5.2E+02 0.011 29.7 40.0 80 143-228 103-182 (644)
396 PF09477 Type_III_YscG: Bacter 45.5 1.7E+02 0.0038 24.1 8.7 30 563-594 68-97 (116)
397 KOG0686 COP9 signalosome, subu 44.1 4.1E+02 0.0088 28.0 14.9 179 105-294 151-352 (466)
398 PF14669 Asp_Glu_race_2: Putat 44.0 2.7E+02 0.0058 25.9 14.1 55 396-450 137-205 (233)
399 TIGR02710 CRISPR-associated pr 43.8 1.2E+02 0.0026 31.7 8.5 52 575-626 139-196 (380)
400 KOG4507 Uncharacterized conser 43.7 1E+02 0.0022 33.7 7.9 152 318-472 568-721 (886)
401 PF06957 COPI_C: Coatomer (COP 42.8 64 0.0014 34.2 6.5 51 653-703 281-333 (422)
402 KOG0687 26S proteasome regulat 42.7 3.8E+02 0.0083 27.2 17.0 96 567-662 105-208 (393)
403 KOG2908 26S proteasome regulat 41.7 3.9E+02 0.0085 27.3 11.1 78 536-613 80-168 (380)
404 KOG1308 Hsp70-interacting prot 41.6 19 0.00041 36.3 2.3 99 112-212 122-220 (377)
405 PRK10941 hypothetical protein; 41.6 3.5E+02 0.0076 26.9 11.1 65 105-170 182-246 (269)
406 PF11848 DUF3368: Domain of un 41.0 1E+02 0.0022 21.1 5.1 33 115-147 13-45 (48)
407 KOG3807 Predicted membrane pro 40.5 4.1E+02 0.0088 26.9 11.9 17 543-559 287-303 (556)
408 PF14689 SPOB_a: Sensor_kinase 40.3 61 0.0013 23.7 4.3 30 669-698 22-51 (62)
409 PF14669 Asp_Glu_race_2: Putat 39.9 3.1E+02 0.0068 25.5 13.6 84 462-555 108-205 (233)
410 KOG0551 Hsp90 co-chaperone CNS 39.8 1.2E+02 0.0025 30.8 7.2 94 146-241 88-185 (390)
411 PF14853 Fis1_TPR_C: Fis1 C-te 39.5 1.3E+02 0.0029 21.1 5.8 34 607-642 7-40 (53)
412 smart00386 HAT HAT (Half-A-TPR 39.4 58 0.0013 19.2 3.6 28 684-712 1-28 (33)
413 KOG4077 Cytochrome c oxidase, 38.9 1.9E+02 0.0042 24.7 7.2 46 480-525 68-113 (149)
414 PF12862 Apc5: Anaphase-promot 38.8 2E+02 0.0044 23.0 8.8 24 676-699 47-70 (94)
415 PF14561 TPR_20: Tetratricopep 38.0 2.1E+02 0.0045 22.8 8.4 31 138-168 21-51 (90)
416 PF08424 NRDE-2: NRDE-2, neces 37.4 4.8E+02 0.01 26.8 19.6 79 478-558 48-129 (321)
417 KOG1308 Hsp70-interacting prot 37.4 12 0.00025 37.7 0.2 54 648-702 127-180 (377)
418 KOG4077 Cytochrome c oxidase, 37.2 2E+02 0.0044 24.5 7.1 45 376-420 69-113 (149)
419 KOG0545 Aryl-hydrocarbon recep 36.8 4.1E+02 0.0088 25.9 11.8 68 674-743 234-301 (329)
420 PF11846 DUF3366: Domain of un 35.9 1.5E+02 0.0032 27.7 7.4 33 597-629 140-172 (193)
421 PF09986 DUF2225: Uncharacteri 35.6 4E+02 0.0087 25.4 10.3 25 606-630 170-194 (214)
422 PF12968 DUF3856: Domain of Un 35.6 2.3E+02 0.005 24.0 7.1 66 210-277 56-126 (144)
423 PF09477 Type_III_YscG: Bacter 35.5 2.6E+02 0.0056 23.2 8.8 79 119-204 21-99 (116)
424 COG0790 FOG: TPR repeat, SEL1 34.9 4.8E+02 0.01 26.1 23.8 189 510-711 55-278 (292)
425 PF04190 DUF410: Protein of un 34.8 4.6E+02 0.01 25.9 19.3 80 565-662 89-168 (260)
426 PF11848 DUF3368: Domain of un 34.7 1.5E+02 0.0033 20.3 5.2 25 580-604 16-40 (48)
427 cd08819 CARD_MDA5_2 Caspase ac 34.2 2.2E+02 0.0049 22.5 6.6 14 440-453 50-63 (88)
428 KOG0292 Vesicle coat complex C 34.2 2.5E+02 0.0054 32.6 9.4 156 502-698 626-781 (1202)
429 KOG0403 Neoplastic transformat 33.8 6.1E+02 0.013 27.0 28.3 91 325-420 218-316 (645)
430 PF12862 Apc5: Anaphase-promot 33.8 2.4E+02 0.0051 22.6 7.3 23 607-629 47-69 (94)
431 PF09670 Cas_Cas02710: CRISPR- 33.3 6.1E+02 0.013 26.8 12.5 51 508-559 143-197 (379)
432 PRK10564 maltose regulon perip 33.1 99 0.0021 30.9 5.7 30 359-388 260-289 (303)
433 PF07163 Pex26: Pex26 protein; 33.0 5.1E+02 0.011 25.8 13.5 121 259-379 43-181 (309)
434 KOG2908 26S proteasome regulat 32.9 5E+02 0.011 26.6 10.3 74 571-644 80-164 (380)
435 KOG0376 Serine-threonine phosp 32.7 98 0.0021 33.0 5.8 106 111-221 11-117 (476)
436 cd00280 TRFH Telomeric Repeat 32.7 2.6E+02 0.0057 25.8 7.7 38 468-508 118-155 (200)
437 KOG2034 Vacuolar sorting prote 32.6 8.8E+02 0.019 28.5 24.5 276 294-593 366-688 (911)
438 PF09454 Vps23_core: Vps23 cor 32.5 90 0.0019 23.1 4.1 49 105-154 9-57 (65)
439 PHA02798 ankyrin-like protein; 31.9 4.2E+02 0.0091 29.2 11.3 50 237-286 52-104 (489)
440 COG2178 Predicted RNA-binding 31.4 4.4E+02 0.0095 24.6 10.6 18 681-698 132-149 (204)
441 PF09127 Leuk-A4-hydro_C: Leuk 31.4 1.3E+02 0.0027 26.6 5.7 42 5-46 35-83 (143)
442 COG0735 Fur Fe2+/Zn2+ uptake r 31.3 2.9E+02 0.0064 24.4 8.0 62 126-188 8-69 (145)
443 smart00101 14_3_3 14-3-3 homol 30.7 5.2E+02 0.011 25.3 16.3 55 538-592 8-65 (244)
444 cd00280 TRFH Telomeric Repeat 30.6 3E+02 0.0066 25.4 7.7 22 573-594 118-139 (200)
445 PF14561 TPR_20: Tetratricopep 30.6 2.8E+02 0.0061 22.1 7.9 52 99-150 17-69 (90)
446 PRK13800 putative oxidoreducta 30.6 1E+03 0.022 28.7 28.5 247 354-629 633-880 (897)
447 cd00245 Glm_e Coenzyme B12-dep 30.4 72 0.0016 33.9 4.5 86 583-671 108-203 (428)
448 PF10475 DUF2450: Protein of u 30.3 5.9E+02 0.013 25.7 12.8 55 254-314 101-155 (291)
449 cd08819 CARD_MDA5_2 Caspase ac 29.5 2.9E+02 0.0063 21.9 6.9 35 404-443 49-83 (88)
450 PRK08691 DNA polymerase III su 29.3 5.8E+02 0.013 29.4 11.5 46 547-594 180-226 (709)
451 PF15469 Sec5: Exocyst complex 29.2 4.6E+02 0.0099 24.2 11.8 111 572-706 63-175 (182)
452 PF10255 Paf67: RNA polymerase 29.0 2.5E+02 0.0054 29.8 8.1 61 568-628 124-191 (404)
453 PRK10564 maltose regulon perip 29.0 97 0.0021 31.0 4.9 41 249-289 254-295 (303)
454 KOG4642 Chaperone-dependent E3 28.8 5.5E+02 0.012 25.0 11.5 17 576-592 88-104 (284)
455 PHA03100 ankyrin repeat protei 28.5 5.6E+02 0.012 28.0 11.7 14 236-249 48-61 (480)
456 KOG0292 Vesicle coat complex C 28.2 1E+03 0.023 28.0 23.3 112 250-385 671-782 (1202)
457 PF11838 ERAP1_C: ERAP1-like C 28.0 6.6E+02 0.014 25.6 22.3 29 496-524 201-229 (324)
458 PF10366 Vps39_1: Vacuolar sor 27.7 3.6E+02 0.0077 22.4 8.0 26 177-202 42-67 (108)
459 KOG0687 26S proteasome regulat 27.1 6.9E+02 0.015 25.5 15.7 150 491-644 65-224 (393)
460 TIGR02710 CRISPR-associated pr 26.9 7.7E+02 0.017 26.0 11.9 54 538-591 137-196 (380)
461 PHA03100 ankyrin repeat protei 26.6 7E+02 0.015 27.2 12.0 13 126-138 50-62 (480)
462 KOG0376 Serine-threonine phosp 26.4 1.4E+02 0.003 31.9 5.7 100 506-611 14-115 (476)
463 KOG1839 Uncharacterized protei 26.3 5.3E+02 0.011 31.7 10.8 134 181-314 939-1085(1236)
464 PF12796 Ank_2: Ankyrin repeat 25.7 2.2E+02 0.0047 22.1 5.8 14 238-251 41-54 (89)
465 PHA02989 ankyrin repeat protei 25.5 9.3E+02 0.02 26.5 15.3 49 238-286 52-103 (494)
466 COG0735 Fur Fe2+/Zn2+ uptake r 25.2 3.9E+02 0.0086 23.6 7.7 63 237-300 7-69 (145)
467 PRK13342 recombination factor 25.1 8.7E+02 0.019 26.0 19.3 170 441-629 152-333 (413)
468 PF10366 Vps39_1: Vacuolar sor 24.9 4E+02 0.0088 22.1 7.3 26 394-419 42-67 (108)
469 PRK09857 putative transposase; 24.8 7.4E+02 0.016 25.1 10.5 27 537-563 246-272 (292)
470 KOG1839 Uncharacterized protei 24.1 6.1E+02 0.013 31.2 10.8 161 112-273 940-1121(1236)
471 PRK14958 DNA polymerase III su 23.9 6.7E+02 0.014 27.8 10.8 161 15-184 129-290 (509)
472 COG5191 Uncharacterized conser 23.6 81 0.0018 31.4 3.2 58 649-708 121-179 (435)
473 KOG4014 Uncharacterized conser 23.3 6E+02 0.013 23.5 8.7 147 581-735 50-233 (248)
474 PF12796 Ank_2: Ankyrin repeat 23.1 2.7E+02 0.0059 21.5 5.9 43 238-286 12-54 (89)
475 PF08311 Mad3_BUB1_I: Mad3/BUB 23.1 4.8E+02 0.01 22.3 8.5 43 514-556 81-124 (126)
476 KOG4521 Nuclear pore complex, 23.0 1.5E+03 0.032 27.9 14.1 121 392-518 984-1124(1480)
477 PRK09857 putative transposase; 22.7 6E+02 0.013 25.7 9.4 62 536-598 211-272 (292)
478 KOG4521 Nuclear pore complex, 22.6 1.5E+03 0.032 27.8 14.9 83 253-338 985-1071(1480)
479 cd02683 MIT_1 MIT: domain cont 22.5 3.4E+02 0.0073 20.9 5.9 19 680-698 16-34 (77)
480 KOG2396 HAT (Half-A-TPR) repea 22.4 1E+03 0.023 26.0 41.7 78 125-204 92-170 (568)
481 COG4976 Predicted methyltransf 22.2 1.8E+02 0.0039 27.9 4.9 51 650-702 10-61 (287)
482 KOG2422 Uncharacterized conser 22.1 1.1E+03 0.024 26.2 17.6 126 187-312 251-404 (665)
483 PF00627 UBA: UBA/TS-N domain; 22.1 1.4E+02 0.0031 18.9 3.2 31 658-693 6-37 (37)
484 KOG3364 Membrane protein invol 22.0 5.4E+02 0.012 22.5 11.2 68 136-203 29-100 (149)
485 PF04190 DUF410: Protein of un 21.7 7.9E+02 0.017 24.3 18.9 82 250-350 89-170 (260)
486 PRK14951 DNA polymerase III su 21.6 1E+03 0.023 27.1 11.8 44 549-594 187-231 (618)
487 COG5108 RPO41 Mitochondrial DN 21.3 5.5E+02 0.012 28.9 8.9 91 396-489 33-131 (1117)
488 COG5159 RPN6 26S proteasome re 21.0 8.4E+02 0.018 24.4 18.8 95 255-349 129-234 (421)
489 KOG0991 Replication factor C, 21.0 7.7E+02 0.017 23.9 12.8 137 427-572 131-279 (333)
490 PF07720 TPR_3: Tetratricopept 20.7 2.4E+02 0.0052 17.9 4.2 29 673-701 4-34 (36)
491 COG5108 RPO41 Mitochondrial DN 20.6 6.1E+02 0.013 28.6 9.1 91 291-384 33-131 (1117)
492 PF02847 MA3: MA3 domain; Int 20.4 4.9E+02 0.011 21.4 7.6 22 571-592 7-28 (113)
493 KOG4279 Serine/threonine prote 20.4 2.2E+02 0.0048 32.3 5.9 117 583-702 180-319 (1226)
494 KOG4567 GTPase-activating prot 20.3 8.9E+02 0.019 24.6 9.4 84 481-575 263-356 (370)
495 COG4259 Uncharacterized protei 20.1 4.8E+02 0.01 21.3 6.1 52 586-639 57-108 (121)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-84 Score=757.35 Aligned_cols=663 Identities=19% Similarity=0.242 Sum_probs=605.0
Q ss_pred cCCHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHhhccCCCCCHHHHH
Q 039931 29 LETRETAFAFFKLVVCDDSESTIRSCCIAAHIFAAEDLRLLAQDVVTWVISRIGAGRSKHMVEFMCDDFHLFGSDFRVLD 108 (783)
Q Consensus 29 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (783)
...++.|+.+|..+...+..+....+..+.+...+.+....+..++. .+... +..++..++|
T Consensus 64 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~----------------~~~~~--~~~~~~~~~n 125 (857)
T PLN03077 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCS----------------RALSS--HPSLGVRLGN 125 (857)
T ss_pred CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHH----------------HHHHc--CCCCCchHHH
Confidence 34667888888887755443333333333332222222222222222 22221 2246678999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 039931 109 ALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG 188 (783)
Q Consensus 109 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 188 (783)
.|+.+|++.|+++.|.++|++|. .||..+||.++.+|++.|++++|+++|++|...|+.||.+||++++++|++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999997 47889999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh
Q 039931 189 CIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDID 268 (783)
Q Consensus 189 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 268 (783)
++..+.+++..|.+.|+.||..++|+||.+|++.|++++| +++|++|++ ||+++||++|.+|++.|+++
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A-------~~lf~~m~~----~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA-------RLVFDRMPR----RDCISWNAMISGYFENGECL 270 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHH-------HHHHhcCCC----CCcchhHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999 789999975 79999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 269 QANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMF 348 (783)
Q Consensus 269 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (783)
+|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhh
Q 039931 349 EKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVA 428 (783)
Q Consensus 349 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 428 (783)
. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+
T Consensus 351 ~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 351 T----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred C----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 4 699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039931 429 FTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCN 508 (783)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 508 (783)
+++|+++|++.|++++|.++|++|.+ +|.++|+++|.+|++.|+.++|+.+|++|.. ++.||..||++++.+|++
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 99999999999999999999999976 4889999999999999999999999999986 589999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 039931 509 RGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADEL 588 (783)
Q Consensus 509 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 588 (783)
.|+++.+.+++..+.+.|+.+|..++|+||++|++.|++++|.++|+.+ .||..+|+++|.+|++.|+.++|.++
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 58999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCC
Q 039931 589 VNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELV-SAGIVPNTVTYNTLMNGVCC-DILDRAIIIAAKLLKMAF 666 (783)
Q Consensus 589 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~ 666 (783)
|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+++++++++ |++++|.+++++| ++
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~ 653 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PI 653 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CC
Confidence 9999999999999999999999999999999999999999 68999999999999999997 8999999999887 57
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhh--hHHHHHH-HHHHhcCCCcchhhhHH
Q 039931 667 VPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNI--QENAEFF-QETSEKSLFLDFLMGCM 742 (783)
Q Consensus 667 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~--~~~~~~~-~~~~~~~~~~~~~~~~~ 742 (783)
.||..+|++|+.+|..+|+.+.|....+++.+++|+ +...|..|+++|+.. +++.... +.|.++++..+|..+.+
T Consensus 654 ~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 654 TPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 899999999999999999999999999999999987 889999999999764 3444444 45778888877765554
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-80 Score=725.69 Aligned_cols=638 Identities=19% Similarity=0.250 Sum_probs=602.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 039931 99 LFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFN 178 (783)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 178 (783)
+.+++..+|..++.+|.+.+.++.|.+++..+.+.|..++...+|.|+..|++.|+++.|+++|++| ++||..+||
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m----~~~d~~~~n 156 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM----PERDLFSWN 156 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcC----CCCCeeEHH
Confidence 3567888999999999999999999999999999999999999999999999999999999999999 568999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
++|.+|++.|++++|+++|++|.+.|+.||.+||+.++++|++.++++.+ ++++..|.+.|+.||+.+||+||
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG-------REVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH-------HHHHHHHHHcCCCcccchHhHHH
Confidence 99999999999999999999999999999999999999999999988777 78999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHH
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLD 338 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 338 (783)
.+|++.|++++|.++|++|.+ ||.++|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.++++.|+++
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 999999999999999999964 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 339 EAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMI 418 (783)
Q Consensus 339 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 418 (783)
.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 4789999999999999999999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH
Q 039931 419 EKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFA 498 (783)
Q Consensus 419 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 498 (783)
+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.||++|++.|++++|.++|++|.+ +|.++
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs 457 (857)
T PLN03077 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVIS 457 (857)
T ss_pred HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 78899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK 578 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 578 (783)
|+++|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.|+.+|..++++||++|++
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 99999999999999999999999986 59999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-ccHHHHHHH
Q 039931 579 ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC-DILDRAIII 657 (783)
Q Consensus 579 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~A~~~ 657 (783)
.|++++|.++|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||.+||++++.+|++ |.+++|.++
T Consensus 537 ~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 537 CGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred cCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 99999999999987 589999999999999999999999999999999999999999999999886 899999999
Q ss_pred HHHHH-HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcc
Q 039931 658 AAKLL-KMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLD 736 (783)
Q Consensus 658 ~~~~~-~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~ 736 (783)
|++|. +.|+.|+..+|++++++|++.|++++|.+++++|. .+||..+|..|+.+| ..+++.+.++.+.++.++++
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac-~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNAC-RIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhhC
Confidence 99999 68999999999999999999999999999998873 457899999999986 55888999998888888877
Q ss_pred hhhhHHHHhhhhhhhhhhhhhhHHHhhhhhhhcc
Q 039931 737 FLMGCMTLNVTGDFCVQSMKLQTAAIGRRGRKAA 770 (783)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (783)
|.....-+ ..+.+|.+.|.++.+..-.+..+..
T Consensus 688 p~~~~~y~-ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 688 PNSVGYYI-LLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred CCCcchHH-HHHHHHHHCCChHHHHHHHHHHHHc
Confidence 75544322 2456888889999888776555443
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-73 Score=647.86 Aligned_cols=546 Identities=18% Similarity=0.245 Sum_probs=505.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGI-MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
.+...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|..++|+.+|+.|. .||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHH
Confidence 4556788888999999999999999999999996 4677788899999999999999999999994 4999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHH
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNG 260 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 260 (783)
+.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++| .++|++|.+.|+.||..+|+++|.+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A-------~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM-------FEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHH-------HHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHh--CCCCCcHHHHHHHHHHHHhcCCHH
Q 039931 261 YVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSV--SGLLPNCTLYDITVAGLCWAGRLD 338 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~ 338 (783)
|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.. .++.||..+|+++|.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999986 578999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 339 EAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMI 418 (783)
Q Consensus 339 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 418 (783)
+|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH
Q 039931 419 EKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFA 498 (783)
Q Consensus 419 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 498 (783)
+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK 578 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 578 (783)
|+.++.+|++.|++++|.++|++|.+.|+.||..+|++++..|. +++++|..+.+.+..-. + ......
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~ 824 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIE 824 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccc
Confidence 99999999999999999999999999999999999999996654 35666666655444211 0 011111
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHHHH
Q 039931 579 ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIA 658 (783)
Q Consensus 579 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~~~ 658 (783)
.+..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++|++++. ..++|..++
T Consensus 825 n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-~~~~A~~l~ 903 (1060)
T PLN03218 825 NKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE-YDPRAFSLL 903 (1060)
T ss_pred cchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc-ChHHHHHHH
Confidence 2334679999999999999999999999999999999999999999999888899999999999999743 347899999
Q ss_pred HHHHHcCCCCCHH
Q 039931 659 AKLLKMAFVPNVV 671 (783)
Q Consensus 659 ~~~~~~~~~p~~~ 671 (783)
++|...|+.|+..
T Consensus 904 ~em~~~Gi~p~~~ 916 (1060)
T PLN03218 904 EEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHcCCCCCcc
Confidence 9999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-71 Score=633.47 Aligned_cols=546 Identities=17% Similarity=0.262 Sum_probs=494.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP-RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNI 214 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (783)
.++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|++.|..++|..+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 56777888999999999999999999999999885 46778888999999999999999999998873 99999999
Q ss_pred HHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 039931 215 LINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVS 294 (783)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 294 (783)
++.+|++.|++++| .++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.
T Consensus 443 LL~a~~k~g~~e~A-------~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 443 LMSVCASSQDIDGA-------LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred HHHHHHhCcCHHHH-------HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999988 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCH
Q 039931 295 GHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFE--KGISPSIFAFNSIIAAYSRAGLE 372 (783)
Q Consensus 295 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~ 372 (783)
+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999999986 67899999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 373 ENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNEL 452 (783)
Q Consensus 373 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 452 (783)
++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 039931 453 NRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNF 532 (783)
Q Consensus 453 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 532 (783)
.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 533 TFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYC 612 (783)
Q Consensus 533 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 612 (783)
||+.++.+|++.|++++|.++|.+|.+.|+.||..+|++++..|. +++++|.++.+.+... .+ .....
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f--~~--------g~~~~ 823 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF--DS--------GRPQI 823 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh--hc--------ccccc
Confidence 999999999999999999999999999999999999999986654 2566766665554431 00 11122
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 039931 613 NIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLL 691 (783)
Q Consensus 613 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 691 (783)
..+..++|..+|++|++.|+.||..||+.++.+++. +..+.+..++++|...+..|+..+|+++++++++. .++|+.
T Consensus 824 ~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~ 901 (1060)
T PLN03218 824 ENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFS 901 (1060)
T ss_pred ccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHH
Confidence 234457799999999999999999999999976665 67788888888888888899999999999998543 368999
Q ss_pred HHHHHhhcCCCCCHH
Q 039931 692 WGQKLSEISFDFDET 706 (783)
Q Consensus 692 ~~~~~~~~~~~~d~~ 706 (783)
++++|.+.+..|+..
T Consensus 902 l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 902 LLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHcCCCCCcc
Confidence 999999998887764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-66 Score=592.88 Aligned_cols=512 Identities=19% Similarity=0.291 Sum_probs=473.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLG-PRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNI 214 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (783)
..+..+|+.++..|.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4456689999999999999999999999998765 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 039931 215 LINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVS 294 (783)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 294 (783)
|+++|++.|++++| .++|++|++ ||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 164 Li~~y~k~g~~~~A-------~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 164 VLLMHVKCGMLIDA-------RRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred HHHHHhcCCCHHHH-------HHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 99999999999998 789999975 8999999999999999999999999999999999999999999999
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 039931 295 GHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEEN 374 (783)
Q Consensus 295 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 374 (783)
+|++.|..+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|.. +|+++||+||.+|++.|++++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999975 599999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 375 AFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 375 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..++++|+++|++.|++++|.++|++|.+
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHH
Q 039931 455 RKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQ-KGLLPDNFT 533 (783)
Q Consensus 455 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~~~~p~~~~ 533 (783)
||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+
T Consensus 389 ----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 389 ----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred ----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc
Confidence 599999999999999999999999999999999999999999999999999999999999999986 599999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYC 612 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~ 612 (783)
|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|+..|+++.|..+++++.+ +.| +..+|+.++++|+
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYN 539 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHH
Confidence 999999999999999999999876 5789999999999999999999999999999975 566 4679999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH-------HH-----HhhccHHHHHHHHHHHHHcCCCCCHH
Q 039931 613 NIRKMNQAAMMLDELVSAGIVPN-TVTYNTLM-------NG-----VCCDILDRAIIIAAKLLKMAFVPNVV 671 (783)
Q Consensus 613 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li-------~~-----~~~~~~~~A~~~~~~~~~~~~~p~~~ 671 (783)
+.|++++|.+++++|.+.|+.+. ..+|..+. .+ ...+.+++..++..+|.+.|+.||..
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999998643 23442221 11 01123456667778889999999854
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-63 Score=568.39 Aligned_cols=476 Identities=20% Similarity=0.277 Sum_probs=453.6
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHH
Q 039931 248 SPNVVVYNALLNGYVKARDIDQANMLYEEMRSRD-IAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDI 326 (783)
Q Consensus 248 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 326 (783)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++.+.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 039931 327 TVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGR 406 (783)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 406 (783)
++.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999974 79999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 039931 407 LPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLE 486 (783)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 486 (783)
.+.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|++|.. +|+++||++|.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 4999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039931 487 MSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDI 566 (783)
Q Consensus 487 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 566 (783)
|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|. .||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 4899
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 039931 567 VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS-AGIVPNTVTYNTLMNG 645 (783)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~ 645 (783)
.+|++||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|++|.+ .|+.|+..+|++++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985 7999999999999999
Q ss_pred Hhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhh---hHH
Q 039931 646 VCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNI---QEN 721 (783)
Q Consensus 646 ~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~---~~~ 721 (783)
+++ |++++|.+++++ .++.||..+|++++.+|+.+|+++.|..+++++.+++|+ +..+|..|+++|+.. .++
T Consensus 472 l~r~G~~~eA~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 472 LGREGLLDEAYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHhcCCHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHH
Confidence 997 899999999876 468899999999999999999999999999999999986 788999999999864 467
Q ss_pred HHHHHHHHhcCCCcchhh
Q 039931 722 AEFFQETSEKSLFLDFLM 739 (783)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~ 739 (783)
.+..++|.++++...|..
T Consensus 548 ~~v~~~m~~~g~~k~~g~ 565 (697)
T PLN03081 548 AKVVETLKRKGLSMHPAC 565 (697)
T ss_pred HHHHHHHHHcCCccCCCe
Confidence 777777888888766544
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-37 Score=371.96 Aligned_cols=706 Identities=14% Similarity=0.047 Sum_probs=445.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHhh---------------cCCchHHHHHHH
Q 039931 29 LETRETAFAFFKLVVCDDSESTIRSCCIAAHIFAAEDLRLLAQDVVTWVISRI---------------GAGRSKHMVEFM 93 (783)
Q Consensus 29 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 93 (783)
..+++.|..+|+-+...++. ....+..++.++...+.+..|..++...+... ..+........+
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 216 (899)
T TIGR02917 138 LGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45677777777776543322 12334444555555554455544443332211 111222333333
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039931 94 CDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPS 173 (783)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~ 173 (783)
.......|.++.++..++..+...|++++|...++.+.+.. +.+...+......+...|++++|...|+++.+.++. +
T Consensus 217 ~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~ 294 (899)
T TIGR02917 217 RKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-Y 294 (899)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-c
Confidence 33333345666777777777777777777777777777664 233334444445556677777777777777766542 2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHH
Q 039931 174 NYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVV 253 (783)
Q Consensus 174 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~ 253 (783)
...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++| ...+..+.+... .+...
T Consensus 295 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A-------~~~~~~~~~~~~-~~~~~ 365 (899)
T TIGR02917 295 LPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEA-------IATLSPALGLDP-DDPAA 365 (899)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHH-------HHHHHHHHhcCC-CCHHH
Confidence 3344445566667777777777777776653 34556666777777777777777 455666554432 35667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 039931 254 YNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333 (783)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (783)
++.+...+.+.|++++|.+.|+++.+... .+...+..+...+...|+.++|.+.++.+.+.... .......++..+.+
T Consensus 366 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 366 LSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHh
Confidence 77777788888888888888888776532 24556666667777777777777777777665432 22344455666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDL 413 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 413 (783)
.|++++|..+++++.... +++..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.
T Consensus 444 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777776643 2356677777777777777777777777776653 23445566667777777777777777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 039931 414 LCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFV 493 (783)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (783)
++++.+... .+..++..+...+.+.|+.++|...++++.+.+.. +...+..++..+.+.|++++|..+++.+.+.. +
T Consensus 522 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 522 FEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred HHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 777776643 35666777777777777777777777777665432 55566667777777777777777777776542 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 039931 494 PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLI 573 (783)
Q Consensus 494 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 573 (783)
.+..+|..+...+.+.|++++|...|+++.+.... +...+..+...+.+.|++++|...++++.+.. +.+..++..++
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 45666777777777777777777777777665432 55666677777777777777777777776642 23466677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-ccHH
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC-DILD 652 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~ 652 (783)
..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.+.|+++.+.+ |+..++..+...+.. |+.+
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 77777777777777777776643 3455666666777777777777777777776532 444444445544443 6677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcC
Q 039931 653 RAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKS 732 (783)
Q Consensus 653 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~ 732 (783)
+|.+.++++++.. +.+...+..+...|.+.|++++|.++++++.+..|+ ++.+++.++++|...++ ..+.++++++
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~--~~A~~~~~~~ 829 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD--PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc--HHHHHHHHHH
Confidence 7777777666532 234455666666666777777777777777776665 66667777766655333 4455566665
Q ss_pred CCcchhhhHHHHhhhhhhhhhhhhhhHHHhh
Q 039931 733 LFLDFLMGCMTLNVTGDFCVQSMKLQTAAIG 763 (783)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (783)
+...|..... ...+|..+.+.|+.+.|...
T Consensus 830 ~~~~~~~~~~-~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 830 LKLAPNIPAI-LDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred HhhCCCCcHH-HHHHHHHHHHcCCHHHHHHH
Confidence 5554433222 23355566665655555544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-37 Score=372.57 Aligned_cols=711 Identities=13% Similarity=0.021 Sum_probs=559.2
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHhh---------------cCCchHHH
Q 039931 25 VMKLLETRETAFAFFKLVVCDDSESTIRSCCIAAHIFAAEDLRLLAQDVVTWVISRI---------------GAGRSKHM 89 (783)
Q Consensus 25 ~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 89 (783)
+.....+++.|+..+..+...++. ....+...++++...+.+..|...+...+... ..+....+
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A 246 (899)
T TIGR02917 168 LALAENRFDEARALIDEVLTADPG-NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEA 246 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 344556888899999887643332 23344555666666666666655554433221 11112222
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039931 90 VEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLG 169 (783)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 169 (783)
...+.......|.++..+......+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|+++.+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 325 (899)
T TIGR02917 247 EKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA 325 (899)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 222222222334455555566667788899999999999998876 2334556667778889999999999999998876
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC
Q 039931 170 PRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP 249 (783)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p 249 (783)
| .+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++| .+.|+++.+... .
T Consensus 326 p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A-------~~~~~~~~~~~~-~ 395 (899)
T TIGR02917 326 P-NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA-------AEYLAKATELDP-E 395 (899)
T ss_pred C-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH-------HHHHHHHHhcCC-C
Confidence 5 567778888899999999999999999998765 46778889999999999999988 567777766543 3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVA 329 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 329 (783)
+...+..+...+...|++++|.+.|+.+.+.+.. +......++..+.+.|++++|.++++.+.... +.+..++..+..
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 473 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGA 473 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 6677888889999999999999999999876543 34556667788899999999999999988753 346778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 039931 330 GLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPE 409 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 409 (783)
.+...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999886443 66778888999999999999999999998865 3467788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 410 AWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
|...++++.+.+. .+...+..++..+.+.|++++|..+++.+.+... .+...|..+...+.+.|++++|...|+.+.+
T Consensus 552 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999988754 3677888899999999999999999999987643 3778899999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 039931 490 IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTY 569 (783)
Q Consensus 490 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 569 (783)
.. +.+...+..+...+.+.|++++|...++++.+..+. +..++..++..+...|++++|..+++.+.+.+ +++...+
T Consensus 630 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 706 (899)
T TIGR02917 630 LQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGF 706 (899)
T ss_pred hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHH
Confidence 64 446777888999999999999999999999887433 67889999999999999999999999998764 4577788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-
Q 039931 570 NTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC- 648 (783)
Q Consensus 570 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~- 648 (783)
..+...+...|++++|.+.++++... .|+..++..++.++.+.|++++|.+.++++++.. ..+...+..+...+..
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 88899999999999999999999874 4666788888999999999999999999998742 2345566666666664
Q ss_pred ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQET 728 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~ 728 (783)
|+.++|.+.++++++.. +++..++..+...+.+.|+ ++|+.+++++.++.|+ ++.++..++.+|.. .++.+.+.+.
T Consensus 784 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~~~~A~~~ 859 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVE-KGEADRALPL 859 (899)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH-cCCHHHHHHH
Confidence 89999999999998853 3466788888889999999 8899999999999887 77888888888765 5667777777
Q ss_pred HhcCCCcchhhhHHHHhhhhhhhhhhhhhhHHHhhh
Q 039931 729 SEKSLFLDFLMGCMTLNVTGDFCVQSMKLQTAAIGR 764 (783)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (783)
+++++..+|.... ....++..+.+.|..++|...-
T Consensus 860 ~~~a~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 860 LRKAVNIAPEAAA-IRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777665333 3334788899999999887764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.6e-26 Score=275.52 Aligned_cols=588 Identities=12% Similarity=-0.001 Sum_probs=308.1
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----------------HHHHHHHHhc
Q 039931 89 MVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAI----------------TILFKSLLRV 152 (783)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~----------------~~ll~~l~~~ 152 (783)
+-+.+.+.....|.++.++..++..+.+.|+.++|.+.++++.+.. +.+.... ..+.+.+.+.
T Consensus 47 a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~ 125 (1157)
T PRK11447 47 VRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATT 125 (1157)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhC
Confidence 3344444444556778888888888888888888888888888876 3333332 2334467778
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhc
Q 039931 153 GDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKC 232 (783)
Q Consensus 153 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 232 (783)
|++++|.+.|+.+.+.++.................|+.++|++.++++.+.. +.+...+..+...+...|+.++|
T Consensus 126 g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eA---- 200 (1157)
T PRK11447 126 GRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEG---- 200 (1157)
T ss_pred CCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHH----
Confidence 8888888888888776553222222222222234578888888888887764 44566777777888788888777
Q ss_pred cchHHHHHHHHHCCCCCC--hHHH-----------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 039931 233 GAGRMIFDMIQEEGLSPN--VVVY-----------------NALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIV 293 (783)
Q Consensus 233 ~~a~~~~~~m~~~g~~p~--~~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 293 (783)
...++++.+...... ...| ...+..+-.....+.|...+.++......|+... ....
T Consensus 201 ---l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G 276 (1157)
T PRK11447 201 ---FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQG 276 (1157)
T ss_pred ---HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHH
Confidence 466777654311000 0001 1111111111122333444443333222222111 1223
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH------------
Q 039931 294 SGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPS-IFAFN------------ 360 (783)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~------------ 360 (783)
..+...|++++|...|++..+... .+...+..+...|.+.|++++|+..|++..+..+... ...|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 344556666666666666665432 1445555566666666666666666666655432211 11111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 039931 361 SIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIG 440 (783)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 440 (783)
.....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+.... +...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 11234455666666666666666543 223444555556666666666666666666655322 3444444555443 34
Q ss_pred CHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 039931 441 DLIGAQSLWNELNRRKIF--------PDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKL 512 (783)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 512 (783)
+.++|...++.+...... .....+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 556666655544322100 001123334455555666666666666665542 22344455555666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH---------HHHHHHHHHHcCCHH
Q 039931 513 NEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVT---------YNTLIGGYCKALDIV 583 (783)
Q Consensus 513 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---------~~~li~~~~~~g~~~ 583 (783)
++|...++++.+..+. ++..+..+...+...|+.++|...++.+......++... +..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 6666666666554322 333333333444556666666666655443222222111 122344455566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh-ccHHHHHHHHHHH
Q 039931 584 RADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN-TVTYNTLMNGVCC-DILDRAIIIAAKL 661 (783)
Q Consensus 584 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~-~~~~~A~~~~~~~ 661 (783)
+|.++++. .+++...+..+...+.+.|++++|++.|++.++. .|+ ...+..+...+.. |+.++|.+.++++
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666551 1234445555566666666666666666666552 233 2334444444333 5666666666655
Q ss_pred HHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCC
Q 039931 662 LKMAFVPN-VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISF 701 (783)
Q Consensus 662 ~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 701 (783)
.+ ..|+ ..++..+...+...|++++|.+.++++++..+
T Consensus 664 l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 664 PA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred hc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 54 2333 23344455555566666666666666665443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=1e-25 Score=270.44 Aligned_cols=573 Identities=10% Similarity=-0.025 Sum_probs=416.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 039931 109 ALLHGYLRVEMSAEVMEILYRMREVGIMPSESA-ITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRN 187 (783)
Q Consensus 109 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 187 (783)
.+.+.+.+.|++++|++.|+++.+.+ +|+... ...........|+.++|++.|+++++..| .+...+..+...+...
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHcc
Confidence 34557889999999999999999875 344321 11112222346999999999999999876 5777888999999999
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhc-------------cchHHHHHHHHHCCCCCChHHH
Q 039931 188 GCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKC-------------GAGRMIFDMIQEEGLSPNVVVY 254 (783)
Q Consensus 188 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~-------------~~a~~~~~~m~~~g~~p~~~~~ 254 (783)
|+.++|+..++++.+.. ..+..............+....+...+ ..+...+.........|+...
T Consensus 195 g~~~eAl~~l~~~~~~~-~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~- 272 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSP-AGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA- 272 (1157)
T ss_pred CCHHHHHHHHHHHhhCC-CchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-
Confidence 99999999999997642 111111111111111112222221111 122333443333222233222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HHHH---------
Q 039931 255 NALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPN-CTLY--------- 324 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~--------- 324 (783)
..+...+...|++++|+..|++.++.... +...+..+...+.+.|++++|...|++..+...... ...+
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 23456678899999999999999987433 778899999999999999999999999988654322 1112
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 325 ---DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGL 401 (783)
Q Consensus 325 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 401 (783)
......+.+.|++++|...|++..+..+. +...+..+...+...|++++|++.|++..+.. +.+...+..+...+
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 12244577899999999999999997544 67788889999999999999999999999864 23456666777766
Q ss_pred HhcCChhHHHHHHHHHHHcCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 039931 402 CKKGRLPEAWDLLCKMIEKGFP--------INKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSK 473 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 473 (783)
. .++.++|...++.+...... .....+..+...+...|++++|++.|++..+..+. +...+..+...|.+
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQ 507 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4 56789999988776543211 01223556777888999999999999999987654 67778889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---------HHHHHHHHHhc
Q 039931 474 AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFT---------FNIIINGFCKQ 544 (783)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~---------~~~li~~~~~~ 544 (783)
.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++... +..+...+...
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 999999999999998753 33455555555567789999999999998765543333322 23456778899
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 545 GRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMM 623 (783)
Q Consensus 545 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~ 623 (783)
|+.++|..+++. .+++...+..+...+.+.|++++|++.+++..+. .| +...+..++..|...|++++|.+.
T Consensus 587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999872 2456677888999999999999999999999984 45 678899999999999999999999
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHh-hccHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 039931 624 LDELVSAGIVPNTV-TYNTLMNGVC-CDILDRAIIIAAKLLKMAF--VP---NVVTTNVLLSHFCKQGMPEKTLLWGQKL 696 (783)
Q Consensus 624 ~~~m~~~g~~p~~~-~~~~li~~~~-~~~~~~A~~~~~~~~~~~~--~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 696 (783)
++...+. .|+.. .+..+...+. .|+.++|.+++++++...- .| +...+..+...+...|++++|+..++++
T Consensus 660 l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 660 LAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9988763 45543 3344444443 3899999999999887421 12 2245666677889999999999999999
Q ss_pred hhcC
Q 039931 697 SEIS 700 (783)
Q Consensus 697 ~~~~ 700 (783)
+...
T Consensus 738 l~~~ 741 (1157)
T PRK11447 738 MVAS 741 (1157)
T ss_pred Hhhc
Confidence 7533
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.6e-24 Score=226.81 Aligned_cols=542 Identities=12% Similarity=0.060 Sum_probs=368.5
Q ss_pred cccccccccccchHHHHHHHH-hcCCHHHHHHHHHHhhcCCCCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHH------
Q 039931 7 GYILKAFSQKFCPYFLVKVMK-LLETRETAFAFFKLVVCDDSESTIRSCCIAAHIFAAEDLRLLAQDVVTWVIS------ 79 (783)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------ 79 (783)
-|||++.+.++.+.++.++|. ..+|+..||.||+.+.+.++.+......+++|||+..++...|...+...+.
T Consensus 154 ~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v 233 (1018)
T KOG2002|consen 154 HFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCV 233 (1018)
T ss_pred HHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhH
Confidence 379999999999999999998 6789999999999988777777778888999999998776666544432211
Q ss_pred ------------hhcCCchHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHH
Q 039931 80 ------------RIGAGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS--ESAITIL 145 (783)
Q Consensus 80 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~l 145 (783)
..........++.+...+...+.||++.+.|.+.|...|++..+..+...+........ ..+|..+
T Consensus 234 ~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~ 313 (1018)
T KOG2002|consen 234 SALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQL 313 (1018)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 11122334566777777777889999999999999999999999999999887642222 3458899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc
Q 039931 146 FKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQT 225 (783)
Q Consensus 146 l~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 225 (783)
.+++...|++++|..+|.+..+..+.-.+..+--++..+.+.|+++.+...|++..+.. +.+..+...|...|...+.-
T Consensus 314 gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 314 GRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhh
Confidence 99999999999999999999887654335667788999999999999999999998864 55667888888888877522
Q ss_pred chHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCCHhHHHHHHHHHHccCC
Q 039931 226 SYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMR----SRDIAPDAVTFNIIVSGHCKYGG 301 (783)
Q Consensus 226 ~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t~~~ll~~~~~~g~ 301 (783)
.+.. +.|..++.+..+.- ..|...|-.+...+-+.. ...++..|.... ..+-.+.....|.+...+...|+
T Consensus 393 ~~~~---d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~ 467 (1018)
T KOG2002|consen 393 QEKR---DKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN 467 (1018)
T ss_pred hHHH---HHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC
Confidence 2221 23355666555543 237778888877776554 444477776654 44555778889999999999999
Q ss_pred hhHHHHHHHHHHhC---CCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCC
Q 039931 302 MEDGDRLLRDLSVS---GLLPNC------TLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSI-FAFNSIIAAYSRAGL 371 (783)
Q Consensus 302 ~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~ 371 (783)
+++|...|...... ...++. .+--.+...+-..++.+.|.+.+..+.+. .|+- ..|--+.......++
T Consensus 468 ~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~ 545 (1018)
T KOG2002|consen 468 IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNN 545 (1018)
T ss_pred hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccC
Confidence 99999999888765 122222 22223444555667788888888888775 2332 223333322233466
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHh------------
Q 039931 372 EENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGF-PINKVAFTVLLDGYFR------------ 438 (783)
Q Consensus 372 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~------------ 438 (783)
..+|...++...+.+ ..+...++.+...+.+..++..|.+-|+.+.+.-. .+|+++.-+|.+.|.+
T Consensus 546 ~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 546 LYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred cHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 777888877777654 33555666666677777777777776666655422 2466666666665542
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 439 IGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKL 518 (783)
Q Consensus 439 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 518 (783)
.+..++|+++|.++++..+. |...-|-+.-.++..|++.+|..+|.+..+... -+..+|..+.++|..+|++..|+++
T Consensus 625 kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHH
Confidence 23455666666666655443 555555555566666666666666666665431 2334455566666666666666666
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039931 519 EREMRQK-GLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 519 ~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 559 (783)
|+...+. ....++...+.|..++.+.|++.+|.+.+.....
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6654433 3333555566666666666666666666555554
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.7e-22 Score=229.50 Aligned_cols=580 Identities=12% Similarity=-0.012 Sum_probs=303.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 039931 117 VEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESL 196 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 196 (783)
.|++++|+..|+++++.. +.+..++..|...|.+.|++++|+..+++.++..| .|...+..+ ..+ +++++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccChhHHHH
Confidence 377777777777777776 34466677777777777777777777777777654 444444443 222 777777777
Q ss_pred HHHHHhCCCCCCHHhHHHHHHH--------HHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHH-HHHHHhcCCh
Q 039931 197 LHVMHKYMCVADFFAYNILINA--------YCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNAL-LNGYVKARDI 267 (783)
Q Consensus 197 ~~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~ 267 (783)
++++.+.. +.+..++..+... |.+.+ +| ...++ .......|+..+.... ...|.+.|++
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~e---qA-------l~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLP---VA-------RAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHH---HH-------HHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 77777654 3334444444444 44443 23 22333 2222233334433333 6777777777
Q ss_pred hHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc-cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 268 DQANMLYEEMRSRDIAPDAVTFNIIVSGHCK-YGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFED 346 (783)
Q Consensus 268 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (783)
++|++++.++.+.++. +..-...+..+|.. .++ +.+..+++. .+..+......+...|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 7777777777776543 33445555556665 355 666665442 2234666777777777777777777777777
Q ss_pred HHHCCCC-CCHHHHH------------------------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 039931 347 MFEKGIS-PSIFAFN------------------------------SIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCS 395 (783)
Q Consensus 347 m~~~g~~-p~~~~~~------------------------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 395 (783)
+...... |...+|- .++..+.+.++++.+.++.. +.|....
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-- 344 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM-- 344 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--
Confidence 6543221 2222221 11344445555554443311 2222222
Q ss_pred HHHHHH--HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 039931 396 SLLVGL--CKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR-K-IFPDAVAFSAYINGL 471 (783)
Q Consensus 396 ~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~p~~~~~~~li~~~ 471 (783)
..++.. ...+...++.+.+..|.+... -+....--+.....+.|+.++|.++|+..... + ..++....+-++..|
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 122211 122444455555555554421 13334444444455566666666666665442 1 112233333455555
Q ss_pred HccCC---hHHHHHH----------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 472 SKAGL---VDEAYGV----------------------FLEMSRI-GF-VP--NNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 472 ~~~g~---~~~A~~~----------------------~~~m~~~-~~-~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
.+.+. ..++..+ ....... +. ++ +...|..+..++.. ++.++|...+.+.
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A 502 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA 502 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 55444 2222222 1111100 01 22 34445555555544 5666666655555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H
Q 039931 523 RQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD-I 601 (783)
Q Consensus 523 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 601 (783)
... .|+......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|..++++..+.. |+ .
T Consensus 503 l~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~ 576 (987)
T PRK09782 503 EQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDN 576 (987)
T ss_pred HHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccH
Confidence 544 234333223333344566666666666665442 3444445555555666666666666666666532 32 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 039931 602 TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNV-VTTNVLLSH 679 (783)
Q Consensus 602 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~ 679 (783)
..+..+.......|++++|...+++.++ +.|+...|..+...+.. |+.++|...++++++ ..|+. ..++.+...
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 2233333333444666666666666654 23444444444443333 566666666666666 33533 344455555
Q ss_pred HHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcchhhhHH
Q 039931 680 FCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLMGCM 742 (783)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (783)
+...|+.++|+..+++++++.|+ ++..+..++.+|.. .++.+.++..+++++.++|....+
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~-lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQR-LDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCchh
Confidence 66666666666666666666665 56666666666544 455566666666666665544443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.1e-21 Score=224.41 Aligned_cols=612 Identities=11% Similarity=0.009 Sum_probs=435.5
Q ss_pred CCchHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039931 83 AGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLF 162 (783)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~ 162 (783)
.+....+++.+.......|.++.++..|+..|.+.|++++|+..+++..+.+ +.|...+..+ ..+ +++.+|..+|
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~y 131 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTTV 131 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHHH
Confidence 3555677888877777788889999999999999999999999999999986 3344444443 333 9999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHH--------HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHH-HHHHHhcCCcchHhhhcc
Q 039931 163 RDMIHLGPRPSNYTFNALILG--------FCRNGCIRIGESLLHVMHKYMCVADFFAYNIL-INAYCIRGQTSYALGKCG 233 (783)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 233 (783)
+++.+..| .+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|
T Consensus 132 e~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A----- 201 (987)
T PRK09782 132 EELLAQQK-ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQA----- 201 (987)
T ss_pred HHHHHhCC-CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH-----
Confidence 99999876 455555555554 5555 44554444 3222223445544444 8999999999888
Q ss_pred chHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHH
Q 039931 234 AGRMIFDMIQEEGLSPNVVVYNALLNGYVK-ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDL 312 (783)
Q Consensus 234 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 312 (783)
..++.++.+.+.. +..-...|...|.+ .++ +++..+++.. ++-+...+..+...+.+.|+.++|.++++++
T Consensus 202 --i~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 202 --DTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred --HHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 6788999887644 45557777788888 477 8888886642 3357888999999999999999999999987
Q ss_pred HhCCCC-CcHHHH------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 313 SVSGLL-PNCTLY------------------------------DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNS 361 (783)
Q Consensus 313 ~~~~~~-~~~~~~------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 361 (783)
...... |...++ -.++..+.+.++++.+.++.. +.|.....
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-- 345 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML-- 345 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH--
Confidence 654222 222222 112445566666665554422 23333322
Q ss_pred HHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C-CCCCHhhHHHHHHHHH
Q 039931 362 IIAAY--SRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEK-G-FPINKVAFTVLLDGYF 437 (783)
Q Consensus 362 li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~ 437 (783)
.+... ...+...++...++.|.+.. +-+....-.+.-...+.|+.++|.++++..... + ..++....+.++..|.
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 22222 23466777777777777652 225555555555677899999999999998873 1 2335556667888888
Q ss_pred hcCC---HHHHHHH----------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 039931 438 RIGD---LIGAQSL----------------------WNELNRR-KI-FP--DAVAFSAYINGLSKAGLVDEAYGVFLEMS 488 (783)
Q Consensus 438 ~~g~---~~~A~~~----------------------~~~~~~~-~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 488 (783)
+.+. ...+..+ .+..... +. .+ +...|..+...+.. ++.++|...+.+..
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 7766 3333222 1111111 11 23 56777888877776 89999999888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 039931 489 RIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVT 568 (783)
Q Consensus 489 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 568 (783)
.. .|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...+++.++.. +++...
T Consensus 504 ~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l 578 (987)
T PRK09782 504 QR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNAL 578 (987)
T ss_pred Hh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHH
Confidence 65 477655445555667899999999999998665 3445556677888899999999999999999864 223334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHh
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVT-YNTLMNGVC 647 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~ 647 (783)
+..+.......|++++|...+++..+ +.|+...|..+..++.+.|++++|+..+++.++ ..|+... ++.+...+.
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 44444455566999999999999997 568888999999999999999999999999987 4576644 444444455
Q ss_pred h-ccHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHH
Q 039931 648 C-DILDRAIIIAAKLLKMAFVPN-VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFF 725 (783)
Q Consensus 648 ~-~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~ 725 (783)
. |+.++|+..++++++ ..|+ ...+..+..++...|++++|+..+++++++.|+ +..+....++.... +.+++.+
T Consensus 655 ~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~-~~~~~~a 730 (987)
T PRK09782 655 DSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQ-RFNFRRL 730 (987)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHH-HHHHHHH
Confidence 4 899999999999998 4564 477888988999999999999999999999987 66666666766533 5677777
Q ss_pred HHHHhcCCCcchhhh
Q 039931 726 QETSEKSLFLDFLMG 740 (783)
Q Consensus 726 ~~~~~~~~~~~~~~~ 740 (783)
.+.++++...++...
T Consensus 731 ~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 731 HEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHhhcCccch
Confidence 777777777666443
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.7e-18 Score=183.30 Aligned_cols=575 Identities=13% Similarity=0.042 Sum_probs=414.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 039931 120 SAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHV 199 (783)
Q Consensus 120 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 199 (783)
++.|.+.|...++.. ++++-..-.-.......|++..|+.+|..++...|.--+...-.+..++.+.|+.+.|+..|.+
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 589999999998875 4555544444444556789999999999988766543333344556777899999999999999
Q ss_pred HHhCCCCCC-HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 200 MHKYMCVAD-FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMR 278 (783)
Q Consensus 200 m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 278 (783)
..+.. |+ +.++..|.-.-....+. + .++.|..++........ -|+++.+.|...|.-.|++..++.+...+.
T Consensus 225 alqLd--p~~v~alv~L~~~~l~~~d~-~---s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 225 ALQLD--PTCVSALVALGEVDLNFNDS-D---SYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHhcC--hhhHHHHHHHHHHHHHccch-H---HHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 99764 42 22332222211111221 1 12334555555544332 378889999999999999999999999988
Q ss_pred hCCCC--CCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039931 279 SRDIA--PDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSI 356 (783)
Q Consensus 279 ~~g~~--p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 356 (783)
..... .-..+|-.+.++|-..|++++|...|.+..+.....-+..+-.+..+|.+.|+++.+...|++.....+. +.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~ 376 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NY 376 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hH
Confidence 75311 1234588899999999999999999998887654333445566888999999999999999999987443 67
Q ss_pred HHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHhh
Q 039931 357 FAFNSIIAAYSRAG----LEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMI----EKGFPINKVA 428 (783)
Q Consensus 357 ~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~ 428 (783)
.+...|...|...+ ..++|..++.+..+.- +.|...|..+...+....-+ .++..+.... ..+..+.+..
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHH
Confidence 78888888888775 5677888888777654 44777787777776655443 3366666544 4566678899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH-H
Q 039931 429 FTVLLDGYFRIGDLIGAQSLWNELNRR---KIFPDA------VAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNF-A 498 (783)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~ 498 (783)
.|.+...+...|++..|...|+..... ...+|. .+--.+...+-..++.+.|.+.+..+.+. .|+.+ .
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ 532 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDA 532 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHH
Confidence 999999999999999999999988765 122222 22334455666778999999999999986 36544 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTG-LVPDIVTYNTLIGGYC 577 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~ 577 (783)
|..+.-.....+...+|...++......- .++..++.+...+.+...+..|.+-|....+.- ..+|..+..+|.+.|.
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 44444333345788899999999887643 367777777878888888999988777766532 2356666666766554
Q ss_pred H------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 578 K------------ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNG 645 (783)
Q Consensus 578 ~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 645 (783)
+ .+..++|+++|.+.++.. +-|...-|-+.-+++..|++.+|..+|.+..+... -...+|..+-+.
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHC 689 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHH
Confidence 3 345778999999988732 34778888899999999999999999999987543 122244444444
Q ss_pred Hh-hccHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHH-HHHHH
Q 039931 646 VC-CDILDRAIIIAAKLLKMAF-VPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDET-SYKIM 711 (783)
Q Consensus 646 ~~-~~~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~-~~~~l 711 (783)
|. .+++..|++.|+...++-. .-+..+...|..++.+.|.+.+|.+++.++....|. |+. -+|..
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~-~~~v~FN~a 757 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS-NTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc-cchHHhHHH
Confidence 33 3899999999999765433 346677889999999999999999999999999987 554 34443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=6.2e-21 Score=192.72 Aligned_cols=443 Identities=18% Similarity=0.127 Sum_probs=360.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 039931 254 YNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333 (783)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (783)
-..|..-..+.|++++|.+--...-..+.. +....-.+-..+.+..+.+...+.-....+.. ..-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 456677788899999999987766554322 33333344456666667776655544444432 2346789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTC-SSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~ 412 (783)
.|+++.|+.+++.+++..++ .+..|..+..++...|+.+.|.+.|.+..+. .|+.... +.+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999997555 7889999999999999999999999999885 4654443 445555667899999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 039931 413 LLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGF 492 (783)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 492 (783)
.+.+.++.... -...|+.|...+...|++..|+..|++..+..+. -...|-.|...|...+.+++|+..+.+.....
T Consensus 206 cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 99998887433 4578999999999999999999999999887433 34678889999999999999999999987752
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHH
Q 039931 493 VPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPD-IVTYNT 571 (783)
Q Consensus 493 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 571 (783)
+...+.+..+...|-..|.++.|+..+++.++..+. =+..|+.|..++-..|++.+|...|.+.+.. .|+ ..+.+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHH
Confidence 334567888888899999999999999999987433 3678999999999999999999999999985 454 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhh-
Q 039931 572 LIGGYCKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-VTYNTLMNGVCC- 648 (783)
Q Consensus 572 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~- 648 (783)
|...|...|.+++|..++....+ +.|.. ...+.|...|-+.|++++|+..|++.++ +.|+. ..|+.+-..+-.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 99999999999999999999997 67765 6789999999999999999999999886 78876 467777666554
Q ss_pred ccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRA 714 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 714 (783)
|+.+.|++.+.+++. +.|.- ..++.|.+.|...|+..+|++.++.++++.|++ +.+|..++-.
T Consensus 436 g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf-pdA~cNllh~ 499 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF-PDAYCNLLHC 499 (966)
T ss_pred hhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC-chhhhHHHHH
Confidence 889999999999988 66865 678899999999999999999999999999884 4455555443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=3e-20 Score=187.86 Aligned_cols=433 Identities=15% Similarity=0.087 Sum_probs=329.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
.|.+-..+.|++.+|.+.-...-+.. +.+......+-.++....+.+.... .....+. ..+.-..+|..+.
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a------~~~~a~r--~~~q~ae~ysn~a 123 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSA------GSLLAIR--KNPQGAEAYSNLA 123 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhh------hhhhhhh--ccchHHHHHHHHH
Confidence 34444556666666666544433322 2223333334444555555544421 1111111 1122456788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHH-HHHHHHHHhcCCH
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLY-DITVAGLCWAGRL 337 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~ 337 (783)
+.+-..|++++|+.+|+.|++.... ....|..+..++...|+.+.|.+.|.+.++. .|+.... +.+...+-..|++
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhccc
Confidence 8888888888888888888876433 5667888888888888888888888887775 3443332 3344445567899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 039931 338 DEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS-SCTCSSLLVGLCKKGRLPEAWDLLCK 416 (783)
Q Consensus 338 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 416 (783)
++|...+.+.++..+. =.+.|+.|...+-..|+...|+..|++..+.+ |+ ...|..|...|...+.++.|...+.+
T Consensus 201 ~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 201 EEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred chhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 9999998888875332 35678999999999999999999999998753 44 46788899999999999999999988
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 039931 417 MIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNN 496 (783)
Q Consensus 417 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 496 (783)
....... ...++..+...|...|.++-|++.+++..+..+. -...|+.|..++-..|++.+|.+.+++..... +.-.
T Consensus 278 Al~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ha 354 (966)
T KOG4626|consen 278 ALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHA 354 (966)
T ss_pred HHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccH
Confidence 8776433 6778888888999999999999999999887443 46789999999999999999999999998853 3345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 039931 497 FAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPD-IVTYNTLIGG 575 (783)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~ 575 (783)
...+.|...|...|.+++|..+|.....-.+. -...++.|...|-+.|++++|+..|++.++ +.|+ ...|+.+...
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchH
Confidence 67888999999999999999999998875322 356788899999999999999999999998 5786 5789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039931 576 YCKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT 636 (783)
Q Consensus 576 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 636 (783)
|-..|+.+.|++.+.+.+. +.|.. ..++.|...|-..|++.+|+.-|++.++ ++||.
T Consensus 432 ~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 9999999999999999987 56764 7788999999999999999999999886 56765
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=8.5e-20 Score=195.84 Aligned_cols=299 Identities=12% Similarity=0.078 Sum_probs=160.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCh
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS---SCTCSSLLVGLCKKGRL 407 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~ 407 (783)
+...|++++|...|+++.+.++. +..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34556666666666666654322 444566666666666666666666666655321111 13345555556666666
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHHHHHH
Q 039931 408 PEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDA----VAFSAYINGLSKAGLVDEAYGV 483 (783)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~ 483 (783)
++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666665542 224455556666666666666666666665554332211 1233444555556666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039931 484 FLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLV 563 (783)
Q Consensus 484 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 563 (783)
|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 66655432 22234455555556666666666666666555432222344555555666666666666666665553 3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 039931 564 PDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCN---IRKMNQAAMMLDELVSAGIVPNT 636 (783)
Q Consensus 564 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 636 (783)
|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..++. .|+.++++.++++|.+.++.|+.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 44444455555566666666666666655542 4555555555555443 33555666666666554444443
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.7e-19 Score=193.57 Aligned_cols=301 Identities=17% Similarity=0.095 Sum_probs=165.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHh
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPN---CTLYDITVAGLCW 333 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 333 (783)
....+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456677888899999999887643 2455677777778888888888888887776532221 2345666677777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSS----CTCSSLLVGLCKKGRLPE 409 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~ 409 (783)
.|++++|..+|+++.+... ++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 7777777777777766422 35666777777777777777777777777665422211 123344445555555555
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 410 AWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
|...++++.+... .+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|++.|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555554421 133344445555555555555555555554432221123344444445555555555555554444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCC
Q 039931 490 IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCK---QGRMKPAIDAFMDMYRTGLVP 564 (783)
Q Consensus 490 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p 564 (783)
. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|.+.++.|
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 3 233333344444444444455554444444443 3444444444444332 234444444444444443333
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.6e-17 Score=186.02 Aligned_cols=431 Identities=12% Similarity=-0.026 Sum_probs=233.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (783)
+..+...|.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++..++..| .+...|..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 445566667777777777777776655 34556666666677777777777777777766554 445566666777777
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 039931 187 NGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARD 266 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 266 (783)
.|++++|+..|......+-..+......+...+.+ .+ ........+.. +++..++..+.. |.....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~a-------~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~ 272 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKK-----FA-------ESKAKEILETK-PENLPSVTFVGN-YLQSFR 272 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH-----HH-------HHHHHHHHhcC-CCCCCCHHHHHH-HHHHcc
Confidence 77777776666555433211111111111111110 01 01111111111 111122222211 111111
Q ss_pred hhHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 267 IDQANMLYEEMRSRDIAPDA-VTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFE 345 (783)
Q Consensus 267 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (783)
...+..-+..-.+. .|+. ..+..+.. ... -....+++++|.+.|+
T Consensus 273 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~-------------------------------~~~-e~~~~~~y~~A~~~~~ 318 (615)
T TIGR00990 273 PKPRPAGLEDSNEL--DEETGNGQLQLGL-------------------------------KSP-ESKADESYEEAARAFE 318 (615)
T ss_pred CCcchhhhhccccc--ccccccchHHHHH-------------------------------HHH-HhhhhhhHHHHHHHHH
Confidence 11111111110000 0000 00000000 000 0122355666666666
Q ss_pred HHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 039931 346 DMFEKG-ISP-SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFP 423 (783)
Q Consensus 346 ~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (783)
+..+.+ ..| +...|+.+...+...|++++|+..|++..+.. +-+...|..+...+...|++++|...+++.++...
T Consensus 319 ~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p- 396 (615)
T TIGR00990 319 KALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS- 396 (615)
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 666543 112 34456666666666777777777777766543 11244566666666677777777777777666532
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 424 INKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503 (783)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 503 (783)
.+..++..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++..+.. +.+...++.+.
T Consensus 397 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg 474 (615)
T TIGR00990 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYG 474 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 25666667777777777777777777777665433 45566666667777777777777777766542 33456667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHH
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLLPDNF------TFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGY 576 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~ 576 (783)
..+...|++++|.+.|++........+.. .++.....+...|++++|..++++.++. .| +...+..+...+
T Consensus 475 ~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 77777777777777777766653221111 1222222334467888888888877764 34 345677777888
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 039931 577 CKALDIVRADELVNKMYA 594 (783)
Q Consensus 577 ~~~g~~~~A~~~~~~m~~ 594 (783)
.+.|++++|++.|++..+
T Consensus 553 ~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 553 LQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 888888888888887776
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=6e-17 Score=182.99 Aligned_cols=428 Identities=14% Similarity=0.016 Sum_probs=295.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 039931 141 AITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220 (783)
Q Consensus 141 ~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 220 (783)
.+......+.+.|++++|+..|++.++.. |+...|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34566777888899999999999888754 566778888888888899999998888888764 345667888888888
Q ss_pred hcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 039931 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYG 300 (783)
Q Consensus 221 ~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 300 (783)
..|++++|+ ..|......+...+.. ...++..+.. ..+........+.. +++..++..+.. +....
T Consensus 206 ~lg~~~eA~-------~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~ 271 (615)
T TIGR00990 206 GLGKYADAL-------LDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSF 271 (615)
T ss_pred HcCCHHHHH-------HHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHc
Confidence 888888884 3333333221111111 1111111111 12222222322221 112122222111 11100
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHHcCCHHHHH
Q 039931 301 GMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPS-IFAFNSIIAA---YSRAGLEENAF 376 (783)
Q Consensus 301 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~---~~~~g~~~~A~ 376 (783)
... .+..-++...+. .|+ ...+..+... ....+++++|.
T Consensus 272 ~~~-----------------------------------~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 272 RPK-----------------------------------PRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred cCC-----------------------------------cchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 000 000001111110 000 0011111111 13357899999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 377 EAYKIMHQFG-LTP-SSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 377 ~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
+.|+...+.+ ..| +...+..+...+...|++++|+..+++.++.... +...|..+...+...|++++|...|++..+
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998865 223 4456788888899999999999999999987433 567888999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 455 RKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTF 534 (783)
Q Consensus 455 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 534 (783)
..+. +...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+..+. +...+
T Consensus 394 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~ 470 (615)
T TIGR00990 394 LNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVY 470 (615)
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 7544 67889999999999999999999999999864 345677888889999999999999999999886433 67889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hh------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 039931 535 NIIINGFCKQGRMKPAIDAFMDMYRTGLVPD--IV------TYNTLIGGYCKALDIVRADELVNKMYAGGLDPD-ITTYN 605 (783)
Q Consensus 535 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~ 605 (783)
+.+...+...|++++|...|++.++. .|+ .. .++..+..+...|++++|.+++++..+. .|+ ...+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~ 546 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVA 546 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHH
Confidence 99999999999999999999999875 232 11 1222333344579999999999998874 454 46788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 606 IRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 606 ~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
.+...+.+.|++++|+..|++..+.
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999863
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=2.5e-16 Score=177.13 Aligned_cols=332 Identities=11% Similarity=0.003 Sum_probs=258.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 039931 254 YNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333 (783)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (783)
....+..+.+.|++++|+.+++........ +...+..++.+....|++++|.+.++++....+. +...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 345567788899999999999999887554 3445555556677799999999999999886533 45667778888899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDL 413 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 413 (783)
.|++++|...+++.....+. +...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999999886433 5778888899999999999999999888765432 23333333 347788999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH----HHHHHHHHHh
Q 039931 414 LCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDE----AYGVFLEMSR 489 (783)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 489 (783)
++.+.+....++......+...+.+.|++++|...++++.+..+. +...+..+...+...|++++ |...|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 998887754445555566677888999999999999998887544 67778888888999999885 7888988887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-H
Q 039931 490 IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIV-T 568 (783)
Q Consensus 490 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~ 568 (783)
.. +.+...+..+...+.+.|++++|...+++.....+. +...+..+...+.+.|++++|...|+++.+. .|+.. .
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~ 354 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKW 354 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHH
Confidence 53 345667888888899999999999999998887544 5667777888889999999999999988875 45543 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYAG 595 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 595 (783)
+..+..++...|+.++|.+.|++..+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 444567788899999999999988873
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.9e-16 Score=178.08 Aligned_cols=335 Identities=10% Similarity=0.031 Sum_probs=258.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFC 185 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (783)
-...++..+.+.|++++|+.+++..+... +.+...+..++.++...|++++|...|+++++..| .+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 35566778889999999999999988876 44566667777888889999999999999998876 56778888899999
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 039931 186 RNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKAR 265 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 265 (783)
..|++++|...++++.+.. +.+...+..+...+...|+.++| ...+..+...... +...+..+ ..+.+.|
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA-------~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g 191 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQA-------ISLARTQAQEVPP-RGDMIATC-LSFLNKS 191 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHH-------HHHHHHHHHhCCC-CHHHHHHH-HHHHHcC
Confidence 9999999999999998764 45677888889999999999988 4566666554332 33334333 3478889
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHH----HH
Q 039931 266 DIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDE----AM 341 (783)
Q Consensus 266 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~ 341 (783)
++++|...++.+.+....++...+..+...+...|++++|.+.++++..... .+...+..+...+...|++++ |.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 9999999999988765444555555666778888999999999998887653 356677778888888888875 78
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 039931 342 EFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKG 421 (783)
Q Consensus 342 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 421 (783)
..|++..+..+. +...+..+...+.+.|++++|+..+++..+... .+...+..+...+.+.|++++|...++.+.+.+
T Consensus 271 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 271 EHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888876444 677888888888889999999998888887642 245566777888888899999988888888764
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 039931 422 FPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRK 456 (783)
Q Consensus 422 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 456 (783)
.. +...+..+...+...|+.++|...|++..+..
T Consensus 349 P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 GV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred cc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33 33344445667888888888888888887763
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=3.7e-16 Score=179.73 Aligned_cols=417 Identities=12% Similarity=-0.003 Sum_probs=239.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
+.++....-.+......|+.++|+.++.+..... +.+...+..+...+.+.|++++|..+|++.++..| .+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 4556666667778888999999999999988643 45666788999999999999999999999988765 556677788
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHH
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNG 260 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 260 (783)
+..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++| ...+++..+..+. +...+..+...
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~A-------l~~l~~al~~~P~-~~~~~~~la~~ 159 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDE-------LRAMTQALPRAPQ-TQQYPTEYVQA 159 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHH-------HHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 889999999999999999998764 45566 88888889999999988 5677777765433 56667778888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHh------HHHHHHHHHH-----ccCCh---hHHHHHHHHHHhC-CCCCcHH-HH
Q 039931 261 YVKARDIDQANMLYEEMRSRDIAPDAV------TFNIIVSGHC-----KYGGM---EDGDRLLRDLSVS-GLLPNCT-LY 324 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~ 324 (783)
+...|+.++|++.++.... .|+.. ....++.... ..+++ ++|.+.++.+.+. ...|+.. .+
T Consensus 160 l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 8888999999998887654 23310 1111122111 11122 4455555555533 1112111 10
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHH
Q 039931 325 ----DITVAGLCWAGRLDEAMEFFEDMFEKGIS-PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTP---SSCTCSS 396 (783)
Q Consensus 325 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ 396 (783)
...+..+...|++++|+..|+++.+.+.. |+. ....+...|...|++++|+..|+++.+..... .......
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 01122334456666666666666654321 221 11113455666666666666666655432110 0123344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc
Q 039931 397 LLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD---AVAFSAYINGLSK 473 (783)
Q Consensus 397 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~ 473 (783)
+..++...|++++|.+.++.+.+...+ ....+.. ....|+ ...+..+...+..
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~-~~~~~~~-----------------------~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPP-FLRLYGS-----------------------PTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCc-eEeecCC-----------------------CCCCCCchHHHHHHHHHHHHHH
Confidence 444555666666666666665544210 0000000 000111 1123334444445
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 039931 474 AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDA 553 (783)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 553 (783)
.|+.++|++.++++.... +.+...+..+...+...|++++|++.+++.....+. +...+...+..+...|++++|..+
T Consensus 372 ~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 372 SNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHH
Confidence 555555555555554431 233344444455555555555555555555544221 233444444444555555555555
Q ss_pred HHHHHH
Q 039931 554 FMDMYR 559 (783)
Q Consensus 554 ~~~m~~ 559 (783)
++++++
T Consensus 450 ~~~ll~ 455 (765)
T PRK10049 450 TDDVVA 455 (765)
T ss_pred HHHHHH
Confidence 555554
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=7.2e-16 Score=177.35 Aligned_cols=426 Identities=13% Similarity=-0.010 Sum_probs=277.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNIL 215 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (783)
+.+.....-.+......|+.++|+++|.+.....+ .+...+..+...+...|++++|..++++.++.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34555556667778889999999999999986433 556678899999999999999999999988764 4556777888
Q ss_pred HHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 039931 216 INAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSG 295 (783)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 295 (783)
...+...|+.++| ...+++..+... .+.. +..+...+...|+.++|+..++++.+..+. +...+..+...
T Consensus 90 a~~l~~~g~~~eA-------~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~ 159 (765)
T PRK10049 90 ILTLADAGQYDEA-------LVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQA 159 (765)
T ss_pred HHHHHHCCCHHHH-------HHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 8889999999998 567777766532 2455 888888999999999999999999987443 45556667777
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 039931 296 HCKYGGMEDGDRLLRDLSVSGLLPNCT------LYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRA 369 (783)
Q Consensus 296 ~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 369 (783)
+...+..+.|.+.++.+.. .|+.. ....++..... ......
T Consensus 160 l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~------------------------------~~~~~~ 206 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFM------------------------------PTRSEK 206 (765)
T ss_pred HHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc------------------------------cccChh
Confidence 8888888889888876654 22210 00111111100 000111
Q ss_pred CCH---HHHHHHHHHHHhC-CCCCCHH-HHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 039931 370 GLE---ENAFEAYKIMHQF-GLTPSSC-TCS----SLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIG 440 (783)
Q Consensus 370 g~~---~~A~~~~~~m~~~-~~~p~~~-~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 440 (783)
+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+........+...|...|
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 112 4444444444432 1111110 000 001223344555555555555555432101111122344555555
Q ss_pred CHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-----------CCCCH---HHHHHHH
Q 039931 441 DLIGAQSLWNELNRRKIFP---DAVAFSAYINGLSKAGLVDEAYGVFLEMSRIG-----------FVPNN---FAYNSLI 503 (783)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~---~~~~~li 503 (783)
++++|+..|+++.+..... .......+..++.+.|++++|.+.++.+.+.. -.|+. ..+..+.
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 5555555555554432111 12334444455566666666666666655431 12342 3456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHcCCH
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPD-IVTYNTLIGGYCKALDI 582 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 582 (783)
..+...|++++|+++++++....+. +...+..+...+...|++++|++.+++.++. .|+ ...+..++..+...|++
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCH
Confidence 8888999999999999999887544 6888999999999999999999999999985 465 66777778888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 583 VRADELVNKMYAGGLDPDITTYNIRMHGY 611 (783)
Q Consensus 583 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 611 (783)
++|..+++++++ ..|+....-.+-..+
T Consensus 444 ~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 444 RQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 999999999998 467655544444444
No 25
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=3.7e-13 Score=143.75 Aligned_cols=623 Identities=13% Similarity=0.083 Sum_probs=406.3
Q ss_pred hhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 039931 95 DDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN 174 (783)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 174 (783)
...+..|.++..|..|...|-..|+.++++..+-.+-..+ +.|..-|..+.......|++++|.-+|.++++..| ++.
T Consensus 164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-~n~ 241 (895)
T KOG2076|consen 164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANP-SNW 241 (895)
T ss_pred HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-cch
Confidence 3344557778899999999999999999999888777766 56678999999999999999999999999999877 454
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHH----HHHHHhcCCcchHhhhccchHHHHHHHHH-CCCCC
Q 039931 175 YTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNIL----INAYCIRGQTSYALGKCGAGRMIFDMIQE-EGLSP 249 (783)
Q Consensus 175 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~a~~~~~~m~~-~g~~p 249 (783)
...---...|-+.|+...|...|.++.....+.|..-...+ ++.+...++.+.|+ +.++.... .+-.-
T Consensus 242 ~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~-------~~le~~~s~~~~~~ 314 (895)
T KOG2076|consen 242 ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA-------KALEGALSKEKDEA 314 (895)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHhhccccc
Confidence 44444567788999999999999999887533333333333 44555566666663 44444443 12223
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHH----------------------HH----HHHHHHccCChh
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTF----------------------NI----IVSGHCKYGGME 303 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----------------------~~----ll~~~~~~g~~~ 303 (783)
+...++.++..|.+...++.|......+..+..++|..-+ .. +.-++......+
T Consensus 315 ~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e 394 (895)
T KOG2076|consen 315 SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERE 394 (895)
T ss_pred cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccc
Confidence 5567889999999999999999998888763222222221 11 112334445555
Q ss_pred HHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 304 DGDRLLRDLSVSG--LLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKI 381 (783)
Q Consensus 304 ~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (783)
....+.......+ +.-+...|.-+..+|...|++.+|+.+|..+...-..-+...|-.+..+|...|.+++|.+.|..
T Consensus 395 ~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 395 LLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred hHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555555566655 44566788899999999999999999999999876656788999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--------cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 382 MHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIE--------KGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELN 453 (783)
Q Consensus 382 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (783)
.+... +-+...-..|...+.+.|+.++|.+.++.+.. .+..|+....-...+.+.+.|+.++=..+-..|.
T Consensus 475 vl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 475 VLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 98864 22445566677788999999999999998652 2344555566667778888898887666555554
Q ss_pred hCC-----CCC-----------------CHHHHHHHHHHHHccCChHHHHHH------HHHHHhCCCCCCH--HHHHHHH
Q 039931 454 RRK-----IFP-----------------DAVAFSAYINGLSKAGLVDEAYGV------FLEMSRIGFVPNN--FAYNSLI 503 (783)
Q Consensus 454 ~~~-----~~p-----------------~~~~~~~li~~~~~~g~~~~A~~~------~~~m~~~~~~p~~--~~~~~li 503 (783)
... +.| .......++.+-.+.++.....+- +.--...|+.-+. ..+.-++
T Consensus 554 ~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i 633 (895)
T KOG2076|consen 554 DDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELI 633 (895)
T ss_pred HHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHH
Confidence 321 001 111122223333333221111111 1111111222222 2345567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHc-CC--CC-ChhHHHHHHH
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLL-PDNF----TFNIIINGFCKQGRMKPAIDAFMDMYRT-GL--VP-DIVTYNTLIG 574 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--~p-~~~~~~~li~ 574 (783)
..+++.++.++|..+...+...... -+.. .-...+.+.+..+++..|...++.|+.. +. .| -...|+...+
T Consensus 634 ~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s 713 (895)
T KOG2076|consen 634 LSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFS 713 (895)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 7888999999999998887765221 1222 2234456677889999999999998864 11 22 2345666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh-----h
Q 039931 575 GYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNG-VC-----C 648 (783)
Q Consensus 575 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~-----~ 648 (783)
.+.+.++-.--.+++..+....-.-+...+....+....++.+..|+..+-+... ..||....+..+.. +. +
T Consensus 714 ~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr 791 (895)
T KOG2076|consen 714 YFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQR 791 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHH
Confidence 6666665544445554444322111233444445666778899999997776654 35664444333321 11 1
Q ss_pred ---c---cHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC------C------HHHHH
Q 039931 649 ---D---ILDRAIIIAAKLLKMAFV-PNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDF------D------ETSYK 709 (783)
Q Consensus 649 ---~---~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~------d------~~~~~ 709 (783)
. .+-+++.++.+..+.... -...++..+..+|-..|-+.-|..+|+++++..|.+ | ..+||
T Consensus 792 ~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~N 871 (895)
T KOG2076|consen 792 RVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYN 871 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhh
Confidence 1 344666666665442211 134677789999999999999999999999986541 1 12333
Q ss_pred HHHHHHhhhhHHHHHHHHHHhc
Q 039931 710 IMDRAYHNIQENAEFFQETSEK 731 (783)
Q Consensus 710 ~l~~~y~~~~~~~~~~~~~~~~ 731 (783)
.- =+|.. .++...|++.+++
T Consensus 872 L~-LIY~~-SGn~~lArqil~k 891 (895)
T KOG2076|consen 872 LH-LIYKK-SGNMQLARQILEK 891 (895)
T ss_pred hh-hhhcc-CCcHHHHHHHHHh
Confidence 32 24432 5777888877765
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=8.6e-14 Score=148.53 Aligned_cols=614 Identities=13% Similarity=0.037 Sum_probs=405.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 039931 109 ALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG 188 (783)
Q Consensus 109 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 188 (783)
..++...-.|+.++|.+++.++++.. +.....|.+|...|-..|+.+++...+--+....| .|...|..+.......|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcc
Confidence 33444455599999999999999987 56788999999999999999999999888877766 56688999999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHH----HHHHHHhc
Q 039931 189 CIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNA----LLNGYVKA 264 (783)
Q Consensus 189 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~----li~~~~~~ 264 (783)
++++|.-.|.+.++.. +++....-.-...|-+.|+...|. .-|.++.....+.|..-... .+..+...
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am-------~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAM-------ETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHH-------HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999876 566666666777888999999884 55666665432222222333 45567777
Q ss_pred CChhHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCC--------------------------
Q 039931 265 RDIDQANMLYEEMRSR-DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGL-------------------------- 317 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------------------------- 317 (783)
++-+.|.+.++..... +-.-+...++.++..+.+...++.|......+.....
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 8889999999988773 1223556688888888999999998888777765211
Q ss_pred -CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 039931 318 -LPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKG--ISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTC 394 (783)
Q Consensus 318 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 394 (783)
.++..+. -+.-++......+....+...+.... +.-++..|..+..+|.+.|++.+|+.+|..+......-+...|
T Consensus 374 ~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 1222221 12223344444444444445555544 4446778899999999999999999999999987655577889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHH
Q 039931 395 SSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR--------RKIFPDAVAFSA 466 (783)
Q Consensus 395 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~p~~~~~~~ 466 (783)
..+..+|...|..++|.+.++.++...+ .+...-.+|...+-+.|+.++|.+++..+.. .+..|+......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 9999999999999999999999998843 3777888899999999999999999998642 223444444455
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCC----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHH-----
Q 039931 467 YINGLSKAGLVDEAYGVFLEMSRIG----------------------FVPNNFAYNSLIAGFCNRGKLNEALKLE----- 519 (783)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~m~~~~----------------------~~p~~~~~~~li~~~~~~g~~~~A~~l~----- 519 (783)
....+.+.|+.++-+.+-..|+..+ .+....+...++.+-.+.++.....+-.
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~ 611 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE 611 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence 5667788888877665555554321 1111222233333333333322211111
Q ss_pred -HHHHHCCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCh---hHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 520 -REMRQKGLLPD-N-FTFNIIINGFCKQGRMKPAIDAFMDMYRTGL--VPDI---VTYNTLIGGYCKALDIVRADELVNK 591 (783)
Q Consensus 520 -~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~li~~~~~~g~~~~A~~~~~~ 591 (783)
.--...|..-+ . ..+.-++..+++.+++++|..+...+..... .++. ..-...+.+.+..+++..|...+..
T Consensus 612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11111122211 1 2355677888999999999999888876431 1221 1234556677789999999999998
Q ss_pred HHHC-CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---hhccHHHHHHHHHHHHHc
Q 039931 592 MYAG-GL--DPD-ITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGV---CCDILDRAIIIAAKLLKM 664 (783)
Q Consensus 592 m~~~-g~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~~~~~A~~~~~~~~~~ 664 (783)
|... +. .|. ...||...+...+.|+-.--.+++..+.. ..|+....-.+|.|. ..+.+.-|+..+-++..
T Consensus 692 ~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~- 768 (895)
T KOG2076|consen 692 VITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR- 768 (895)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH-
Confidence 8873 11 232 24466556666666655555555544432 223332222233221 12566677776666555
Q ss_pred CCCCCHHHHHHHHH-HH----------HhcCChhhHHHHHHHHhhcCCCC-CHHHHHHHHHHHhhhhHHHHHHHHHHhcC
Q 039931 665 AFVPNVVTTNVLLS-HF----------CKQGMPEKTLLWGQKLSEISFDF-DETSYKIMDRAYHNIQENAEFFQETSEKS 732 (783)
Q Consensus 665 ~~~p~~~~~~~ll~-~~----------~~~g~~~~A~~~~~~~~~~~~~~-d~~~~~~l~~~y~~~~~~~~~~~~~~~~~ 732 (783)
..||....+..+. +| .++-..-.++.++++..++.... --.++.+++++|.. -+=+..|..+++|+
T Consensus 769 -~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~-~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 769 -QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQ-IGLVHLAVSYYEKV 846 (895)
T ss_pred -hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH-cccHHHHHHHHHHH
Confidence 3466444433332 22 22334456777777777765431 23456677999865 46677888888888
Q ss_pred CCcchhh
Q 039931 733 LFLDFLM 739 (783)
Q Consensus 733 ~~~~~~~ 739 (783)
+.++|-+
T Consensus 847 L~~~p~~ 853 (895)
T KOG2076|consen 847 LEVSPKD 853 (895)
T ss_pred hCCCccc
Confidence 8876533
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=3e-14 Score=160.42 Aligned_cols=463 Identities=12% Similarity=0.011 Sum_probs=293.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
+.+--.-+-...+.|+++.|+..|++.++.........+ .++..+...|+.++|+..+++.+... ..+......+...
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~l 111 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARA 111 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHH
Confidence 333333344567899999999999999988632112233 88888899999999999999997221 1334444555678
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVK 263 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 263 (783)
+...|++++|+++++++.+.. +.|...+..++..+...++.++| .+.++.+... .|+...+-.++..+..
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eA-------l~~l~~l~~~--dp~~~~~l~layL~~~ 181 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVV-------LKQATELAER--DPTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHH-------HHHHHHhccc--CcchHHHHHHHHHHHh
Confidence 889999999999999999876 45567777888889999999888 4566666554 4565556555455545
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEF 343 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 343 (783)
.++..+|++.++++.+..+. +...+..+..++.+.|-...|.++..+-.. .++-..... =+.+.|.+.
T Consensus 182 ~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~------~f~~~~~~~-----l~~~~~a~~ 249 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPN------LVSAEHYRQ-----LERDAAAEQ 249 (822)
T ss_pred cchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCcc------ccCHHHHHH-----HHHHHHHHH
Confidence 66776799999999998432 667778888899999999998887765332 111111000 001111111
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCH-HH----HHHHHHHHHhcCChhHHHHHHHHH
Q 039931 344 FEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF-GLTPSS-CT----CSSLLVGLCKKGRLPEAWDLLCKM 417 (783)
Q Consensus 344 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-~~----~~~li~~~~~~g~~~~a~~~~~~~ 417 (783)
.+. +..|+.. -. . +.--.+.|+.-++.+... +-.|.. .. ..-.+-++...|+..++++.++.+
T Consensus 250 vr~----a~~~~~~-~~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 250 VRM----AVLPTRS-ET---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred Hhh----ccccccc-ch---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 111 1111000 00 0 001124444444444431 111211 11 112233556667777777777777
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-
Q 039931 418 IEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRK-----IFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIG- 491 (783)
Q Consensus 418 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 491 (783)
...+.+....+-..+.++|...+.+++|+.+++.+.... ..++......|..++...+++++|..+++.+.+..
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 766655555666677777777777777777777765532 12233334667777777777777777777776521
Q ss_pred ------------CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039931 492 ------------FVPNNF-AYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMY 558 (783)
Q Consensus 492 ------------~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 558 (783)
..||-. .+..++..+.-.|++.+|.+.++++....+. |......+.+.+...|.+.+|.+.++...
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 112222 3344566677788888888888888776554 77777788888888888888888886665
Q ss_pred HcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 559 RTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNI 606 (783)
Q Consensus 559 ~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 606 (783)
.. .| +..+....+.++...+++++|..+.+.+.+ ..|+....-.
T Consensus 478 ~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~ 522 (822)
T PRK14574 478 SL--APRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQE 522 (822)
T ss_pred hh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHH
Confidence 53 45 456666777777778888888888877776 3565444333
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=5.8e-13 Score=136.66 Aligned_cols=560 Identities=11% Similarity=0.051 Sum_probs=371.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 039931 118 EMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLL 197 (783)
Q Consensus 118 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 197 (783)
++..+|..++...++.+ +.++..|..-.+.=-..|++..|..+..+-.+.-+ .+...|--- ++....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cp-rSeDvWLea----iRLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECP-RSEDVWLEA----IRLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCC-chHHHHHHH----HhcCChHHHHHHH
Confidence 45667777888877776 34445555544444455666666555544433322 233333221 1233334444444
Q ss_pred HHHHhCC------------------------------CCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCC
Q 039931 198 HVMHKYM------------------------------CVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGL 247 (783)
Q Consensus 198 ~~m~~~g------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~ 247 (783)
....+.- ++.++..|-..+. ....+.| +-++.+..+. +
T Consensus 339 A~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVe----lE~~~da-------rilL~rAvec-c 406 (913)
T KOG0495|consen 339 ANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVE----LEEPEDA-------RILLERAVEC-C 406 (913)
T ss_pred HHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHh----ccChHHH-------HHHHHHHHHh-c
Confidence 4433321 1222222322221 1222222 4455544442 1
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHH----hCCCCCcHHH
Q 039931 248 SPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLS----VSGLLPNCTL 323 (783)
Q Consensus 248 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~ 323 (783)
+.+...| -+|.+..-++.|..+++...+. ++.+...|.+-...--..|+.+....++++-+ ..|+..+...
T Consensus 407 p~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdq 481 (913)
T KOG0495|consen 407 PQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQ 481 (913)
T ss_pred cchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHH
Confidence 2233333 3455666678888888888775 66677788777777777888888877776543 4577777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 324 YDITVAGLCWAGRLDEAMEFFEDMFEKGISP--SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGL 401 (783)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 401 (783)
|-.=...+-..|..-.+..+....+..|++- -..||+.-.+.|.+.+.++-|..+|...++.- +-+...|......-
T Consensus 482 Wl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~e 560 (913)
T KOG0495|consen 482 WLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHH
Confidence 7766677777788888888888888777652 24578888888888888888888888888752 33556677666666
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 039931 402 CKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 481 (783)
-..|..++-..++++....- +-....|-.....+...|+...|..++....+..+. +...|-+-+.....+.+++.|.
T Consensus 561 k~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHH
Confidence 67788888888888888873 336667777777888888888888888888877554 6677888888888888888998
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039931 482 GVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPD-NFTFNIIINGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 482 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
.+|.+.... .|+...|.--+..-.-.+..++|++++++.++. -|+ ...|-.+...+-+.++++.|.+.|..-.+.
T Consensus 639 ~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 639 DLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 888888764 467777766666666678888888888888776 333 456777778888888888888888776664
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 039931 561 GLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYN 640 (783)
Q Consensus 561 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 640 (783)
++.....|..|...=-+.|.+-+|..++++..-++ +-|...|...|..-.+.|+.+.|..++.+.++. ..-+...|.
T Consensus 715 -cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWa 791 (913)
T KOG0495|consen 715 -CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWA 791 (913)
T ss_pred -CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHH
Confidence 33345667777777778888888888888887654 346788888888888899999888888877753 222335566
Q ss_pred HHHHHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 039931 641 TLMNGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYH 716 (783)
Q Consensus 641 ~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~ 716 (783)
.-|...-. ++-.++...+++ ..-|+.....+...|.....+++|.+|++++++++|+ ...+|..+...+.
T Consensus 792 EaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel 862 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFEL 862 (913)
T ss_pred HHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHH
Confidence 65544332 232333333333 3445556666667777788889999999999888877 5666755555443
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=3e-14 Score=138.89 Aligned_cols=325 Identities=17% Similarity=0.239 Sum_probs=152.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHhcCCCCCHHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYG---SVWKLFRDMIHLGPRPSNYTFN 178 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~ 178 (783)
..+.+=|.|++. ...|.+.++.-+++.|...|++.+...--.|++.-+-.+.-+ .-|+.|-.|...|- .+..+|
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW- 190 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW- 190 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc-
Confidence 334566777765 446788899999999999998888777666666544333222 22344444444432 222233
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
+.|.+.+ ++.+.. +.+..+|.++|.++||.-..+.| +.++.+-.....+.+..+||.+|
T Consensus 191 -------K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA-------~~L~kE~~~~k~kv~~~aFN~lI 249 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERA-------RELYKEHRAAKGKVYREAFNGLI 249 (625)
T ss_pred -------ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHH-------HHHHHHHHHhhheeeHHhhhhhh
Confidence 2333222 222221 33445555555555555444444 44555544444444555555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHH----HHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDG----DRLLRDLSVSGLLPNCTLYDITVAGLCWA 334 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (783)
.+-.-. ...++..+|....+.||..|+|+++++..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.
T Consensus 250 ~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 250 GASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 433211 1145555555555555555555555555555554432 33444444445555555554444444444
Q ss_pred CCHH-HHHHHHHHHHHC----CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHH
Q 039931 335 GRLD-EAMEFFEDMFEK----GISP----SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFG----LTPS---SCTCSSLL 398 (783)
Q Consensus 335 g~~~-~A~~~~~~m~~~----g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~---~~~~~~li 398 (783)
++.. .|..++.++.+. .+.| |...|...++.|.+..+.+-|.++..-+.... +.|+ ..-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 4432 223333332221 1111 22233334444444444444444333322110 1111 12233444
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 399 VGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
...|+....+.....|+.|+-.-+-|+..+...++.+..-.|.++-.-++|..+..
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE 461 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 44444444444444444444443444444444444444444444444444444443
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=7.1e-14 Score=157.48 Aligned_cols=449 Identities=10% Similarity=0.038 Sum_probs=269.3
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 039931 149 LLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYA 228 (783)
Q Consensus 149 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 228 (783)
..+.|+++.|+..|.+.++..|.-....+ .++..+...|+.++|+..+++..... +........+...|...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 45677777777777777765543222223 55666666677777777766665110 11122222223455555666655
Q ss_pred hhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHH
Q 039931 229 LGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRL 308 (783)
Q Consensus 229 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 308 (783)
.++++++.+.... |...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.
T Consensus 122 -------iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 122 -------LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred -------HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 3455555544332 3444555555556666666666666665544 33333332222222223333334555
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 039931 309 LRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLT 388 (783)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 388 (783)
++++.+..+ .+...+..+...+.+.|-...|.++..+-. +.++-...... +.+.|.+. ++.+..
T Consensus 192 ~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~----vr~a~~ 255 (822)
T PRK14574 192 SSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQ----VRMAVL 255 (822)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHH----Hhhccc
Confidence 555444421 133333444444444444444443333211 11110000000 00111111 111111
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C-CCCCHhh----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 039931 389 PSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEK-G-FPINKVA----FTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAV 462 (783)
Q Consensus 389 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 462 (783)
++..- -.+.--.+.|+.-++.+... + .++.... ..-.+-++...|+..++++.|+.+...+......
T Consensus 256 ~~~~~-------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 256 PTRSE-------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred ccccc-------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 11000 00111245667777776653 1 1222122 2234557788999999999999999988654566
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIG-----FVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGL---------- 527 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~---------- 527 (783)
+-..+.++|...+++++|..++..+.... .+++......|..++...+++++|..+++.+.+..+
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 78889999999999999999999987643 233444567899999999999999999999987422
Q ss_pred ---CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 039931 528 ---LPDN-FTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DIT 602 (783)
Q Consensus 528 ---~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 602 (783)
.||- ..+..++..+...|++.+|.+.++++.... +-|......+.+.+...|.+.+|++.++.... +.| +..
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~ 485 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLI 485 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHH
Confidence 2232 234455777889999999999999998763 44889999999999999999999999977765 456 457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTV 637 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 637 (783)
+....+.++...|++++|..+.+.+.+. .|+..
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 7788889999999999999999998863 44443
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.4e-13 Score=134.33 Aligned_cols=324 Identities=13% Similarity=0.183 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--Chhh-HHHHHHHHHhCCCCCCHHhHHHH
Q 039931 139 ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG--CIRI-GESLLHVMHKYMCVADFFAYNIL 215 (783)
Q Consensus 139 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~-A~~~~~~m~~~g~~~~~~~~~~l 215 (783)
+.+=|.|+. +..+|...++.-+|+.|...|...+...--.|++.-|--+ ++-- -.+.|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 344455554 3456677777777777777766655555444444333221 1111 122333333333 2222232
Q ss_pred HHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 039931 216 INAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSG 295 (783)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 295 (783)
|.|.+. .-+|+..++ +..+|..+|.++|+.-..+.|.++|++......+.+..+||.+|.+
T Consensus 191 -----K~G~vA---------dL~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~ 251 (625)
T KOG4422|consen 191 -----KSGAVA---------DLLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGA 251 (625)
T ss_pred -----ccccHH---------HHHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhH
Confidence 222221 223333332 5667777777777777777777777777766666677777777764
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 039931 296 HCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDE----AMEFFEDMFEKGISPSIFAFNSIIAAYSRAGL 371 (783)
Q Consensus 296 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 371 (783)
-.- ....+++.+|......||..++|+++.+..+.|+++. |.+++.+|++.|++|...+|..+|..+++.++
T Consensus 252 ~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 252 SSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESD 327 (625)
T ss_pred HHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCC
Confidence 322 2225666666666666666666666666666665543 34455566666666666666666666666655
Q ss_pred HHH-HHHHHHHHHh----CCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCC---HhhHHHHHHH
Q 039931 372 EEN-AFEAYKIMHQ----FGLTP----SSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKG----FPIN---KVAFTVLLDG 435 (783)
Q Consensus 372 ~~~-A~~~~~~m~~----~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~ 435 (783)
..+ |..++.++.. ..++| |..-|...+..|.+..+.+-|.++..-+.... +.|+ ...|..+...
T Consensus 328 p~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~l 407 (625)
T KOG4422|consen 328 PQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDL 407 (625)
T ss_pred chhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHH
Confidence 533 3333333322 11111 22233444455555555555555544333210 1111 1223344444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 039931 436 YFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRI 490 (783)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 490 (783)
.|+....+.-...|+.|.-+-..|+..+...++++..-.|+++-.-+++.++...
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 4444445555555555544444444444444444444444444444444444443
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=8.2e-15 Score=143.42 Aligned_cols=454 Identities=16% Similarity=0.082 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHH-HHHHHHHccCChhHHHHHHHHHHhCCCCCc----HHHHHH
Q 039931 252 VVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFN-IIVSGHCKYGGMEDGDRLLRDLSVSGLLPN----CTLYDI 326 (783)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 326 (783)
.+...|..-|..+....+|+..|+-+.+...-|+.-... .+.+.+.+...+.+|.+.++..+..-+..+ ..+.+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 344456677888888999999999999888878765543 345678888999999999998887643333 334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------------CHHHH
Q 039931 327 TVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTP------------SSCTC 394 (783)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p------------~~~~~ 394 (783)
+...+.+.|+++.|+..|+...+. .||..+-..|+-.+.--|+.++..+.|.+|+.....| +....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 555688999999999999998875 5787776667777777899999999999997653332 33333
Q ss_pred HHHHH-----HHHhcC--ChhHHHHHHHHHHHcCCCCCHh-------------hHH--------HHHHHHHhcCCHHHHH
Q 039931 395 SSLLV-----GLCKKG--RLPEAWDLLCKMIEKGFPINKV-------------AFT--------VLLDGYFRIGDLIGAQ 446 (783)
Q Consensus 395 ~~li~-----~~~~~g--~~~~a~~~~~~~~~~~~~~~~~-------------~~~--------~li~~~~~~g~~~~A~ 446 (783)
+..+. -..+.+ +-++++-.-.+++.--+.|+-. .+. .-..-+.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 32222 122211 1222222222222222222211 000 1123467899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH--HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 447 SLWNELNRRKIFPDAVAFSAYINGL--SKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQ 524 (783)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 524 (783)
++++-..+..-..-...-+.|-..+ ..-.++..|.+.-+...... .-|......-.+.....|++++|.+.+++...
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 9999888764332222233332222 22345666766666555431 12222222222233457999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 525 KGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTY 604 (783)
Q Consensus 525 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 604 (783)
.........||. .-.+-..|++++|++.|-++... +..+......+.+.|....+...|++++.+.... ++.|+.+.
T Consensus 519 ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 754433444443 33567899999999999887653 3456777888889999999999999999888762 34478889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-H
Q 039931 605 NIRMHGYCNIRKMNQAAMMLDELVSAGIVP-NTVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHF-C 681 (783)
Q Consensus 605 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~ 681 (783)
.-|.+.|-+.|+-.+|++.+-+--+ ..| +..|...|...|.. ...++|+.+|++.-- +.|+.+-|-.++..| .
T Consensus 596 skl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHH
Confidence 9999999999999999998766433 334 44555555544444 467899999999877 789999999988766 5
Q ss_pred hcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 039931 682 KQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYH 716 (783)
Q Consensus 682 ~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~ 716 (783)
+.|++.+|+..++.....-|+ |...+..|.++..
T Consensus 672 rsgnyqka~d~yk~~hrkfpe-dldclkflvri~~ 705 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAG 705 (840)
T ss_pred hcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhc
Confidence 689999999999999988887 8888888887654
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=6.9e-11 Score=121.70 Aligned_cols=518 Identities=10% Similarity=-0.019 Sum_probs=402.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHH
Q 039931 158 VWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRM 237 (783)
Q Consensus 158 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~ 237 (783)
=.+++.+.++. ++.++..|-.. ......+.|.-++.+..+. |+.+...|. +|++...++.| ++
T Consensus 365 K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenA-------kk 427 (913)
T KOG0495|consen 365 KKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENA-------KK 427 (913)
T ss_pred HHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHH-------HH
Confidence 34566677665 32455555443 3455667788888888765 344444444 44454455555 67
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHH
Q 039931 238 IFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEM----RSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLS 313 (783)
Q Consensus 238 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 313 (783)
++....+. ++.+...|.+-...--.+|+.+...++.++- ...|+..+...|..=...|-..|..-.+..+....+
T Consensus 428 vLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avi 506 (913)
T KOG0495|consen 428 VLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVI 506 (913)
T ss_pred HHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHH
Confidence 77777653 4557888888888888889999888887764 446888888888888888888899999999999888
Q ss_pred hCCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 039931 314 VSGLLP--NCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSS 391 (783)
Q Consensus 314 ~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 391 (783)
..|+.. -..+|..-...|.+.+.++-|..+|...++--+ .+...|...+..--..|..++...+|++.... ++-..
T Consensus 507 gigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae 584 (913)
T KOG0495|consen 507 GIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAE 584 (913)
T ss_pred hhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcch
Confidence 887753 345788888889999999999999999988633 36778888888777889999999999999886 33355
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 392 CTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGL 471 (783)
Q Consensus 392 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 471 (783)
..|......+-..|++..|..++....+.... +...|-+-+........++.|..+|.+.... .|+...|..-+...
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLE 661 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHH
Confidence 66777777888899999999999999998555 8889999999999999999999999988775 45777777777777
Q ss_pred HccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 039931 472 SKAGLVDEAYGVFLEMSRIGFVPN-NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPA 550 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 550 (783)
--.+..++|.+++++..+. -|+ ...|..+.+.+-+.++++.|...|..-.+. ++-.+-.|-.|...--+.|++-.|
T Consensus 662 r~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhH
Confidence 7789999999999999885 344 456778888889999999999988876665 333556777777778889999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 551 IDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 551 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
..+++...-.+ +-|...|...|..-.+.|+.+.|..+..+.++. ++.+...|..-|...-+.++-..+.+.+++..
T Consensus 739 R~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce-- 814 (913)
T KOG0495|consen 739 RSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-- 814 (913)
T ss_pred HHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc--
Confidence 99999988764 457889999999999999999999999998874 44566788888888888888777776666532
Q ss_pred CCCCCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHH
Q 039931 631 GIVPNTVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSY 708 (783)
Q Consensus 631 g~~p~~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 708 (783)
-|....-++-..+.. .++++|.+.|.+.++ +.||. .+|..+...+..+|.-+.-.+++.+.....|. ....|
T Consensus 815 ---~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~-hG~~W 888 (913)
T KOG0495|consen 815 ---HDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT-HGELW 888 (913)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-CCcHH
Confidence 243333333333433 689999999999998 45766 78888888899999999999999999998886 34445
Q ss_pred HHH
Q 039931 709 KIM 711 (783)
Q Consensus 709 ~~l 711 (783)
...
T Consensus 889 ~av 891 (913)
T KOG0495|consen 889 QAV 891 (913)
T ss_pred HHH
Confidence 433
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=9.9e-14 Score=135.93 Aligned_cols=480 Identities=16% Similarity=0.082 Sum_probs=236.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHH
Q 039931 178 NALILGFCRNGCIRIGESLLHVMHKYMCVADFFAY-NILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNA 256 (783)
Q Consensus 178 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 256 (783)
..|..-|..+....+|+..++-+.+...-||.-.. ..+.+.+.+..++.+|+.++ +..+++.+.-.-.--+...+.
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfy---rmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFY---RMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHH---HHHHhhccccchhhHHHHHhh
Confidence 33455566777888899999988887666665433 23455677777888886544 223333332111111234455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc------------HHHH
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPN------------CTLY 324 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~ 324 (783)
+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|......+| ....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 555678899999999999988775 57887766666667778999999999999876533332 2222
Q ss_pred HHHHH-----HHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 039931 325 DITVA-----GLCWAG--RLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSL 397 (783)
Q Consensus 325 ~~li~-----~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 397 (783)
+.-|. -.-+.. +.++++-.--+++.--+.|+... +| +=.++.++.-.-..+..+. -..-
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g~------dwcle~lk~s~~~~la~dl--ei~k 425 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------GC------DWCLESLKASQHAELAIDL--EINK 425 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------cc------HHHHHHHHHhhhhhhhhhh--hhhH
Confidence 22111 111111 11222222222222112222110 00 0001111100000000000 0001
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR--IGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAG 475 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 475 (783)
...+.+.|+++.|+++++-..+..-..-...-+.|-..+.- -.++..|...-+......-- +......-.+.-..+|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecC
Confidence 12345556666666665555544322222222222222222 22444555544444332111 2222222222334456
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 039931 476 LVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFM 555 (783)
Q Consensus 476 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 555 (783)
++++|.+.+++.....-.-....||. .-.+-..|++++|+..|-++..- +..+....-.+.+.|-...+...|++++.
T Consensus 505 d~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 66666666666554321111122222 22344556666666655544322 11244455555556666666666666665
Q ss_pred HHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039931 556 DMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN 635 (783)
Q Consensus 556 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 635 (783)
+.... ++.|+....-|...|-+.|+-..|.+.+-+--+ -++-|..+...|..-|....-+++|+.+|++..- ++|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 54432 233455566666666666666666655443332 1233556666666666666666666666665432 4566
Q ss_pred HHHHHHHHHHHhh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 039931 636 TVTYNTLMNGVCC--DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQG 684 (783)
Q Consensus 636 ~~~~~~li~~~~~--~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 684 (783)
..-|..||..|.+ |.+.+|.++++....+ ++.|......|++.+...|
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 6666666655553 5666666666655442 3445555555555554444
No 35
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.68 E-value=5.7e-10 Score=114.98 Aligned_cols=573 Identities=11% Similarity=0.066 Sum_probs=321.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREV-GIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALIL 182 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 182 (783)
+.+|-.-+....++|+...-...|++.+.. -+.-....|...+...-..|-.+.++.+|++.++..|+ .-+--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~----~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPE----AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHH----HHHHHHH
Confidence 367777788888888888888888876654 22334456888888887888888888888888775432 2455667
Q ss_pred HHHhcCChhhHHHHHHHHHhCC------CCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCCh--HHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKYM------CVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNV--VVY 254 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~--~~~ 254 (783)
-+++.++.++|.+.+...+... -+.+...|..+-+..++.-+.-..+. ...++..+.. .-+|. ..|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln----vdaiiR~gi~--rftDq~g~Lw 251 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN----VDAIIRGGIR--RFTDQLGFLW 251 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC----HHHHHHhhcc--cCcHHHHHHH
Confidence 7788888888888887765321 13445566666666665543322211 0122222221 12343 579
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 039931 255 NALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWA 334 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (783)
++|.+.|.+.|.+++|.++|++.... ...+.-|..+.++|.+-....-+..+= ...+.+..+. ..
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~ 316 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DD 316 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hh
Confidence 99999999999999999999998765 224555667777665532221111111 0000111110 11
Q ss_pred CCHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HHHHHHH
Q 039931 335 GRLDEAMEFFEDMFEKGI-----------SPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS------SCTCSSL 397 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l 397 (783)
-+++-....|+.+.+.++ +-++..|..-.. +..|+..+-...|.+..+. +.|. ...|..+
T Consensus 317 ~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 317 VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHH
Confidence 223444445555554321 113444443332 2345555666666665543 2221 1235556
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPIN---KVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKA 474 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 474 (783)
.+.|-..|+++.|..+|++..+..++.- ..+|..-..+-.+..+++.|+++.+..... |.... ..+...
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~ 465 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDN 465 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcC
Confidence 6666666666666666666655533311 123333333444455555555554444332 21111 112222
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 039931 475 GLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAF 554 (783)
Q Consensus 475 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 554 (783)
+..-.+ . +..+...|...++.--..|-++....+++++.+..+. ++...-.....+-...-++++.+++
T Consensus 466 ~~pvQ~-----r-----lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 466 SEPVQA-----R-----LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCcHHH-----H-----HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 221111 0 0113345666666666778888888899998887665 4444333344455666788888888
Q ss_pred HHHHHcCCCCCh-hHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Q 039931 555 MDMYRTGLVPDI-VTYNTLIGGYCK---ALDIVRADELVNKMYAGGLDPDITTYNIRM--HGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 555 ~~m~~~g~~p~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~ 628 (783)
++-+..--.|++ ..|+..+.-+.+ ..+++.|..+|++.++ |++|...-+..|+ ..=-..|....|+.++++..
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 876654334553 467666655543 3468899999999998 7777543332222 33345588888999999865
Q ss_pred HCCCCCCH--HHHHHHHHHHhh--ccHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHhcCChhhHHHHHHHHhhc-C
Q 039931 629 SAGIVPNT--VTYNTLMNGVCC--DILDRAIIIAAKLLKMAFVPNVVTTNVL---LSHFCKQGMPEKTLLWGQKLSEI-S 700 (783)
Q Consensus 629 ~~g~~p~~--~~~~~li~~~~~--~~~~~A~~~~~~~~~~~~~p~~~~~~~l---l~~~~~~g~~~~A~~~~~~~~~~-~ 700 (783)
. ++.+.. ..||..|.-... | ......+++++++ .-||...-... ...=++.|..+.|..++.-..++ +
T Consensus 614 ~-~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 614 S-AVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred h-cCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 4 455554 468887764321 1 1233445555555 34555432222 22347889999999888777764 4
Q ss_pred CCCCHHHHHHHHHHHhhhhHHHHHHHHHH
Q 039931 701 FDFDETSYKIMDRAYHNIQENAEFFQETS 729 (783)
Q Consensus 701 ~~~d~~~~~~l~~~y~~~~~~~~~~~~~~ 729 (783)
|.-+..-|+.--.- --.+++.+..++|+
T Consensus 690 Pr~~~~fW~twk~F-EvrHGnedT~keML 717 (835)
T KOG2047|consen 690 PRVTTEFWDTWKEF-EVRHGNEDTYKEML 717 (835)
T ss_pred CcCChHHHHHHHHH-HHhcCCHHHHHHHH
Confidence 44334334332211 11146677777776
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.3e-10 Score=115.30 Aligned_cols=445 Identities=10% Similarity=0.022 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-HhHHHHHH
Q 039931 139 ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADF-FAYNILIN 217 (783)
Q Consensus 139 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~ 217 (783)
...|--...-=..++++..|..+|++++.... .+...|---+.+-.++..+..|..++++....- |-+ ..|-..+.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHH
Confidence 33444444444445566666666766665542 455556666666666666667777776666542 222 23333444
Q ss_pred HHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 039931 218 AYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHC 297 (783)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 297 (783)
+=-..|++..| +++|+.-.+ ..|+..+|++.|+.-.+.+.++.|..+|++.+- +.|++.+|--..+.=.
T Consensus 150 mEE~LgNi~ga-------RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~ 218 (677)
T KOG1915|consen 150 MEEMLGNIAGA-------RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEE 218 (677)
T ss_pred HHHHhcccHHH-------HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHH
Confidence 44455666666 677777655 357777777777777777777788888777765 3577777777777777
Q ss_pred ccCChhHHHHHHHHHHhC-CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 039931 298 KYGGMEDGDRLLRDLSVS-GL-LPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPS-IFAFNSIIAAYSRAGLEEN 374 (783)
Q Consensus 298 ~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 374 (783)
++|+...+..+++.+.+. |- ..+...+++....-.++..++.|.-+|.-.++.=+... ...|.....---+-|+...
T Consensus 219 k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 219 KHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred hcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh
Confidence 777777777777776543 11 11223344444444455566666666666655411110 2222222222222333222
Q ss_pred HHH--------HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHH
Q 039931 375 AFE--------AYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINK-VAFTVLLDGYFRIGDLIGA 445 (783)
Q Consensus 375 A~~--------~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A 445 (783)
..+ -|+.+...+ +-|-.+|--.++.-...|+.+...+++++.+..-++.+. ..|...|-...
T Consensus 299 IEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi-------- 369 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI-------- 369 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH--------
Confidence 111 122333332 234445555555555556666666666665554222111 11111111100
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHH
Q 039931 446 QSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFC----NRGKLNEALKLERE 521 (783)
Q Consensus 446 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~l~~~ 521 (783)
|..+-.-....+++.+.++++..++. ++...+||.-+--.|+ ++.++..|.+++..
T Consensus 370 -------------------nYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 370 -------------------NYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred -------------------HHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 00011112234444444444444442 2333334333222222 34444555554444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC
Q 039931 522 MRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGG-LDPD 600 (783)
Q Consensus 522 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 600 (783)
.+. ..|...+|...|..-.+.++++.+..++++.++-+ +-|..+|.-....=...|+.+.|..+|+-.++.. +...
T Consensus 430 AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 430 AIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred Hhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 432 23444444444554445555555555555555432 1134444444444444455555555555544421 0111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 601 ITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 601 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
...|-+.|+-=...|.++.|..+++++++
T Consensus 507 ellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 507 ELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 23344444444445555555555555543
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4e-10 Score=111.95 Aligned_cols=447 Identities=12% Similarity=0.071 Sum_probs=319.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
.+|-.-.+-=-..+.+..|..+|++++..+ ..+...|-..+..=.++.....|..++++.+..=|..|.. |.--+.+-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymE 151 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHH
Confidence 344444444445677889999999999877 5677788888998899999999999999998876555554 44455566
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 039931 185 CRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKA 264 (783)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 264 (783)
-..|++..|.++|++-... .|+...|++.|+.=.+....+.| +.+++...- +.|++.+|-.....-.+.
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeiera-------R~IYerfV~--~HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERA-------RSIYERFVL--VHPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHH-------HHHHHHHhe--ecccHHHHHHHHHHHHhc
Confidence 6789999999999988764 79999999999999998888888 788888765 359999999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHh----HHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCC---
Q 039931 265 RDIDQANMLYEEMRSRDIAPDAV----TFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLP-NCTLYDITVAGLCWAGR--- 336 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~--- 336 (783)
|....|..+|+...+. + -|.. .+.+....=.++..++.|.-+|.-.+..=+.. ....|..+...--+-|+
T Consensus 221 g~~~~aR~VyerAie~-~-~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 221 GNVALARSVYERAIEF-L-GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred CcHHHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh
Confidence 9999999999998764 1 1222 33444444445677888888888877653221 23445555444444455
Q ss_pred HHHHHH-----HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHH----HHHH----
Q 039931 337 LDEAME-----FFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSC--TCSSL----LVGL---- 401 (783)
Q Consensus 337 ~~~A~~-----~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l----i~~~---- 401 (783)
++.++- -++.+++.++- |-.+|-..++.--..|+.+...++|+..+.. ++|-.. .|..- |+.+
T Consensus 299 IEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeE 376 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEE 376 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 344432 34555555443 8888988898888899999999999999876 454221 12211 1111
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 039931 402 CKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDG----YFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 477 (783)
....+.+.+.++++..++. +|....|+.-+--+ -.++.++..|.+++...... -|-.-+|...|..-.+.+++
T Consensus 377 le~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREF 453 (677)
T ss_pred HHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhH
Confidence 2467888888899888884 55555555544333 34677888888888776643 56677788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039931 478 DEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKG-LLPDNFTFNIIINGFCKQGRMKPAIDAFMD 556 (783)
Q Consensus 478 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 556 (783)
|....++++.++-+ +-|..+|......-...|+.+.|..+|.-.++.. .......|.+.|+.-...|.++.|..++++
T Consensus 454 DRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 454 DRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence 88888888888764 4456677766666667888888888888877652 222345677777777788888888888888
Q ss_pred HHHcCCCCChhHHHHHHH
Q 039931 557 MYRTGLVPDIVTYNTLIG 574 (783)
Q Consensus 557 m~~~g~~p~~~~~~~li~ 574 (783)
+++. .+...+|.+...
T Consensus 533 lL~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 533 LLDR--TQHVKVWISFAK 548 (677)
T ss_pred HHHh--cccchHHHhHHH
Confidence 8875 345556655544
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.62 E-value=1.5e-11 Score=130.90 Aligned_cols=287 Identities=14% Similarity=0.042 Sum_probs=154.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHh
Q 039931 466 AYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK--GLLPDNFTFNIIINGFCK 543 (783)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~ 543 (783)
.++..++..-+..+++..-+.....-+ + -.|..||+-++...+.+.|..+.++.... .+..|..-+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 344444444444444433333322111 1 35778888888888888888888887644 233455667788888888
Q ss_pred cCChHHHHHHHHHHHHcCC-CCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039931 544 QGRMKPAIDAFMDMYRTGL-VPD-IVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAA 621 (783)
Q Consensus 544 ~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 621 (783)
.+....+..++.++.+.-. .|+ ..+.-.+++.-...|+.+...++++-+...|+.-+ .-++....+.++...|.
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ 616 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQ 616 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhh
Confidence 8888888888888875311 222 34555666667778888888888887777665432 23334445556666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhh---ccHHHHHHHH------HH---------HHH-cC---------------CC
Q 039931 622 MMLDELVSAGIVPNTVTYNTLMNGVCC---DILDRAIIIA------AK---------LLK-MA---------------FV 667 (783)
Q Consensus 622 ~~~~~m~~~g~~p~~~~~~~li~~~~~---~~~~~A~~~~------~~---------~~~-~~---------------~~ 667 (783)
++++.-... .+|.......+.+.+.+ +..+++..+- .+ +++ .| +.
T Consensus 617 ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~ 695 (1088)
T KOG4318|consen 617 EAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIV 695 (1088)
T ss_pred hcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccc
Confidence 665544321 12222111111111111 1122221111 00 000 00 01
Q ss_pred C---------CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhh--hHHHHHHHHHHhcCCCcc
Q 039931 668 P---------NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNI--QENAEFFQETSEKSLFLD 736 (783)
Q Consensus 668 p---------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~--~~~~~~~~~~~~~~~~~~ 736 (783)
| +.....-|+..|.+.|+++.|...+.++. ..|.+.+...|+.++... ..++-.+....+|+-+..
T Consensus 696 ~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~ 772 (1088)
T KOG4318|consen 696 PLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELR 772 (1088)
T ss_pred cHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcc
Confidence 1 00112346778999999999999998886 335677888888887543 233344444444444433
Q ss_pred hhhhHHHHhhhh--hhhhhhhhhhHHHhh
Q 039931 737 FLMGCMTLNVTG--DFCVQSMKLQTAAIG 763 (783)
Q Consensus 737 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 763 (783)
+....+.....| .+..|.-+.+-|+.+
T Consensus 773 ~~f~ttt~~~~~~a~~a~q~~qkkaAkk~ 801 (1088)
T KOG4318|consen 773 TLFPTTTCYYEGYAFFATQTEQKKAAKKC 801 (1088)
T ss_pred cccccchHhhhhhHHHHhhHHHHHHHHHH
Confidence 322222222223 444555555555555
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=4.4e-11 Score=127.01 Aligned_cols=283 Identities=10% Similarity=0.033 Sum_probs=192.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCS--SLLVGLCKKGRLPEAW 411 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~ 411 (783)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777777776655532111 222333344447778888888888887764 34443222 3356677788888888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCChHHHHHHH
Q 039931 412 DLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDA-------VAFSAYINGLSKAGLVDEAYGVF 484 (783)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~ 484 (783)
..++++.+..+. ++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888777544 6777778888888888888888888888776554222 12233333333444455556666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 039931 485 LEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP 564 (783)
Q Consensus 485 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 564 (783)
+.+.+. .+.++.....+...+...|+.++|.+++++..+. .|++... ++.+....++.+++++..+...+. .|
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P 325 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HG 325 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CC
Confidence 655443 2456677777888888888888888888888775 3344221 233444568888888888888775 34
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 565 -DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 565 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
|...+.++...|.+.+++++|.+.|+.+.+ ..|+..+|..+...+.+.|+.++|.+++++-+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556677888888888888888888888887 468888888888888888888888888887653
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=9e-11 Score=125.05 Aligned_cols=264 Identities=16% Similarity=0.099 Sum_probs=140.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 039931 99 LFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFN 178 (783)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 178 (783)
+..||.++|..||.-||..|+.+.|- +|.-|.-...+.+...++.++.+...+|+.+.+. .|.+.||.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 34566678888888888888887777 7777777766677777788777777777766654 46677788
Q ss_pred HHHHHHHhcCChhhHHHHHHH-HHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHH-HCCCCCChHHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHV-MHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQ-EEGLSPNVVVYNA 256 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~-m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~-~~g~~p~~~~~~~ 256 (783)
.|..+|...|++.. ++..++ |. .++..+...|--..- ..++..+. ..+.-||.. +
T Consensus 88 ~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e-------~~fl~k~~c~p~~lpda~---n 144 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPE-------RWFLMKIHCCPHSLPDAE---N 144 (1088)
T ss_pred HHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHH-------HHHHhhcccCcccchhHH---H
Confidence 88888888887655 222222 21 122222233322221 11211111 112223322 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSRD-IAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAG 335 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 335 (783)
.|....-.|-++.+++++..+.... ..|-.+ +++-+.... ...+++........-.|+..+|..+++.-..+|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 2333334444555555554442210 111111 122222211 112222222222111466666666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 039931 336 RLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGR 406 (783)
Q Consensus 336 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 406 (783)
+++.|..++.+|.+.|++-+..-|-.|+-+ .++..-+..+++-|.+.|+.|+..|+..-+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 666666666666666666555555555444 55566666666666666666666666665555555444
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.8e-09 Score=107.36 Aligned_cols=384 Identities=12% Similarity=-0.006 Sum_probs=246.1
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHH-
Q 039931 246 GLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLY- 324 (783)
Q Consensus 246 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~- 324 (783)
+...|...+-.....+.+.|..+.|.+.|......- +-.-..|..|.... -+.+.+ ...... ...|....
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~----~~l~~~-l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEIL----SILVVG-LPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHH----HHHHhc-CcccchHHH
Confidence 333454444444445566777788888887776541 11223333333221 112211 111111 11111111
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 039931 325 -DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGL--TPSSCTCSSLLVGL 401 (783)
Q Consensus 325 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~ 401 (783)
-.+..++-...+.+++.+-.+.+...|+.-+...-+....+.-...++++|+.+|+++.+... --|..+|+.++-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY-- 307 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY-- 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--
Confidence 123345556667888888888888887775655555555666677888888888888887631 125566766653
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 039931 402 CKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 481 (783)
.+..+-. +..+.+-...--+--+.|...+.+-|+-.++.++|...|++..+.++. ....|+.+..-|....+...|.
T Consensus 308 v~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 308 VKNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 3322211 111211111101123567777888888888888888888888887654 5677888888888888888898
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039931 482 GVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTG 561 (783)
Q Consensus 482 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 561 (783)
+-++..++.. +.|-..|-.|.++|.-.+...-|+-.|++..+..+. |...|.+|..+|.+.++.++|++.|......|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 8888888863 567788888888888888888888888888877544 78888888899988899999999888888765
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039931 562 LVPDIVTYNTLIGGYCKALDIVRADELVNKMYA----GGLDPDI--TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN 635 (783)
Q Consensus 562 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 635 (783)
..+...+..|.+.|-+.++.++|...+++-++ .|...+. ..-..|..-+.+.+++++|..........
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~----- 536 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG----- 536 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-----
Confidence 44667888888888888888888888877665 2333222 22233556667777777776654443321
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 039931 636 TVTYNTLMNGVCCDILDRAIIIAAKLLK 663 (783)
Q Consensus 636 ~~~~~~li~~~~~~~~~~A~~~~~~~~~ 663 (783)
....++|..+++++..
T Consensus 537 ------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 537 ------------ETECEEAKALLREIRK 552 (559)
T ss_pred ------------CchHHHHHHHHHHHHH
Confidence 1245677777776554
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3.5e-11 Score=119.97 Aligned_cols=217 Identities=16% Similarity=0.110 Sum_probs=111.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 039931 404 KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGV 483 (783)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 483 (783)
.|+.-.|...|+..++.... +...|--+..+|....+.++....|+...+.++. ++.+|..-...+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444322 1112444444444455555555555544444332 333333333344444555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039931 484 FLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLV 563 (783)
Q Consensus 484 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 563 (783)
|++.++.. +-+...|..+.-+..+.++++++...|++.+++ ++..+..|+.....+...++++.|.+.|+..++. .
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E 492 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--E 492 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--c
Confidence 55555432 122333444444444555555555555555554 2224455555555555556666666666555542 2
Q ss_pred CC---------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 564 PD---------IVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 564 p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
|+ +..--.++-.- -.+++..|.+++.+..+ +.| ....|..|...-.+.|++++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 11111111111 23778888888888876 455 346688888888888888888888887654
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=5e-11 Score=126.61 Aligned_cols=292 Identities=13% Similarity=0.055 Sum_probs=147.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEF 343 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 343 (783)
.|+++.|.+......+..-. ....|........+.|+.+.|.+.+.++.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 57777777666665443211 12223222334456677777777776666543222222222224456666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 039931 344 FEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFP 423 (783)
Q Consensus 344 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (783)
++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 176 l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------ 229 (398)
T PRK10747 176 VDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ------------------------ 229 (398)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH------------------------
Confidence 6666665443 5556666666666666666666666666665433211 1110000
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 424 INKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503 (783)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 503 (783)
.+|..++.......+.+...++++.+.+.- ..++.....+...+...|+.++|.+++++..+. +||.... ++
T Consensus 230 ---~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l 301 (398)
T PRK10747 230 ---QAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL 301 (398)
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence 011122222222223333444444333221 124445555555555566666666665555552 2333211 12
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIV 583 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 583 (783)
.+....++.+++.+..+...+..+. |+..+..+...+.+.|++++|.+.|+...+. .|+..++..+...+.+.|+.+
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHH
Confidence 2223345556666666555555332 4455555555666666666666666666553 455555555666666666666
Q ss_pred HHHHHHHHHH
Q 039931 584 RADELVNKMY 593 (783)
Q Consensus 584 ~A~~~~~~m~ 593 (783)
+|.+++++..
T Consensus 379 ~A~~~~~~~l 388 (398)
T PRK10747 379 EAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 44
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=4.1e-10 Score=115.23 Aligned_cols=489 Identities=15% Similarity=0.104 Sum_probs=281.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHH--HHHHHH--
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDI--TVAGLC-- 332 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~~-- 332 (783)
=++.+.+.|++++|.+...+++..+ +-|...+..-+-++.+.+.+++|+.+.+.-.. ..+++. +-.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 3566778899999999999999875 33556677777788899999999966554221 112222 345666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVG-LCKKGRLPEAW 411 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~ 411 (783)
+.++.++|...++-.... +..+...-.+.+.+.|++++|+++|+.+.+++.. + +...+.+ +...+..-.+.
T Consensus 91 rlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH
Confidence 789999999999833222 3446677778899999999999999999887543 2 2222211 11111111111
Q ss_pred HHHHHHHHcCCCCCHhhHHH---HHHHHHhcCCHHHHHHHHHHHHhC-------CCCC--CHH-----HHHHHHHHHHcc
Q 039931 412 DLLCKMIEKGFPINKVAFTV---LLDGYFRIGDLIGAQSLWNELNRR-------KIFP--DAV-----AFSAYINGLSKA 474 (783)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~-------~~~p--~~~-----~~~~li~~~~~~ 474 (783)
+ +......| ..+|.. ....+...|++.+|+++++...+. +-.- +.. .--.+...+...
T Consensus 163 -~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 163 -L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred -H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1 11221222 223333 345667889999999999888321 1110 111 112345567789
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCH-H-HHHHHHHHHHHC-----------CCCCCHHHH-HH
Q 039931 475 GLVDEAYGVFLEMSRIGFVPNNFAY----NSLIAGFCNRGKL-N-EALKLEREMRQK-----------GLLPDNFTF-NI 536 (783)
Q Consensus 475 g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~-~-~A~~l~~~m~~~-----------~~~p~~~~~-~~ 536 (783)
|+.++|..++...++.. ++|.... |.|+.. ..-.++ + .++..++..... ... ..... +.
T Consensus 238 Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk-~~i~~N~~ 314 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQK-QAIYRNNA 314 (652)
T ss_pred cchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999999999998875 4454322 222221 111111 1 122222221111 000 11112 22
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 039931 537 IINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYC--KALDIVRADELVNKMYAGGLDPD--ITTYNIRMHGYC 612 (783)
Q Consensus 537 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~ 612 (783)
++..| .+..+.+.++-..... ..|.. .+.+++..+. +.....++.+++....+. .|+ ..+.-..+....
T Consensus 315 lL~l~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 315 LLALF--TNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHH--hhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHH
Confidence 33333 3444555554433322 23433 3444444332 233577788888777663 343 455666678888
Q ss_pred hcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHhh-c-------cHHHHHHHHHHHHHcCCCCCH-HHHHH
Q 039931 613 NIRKMNQAAMMLD--------ELVSAGIVPNTVTYNTLMNGVCC-D-------ILDRAIIIAAKLLKMAFVPNV-VTTNV 675 (783)
Q Consensus 613 ~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~-~-------~~~~A~~~~~~~~~~~~~p~~-~~~~~ 675 (783)
..|+++.|++++. .+.+.+..|..+.+..-+ +.+ + .+++|+..+..-... .+.. .+|.-
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l--~~~~~~~~~a~~vl~~Ai~~~~~~~t~--s~~l~~~~~~ 463 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVAL--YYKIKDNDSASAVLDSAIKWWRKQQTG--SIALLSLMRE 463 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHH--HHhccCCccHHHHHHHHHHHHHHhccc--chHHHhHHHH
Confidence 9999999999999 666666677765543322 222 2 344455444432211 1211 33434
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcchhhhHHH---Hh-hhhhhh
Q 039931 676 LLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLMGCMT---LN-VTGDFC 751 (783)
Q Consensus 676 ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~ 751 (783)
....-.++|+-++|...++++.+.+|+ |..+..-+.-+|+.+ +.+.++.+.++........ .+. ++ ..|+.+
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~--d~eka~~l~k~L~p~~~l~-~vdVd~LE~s~ga~~ 539 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL--DPEKAESLSKKLPPLKGLK-AVDVDALEKSDGAKY 539 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc--CHHHHHHHhhcCCCcccch-hcCchHhhhccCcch
Confidence 444446779999999999999999986 888888888899877 6677777766644333222 221 12 224444
Q ss_pred hhh------hhhhHHHhh----hh-hhhcccCCccccccCCCC
Q 039931 752 VQS------MKLQTAAIG----RR-GRKAAVWPLPVKKVDQPD 783 (783)
Q Consensus 752 ~~~------~~~~~~~~~----~~-~~~~~~w~~~~~~~~~~~ 783 (783)
... ...+..+.+ ++ .++....|++++|.+.||
T Consensus 540 ~~~~k~ta~S~~~~~~~~~~kKKk~rKrkgk~pknyn~~~tPD 582 (652)
T KOG2376|consen 540 SEAYKKTAVSQVEEKKSKELKKKKKRKRKGKLPKNYNPKVTPD 582 (652)
T ss_pred hhhhccccccchhhccchhhhhhcccccccCCcccCCCCCCCC
Confidence 433 111222222 22 455677889999999998
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=4.6e-11 Score=127.64 Aligned_cols=291 Identities=13% Similarity=0.055 Sum_probs=190.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 412 (783)
..|+++.|.+.+.+..+.... ....+-....++.+.|+++.|.+.+.+..+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 467778888777776665322 2333444456677778888888888877654322222233334667777888888888
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-H---HHHHHHccCChHHHHHHHHHHH
Q 039931 413 LLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFS-A---YINGLSKAGLVDEAYGVFLEMS 488 (783)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~---li~~~~~~g~~~~A~~~~~~m~ 488 (783)
.++.+.+..+. ++.+...+...+.+.|++++|.+.+..+.+.+.. +...+. . ...++...+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888877543 6677778888888888888888888888877654 322221 1 1111122233333344555554
Q ss_pred hCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 039931 489 RIG---FVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFT-FNIIINGFCKQGRMKPAIDAFMDMYRTGLVP 564 (783)
Q Consensus 489 ~~~---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 564 (783)
+.. .+.+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++...+. .|
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence 432 113677788888888888999999998888888643322111 111112223457778888888887765 45
Q ss_pred C-h--hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 565 D-I--VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 565 ~-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
+ . ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 4 45668888888999999999999853333357888888888899999999999988888764
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=4.5e-11 Score=127.75 Aligned_cols=290 Identities=13% Similarity=-0.006 Sum_probs=152.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHh-HHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 039931 263 KARDIDQANMLYEEMRSRDIAPDAV-TFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAM 341 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 341 (783)
..|+++.|.+.+.+..+. .|+.. .+-....+..+.|+.+.|.+.+.++.+....+.....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 478888888888877665 34433 334445667777888888888888766543333333444466677788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHH---HhcCChhHHHHHHHHH
Q 039931 342 EFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSS-LLVGL---CKKGRLPEAWDLLCKM 417 (783)
Q Consensus 342 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~---~~~g~~~~a~~~~~~~ 417 (783)
..++.+.+..+. +...+..+...+.+.|++++|.+.+..+.+.++. +...+.. -...+ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 888888877544 6667777788888888888888888888777543 2222211 11111 2222222222333333
Q ss_pred HHcCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 039931 418 IEKGF---PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVA-FSAYINGLSKAGLVDEAYGVFLEMSRIGFV 493 (783)
Q Consensus 418 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (783)
.+... +.++..+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++...+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 33311 12455555555566666666666666666555422211100 0111111122344444554444444331 1
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 494 PNN--FAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 494 p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122 2333444445555555555555553222222344444445555555555555555555443
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.3e-10 Score=115.88 Aligned_cols=217 Identities=14% Similarity=0.100 Sum_probs=109.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 412 (783)
-.|+.-.|..-|+..++....++. .|--+...|.+..+.++....|.+..+.+.. |+.+|..-.....-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 345556666666666654333222 2555555566666666666666666555422 44455444445555555666666
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 039931 413 LLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGF 492 (783)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 492 (783)
-|++.++..+. +...|..+..+..+.++++++...|++..++-+. -+..|+.....+...+++++|.+.|+..++.
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-- 491 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIEL-- 491 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--
Confidence 66665555333 4445555555555556666666666665554222 3455555555566666666666666655542
Q ss_pred CCC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 493 VPN-------NFAY--NSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 493 ~p~-------~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
.|+ ..++ -.++.. .-.+++..|.+++++..+..++ ....|..|...-.+.|++++|+++|++.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 122 1111 111110 0124555555555555554333 3344555555555555555555555544
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.8e-09 Score=104.41 Aligned_cols=162 Identities=11% Similarity=0.038 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLS 472 (783)
Q Consensus 393 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 472 (783)
|+..+.+-|.-.++.++|...|++.++.+.. ....|+.+..-|....+...|.+-++...+-++. |-..|-.|.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHH
Confidence 4444444455555555555555555544322 3344555555555555555555555555444332 4455555555555
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 039931 473 KAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAID 552 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 552 (783)
-.+...-|+-.|++..+.. +.|...|.+|.++|.+.+++++|++-|......|-. +...+..|...|-+.++.++|..
T Consensus 410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHH
Confidence 5555555555555554431 234445555555555555555555555555444322 33445555555555555555555
Q ss_pred HHHHHH
Q 039931 553 AFMDMY 558 (783)
Q Consensus 553 ~~~~m~ 558 (783)
.|.+.+
T Consensus 488 ~yek~v 493 (559)
T KOG1155|consen 488 YYEKYV 493 (559)
T ss_pred HHHHHH
Confidence 554443
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=8.2e-10 Score=112.63 Aligned_cols=504 Identities=13% Similarity=0.043 Sum_probs=306.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
..-+..+++-+....++.-|.-+-+++...+. ++..-.-+...+.-.|+++.|..+...-.- -..|..+......+
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHHH
Confidence 44566677777777778888888888777653 334444567777777888887777655432 23566677777788
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIR-GQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYV 262 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 262 (783)
+.+..++++|..++.+-.. ..+...|- .+. ++.-+- +.+. ++.. ..-....+-.--..|.
T Consensus 92 l~~lk~~~~al~vl~~~~~---~~~~f~yy------~~~~~~~l~~----n~~~----~~~~--~~~essic~lRgk~y~ 152 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHV---ETNPFSYY------EKDAANTLEL----NSAG----EDLM--INLESSICYLRGKVYV 152 (611)
T ss_pred HHHHHHHHHHHHHhcccch---hhcchhhc------chhhhceecc----Cccc----cccc--ccchhceeeeeeehhh
Confidence 8888888888887763311 11111111 111 100000 0000 0000 0000111111123455
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC----CcHHHHHHHHHHHHhcCCHH
Q 039931 263 KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLL----PNCTLYDITVAGLCWAGRLD 338 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~ 338 (783)
...+.++|...|.+.... |...+..+...-.. ..-.+.+.++.+...+.. .+......+.....-...-+
T Consensus 153 al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~ 226 (611)
T KOG1173|consen 153 ALDNREEARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE 226 (611)
T ss_pred hhccHHHHHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc
Confidence 556677888888777665 43344333221111 111111112222111110 11111111111110000000
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 339 EAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMI 418 (783)
Q Consensus 339 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 418 (783)
+....-.+..-.+..-+........+-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.
T Consensus 227 ~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV 305 (611)
T KOG1173|consen 227 ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLV 305 (611)
T ss_pred cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 011111101111233356666667777888899999999999888864 4566666666778888888887777777887
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH
Q 039931 419 EKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFA 498 (783)
Q Consensus 419 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 498 (783)
+. .|..+.+|-++...|...|+..+|++.|.+....+.. =...|-.+...|+-.|..+.|+..+....+.- +-....
T Consensus 306 ~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP 382 (611)
T KOG1173|consen 306 DL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLP 382 (611)
T ss_pred Hh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcch
Confidence 77 4557888999998888889999999999887665332 24578888888999999999998888776541 111112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC----ChhHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT--GLVP----DIVTYNTL 572 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~l 572 (783)
+--+.--|.+.++.+.|.+.|.+.....+. |+...+-+.-.....+.+.+|...|+..+.. .+.+ -..+++.|
T Consensus 383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL 461 (611)
T KOG1173|consen 383 SLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL 461 (611)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence 222344577788899999999888876443 7888888877777788899999988877632 0111 23457888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 573 IGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMN 644 (783)
Q Consensus 573 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 644 (783)
..+|.+.+.+++|+..+++.+... +-|..++.++.-.|...|+++.|++.|.+.+- +.|+..+...++.
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 888888999999999998888732 34778888888888889999999998888764 6788777666664
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1.5e-13 Score=139.40 Aligned_cols=261 Identities=16% Similarity=0.074 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 039931 361 SIIAAYSRAGLEENAFEAYKIMHQFGLTP-SSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRI 439 (783)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 439 (783)
.+...+.+.|++++|+++++.......+| |...|..+.......++.+.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34566666777777777775443332122 3333444444555667777777777777665433 45556666665 567
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 440 GDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIG-FVPNNFAYNSLIAGFCNRGKLNEALKL 518 (783)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l 518 (783)
+++++|.+++....++. +++..+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777766654442 345556666677777777777777777765432 234556666677777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 039931 519 EREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLD 598 (783)
Q Consensus 519 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 598 (783)
+++..+..+. |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...+++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 7777776433 56667777777777777777777777766542 3455666777777777777777777777777632 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 599 PDITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 599 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
.|..+...+.+++...|+.++|.++..+..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 356666777777777777777777776654
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=1.6e-13 Score=139.19 Aligned_cols=222 Identities=18% Similarity=0.130 Sum_probs=58.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 039931 364 AAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLI 443 (783)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 443 (783)
......++++.|.+.++++...+.. +...+..++.. ...+++++|.++++...+.. +++..+...+..+.+.++++
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~ 127 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYD 127 (280)
T ss_dssp ----------------------------------------------------------------------H-HHHTT-HH
T ss_pred ccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHH
Confidence 3333344444444444444433211 22233333333 34444444444444333321 23333344444444444444
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 444 GAQSLWNELNRRK-IFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 444 ~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
++.++++.+.... ...+...|..+...+.+.|+.++|++.+++..+.. +.|....+.++..+...|+.+++.++++..
T Consensus 128 ~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 128 EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 4444444433221 12234444444444444455555555554444431 112334444444444444444444444444
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039931 523 RQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKM 592 (783)
Q Consensus 523 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 592 (783)
.+.. +.|+..+..+..+|...|+.++|+..|++..+.. +.|......+.+++...|+.++|.++..+.
T Consensus 207 ~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 207 LKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 3332 2233344444444555555555555555544431 224444444445555555555555444443
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=2.3e-07 Score=96.29 Aligned_cols=473 Identities=11% Similarity=0.046 Sum_probs=251.4
Q ss_pred hHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHH
Q 039931 211 AYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEE-GLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTF 289 (783)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 289 (783)
.|...+..+.++|++... +..|+..... -+......|...+......+-++-+..+|++.++. ++..-
T Consensus 104 Iwl~Ylq~l~~Q~~iT~t-------R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~ 172 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRT-------RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAR 172 (835)
T ss_pred HHHHHHHHHHhcchHHHH-------HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHH
Confidence 344444444455555444 4444444332 11122335666666666666666666666666653 33335
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCC------CCCcHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHH
Q 039931 290 NIIVSGHCKYGGMEDGDRLLRDLSVSG------LLPNCTLYDITVAGLCWAGRLD---EAMEFFEDMFEKGISPSIFAFN 360 (783)
Q Consensus 290 ~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~ 360 (783)
...|..+++.+++++|.+.+..++... .+.+...|.-+-+...++-+.- ....+++.+..+-...=-..|.
T Consensus 173 eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 173 EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence 555566666666666666666554321 1223334444444333332222 1222333333221111133466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------------ChhHHHHHHHHHH
Q 039931 361 SIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKG----------------------RLPEAWDLLCKMI 418 (783)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~~~ 418 (783)
+|.+-|.+.|.+++|.++|++....- .++.-|+.+.+.|..-. +++-.+.-|+.+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 66666666666666666666665531 23333344444433211 1223333344444
Q ss_pred HcCC-----------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHccCChHHHH
Q 039931 419 EKGF-----------PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFP------DAVAFSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 419 ~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~ 481 (783)
..+. +.++..|..-+. +..|+..+-...+.+..+. +.| -...|..+...|-..|+++.|.
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 3321 123333333322 2346677777777777653 112 2346778888888899999999
Q ss_pred HHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCC-------CHHHHHHHHHHH
Q 039931 482 GVFLEMSRIGFVPN---NFAYNSLIAGFCNRGKLNEALKLEREMRQKG----------LLP-------DNFTFNIIINGF 541 (783)
Q Consensus 482 ~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----------~~p-------~~~~~~~li~~~ 541 (783)
.+|++..+...+-- ..+|......-.+..+++.|+++.+.....- ..| +...|...++..
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 99988876533211 2344444444456677888888777655321 111 233456666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCH
Q 039931 542 CKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCN---IRKM 617 (783)
Q Consensus 542 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~---~g~~ 617 (783)
-..|-++....+++.+++..+- ++.........+-.+.-++++.+++++-+..--.|+. ..|+..+.-+.+ ..++
T Consensus 488 Es~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 6778888888888888765432 2222222222233455678888888776653223444 556666655443 2478
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhhHHHH
Q 039931 618 NQAAMMLDELVSAGIVPNTVTYNTLMNGVCC---DILDRAIIIAAKLLKMAFVPNV--VTTNVLLSHFCKQGMPEKTLLW 692 (783)
Q Consensus 618 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~ 692 (783)
+.|..+|++.++ |..|...-+-.|+.+-.. |....|+.+++++... +.+.. ..|+.+|.--...=-+..-..+
T Consensus 567 EraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 567 ERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 888899988888 555655433333333221 5667788888876542 34433 5677777643333234455677
Q ss_pred HHHHhhcCCC
Q 039931 693 GQKLSEISFD 702 (783)
Q Consensus 693 ~~~~~~~~~~ 702 (783)
++++++.=|+
T Consensus 645 YekaIe~Lp~ 654 (835)
T KOG2047|consen 645 YEKAIESLPD 654 (835)
T ss_pred HHHHHHhCCh
Confidence 7777776544
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.8e-11 Score=127.27 Aligned_cols=285 Identities=13% Similarity=0.089 Sum_probs=178.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHH
Q 039931 406 RLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKI--FPDAVAFSAYINGLSKAGLVDEAYGV 483 (783)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~ 483 (783)
+..+|...|+.+...-.. ...+...+..+|...+++++|.++|+.+.+..+ .-+...|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456777777774444222 345666677777788888888888877766521 11556666666544321 12222
Q ss_pred HH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 039931 484 FL-EMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGL 562 (783)
Q Consensus 484 ~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 562 (783)
+. ++.+. -+-.+.+|.++.++|.-+++.+.|++.|++.++.+.. ...+|+.+.+-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 22 22222 1345667777777777777777777777777765322 5566776666677777777777777777652
Q ss_pred CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 039931 563 VP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYN 640 (783)
Q Consensus 563 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 640 (783)
.| +-..|..|.-.|.+.++++.|+-.|+++.+ +.| +.+....+...+-+.|+.++|++++++......+--..-|.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 33 334556666777777777888777777776 455 45666667777777777788888777776532221112232
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC
Q 039931 641 TLMNGVCCDILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDF 703 (783)
Q Consensus 641 ~li~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 703 (783)
...--++.+++++|+..++++.+ +.|+. ..+..+...|.+.|+.+.|+..+--+..++|+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 22222334677777777777777 56655 455566667777777777777777777777663
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=3.1e-10 Score=107.64 Aligned_cols=289 Identities=16% Similarity=0.085 Sum_probs=186.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCCHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPN---CTLYDITVAGLCWAGRLDEA 340 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 340 (783)
.++.++|.++|-+|.+.... +..+.-+|.+.|.+.|..+.|.+++..+.++.-.+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 57889999999999885322 445566777888888999999999888877522211 22334556667788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 039931 341 MEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSS----CTCSSLLVGLCKKGRLPEAWDLLCK 416 (783)
Q Consensus 341 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~ 416 (783)
+.+|..+.+.+.- -......|+..|-...++++|++.-+++.+.+-.+.. ..|.-+...+....+++.|...+.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888888775322 3445667788888888888888888877776544332 2244444455556777778888877
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 039931 417 MIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNN 496 (783)
Q Consensus 417 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 496 (783)
..+.+.. ++..--.+.+.....|+++.|.+.++.+.+.++.--+.+...|..+|.+.|+.++....+..+.+.. ++.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 7776443 4455556667777778888888888777777544344556667777777777777777777777653 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 039931 497 FAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCK---QGRMKPAIDAFMDMYR 559 (783)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 559 (783)
..-..+.+......-.+.|...+.+-..+ +|+...+..+|+.-.. .|...+-+.+++.|+.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333333333334445555554444443 5677777777765533 2334455555555553
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=2e-07 Score=97.09 Aligned_cols=448 Identities=13% Similarity=0.110 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
..|...+.+| ..+++...++..+.+++ +++....|.....-.+...|+-++|.......++.++ .+.+.|..++-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHH
Confidence 4566666655 45677778888877777 3455556666666667777888888888877777655 5667788777777
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 039931 185 CRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKA 264 (783)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 264 (783)
-...++++|+..+...++.+ +.|...+.-+--.-++.|+++..... -.++++..+. ....|..++.++.-.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t---r~~LLql~~~-----~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET---RNQLLQLRPS-----QRASWIGFAVAQHLL 156 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHhhhh-----hHHHHHHHHHHHHHH
Confidence 77888888888888888765 45566666555555555666544210 0122222222 556788888888888
Q ss_pred CChhHHHHHHHHHHhCC-CCCCHhHHHHHHH------HHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCH
Q 039931 265 RDIDQANMLYEEMRSRD-IAPDAVTFNIIVS------GHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRL 337 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 337 (783)
|+...|..+.++..+.- -.|+...|..... ...+.|..++|.+.+..-... +......-..-...+.+.+++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhH
Confidence 99999999998887763 2455555544332 234455666665555443221 111111222233445556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHH
Q 039931 338 DEAMEFFEDMFEKGISPSIFAFNSIIA-AYSRAGLEENAF-EAYKIMHQFGLTPSSCTCSSLLVGLCK-KGRLPEAWDLL 414 (783)
Q Consensus 338 ~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~ 414 (783)
++|..++..++.. .||..-|+.... ++.+-.+.-++. .+|....+. .|....-..+--.... ..-.+..-..+
T Consensus 236 EeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 236 EEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHH
Confidence 6666666666654 334443333332 222222222232 344433332 1111110000000111 11112222333
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 039931 415 CKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVP 494 (783)
Q Consensus 415 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 494 (783)
....+.|+++ ++..+...|-.....+ +++++. ..|...+.+...-...+.. . .-+|
T Consensus 312 ~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lv--------t~y~~~L~~~~~f~~~D~~-------~--~E~P 367 (700)
T KOG1156|consen 312 RPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLV--------TSYQHSLSGTGMFNFLDDG-------K--QEPP 367 (700)
T ss_pred HHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHH--------HHHHhhcccccCCCccccc-------c--cCCc
Confidence 3444444432 2222222221111000 111110 0000000000000000000 0 0133
Q ss_pred CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 039931 495 NNF--AYNSLIAGFCNRGKLNEALKLEREMRQKGLLPD-NFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNT 571 (783)
Q Consensus 495 ~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 571 (783)
... |+..++..+-+.|+++.|..+++....+ .|+ +..|..-...+...|.+++|...+++..+.. .||...=.-
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsK 444 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSK 444 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHH
Confidence 332 3344566666777777777777776655 333 2334444566667777777777777766543 344333323
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 039931 572 LIGGYCKALDIVRADELVNKMYAGG 596 (783)
Q Consensus 572 li~~~~~~g~~~~A~~~~~~m~~~g 596 (783)
-..-..++++.++|.++.....+.|
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhcc
Confidence 3444455667777777776666654
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=8.7e-09 Score=105.30 Aligned_cols=475 Identities=14% Similarity=0.073 Sum_probs=304.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
...||..--.+.++|.-.|+.+.|..+...-.-. ..+..........+.+..++++|..++.... +..+++.+-.
T Consensus 45 l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~---~~~~~f~yy~ 119 (611)
T KOG1173|consen 45 LTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGH---VETNPFSYYE 119 (611)
T ss_pred ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhhcchhhcc
Confidence 3456666778999999999999998887654322 3567778888899999999999999887431 1122222211
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHH
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLN 259 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 259 (783)
-=. ...-..+.+.+.. --+.-.+.|--.|++-.|+...++|+..+.+.... |+..|.++..
T Consensus 120 ~~~--~~~l~~n~~~~~~-------------~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~ 180 (611)
T KOG1173|consen 120 KDA--ANTLELNSAGEDL-------------MINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEK 180 (611)
T ss_pred hhh--hceeccCcccccc-------------cccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHH
Confidence 000 0000011111000 01112223334455555544444456666555443 4434333322
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC----CCCHhHHHHHHHHH-HccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 039931 260 GYVKARDIDQANMLYEEMRSRDI----APDAVTFNIIVSGH-CKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWA 334 (783)
Q Consensus 260 ~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (783)
.-. ...-.+.+.|+.+..... .-+......+.... ++..+. .....-.+..-.+...+......-..-+...
T Consensus 181 lvs--~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~ 257 (611)
T KOG1173|consen 181 LVS--AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRNEDESLIGLAENLDLLAEKADRLYYG 257 (611)
T ss_pred HHH--HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccCchhhhhhhhhcHHHHHHHHHHHHHc
Confidence 211 111223333333332211 11222222222211 111110 0000000011112233455555566667788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039931 335 GRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLL 414 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 414 (783)
+++.+..++++.+.+.. ++....+..-|..+...|+..+-..+=.++.+.- +....+|-++.--|...|+.++|.+.|
T Consensus 258 c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 258 CRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred ChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 99999999999998863 3355666667778899999988888888888863 446789999999999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 039931 415 CKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVP 494 (783)
Q Consensus 415 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 494 (783)
.+....+.. =...|-.+...|.-.|.-++|...+...-+.-.. ....+--+.--|.+.+..+-|.+.|.+.... .+.
T Consensus 336 SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~ 412 (611)
T KOG1173|consen 336 SKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APS 412 (611)
T ss_pred HHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCC
Confidence 988765433 3457889999999999999999999877664111 1111222334577889999999999998875 355
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 039931 495 NNFAYNSLIAGFCNRGKLNEALKLEREMRQK--GLL----PDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVT 568 (783)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 568 (783)
|+..++-+.-...+.+.+.+|..+|+..... ... --..+++.|..+|.+.+++++|+..+++.+... +.|..+
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~ 491 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDAST 491 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhH
Confidence 7777887777777889999999999987632 111 134568889999999999999999999999762 458899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMH 609 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 609 (783)
+.++.-.|...|+++.|++.|.+.+. +.||..+-..++.
T Consensus 492 ~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 492 HASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 99999999999999999999999885 7898877666665
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1.8e-09 Score=105.99 Aligned_cols=286 Identities=14% Similarity=0.118 Sum_probs=193.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDL 413 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 413 (783)
.|++.+|+++..+-.+.+-. ....|..-+.+--+.|+.+.+-.++.+.-+..-.++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57777777777776665444 34445555666667777777777777776653344555566666677777777777777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCChHHHHHHHHH
Q 039931 414 LCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDA-------VAFSAYINGLSKAGLVDEAYGVFLE 486 (783)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 486 (783)
++++.+.+.. ++........+|.+.|++.....++..+.+.+.-.|. .+|+.+++-....+..+.-...+++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777776544 6667777777777788888877777777777655443 3455555555555555554555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039931 487 MSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDI 566 (783)
Q Consensus 487 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 566 (783)
..+. .+.++..-.+++.-+.++|+.++|.++..+..+++..|+. ..+ -.+.+-++.+.-++..++..+. .+-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHH-HhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 5433 3445556667777778888888888888888877666552 112 2345566666666666665543 22345
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 567 VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
..+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|+.+.+++.+.|+..+|.+++++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6777888888888888888888887776 468888888888888888888888888877653
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=4.4e-11 Score=124.37 Aligned_cols=283 Identities=13% Similarity=0.067 Sum_probs=167.4
Q ss_pred hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 039931 267 IDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGL--LPNCTLYDITVAGLCWAGRLDEAMEFF 344 (783)
Q Consensus 267 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 344 (783)
..+|+..|....+. +.-.......+..+|...+++++|+++|+.+.+... ..+..+|.+.+..+-+.-.+. -+-
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---YLA 410 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---HHH
Confidence 45666666663332 221223344455566666666666666666655422 134555655554432221111 111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 039931 345 EDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTP-SSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFP 423 (783)
Q Consensus 345 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (783)
+.+.+... -.+.+|-++.+.|.-+++.+.|++.|++..+.+ | ...+|+.+..-+....++|.|...|+..+.....
T Consensus 411 q~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 411 QDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 22222211 156677777777777777777777777776643 3 5566776666777777777777777766655222
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 424 INKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503 (783)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 503 (783)
+-.+|-.+...|.+.++++.|+-.|+...+-++. +.+....+...+-+.|+.++|++++++..... +-|+..--..+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 3334445666777777777777777777766554 56666666667777777777777777776653 22333333345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
..+...+++++|+..++++.+.-+. +...+..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 5556667777777777777765222 4555666667777777777777777776664
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=6.8e-10 Score=105.37 Aligned_cols=287 Identities=13% Similarity=0.064 Sum_probs=154.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHH
Q 039931 335 GRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS---SCTCSSLLVGLCKKGRLPEAW 411 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~ 411 (783)
.+.++|.++|-+|.+.... +..+.-+|.+.|-+.|..+.|+.+.+.+.+..--+. ....-.|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4455555555555553222 333444555555555555555555555544210000 112233444455566666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHH
Q 039931 412 DLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPD----AVAFSAYINGLSKAGLVDEAYGVFLEM 487 (783)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 487 (783)
.+|..+.+.+.- -......|+..|-...+|++|+++-+++.+.+..+. ...|..+...+....+++.|..++.+.
T Consensus 128 ~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 666666554221 334455566666666666666666666555543332 123455555555666777777777776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 039931 488 SRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIV 567 (783)
Q Consensus 488 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 567 (783)
.+.. +..+..-..+.+.....|+++.|.+.++.+.+.++.--+.+...|..+|.+.|+.++...++..+.+. .++..
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~ 283 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGAD 283 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCcc
Confidence 6643 12222333445556667777777777777776654444556666677777777777777777777664 33333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 039931 568 TYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCN---IRKMNQAAMMLDELV 628 (783)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~ 628 (783)
.-..+...-....-.+.|..++.+-+.. .|+...+..+++.... .|...+.+.++..|.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 3344444333333445555444443332 5777666666655433 244555566666665
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=2.1e-09 Score=105.44 Aligned_cols=293 Identities=14% Similarity=0.111 Sum_probs=179.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEF 343 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 343 (783)
.|++..|.++..+-.+.+-. ....|..-..+--+.|+.+.+-+++.++.+....++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 68999999999887776544 34456666677778899999999999888876667777777788888888999999888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 039931 344 FEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFP 423 (783)
Q Consensus 344 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (783)
.+++.+.++. +........++|.+.|++.....++..+.+.|.-.++..-..
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 8888887665 677778888888888888888888888888876544321100
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 424 INKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503 (783)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 503 (783)
...+|+.+++-....+..+.-...|+..... ...++..-.+++.-+.++|+.++|.++..+..+.+..|...+ .
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----L 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----H
Confidence 0112333333333333333333333333221 112344444555555566666666666666555544444111 1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIV 583 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 583 (783)
-.+.+-++.+.-++..++-.+.... ++-.+.+|...|.+.+.+.+|.+.|+..++. .|+..+|+-+.+++.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 1233445555555544444443222 3455555666666666666666666655553 466666666666666666666
Q ss_pred HHHHHHHHHHH
Q 039931 584 RADELVNKMYA 594 (783)
Q Consensus 584 ~A~~~~~~m~~ 594 (783)
+|.+..++...
T Consensus 379 ~A~~~r~e~L~ 389 (400)
T COG3071 379 EAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=1.9e-08 Score=106.63 Aligned_cols=462 Identities=15% Similarity=0.092 Sum_probs=243.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH---HHccCChhHH-------------------HHH----HHHHHhCC
Q 039931 263 KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSG---HCKYGGMEDG-------------------DRL----LRDLSVSG 316 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~---~~~~g~~~~A-------------------~~~----~~~~~~~~ 316 (783)
+.+..++++.-+.....++...+..++..+..+ |...++.+++ ... +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 446677777777777777666666666655443 3344555444 111 11222223
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 039931 317 LLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSS 396 (783)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 396 (783)
+.-+..+|..|.-++..+|+++.+.+.|++....-+. ....|+.+...|...|.-..|..+++.-......|+..+-..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4446666777777777778888777777776653222 556677777777777777777777776655433344443333
Q ss_pred HHHH-H-HhcCChhHHHHHHHHHHHc--CC--CCCHhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCC
Q 039931 397 LLVG-L-CKKGRLPEAWDLLCKMIEK--GF--PINKVAFTVLLDGYFRI-----------GDLIGAQSLWNELNRRKIFP 459 (783)
Q Consensus 397 li~~-~-~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~p 459 (783)
++.. | .+.+..++++++-.+++.. +. ...+..|-.+.-+|... ....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 3332 2 2345666666666665551 11 11233444444444321 1224556666666555433
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 460 DAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIIN 539 (783)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 539 (783)
|+...-.+.--|+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+.....-.. |......-++
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhh
Confidence 222222233345566777777777777777654556667777776777777777777777765543111 1111111122
Q ss_pred HHHhcCChHHHHHHHHHHHHc---------------------CC-----CC--ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 540 GFCKQGRMKPAIDAFMDMYRT---------------------GL-----VP--DIVTYNTLIGGYCKALDIVRADELVNK 591 (783)
Q Consensus 540 ~~~~~g~~~~A~~~~~~m~~~---------------------g~-----~p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 591 (783)
.-..-++.++|+.....++.. |+ .| ...++..+..-... +.+.+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc-
Confidence 222344555554443333210 00 00 01112111111110 0000000000
Q ss_pred HHHCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---hccHHHHHHHHHH
Q 039931 592 MYAGGLDP--D------ITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVC---CDILDRAIIIAAK 660 (783)
Q Consensus 592 m~~~g~~p--~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~~~~~~A~~~~~~ 660 (783)
+.+....| + ...|......+.+.++.++|...+.+... +.|-. .+..-+.|.+ ++..++|.+.|..
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~-~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLS-ASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhh-HHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11111112 2 12344555677777777777777776654 23322 2222233322 4677778877777
Q ss_pred HHHcCCCCCH-HHHHHHHHHHHhcCChhhHHH--HHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcch
Q 039931 661 LLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLL--WGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDF 737 (783)
Q Consensus 661 ~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~--~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~ 737 (783)
.+. +.|+. ...+++...+.+.|+..-|.. ++..+.+++|. ++.+|..|+....+ +++.+.+-+-+..++.++.
T Consensus 710 Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~-~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 710 ALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKK-LGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH-ccchHHHHHHHHHHHhhcc
Confidence 766 55655 456677777777777766666 77788888876 77788777777543 4444444444444444433
No 62
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=2.7e-07 Score=100.38 Aligned_cols=596 Identities=10% Similarity=-0.045 Sum_probs=348.5
Q ss_pred hHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 039931 86 SKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDM 165 (783)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~ 165 (783)
....+..+.++.+..+.=..+|..|...|+..-+...|.+.|+++.+.+ ..+..++......|++..+++.|....-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4455666666666555555688999999988888889999999998887 466778888999999999999998884444
Q ss_pred HhcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHH
Q 039931 166 IHLGPR-PSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 166 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
.+..+. .-..-|--..-.|...++...|..-|+...+.. +.|...|..+..+|..+|++..| .++|++...
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~A-------lKvF~kAs~ 624 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHA-------LKVFTKASL 624 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehH-------HHhhhhhHh
Confidence 333221 011123334445667888889999999888765 56788999999999999999888 577877665
Q ss_pred CCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHh---
Q 039931 245 EGLSPNV-VVYNALLNGYVKARDIDQANMLYEEMRSR------DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSV--- 314 (783)
Q Consensus 245 ~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--- 314 (783)
.. |+. ..---.....|-.|.+.+|+..+...... +..--..++..+...+.-.|-..+|..++++-++
T Consensus 625 Lr--P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 625 LR--PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred cC--cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 32 222 22222334566789999999988877642 1111122333333333333444444444444322
Q ss_pred ----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH---H---HHHHHHHHHHh
Q 039931 315 ----SGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLE---E---NAFEAYKIMHQ 384 (783)
Q Consensus 315 ----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~ 384 (783)
.....+...|-. ...|..+|-...- . .|+......+..-.-..+.. + -+.+.+-.-.+
T Consensus 703 ~~l~h~~~~~~~~Wi~----------asdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls 770 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIV----------ASDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS 770 (1238)
T ss_pred HHHHHhhhhhHHHHHH----------HhHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH
Confidence 111111111111 1223333333321 0 12222222222212222211 1 11111111111
Q ss_pred CCCCCCHHHHHHHHHHHHh----c----CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 039931 385 FGLTPSSCTCSSLLVGLCK----K----GRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRK 456 (783)
Q Consensus 385 ~~~~p~~~~~~~li~~~~~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 456 (783)
+..+..+|..++..|.+ . .+...|+..+.+.++..- -+..+|+.|.-. ...|.+.-|.--|-+-....
T Consensus 771 --l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se 846 (1238)
T KOG1127|consen 771 --LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE 846 (1238)
T ss_pred --HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc
Confidence 12234455555554443 1 123466777777666532 266777777655 55566666666665554443
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--HHH--CCCCCCHH
Q 039931 457 IFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLERE--MRQ--KGLLPDNF 532 (783)
Q Consensus 457 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~--m~~--~~~~p~~~ 532 (783)
+. ...+|..+.-.+.++.+++.|...|...+... +.|...|..........|+.-++..+|.. ... .|-.|+..
T Consensus 847 p~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~ 924 (1238)
T KOG1127|consen 847 PT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQ 924 (1238)
T ss_pred cc-chhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhh
Confidence 33 66778888888889999999999999887753 34555565555555567877788877775 221 23344544
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH----------HHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH
Q 039931 533 TFNIIINGFCKQGRMKPAIDAFMD----------MYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAG-GLDPDI 601 (783)
Q Consensus 533 ~~~~li~~~~~~g~~~~A~~~~~~----------m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~ 601 (783)
-|-.........|+.++-+..-+. ... |.+.+...|.+.....-..+.+..|.++..+...- ...-|.
T Consensus 925 Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~ 1003 (1238)
T KOG1127|consen 925 YWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDE 1003 (1238)
T ss_pred HHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444556665554333332 222 33445778888888888888888888877775531 123456
Q ss_pred HHHHH----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHcC-CCCCH-HHHHH
Q 039931 602 TTYNI----RMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMA-FVPNV-VTTNV 675 (783)
Q Consensus 602 ~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~~-~~p~~-~~~~~ 675 (783)
..|+. ..+.++..|.++.|...+..... ..|...-..-+..+..++++++.+.|++++.-. -..|. +....
T Consensus 1004 sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~k 1080 (1238)
T KOG1127|consen 1004 SQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCK 1080 (1238)
T ss_pred hhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 66663 34667778888877655443221 123333344444467789999999999977521 12232 22333
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 039931 676 LLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAY 715 (783)
Q Consensus 676 ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y 715 (783)
++-.....+..+.|...+-+...+.+. +..+...|.-.|
T Consensus 1081 va~~~g~~~~k~~A~~lLfe~~~ls~~-~~~sll~L~A~~ 1119 (1238)
T KOG1127|consen 1081 VAVCMGLARQKNDAQFLLFEVKSLSKV-QASSLLPLPAVY 1119 (1238)
T ss_pred HHHHHhhcccchHHHHHHHHHHHhCcc-chhhHHHHHHHH
Confidence 444556778889999888888877764 777666666554
No 63
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.36 E-value=8.6e-07 Score=96.61 Aligned_cols=607 Identities=13% Similarity=0.014 Sum_probs=317.0
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 89 MVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSE--SAITILFKSLLRVGDYGSVWKLFRDMI 166 (783)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~ll~~l~~~g~~~~A~~~~~~~~ 166 (783)
+...+...+...+.+...+..+...|++....+.|..+.-..-+.. +.-. ..|-.+.-.+...+++.+|+..|...+
T Consensus 511 A~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL 589 (1238)
T KOG1127|consen 511 AKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL 589 (1238)
T ss_pred HHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHh
Confidence 3444445555556677778888888888888888887744333321 1111 123334444667788888888888888
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHC
Q 039931 167 HLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVAD-FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEE 245 (783)
Q Consensus 167 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~ 245 (783)
+..| .|...|..++.+|.+.|++..|.++|.+..... |+ .+.---..-.-|..|++++|+..++.-...+..-. .
T Consensus 590 R~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~ 665 (1238)
T KOG1127|consen 590 RTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-T 665 (1238)
T ss_pred cCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-H
Confidence 7765 577788888888888888888888888776543 33 22222233345666777777543221111111000 0
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHH-------HhCCCCCCHhHHHHHHHH-----------------------
Q 039931 246 GLSPNVVVYNALLNGYVKARDIDQANMLYEEM-------RSRDIAPDAVTFNIIVSG----------------------- 295 (783)
Q Consensus 246 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~g~~p~~~t~~~ll~~----------------------- 295 (783)
+..--..++-.+...+.-.|-..+|.+.++.- ......-+...|-.+-.+
T Consensus 666 ~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q 745 (1238)
T KOG1127|consen 666 GQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQ 745 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHH
Confidence 00001122222222222222222333332222 111111122222222111
Q ss_pred HHccCCh---h---HHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 296 HCKYGGM---E---DGDRLLRDLSVSGLLPNCTLYDITVAGLCW----A----GRLDEAMEFFEDMFEKGISPSIFAFNS 361 (783)
Q Consensus 296 ~~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~----g~~~~A~~~~~~m~~~g~~p~~~~~~~ 361 (783)
.-..+.. + -|.+.+-.-.+ ...+..+|..|+..|.+ . .+...|+..+.+.++..-. +..+||.
T Consensus 746 ~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~Wna 822 (1238)
T KOG1127|consen 746 LEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNA 822 (1238)
T ss_pred HHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHH
Confidence 1111111 1 00011100000 11122233333333322 1 1234667777776654222 6677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 039931 362 IIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGD 441 (783)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 441 (783)
|.-. ...|++.-|..-|-+-.... +.+..+|..+.-.+.+..+++.|...|.......+. |...|-......-..|+
T Consensus 823 LGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 823 LGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGR 899 (1238)
T ss_pred HHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHH
Confidence 6544 55567777766666555443 335667777777788888888888888887776433 66666666666667787
Q ss_pred HHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC---------CCCCCHHHHHHHHHHHHh
Q 039931 442 LIGAQSLWNELN----RRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRI---------GFVPNNFAYNSLIAGFCN 508 (783)
Q Consensus 442 ~~~A~~~~~~~~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~p~~~~~~~li~~~~~ 508 (783)
.-++..+|..-- ..|-.|+..-|-........+|+.++-+...+.+... +.+.+...|.......-+
T Consensus 900 ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEh 979 (1238)
T KOG1127|consen 900 IIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEH 979 (1238)
T ss_pred HHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHH
Confidence 777777776521 2233445555544444455666665544444433221 334456677777766667
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 039931 509 RGKLNEALKLEREMRQK-GLLPDNFTFNII----INGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIV 583 (783)
Q Consensus 509 ~g~~~~A~~l~~~m~~~-~~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 583 (783)
.+.+..|..+..+.... ..+-+...|+.+ ...++..|.++.|..-+..... ..+..+..+-+.. .-.++++
T Consensus 980 L~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~ 1055 (1238)
T KOG1127|consen 980 LEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFF 1055 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHH
Confidence 77777776666554321 012344555533 3344556666665544432211 1122222222333 3467999
Q ss_pred HHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhhccHHHHHHHHHH
Q 039931 584 RADELVNKMYAG-GLDPDI-TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNG-VCCDILDRAIIIAAK 660 (783)
Q Consensus 584 ~A~~~~~~m~~~-g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~A~~~~~~ 660 (783)
++.+.|+++..- .-..|. .....++-+....+.-+.|..++-+.... -.|+..+.-++-.. ....+-.....+.++
T Consensus 1056 ~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssailee 1134 (1238)
T KOG1127|consen 1056 SSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEE 1134 (1238)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHH
Confidence 999999998872 112232 33455556666777788888777666542 12333222221111 111111111112222
Q ss_pred HHH------cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 039931 661 LLK------MAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYH 716 (783)
Q Consensus 661 ~~~------~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~ 716 (783)
+.+ ...+|- -..-+ -|.+.|+-....+.+++....+|. |+..|..|..-|+
T Consensus 1135 l~kl~k~e~~~~~~~--ll~e~--i~~~~~r~~~vk~~~qr~~h~~P~-~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1135 LEKLLKLEWFCWPPG--LLKEL--IYALQGRSVAVKKQIQRAVHSNPG-DPALWSLLSVRYA 1191 (1238)
T ss_pred HHHhhhhHHhccChh--HHHHH--HHHHhhhhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 221 112221 11112 357789999999999999999997 9999998886554
No 64
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=7.7e-07 Score=96.66 Aligned_cols=249 Identities=12% Similarity=0.057 Sum_probs=139.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (783)
-+..+.+|+..|+++++.-.. .+.|..|+. -.+++.+.+ -..+.+.++...+.+..+ ...-.+.+...+..
T Consensus 484 p~KVi~cfAE~Gqf~KiilY~---kKvGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme 554 (1666)
T KOG0985|consen 484 PAKVIQCFAETGQFKKIILYA---KKVGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFME 554 (1666)
T ss_pred cHHHHHHHHHhcchhHHHHHH---HHcCCCccH---HHHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHH
Confidence 345666777777777555443 456777774 456666666 678888888888876433 33445666777777
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 039931 187 NGCIRIGESLLHVMHKYMCVADFF-AYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKAR 265 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 265 (783)
.+....+..++-..++.. .|+.. .-+.|+..-.. +- -++-+.+...+.- +..-|-.+.+.|.++|
T Consensus 555 ~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL~-~a-----------PqVADAILgN~mF-tHyDra~IAqLCEKAG 620 (1666)
T KOG0985|consen 555 LNLIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNLV-HA-----------PQVADAILGNDMF-THYDRAEIAQLCEKAG 620 (1666)
T ss_pred HHhhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHhc-cc-----------hHHHHHHHhcccc-ccccHHHHHHHHHhcc
Confidence 777777777776666543 34432 22333322211 11 2333444433322 2222666677777777
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhHHHHH-----HHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 039931 266 DIDQANMLYEEMRSRDIAPDAVTFNII-----VSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEA 340 (783)
Q Consensus 266 ~~~~A~~~~~~m~~~g~~p~~~t~~~l-----l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (783)
-...|++.|.++... . -.+..+.+ +-.|.-.-.++++.+.++.|...++..|..+...+..-|+..=-.+.-
T Consensus 621 L~qraLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~l 697 (1666)
T KOG0985|consen 621 LLQRALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQAL 697 (1666)
T ss_pred hHHHHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHH
Confidence 777777776665431 1 11111111 112333345666777777777766666666655555556555555555
Q ss_pred HHHHHHHHHC-----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 341 MEFFEDMFEK-----------GISPSIFAFNSIIAAYSRAGLEENAFEAYKI 381 (783)
Q Consensus 341 ~~~~~~m~~~-----------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (783)
+++|+....- ++.-|......-|.+.|+.|++.+..++.++
T Consensus 698 i~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 698 IELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 5555554431 1333555555667777777777666665543
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.35 E-value=1.7e-06 Score=90.32 Aligned_cols=407 Identities=15% Similarity=0.079 Sum_probs=198.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 039931 99 LFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFN 178 (783)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 178 (783)
.+|..+.+.....-.+...|+-++|....+..++.+ .-+.+.|..+.-.+....++++|++.|..++..++ .|...|.
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilr 113 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILR 113 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHH
Confidence 344444445444445555666667776666666554 33445565555555555667777777777766554 4555555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCC-CCCChHHHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEG-LSPNVVVYNAL 257 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l 257 (783)
-+.-.-+..|+++.....-.+..+.. +.....|..+.-++--.|+...|. .+.++..+.- -.|+...|...
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~-------~il~ef~~t~~~~~s~~~~e~s 185 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL-------EILEEFEKTQNTSPSKEDYEHS 185 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhccCCCHHHHHHH
Confidence 55544555566665555555555432 233445555555555566666663 3444443322 12344443333
Q ss_pred HH------HHHhcCChhHHHHHHHHHHhCCCCCCHhHH-HHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHH-HHHH
Q 039931 258 LN------GYVKARDIDQANMLYEEMRSRDIAPDAVTF-NIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYD-ITVA 329 (783)
Q Consensus 258 i~------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~ 329 (783)
.. ...+.|.+++|++.+..-... +. |...+ .+-...+.+.+++++|..++..+...+ ||..-|. .+..
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHH
Confidence 22 234456666666665544322 11 22222 233445666777777777777777653 4444333 3334
Q ss_pred HHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 039931 330 GLCWAGRLDEAM-EFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLP 408 (783)
Q Consensus 330 ~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 408 (783)
++.+-.+..++. .+|....+.-.. ....-..=++......-.+..-+++..+.+.|+++ ++..+...|-.....+
T Consensus 262 ~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~ 337 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA 337 (700)
T ss_pred HHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH
Confidence 443333333444 555555443111 10000000111111122233344556666666543 2333333332222211
Q ss_pred HHHHHHHHHHH----cC----------CCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 039931 409 EAWDLLCKMIE----KG----------FPINKVAFT--VLLDGYFRIGDLIGAQSLWNELNRRKIFPD-AVAFSAYINGL 471 (783)
Q Consensus 409 ~a~~~~~~~~~----~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~ 471 (783)
-..++.-.+.. .| -+|.+..|+ .++..+-+.|+++.|...++..... .|+ +..|..-.+.+
T Consensus 338 ~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~ 415 (700)
T KOG1156|consen 338 FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIF 415 (700)
T ss_pred HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHH
Confidence 11111111111 00 133333333 3455666677777777777766654 222 23344444666
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039931 472 SKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKG 526 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 526 (783)
...|.+++|...+++..+.. .||...-.--..-..+.++.++|.++.....+.|
T Consensus 416 kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 416 KHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 66777777777777766543 3343333234444456666777777666666654
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.34 E-value=1.8e-07 Score=99.47 Aligned_cols=482 Identities=14% Similarity=0.046 Sum_probs=285.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChh
Q 039931 115 LRVEMSAEVMEILYRMREVGIMPSESAITILFKSL---LRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIR 191 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 191 (783)
.+.+..++++.-+......++.-+..++..+...+ ...|+.+++ .+...+ ..-..| ..+.+
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli-~es~i~--------------Re~~~ 301 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLI-EESLIP--------------RENIE 301 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHH-Hhhccc--------------cccHH
Confidence 34566778888888888777766666665544332 233444444 222222 111112 22222
Q ss_pred hHHH----HHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 039931 192 IGES----LLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDI 267 (783)
Q Consensus 192 ~A~~----~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 267 (783)
++.- .+.++....+..|...|..|.-++..+|+++.+ -+.|++....- .-....|+.+...|...|.-
T Consensus 302 d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~l-------ae~fE~~~~~~-~~~~e~w~~~als~saag~~ 373 (799)
T KOG4162|consen 302 DAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVL-------AEQFEQALPFS-FGEHERWYQLALSYSAAGSD 373 (799)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHhh-hhhHHHHHHHHHHHHHhccc
Confidence 2221 223333333456788888888889999999887 45666654322 22567899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHhHHHHHH-HHHH-ccCChhHHHHHHHHHHhC--CC--CCcHHHHHHHHHHHHh--------
Q 039931 268 DQANMLYEEMRSRDIAPDAVTFNIIV-SGHC-KYGGMEDGDRLLRDLSVS--GL--LPNCTLYDITVAGLCW-------- 333 (783)
Q Consensus 268 ~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~-------- 333 (783)
..|..+++.-......|+..+--.++ ..|. +.+..+++..+-.++... +. ......|-.+.-+|..
T Consensus 374 s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~ 453 (799)
T KOG4162|consen 374 SKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLK 453 (799)
T ss_pred hHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCCh
Confidence 99999998876654345444444443 3333 457788887777777652 11 1223334444444432
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 039931 334 ---AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEA 410 (783)
Q Consensus 334 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 410 (783)
.....++.+.+++..+.+.. |......+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|
T Consensus 454 seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 454 SERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 12355788888888876554 33334444556778889999999999999886667888899888889999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------CC-----C-CC-HH
Q 039931 411 WDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR---------------------KI-----F-PD-AV 462 (783)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------~~-----~-p~-~~ 462 (783)
+.+.+..... ...|......-+..-..-++.++++.....+... |. . .+ +.
T Consensus 533 l~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 533 LDVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 9999887765 1212222222233333456666665554443321 00 0 00 11
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVP--N------NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTF 534 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 534 (783)
++..+. +... -+.+.+..-.. +.+....| + ...|......+.+.+..++|...+.+..+..+ .....|
T Consensus 612 ~sr~ls-~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~ 687 (799)
T KOG4162|consen 612 TSRYLS-SLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVY 687 (799)
T ss_pred hhHHHH-HHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHH
Confidence 111111 1111 00000000000 11111112 2 12234455566677777777777776665532 245556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 535 NIIINGFCKQGRMKPAIDAFMDMYRTGLVPD-IVTYNTLIGGYCKALDIVRADE--LVNKMYAGGLDPDITTYNIRMHGY 611 (783)
Q Consensus 535 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~li~~~ 611 (783)
......+...|+.++|.+.|...+.. .|+ +.+..++...+.+.|+..-|.. ++..+.+.+ +.+...|..+...+
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVF 764 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 66666677778888888888777763 454 5677777788888887766666 777777743 23677788888888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 039931 612 CNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 612 ~~~g~~~~A~~~~~~m~~ 629 (783)
-+.|+.++|.+.|....+
T Consensus 765 k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHccchHHHHHHHHHHHh
Confidence 888888888888877664
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.1e-07 Score=91.36 Aligned_cols=218 Identities=15% Similarity=0.084 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHH
Q 039931 443 IGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAG-----FCNRGKLNEALK 517 (783)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-----~~~~g~~~~A~~ 517 (783)
+.|++++-.+.+. .| ..--.|+--|.+.+++.+|..+.+++.-. .|-......+..+ ......+.-|.+
T Consensus 271 EgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 271 EGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred ccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 4555555544443 11 12223344566667777776666655421 2322222222221 112223445666
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 039931 518 LEREMRQKGLLPDN-FTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGG 596 (783)
Q Consensus 518 l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 596 (783)
.|+-.-..+...|. .--.++...+.-..++++.+.+++.+...-...|...+ .+..+++..|++.+|+++|-+.....
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChh
Confidence 66555444433332 12334455555566677777777766654322333333 46677777777888877777665422
Q ss_pred CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--hccHHHHHHHHHHHHHcCCCCCHHHH
Q 039931 597 LDPDITTYNI-RMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVC--CDILDRAIIIAAKLLKMAFVPNVVTT 673 (783)
Q Consensus 597 ~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~~~~~A~~~~~~~~~~~~~p~~~~~ 673 (783)
+ .|..+|.+ |.++|.++++.+-|.+++-++ +-..+..+...+|..-| .+.+--|-+.|+.+.. ..|++.-|
T Consensus 424 i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 424 I-KNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred h-hhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 2 24445543 447777777777776665443 22233444555554433 2445555555665555 45666665
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=3.5e-07 Score=88.11 Aligned_cols=121 Identities=15% Similarity=0.142 Sum_probs=53.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH-HHHHHHHHcCC
Q 039931 503 IAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYN-TLIGGYCKALD 581 (783)
Q Consensus 503 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~ 581 (783)
...+.-..++++.+..++.+..--...|...+| +..+++..|++.+|.++|-+.....++ |..+|. .|.++|.+.++
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCC
Confidence 333334444555555555554433333333333 345555555555555555444332222 233332 33344455555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHH
Q 039931 582 IVRADELVNKMYAGGLDPDITTYNIRM-HGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 582 ~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~ 628 (783)
++-|.+++-++. .+.+..+.-.+| .-|.+++.+--|.+.|+.+.
T Consensus 444 P~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 444 PQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred chHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 555554443332 122222322222 44555555555555555443
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=7.5e-12 Score=88.54 Aligned_cols=50 Identities=48% Similarity=0.951 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 039931 249 PNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCK 298 (783)
Q Consensus 249 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 298 (783)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.9e-07 Score=91.74 Aligned_cols=310 Identities=14% Similarity=0.064 Sum_probs=215.2
Q ss_pred CCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 039931 388 TPSSCTCSSLLVG--LCKKGRLPEAWDLLCKMIEK-GFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAF 464 (783)
Q Consensus 388 ~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 464 (783)
.|+..+...-+.+ .+-.++...+.+.+-.+... -++-|+.....+...+...|+.++|...|++....++. ++...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~M 269 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAM 269 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhH
Confidence 3444444433443 34456666666655544433 35667888899999999999999999999988775321 22222
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 465 SAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQ 544 (783)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 544 (783)
......+.+.|+.+....+...+.... .-....|..-.......++++.|+.+-++-++.... +...|-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 333444567888888887777776531 112222333333445677889999988888876443 455555555678889
Q ss_pred CChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhc-CCHHHHH
Q 039931 545 GRMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRM-HGYCNI-RKMNQAA 621 (783)
Q Consensus 545 g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~-g~~~~A~ 621 (783)
|+.++|.-.|+..... .| +..+|..|+..|...|++.||.-..+...+. +.-+..+...+. ..+.-. .--++|.
T Consensus 348 ~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred cchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 9999999999988864 55 7889999999999999999999888777652 233455555442 333322 2346788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 039931 622 MMLDELVSAGIVPNTVTYNTLMNGVCC--DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEI 699 (783)
Q Consensus 622 ~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 699 (783)
.++++-+. +.|+-.--...+.-+|. |..+.++.++++.+. ..||....+.|.+.+...+.+.+|+..+..++.+
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 88887665 56765544444555553 789999999999888 6799999999999999999999999999999999
Q ss_pred CCCCCHHHH
Q 039931 700 SFDFDETSY 708 (783)
Q Consensus 700 ~~~~d~~~~ 708 (783)
+|+ |..+.
T Consensus 501 dP~-~~~sl 508 (564)
T KOG1174|consen 501 DPK-SKRTL 508 (564)
T ss_pred Ccc-chHHH
Confidence 987 66554
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.1e-06 Score=90.82 Aligned_cols=217 Identities=14% Similarity=0.147 Sum_probs=117.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHH--HHHHHH--
Q 039931 145 LFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNI--LINAYC-- 220 (783)
Q Consensus 145 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--li~~~~-- 220 (783)
=++.+...|++++|...-.+++..+| .+...+..-+-+++..+++++|+.+.+.-.. ..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 34445566777777777777776653 5555666666677777777777754443211 111222 345565
Q ss_pred hcCCcchHhhhccchHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh--HHHHHHHHHH
Q 039931 221 IRGQTSYALGKCGAGRMIFDMIQEEGLSPNV-VVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAV--TFNIIVSGHC 297 (783)
Q Consensus 221 ~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~ 297 (783)
+.++.++|+ ..++ |+.++. .+...-...+.+.|++++|+++|+.+.+.+.. |.. .-..++.+-
T Consensus 91 rlnk~Deal-------k~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~- 156 (652)
T KOG2376|consen 91 RLNKLDEAL-------KTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVA- 156 (652)
T ss_pred HcccHHHHH-------HHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH-
Confidence 456666663 2333 333333 25555556777888888888888888776432 211 111121110
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCH-HHHH
Q 039931 298 KYGGMEDGDRLLRDLSVSGLLPNCTLYDI---TVAGLCWAGRLDEAMEFFEDMFEKG-------------ISPSI-FAFN 360 (783)
Q Consensus 298 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~-~~~~ 360 (783)
-.-.+. + +......| ..+|.. ....+...|++.+|+++++...+.+ +.-.. ..--
T Consensus 157 ---a~l~~~-~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 157 ---AALQVQ-L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred ---HhhhHH-H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 001111 1 11111122 223322 2334667888888888888873211 00000 1122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 039931 361 SIIAAYSRAGLEENAFEAYKIMHQFGLTPSS 391 (783)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 391 (783)
.|.-.+...|+.++|..+|...++.+. +|.
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~ 258 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRNP-ADE 258 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhcC-CCc
Confidence 345566778999999999988888763 354
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=5.8e-09 Score=115.96 Aligned_cols=182 Identities=15% Similarity=-0.019 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 039931 337 LDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR---------AGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRL 407 (783)
Q Consensus 337 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 407 (783)
+++|...|++..+..+. +...|..+..+|.. .+++++|...+++..+.+. -+...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCH
Confidence 45666666666654322 33344444333321 1224455555555544331 1334444444444445555
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 039931 408 PEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEM 487 (783)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 487 (783)
++|...+++.++.++. +...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++.
T Consensus 355 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 5555555554444322 3334444444444455555555555444444322 1111112222233344444444444444
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 488 SRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 488 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
.+...+-+...+..+...+...|+.++|...+.++
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 33211112222333344444444444444444443
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=2e-09 Score=102.05 Aligned_cols=230 Identities=12% Similarity=0.035 Sum_probs=178.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 039931 108 DALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRN 187 (783)
Q Consensus 108 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 187 (783)
+.+.++|.+.|++.+|.+-|...++. .|-+.||-.|-++|.+-.+...|+.+|.+-+..-| .|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHH
Confidence 67889999999999999999998887 57888999999999999999999999999987532 4444455567788888
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 039931 188 GCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDI 267 (783)
Q Consensus 188 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 267 (783)
++.++|.+++....+.. +.++.....+...|.-.++.+-| .+.+.++.+.|+. +...|+.+.-+|.-.+++
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~A-------lryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMA-------LRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHH-------HHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 99999999999988765 45666666777777777888877 5778888888876 788888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCH--hHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 268 DQANMLYEEMRSRDIAPDA--VTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFE 345 (783)
Q Consensus 268 ~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (783)
+-++.-|++....--.|+. ..|..+.......|++..|.+-|+-....+.. ....+|.|.-.-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 8888888888765433443 34666666667777887787777777665433 45566666666677777777777777
Q ss_pred HHHHC
Q 039931 346 DMFEK 350 (783)
Q Consensus 346 ~m~~~ 350 (783)
.....
T Consensus 454 ~A~s~ 458 (478)
T KOG1129|consen 454 AAKSV 458 (478)
T ss_pred Hhhhh
Confidence 66654
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=4.3e-09 Score=116.98 Aligned_cols=166 Identities=10% Similarity=0.018 Sum_probs=95.5
Q ss_pred CChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 039931 545 GRMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD-ITTYNIRMHGYCNIRKMNQAAM 622 (783)
Q Consensus 545 g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 622 (783)
+++++|...+++.++. .| +...+..+...+...|++++|...++++.+. .|+ ...+..+...+...|++++|+.
T Consensus 318 ~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 318 NAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred hHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456666666666664 33 4556666666666667777777777776663 343 4556666666777777777777
Q ss_pred HHHHHHHCCCCCCHH--HHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 039931 623 MLDELVSAGIVPNTV--TYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEI 699 (783)
Q Consensus 623 ~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 699 (783)
.+++.++. .|+.. .+..+...+..+++++|...++++++.. .|+. ..+..+...+...|++++|...++++...
T Consensus 394 ~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 394 TINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 77776653 33321 1111111222356677777776665532 2333 33445555566677777777777776655
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 039931 700 SFDFDETSYKIMDRAYHNI 718 (783)
Q Consensus 700 ~~~~d~~~~~~l~~~y~~~ 718 (783)
.|. +....+.++..|+..
T Consensus 471 ~~~-~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 471 EIT-GLIAVNLLYAEYCQN 488 (553)
T ss_pred cch-hHHHHHHHHHHHhcc
Confidence 544 455555666555543
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=3e-11 Score=85.44 Aligned_cols=49 Identities=43% Similarity=0.907 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 039931 599 PDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVC 647 (783)
Q Consensus 599 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 647 (783)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+++|+++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666655
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=9e-09 Score=101.53 Aligned_cols=198 Identities=14% Similarity=0.065 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 427 VAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGF 506 (783)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 506 (783)
..+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 34444555555555555555555555443221 34445555555555555555555555555432 22334445555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHH
Q 039931 507 CNRGKLNEALKLEREMRQKGLL-PDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRA 585 (783)
Q Consensus 507 ~~~g~~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 585 (783)
...|++++|.+.+++....... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 5556666666666555543211 123344445555666666666666666665532 22344555556666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 586 DELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 586 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666553 12344445555556666666666666655544
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=1e-08 Score=101.19 Aligned_cols=197 Identities=16% Similarity=0.074 Sum_probs=103.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 039931 394 CSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSK 473 (783)
Q Consensus 394 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 473 (783)
+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 113344444444455555555555555544443322 33444444555555
Q ss_pred cCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 039931 474 AGLVDEAYGVFLEMSRIGF-VPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAID 552 (783)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 552 (783)
.|++++|.+.+++..+... +.....+..+...+...|++++|...+++..+.... +...+..+...+...|++++|..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555544211 112334444555566666666666666666654322 34556666666666777777777
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 553 AFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 553 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77666654 233445555566666666777777666666543
No 78
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=2.6e-06 Score=90.79 Aligned_cols=526 Identities=13% Similarity=0.096 Sum_probs=259.3
Q ss_pred CCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C--------C
Q 039931 102 SDFRVLDALLH--GYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL-G--------P 170 (783)
Q Consensus 102 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~-~--------~ 170 (783)
.|+.+-..+++ .|.-.|..+.|.+-.+-+. +...|..+.+.+++..+.+-|.-.+-.|... | -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 45555555553 4556677777766665544 2356777777777777777666555544321 0 0
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCC
Q 039931 171 RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPN 250 (783)
Q Consensus 171 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~ 250 (783)
.++ .+=.-+.......|.+++|+.++.+-.+ |..|-..|-..|.+++|++ +-+.- ..+ .=
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~e-------iAE~~--DRi-HL 857 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFE-------IAETK--DRI-HL 857 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHH-------HHhhc--cce-eh
Confidence 111 1111222234567888888888887664 3345566677788887742 22211 011 12
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHH----------HhCCC---------CCCHhHHHHHHHHHHccCChhHHHHHHHH
Q 039931 251 VVVYNALLNGYVKARDIDQANMLYEEM----------RSRDI---------APDAVTFNIIVSGHCKYGGMEDGDRLLRD 311 (783)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~g~---------~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 311 (783)
..||.....-+-..++.+.|++.|++. +...+ ..|...|.--...+-..|+.+.|+.++..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 346666666666677788888777653 11110 01222233333333445666666666655
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 039931 312 LSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSS 391 (783)
Q Consensus 312 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 391 (783)
... |-+++...|-.|+.++|-++-++-- |......|.+.|-..|++.+|...|.+...
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa------- 995 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA------- 995 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------
Confidence 433 4445555666677776666655432 445555666777777777777766665432
Q ss_pred HHHHHHHHHHHhc-------------C--ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH------
Q 039931 392 CTCSSLLVGLCKK-------------G--RLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWN------ 450 (783)
Q Consensus 392 ~~~~~li~~~~~~-------------g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------ 450 (783)
+...|+.|-.. | +.-.|-.+|++. | .....-+..|-+.|.+.+|+++-=
T Consensus 996 --fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g-----~~~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 996 --FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---G-----GYAHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred --HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---c-----hhhhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence 22222222111 1 112222222221 1 011223345666666666655421
Q ss_pred --HHHhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 039931 451 --ELNRR--KIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQ-K 525 (783)
Q Consensus 451 --~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~ 525 (783)
+++.. ....|+...+.-.+.++...++++|..++-...+ |..-+..| +..+..-..++-+.|.- +
T Consensus 1066 aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~K 1135 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTK 1135 (1416)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCc
Confidence 11111 2223556666666666677777777666654433 22222222 22222222222222221 1
Q ss_pred CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHH-----------------
Q 039931 526 GLLPDN----FTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVR----------------- 584 (783)
Q Consensus 526 ~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----------------- 584 (783)
.-.|+. .....+...|.+.|.+..|-+-|.+.-.+ ...++++.+.|+.++
T Consensus 1136 d~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImA 1206 (1416)
T KOG3617|consen 1136 DDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMA 1206 (1416)
T ss_pred CCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeeh
Confidence 122232 23445556666777766666555443211 011222333333222
Q ss_pred -----------HHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHCCCCCCHHH
Q 039931 585 -----------ADELVNKMYAGGLDPDITTYNIRMHGYCN---------------IRKMNQAAMMLDELVSAGIVPNTVT 638 (783)
Q Consensus 585 -----------A~~~~~~m~~~g~~p~~~~~~~li~~~~~---------------~g~~~~A~~~~~~m~~~g~~p~~~~ 638 (783)
--++++.+.. +..-...+..|.+-|.. .|-+++|...+.+...++ -...-
T Consensus 1207 ANyLQtlDWq~~pq~mK~I~t--FYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~ 1282 (1416)
T KOG3617|consen 1207 ANYLQTLDWQDNPQTMKDIET--FYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTG 1282 (1416)
T ss_pred hhhhhhcccccChHHHhhhHh--hhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHH
Confidence 1122211111 11111112222222211 233445555555554332 11122
Q ss_pred HHHHHHHHh------------hccHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 639 YNTLMNGVC------------CDILDRAIIIAAKLLKMAFVPNV----VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 639 ~~~li~~~~------------~~~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
++.|-.-+. +++..+.++-...|++.++.||. ..|..+|..+....++..|-+.++++....|.
T Consensus 1283 l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1283 LDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCc
Confidence 333332221 12344455555567776666654 45788888999999999999999999988877
Q ss_pred CCHHHH
Q 039931 703 FDETSY 708 (783)
Q Consensus 703 ~d~~~~ 708 (783)
-|..+|
T Consensus 1363 ~~~s~~ 1368 (1416)
T KOG3617|consen 1363 VDLSTF 1368 (1416)
T ss_pred cchhcc
Confidence 555554
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=5.6e-09 Score=110.23 Aligned_cols=174 Identities=15% Similarity=0.123 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----C-CCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-
Q 039931 139 ESAITILFKSLLRVGDYGSVWKLFRDMIHL-----G-PRPSNY-TFNALILGFCRNGCIRIGESLLHVMHKY-----MC- 205 (783)
Q Consensus 139 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~- 205 (783)
..++..|...|..+|+++.|..+++..++. | ..|.+. ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666999999999999999999999876 1 124444 3556888999999999999999998752 31
Q ss_pred CCC-HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 039931 206 VAD-FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNV-VVYNALLNGYVKARDIDQANMLYEEMRSR--- 280 (783)
Q Consensus 206 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 280 (783)
.|. ..+++.|..+|++.|++++|...|+.|.++++...... .|.+ ..++.++..++..+++++|..++....+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 122 35677788889999999999999999999999843321 2233 34666778888899999999998876542
Q ss_pred CCCCC----HhHHHHHHHHHHccCChhHHHHHHHHHH
Q 039931 281 DIAPD----AVTFNIIVSGHCKYGGMEDGDRLLRDLS 313 (783)
Q Consensus 281 g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 313 (783)
-+.++ ..+++.+...|.+.|++++|+++|++++
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 11222 2345555566666666666666665554
No 80
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2.2e-05 Score=85.83 Aligned_cols=340 Identities=15% Similarity=0.151 Sum_probs=207.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 039931 320 NCTLYDITVAGLCWAGRLDEAMEFFEDMFEKG--ISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSL 397 (783)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 397 (783)
|+.-.+..+.++...+-..+-+++++++.-.. +.-+...-|.||-...+ -+.....++.+++-..+ .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------H
Confidence 34444445556666666666666666655321 11111222333322222 23344444444443332 112 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 477 (783)
...+...+-+++|..+|++. ..+....+.|+.- .+.++.|.+.-++.. .+..|+.+..+-.+.|.+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 33344555567777777553 3345555555542 345566655544432 456789999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 478 DEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 478 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
.+|.+-|-+. .|+..|..+++...+.|.+++-.+.+...+++.-.|.+. +.||-+|++.+++.+-.+++
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 9998776443 467788899999999999999999888877776666554 46888999999888766554
Q ss_pred HHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 039931 558 YRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTV 637 (783)
Q Consensus 558 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 637 (783)
.-||..-...+.+-|...|.++.|.-++.... .|..|...+...|.++.|.+.-++. -+..
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence 24888888888888888888888887776544 3777888888888888887766653 2456
Q ss_pred HHHHHHHHHhhc-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 039931 638 TYNTLMNGVCCD-ILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYH 716 (783)
Q Consensus 638 ~~~~li~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~ 716 (783)
||..+-.+|..+ .+. +..|-..++..-..-..-++..|...|-++|-+.+++..+.+.-- .-..|.-|+-.|+
T Consensus 1251 tWK~VcfaCvd~~EFr-----lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA-HMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFR-----LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA-HMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHHhchhhhh-----HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH-HHHHHHHHHHHHH
Confidence 776665554321 111 122323333333444556677777777777777777666554432 3334555554454
Q ss_pred h
Q 039931 717 N 717 (783)
Q Consensus 717 ~ 717 (783)
+
T Consensus 1325 k 1325 (1666)
T KOG0985|consen 1325 K 1325 (1666)
T ss_pred h
Confidence 3
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=5.6e-09 Score=110.26 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhc-----CCC
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREV-----GI-MPSESA-ITILFKSLLRVGDYGSVWKLFRDMIHL-----GPR 171 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~~~~~~-~~~ll~~l~~~g~~~~A~~~~~~~~~~-----~~~ 171 (783)
..++..|...|...|+++.|..++...++. |. -|.+.+ .+.+...|...+++.+|..+|++++.. |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 357777999999999999999999988775 21 233333 455888899999999999999999863 321
Q ss_pred -C-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-CCCH-HhHHHHHHHHHhcCCcchHhhhccchHHHHHHH
Q 039931 172 -P-SNYTFNALILGFCRNGCIRIGESLLHVMHKY-----MC-VADF-FAYNILINAYCIRGQTSYALGKCGAGRMIFDMI 242 (783)
Q Consensus 172 -~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m 242 (783)
| -..+++.|...|++.|++++|...+++..+. |. .|.+ ..++.+...++..+++++|...++.+.+++...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 2347888999999999999999988876532 21 2333 246777788899999999988888777777744
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----C--CC-CHhHHHHHHHHHHccCChhHHHHHHHHHHhC
Q 039931 243 QEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRD----I--AP-DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVS 315 (783)
Q Consensus 243 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~--~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 315 (783)
+.....--.-+++.|...|.+.|++++|.++|+..+... - .+ ....++.+...|.+.+...+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 432211123679999999999999999999999987631 1 11 1334566666677777777777766654321
Q ss_pred ----CCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 316 ----GLL--PNCTLYDITVAGLCWAGRLDEAMEFFEDMF 348 (783)
Q Consensus 316 ----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (783)
|.. ....+|..|...|.+.|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111 112234444444444444444444444433
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=1.4e-06 Score=93.70 Aligned_cols=291 Identities=16% Similarity=0.101 Sum_probs=187.8
Q ss_pred HHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHH-HHHHH
Q 039931 217 NAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFN-IIVSG 295 (783)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~ 295 (783)
..+...|++++|+ +.++.-.. .+.............+.+.|+.++|..+|..+++++ |+...|. .+..+
T Consensus 12 ~il~e~g~~~~AL-------~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 12 SILEEAGDYEEAL-------EHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHCCCHHHHH-------HHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 4456778988884 45554332 222234556667788999999999999999999985 4555544 44444
Q ss_pred HHc-----cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 039931 296 HCK-----YGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRL-DEAMEFFEDMFEKGISPSIFAFNSIIAAYSRA 369 (783)
Q Consensus 296 ~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 369 (783)
..- ..+.+...++++++...-+. ......+.-.+.....+ ..+..++..+..+|+++ +|+.+-..|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~ 156 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDP 156 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcCh
Confidence 422 23567777888877665322 22221111111111122 34556677777777653 456666666655
Q ss_pred CCHHHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 039931 370 GLEENAFEAYKIMHQF----G----------LTPSS--CTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLL 433 (783)
Q Consensus 370 g~~~~A~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 433 (783)
.+.+-..+++...... + -.|+. .++..+...|...|++++|++.+++.++..+. .+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 5555555555554322 1 12333 24455666778889999999999988887433 577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH--------HHHHHHH
Q 039931 434 DGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFA--------YNSLIAG 505 (783)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--------~~~li~~ 505 (783)
..+-+.|++.+|.+.++........ |...=+..+..+.++|++++|.+++....+.+..|-... ......+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 8888999999999999888887655 667777777888889999999988888877654332211 1334566
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 039931 506 FCNRGKLNEALKLEREMRQ 524 (783)
Q Consensus 506 ~~~~g~~~~A~~l~~~m~~ 524 (783)
|.+.|++..|++.|..+.+
T Consensus 315 ~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7788888888777766554
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=5.6e-09 Score=99.10 Aligned_cols=239 Identities=11% Similarity=-0.052 Sum_probs=165.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFC 542 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 542 (783)
--+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||..|-..|.+..++..|+.++.+-.+.- +-|+.....+...+-
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence 3356777788888888888888777765 4666677777788888888888888888777662 224444455666777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039931 543 KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAM 622 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 622 (783)
..++.++|.++++...+.. +.++....++..+|.-.++++-|+.++.+++..|+ -+...|+.+.-+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 7788888888888877652 34666777777777778888888888888888774 466777777777888888888888
Q ss_pred HHHHHHHCCCCCCH---HHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 039931 623 MLDELVSAGIVPNT---VTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 623 ~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 698 (783)
.|++.+..--.|+. +.||.-.-+...|++.-|.+.|+-.+.. .|+. ..++.|.-.-.+.|++++|..++..+..
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 88877764444554 2343322122236777777777776663 3444 5677666555778888888888888888
Q ss_pred cCCCCCHHHH
Q 039931 699 ISFDFDETSY 708 (783)
Q Consensus 699 ~~~~~d~~~~ 708 (783)
..|..-++++
T Consensus 458 ~~P~m~E~~~ 467 (478)
T KOG1129|consen 458 VMPDMAEVTT 467 (478)
T ss_pred hCcccccccc
Confidence 7765333344
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=8.6e-06 Score=80.51 Aligned_cols=400 Identities=15% Similarity=0.068 Sum_probs=225.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG-DYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
+.+...-...+.+|...|+-++|..........- ...--|.++..+-+.| +..++.--+.+.+..-| ....
T Consensus 94 ~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~aL~- 165 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MALQ- 165 (564)
T ss_pred cccHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hHHH-
Confidence 4566677788889999999999998877654321 1222444554444443 33344444444444322 1111
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc--CCcchHhhhccchHHHHHHHHHCCCCCChHHHHHH
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIR--GQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNAL 257 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 257 (783)
.|.+..+.+ +..+...-..|.....+|+..+...-+.+++.+ ++...|.. ..++-+.. .-+.-|+.....+
T Consensus 166 ~i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~-----t~l~le~~-~~lr~NvhLl~~l 238 (564)
T KOG1174|consen 166 VIEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQ-----TFLMLHDN-TTLRCNEHLMMAL 238 (564)
T ss_pred HHHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhh-----HHHHHHhh-ccCCccHHHHHHH
Confidence 111111111 000111111233333344444444444444433 44333321 22222222 2345578888889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhH-HHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 039931 258 LNGYVKARDIDQANMLYEEMRSRDIAPDAVT-FNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGR 336 (783)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 336 (783)
.+.+...|+.++|...|+..... .|+..+ .....-.+.+.|+.+.-..+...+....-. ...-|-.-...+...++
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~ 315 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKK 315 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhh
Confidence 99999999999999999988765 344333 122222344567777766666665543211 22222223334456677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 039931 337 LDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCK 416 (783)
Q Consensus 337 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 416 (783)
++.|+.+-++.++.... +...|-.-...+...|+.++|.-.|+..+... +-+...|..|+.+|...|++.+|.-+-+.
T Consensus 316 ~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 88888888777765333 45555555567777888888888888877653 23567788888888888888888777666
Q ss_pred HHHcCCCCCHhhHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 039931 417 MIEKGFPINKVAFTVLL-DGYF-RIGDLIGAQSLWNELNRRKIFPD-AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFV 493 (783)
Q Consensus 417 ~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (783)
..+. ++.+..+.+.+. ..+. ....-++|.++++...+. .|+ ....+.+...+...|..++++.+++..... .
T Consensus 394 ~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~ 468 (564)
T KOG1174|consen 394 TIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--F 468 (564)
T ss_pred HHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--c
Confidence 6554 333455554442 2222 222335666666665554 233 234455556666677777777777776653 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 494 PNNFAYNSLIAGFCNRGKLNEALKLEREMRQK 525 (783)
Q Consensus 494 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 525 (783)
||....+.|.+.+...+.+.+|...|......
T Consensus 469 ~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 469 PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 66666777777777777777777777666655
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=3.5e-07 Score=98.11 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=92.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPN-NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGF 541 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 541 (783)
++..+...|...|++++|++..++.++. .|+ +..|..-...+-+.|++.+|.+.++........ |...-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHH
Confidence 3355567777888888888888888875 355 556777778888888888888888888877655 777777777888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChh------HH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 542 CKQGRMKPAIDAFMDMYRTGLVPDIV------TY--NTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 542 ~~~g~~~~A~~~~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.++|++++|.+++....+.+..|-.. .| .-...+|.+.|++..|++-|..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888877765444221 12 3334677788888888776665554
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=1.2e-07 Score=96.44 Aligned_cols=228 Identities=9% Similarity=-0.076 Sum_probs=154.8
Q ss_pred ccCChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 039931 473 KAGLVDEAYGVFLEMSRIG-FVPN--NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKP 549 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 549 (783)
..+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+..+. ++..|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 3456677777777777532 1222 345777777888889999999999988887544 67888888899999999999
Q ss_pred HHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 550 AIDAFMDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 550 A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
|...|++.++. .| +..+|..+...+...|++++|.+.+++..+. .|+..........+...++.++|...|++..
T Consensus 117 A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 117 AYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999998874 45 4677888888888899999999999998873 5644322222233445678999999997765
Q ss_pred HCCCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHH---cC--CCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 629 SAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLK---MA--FVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 629 ~~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~---~~--~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
.. ..|+...+ . +..+..++..++ +.+..+.+ .. +.| ...+|..+...+.+.|++++|+.+++++++.+|.
T Consensus 193 ~~-~~~~~~~~-~-~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 193 EK-LDKEQWGW-N-IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hh-CCccccHH-H-HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 42 23332222 1 222222433333 23333332 11 122 2357888999999999999999999999999974
Q ss_pred CCHHHHHH
Q 039931 703 FDETSYKI 710 (783)
Q Consensus 703 ~d~~~~~~ 710 (783)
|.+-+..
T Consensus 269 -~~~e~~~ 275 (296)
T PRK11189 269 -NFVEHRY 275 (296)
T ss_pred -hHHHHHH
Confidence 6655533
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.06 E-value=2.4e-06 Score=89.83 Aligned_cols=367 Identities=16% Similarity=0.095 Sum_probs=223.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 039931 255 NALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWA 334 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 334 (783)
..-|.+|....++++|+.+-+. .|.+.-...-.+.++++...|+-++|-++-.. +- ---+.|..|.+.
T Consensus 561 e~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s--------dg-d~laaiqlyika 628 (1636)
T KOG3616|consen 561 EEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELKES--------DG-DGLAAIQLYIKA 628 (1636)
T ss_pred HHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhccc--------cC-ccHHHHHHHHHc
Confidence 3456777777888888877543 23332233345556667777777776554211 11 112356778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039931 335 GRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLL 414 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 414 (783)
|....|...-..-.. ...|......+..++.+..-+++|-++|+++... ...+..|-+..-+.+|+++-
T Consensus 629 ~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgdaf~kaiela 697 (1636)
T KOG3616|consen 629 GKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDAFGKAIELA 697 (1636)
T ss_pred CCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHHHH
Confidence 888777665422111 1236666666777777777778888888776531 12334444444455555544
Q ss_pred HHHHHcCCCCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 039931 415 CKMIEKGFPINKVAF-TVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFV 493 (783)
Q Consensus 415 ~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (783)
+-. ++..++.. ..-...+...|+++.|...|-+... ....+.+-.....+.+|+.+++.+....
T Consensus 698 rfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk-- 762 (1636)
T KOG3616|consen 698 RFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK-- 762 (1636)
T ss_pred Hhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--
Confidence 322 22122211 2234455667777777766644322 1233455667788889999998887753
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 039931 494 PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLI 573 (783)
Q Consensus 494 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 573 (783)
.-.--|..+.+.|+..|+++.|.++|.+.- .++-.|.+|.+.|+++.|.++-.+... .......|.+-.
T Consensus 763 ~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiaka 831 (1636)
T KOG3616|consen 763 TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKA 831 (1636)
T ss_pred cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhH
Confidence 223346777888889999999988886532 345568889999999999888777653 233556676666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh-hcc
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTV--TYNTLMNGVC-CDI 650 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~-~~~ 650 (783)
.-+-++|++.+|.+++-..- .|+.. |..|-+.|..++.+++.++- .|+.. |..-+...+- .|+
T Consensus 832 edldehgkf~eaeqlyiti~----~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~ 897 (1636)
T KOG3616|consen 832 EDLDEHGKFAEAEQLYITIG----EPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGD 897 (1636)
T ss_pred HhHHhhcchhhhhheeEEcc----CchHH-----HHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccC
Confidence 67778888888888876654 35543 56788888888888887763 33432 2222222222 267
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 039931 651 LDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWG 693 (783)
Q Consensus 651 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 693 (783)
+..|..-|-+..+ |.+-+..|...+.|++|.++.
T Consensus 898 lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 898 LKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 7777665544332 555566667777777776543
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=9.9e-07 Score=90.31 Aligned_cols=395 Identities=16% Similarity=0.092 Sum_probs=245.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCh
Q 039931 329 AGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSS-CTCSSLLVGLCKKGRL 407 (783)
Q Consensus 329 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~ 407 (783)
+..+..|+++.|+.+|.+.+...+. |.+.|+.-..+|...|++++|++=-.+-++. .|+. ..|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4567889999999999999987665 8899999999999999999999877776664 5553 5688899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH---HHHHHHHHhC---CCCCCHHHHHHHHHHHHcc-------
Q 039931 408 PEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGA---QSLWNELNRR---KIFPDAVAFSAYINGLSKA------- 474 (783)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~~~~~---~~~p~~~~~~~li~~~~~~------- 474 (783)
++|+.-|.+-++.... |...++.+.+++.......+. -.++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 9999999998888544 788888888887211000000 0011111110 0000111222232222111
Q ss_pred ---CChHHHHHHHHHH-----HhCC-------CCCC----------------------HHHHHHHHHHHHhcCCHHHHHH
Q 039931 475 ---GLVDEAYGVFLEM-----SRIG-------FVPN----------------------NFAYNSLIAGFCNRGKLNEALK 517 (783)
Q Consensus 475 ---g~~~~A~~~~~~m-----~~~~-------~~p~----------------------~~~~~~li~~~~~~g~~~~A~~ 517 (783)
.++..|.-.+... ...| ..|. ..-+..+.++.-+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111222111110 0000 1110 1113445566666677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH-------HHHHHHHHHcCCHHHHHHHHH
Q 039931 518 LEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTY-------NTLIGGYCKALDIVRADELVN 590 (783)
Q Consensus 518 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~A~~~~~ 590 (783)
-+....... -+..-++....+|...|.+.++...-...++.|.. ...-| ..+..+|.+.++++.++..++
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777777654 25555666667777777777777766666655421 11122 223345666777777888877
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhhccHHHHHHHHHHHHHcCCCC
Q 039931 591 KMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT--VTYNTLMNGVCCDILDRAIIIAAKLLKMAFVP 668 (783)
Q Consensus 591 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p 668 (783)
+.+...-.|+.. .+....+++....+...- +.|+. ..-..-...+..+++..|++.+.++++.. |
T Consensus 323 kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P 389 (539)
T KOG0548|consen 323 KALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--P 389 (539)
T ss_pred HHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--C
Confidence 766533333222 223334444444444332 33433 22233333344589999999999999854 6
Q ss_pred -CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcchhhhHHHHh
Q 039931 669 -NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLMGCMTLN 745 (783)
Q Consensus 669 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (783)
|...|..-.-+|.+.|.+.+|+.-.++.++++|+ ....|..-+-++. .-++++.+.+.+.++++++|++.-..-+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~-~mk~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALR-AMKEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 4577888888899999999999999999999876 5667766655543 2578888889999999999877555433
No 89
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.99 E-value=7e-05 Score=76.95 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 039931 498 AYNSLIAGFCNRGKLNEALKLEREMRQKGLLP-DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGY 576 (783)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 576 (783)
+|...++...+..-+..|..+|.+..+.+..+ ++..+++++..|| .++.+-|.++|+--++. +..+..--...++-+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 34444554445555555555555555554444 4445555555444 34445555555544433 111222233444444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 577 CKALDIVRADELVNKMYAGGLDPD--ITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 577 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
...++-..+..+|++.+..++.|+ ...|..++.-=+.-|++..+.++-+++.
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455555555555555555444443 2445555555555555555555554443
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=0.00011 Score=79.02 Aligned_cols=305 Identities=14% Similarity=0.090 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CC--------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREV-GI--------MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN 174 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~--------~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 174 (783)
..+|+.+.+.|.+..+.+-|.-.+..|... |. .|+ ..-..+.-.-...|-.++|..+|.+-.+
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 469999999999999999888887766432 10 111 1111122223456888999999988765
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccc----hHHHHHHHHHCC----
Q 039931 175 YTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGA----GRMIFDMIQEEG---- 246 (783)
Q Consensus 175 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----a~~~~~~m~~~g---- 246 (783)
|..|=+.|-..|.+++|.++-+.--+..+ ..||.....-+-..++.+.|++.++. +.+++..+.+.-
T Consensus 829 --~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 829 --YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred --HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 33455667889999999988775433222 23565566666677888888887764 345555444320
Q ss_pred ----CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHH
Q 039931 247 ----LSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCT 322 (783)
Q Consensus 247 ----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 322 (783)
-..|...|.--...+-..|+.+.|+.+|.... -|-++++..|-.|+.++|-++-++- -|..
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~es------gd~A 968 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEES------GDKA 968 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhc------ccHH
Confidence 01244445555555566799999999998765 3677888899999999999987763 3555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhCCC
Q 039931 323 LYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAG---------------LEENAFEAYKIMHQFGL 387 (783)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~~~ 387 (783)
....|.+.|-..|++.+|..+|.+... +...|+.|-.++ +.-.|-.+|++. |.
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~ 1036 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG 1036 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch
Confidence 666788999999999999999987654 333343332222 122223333322 11
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHH--------HHHHc--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 388 TPSSCTCSSLLVGLCKKGRLPEAWDLLC--------KMIEK--GFPINKVAFTVLLDGYFRIGDLIGAQSLWNELN 453 (783)
Q Consensus 388 ~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (783)
. ....+..|-+.|.+.+|+++-- +++.. ....|+...+.-.+.++...++++|..++-...
T Consensus 1037 ~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1037 Y-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred h-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1 1223445677777777766421 12222 233466677777777777778888777765443
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=4.8e-05 Score=80.40 Aligned_cols=310 Identities=16% Similarity=0.119 Sum_probs=150.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 039931 256 ALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAG 335 (783)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 335 (783)
+-|..|.+.|.+..|.+....=.. ...|......+..++.+..-+++|-.+|+++.. +...+..|-+-.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHccc
Confidence 446777777777776665422111 123555555555555555555555555555432 111122222222
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039931 336 RLDEAMEFFEDMFEKGISPSIFAF-NSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLL 414 (783)
Q Consensus 336 ~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 414 (783)
-+.+|.++-+-.. +..+++. ......+.+.|+++.|+..|-+... ....+.+.....++.+|+.++
T Consensus 689 af~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 689 AFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred HHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHH
Confidence 2333433322111 1111111 1222334445555555555443321 122344555566667777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 039931 415 CKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVP 494 (783)
Q Consensus 415 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 494 (783)
+.+..+.. -...|..+.+.|...|+++.|.++|.+.. .++-.|..|.+.|+++.|.++-.+... ...
T Consensus 756 dniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~ 822 (1636)
T KOG3616|consen 756 DNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEA 822 (1636)
T ss_pred HHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chh
Confidence 66665532 23345566666777777777776665432 234456667777777777666555432 223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 039931 495 NNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIG 574 (783)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 574 (783)
....|.+-..-+-+.|++.+|.+++-.+. .|+. .|.+|-+.|..+..+++..+-.- ..-..|...+..
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAK 890 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHH
Confidence 34445544555556666666666553322 2232 24556666666665555544221 011234444555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 575 GYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMM 623 (783)
Q Consensus 575 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 623 (783)
-|...|++..|.+-|-+.-+ |.+-++.|-..+.|++|.++
T Consensus 891 e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 55556666666555544332 33444445555555555444
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=9.3e-06 Score=78.26 Aligned_cols=207 Identities=11% Similarity=0.087 Sum_probs=129.8
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 039931 468 INGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRM 547 (783)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 547 (783)
+..+...|+...|+.....+++.. +-|...|..-..+|...|++..|+.=++...+.... +..++--+-..+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhH
Confidence 334556788888888888887753 456666777777888888888888777766665333 555555666677788888
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 548 KPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 548 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
+.++...++.++ +.||....-.. | .++.+..+.++.|.+ ....+.|.++++-.+..
T Consensus 240 ~~sL~~iRECLK--ldpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~v 295 (504)
T KOG0624|consen 240 ENSLKEIRECLK--LDPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKV 295 (504)
T ss_pred HHHHHHHHHHHc--cCcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHH
Confidence 888888888887 46765433221 1 112222333333322 23456667777777776
Q ss_pred HHCCCCCCHHHHHHH--HHHHhh--ccHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 628 VSAGIVPNTVTYNTL--MNGVCC--DILDRAIIIAAKLLKMAFVPN-VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 628 ~~~g~~p~~~~~~~l--i~~~~~--~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
++....-..++|+.. +..|.+ +.+.+|++...+++. +.|| +.++-.-..+|.-..++++|+.-++++.+.++.
T Consensus 296 lk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 296 LKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 654322222333332 111112 577788888888777 5565 466666666777777888888888888887765
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=5.8e-06 Score=84.85 Aligned_cols=235 Identities=14% Similarity=0.021 Sum_probs=127.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------H
Q 039931 325 DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSS-------L 397 (783)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-------l 397 (783)
..+.+..-+..+++.|.+-+....+.. -++.-++....+|...|.+.+.........+.|-. ...-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 445555666667777777777666653 24445555666677777666666666555554422 2222222 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 477 (783)
..+|.+.++++.++..|.+.......|+. ..+....+++.+..+...-.++.. ..-...-.+.+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 23445556677777777766554333222 223333444444444333322211 11112224556667777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 478 DEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 478 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
..|+..+.++++.. +-|...|..-.-+|.+.|.+..|+.=-+.-++..+ +....|..=..++....++++|.+.|.+.
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777654 44566677777777777777777666655555522 13444544455555566777777777777
Q ss_pred HHcCCCCChhHHHHHHHHH
Q 039931 558 YRTGLVPDIVTYNTLIGGY 576 (783)
Q Consensus 558 ~~~g~~p~~~~~~~li~~~ 576 (783)
++. .|+..-+..-+.-|
T Consensus 453 le~--dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 453 LEL--DPSNAEAIDGYRRC 469 (539)
T ss_pred Hhc--CchhHHHHHHHHHH
Confidence 664 35444433333333
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.94 E-value=9.7e-07 Score=89.76 Aligned_cols=153 Identities=12% Similarity=-0.034 Sum_probs=87.5
Q ss_pred HhcCChHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChh
Q 039931 115 LRVEMSAEVMEILYRMREVGI-MP--SESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIR 191 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~~~g~-~~--~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 191 (783)
...+..+.++.-+.+++.... .| ....|..+...+.+.|++++|...|++.++..| .+...|+.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHH
Confidence 334566777777777775421 11 134466666677777777777777777777655 45667777777777777777
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHH
Q 039931 192 IGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQAN 271 (783)
Q Consensus 192 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 271 (783)
+|...|++..+.. +.+..++..+...+...|++++| .+.|+...+.. |+..........+...+++++|.
T Consensus 116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA-------~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~ 185 (296)
T PRK11189 116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELA-------QDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAK 185 (296)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH-------HHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHH
Confidence 7777777776543 23345555566666666666666 34555544432 22211111111222345566666
Q ss_pred HHHHHHH
Q 039931 272 MLYEEMR 278 (783)
Q Consensus 272 ~~~~~m~ 278 (783)
+.|++..
T Consensus 186 ~~l~~~~ 192 (296)
T PRK11189 186 ENLKQRY 192 (296)
T ss_pred HHHHHHH
Confidence 6665443
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=1.1e-06 Score=80.36 Aligned_cols=194 Identities=15% Similarity=0.020 Sum_probs=91.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 039931 397 LLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGL 476 (783)
Q Consensus 397 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 476 (783)
|.-+|...|+...|..-+++.++..+. +..++..+...|-+.|+.+.|.+.|++..+..+. +....|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 344455555555555555555554322 3444555555555555555555555555444332 33444444555555555
Q ss_pred hHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 039931 477 VDEAYGVFLEMSRIGFV-PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFM 555 (783)
Q Consensus 477 ~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 555 (783)
+++|...|++....-.- --..||..+.-+..+.|+.+.|...|++..+.... .+.+.-.+.....+.|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 55555555554442100 11223444444444555555555555555544322 23334444444555555555555555
Q ss_pred HHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 556 DMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 556 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.....+. ++..+....|..--..|+.+.+.++=.++.+
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5444432 4444444444444445555555444444443
No 96
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.92 E-value=0.00021 Score=78.04 Aligned_cols=223 Identities=13% Similarity=0.107 Sum_probs=110.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 039931 117 VEMSAEVMEILYRMREVGIMPSESAITILFKS--LLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGE 194 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~--l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 194 (783)
.+++..|+...+++.+.. |+. .|..++.+ +.|.|+.++|..+++.....++ .|..|...+-.+|...|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHH
Confidence 345556666666655542 222 22223333 3455666666655555544433 25556666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--------
Q 039931 195 SLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARD-------- 266 (783)
Q Consensus 195 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------- 266 (783)
.++++..+. -|+..-...+-.+|.+.+.+.+-. +.|.+++...++ +...+=++|+.+.+.-.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ---kaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ---KAALQLYKNFPK-----RAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCc-----ccchHHHHHHHHHHhccCCcccccc
Confidence 666666544 244555555555555555554332 122333332222 34444444444443211
Q ss_pred --hhHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHccCChhHHHHHHH-HHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 039931 267 --IDQANMLYEEMRSRD-IAPDAVTFNIIVSGHCKYGGMEDGDRLLR-DLSVSGLLPNCTLYDITVAGLCWAGRLDEAME 342 (783)
Q Consensus 267 --~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 342 (783)
..-|.+.++.+.+.+ ---+..-...-...+...|..++|.+++. ...+.-...+...-+.-+..+...+++.+-.+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 123445555555543 11111222222333445666777777763 33333333344444555666667777777777
Q ss_pred HHHHHHHCCCC
Q 039931 343 FFEDMFEKGIS 353 (783)
Q Consensus 343 ~~~~m~~~g~~ 353 (783)
+-.++...|..
T Consensus 248 l~~~Ll~k~~D 258 (932)
T KOG2053|consen 248 LSSRLLEKGND 258 (932)
T ss_pred HHHHHHHhCCc
Confidence 77777766443
No 97
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.90 E-value=1.9e-06 Score=78.84 Aligned_cols=197 Identities=15% Similarity=0.042 Sum_probs=119.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039931 325 DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK 404 (783)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 404 (783)
..|.-+|...|+...|..-+++.++..+. +..+|..+...|.+.|..+.|.+.|++....... +-.+.|.....+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 34455677777777777777777766444 5666777777777777777777777777665422 445566666666777
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 039931 405 GRLPEAWDLLCKMIEKG-FPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGV 483 (783)
Q Consensus 405 g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 483 (783)
|++++|...|++....- ...-..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.....+.|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 77777777777666542 1222345555665666666666666666666665433 334455555566666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 484 FLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK 525 (783)
Q Consensus 484 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 525 (783)
++.....+. ++..+.-..|..-...|+.+.+.+.=.++...
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 666655543 55555555555555666666555554444443
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.85 E-value=1.9e-05 Score=76.12 Aligned_cols=319 Identities=15% Similarity=0.068 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHH
Q 039931 392 CTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFS-AYING 470 (783)
Q Consensus 392 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~li~~ 470 (783)
.-..-+...+...|++.+|+..|...++.++. +-.++-.-...|...|+...|+.-+...++. +||-..-. .-...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 33444555666666666666666666554211 2222222344566666666666666666554 34432211 11234
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 039931 471 LSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPA 550 (783)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 550 (783)
+.+.|.+++|..=|+..++.. |+.-+ ...++.+....++-..+ ...+..+.-.|+...|
T Consensus 116 llK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQNA 174 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchhhH
Confidence 456666666666666666542 32211 11111111111111111 1223334557888888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 551 IDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 551 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
+.+...+++.. +-|...|..-..+|...|++..|+.=+....+.. ..+..+..-+-..+...|+.+.++...++.++
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK- 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK- 251 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-
Confidence 88888888742 3478888888888888888888887777766532 33456666666777888888888888888776
Q ss_pred CCCCCHHH----HHHHHH---HHh-------hccHHHHHHHHHHHHHcCCCCCH--H---HHHHHHHHHHhcCChhhHHH
Q 039931 631 GIVPNTVT----YNTLMN---GVC-------CDILDRAIIIAAKLLKMAFVPNV--V---TTNVLLSHFCKQGMPEKTLL 691 (783)
Q Consensus 631 g~~p~~~~----~~~li~---~~~-------~~~~~~A~~~~~~~~~~~~~p~~--~---~~~~ll~~~~~~g~~~~A~~ 691 (783)
+.||... |-.+-. .+- .+.+.++++..++.++ ..|.. + .+..+-..+.+.|++-+|++
T Consensus 252 -ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk--~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 252 -LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK--NEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred -cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--cCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 4666532 221111 110 1344555555666655 33542 2 23445556778899999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcchhhhHH
Q 039931 692 WGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLMGCM 742 (783)
Q Consensus 692 ~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (783)
...++++++|+ |+.++.--+.+|.- .+.++.+-.-++++.+.++++-.+
T Consensus 329 qC~evL~~d~~-dv~~l~dRAeA~l~-dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 329 QCKEVLDIDPD-DVQVLCDRAEAYLG-DEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHhcCch-HHHHHHHHHHHHhh-hHHHHHHHHHHHHHHhcCcccHHH
Confidence 99999999987 78888888888743 577777777778888887766543
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.85 E-value=1.5e-05 Score=84.24 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC-CcH--HHHHHHHH
Q 039931 253 VYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLL-PNC--TLYDITVA 329 (783)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~li~ 329 (783)
....+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++....... ++. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3344556667777778888887777776422 4455666666777777777777777776654321 221 23445666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 039931 330 GLCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~ 349 (783)
.+...|++++|..++++...
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhc
Confidence 67777777777777777654
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=1.7e-05 Score=83.95 Aligned_cols=202 Identities=11% Similarity=-0.043 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGI-MPSES-AITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~-~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
..+..+..+...+...|+++.+.+.+.+..+... .++.. ........+...|++++|.+.+++.++..| .+...+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH
Confidence 3445667777777777888887777766555432 11221 122233445677888999998888888755 34444432
Q ss_pred HHHHHHh----cCChhhHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHH
Q 039931 180 LILGFCR----NGCIRIGESLLHVMHKYMCVAD-FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVY 254 (783)
Q Consensus 180 l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~ 254 (783)
...+.. .+..+.+.+.++.. ....|+ ......+...+...|++++| ...+++..+... .+...+
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A-------~~~~~~al~~~p-~~~~~~ 151 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRA-------EEAARRALELNP-DDAWAV 151 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHhhCC-CCcHHH
Confidence 222222 34444555544441 111233 34445566677788888888 456666665442 256677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--hHHHHHHHHHHccCChhHHHHHHHHHHhC
Q 039931 255 NALLNGYVKARDIDQANMLYEEMRSRDI-APDA--VTFNIIVSGHCKYGGMEDGDRLLRDLSVS 315 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 315 (783)
..+...+...|++++|...+++...... .|+. ..|..+...+...|+.++|..++++....
T Consensus 152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 8888888889999999999888876532 1222 23556777888889999999999887544
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=5e-06 Score=78.48 Aligned_cols=315 Identities=13% Similarity=0.098 Sum_probs=191.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (783)
+++.+..+.+..++++|++++..-.++. +.+......|...|-+..++..|-..|++....-|+...+-+- -...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY-~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY-QAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH-HHHHHHH
Confidence 5566666677788899999988888775 3366677788888888889999999999887765433333222 2345667
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH--HhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 039931 187 NGCIRIGESLLHVMHKYMCVADFFAYNILINAY--CIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKA 264 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 264 (783)
.+.+..|+++...|... ++...-..-+.+- -..+++..+ +.+.++.+..| +..+.+...-...+.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~-------rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGS-------RSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcch-------HHHHHhccCCC---ccchhccchheeecc
Confidence 78888898888887642 2222222222222 233555544 66777776432 445555555666788
Q ss_pred CChhHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHH----HHHHHHHHhcCCHHH
Q 039931 265 RDIDQANMLYEEMRSR-DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLY----DITVAGLCWAGRLDE 339 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~ 339 (783)
|++++|++-|+...+- |.. ....|+..+. ..+.|+.+.|.+...+++++|+...+..- +-.++ ...+..
T Consensus 158 gqyEaAvqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgN 231 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGN 231 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccc
Confidence 9999999999888775 444 4566766654 45678888888888888877754221110 00000 000000
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 340 AMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF-GLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMI 418 (783)
Q Consensus 340 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 418 (783)
...+.... =+..+|.-...+.+.|+++.|.+.+-.|.-+ ....|++|...+.-. -..+++.+..+-+.-+.
T Consensus 232 t~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 232 TLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLL 303 (459)
T ss_pred hHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHH
Confidence 01111100 1223555556667788888888887777533 234466665544322 22445556666666666
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 419 EKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNE 451 (783)
Q Consensus 419 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (783)
+..+ -...|+..++-.||+..-++-|-+++-+
T Consensus 304 ~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 304 QQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6644 3456777778888888777777777654
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.8e-06 Score=81.39 Aligned_cols=194 Identities=10% Similarity=0.030 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHH-HHHHHHH
Q 039931 359 FNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFT-VLLDGYF 437 (783)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~ 437 (783)
+.+.+..+.+..+++.|++++..-.+... .+....+.+..+|....++..|-..++++...-+ ...-|. --...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P--~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP--ELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHHH
Confidence 44455555566666666666665555431 1455555566666666666666666666554421 222221 1234445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039931 438 RIGDLIGAQSLWNELNRRKIFPDAVAFSAYI--NGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEA 515 (783)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 515 (783)
+.+.+..|+++...|... |+...-..-+ ......+++..+..+.++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 556666666666655542 1111111111 11234455555555555544321 222222222233456666666
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039931 516 LKLEREMRQK-GLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLV 563 (783)
Q Consensus 516 ~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 563 (783)
.+-|+...+- |.. ....||.-+ +..+.|+++.|++...++++.|++
T Consensus 164 vqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 6666665543 333 333444333 333456666666666666666553
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=0.0001 Score=88.68 Aligned_cols=335 Identities=13% Similarity=-0.023 Sum_probs=193.3
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHH
Q 039931 296 HCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGI------SPS--IFAFNSIIAAYS 367 (783)
Q Consensus 296 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~--~~~~~~li~~~~ 367 (783)
....|+.+.+...++.+.......+..........+...|++++|...+......-. .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344567776666666542211111222223334445677888888888877654210 111 112222334556
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHh
Q 039931 368 RAGLEENAFEAYKIMHQFGLTPSS----CTCSSLLVGLCKKGRLPEAWDLLCKMIEK----GFP-INKVAFTVLLDGYFR 438 (783)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~ 438 (783)
..|++++|...++.....-...+. ...+.+...+...|++++|...+++.... |.. ....+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788888888888887653111121 23345555667788888888888877643 111 112344556667788
Q ss_pred cCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHH
Q 039931 439 IGDLIGAQSLWNELNRR----KIF--P-DAVAFSAYINGLSKAGLVDEAYGVFLEMSRIG--FVP--NNFAYNSLIAGFC 507 (783)
Q Consensus 439 ~g~~~~A~~~~~~~~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p--~~~~~~~li~~~~ 507 (783)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888888776442 211 1 12334445556677788888888887765421 112 1233444556677
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHH
Q 039931 508 NRGKLNEALKLEREMRQKG--LLPDNF--TF--NIIINGFCKQGRMKPAIDAFMDMYRTGLVPD---IVTYNTLIGGYCK 578 (783)
Q Consensus 508 ~~g~~~~A~~l~~~m~~~~--~~p~~~--~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~ 578 (783)
..|+++.|...+.+..... ...... .. ...+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8888888888887764421 111110 00 1112344557888888888766543211111 1113456667778
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 579 ALDIVRADELVNKMYAG----GLDPD-ITTYNIRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 579 ~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
.|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+.++.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888877652 32222 245666677888888888888888888763
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.69 E-value=5.2e-07 Score=90.24 Aligned_cols=80 Identities=16% Similarity=0.063 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 039931 547 MKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKM-NQAAMMLD 625 (783)
Q Consensus 547 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 625 (783)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.. +-|..+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 23344444444444444444444444444443321 11233333344444444444 33334444
Q ss_pred HHH
Q 039931 626 ELV 628 (783)
Q Consensus 626 ~m~ 628 (783)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 444
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=2.2e-08 Score=63.29 Aligned_cols=34 Identities=47% Similarity=0.896 Sum_probs=28.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 245 EGLSPNVVVYNALLNGYVKARDIDQANMLYEEMR 278 (783)
Q Consensus 245 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 278 (783)
+|+.||++|||+||++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888873
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=0.00014 Score=87.56 Aligned_cols=335 Identities=10% Similarity=-0.013 Sum_probs=193.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCC------CCc--HHHHHHHHHHHH
Q 039931 261 YVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGL------LPN--CTLYDITVAGLC 332 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~li~~~~ 332 (783)
....|+++.+...++.+.......+..........+...|+++++...+......-. .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445566666666665542211111222223333444566777777777776643210 111 112222333455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHh
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPS----IFAFNSIIAAYSRAGLEENAFEAYKIMHQF----GL-TPSSCTCSSLLVGLCK 403 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~ 403 (783)
..|++++|...+++....-...+ ....+.+...+...|++++|...+++.... |. .+...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 77888888888887765311112 134455666677788888888887776532 11 1112344555666778
Q ss_pred cCChhHHHHHHHHHHHc----CCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 039931 404 KGRLPEAWDLLCKMIEK----GFP---INKVAFTVLLDGYFRIGDLIGAQSLWNELNRR----KIFPDAVAFSAYINGLS 472 (783)
Q Consensus 404 ~g~~~~a~~~~~~~~~~----~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li~~~~ 472 (783)
.|++++|...+++.... +.. .....+..+...+...|++++|...+.+.... +.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888877766542 211 12334555666677778888888888776442 11112334445566777
Q ss_pred ccCChHHHHHHHHHHHhC----CCCCCHHH-H-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 039931 473 KAGLVDEAYGVFLEMSRI----GFVPNNFA-Y-NSLIAGFCNRGKLNEALKLEREMRQKGLLPD---NFTFNIIINGFCK 543 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~----~~~p~~~~-~-~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~ 543 (783)
..|+.++|.+.+.+.... +....... . ...+..+...|+.+.|..++........... ...+..+...+..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 888888888888776432 11111101 1 1122344557888888888776554221111 1113456677888
Q ss_pred cCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 039931 544 QGRMKPAIDAFMDMYRT----GLVPD-IVTYNTLIGGYCKALDIVRADELVNKMYAG 595 (783)
Q Consensus 544 ~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 595 (783)
.|+.++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999998888887643 32222 345667777888899999999999888874
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.64 E-value=0.00098 Score=68.85 Aligned_cols=452 Identities=11% Similarity=0.076 Sum_probs=245.6
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 039931 206 VADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPD 285 (783)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 285 (783)
+-|+.+|+.||.-+... ..+++ ++.++++...- +-....|..-|..-.+.++++....+|.+-+..- .+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~-------R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKV-------RETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHH-------HHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 56788888888876655 66666 67788776532 2245678888999999999999999998877652 35
Q ss_pred HhHHHHHHHHHHc-cCChhH----HHHHHHHHH-hCCCCC-cHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHH
Q 039931 286 AVTFNIIVSGHCK-YGGMED----GDRLLRDLS-VSGLLP-NCTLYDITVAG---------LCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 286 ~~t~~~ll~~~~~-~g~~~~----A~~~~~~~~-~~~~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~ 349 (783)
...|...|+.-.+ .|+... ..+.|+-.. +.|+.+ +-..|+..+.. |....+++...+++++++.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6667666664333 233333 223333333 334332 22334444432 3344456667777777775
Q ss_pred CCCCC------CHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChhH--HHH
Q 039931 350 KGISP------SIFAFNSIIAAYS-------RAGLEENAFEAYKIMHQ--FGLTPSSCTCSSLLVGLCKKGRLPE--AWD 412 (783)
Q Consensus 350 ~g~~p------~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li~~~~~~g~~~~--a~~ 412 (783)
.-+.- |-..|..=|+... +...+..|.++++++.. .|+..+..+ .-..|-.++ ..+
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~ 238 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVE 238 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHH
Confidence 32210 1112221121111 12234555555555532 122111111 000111111 112
Q ss_pred HHHHHHH----cCCC-CCH--------hhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 039931 413 LLCKMIE----KGFP-INK--------VAFTVLLDGYFR-IGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVD 478 (783)
Q Consensus 413 ~~~~~~~----~~~~-~~~--------~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 478 (783)
++...++ .+.. .+. .+|...+..+.- -.-|-++...+....+ .+....+.=......+
T Consensus 239 ~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~--------l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 239 LWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISD--------LLTEKGDVPDAKSLTD 310 (656)
T ss_pred HHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhH--------HHHHhcccccchhhHH
Confidence 2222221 1111 000 011111111000 0001111111111100 0000000000111245
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 039931 479 EAYGVFLEMSRIGFVPNNFAYNSLIAGFCNR---GKLNEALKLEREMRQK-GLLPDNFTFNIIINGFCKQGRMKPAIDAF 554 (783)
Q Consensus 479 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 554 (783)
++..+++.....-..-+..+|..+.+---.. +..+.....++++... ...| ..+|..+++.-.+..-++.|..+|
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHH
Confidence 6777777766543334555665554432211 1355666666666654 2343 346778888888889999999999
Q ss_pred HHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039931 555 MDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRKMNQAAMMLDELVSAGI 632 (783)
Q Consensus 555 ~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 632 (783)
.++.+.+..+ ++..+++++.-|| .++.+-|.++|+--++. .+|. .--...++-+.+.++-..|..+|++.+..++
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999988777 7888899998887 46889999999987763 3544 4446778889999999999999999998877
Q ss_pred CCCH--HHHHHHHHHHhh-ccHHHHHHHHHHHHHc-C--CCCCHHHHHHHHHHHHhcCChh
Q 039931 633 VPNT--VTYNTLMNGVCC-DILDRAIIIAAKLLKM-A--FVPNVVTTNVLLSHFCKQGMPE 687 (783)
Q Consensus 633 ~p~~--~~~~~li~~~~~-~~~~~A~~~~~~~~~~-~--~~p~~~~~~~ll~~~~~~g~~~ 687 (783)
.||. ..|..+|+--.. |++.-..++-+++... + ..|.-.+-..+++-|.-.+++.
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 7775 678888875444 8888888888775431 1 2222222334455555455443
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.63 E-value=4.4e-06 Score=83.64 Aligned_cols=149 Identities=16% Similarity=0.095 Sum_probs=67.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcC
Q 039931 435 GYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFC----NRG 510 (783)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g 510 (783)
.+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.. .|. +...+..++. ..+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCch
Confidence 344445555555544321 133444444555555555555555555555431 222 2222222222 122
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCH-HHHHHHH
Q 039931 511 KLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDI-VRADELV 589 (783)
Q Consensus 511 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~ 589 (783)
.+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.+++.+..+.+ +-+..+...++......|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 455555555555443 33455555555555555555555555555554432 12344444444444445554 4444555
Q ss_pred HHHHH
Q 039931 590 NKMYA 594 (783)
Q Consensus 590 ~~m~~ 594 (783)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 55544
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=9e-06 Score=84.22 Aligned_cols=255 Identities=15% Similarity=0.078 Sum_probs=132.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 039931 401 LCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEA 480 (783)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 480 (783)
+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.+..+..+. +......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 34555566666666655555433 4555555555555555555555555555554433 444555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-H
Q 039931 481 YGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMY-R 559 (783)
Q Consensus 481 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 559 (783)
++.++..+... |. |..+..+ ...++...- +-.++... +....++|-++. .
T Consensus 373 l~~L~~Wi~~~--p~---y~~l~~a-~~~~~~~~~----------~s~~~~~~-------------l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 373 LKMLDKWIRNK--PK---YVHLVSA-GENEDFENT----------KSFLDSSH-------------LAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHHHHHhC--cc---chhcccc-CccccccCC----------cCCCCHHH-------------HHHHHHHHHHHHHh
Confidence 55555555432 11 1111000 000000000 00111111 122233333332 3
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 039931 560 TGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-- 636 (783)
Q Consensus 560 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 636 (783)
.+..+|......|.-.|--.|++++|.+.|+.++. +.| |..+||-|...++...+..+|+..|.+.++ ++|.-
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR 499 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVR 499 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeee
Confidence 33335666666666667777777777777777776 455 456677777777777777777777777765 45654
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH---cCC------CCCHHHHHHHHHHHHhcCChhhHH
Q 039931 637 VTYNTLMNGVCCDILDRAIIIAAKLLK---MAF------VPNVVTTNVLLSHFCKQGMPEKTL 690 (783)
Q Consensus 637 ~~~~~li~~~~~~~~~~A~~~~~~~~~---~~~------~p~~~~~~~ll~~~~~~g~~~~A~ 690 (783)
+-||.-|...-.|.+++|.+.|-+++. ++- .++..+|.+|=.++.-.++.|-+.
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 345555543334677777776665432 211 122345666655555555555443
No 110
>PLN02789 farnesyltranstransferase
Probab=98.58 E-value=5e-05 Score=77.15 Aligned_cols=215 Identities=10% Similarity=0.016 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG-DYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
+++.+-..+...++.++|+.+.+++++.+ +.+..+|+.....+.+.| ++++++..++++++.++ .+..+|+...-.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence 44444444555556666666666666554 233344554444444444 34555555555555543 3333444333333
Q ss_pred HhcCCh--hhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 039931 185 CRNGCI--RIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYV 262 (783)
Q Consensus 185 ~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 262 (783)
.+.|.. ++++ ...+.+.+...+ |..+|+...-.+.
T Consensus 117 ~~l~~~~~~~el------------------------------------------~~~~kal~~dpk-Ny~AW~~R~w~l~ 153 (320)
T PLN02789 117 EKLGPDAANKEL------------------------------------------EFTRKILSLDAK-NYHAWSHRQWVLR 153 (320)
T ss_pred HHcCchhhHHHH------------------------------------------HHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 333321 2233 344444443322 5566666666666
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc---CCh----hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-
Q 039931 263 KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKY---GGM----EDGDRLLRDLSVSGLLPNCTLYDITVAGLCWA- 334 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 334 (783)
+.|+++++++.++++++.++. |...|+.....+.+. |.. +++.+...+++...+ -|...|+-+...+...
T Consensus 154 ~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~ 231 (320)
T PLN02789 154 TLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDK 231 (320)
T ss_pred HhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCC
Confidence 666666666666666665544 444555444333332 111 233333434443322 2344444444444441
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 039931 335 ---GRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR 368 (783)
Q Consensus 335 ---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 368 (783)
+...+|...+.+....++. +......|++.|+.
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 232 EALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 2334455555555543322 45555556666554
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=8.8e-08 Score=60.57 Aligned_cols=32 Identities=38% Similarity=0.880 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 596 GLDPDITTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 596 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 112
>PLN02789 farnesyltranstransferase
Probab=98.55 E-value=7.1e-05 Score=76.05 Aligned_cols=215 Identities=11% Similarity=0.042 Sum_probs=131.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC-ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 039931 253 VYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYG-GMEDGDRLLRDLSVSGLLPNCTLYDITVAGL 331 (783)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 331 (783)
++..+-..+...++.++|+.+++++++.... +..+|+.--.++...| ++++++..++++.+.+.+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 3444445566678889999999998886332 3345555555555666 567888888887776543 334455444444
Q ss_pred HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 039931 332 CWAGR--LDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK---GR 406 (783)
Q Consensus 332 ~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~ 406 (783)
.+.|+ .+++..+++++.+.... |..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 45554 25677777777776555 7777887777777778888888888888776644 555665555444443 22
Q ss_pred h----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 039931 407 L----PEAWDLLCKMIEKGFPINKVAFTVLLDGYFRI----GDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSK 473 (783)
Q Consensus 407 ~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 473 (783)
. ++.++...+++...+. |...|+-+...+... +...+|.+.+.+..+.++. +......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 2 3455555566655433 666666666666552 2334466666555543322 45555555555553
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=1.2e-05 Score=83.35 Aligned_cols=230 Identities=16% Similarity=0.100 Sum_probs=136.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEA 410 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 410 (783)
+.+.|++.+|.-.|+..+...+. +...|--|......+++-..|+..+++..+... -|......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHH
Confidence 55667777777777776666544 566666666666666666666666666666532 2445555555566666666666
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-h
Q 039931 411 WDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMS-R 489 (783)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 489 (783)
...++..+...++ ..|. ... ...++.. +. ..+.....+....++|-++. .
T Consensus 373 l~~L~~Wi~~~p~---y~~l--~~a-~~~~~~~---------------~~--------~s~~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK---YVHL--VSA-GENEDFE---------------NT--------KSFLDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHHHHHhCcc---chhc--ccc-Ccccccc---------------CC--------cCCCCHHHHHHHHHHHHHHHHh
Confidence 6666665554322 0000 000 0000000 00 01111122233444444443 3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhH
Q 039931 490 IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPD-IVT 568 (783)
Q Consensus 490 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~ 568 (783)
.+..+|+.+...|.-.|--.|++++|...|+..+...+. |..+||.|...++...+.++|+..|.++++ ++|+ +.+
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~ 500 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRV 500 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeee
Confidence 333456666666666677777888888888877776544 677788888888877788888888888777 4665 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+..|.-.|...|.+++|.+.|-..+.
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 55666667777888888777766554
No 114
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.47 E-value=0.0045 Score=68.07 Aligned_cols=495 Identities=14% Similarity=0.094 Sum_probs=258.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhH
Q 039931 114 YLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIG 193 (783)
Q Consensus 114 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 193 (783)
..|.|+.++|..+++.....+. .|..|...+-..|.+.|+.++|..+|++..... |+..-...+..+|.+.+.+.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999988888776653 478888899999999999999999999998865 4577777778888888887665
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CcchHhh--hccchHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCChhH
Q 039931 194 ESLLHVMHKYMCVADFFAYNILINAYCIRG-QTSYALG--KCGAGRMIFDMIQEEG-LSPNVVVYNALLNGYVKARDIDQ 269 (783)
Q Consensus 194 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~--~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~ 269 (783)
.+.--++-+. .+.+.+.+=++++.+...- ..++... ...-|.+.++.+.+.+ ---+..-...-...+-..|++++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 5544444442 3455566556666655432 2222211 1123466667776654 21122223333345567888999
Q ss_pred HHHHHH-HHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH----------------H
Q 039931 270 ANMLYE-EMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGL----------------C 332 (783)
Q Consensus 270 A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----------------~ 332 (783)
|++++. ...+.-..-+...-+--+..+...+++.+-.++-.++...|... |...++.+ .
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhh
Confidence 999994 34333333344445566677888899999888888888776442 22222211 1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYS---RAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPE 409 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 409 (783)
..+..+...+..++..... ....|-+-+.++. .-|+.+++...|-+- .|..| .|..=+..|...=..+.
T Consensus 285 ~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q 356 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQ 356 (932)
T ss_pred hhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHH
Confidence 1223333333333333221 1112333333333 346666655444221 12111 12212222222222222
Q ss_pred HHHHHHHHHHcCCCC--CHh---hHHHHHHHHHhcC-----CHHHHHHHHHHHH---hC------CCCCCH---------
Q 039931 410 AWDLLCKMIEKGFPI--NKV---AFTVLLDGYFRIG-----DLIGAQSLWNELN---RR------KIFPDA--------- 461 (783)
Q Consensus 410 a~~~~~~~~~~~~~~--~~~---~~~~li~~~~~~g-----~~~~A~~~~~~~~---~~------~~~p~~--------- 461 (783)
-..++.......... |.. .+...+..-.-.| +.+.-..++.+.. +. ++-|+.
T Consensus 357 ~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~ll 436 (932)
T KOG2053|consen 357 LKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLL 436 (932)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHH
Confidence 222222222211000 000 0111111111112 1112222221111 11 222222
Q ss_pred HHHHHHHHHHHccCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039931 462 VAFSAYINGLSKAGLVD---EAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIII 538 (783)
Q Consensus 462 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 538 (783)
-+-+.|++.+-+.++.. +|+-+++.-.... +.|..+--.+|..|+-.|-...|.++|+.+--+.+..|...|. +.
T Consensus 437 Lav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 437 LAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HH
Confidence 23356677777777655 4444555444432 3445555667788888888888888888877666665554443 23
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 539 NGFCKQGRMKPAIDAFMDMYRTGLVPD-IVTYNTLIGGYCKALDIVRADELV---NKMYAGGLDPDITTYNIRMHGYCNI 614 (783)
Q Consensus 539 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~---~~m~~~g~~p~~~~~~~li~~~~~~ 614 (783)
.-+...|++..+...++...+- ..-+ ..+-..+..+| +.|.+.+..+.. ++|.......-..+=+..++..+..
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455677888887777766542 1111 12222233333 555555544433 3333211111223345566777777
Q ss_pred CCHHHHHHHHHHHH
Q 039931 615 RKMNQAAMMLDELV 628 (783)
Q Consensus 615 g~~~~A~~~~~~m~ 628 (783)
++.++-...++.|.
T Consensus 593 ~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 593 DRGTQLLKLLESMK 606 (932)
T ss_pred CcHHHHHHHHhccc
Confidence 77777777777665
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00011 Score=68.37 Aligned_cols=195 Identities=13% Similarity=0.051 Sum_probs=135.9
Q ss_pred CChHHHHHHHHHHHH---cC-CCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 039931 545 GRMKPAIDAFMDMYR---TG-LVPDI-VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQ 619 (783)
Q Consensus 545 g~~~~A~~~~~~m~~---~g-~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 619 (783)
.+.++..+++.++.. .| ..|+. ..|..++-+....|+.+-|...++++... ++-+..+-..-..-+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 455666666666552 23 33443 24555566667788888888888888774 32233333333445667789999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH-hhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 039931 620 AAMMLDELVSAGIVPNTVTYNTLMNGV-CCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 620 A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 698 (783)
|+++++.+++.+ .-|.+++--=+... ..|+--+|++-+.+.++. +..|...|.-+...|...|++++|.-.+++++=
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999988754 22445553222221 125555788777776653 566889999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHhhhh--HHHHHHHHHHhcCCCcchhhhHHH
Q 039931 699 ISFDFDETSYKIMDRAYHNIQ--ENAEFFQETSEKSLFLDFLMGCMT 743 (783)
Q Consensus 699 ~~~~~d~~~~~~l~~~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 743 (783)
+.|- ++..+..+++.+...+ ++++.+++++++++++.+-..+.+
T Consensus 183 ~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 183 IQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 8875 8888888898876543 889999999999999988555544
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.44 E-value=0.00013 Score=83.14 Aligned_cols=201 Identities=15% Similarity=0.071 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHH
Q 039931 251 VVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPD-----AVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYD 325 (783)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 325 (783)
...|-..|....+.++.++|++++++.+.. +.+. .-.|.++++.-...|.-+...++|+++.+.. ....+|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 456667777777777777777777776654 2111 1235555555555555555566666555431 1234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 039931 326 ITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS---SCTCSSLLVGLC 402 (783)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~ 402 (783)
.|...|.+.+++++|.++|+.|.++ +......|...+..+.+.++-+.|..++.+..+. -|. .......+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 5556666666666666666666553 1124455555556666665555666655555543 122 112222333334
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 039931 403 KKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIF 458 (783)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 458 (783)
+.|+.+.+..+|+..+...+ --...|+..++.-.+.|+.+.++.+|+++...++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 55555555555555555422 24455555555555555555555555555555443
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=2.3e-05 Score=83.39 Aligned_cols=221 Identities=16% Similarity=0.095 Sum_probs=174.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 039931 387 LTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSA 466 (783)
Q Consensus 387 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 466 (783)
++|--..-..+...+.+.|-...|..+++++ ..|.-++.+|+..|+..+|..+..+..++ .||+..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 4444445566777888899999999999875 45667788999999999999998888774 578899999
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 039931 467 YINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGR 546 (783)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 546 (783)
+.+......-+++|.++++..... .-..+.....+.++++++.+.|+.-.+..+- -..+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhh
Confidence 998888888889999998876542 1111222223478899999999887765433 56788888888889999
Q ss_pred hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 547 MKPAIDAFMDMYRTGLVPD-IVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLD 625 (783)
Q Consensus 547 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 625 (783)
++.|.+.|...+.- .|| ...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999998873 564 6789999999999999999999999999866 4455667777777889999999999999
Q ss_pred HHHH
Q 039931 626 ELVS 629 (783)
Q Consensus 626 ~m~~ 629 (783)
++.+
T Consensus 612 rll~ 615 (777)
T KOG1128|consen 612 RLLD 615 (777)
T ss_pred HHHH
Confidence 9875
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.42 E-value=9.3e-05 Score=83.66 Aligned_cols=250 Identities=12% Similarity=0.074 Sum_probs=132.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039931 425 NKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIA 504 (783)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 504 (783)
+...+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+++..+ .+++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 3445556666666666666666666654443221 122222222234444443333332 1222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHH
Q 039931 505 GFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVR 584 (783)
Q Consensus 505 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 584 (783)
......++.-...+.+.|... .-+...+-.+..+|-+.|+.++|..+|+++++.. +-|..+.|.+...|+.. ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 222233332223333333332 1133455666677777777777777777777654 23566677777777766 7777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHc
Q 039931 585 ADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKM 664 (783)
Q Consensus 585 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~ 664 (783)
|.+++.+.+.. |...+++.++.++|.++... .|+.+.+- .++.+++...
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f--------------~~i~~ki~~~ 216 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFF--------------LRIERKVLGH 216 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHH--------------HHHHHHHHhh
Confidence 77777666542 55556777777777777653 33332221 1111122111
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHH
Q 039931 665 -AFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQET 728 (783)
Q Consensus 665 -~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~ 728 (783)
|..--..++..+-..|.+..++++++.+++.+++..++ |..+..-++..|.....+...+++.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~~kY~~~~~~ee~ 280 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYKEKYKDHSLLEDY 280 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHHHHccCcchHHHH
Confidence 11222334555555667777888888888888888877 6777777777665433333333333
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.41 E-value=3.3e-05 Score=72.50 Aligned_cols=166 Identities=13% Similarity=0.055 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
.|.|..+ -.+...+.-.|+-+.+..+........ +.+....+.++....+.|++..|...|.+.....| +|..+|+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~ 139 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNL 139 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhH
Confidence 3445555 556666666677776666666644332 34445555567777777777777777777766654 66667777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHH
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLN 259 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 259 (783)
+.-+|.+.|++++|..-|.+..+.- .-+....|.+.-.|.-.|+.+.| +.++......+.. |...-..|..
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A-------~~lll~a~l~~~a-d~~v~~NLAl 210 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDA-------ETLLLPAYLSPAA-DSRVRQNLAL 210 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHH-------HHHHHHHHhCCCC-chHHHHHHHH
Confidence 7777777777777777777666543 23444555555555566666666 4455544443322 4445555555
Q ss_pred HHHhcCChhHHHHHHHHH
Q 039931 260 GYVKARDIDQANMLYEEM 277 (783)
Q Consensus 260 ~~~~~g~~~~A~~~~~~m 277 (783)
.....|++++|.++-..-
T Consensus 211 ~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 211 VVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHhhcCChHHHHhhcccc
Confidence 666666666666655443
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.40 E-value=0.0002 Score=81.52 Aligned_cols=220 Identities=10% Similarity=-0.035 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEK-GFP---INKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYI 468 (783)
Q Consensus 393 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 468 (783)
.|-.-|......++.++|.++.++.+.. ++. --...|.++++.-..-|.-+...++|+++.+.. . ....|..|.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHHHHH
Confidence 3444444444444444444444444432 000 011234444444444444444455555444421 0 122344444
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCh
Q 039931 469 NGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLL-PDNFTFNIIINGFCKQGRM 547 (783)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~ 547 (783)
..|.+.+.+++|-++++.|.+. +.-....|...++.+.+.++-+.|..++.+..+.=++ -.+....-.+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 5555555555555555555443 1223344444455555555555555555554443111 0122222333334445555
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC
Q 039931 548 KPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI--TTYNIRMHGYCNIRK 616 (783)
Q Consensus 548 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~ 616 (783)
+.+..+|+..+..- +--...|+..|+.-.++|+.+.++.+|++....++.|-. ..|.-.+..=-+.|+
T Consensus 1617 eRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 55555555554431 223445555555555555555555555555555444422 334444433334444
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.39 E-value=0.00012 Score=72.05 Aligned_cols=186 Identities=13% Similarity=0.019 Sum_probs=124.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH--H
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSE---SAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN--Y 175 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~--~ 175 (783)
+..+..+-.+...|.+.|++++|...|+++.... +.+. .++..+...+.+.|++++|...|+++++..|.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456788899999999999999999999998875 2222 46788899999999999999999999987663332 2
Q ss_pred HHHHHHHHHHhc--------CChhhHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCC
Q 039931 176 TFNALILGFCRN--------GCIRIGESLLHVMHKYMCVADF-FAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEG 246 (783)
Q Consensus 176 ~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g 246 (783)
++..+..++... |++++|.+.++++.+.. |+. ..+..+... . .......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~----------------~~~~~~~--- 166 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-D----------------YLRNRLA--- 166 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-H----------------HHHHHHH---
Confidence 455566666654 77888899988887653 332 222222111 0 0001000
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 039931 247 LSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDI--APDAVTFNIIVSGHCKYGGMEDGDRLLRDLSV 314 (783)
Q Consensus 247 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 314 (783)
.....+...|.+.|++.+|+..+++..+... +.....+..+..++.+.|+.++|...++.+..
T Consensus 167 -----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 167 -----GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -----HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0112455667788888888888888776522 11235566666777777777777766666554
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=3e-05 Score=82.50 Aligned_cols=118 Identities=9% Similarity=-0.028 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 039931 474 AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDA 553 (783)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 553 (783)
.++++++.+.|+.-.+.. +.-..+|-.+..+..+.++++.|.+.|..-....+. +...||.+-.+|.+.|+-.+|...
T Consensus 498 ~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHH
Confidence 344444444444433321 122334444444444445555555544444433211 334455555555555555555555
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 554 FMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 554 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+.+..+.+ .-+...|...+....+.|.+++|++.+.++.+
T Consensus 576 l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 576 LKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 55554443 22333444444444455555555555544443
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.31 E-value=2.7e-05 Score=69.44 Aligned_cols=108 Identities=10% Similarity=-0.066 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
+..+..+..++...|++++|...|+.++..+ +.+...|..+...+.+.|++++|+..|++.++.+| .+..++..+..+
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~ 101 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHH
Confidence 3345567888999999999999999999987 56889999999999999999999999999999876 788899999999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNI 214 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (783)
+...|++++|...|++..+.. +.+...+..
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~ 131 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMS-YADASWSEI 131 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 999999999999999998864 334444433
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.28 E-value=0.00014 Score=71.70 Aligned_cols=184 Identities=16% Similarity=0.053 Sum_probs=104.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH----HH
Q 039931 425 NKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIF-PD-AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNN----FA 498 (783)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~ 498 (783)
....+..+...+.+.|+++.|...|+++....+. |. ..++..+...+.+.|++++|...++++.+.. |+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence 4556666777777777777777777777665322 11 1355666677777777777777777776642 221 13
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 039931 499 YNSLIAGFCNR--------GKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYN 570 (783)
Q Consensus 499 ~~~li~~~~~~--------g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 570 (783)
+..+..++.+. |+.++|.+.++.+....+. +...+..+.... ..... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~----~~~~~-------~~-------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD----YLRNR-------LA-------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH----HHHHH-------HH-------HHHH
Confidence 34444444433 5566666666666655322 222221111100 00000 00 0112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 571 TLIGGYCKALDIVRADELVNKMYAGGL-DP-DITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 571 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.+...+.+.|++++|...+++..+..- .| ....+..+..++.+.|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445567777888888888887776310 12 245677777888888888888887777664
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.00031 Score=78.88 Aligned_cols=131 Identities=9% Similarity=0.001 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 039931 495 NNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-DIVTYNTLI 573 (783)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li 573 (783)
+...+..|.....+.|.+++|..+++...+..+. +......++..+.+.+++++|+..+++.... .| +......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 3445555555555555555555555555554222 3344444555555555555555555555543 23 233444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++.++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555411 12245555555555555555555555555553
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.001 Score=62.66 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=55.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 039931 433 LDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCN---- 508 (783)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 508 (783)
...|+..|++++|++..+... +......=+..+.+..+++-|.+.+++|.+. .+..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 344555555555555554411 1111112223344455555555555555542 234444444444432
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039931 509 RGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 509 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
.+++.+|.-+|++|.++ ..|++.+.+....++...|++++|..++++.+..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 23455555555555543 3445555555555555555555555555555543
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00051 Score=64.57 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=51.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH----hc
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLC----WA 334 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~ 334 (783)
..|+..|++++|++...... +......=...+.+..+++-|.+.+++|.+.+ +..+.+.|..++. ..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34555555555555554411 12222222223334444555555555554432 2222322222222 22
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 039931 335 GRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF 385 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (783)
+++.+|.-+|++|.++ ..|+..+.+-+..++...|++++|..++++....
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455555555555442 3344445555555555555555555555555444
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.25 E-value=0.00016 Score=68.27 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--hhHH
Q 039931 334 AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVG-LCKKGR--LPEA 410 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a 410 (783)
.++.+++...+++.++..+. |...|..+...|...|++++|...|++..+... .+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555555554433 566666666666666666666666666665432 244445555544 244444 3566
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 039931 411 WDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR 455 (783)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 455 (783)
.+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666665433 5555555556666666666666666665554
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.24 E-value=0.00044 Score=77.64 Aligned_cols=218 Identities=13% Similarity=0.060 Sum_probs=149.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 039931 318 LPNCTLYDITVAGLCWAGRLDEAM-EFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSS 396 (783)
Q Consensus 318 ~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 396 (783)
..++...+.+-......|..++|- +++.+..+ ++..........+++.-....... ...+...+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 91 (694)
T PRK15179 25 ASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVL 91 (694)
T ss_pred CCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHH
Confidence 344555555556666777776663 44444432 233333333333333333333222 3446778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 039931 397 LLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGL 476 (783)
Q Consensus 397 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 476 (783)
|.....+.|..++|..+++.+.+..+. +......+...+.+.+++++|+...++.....+. +....+.+..++.+.|+
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcc
Confidence 888888999999999999988887433 6777888888899999999999999988887655 66777788888889999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039931 477 VDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMD 556 (783)
Q Consensus 477 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 556 (783)
+++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+. ..|....|+..+ +++..-..++++
T Consensus 170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~~~~~~~~ 241 (694)
T PRK15179 170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNADLAALRR 241 (694)
T ss_pred hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHHHHHHHHH
Confidence 999999999988743 334778888888888899999999999988776 234555555543 233444455555
Q ss_pred HH
Q 039931 557 MY 558 (783)
Q Consensus 557 m~ 558 (783)
+.
T Consensus 242 ~~ 243 (694)
T PRK15179 242 LG 243 (694)
T ss_pred cC
Confidence 54
No 130
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.24 E-value=4.5e-05 Score=72.03 Aligned_cols=124 Identities=8% Similarity=-0.022 Sum_probs=104.3
Q ss_pred hHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hhHHHHHH
Q 039931 86 SKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSL-LRVGD--YGSVWKLF 162 (783)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l-~~~g~--~~~A~~~~ 162 (783)
..+.+..+.......|.+...|..|...|...|++++|...|++..+.+ +.+...+..+..++ ...|+ .++|.+++
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3455666666666678899999999999999999999999999999987 56788888888875 67777 59999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhH
Q 039931 163 RDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAY 212 (783)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 212 (783)
++.++.+| .+..++..+...+...|++++|...++++.+.. +|+..-+
T Consensus 134 ~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 134 DKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 99999877 577889999999999999999999999998875 4555444
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.19 E-value=0.00056 Score=77.54 Aligned_cols=222 Identities=14% Similarity=0.072 Sum_probs=129.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----------
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP---------- 170 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~---------- 170 (783)
+.+...+..|+..|...+++++|.++.+..++.. +.....|..+...+...++.+++..+ .+...-.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 5677899999999999999999999999877764 33344444555566777776666555 3332211
Q ss_pred --------CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHH
Q 039931 171 --------RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMI 242 (783)
Q Consensus 171 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m 242 (783)
..+..++..+..+|-+.|+.++|..+++++++.. +.|+.+.|-+.-.|+.. ++++|+ ++..+.
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~-------~m~~KA 175 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI-------TYLKKA 175 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH-------HHHHHH
Confidence 0112344555555555666666666666666554 44555566666555555 555552 222222
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhC-CCCCcH
Q 039931 243 QEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVS-GLLPNC 321 (783)
Q Consensus 243 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 321 (783)
.. .|...+++..+.++|.++....+ + +++.-.++.+.+... +..--+
T Consensus 176 V~---------------~~i~~kq~~~~~e~W~k~~~~~~--~---------------d~d~f~~i~~ki~~~~~~~~~~ 223 (906)
T PRK14720 176 IY---------------RFIKKKQYVGIEEIWSKLVHYNS--D---------------DFDFFLRIERKVLGHREFTRLV 223 (906)
T ss_pred HH---------------HHHhhhcchHHHHHHHHHHhcCc--c---------------cchHHHHHHHHHHhhhccchhH
Confidence 11 14444555555555555555421 1 222222233333322 222334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 322 TLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYS 367 (783)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 367 (783)
.++-.+-..|-..++++++..+|+.+++.... |.....-++..|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 44555666777888888999999988887555 6666677777765
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.0004 Score=65.41 Aligned_cols=126 Identities=17% Similarity=0.116 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 462 VAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGF 541 (783)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 541 (783)
.....++....+.|++.+|...|.+..... ++|..+|+.+.-+|.+.|+.+.|..-|.+..+..+. ++..+|.+...+
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~ 178 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHH
Confidence 333334444445555555555555444332 344444555555555555555555554444444222 333444444444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 039931 542 CKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVN 590 (783)
Q Consensus 542 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 590 (783)
.-.|+.+.|..++......+ .-|...-..|.-.....|++++|.++..
T Consensus 179 ~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 44455555555544444332 1133444444444444555555544433
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.12 E-value=0.00023 Score=63.51 Aligned_cols=90 Identities=7% Similarity=-0.175 Sum_probs=40.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCH
Q 039931 503 IAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDI 582 (783)
Q Consensus 503 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 582 (783)
...+...|++++|...|+......+. +...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 33444444444444444444443222 34444444444444444444444444444421 12344444444444444444
Q ss_pred HHHHHHHHHHHH
Q 039931 583 VRADELVNKMYA 594 (783)
Q Consensus 583 ~~A~~~~~~m~~ 594 (783)
++|+..|+...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.09 E-value=0.00012 Score=64.84 Aligned_cols=110 Identities=9% Similarity=0.000 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
.|.+......+...+...|++++|...|+.+...+ +.+...+..+...+.+.|++++|...|++.++.++ .+...+..
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~ 90 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFH 90 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHH
Confidence 34455677888899999999999999999998876 56788899999999999999999999999988865 56777888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHH
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKYMCVADFFAYN 213 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 213 (783)
+...+...|++++|...|++..+.. |+...+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 8999999999999999999998764 5544433
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0043 Score=58.12 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=50.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 039931 474 AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDA 553 (783)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 553 (783)
.|++++|.++++.+.+.. +.|.+++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344444444444444332 233333433333333344444444444444433 222455555555555555555555555
Q ss_pred HHHHHHcCCCC-ChhHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 039931 554 FMDMYRTGLVP-DIVTYNTLIGGYCKAL---DIVRADELVNKMYA 594 (783)
Q Consensus 554 ~~~m~~~g~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 594 (783)
+++++-. .| +...+..+...+.-.| +.+-|.+++.+.++
T Consensus 177 lEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 177 LEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5555442 23 2333333333332222 33445555555554
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=8.4e-06 Score=52.43 Aligned_cols=35 Identities=43% Similarity=0.741 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 039931 252 VVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDA 286 (783)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 286 (783)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.98 E-value=0.0024 Score=65.64 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=5.8
Q ss_pred HccCChHHHHHHHHHH
Q 039931 472 SKAGLVDEAYGVFLEM 487 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m 487 (783)
.+.++.++|.+.++.+
T Consensus 351 ~~~nk~~~A~e~~~ka 366 (484)
T COG4783 351 LEANKAKEAIERLKKA 366 (484)
T ss_pred HHcCChHHHHHHHHHH
Confidence 3333333333333333
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=0.0035 Score=64.43 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=119.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 477 (783)
...+...|++++|+..+..++.. .+-|+.......+.+.+.++.++|.+.++.+....+. ....+-.+..+|.+.|+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCCh
Confidence 33456788999999999998887 4458888888899999999999999999999887433 266777888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 478 DEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 478 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
.+|..+++...... +-|+..|..|.++|...|+..++..-.. .+|...|++++|+..+...
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHH
Confidence 99999999988763 6688899999999999999877766443 4566689999999998888
Q ss_pred HHcCCCCChhHH
Q 039931 558 YRTGLVPDIVTY 569 (783)
Q Consensus 558 ~~~g~~p~~~~~ 569 (783)
.+. ..++..+|
T Consensus 452 ~~~-~~~~~~~~ 462 (484)
T COG4783 452 SQQ-VKLGFPDW 462 (484)
T ss_pred HHh-ccCCcHHH
Confidence 765 24444444
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.00041 Score=61.41 Aligned_cols=94 Identities=14% Similarity=0.026 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCN 613 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 613 (783)
...+...+...|++++|.+.|+.+...+ +.+...|..+...+...|++++|...+++..+.+ +.+..++..+..+|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444445555555555555555555432 2244455555555555555555555555554422 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 039931 614 IRKMNQAAMMLDELVS 629 (783)
Q Consensus 614 ~g~~~~A~~~~~~m~~ 629 (783)
.|++++|...|++.++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.88 E-value=2.1e-05 Score=50.14 Aligned_cols=33 Identities=42% Similarity=0.652 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 039931 252 VVYNALLNGYVKARDIDQANMLYEEMRSRDIAP 284 (783)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 284 (783)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 588999999999999999999999999888877
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.82 E-value=3.6e-05 Score=49.41 Aligned_cols=33 Identities=30% Similarity=0.697 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN 635 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 635 (783)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=0.0015 Score=58.54 Aligned_cols=126 Identities=10% Similarity=0.023 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPD--NFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPD--IVTYNTLIG 574 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~ 574 (783)
|..++..+ ..++...+...++.+.+...... ....-.+...+...|++++|...|+........|+ ......|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 34444444 36667777777777776533211 22233345666777777788777777776542222 224455666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 575 GYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 575 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
.+...|++++|+..++..... ......+....++|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777778888888777664321 223445666677888888888888777653
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.72 E-value=0.0011 Score=68.86 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=83.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc
Q 039931 500 NSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKA 579 (783)
Q Consensus 500 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 579 (783)
.+|+..+...++++.|..+|+++.+.. |++ ...++..+...++-.+|.+++++.++.. +-+......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555556677777777777777763 333 3346666666777777777777777542 23555566666667778
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 580 LDIVRADELVNKMYAGGLDPD-ITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 580 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
++++.|+++.+++.+ +.|+ ..+|..|..+|.+.|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888876 4564 4678888888888888888887777664
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.69 E-value=0.0014 Score=68.12 Aligned_cols=123 Identities=20% Similarity=0.159 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039931 325 DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK 404 (783)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 404 (783)
.+|+..+...++++.|..+|+++.+.. |+ ....++..+...++..+|.+++++..+.. +-+......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555556677777777777777763 33 34446666666777777777777776543 22444455555556667
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 405 GRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELN 453 (783)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (783)
++.+.|+.+.+++.+..+ .+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777666632 245566666667777777766666666554
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.68 E-value=7.8e-05 Score=47.45 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELVSAGIVP 634 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 634 (783)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.63 E-value=0.00084 Score=69.92 Aligned_cols=124 Identities=21% Similarity=0.268 Sum_probs=97.8
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039931 456 KIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRI--GFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFT 533 (783)
Q Consensus 456 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 533 (783)
+...+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33447777888888888888888888888888765 2222234556889999999999999999888888899999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKA 579 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 579 (783)
+|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888776666777776666666555
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.63 E-value=0.004 Score=55.76 Aligned_cols=116 Identities=21% Similarity=0.148 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhH
Q 039931 334 AGRLDEAMEFFEDMFEKGISP--SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSS--CTCSSLLVGLCKKGRLPE 409 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~ 409 (783)
.++...+...++.+.+....- .....-.+...+...|++++|...|+........|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 555555555566655542221 0122223345555566666666666666554322211 122334445555566666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 410 AWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNE 451 (783)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (783)
|+..++..... ......+....+++.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66655443222 12333444555555555555555555543
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=6.4e-05 Score=46.64 Aligned_cols=31 Identities=42% Similarity=0.802 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039931 252 VVYNALLNGYVKARDIDQANMLYEEMRSRDI 282 (783)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 282 (783)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.00095 Score=54.32 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFC 185 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (783)
++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+......+ .+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHH
Confidence 35667788888999999999999998875 34557788888999999999999999999988765 45567888888999
Q ss_pred hcCChhhHHHHHHHHHhC
Q 039931 186 RNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~ 203 (783)
..|+++.|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887754
No 150
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0016 Score=60.17 Aligned_cols=102 Identities=13% Similarity=0.001 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 039931 142 ITILFKSLLRVGDYGSVWKLFRDMIHLGPRP--SNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAY 219 (783)
Q Consensus 142 ~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (783)
|..+...+...|++++|+..|++.+...+.+ ...++..+...+...|++++|+..+++..+.. +....++..+...+
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~ 116 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3444444445555555555555554432222 12345555555555566666665555555432 22233344444444
Q ss_pred H-------hcCCcchHhhhccchHHHHHHHHH
Q 039931 220 C-------IRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 220 ~-------~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
. +.|++++|+..+++|..+++....
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~ 148 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIA 148 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 4 667777776666666677776655
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.00032 Score=67.36 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=78.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhh-ccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC
Q 039931 608 MHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMN-GVCC-DILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQG 684 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~-~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g 684 (783)
.+-..+.+++.+|+..|.+.++ +.|...+|.+-=. +|++ |.++.|++-.+..+. +.|.. .+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 4566788999999999999987 5777766655443 4555 888999999998888 67765 78999999999999
Q ss_pred ChhhHHHHHHHHhhcCCCCCHHHHHHHH
Q 039931 685 MPEKTLLWGQKLSEISFDFDETSYKIMD 712 (783)
Q Consensus 685 ~~~~A~~~~~~~~~~~~~~d~~~~~~l~ 712 (783)
++++|++.|+++++++|. +.+.+..|.
T Consensus 164 k~~~A~~aykKaLeldP~-Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPD-NESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCC-cHHHHHHHH
Confidence 999999999999999976 554443333
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.56 E-value=0.0024 Score=54.83 Aligned_cols=100 Identities=13% Similarity=0.043 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIM--PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRP--SNYTFNAL 180 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 180 (783)
.++-.++..+.+.|++++|...|..+.+.... .....+..+...+.+.|+++.|...|+.+....|.. ...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35677888899999999999999999876421 114567779999999999999999999998865542 24567888
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCC
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
..++...|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999999998875
No 153
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.56 E-value=0.0011 Score=69.11 Aligned_cols=126 Identities=17% Similarity=0.277 Sum_probs=106.3
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 039931 419 EKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR--KIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNN 496 (783)
Q Consensus 419 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 496 (783)
..+.+.+......+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|..++++.+++.=...|+-||.
T Consensus 59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 3455667888888999999999999999999988775 22223345679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 497 FAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQ 544 (783)
Q Consensus 497 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 544 (783)
.++|.|++.+.+.|++..|.++..+|...+...+..|+.--+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999998887777777777666666655
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.0014 Score=63.12 Aligned_cols=100 Identities=21% Similarity=0.201 Sum_probs=82.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhh-c
Q 039931 573 IGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-VTYNTLMNGVCC-D 649 (783)
Q Consensus 573 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~-~ 649 (783)
..-..+.+++++|+..|.+.++ +.| |.+.|..-..+|++.|.++.|++-.+..+. +.|.. .+|..|-.++.. |
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 4557788999999999999998 566 667788889999999999999999998876 45553 678888887765 8
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039931 650 ILDRAIIIAAKLLKMAFVPNVVTTNVLLS 678 (783)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 678 (783)
++++|++.|++.++ +.|+..+|-.=+.
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 99999999999999 8899887744433
No 155
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.48 E-value=0.0016 Score=52.85 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=32.2
Q ss_pred HcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 578 KALDIVRADELVNKMYAGGL-DPDITTYNIRMHGYCNIR--------KMNQAAMMLDELVSAGIVPNTVTYNTLMNGV 646 (783)
Q Consensus 578 ~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 646 (783)
..+++...-.+++.+.+.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..||+.++..+
T Consensus 37 ~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 37 ENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred hhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 33444444444444444444 444444444444333321 2333444555555555555555555555444
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.45 E-value=0.00023 Score=54.23 Aligned_cols=68 Identities=25% Similarity=0.212 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcch
Q 039931 669 NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDF 737 (783)
Q Consensus 669 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~ 737 (783)
+..+|..+...+...|++++|+..++++++++|. ++.+|..++.+|...+++.+.+.+.+++++.++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777777788888888888888877776 6777777777765533367777777777666554
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.41 E-value=0.00017 Score=44.64 Aligned_cols=29 Identities=34% Similarity=0.740 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELVSAG 631 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 631 (783)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 158
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.38 E-value=0.003 Score=63.01 Aligned_cols=262 Identities=13% Similarity=0.045 Sum_probs=116.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHH--h--CCC-CCCHHhHHHHHHH
Q 039931 148 SLLRVGDYGSVWKLFRDMIHLGPRPSN----YTFNALILGFCRNGCIRIGESLLHVMH--K--YMC-VADFFAYNILINA 218 (783)
Q Consensus 148 ~l~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~--~--~g~-~~~~~~~~~li~~ 218 (783)
-+++.|+....+.+|+..++.|.+ |. ..|.-|.++|.-.+++++|++.+..=+ . .|- .-...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 356666666666666666665542 22 235556666666666666666543211 0 010 1122233445555
Q ss_pred HHhcCCcchHhhhccc----hHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--------------------hhHHHHHH
Q 039931 219 YCIRGQTSYALGKCGA----GRMIFDMIQEEGLSPNVVVYNALLNGYVKARD--------------------IDQANMLY 274 (783)
Q Consensus 219 ~~~~g~~~~A~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------------------~~~A~~~~ 274 (783)
+--.|.+++|+-.|.. |+++=+++.+ ..++..|...|...|+ ++.|.+.|
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e------~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLE------SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhh------hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 5666777777655432 3333333332 2234445555554443 22333333
Q ss_pred HHHHh----CCC-CCCHhHHHHHHHHHHccCChhHHHHHHHHHHhC----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHH
Q 039931 275 EEMRS----RDI-APDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVS----GLL-PNCTLYDITVAGLCWAGRLDEAMEFF 344 (783)
Q Consensus 275 ~~m~~----~g~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 344 (783)
.+=++ .|- -..-..|..|.+.|.-.|+++.|...++.-... |-. .....+..+.++++-.|+++.|.+.+
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 33211 110 001223455555555566677666655443221 111 11223444555555555555555555
Q ss_pred HHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039931 345 EDMFEK----GI-SPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF----G-LTPSSCTCSSLLVGLCKKGRLPEAWDLL 414 (783)
Q Consensus 345 ~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~ 414 (783)
+.-... |- .....+..+|.+.|.-..++++|+.++.+-... + ..-....|.+|..++...|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 543321 10 112223344444444445555555444332110 0 0112233444455555555555554444
Q ss_pred HH
Q 039931 415 CK 416 (783)
Q Consensus 415 ~~ 416 (783)
+.
T Consensus 339 e~ 340 (639)
T KOG1130|consen 339 EL 340 (639)
T ss_pred HH
Confidence 43
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.38 E-value=0.05 Score=53.25 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=34.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 039931 330 GLCWAGRLDEAMEFFEDMFEKGISPSIFAF---NSIIAAYSRAGLEENAFEAYKIMHQFG 386 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~ 386 (783)
.+...|++++|.+.|+++....+.+ .... -.++.+|.+.+++++|...+++..+..
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3455677777777777777653332 2221 334566677777777777777776653
No 160
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0062 Score=59.17 Aligned_cols=127 Identities=11% Similarity=0.100 Sum_probs=105.1
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHH
Q 039931 87 KHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG---DYGSVWKLFR 163 (783)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g---~~~~A~~~~~ 163 (783)
..++..+.......|.|..-|..|.++|.+.|+++.|..-|.+..+.. +++...+..+..++..+. ...++..+|+
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 345556666666778999999999999999999999999999999886 578888888888887665 3468999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 039931 164 DMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILIN 217 (783)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (783)
++++.++ .|+.+...+...+...|++.+|...++.|++.. |....+..+|.
T Consensus 218 ~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 218 QALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 9999876 788888889999999999999999999999875 33344444443
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.37 E-value=0.0053 Score=52.69 Aligned_cols=101 Identities=12% Similarity=-0.034 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCC----HHHH
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT----VTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPN----VVTT 673 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~----~~~~ 673 (783)
++..++..+.+.|++++|.+.|+++.+. .|+. ..+..+...+.. +++++|...++++... .|+ ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHH
Confidence 3445555556666666666666666542 1221 122222223332 5666666666665542 122 2445
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHH
Q 039931 674 NVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSY 708 (783)
Q Consensus 674 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 708 (783)
..+...+.+.|+.++|.+.++++.+..|+ +..+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~ 113 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPG-SSAAK 113 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcC-ChhHH
Confidence 56666777788888888888888887765 44444
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.37 E-value=0.0041 Score=64.95 Aligned_cols=101 Identities=6% Similarity=-0.019 Sum_probs=86.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 039931 109 ALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG 188 (783)
Q Consensus 109 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 188 (783)
.....+...|++++|+..|+++++.+ +.+...|..+..+|.+.|++++|+..+++++...+ .+...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 34566778899999999999999987 56778888999999999999999999999999876 57778999999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHhHH
Q 039931 189 CIRIGESLLHVMHKYMCVADFFAYN 213 (783)
Q Consensus 189 ~~~~A~~~~~~m~~~g~~~~~~~~~ 213 (783)
++++|...|++.++.. |+.....
T Consensus 85 ~~~eA~~~~~~al~l~--P~~~~~~ 107 (356)
T PLN03088 85 EYQTAKAALEKGASLA--PGDSRFT 107 (356)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHH
Confidence 9999999999998864 4444333
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.35 E-value=0.0067 Score=56.16 Aligned_cols=117 Identities=11% Similarity=0.047 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS--ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
....+..+...|...|++++|...|++.++.+..++ ...+..+...+.+.|++++|+..+.+.+...+ .+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 345788899999999999999999999987653332 46788899999999999999999999998765 456677778
Q ss_pred HHHHHhcCC--------------hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 039931 181 ILGFCRNGC--------------IRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQ 224 (783)
Q Consensus 181 ~~~~~~~g~--------------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (783)
...+...|+ +++|.+.+++..+.+ |+ .|..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--PN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--ch--hHHHHHHHHHhcCc
Confidence 888888776 455666666665432 33 36666666655554
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.34 E-value=0.0037 Score=50.84 Aligned_cols=74 Identities=20% Similarity=0.419 Sum_probs=37.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 039931 503 IAGFCNRGKLNEALKLEREMRQKGL-LPDNFTFNIIINGFCKQG--------RMKPAIDAFMDMYRTGLVPDIVTYNTLI 573 (783)
Q Consensus 503 i~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~li 573 (783)
|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555544322 1223444555555555555555555555
Q ss_pred HHH
Q 039931 574 GGY 576 (783)
Q Consensus 574 ~~~ 576 (783)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 444
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.33 E-value=0.004 Score=50.49 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=39.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 039931 537 IINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRK 616 (783)
Q Consensus 537 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 616 (783)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3334444444455554444444321 1122334444444444455555555554444421 1122344444445555555
Q ss_pred HHHHHHHHHHHH
Q 039931 617 MNQAAMMLDELV 628 (783)
Q Consensus 617 ~~~A~~~~~~m~ 628 (783)
+++|...+.+..
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.33 E-value=0.0065 Score=61.36 Aligned_cols=212 Identities=10% Similarity=0.088 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGI---MPS--ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
..|......|...|++++|...|.+..+... .+. ...|......+ +.+++++|++.|++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A-------------- 100 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKA-------------- 100 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHH--------------
Confidence 4677788888888888888888887644210 000 01122222222 222444444444443
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIR-GQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
+..|...|++..|-.++.++- ..|-.. |++++|+..+++|..+|+.-... .--...+..+.
T Consensus 101 -~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~--~~a~~~~~~~A 162 (282)
T PF14938_consen 101 -IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSP--HSAAECLLKAA 162 (282)
T ss_dssp -HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCCh--hhHHHHHHHHH
Confidence 455677777777766665543 455566 78888888887777777653210 01134567788
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC-----Hh-HHHHHHHHHHccCChhHHHHHHHHHHhCCC--CC--cHHHHHHHH
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPD-----AV-TFNIIVSGHCKYGGMEDGDRLLRDLSVSGL--LP--NCTLYDITV 328 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~--~~~~~~~li 328 (783)
..+.+.|++++|.++|++....-...+ .. .|...+-++...|+...|.+.+++.....+ .. .......|+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 889999999999999999876533211 11 122223345556777778777777765432 11 122334444
Q ss_pred HHHHh--cCCHHHHHHHHHHHHH
Q 039931 329 AGLCW--AGRLDEAMEFFEDMFE 349 (783)
Q Consensus 329 ~~~~~--~g~~~~A~~~~~~m~~ 349 (783)
.++-. ...+.+|..-|+.+..
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHhCCHHHHHHHHHHHcccCc
Confidence 44432 1224455555544443
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.31 E-value=0.0077 Score=55.77 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHH
Q 039931 139 ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPS--NYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILI 216 (783)
Q Consensus 139 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (783)
...+..+...+...|++++|...|++.++..+.+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34577788888999999999999999998655443 4678889999999999999999999998764 34566777777
Q ss_pred HHHHhcCCcchHh
Q 039931 217 NAYCIRGQTSYAL 229 (783)
Q Consensus 217 ~~~~~~g~~~~A~ 229 (783)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 8888877765553
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.29 Score=49.68 Aligned_cols=272 Identities=13% Similarity=0.042 Sum_probs=142.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 039931 330 GLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPE 409 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 409 (783)
.+.+..++.+|+..+...++..+. ++.-|..-...+...|++++|.--.+.-.+.... .+......-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 355667777777777777776554 4566666666677777777777666555443211 11223333334444444444
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH-HHHHccCChHHHHHHHHHH
Q 039931 410 AWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKI-FPDAVAFSAYI-NGLSKAGLVDEAYGVFLEM 487 (783)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m 487 (783)
|.+.++. ...+ ....|+..++....... +|...+|..+- ..+.-.|+.++|..+--..
T Consensus 136 A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 4444431 0000 11122222222222111 12222222221 2334455666666555555
Q ss_pred HhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHhcCChHHHHH
Q 039931 488 SRIGFVPNNFAYNSLIAGF--CNRGKLNEALKLEREMRQKGLLPDNFT-------------FNIIINGFCKQGRMKPAID 552 (783)
Q Consensus 488 ~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A~~ 552 (783)
.+.. ....+...+++. --.++.+.|...|++.+..+ |+... +..=.+-..+.|++..|.+
T Consensus 196 lkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 196 LKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred Hhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 5432 111222223222 23445555666665555442 22111 1111234567889999999
Q ss_pred HHHHHHHc---CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 553 AFMDMYRT---GLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 553 ~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
.|.+.+.. ...|+...|.....+..+.|+.++|+.--+...+ +.|.. ..|..-..++.-.++|++|.+-+++..
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888853 2334455666667777788999999888888775 33321 223333456666788899988888877
Q ss_pred HC
Q 039931 629 SA 630 (783)
Q Consensus 629 ~~ 630 (783)
+.
T Consensus 349 q~ 350 (486)
T KOG0550|consen 349 QL 350 (486)
T ss_pred hh
Confidence 53
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.24 E-value=0.0082 Score=55.35 Aligned_cols=96 Identities=11% Similarity=0.012 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMP--SESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALI 181 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 181 (783)
...+..+...+...|++++|+..|++.+.....+ ...++..+...+...|++++|+..|++.+...+ ....+++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 4567888889999999999999999998764222 235788899999999999999999999998754 4456677777
Q ss_pred HHHH-------hcCChhhHHHHHHHH
Q 039931 182 LGFC-------RNGCIRIGESLLHVM 200 (783)
Q Consensus 182 ~~~~-------~~g~~~~A~~~~~~m 200 (783)
..+. ..|+++.|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 7777 778877665555543
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.22 E-value=0.016 Score=63.19 Aligned_cols=65 Identities=11% Similarity=-0.015 Sum_probs=52.8
Q ss_pred HHHHHHH-HHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 636 TVTYNTL-MNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 636 ~~~~~~l-i~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
...|.++ +.+...|+.++|...+++++. +.|+...|..+...+...|+.++|...++++..++|.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3445444 223345899999999999998 5588888988998999999999999999999999976
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.21 E-value=0.074 Score=52.07 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=30.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039931 537 IINGFCKQGRMKPAIDAFMDMYRT--GLVPDIVTYNTLIGGYCKALDIVRADELVNKM 592 (783)
Q Consensus 537 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 592 (783)
+...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|.+....+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 445566666666666666666653 11112334445556666666666666555443
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.20 E-value=0.0063 Score=53.53 Aligned_cols=97 Identities=8% Similarity=-0.073 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
...-.+..-+...|++++|.++|+-+...+ +-+..-|..|.-.+-..|++++|+..|......+| .|+..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 344556667788999999999999999887 45677788899999999999999999999999886 7888888899999
Q ss_pred HhcCChhhHHHHHHHHHhC
Q 039931 185 CRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~ 203 (783)
...|+.+.|++.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999987753
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.19 E-value=0.00077 Score=53.72 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=56.1
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 039931 117 VEMSAEVMEILYRMREVGIM-PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGES 195 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~~g~~-~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 195 (783)
.|+++.|+..|+++.+.... ++...+..+...+.+.|++++|+.++++ .+.++ .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57788888888888887532 1344555578888888888888888887 43333 233444455788888888888888
Q ss_pred HHHH
Q 039931 196 LLHV 199 (783)
Q Consensus 196 ~~~~ 199 (783)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.18 E-value=0.0069 Score=60.91 Aligned_cols=129 Identities=10% Similarity=0.001 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 039931 498 AYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCK-QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGY 576 (783)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 576 (783)
+|..++....+.+..+.|..+|.+..+.+. .+...|-.....-.+ .++.+.|..+|+..++. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 444555555555555556666665553321 122333333333222 34444466666655554 334455555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 577 CKALDIVRADELVNKMYAGGLDPDI---TTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 577 ~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.+.++.+.|..+|++.+.. +.++. ..|...+.-=.+.|+++.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666665542 22211 3555555555566666666666655554
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.14 E-value=0.025 Score=49.85 Aligned_cols=85 Identities=9% Similarity=-0.083 Sum_probs=34.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 039931 366 YSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGA 445 (783)
Q Consensus 366 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 445 (783)
+...|++++|.++|+.+...++ -+..-|..|.-.+-..|++++|+..|.......+. |+..+-.+..++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHH
Confidence 3344444444444444433321 12233333333444444444444444444443322 334444444444444444444
Q ss_pred HHHHHHH
Q 039931 446 QSLWNEL 452 (783)
Q Consensus 446 ~~~~~~~ 452 (783)
++-|+..
T Consensus 123 ~~aF~~A 129 (157)
T PRK15363 123 IKALKAV 129 (157)
T ss_pred HHHHHHH
Confidence 4444433
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.13 E-value=0.0088 Score=60.14 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 462 VAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAG-FCNRGKLNEALKLEREMRQKGLLPDNFTFNIIING 540 (783)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 540 (783)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777777777777776532 2233334333333 22345666688888877765 34466777777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 039931 541 FCKQGRMKPAIDAFMDMYRTGLVPDI---VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD 600 (783)
Q Consensus 541 ~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 600 (783)
+.+.|+.+.|..+|++.+.. +.++. ..|...+..=.+.|+.+.+.++.+++.+ ..|+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hhhh
Confidence 78888888888888887754 22222 3777777777788888888888888776 3454
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.12 E-value=0.037 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 039931 360 NSIIAAYSRAGLEENAFEAYKIMHQ 384 (783)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~ 384 (783)
..+...+.+.|++++|.++|++...
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344445555555555555555543
No 178
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.11 E-value=0.012 Score=61.43 Aligned_cols=89 Identities=10% Similarity=-0.060 Sum_probs=51.2
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 039931 469 NGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMK 548 (783)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 548 (783)
..+...|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..+++++..... +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 34445566666666666666542 234445555555666666666666666666555332 4555555556666666666
Q ss_pred HHHHHHHHHHH
Q 039931 549 PAIDAFMDMYR 559 (783)
Q Consensus 549 ~A~~~~~~m~~ 559 (783)
+|...|++.++
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666666655
No 179
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.31 Score=49.41 Aligned_cols=286 Identities=10% Similarity=-0.031 Sum_probs=130.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 039931 110 LLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC 189 (783)
Q Consensus 110 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 189 (783)
.-..+.+...+.+|+..+..+++.+ +.+..-|..-+..+.--|++++|.--.+.-++..+ ..+....-..+++...+.
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHH
Confidence 3345555666666777776666665 23344444444455555666666555555444322 111223333333333344
Q ss_pred hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHH-HHCCCCCChHHHHHHH-HHHHhcCCh
Q 039931 190 IRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMI-QEEGLSPNVVVYNALL-NGYVKARDI 267 (783)
Q Consensus 190 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m-~~~g~~p~~~~~~~li-~~~~~~g~~ 267 (783)
..+|.+.++. ...| ...+ | ..-++.. +...-+|.-.+|-.|- ..+.-.|++
T Consensus 133 ~i~A~~~~~~---------~~~~-~~an----------a-------l~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 133 LIEAEEKLKS---------KQAY-KAAN----------A-------LPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred HHHHHHHhhh---------hhhh-HHhh----------h-------hhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 4444433330 0011 0000 0 0011111 1111113333333332 345556777
Q ss_pred hHHHHHHHHHHhCCCCCCHhHHHHHHH--HHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 268 DQANMLYEEMRSRDIAPDAVTFNIIVS--GHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFE 345 (783)
Q Consensus 268 ~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (783)
++|.+.--..++... ...+...++ ++.-.++.+.|...|.+.+..++. .. +.+..-.-.+.++
T Consensus 186 ~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpd--h~----------~sk~~~~~~k~le 250 (486)
T KOG0550|consen 186 DEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPD--HQ----------KSKSASMMPKKLE 250 (486)
T ss_pred hhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccChh--hh----------hHHhHhhhHHHHH
Confidence 777777666655421 122333333 233456666666666666554322 11 1111111112222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 039931 346 DMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFG---LTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGF 422 (783)
Q Consensus 346 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 422 (783)
.+.+. .+-..+.|++.+|.+.|.+.+... ..|+...|........+.|+.++|+.--+...+.
T Consensus 251 ~~k~~------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-- 316 (486)
T KOG0550|consen 251 VKKER------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-- 316 (486)
T ss_pred HHHhh------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--
Confidence 22221 223345667777777776665532 3344444555555566667777777666666554
Q ss_pred CCCHhhHH---HHHHHHHhcCCHHHHHHHHHHHHhC
Q 039931 423 PINKVAFT---VLLDGYFRIGDLIGAQSLWNELNRR 455 (783)
Q Consensus 423 ~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~ 455 (783)
|....- .-..++.-.++|++|.+-++...+.
T Consensus 317 --D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 317 --DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 322222 2223444556666666666665543
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.10 E-value=0.029 Score=61.32 Aligned_cols=63 Identities=16% Similarity=-0.036 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 565 DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 565 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+...|.++.-.....|++++|...++++.+ +.|+...|..+...+...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445666666556667788888888888777 346777777777888888888888888877765
No 181
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.09 E-value=0.0012 Score=52.66 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=39.7
Q ss_pred cCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 039931 544 QGRMKPAIDAFMDMYRTGL-VPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD-ITTYNIRMHGYCNIRKMNQAA 621 (783)
Q Consensus 544 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~ 621 (783)
.|+++.|+.+++++.+... .|+...+..+..+|.+.|++++|.+++++ .+ ..|+ ......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3556666666666655421 01233344455666666666666666655 21 1222 233333456666666666666
Q ss_pred HHHHH
Q 039931 622 MMLDE 626 (783)
Q Consensus 622 ~~~~~ 626 (783)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
No 182
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.08 E-value=0.4 Score=48.22 Aligned_cols=251 Identities=14% Similarity=0.090 Sum_probs=153.4
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 039931 472 SKAGLVDEAYGVFLEMSRIGFVPNNFA--YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKP 549 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 549 (783)
.-.|+++.|.+-|+.|... |.... ...|.-.--+.|..+.|.++-+.....-.. -.-.+.+.+...|..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 3467778888888777752 33222 222222234677777777777776655333 34556677778888888888
Q ss_pred HHHHHHHHHHcC-CCCChh--HHHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 039931 550 AIDAFMDMYRTG-LVPDIV--TYNTLIGGYC---KALDIVRADELVNKMYAGGLDPDITTY-NIRMHGYCNIRKMNQAAM 622 (783)
Q Consensus 550 A~~~~~~m~~~g-~~p~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~ 622 (783)
|+++.+.-.... +.+++. .-..|+.+-. -..+...|...-.+..+ +.||..-- ..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 888887655332 334432 1222222211 12356667766666665 56776433 334578899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhcc-HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhcC
Q 039931 623 MLDELVSAGIVPNTVTYNTLMNGVCCDI-LDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEIS 700 (783)
Q Consensus 623 ~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 700 (783)
+++.+.+....|+. +...+++-..+. .++. +-.+++.. ++||+ .....+..+-...|++..|..-.+.+....
T Consensus 285 ilE~aWK~ePHP~i--a~lY~~ar~gdta~dRl-kRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 285 ILETAWKAEPHPDI--ALLYVRARSGDTALDRL-KRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHHHhcCCChHH--HHHHHHhcCCCcHHHHH-HHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 99999987666665 222232211111 1111 11223333 56765 556667777888999999998888888777
Q ss_pred CCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCc
Q 039931 701 FDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFL 735 (783)
Q Consensus 701 ~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~ 735 (783)
| -...|..|.++-..--++..+.+..+.+++.-
T Consensus 360 p--res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 P--RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred c--hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4 57888888887432226667788888777664
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.67 Score=50.11 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=82.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVS-GLLPNCTLYDITVAGLCWAGRLDEAME 342 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 342 (783)
-|++++|.++|-+|-.++. .|..+.+.|++-...++++.--.. +-..-...++.+...+.....+++|.+
T Consensus 747 ~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888887766522 244555666666555555431110 001113345666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 039931 343 FFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGF 422 (783)
Q Consensus 343 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 422 (783)
.+..-.. -...+.++.+...+++-..+-+.+ +.+....-.+..++.+.|.-++|.+.+-+ .+.
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~ 880 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL 880 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh---ccC
Confidence 6654332 122344555555555444433332 33445555666777777777776665522 222
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 423 PINKVAFTVLLDGYFRIGDLIGAQSLWNE 451 (783)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (783)
+ .+.+..|...+++.+|.++-+.
T Consensus 881 p------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 P------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred c------HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 2334556666666666665544
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.01 E-value=0.0027 Score=48.29 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG-DYGSVWKLFRDMIH 167 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~ 167 (783)
.+|..+...+.+.|++++|+..|.+.++.+ +.+...|..+..++.+.| ++++|++.|++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344555555555555555555555555443 233444444555555555 35555555554444
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.97 E-value=0.003 Score=47.33 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=30.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 111 LHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 111 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
...+.+.|++++|...|+++++.. +.+...+..+...+...|++++|..+|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555555555555555554 334455555555555555555555555555544
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.96 E-value=0.035 Score=47.13 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHH
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPS--ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRP--SNYTFNALIL 182 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 182 (783)
.-.+..++-..|+.++|+.+|++.+..|...+ ...+-.+.+.+...|++++|..++++.....|.+ +......+.-
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 33456778889999999999999999986554 3456778889999999999999999998865431 2222222344
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC 220 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 220 (783)
++...|+.++|++.+-.... ++...|..-|..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 67789999999998877653 44446666666664
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.96 E-value=0.0029 Score=47.92 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=34.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 150 LRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 150 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
.+.|++++|++.|+++....| .+...+..+..+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666777777777666654 35555556667777777777777777766654
No 188
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.95 E-value=0.017 Score=53.37 Aligned_cols=102 Identities=25% Similarity=0.392 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHc-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 460 DAVAFSAYINGLSK-----AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTF 534 (783)
Q Consensus 460 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 534 (783)
+-.+|..+++.+.+ .|.++=....+..|.+-|+.-|..+|+.|++.+=+ |.+- |... +
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~-f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF-F 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH-H
Confidence 56666666666653 46667677777777777888888888888776654 2221 1110 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 039931 535 NIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580 (783)
Q Consensus 535 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 580 (783)
.++-.-| -.+-+-|++++++|...|+-||..++..+++.+++.+
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1110011 1233456666666666666666666666666665444
No 189
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.95 E-value=0.021 Score=52.72 Aligned_cols=122 Identities=17% Similarity=0.245 Sum_probs=76.9
Q ss_pred CCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 039931 563 VPDIVTYNTLIGGYCKA-----LDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTV 637 (783)
Q Consensus 563 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 637 (783)
..|..+|..+++.|.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+ |++- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 45667777777777643 5566666666777777777777777777766544 2221 2221
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----hhHHHHHHHHhhcCCC
Q 039931 638 TYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMP----EKTLLWGQKLSEISFD 702 (783)
Q Consensus 638 ~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~----~~A~~~~~~~~~~~~~ 702 (783)
......+ .-.+-+-|++++++|...|+.||..++..++..+.+.+.. ..-.-|+-+...++|=
T Consensus 108 fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP~ 174 (228)
T PF06239_consen 108 FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINPW 174 (228)
T ss_pred HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCCC
Confidence 1111110 0034567888999999999999999999999988777642 3334456666666654
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.80 E-value=0.014 Score=58.34 Aligned_cols=132 Identities=12% Similarity=0.091 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCC-CCChh
Q 039931 498 AYNSLIAGFCNRGKLNEALKLEREMRQ----KGLL-PDNFTFNIIINGFCKQGRMKPAIDAFMDMYR----TGL-VPDIV 567 (783)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~ 567 (783)
.|..|.+.|.-.|+++.|+...+.-.. -|-. .....+..|.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666667888888776554221 1211 1234567778888888999999888876542 221 12345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 568 TYNTLIGGYCKALDIVRADELVNKMYAG-----GLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+..+|...|.-..++++|+.++.+-+.- ...-....|.+|..+|...|.-++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888888888888765431 1223457788899999999998888887766653
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.41 Score=45.49 Aligned_cols=130 Identities=9% Similarity=0.066 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH-----
Q 039931 429 FTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI----- 503 (783)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li----- 503 (783)
.+.++..+.-.|.+.-...++++..+...+.++.....+.+.-.+.|+.+.|...|++..+..-..|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344444444455555555555555555444455555555555555555555555555544332222222222221
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039931 504 AGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 504 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 559 (783)
..|.-.+++..|...+++....+.. |+..-|.-.-+..-.|+..+|++.++.|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2233344555555555555544322 333333332233334556666666666555
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.74 E-value=0.0061 Score=45.63 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=51.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 145 LFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 145 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
+...+.+.|++++|...|+++++..| .+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56778999999999999999999875 57889999999999999999999999999865
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.064 Score=52.36 Aligned_cols=129 Identities=11% Similarity=0.030 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CCcchHhhhccc
Q 039931 156 GSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIR-GQTSYALGKCGA 234 (783)
Q Consensus 156 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~ 234 (783)
+....-++.-++.+| -|...|-.|...|...|+++.|..-|.+..+.. ++|...+..+..++... |....+ +
T Consensus 139 ~~l~a~Le~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta-----~ 211 (287)
T COG4235 139 EALIARLETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTA-----K 211 (287)
T ss_pred HHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccH-----H
Confidence 334444566666666 788899999999999999999999999998764 46677777777666543 333333 3
Q ss_pred hHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 039931 235 GRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVS 294 (783)
Q Consensus 235 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 294 (783)
+..+|++....... |+.+-.-|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 212 a~~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 212 ARALLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 48899999886543 67777778889999999999999999999863 44455555554
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.69 E-value=0.38 Score=51.40 Aligned_cols=231 Identities=12% Similarity=0.118 Sum_probs=110.6
Q ss_pred CCHHhHHHHHHHHHhcCCcchHhhhc------cchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh--HHHHHHHHHH
Q 039931 207 ADFFAYNILINAYCIRGQTSYALGKC------GAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDID--QANMLYEEMR 278 (783)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~~~------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~ 278 (783)
+-.+.+.+-+--|...|.+++|.+.- ..-+.+-.+.. +.--++.-=++|.+..+.. +-+.-+++|+
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~AL------eAL~f~~ARkAY~rVRdl~~L~li~EL~~~k 627 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEAL------EALDFETARKAYIRVRDLRYLELISELEERK 627 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHH------hhhhhHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555566677788888885420 00011111111 1223344445555554432 3344456666
Q ss_pred hCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039931 279 SRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFA 358 (783)
Q Consensus 279 ~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 358 (783)
++|-.|+..... ..++-.|.+.+|-++|.+ +|.-..|+++|..|.-
T Consensus 628 ~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~----------------------~G~enRAlEmyTDlRM--------- 673 (1081)
T KOG1538|consen 628 KRGETPNDLLLA---DVFAYQGKFHEAAKLFKR----------------------SGHENRALEMYTDLRM--------- 673 (1081)
T ss_pred hcCCCchHHHHH---HHHHhhhhHHHHHHHHHH----------------------cCchhhHHHHHHHHHH---------
Confidence 777667665433 234445666666655433 4555555555555442
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH------HHHcCCC---CCHhhH
Q 039931 359 FNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCK------MIEKGFP---INKVAF 429 (783)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~------~~~~~~~---~~~~~~ 429 (783)
....+-|...|..++-..+.++-.+..- |..-=.+....+...|+.++|..+.-+ +.+.+.. .+..+.
T Consensus 674 -FD~aQE~~~~g~~~eKKmL~RKRA~WAr--~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l 750 (1081)
T KOG1538|consen 674 -FDYAQEFLGSGDPKEKKMLIRKRADWAR--NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPL 750 (1081)
T ss_pred -HHHHHHHhhcCChHHHHHHHHHHHHHhh--hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHH
Confidence 1234455555655555544443322210 000111233445556666666554321 1111111 123344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 430 TVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
..+...+-+...+.-|-++|..|.+. ..+++.....+++++|+.+-+...+
T Consensus 751 ~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 751 LLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 44444445555566666666665432 3345556666777777666665554
No 195
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.63 E-value=1 Score=46.41 Aligned_cols=153 Identities=12% Similarity=0.143 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039931 52 RSCCIAAHIFAAEDLRLLAQDVVTWVISRIGAGRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMR 131 (783)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 131 (783)
...|.-+.+|.+.+.+..+..+|+........+. ..+. .....+.++++|.-.+ .+.-........
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~--f~lk-----------eEvl~grilnAffl~n-ld~Me~~l~~l~ 72 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSP--FLLK-----------EEVLGGRILNAFFLNN-LDLMEKQLMELR 72 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcch--HHHH-----------HHHHhhHHHHHHHHhh-HHHHHHHHHHHH
Confidence 3567777888888887778777776554332211 1110 1234566777776544 333333333333
Q ss_pred HCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhc--CCC------------CCHHHHHHHHHHHHhcCChhhHHH
Q 039931 132 EVGIMPSESAITILFKSL--LRVGDYGSVWKLFRDMIHL--GPR------------PSNYTFNALILGFCRNGCIRIGES 195 (783)
Q Consensus 132 ~~g~~~~~~~~~~ll~~l--~~~g~~~~A~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~A~~ 195 (783)
+.. | ...|-.|..++ -+.+.+..|.+.+...... +.. +|-..=+..++++...|++.+++.
T Consensus 73 ~~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~ 149 (549)
T PF07079_consen 73 QQF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRA 149 (549)
T ss_pred Hhc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHH
Confidence 321 2 23344444443 4678888888887766544 221 122334566788889999999998
Q ss_pred HHHHHHhC----CCCCCHHhHHHHHHHHHh
Q 039931 196 LLHVMHKY----MCVADFFAYNILINAYCI 221 (783)
Q Consensus 196 ~~~~m~~~----g~~~~~~~~~~li~~~~~ 221 (783)
++++|... .+..++.+|+.++-++++
T Consensus 150 iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 150 ILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 88887643 345788888887777764
No 196
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.63 E-value=1.4 Score=47.82 Aligned_cols=199 Identities=14% Similarity=0.083 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH------------HHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYT------------FNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
.|.+..|..|...-+..-.++.|...|-+... -+.... -.+=+.+| -|++++|.+++-.|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh
Confidence 47778888877776666666666666544321 111111 11111111 36677777666655543
Q ss_pred CCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 204 MCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPN----VVVYNALLNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 204 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 279 (783)
. ..|..+-+.|++- ++++-+...|-..| ..+|+.+...+.....+++|.+.|..-..
T Consensus 764 D---------LAielr~klgDwf----------rV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 764 D---------LAIELRKKLGDWF----------RVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred h---------hhHHHHHhhhhHH----------HHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 1233333444432 23332222111111 23566666666666666666666654321
Q ss_pred CCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 280 RDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAF 359 (783)
Q Consensus 280 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 359 (783)
. ...+.++.+..++++-+.+-+.+ +.+....-.+..++...|.-++|.+.|-+-.. |
T Consensus 825 ------~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p----- 881 (1189)
T KOG2041|consen 825 ------T---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P----- 881 (1189)
T ss_pred ------h---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----
Confidence 1 12334444444444433333332 22444455566667777777777666543321 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 039931 360 NSIIAAYSRAGLEENAFEAYKI 381 (783)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~ 381 (783)
-..+..|...+++.+|.++-+.
T Consensus 882 kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 882 KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 1233455555666666655544
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.63 E-value=0.12 Score=43.83 Aligned_cols=55 Identities=31% Similarity=0.316 Sum_probs=22.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 039931 365 AYSRAGLEENAFEAYKIMHQFGLTPS--SCTCSSLLVGLCKKGRLPEAWDLLCKMIE 419 (783)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 419 (783)
++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444443322 11223333344444444444444444443
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.59 E-value=0.52 Score=42.39 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 039931 528 LPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP---DITTY 604 (783)
Q Consensus 528 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~ 604 (783)
.|++..--.|..++...|+..+|...|++...--+--|......+.++....+++.+|...++++-+.. | ++.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 455555556666666667777776666666643333456666666666666666777766666666532 2 12233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 605 NIRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 605 ~~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
-.+.+.|...|++.+|...|+..++.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 34456666667777777777666654
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.54 Score=44.72 Aligned_cols=141 Identities=19% Similarity=0.109 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 039931 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAY----- 467 (783)
Q Consensus 393 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l----- 467 (783)
..+.++..+...|.+.-....++++++...+.++.....|++.-.+.||.+.|...|+...+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344566666677777778888888888776777888888888888888888888888876654322333333333
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 468 INGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNI 536 (783)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 536 (783)
...+.-.+++..|...+.++.... +.|+...|.-.-+..-.|+..+|++.++.|.+.. |...+-++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhhh
Confidence 234556677888888888877653 3344444544444445688888999998888863 44444343
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.54 E-value=0.32 Score=46.31 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=27.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 039931 399 VGLCKKGRLPEAWDLLCKMIEKGF--PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR 455 (783)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 455 (783)
..+...|++.+|.+.|+.+...-+ +--....-.++.++.+.|+++.|...+++..+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555421 112223344455555566666666666555544
No 201
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.54 E-value=1.2 Score=45.90 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH-HHHH
Q 039931 496 NFAYNSLIAGFCNRGKLNEALKLEREMRQKG-LLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTY-NTLI 573 (783)
Q Consensus 496 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li 573 (783)
..+|...++...+..-++.|..+|-+..+.+ ..+++..++++|..++ .|+..-|..+|+--+.. -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3455666666666666777777887777776 4567777777776655 56677777777765554 3444433 3445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDPD--ITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.-+...++-+.|..+|+..+++ +..+ ...|..+|+--..-|++..+..+=+.|.+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 5556677777777777765542 2222 35677777777777777777777666665
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.50 E-value=0.0089 Score=45.18 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=24.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 543 KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+.|++++|++.|+++.... +-+...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555554431 11344444455555555555555555555544
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.45 E-value=0.36 Score=45.96 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=30.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISP--SIFAFNSIIAAYSRAGLEENAFEAYKIMHQF 385 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (783)
+...|++.+|.+.|+++....+.. -......++.++.+.|+++.|...++...+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667777777777766642221 1233445566666677777777777666554
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.42 E-value=0.013 Score=45.08 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=34.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 112 HGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
..|.+.+++++|++++++++..+ +.+...|......+.+.|++++|.+.|++.++.+|
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34555666666666666666654 34555555566666666666666666666665543
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.16 E-value=0.03 Score=42.98 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=52.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 039931 146 FKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 146 l~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
-..+.+.++++.|+++++.++..+| .+...+.....++...|++++|.+.|++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3568899999999999999999977 588889999999999999999999999999875
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.13 E-value=0.015 Score=39.32 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHH
Q 039931 672 TTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDR 713 (783)
Q Consensus 672 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~ 713 (783)
+|..+...|...|++++|+++++++++..|+ |..+|..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhhh
Confidence 6778888999999999999999999999998 8888877764
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.04 E-value=0.3 Score=43.58 Aligned_cols=69 Identities=20% Similarity=0.319 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 039931 324 YDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQ-----FGLTPSSCT 393 (783)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 393 (783)
...++..+...|++++|..+.+.+....+- |...|..+|.+|...|+..+|.+.|+.+.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555666777777777777777776444 667777777777777777777777776632 366666554
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.00 E-value=1.1 Score=40.32 Aligned_cols=126 Identities=16% Similarity=0.107 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHhhHHHH
Q 039931 354 PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFP-INKVAFTVL 432 (783)
Q Consensus 354 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l 432 (783)
|++..-..|..+..+.|+..+|...|++...--+.-|......+.++....+++..|...++++.+.... -++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4444445555556666666666666665554333334445555555555566666666666655554210 012223334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 039931 433 LDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 481 (783)
...+...|++.+|+.-|+..... .|+...-......+.+.|+.+++.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 44555555555555555555543 223322222333344445444433
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.99 E-value=0.12 Score=51.04 Aligned_cols=92 Identities=14% Similarity=0.032 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDI----VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD----ITTYN 605 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~ 605 (783)
|...+..+.+.|++++|...|+.+++. .|+. ..+.-+...|...|++++|...|+.+.+. .|+ ...+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHH
Confidence 333333334445555555555555543 2332 24444555555556666666666555542 122 23333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 606 IRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 606 ~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.++.++...|+.++|...|+++++
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555666666666665554
No 210
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.99 E-value=2.2 Score=43.56 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=24.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 039931 425 NKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLE 486 (783)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 486 (783)
+...|-..+.+++..++|++-.++-.. ++ +++-|..++..|.+.|+..+|..+...
T Consensus 207 dkrfw~lki~aLa~~~~w~eL~~fa~s--kK----sPIGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 207 DKRFWWLKIKALAENKDWDELEKFAKS--KK----SPIGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhC--CC----CCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence 444444444444444444443333221 11 234444444455555554444444433
No 211
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.97 E-value=2.4 Score=43.90 Aligned_cols=187 Identities=10% Similarity=0.026 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhC---CCCCcHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSR----DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVS---GLLPNCT 322 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 322 (783)
|...=+..++.+...|++.+++.++++|..+ ...-+..+|+.++-.+.+ ..|-++.+. ++-|+
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd-- 196 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPD-- 196 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChH--
Confidence 4445566778889999999999999988764 344678888875554433 233333222 22222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHH-HHHHHH
Q 039931 323 LYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAG--LEENAFEAYKIMHQFGLTPSSCT-CSSLLV 399 (783)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~-~~~li~ 399 (783)
|--++-.|.+.=. .++.-.-..+.|.......++....-.. +..--.++++.....-+.|+... ...+..
T Consensus 197 -yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~ 269 (549)
T PF07079_consen 197 -YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQ 269 (549)
T ss_pred -HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 2233333432211 1111111112233333333332222111 11112233333333334454322 233333
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 039931 400 GLCKKGRLPEAWDLLCKMIEKGFP----INKVAFTVLLDGYFRIGDLIGAQSLWNELNRR 455 (783)
Q Consensus 400 ~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 455 (783)
.+.+ +.+++..+-+.+....+. -=..++..++....+.++...|...+.-+...
T Consensus 270 ~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 270 QFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3333 444444444443332111 02345677777777788888887777766554
No 212
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.92 E-value=2.3 Score=43.13 Aligned_cols=253 Identities=17% Similarity=0.085 Sum_probs=139.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 039931 368 RAGLEENAFEAYKIMHQFGLTPSSCT----CSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLI 443 (783)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 443 (783)
-.|+++.|.+-|+.|.. |..| ...|.-...+.|+.+.|.++-+...+.-.. -...+...+...|..|+++
T Consensus 132 ~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWD 205 (531)
T ss_pred hcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChH
Confidence 35666667666666664 2222 222222334567777777766666555322 3455666777777777777
Q ss_pred HHHHHHHHHHhCC-CCCCHHH--HHHHHHHH---HccCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 039931 444 GAQSLWNELNRRK-IFPDAVA--FSAYINGL---SKAGLVDEAYGVFLEMSRIGFVPNNFAY-NSLIAGFCNRGKLNEAL 516 (783)
Q Consensus 444 ~A~~~~~~~~~~~-~~p~~~~--~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~ 516 (783)
.|+++.+.-.... +.+++.- -..|+.+- .-.-+...|...-.+..+ +.||.+.- ..-..++.+.|++.++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 7777776654432 2223221 11111111 011234445544444444 34554432 22345677888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 517 KLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT-GLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 517 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.+++.+-+..+.|+. +. +..+.+.|+. ++.-+++..+. .++| +..+...+..+-...|++..|..--+....
T Consensus 284 ~ilE~aWK~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 284 KILETAWKAEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred hHHHHHHhcCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 888888877444433 22 2233445543 33222222210 1344 455666667777778888877776666665
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCH
Q 039931 595 GGLDPDITTYNIRMHGYCNI-RKMNQAAMMLDELVSAGIVPNT 636 (783)
Q Consensus 595 ~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~ 636 (783)
..|....|..|.+.-... |+-.++...+.+.++..-.|+.
T Consensus 358 --~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 358 --EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred --hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 467777777777665444 8888888877777765555543
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.90 E-value=1.6 Score=45.09 Aligned_cols=173 Identities=14% Similarity=0.095 Sum_probs=86.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 039931 502 LIAGFCNRGKLNEALKLEREMRQKG---LLPDNFTFNIIINGFCK---QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGG 575 (783)
Q Consensus 502 li~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 575 (783)
++-.|....+++..+++.+.+.... +.-+...--...-++.+ .|+.++|++++..++...-.++..+|..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334666677777777777666541 11122222233444555 67777777777765544445666666665555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhh--cc
Q 039931 576 YCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT---VTYNTLMNGVCC--DI 650 (783)
Q Consensus 576 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~--~~ 650 (783)
|-.. | .+.+. -|.. ..++|+..|.+.-+ +.||. +.+.+|+..... ..
T Consensus 227 yKD~---------~---~~s~~-~d~~-------------~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 227 YKDL---------F---LESNF-TDRE-------------SLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHH---------H---HHcCc-cchH-------------HHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccc
Confidence 4211 0 01110 1111 14555555554432 22332 122222221111 01
Q ss_pred HHHHHHHH----HHHHHcCC-C--CCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 651 LDRAIIIA----AKLLKMAF-V--PNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 651 ~~~A~~~~----~~~~~~~~-~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
-.+..++. ....+.|. . .|-..+.+++.++.-.|++++|.++++++.++.|+
T Consensus 279 ~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 279 SEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 11111111 11222332 2 34455677888889999999999999999988754
No 214
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.84 E-value=3.4 Score=44.53 Aligned_cols=412 Identities=10% Similarity=0.029 Sum_probs=200.9
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhH-HHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVT-FNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITV 328 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 328 (783)
+...|+++|.---...+.+.+..++..++.. -|.... |.-....=.+.|..+.+.++|++.+.. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3445666665444445556666666666644 344433 333334445567777777777776653 334444555444
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---
Q 039931 329 AGLC-WAGRLDEAMEFFEDMFEK-GIS-PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLC--- 402 (783)
Q Consensus 329 ~~~~-~~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--- 402 (783)
..++ ..|+.+.....|+...+. |.. .+...|...|.--...+++.....+|+..++.- ...|+.....|.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHH
Confidence 4333 345666666666666552 211 134456666666666777777777777776531 122222222221
Q ss_pred hc------CChhHHHHHHHHHHHc---CC-CCCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 403 KK------GRLPEAWDLLCKMIEK---GF-PINKVAFTVLLDGYF-RIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGL 471 (783)
Q Consensus 403 ~~------g~~~~a~~~~~~~~~~---~~-~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 471 (783)
.. -..+++.++-...... .. .........-+.--. ..+..+++..+..+... .--..+
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~ 265 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVY 265 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHH
Confidence 11 1122332222222211 00 000111111111000 01111122211111111 011122
Q ss_pred HccCChHHHHHHHHHHHhCC---C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 472 SKAGLVDEAYGVFLEMSRIG---F----VPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQ 544 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~---~----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 544 (783)
...-...+....|+.-.+.- + .++..+|..-++--.+.|+.+.+.-+|+...-- +..-...|--.+.-....
T Consensus 266 ~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~ 344 (577)
T KOG1258|consen 266 QKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESS 344 (577)
T ss_pred HhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHc
Confidence 22223333333344333321 1 234567777777778888888888888876532 111233444455555556
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH-
Q 039931 545 GRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGY-CKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRKMNQAA- 621 (783)
Q Consensus 545 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~- 621 (783)
|+.+-|..++....+--+ |+......+-..+ -..|++..|..+++...+. + |+. ..-..-+....+.|+.+.+.
T Consensus 345 ~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 345 GDVSLANNVLARACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred CchhHHHHHHHhhhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhH
Confidence 888888877776665432 3332222222333 3467999999999998874 3 654 33334456667778888877
Q ss_pred --HHHHHHHHCCCCCCHHH--HHHH--HHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 039931 622 --MMLDELVSAGIVPNTVT--YNTL--MNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQG 684 (783)
Q Consensus 622 --~~~~~m~~~g~~p~~~~--~~~l--i~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 684 (783)
.++....+.-..+.... +.-. ....++++.+.|..++.++.+. ..++...|..+++-....+
T Consensus 422 ~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 422 KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 44433332111111111 1111 1122346778888888888773 3345566777776554444
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.78 E-value=0.2 Score=49.54 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=37.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHHcC
Q 039931 507 CNRGKLNEALKLEREMRQKGLLPD--NFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPD----IVTYNTLIGGYCKAL 580 (783)
Q Consensus 507 ~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g 580 (783)
.+.|++++|...|+.+.+..+... +..+--+...|...|++++|...|+.+.+. .|+ ...+..+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcC
Confidence 334445555555554444322110 123333444455555555555555555432 121 223333344444555
Q ss_pred CHHHHHHHHHHHHH
Q 039931 581 DIVRADELVNKMYA 594 (783)
Q Consensus 581 ~~~~A~~~~~~m~~ 594 (783)
+.++|.++++++++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555554
No 216
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=4.7 Score=45.19 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSE--SAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
....-+...++...++.|..+-..- +..++. ........-+.+.|++++|...|-+.+.. .+|. .++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 3556666777788888888776542 222221 12333455567889999999888777543 2222 24555
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVK 263 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 263 (783)
|....+..+-..+++.+.+.|. .+..--..|+..|.+.++.++- .+..+... .|.. ..-....+..+.+
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL-------~efI~~~~-~g~~--~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKL-------TEFISKCD-KGEW--FFDVETALEILRK 475 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHH-------HHHHhcCC-Ccce--eeeHHHHHHHHHH
Confidence 6666666677777888888875 4555556788888888877654 22222111 1110 1123345555556
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDL 312 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 312 (783)
.+-.++|..+-..... +......++ -..+++++|.+.+..+
T Consensus 476 snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 6666666655544332 233333333 2456777777777654
No 217
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.63 E-value=4.1 Score=43.96 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSR 280 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 280 (783)
....|...|..-..++++.....+|++.++.
T Consensus 150 S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 150 SDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred ccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 3345666666666777777777788777764
No 218
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.61 E-value=3.1 Score=42.45 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 039931 253 VYNALLNGYVKARDIDQANMLYE 275 (783)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~ 275 (783)
+|..+...-...|+.+-|..+++
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH
Confidence 45666666677788887777665
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.52 E-value=0.13 Score=46.06 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCCHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIH-----LGPRPSNYT 176 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 176 (783)
+...++..+...|++++|....+.++..+ +-+...|..++.+|.+.|+...|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 45556666666777777777777766665 45666666777777777777777776666643 255555543
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=95.47 E-value=0.14 Score=45.41 Aligned_cols=94 Identities=6% Similarity=-0.142 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (783)
.-....-+...|++++|..+|.-+...++ -+..-|..|...+-..+++++|+..|......++ .|+..+-....++..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHH
Confidence 33455566789999999999999888874 5667788899999999999999999998887764 556666778899999
Q ss_pred cCChhhHHHHHHHHHh
Q 039931 187 NGCIRIGESLLHVMHK 202 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~ 202 (783)
.|+.+.|+..|+....
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 9999999999998876
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.36 E-value=1.2 Score=47.90 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 039931 107 LDALLHGYLRVEMS--AEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDM 165 (783)
Q Consensus 107 ~~~l~~~~~~~g~~--~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~ 165 (783)
++.--.+|.+-.+. -+-.--++++.++|-.|+.. .+...+.-+|+|.+|.++|.+-
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHc
Confidence 34444555554433 23334456677777656654 3344566677777777777553
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.25 E-value=0.63 Score=40.43 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHhhccHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHH
Q 039931 634 PNTVTYNTLMNGVCCDILDRAIIIAAKLLKM-AFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIM 711 (783)
Q Consensus 634 p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l 711 (783)
|....|..-...+-+|++++|.+.|+.+... +..| ....-..++.+|.+.|++++|+..+++.++++|....+-|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3346677777777778999999999888763 2223 2245567888999999999999999999999988444556555
Q ss_pred HHHHhhh
Q 039931 712 DRAYHNI 718 (783)
Q Consensus 712 ~~~y~~~ 718 (783)
..+++..
T Consensus 89 ~~gL~~~ 95 (142)
T PF13512_consen 89 MRGLSYY 95 (142)
T ss_pred HHHHHHH
Confidence 6565543
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.5 Score=48.15 Aligned_cols=84 Identities=14% Similarity=-0.009 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQET 728 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~ 728 (783)
+.+.+|++...+.++.. ++|.....-=..+|...|+++.|+..+++++++.|. |-.+-.-|+..-.+..+..+.-+++
T Consensus 271 ~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999998843 345566666777899999999999999999999987 6655555554433334444444555
Q ss_pred HhcCCC
Q 039931 729 SEKSLF 734 (783)
Q Consensus 729 ~~~~~~ 734 (783)
+.+++.
T Consensus 349 y~~mF~ 354 (397)
T KOG0543|consen 349 YANMFA 354 (397)
T ss_pred HHHHhh
Confidence 555443
No 224
>PRK11906 transcriptional regulator; Provisional
Probab=95.14 E-value=1.3 Score=46.55 Aligned_cols=109 Identities=14% Similarity=0.053 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 547 MKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRKMNQAAMMLD 625 (783)
Q Consensus 547 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~ 625 (783)
..+|.++-+..++.+ +-|......+..+....++++.|..+|++... +.||. .+|......+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555555555543 33555555555555566666777777776665 45543 445555555666667777776666
Q ss_pred HHHHCCCCCCH---HHHHHHHHHHhhccHHHHHHHHHH
Q 039931 626 ELVSAGIVPNT---VTYNTLMNGVCCDILDRAIIIAAK 660 (783)
Q Consensus 626 ~m~~~g~~p~~---~~~~~li~~~~~~~~~~A~~~~~~ 660 (783)
+.++ ..|.. ......++.||...+++|++++-+
T Consensus 397 ~alr--LsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQ--LEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHhc--cCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 6544 23332 222233334555556666666544
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=95.09 E-value=1.7 Score=38.72 Aligned_cols=86 Identities=12% Similarity=-0.038 Sum_probs=45.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 039931 507 CNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRAD 586 (783)
Q Consensus 507 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 586 (783)
...|++++|..+|.-+...++- +..-|..|..++-..+++++|+..|......+ .-|+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 3556666666666655554333 44445555555555566666666655544332 123333444455555556666666
Q ss_pred HHHHHHHH
Q 039931 587 ELVNKMYA 594 (783)
Q Consensus 587 ~~~~~m~~ 594 (783)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 65555554
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.06 E-value=0.26 Score=51.34 Aligned_cols=68 Identities=6% Similarity=-0.170 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSE---SAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
.|.++..++.+..+|.+.|++++|+..|++.++.+. .+. .+|+.+..+|...|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNP-NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355678999999999999999999999999999862 223 45999999999999999999999999885
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.02 E-value=0.031 Score=43.60 Aligned_cols=67 Identities=24% Similarity=0.287 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 211 AYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPN-VVVYNALLNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 279 (783)
+++.+...|...|++++|+..++++.++.+..... .|+ ..+++.+...|...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555666666666655555555553333211 122 56888899999999999999999988754
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.96 E-value=0.25 Score=51.51 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN--YTFNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
+.+...|+.+..+|.+.|++++|+..|++.++.+|.... .+|..+..+|...|+.++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567788999999999999999999999999998764332 46999999999999999999999999875
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.94 E-value=0.087 Score=41.01 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 568 TYNTLIGGYCKALDIVRADELVNKMYAG--GLD---PD-ITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
+|+.+...|...|++++|++.+++..+. ... |+ ..+++.+..+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444431 011 11 2344555555555555555555555543
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.91 E-value=0.43 Score=40.97 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMH 609 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 609 (783)
|..++..+|.++++.|+++....+++..- |+.++... ..+. .-....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566777777777777777776665543 22222110 0000 1112356788888889999
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 039931 610 GYCNIRKMNQAAMMLDELVS-AGIVPNTVTYNTLMNG 645 (783)
Q Consensus 610 ~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~ 645 (783)
+|+..|++..|+++++...+ .++.-+..+|..|+.-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999888874 7777777788887764
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.90 E-value=0.048 Score=45.50 Aligned_cols=49 Identities=24% Similarity=0.142 Sum_probs=23.1
Q ss_pred ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 039931 649 DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEI 699 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 699 (783)
+.++.|++.|.+.+. +-| +...||.-..++.-.|+.++|+.-+++++++
T Consensus 57 g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 57 GDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred cchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 444555555544444 222 2344444444555555555555555555443
No 232
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.87 E-value=0.39 Score=41.25 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHH
Q 039931 527 LLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT-GLVPDIVTYNTLIGGY 576 (783)
Q Consensus 527 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~ 576 (783)
..|+..+..+++.+|+..|++..|+++.+...+. +++-+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4555666666666666666666666655555432 3444455555555543
No 233
>PRK11906 transcriptional regulator; Provisional
Probab=94.79 E-value=0.85 Score=47.78 Aligned_cols=132 Identities=11% Similarity=0.037 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhc---C------CHHHHHHHHHHHHHCCCCCCH-H--HHHHHHHHH
Q 039931 581 DIVRADELVNKMYA-GGLDPDI-TTYNIRMHGYCNI---R------KMNQAAMMLDELVSAGIVPNT-V--TYNTLMNGV 646 (783)
Q Consensus 581 ~~~~A~~~~~~m~~-~g~~p~~-~~~~~li~~~~~~---g------~~~~A~~~~~~m~~~g~~p~~-~--~~~~li~~~ 646 (783)
..+.|..+|.+... ..+.|+. ..|..+..++... | ...+|.++-++..+. .|+. . +...++.++
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence 35667778888772 2355654 4555555544332 1 233455555555542 2222 2 222222232
Q ss_pred hhccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCH-HHHHHHHHHHhh
Q 039931 647 CCDILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDE-TSYKIMDRAYHN 717 (783)
Q Consensus 647 ~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~-~~~~~l~~~y~~ 717 (783)
. +.++.|..+|++... +.||. .+|....-.+.-.|+.++|.+.+++++++.|-.-. +....-++.|+-
T Consensus 351 ~-~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~ 420 (458)
T PRK11906 351 S-GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP 420 (458)
T ss_pred h-cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC
Confidence 2 447777777777776 45655 44444444456677777777777777777765222 233334445653
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.60 E-value=5.5 Score=41.20 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=44.6
Q ss_pred HHHccCChhHHHHHHHHHHhCC---CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 039931 295 GHCKYGGMEDGDRLLRDLSVSG---LLPNCTLYDITVAGLCW---AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR 368 (783)
Q Consensus 295 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 368 (783)
+|....+++...++.+.+.... +.....+--...-++.+ .|+.++|.+++..+......++..+|..+.+.|-+
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 4555555555555555554431 11111111122223344 66777777777665554455566666666655532
Q ss_pred c---------CCHHHHHHHHHHHHh
Q 039931 369 A---------GLEENAFEAYKIMHQ 384 (783)
Q Consensus 369 ~---------g~~~~A~~~~~~m~~ 384 (783)
. ...++|++.|.+.-+
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHc
Confidence 1 124556666655444
No 235
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=9.9 Score=42.22 Aligned_cols=79 Identities=10% Similarity=0.060 Sum_probs=36.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKM 617 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 617 (783)
+.-+...|+..+|.++-.+.. -||...|.--+.+++..+++++-+++-+.+.. +.-|.-.+.+|.+.|+.
T Consensus 691 v~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccH
Confidence 334444455555554444332 24445555455555555555544444333221 22333444455555555
Q ss_pred HHHHHHHHH
Q 039931 618 NQAAMMLDE 626 (783)
Q Consensus 618 ~~A~~~~~~ 626 (783)
++|.+++-+
T Consensus 761 ~EA~KYipr 769 (829)
T KOG2280|consen 761 DEAKKYIPR 769 (829)
T ss_pred HHHhhhhhc
Confidence 555555444
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.54 Score=47.91 Aligned_cols=126 Identities=9% Similarity=-0.024 Sum_probs=89.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC-----CCCC---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 039931 111 LHGYLRVEMSAEVMEILYRMREV-----GIMP---------SESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYT 176 (783)
Q Consensus 111 ~~~~~~~g~~~~A~~~~~~~~~~-----g~~~---------~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 176 (783)
-+.|.+.|++..|..-|+++... ++.+ -..+++.|.-.+.+.+++..|++.-+.++..++ +|+-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhH
Confidence 34788899999999988875443 1111 123466677888999999999999999999876 78888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHH
Q 039931 177 FNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
..--.+++...|+++.|+..|+++++.. +.|-.+-+.|+..--+..+..+. .+++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~k------ekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEK------EKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhh
Confidence 8888999999999999999999999874 33444444554444333333222 1455555543
No 237
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.24 E-value=6.8 Score=39.40 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCcchHhhhccchHHHHHH-HHHCCCCCCh-----HHHHHHHHHHHhcCChh---HHHHHHHHHHhCCC
Q 039931 212 YNILINAYCIRGQTSYALGKCGAGRMIFDM-IQEEGLSPNV-----VVYNALLNGYVKARDID---QANMLYEEMRSRDI 282 (783)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~a~~~~~~-m~~~g~~p~~-----~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~ 282 (783)
|+.-...+.+..++++|..++++|.++++. -......|+. .+...++.+|...+..+ +|.++.+.+.....
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~ 118 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG 118 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC
Confidence 444344443333888888777777777765 2222233443 45666777887776654 56666666654422
Q ss_pred CCCHhHHHHHHHHHHccCChhHHHHHHHHHHhC
Q 039931 283 APDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVS 315 (783)
Q Consensus 283 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 315 (783)
. .+..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 119 ~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 119 N-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred C-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2 2445555566666678888888888888775
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=3.5 Score=40.46 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=92.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 039931 145 LFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQ 224 (783)
Q Consensus 145 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (783)
-...+...|++.+|...|.......+. +...--.+..+|...|+.+.|..++..+...--.........-|..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 334456778888888888888777653 3445566778888888888888888877543211112222233444555444
Q ss_pred cchHhhhccchHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhHHHHHHHHHHccCC
Q 039931 225 TSYALGKCGAGRMIFDMIQEEGLSP-NVVVYNALLNGYVKARDIDQANMLYEEMRSR--DIAPDAVTFNIIVSGHCKYGG 301 (783)
Q Consensus 225 ~~~A~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~ 301 (783)
..+. ..+-.+.-. .| |...-..+...+...|+.++|++.+-.+.++ |.. |...-..++..+.-.|.
T Consensus 219 ~~~~-------~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 219 TPEI-------QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred CCCH-------HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 4433 223333322 24 6677777888888888888888877666654 333 56667777777777775
Q ss_pred hhHH
Q 039931 302 MEDG 305 (783)
Q Consensus 302 ~~~A 305 (783)
.+.+
T Consensus 288 ~Dp~ 291 (304)
T COG3118 288 ADPL 291 (304)
T ss_pred CCHH
Confidence 4443
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.16 E-value=4.6 Score=44.01 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHc--CC-CCChhHHHHHHHHHHHcCCHHHH
Q 039931 510 GKLNEALKLEREMRQKGLLPDNFTFNII-INGFCKQGRMKPAIDAFMDMYRT--GL-VPDIVTYNTLIGGYCKALDIVRA 585 (783)
Q Consensus 510 g~~~~A~~l~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~--g~-~p~~~~~~~li~~~~~~g~~~~A 585 (783)
...+.|.++++.+.++ -|+...|... ...+...|++++|++.|++.... .. +.....+--+...+...+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455666666666655 3444443322 23344566666666666654421 00 01122333444445555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCH-------HHHHHHHHHH
Q 039931 586 DELVNKMYAGGLDPDITTYNIRM-HGYCNIRKM-------NQAAMMLDEL 627 (783)
Q Consensus 586 ~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~-------~~A~~~~~~m 627 (783)
.+.|..+.+.. ..+..+|..+. .++...|+. ++|.++|.+.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 66666666532 22333333332 333344544 5555555544
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.03 E-value=3.4 Score=35.11 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=64.0
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHH
Q 039931 473 KAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFT---FNIIINGFCKQGRMKP 549 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~ 549 (783)
-.|.+++..++..+...+ .+..-||.+|--....-+-+-..+.++.+-+- -|... ...++.+|++.|.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc---
Confidence 356667777777766653 34445555554433333333333333333221 12111 1122333333222
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 550 AIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 550 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+.......++...+.|+-+.-.++...+.+. -.+++.....+..+|.+.|+..++.+++.+.-+
T Consensus 85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 2333444555566667777777777666542 256666666777777777777777777777666
Q ss_pred CCC
Q 039931 630 AGI 632 (783)
Q Consensus 630 ~g~ 632 (783)
.|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 664
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.95 E-value=3.6 Score=36.24 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=6.6
Q ss_pred HHHHhcCCHHHHHHHHH
Q 039931 609 HGYCNIRKMNQAAMMLD 625 (783)
Q Consensus 609 ~~~~~~g~~~~A~~~~~ 625 (783)
..|.+.+.++++.-++.
T Consensus 77 ~~c~~~~l~~~~~~l~~ 93 (140)
T smart00299 77 KLCEKAKLYEEAVELYK 93 (140)
T ss_pred HHHHHcCcHHHHHHHHH
Confidence 33333333333333333
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.93 E-value=0.17 Score=34.05 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITIL 145 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 145 (783)
++..+..+|.+.|++++|.++|+++++.. +.+...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45555666666666666666666666554 3444444433
No 243
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.84 E-value=16 Score=42.97 Aligned_cols=28 Identities=7% Similarity=0.160 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 039931 322 TLYDITVAGLCWAG--RLDEAMEFFEDMFE 349 (783)
Q Consensus 322 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 349 (783)
.....+|..|.+.+ .+++|++...+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 33445566666665 56666665555543
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.81 E-value=4.9 Score=42.45 Aligned_cols=61 Identities=7% Similarity=-0.027 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 567 VTYNTLIGGYCKALDIVRADELVNKMYAGG-LDPDITTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
.+-..|..++.+.|+.+||++.+.+|.+.. ...+......|+.++...+.+.++..++.+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333456666667888888888888887632 1112345667788888888888888887775
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=7.7 Score=38.19 Aligned_cols=121 Identities=18% Similarity=0.075 Sum_probs=60.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEA 410 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 410 (783)
....|++.+|..+|+.......+ +...--.++..|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 44556666666666666654333 34445556666666666666666666654332111112222223334444444444
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 411 WDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
..+-.++-.. +-|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333322 22455555556666666666666665554444
No 246
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.62 E-value=16 Score=43.00 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=9.1
Q ss_pred HHHHccCChHHHHHHHHHH
Q 039931 469 NGLSKAGLVDEAYGVFLEM 487 (783)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~m 487 (783)
.+|..+|++.+|+.+..++
T Consensus 973 ~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHHhccHHHHHHHHHhh
Confidence 3444445555555544444
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.60 E-value=8.9 Score=38.55 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=62.1
Q ss_pred HhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHH
Q 039931 210 FAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTF 289 (783)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 289 (783)
.+...++.+|...+..+.. ..+.++++.+...... .+..+-.-+..+.+.++.+++.+.+.+|... +.-....+
T Consensus 85 ~iL~~La~~~l~~~~~~~~----~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~ 158 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESV----EKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHcCCChHHH----HHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchH
Confidence 4667778888777776654 3456777777544322 2455556667777789999999999999986 22133445
Q ss_pred HHHHHHH---HccCChhHHHHHHHHHHhCCCCC
Q 039931 290 NIIVSGH---CKYGGMEDGDRLLRDLSVSGLLP 319 (783)
Q Consensus 290 ~~ll~~~---~~~g~~~~A~~~~~~~~~~~~~~ 319 (783)
..++..+ .. .....+...+..+....+.|
T Consensus 159 ~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 159 DSILHHIKQLAE-KSPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCC
Confidence 5444443 33 23344555555555443333
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.58 E-value=7.4 Score=37.55 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=36.1
Q ss_pred HhcCChhHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 402 CKKGRLPEAWDLLCKMIEKGF--PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLS 472 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 472 (783)
.+.|++++|.+.|+.+....+ +-...+.-.++-++.+.++++.|+..+++..+..+...-..|-..|.+++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 455666666666666654421 11233344445555666666666666666655433323333444444443
No 249
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.50 E-value=11 Score=39.24 Aligned_cols=145 Identities=17% Similarity=0.241 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTG-LVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTY-NIR 607 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l 607 (783)
-...|...++.-.+..-++.|..+|.++.+.| +.+++..+++++..++ .|+...|.++|+--.. ..||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHH
Confidence 45567778888888888889999999988887 6678888888888775 5688888888887665 25666554 445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039931 608 MHGYCNIRKMNQAAMMLDELVSAGIVPN--TVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHF 680 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 680 (783)
+.-+...++-+.|..+|+...++ +..+ ...|..+|+.-.. |.+..+..+-+++.+ ..|-..+-....+.|
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 66777888888888888865532 2222 2456666654333 667667766666666 445443333333333
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.47 E-value=7.4 Score=37.24 Aligned_cols=62 Identities=18% Similarity=0.059 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 428 AFTVLLDGYFRIGDLIGAQSLWNELNRR-KIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
.+......+...+++..+...+...... ........+......+...+....+.+.+.....
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3344444444444444444444444321 1111233333333444444444444444444443
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.46 E-value=5.3 Score=43.54 Aligned_cols=47 Identities=26% Similarity=0.262 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 039931 335 GRLDEAMEFFEDMFEKGISPSIFAFNSI-IAAYSRAGLEENAFEAYKIMH 383 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~ 383 (783)
...+.|.++++.+..+ -|+...|... .+.+...|++++|++.|+...
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 4566667777766664 3344433332 344555666777776666544
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.42 E-value=3.7 Score=36.17 Aligned_cols=40 Identities=20% Similarity=0.109 Sum_probs=16.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR 438 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 438 (783)
+..+...+.......+++.+...+. .+....+.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 3333333444444444444444332 233444444444443
No 253
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.39 E-value=4.4 Score=34.42 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 039931 500 NSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGL 562 (783)
Q Consensus 500 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 562 (783)
...++...+.|+-+.-.++..++.+. -.+++...-.+..+|.+.|+..++.+++.++.+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555556666666666555542 244555555666666666666666666666665553
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.14 E-value=1.9 Score=46.24 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=63.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFC 542 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 542 (783)
..+.++..+.+.|..+.|+.+-.+-.. -.....+.|+++.|.++.++ .++...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 355555556666666666554432211 12334456666666554322 225556666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039931 543 KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAM 622 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 622 (783)
+.|+++-|.+.|.+... |..|+-.|...|+.+.-.++.+.....|- ++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 66666666666655321 34445555556666555555555554331 3333444444455555555
Q ss_pred HHH
Q 039931 623 MLD 625 (783)
Q Consensus 623 ~~~ 625 (783)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.12 E-value=1.3 Score=47.42 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 039931 253 VYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLC 332 (783)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (783)
-.+.++..+-+.|..+.|+++-.+-. .-.....+.|+++.|.++.++ ..+...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 35556666666666666665533211 112333445555555554322 124445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 412 (783)
+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555443 4444455555555555555544444443 12333333444444444444
Q ss_pred HH
Q 039931 413 LL 414 (783)
Q Consensus 413 ~~ 414 (783)
++
T Consensus 424 lL 425 (443)
T PF04053_consen 424 LL 425 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 256
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.07 E-value=1.3 Score=42.62 Aligned_cols=104 Identities=12% Similarity=0.177 Sum_probs=59.9
Q ss_pred CCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 039931 563 VPDIVTYNTLIGGYCKA-----LDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTV 637 (783)
Q Consensus 563 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 637 (783)
.-|..+|.+.+..+... +.++-....++.|.+.|+.-|..+|+.|++.+=+.. +.|..+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 34666777777666532 445556666777777777777777777776654432 122221
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 039931 638 TYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQG 684 (783)
Q Consensus 638 ~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 684 (783)
.-...++. -.+-+=+++++++|...|+.||..+-..|+.++.+.|
T Consensus 128 fQ~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 128 FQKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 11111110 0122335666777777777777777777777766655
No 257
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.91 E-value=15 Score=39.04 Aligned_cols=176 Identities=11% Similarity=0.060 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMH 609 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 609 (783)
|....-+++..+...-+..-...+..+|+..| -+...|..++..|... ..+.-..+|+++++.. .-|.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHH
Confidence 44555667777777666777777777777754 4667777788887776 5567777788777742 223444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhhccHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh
Q 039931 610 GYCNIRKMNQAAMMLDELVSAGIVPN------TVTYNTLMNGVCCDILDRAIIIAAKLLK-MAFVPNVVTTNVLLSHFCK 682 (783)
Q Consensus 610 ~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~~~~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~~~ 682 (783)
.|-+ ++.+.+..+|.+.... +.|. ...|.-++. +..++.+.-+.+..++.. .|..--.+.+-.+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~-~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPE-LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHH-hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 7778888888777643 2231 134555554 223556666666666554 3333334555566667788
Q ss_pred cCChhhHHHHHHHHhhcCCCCCHHHHHHHHH
Q 039931 683 QGMPEKTLLWGQKLSEISFDFDETSYKIMDR 713 (783)
Q Consensus 683 ~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~ 713 (783)
..++++|++++..+++.+.+ |.-+-..++.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 88999999999988888766 6665444444
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.69 E-value=2.8 Score=35.44 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=64.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCHH---HHHHHHHHHH
Q 039931 110 LLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL-GPRPSNY---TFNALILGFC 185 (783)
Q Consensus 110 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~-~~~~~~~---~~~~l~~~~~ 185 (783)
-.-+....|+.+.|++.|.+.+..- +....+||.-..++.-+|+.++|++-+++.++. |+. .-. +|.--...|-
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHH
Confidence 3345677788888888888877653 455677888888888888888888888887764 332 222 2333344466
Q ss_pred hcCChhhHHHHHHHHHhCC
Q 039931 186 RNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g 204 (783)
..|+.+.|..-|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 7788888888888877766
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.67 E-value=9.7 Score=36.39 Aligned_cols=187 Identities=21% Similarity=0.106 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 039931 370 GLEENAFEAYKIMHQFGLT-PSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEK-GFPINKVAFTVLLDGYFRIGDLIGAQS 447 (783)
Q Consensus 370 g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 447 (783)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 12455566666667777777777776666542 233355566666666777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 448 LWNELNRRKIFPDAVAFSAYIN-GLSKAGLVDEAYGVFLEMSRIGFVP----NNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 448 ~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
.+.........+ ......... .+...|+++.|...+.+.... .| ....+......+...++.+.+...+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 777776654332 111222222 566667777777777666442 22 1222222222234444555555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039931 523 RQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 523 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 559 (783)
...........+..+...+...++.+.|...+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 4431111233344444444444444444444444443
No 260
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.44 E-value=11 Score=36.44 Aligned_cols=72 Identities=21% Similarity=0.165 Sum_probs=41.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGIS--PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLC 402 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 402 (783)
-.+.|++++|...|+.+..+-+- -...+.-.++.++.+.++++.|+...++....-......-|..-|.+++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 34567777777777777764221 1234445556667777777777777777666533322333444444444
No 261
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.36 E-value=6.4 Score=39.60 Aligned_cols=162 Identities=9% Similarity=-0.000 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCC--CHHHH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRT-GLVPD---IVTYNTLIGGYCKALDIVRADELVNKMYAGG---LDP--DITTY 604 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p--~~~~~ 604 (783)
|-.+..++-+.-++.+++.+-+.-... |..|. -....++..++.-.+.++++++.|+...+-- -.| ...+|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 444444554445555555554443321 22221 1223345566666777888888887776521 112 23567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHH-----Hh-hccHHHHHHHHHHHH----HcCCCCCH
Q 039931 605 NIRMHGYCNIRKMNQAAMMLDELVS----AGIVPNTVTYNTLMNG-----VC-CDILDRAIIIAAKLL----KMAFVPNV 670 (783)
Q Consensus 605 ~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~-----~~-~~~~~~A~~~~~~~~----~~~~~p~~ 670 (783)
..|...|.+..++++|.-+..+..+ .++.-=..-|..++-. +- .|.+..|.+..++.. .+| |.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G---dr 242 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG---DR 242 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC---Ch
Confidence 7888888888888888777666543 2322222334443322 11 266777777776643 455 44
Q ss_pred HHH----HHHHHHHHhcCChhhHHHHHHHHhh
Q 039931 671 VTT----NVLLSHFCKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 671 ~~~----~~ll~~~~~~g~~~~A~~~~~~~~~ 698 (783)
.++ ..+.+.|...|+.|.|+.-|+.+..
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 343 4566778899999999887777654
No 262
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.36 E-value=0.31 Score=30.38 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 671 VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 671 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
..|..+...+.+.|++++|++.++++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35677788899999999999999999999875
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.35 E-value=2.7 Score=41.68 Aligned_cols=157 Identities=9% Similarity=-0.023 Sum_probs=104.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCC--HHHHHHHHHHHHhcCChh
Q 039931 115 LRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL-GPRPS--NYTFNALILGFCRNGCIR 191 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~~~ 191 (783)
--+|.+.+|-..++++++. +|-|..+++..=.++.-.|+...-...+++++.. ++... ++.-....-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3467888888889998875 4678888888888999999999999999988765 22222 233333444556889999
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHH
Q 039931 192 IGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQAN 271 (783)
Q Consensus 192 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 271 (783)
+|.+.-++..+.+ +-|.....++.+.+-..|+.+++.++.......++. +--.-..-|=...-.+...+.++.|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hhHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999888766 577888899999999999998885432211111110 00000111222333455667888888
Q ss_pred HHHHHH
Q 039931 272 MLYEEM 277 (783)
Q Consensus 272 ~~~~~m 277 (783)
++|+.-
T Consensus 268 eIyD~e 273 (491)
T KOG2610|consen 268 EIYDRE 273 (491)
T ss_pred HHHHHH
Confidence 888653
No 264
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.32 E-value=9.6 Score=35.54 Aligned_cols=165 Identities=13% Similarity=0.068 Sum_probs=86.7
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH--
Q 039931 98 HLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNY-- 175 (783)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~-- 175 (783)
...|.-+.+||-|---+...|+++.|.+.|+...+.+..-+-...|.-|. +---|++.-|.+-|-..-+.++ .|++
T Consensus 93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~-~DPfR~ 170 (297)
T COG4785 93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDP-NDPFRS 170 (297)
T ss_pred hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCC-CChHHH
Confidence 34455567888888888888888888888888887764333333333332 2245778888777777766655 2332
Q ss_pred HHHHHHHHHHhcCChhhHHH-HHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCC------
Q 039931 176 TFNALILGFCRNGCIRIGES-LLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLS------ 248 (783)
Q Consensus 176 ~~~~l~~~~~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~------ 248 (783)
.|-.+.. ..-++.+|.. +.++..+ .|..-|...|-.|- .|++.+ +.+++.+....-.
T Consensus 171 LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS~--------e~l~~~~~a~a~~n~~~Ae 234 (297)
T COG4785 171 LWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKISE--------ETLMERLKADATDNTSLAE 234 (297)
T ss_pred HHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-HhhccH--------HHHHHHHHhhccchHHHHH
Confidence 3433332 2234445543 3444432 23333333332222 122221 1233333221100
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039931 249 PNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280 (783)
Q Consensus 249 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 280 (783)
.=..||--|...+...|+.++|..+|+-....
T Consensus 235 ~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 235 HLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 01235666666677777777777777776654
No 265
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.14 E-value=15 Score=37.21 Aligned_cols=130 Identities=11% Similarity=0.127 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc--cC----ChhHHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhcCC-
Q 039931 267 IDQANMLYEEMRSRDIAPDAVTFNIIVSGHCK--YG----GMEDGDRLLRDLSVSGLL---PNCTLYDITVAGLCWAGR- 336 (783)
Q Consensus 267 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~- 336 (783)
+++.+.+++.|.+.|..-+..+|-+..-.... .. ....|..+++.|.+..+- ++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788888888888777666654333222 11 244566777777665432 333344444433 2222
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 337 ---LDEAMEFFEDMFEKGISPSIF-AFNSIIAAYSRAGL---EENAFEAYKIMHQFGLTPSSCTCSSLL 398 (783)
Q Consensus 337 ---~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li 398 (783)
.+.+..+|+.+.+.|+..+-. -+.+-+-+++.... ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 344555566666555543222 22222222221111 234555666666666555555554443
No 266
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.12 E-value=5.1 Score=40.43 Aligned_cols=136 Identities=15% Similarity=0.228 Sum_probs=89.6
Q ss_pred cchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHh--c----CChhHHHHHHHHHHhCCC---CCCHhHHHHHHHH
Q 039931 225 TSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVK--A----RDIDQANMLYEEMRSRDI---APDAVTFNIIVSG 295 (783)
Q Consensus 225 ~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~ 295 (783)
.++++ ++...+++.|.+.|+..+..+|-+....... . .....|..+|+.|++.-. .++...+..++..
T Consensus 74 p~~~~---~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 74 PEEAF---KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHH---HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 66654 4557889999999999888777664333332 2 235689999999998732 3566677777654
Q ss_pred HHccCC----hhHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 296 HCKYGG----MEDGDRLLRDLSVSGLLPNCT--LYDITVAGLCWAGR--LDEAMEFFEDMFEKGISPSIFAFNSIIAA 365 (783)
Q Consensus 296 ~~~~g~----~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 365 (783)
..++ .+.++..|+.+.+.|+..+.. ..+.++...-.... ...+.++++.+.+.|+++....|..+.-.
T Consensus 151 --~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 151 --TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred --ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 3333 356788888888878765433 33333332222111 55788999999999999887777665433
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.12 E-value=1.7 Score=42.00 Aligned_cols=105 Identities=11% Similarity=0.169 Sum_probs=66.8
Q ss_pred CChHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHH
Q 039931 249 PNVVVYNALLNGYVKA-----RDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTL 323 (783)
Q Consensus 249 p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 323 (783)
.|..+|-+.+..+... +.++-....++.|.+-|+.-|..+|+.||+.+-+. .+.|....
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg----------------kfiP~nvf 128 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG----------------KFIPQNVF 128 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc----------------ccccHHHH
Confidence 4666777777666533 55666777788888888888888888888765331 12222221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 039931 324 YDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLE 372 (783)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 372 (783)
-..+++ | -.+-+-++.++++|...|+.||-.+-..|++++.+.+-.
T Consensus 129 Q~~F~H-Y--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLH-Y--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhh-C--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111 2 123345677888888888888888888888887776653
No 268
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=11 Score=35.81 Aligned_cols=205 Identities=17% Similarity=0.114 Sum_probs=99.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHH
Q 039931 177 FNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNA 256 (783)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 256 (783)
|.-...+|-...++++|...+.+..+. ...|...|. |-..++++-.+..+|.+. +--+..|+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh--------------AAKayEqaamLake~~kl--sEvvdl~eK 96 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH--------------AAKAYEQAAMLAKELSKL--SEVVDLYEK 96 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH--------------HHHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 333445566677777777766666531 111211111 111122233444554432 112345677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC--CCCCCHh--HHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSR--DIAPDAV--TFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLC 332 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~--t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (783)
-..+|..+|.++.|-..+++.-+. ++.|+.. .|.--+...-..++...|.+++.+ .-..+.
T Consensus 97 As~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk---------------~sr~lV 161 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK---------------CSRVLV 161 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH---------------hhhHhh
Confidence 777888888888777777665331 3444432 233333333344444444444333 334566
Q ss_pred hcCCHHHHHHHHHHHHHCC----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhc
Q 039931 333 WAGRLDEAMEFFEDMFEKG----ISPSI-FAFNSIIAAYSRAGLEENAFEAYKIMHQFG---LTPSSCTCSSLLVGLCKK 404 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g----~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~ 404 (783)
+..++++|-..|.+-.... --|+. ..|-..|-.|.-..++..|...++.--+.+ -.-+..+...|+.+| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 6666666666555433210 01111 224444555555667777777776643322 122344555555554 34
Q ss_pred CChhHHHHHH
Q 039931 405 GRLPEAWDLL 414 (783)
Q Consensus 405 g~~~~a~~~~ 414 (783)
|+.+++..+.
T Consensus 241 gD~E~~~kvl 250 (308)
T KOG1585|consen 241 GDIEEIKKVL 250 (308)
T ss_pred CCHHHHHHHH
Confidence 5555544433
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.02 E-value=0.34 Score=30.27 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 671 VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 671 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
.+|..+...|...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888999999999999999999999875
No 270
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.93 E-value=0.15 Score=32.04 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=15.8
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhh
Q 039931 693 GQKLSEISFDFDETSYKIMDRAYHN 717 (783)
Q Consensus 693 ~~~~~~~~~~~d~~~~~~l~~~y~~ 717 (783)
++++++++|+ ++.+|+.|+.+|..
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~ 25 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLN 25 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 4566666766 66777777776654
No 271
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.74 E-value=4.2 Score=35.44 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIM--PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALIL 182 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 182 (783)
..+-.-.....+.|++++|.+.|+.+..+-.. -...+--.|+.++.+.|+++.|+..+++.++..|..-...|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 34444455667789999999999998877321 1233455688889999999999999999999877655556666666
Q ss_pred HHHhcC
Q 039931 183 GFCRNG 188 (783)
Q Consensus 183 ~~~~~g 188 (783)
+++...
T Consensus 91 gL~~~~ 96 (142)
T PF13512_consen 91 GLSYYE 96 (142)
T ss_pred HHHHHH
Confidence 665433
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=4.8 Score=40.01 Aligned_cols=155 Identities=12% Similarity=0.009 Sum_probs=103.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCC
Q 039931 436 YFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFA----YNSLIAGFCNRGK 511 (783)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~li~~~~~~g~ 511 (783)
..-.|+..+|...++++.+.-+ .|..+++.--.++.-+|+.+.-...++++... ..||... -.....++..+|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3457888888888888888644 38888888888888899988888888887654 2344322 2333445567899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHHcCCHHHHHH
Q 039931 512 LNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP----DIVTYNTLIGGYCKALDIVRADE 587 (783)
Q Consensus 512 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~ 587 (783)
+++|.+.-++..+.+.. |.-.-.+....+-..|+..++.++..+-... .+. -..-|-...-.+...+.++.|++
T Consensus 191 y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99999888888776543 6666677777788888999988876653321 110 01112222233445678888888
Q ss_pred HHHHHHH
Q 039931 588 LVNKMYA 594 (783)
Q Consensus 588 ~~~~m~~ 594 (783)
+|++=.-
T Consensus 269 IyD~ei~ 275 (491)
T KOG2610|consen 269 IYDREIW 275 (491)
T ss_pred HHHHHHH
Confidence 8876443
No 273
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.22 E-value=3.4 Score=40.14 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=57.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHH
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPN---NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLL-P-DNFTFNII 537 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p-~~~~~~~l 537 (783)
.|+.-+. +.+.|++..|...|...++.. +-+ ...+-.|...+...|++++|..+|..+.+.-+. | -+..+--|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4555443 345566777777777776652 111 223455667777777777777777776665221 1 23455566
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
.....+.|+.++|..+|++..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66667777777777777777664
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.18 E-value=0.18 Score=32.20 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhcC
Q 039931 672 TTNVLLSHFCKQGMPEKTLLWGQKLSEIS 700 (783)
Q Consensus 672 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 700 (783)
+|..|...|.+.|++++|++++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46788889999999999999999966543
No 275
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.17 E-value=3 Score=40.48 Aligned_cols=97 Identities=19% Similarity=0.101 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIM--PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPR--PSNYTFNALI 181 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~ 181 (783)
.|+.-+.. .+.|++.+|...|...++.... -...++.-|...+...|++++|...|..+.+..|. .-+.++--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 57776655 4677799999999999987521 12345666999999999999999999999987543 2345677888
Q ss_pred HHHHhcCChhhHHHHHHHHHhC
Q 039931 182 LGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8899999999999999999876
No 276
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.08 E-value=12 Score=33.96 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=18.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 039931 342 EFFEDMFEKGISPSIFAFNSIIAAYSRAGLEEN 374 (783)
Q Consensus 342 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 374 (783)
+++..+.+.++.|+...+..+++.+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344444455556666666666666666665443
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.96 E-value=16 Score=38.82 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=27.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 466 AYINGLSKAGLVDEAYGVFLEMSRIGFV-PNNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
.+...+-+.|+.++|.+.|.+|.+..-. .+......|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444444555556666655555543211 11223344555555555555555555553
No 278
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.79 E-value=32 Score=38.55 Aligned_cols=213 Identities=14% Similarity=0.036 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH--HcCCHHHHHH
Q 039931 511 KLNEALKLEREMRQKGLLPDNFTFNIIINGFCK-QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYC--KALDIVRADE 587 (783)
Q Consensus 511 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~ 587 (783)
+.+.|..++....+.|.. +....-..+..... ..+...|.++|....+.|. +....+.++.-... -..+.+.|..
T Consensus 308 d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 344555555555555432 33222211111111 1234566666666665552 22222222111111 2335666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----hh---ccHHHHHHHHH
Q 039931 588 LVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGV-----CC---DILDRAIIIAA 659 (783)
Q Consensus 588 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-----~~---~~~~~A~~~~~ 659 (783)
++.+..+.| .|...--...+..+.. +.++.+.-.+..+.+.|..--...-..+.... .. ...+.+..++.
T Consensus 386 ~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
T KOG1550|consen 386 YYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYS 463 (552)
T ss_pred HHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHH
Confidence 666666655 2322222222233333 55566655555555544321111111111110 01 24556666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhh---hhHHHHHHHHHHhcC
Q 039931 660 KLLKMAFVPNVVTTNVLLSHFCKQ----GMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHN---IQENAEFFQETSEKS 732 (783)
Q Consensus 660 ~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~---~~~~~~~~~~~~~~~ 732 (783)
+....| +......+-+.|..- .+.+.|...+..+.+.+ ....-.|++.+-. +.. ..++++.+.++
T Consensus 464 ~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~ 535 (552)
T KOG1550|consen 464 RAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQA 535 (552)
T ss_pred HHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHH
Confidence 655544 333333333333222 25777777777776544 4455555655422 124 66666666665
Q ss_pred CCc
Q 039931 733 LFL 735 (783)
Q Consensus 733 ~~~ 735 (783)
...
T Consensus 536 ~~~ 538 (552)
T KOG1550|consen 536 SEE 538 (552)
T ss_pred Hhc
Confidence 543
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.18 E-value=38 Score=38.45 Aligned_cols=38 Identities=24% Similarity=0.453 Sum_probs=19.4
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 039931 237 MIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYE 275 (783)
Q Consensus 237 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 275 (783)
.+++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+
T Consensus 418 ~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 418 SYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 345555555554 44444555555655555555444433
No 280
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.91 E-value=37 Score=37.97 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=78.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHH
Q 039931 565 DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS-AGIVPNTVTYNTLM 643 (783)
Q Consensus 565 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li 643 (783)
...+.+--+.-+...|+..+|.++-.+.. -||...|..-+.++...++|++-.++-+++.. -|..| .+
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~P-------FV 751 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLP-------FV 751 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchh-------HH
Confidence 33445555566677899999999888776 58999999999999999999988877766542 23333 33
Q ss_pred HHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 039931 644 NGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQ 694 (783)
Q Consensus 644 ~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 694 (783)
.+|.+ |+.+||.+++-+.-. .. -.+.+|.+.|++.+|.+..-
T Consensus 752 e~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 33333 889999998876433 11 44557888999999987553
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.64 E-value=18 Score=33.87 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 039931 119 MSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLH 198 (783)
Q Consensus 119 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 198 (783)
...-|+--|.+.+... +.-+.++|-|.--+...|+++.|.+.|+...+.+|.-+-...|--|. +---|++..|.+-|-
T Consensus 80 L~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~ 157 (297)
T COG4785 80 LRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLL 157 (297)
T ss_pred HHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHH
Confidence 3444555555555543 23356677777777888888888888888887776443333333333 334577777777666
Q ss_pred HHHhC
Q 039931 199 VMHKY 203 (783)
Q Consensus 199 ~m~~~ 203 (783)
..-+.
T Consensus 158 ~fYQ~ 162 (297)
T COG4785 158 AFYQD 162 (297)
T ss_pred HHHhc
Confidence 55543
No 282
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.58 E-value=1.6 Score=39.86 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=56.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 039931 608 MHGYCNIRKMNQAAMMLDELVSAGIVPNT------VTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNV-VTTNVLLSH 679 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~ 679 (783)
.+-+.+.|++++|..-|.+.++. -|.. +.|..-..++.+ +..+.|+.-..+.++ +.|+. .....-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHH
Confidence 35578889999999988888863 2322 112111112222 566777777777777 33532 122222336
Q ss_pred HHhcCChhhHHHHHHHHhhcCCC
Q 039931 680 FCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
|.+...+++|+.-|+++.+++|.
T Consensus 178 yek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcc
Confidence 77778888888888888888876
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.48 E-value=40 Score=37.75 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=76.0
Q ss_pred HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 331 LCWAGRLDEAMEFFEDMFE-------KGISPSIFAFNSIIAAYSRAG-----LEENAFEAYKIMHQFGLTPSSCTCSSLL 398 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li 398 (783)
+....+.+.|..+|+...+ .| +....+.+...|.+.. +.+.|+.+|.+.-+.|. |+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 3345566666666666554 33 2334555556665532 55667777777777663 3443332222
Q ss_pred HHHHh-cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 039931 399 VGLCK-KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGY--FRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAG 475 (783)
Q Consensus 399 ~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 475 (783)
..... ..+...|.++|......|.. ....+.+++... .-..+...|...+++..++|. |....-...+..+.. +
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-c
Confidence 22111 23456777777777777644 111111111111 122356677777777766652 221212222223333 5
Q ss_pred ChHHHHHHHHHHHhCC
Q 039931 476 LVDEAYGVFLEMSRIG 491 (783)
Q Consensus 476 ~~~~A~~~~~~m~~~~ 491 (783)
..+.+.-.+..+...|
T Consensus 412 ~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 412 RYDTALALYLYLAELG 427 (552)
T ss_pred cccHHHHHHHHHHHhh
Confidence 5666655555555544
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.44 E-value=4 Score=37.65 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--hHHHHHHHHHHccCChhHHHHHHHHHHh
Q 039931 252 VVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDA--VTFNIIVSGHCKYGGMEDGDRLLRDLSV 314 (783)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 314 (783)
..+..+...|++.|+.+.|++.|.++.+....|.. ..+-.+|+.....+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999886444333 3456677777788888888777776654
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.08 E-value=28 Score=35.33 Aligned_cols=171 Identities=9% Similarity=-0.001 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCCHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREV-GIMP---SESAITILFKSLLRVGDYGSVWKLFRDMIHLG-----PRPSNYT 176 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~---~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~-----~~~~~~~ 176 (783)
.|-.|.+++-+.-++.+++.+-..-... |..| .-...-++..+....+.|+++++.|+...+.- +......
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 5666666666666666666655443322 1111 11233446667777788889999888887632 2222346
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhC--CCC-CCHH------hHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCC
Q 039931 177 FNALILGFCRNGCIRIGESLLHVMHKY--MCV-ADFF------AYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGL 247 (783)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~-~~~~------~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~ 247 (783)
|-.|...|.+..++++|.-+..+.... .+. .|.. +.-.+.-++.+.|+...|.+.|++|.++--++-.+-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra- 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA- 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH-
Confidence 888888899999999988777665432 111 1211 122334456778888888888887776655442210
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 248 SPNVVVYNALLNGYVKARDIDQANMLYEEMR 278 (783)
Q Consensus 248 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 278 (783)
.-......+.+.|-..|+.+.|+.-|+...
T Consensus 244 -~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 -LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred -HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 012234456677888888888888777654
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.75 E-value=4.8 Score=39.74 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 039931 323 LYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQ-----FGLTPSSCTCSSL 397 (783)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 397 (783)
++..++..+...|+.+.+...++++....+- +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4556677778888888888888888877554 777888888888888888888888887755 4666766655544
Q ss_pred HHH
Q 039931 398 LVG 400 (783)
Q Consensus 398 i~~ 400 (783)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.67 E-value=4.3 Score=40.09 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHHhHH
Q 039931 139 ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHK-----YMCVADFFAYN 213 (783)
Q Consensus 139 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~ 213 (783)
..++..++..+...|+++.+.+.+++.....| -+...|..++.+|.+.|+...|+..++++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 35566777777777777777777777777765 6667777777777777777777777776654 46777777776
Q ss_pred HHHHHH
Q 039931 214 ILINAY 219 (783)
Q Consensus 214 ~li~~~ 219 (783)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666663
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.66 E-value=18 Score=32.58 Aligned_cols=136 Identities=15% Similarity=0.067 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH-HHHH--H
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSES-AITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYT-FNAL--I 181 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l--~ 181 (783)
.|..-++ +.+.+..++|+.-|..+.+-|...-+. ..-.....+...|+...|...|+++-...+.|-..- ..-| .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 4444443 466788999999999999887532222 222334456778999999999999988766665541 1111 2
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC
Q 039931 182 LGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP 249 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p 249 (783)
-.+...|.+++.....+-+...+-+.....--.|.-+-.+.|++..| ++.|+.+......|
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A-------~~~F~qia~Da~ap 200 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKA-------KSWFVQIANDAQAP 200 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHH-------HHHHHHHHccccCc
Confidence 23567899999988888887666555556667777777889999988 78888887643333
No 289
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.48 E-value=56 Score=38.10 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039931 359 FNSIIAAYSRAGLEENAFEAYKIMHQ 384 (783)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (783)
|..|+..|...|+.++|++++.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 66677777777777777777776655
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.34 E-value=6.5 Score=36.28 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYAGGLDPDI--TTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
+..+...|++.|+.++|.+.+.++.+....|.. ..+-.+|......|++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444444444444444444443222221 22334444444444444444444433
No 291
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.33 E-value=23 Score=34.75 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhH------HHHHHHHHHhc
Q 039931 674 NVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQE------NAEFFQETSEK 731 (783)
Q Consensus 674 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~------~~~~~~~~~~~ 731 (783)
+...+.|.++|.+.+|.++.++++.++|- +...|..|.+.|+.+++ .++...+.+++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vlea 345 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 34455789999999999999999999985 89999999999987665 45555444444
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.18 E-value=1.1 Score=28.46 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888888888888888888754
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.83 E-value=21 Score=32.36 Aligned_cols=101 Identities=13% Similarity=0.173 Sum_probs=53.6
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 039931 237 MIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSG 316 (783)
Q Consensus 237 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 316 (783)
+.+..+.+.++.|+...|..+|+.+.+.|++..- ..+...++-||.......+-.+.. ....+.++=-+|.++=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 4555666677888888888888888888876543 344445566666555544422221 2223333333333210
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 317 LLPNCTLYDITVAGLCWAGRLDEAMEFFEDM 347 (783)
Q Consensus 317 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 347 (783)
...+..++..+...|++-+|.++.++.
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 002333444555555555555555543
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.39 E-value=0.73 Score=28.91 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHHhcCChhhH
Q 039931 172 PSNYTFNALILGFCRNGCIRIG 193 (783)
Q Consensus 172 ~~~~~~~~l~~~~~~~g~~~~A 193 (783)
.|..+|+.+...+...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444444
No 295
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.51 E-value=1.6 Score=43.18 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=48.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 039931 147 KSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTS 226 (783)
Q Consensus 147 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 226 (783)
+.|.++|++++|+.+|.......| .|++++..-..+|.+..++..|..-....+.. -...+.+|.+.+...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHHH
Confidence 346677777777777777666543 36666666666777776666655544444321 123445555555544
Q ss_pred hHhhhccchHHHHHHH
Q 039931 227 YALGKCGAGRMIFDMI 242 (783)
Q Consensus 227 ~A~~~~~~a~~~~~~m 242 (783)
.+++...+|.+-.+..
T Consensus 176 ~~Lg~~~EAKkD~E~v 191 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETV 191 (536)
T ss_pred HHHhhHHHHHHhHHHH
Confidence 4444433333333333
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.30 E-value=6.9 Score=38.60 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHHHH
Q 039931 598 DPDITTYNIRMHGYCNIRKMNQAAMMLDELVSA---GIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTN 674 (783)
Q Consensus 598 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 674 (783)
.....+...++..-.....++++..++-++... -..|+... .+.+.-+.+-+.++++.++..=+..|+-||..+..
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHccChHHHHHHHhCcchhccccchhhHH
Confidence 334444444444444455566666555555421 11222211 11222222234445555555555566666666666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhh
Q 039931 675 VLLSHFCKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 675 ~ll~~~~~~g~~~~A~~~~~~~~~ 698 (783)
.+++.+.+.|++.+|.++.-.++.
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666655544443
No 297
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.88 E-value=11 Score=37.34 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039931 461 AVAFSAYINGLSKAGLVDEAYGVFLEMSRIG---FVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNII 537 (783)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 537 (783)
..+...++..-....+++.+...+-++...- ..|+... .++++.+. .-++++++.++..=++-|+-||.++++.+
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHH
Confidence 3344444444444555666665555554321 1111111 11222222 22445555555555555666666666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 039931 538 INGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~ 559 (783)
|+.+.+.+++.+|.++...|+.
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666655555543
No 298
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.87 E-value=48 Score=34.55 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039931 320 NCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISP---SIFAFNSIIAAYSRAGLEENAFEAYKIMHQ 384 (783)
Q Consensus 320 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (783)
...++..+.....+.|.++.|...+.++...+..+ .......-+...-..|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566777777888888888888888877643211 233334445666677888888887777766
No 299
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.84 E-value=34 Score=32.80 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=21.8
Q ss_pred HHHhcCChhhHHHHHHHHhhc----CCCCCHHHHHHHHHHHhhhhHHHHHHHHH
Q 039931 679 HFCKQGMPEKTLLWGQKLSEI----SFDFDETSYKIMDRAYHNIQENAEFFQET 728 (783)
Q Consensus 679 ~~~~~g~~~~A~~~~~~~~~~----~~~~d~~~~~~l~~~y~~~~~~~~~~~~~ 728 (783)
.+....|+..|...++..-++ +++ |..+...|+.+|- +++.|.+.++
T Consensus 199 v~L~~~Dyv~aekc~r~~~qip~f~~se-d~r~lenLL~ayd--~gD~E~~~kv 249 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRDCSQIPAFLKSE-DSRSLENLLTAYD--EGDIEEIKKV 249 (308)
T ss_pred HHhhHHHHHHHHHHhcchhcCccccChH-HHHHHHHHHHHhc--cCCHHHHHHH
Confidence 444455566665555554332 222 3445555555542 3344444444
No 300
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.57 E-value=10 Score=34.42 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcc
Q 039931 583 VRADELVNKMYAGGLDPDI-TTYNIRMHGYCNIRK-----------MNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDI 650 (783)
Q Consensus 583 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 650 (783)
++|+.-|++.+. +.|+. .++..+..+|...+. +++|.+.|++..+ ..|+..+|+.-+ +.
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksL-----e~ 122 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSL-----EM 122 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHH-----HH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHH-----HH
Confidence 334444444444 56654 666666666655432 3445555555544 568888887766 33
Q ss_pred HHHHHHHHHHHHHcCCC
Q 039931 651 LDRAIIIAAKLLKMAFV 667 (783)
Q Consensus 651 ~~~A~~~~~~~~~~~~~ 667 (783)
.++|-++..++.+.+..
T Consensus 123 ~~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 123 AAKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHTHHHHHHHHHHSSS-
T ss_pred HHhhHHHHHHHHHHHhh
Confidence 45677777777765543
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.15 E-value=51 Score=34.30 Aligned_cols=142 Identities=11% Similarity=0.033 Sum_probs=83.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 039931 564 PDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP---DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN--TVT 638 (783)
Q Consensus 564 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~ 638 (783)
....+|..++..+.+.|.++.|...+.++...+..+ .+.....-...+...|+..+|+..+++.++..+..+ ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345688889999999999999999999988743211 334444556777788999999999988876322222 111
Q ss_pred HHHHHHHH----h---h-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------hcCChhhHHHHHHHHhhcCCCCC
Q 039931 639 YNTLMNGV----C---C-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFC------KQGMPEKTLLWGQKLSEISFDFD 704 (783)
Q Consensus 639 ~~~li~~~----~---~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~------~~g~~~~A~~~~~~~~~~~~~~d 704 (783)
...+..+. . . ....+-.+.. ...+..+..-+. ..+..+++...++++.++.|. .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~ 291 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELK-----------AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS-W 291 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHH-----------HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh-H
Confidence 11111110 0 0 0000000000 011212221222 347889999999999999876 6
Q ss_pred HHHHHHHHHHHhh
Q 039931 705 ETSYKIMDRAYHN 717 (783)
Q Consensus 705 ~~~~~~l~~~y~~ 717 (783)
..+|..++..+.+
T Consensus 292 ~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 292 EKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 6678777776543
No 302
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.97 E-value=1.4 Score=27.40 Aligned_cols=30 Identities=20% Similarity=0.066 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhcCC
Q 039931 672 TTNVLLSHFCKQGMPEKTLLWGQKLSEISF 701 (783)
Q Consensus 672 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 701 (783)
+|..+...|...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 567777888999999999999999999876
No 303
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.92 E-value=77 Score=36.12 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=66.8
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHH
Q 039931 298 KYGGMEDGDRLLRDLSVSGLLPNCT-----LYDITVAGLCWAGRLDEAMEFFEDMFEK----GISPSIFAFNSI-IAAYS 367 (783)
Q Consensus 298 ~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l-i~~~~ 367 (783)
...+++.|+..+.+.....-.++.. ....++..+.+.+... |...+++.++. +..+-...+..+ +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 4556666666666554332222111 1123344454544444 66666665442 111112222222 22222
Q ss_pred HcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHcC---------CCCCHhhHHHHH
Q 039931 368 RAGLEENAFEAYKIMHQFG---LTPSSCTCSSLLVGLC--KKGRLPEAWDLLCKMIEKG---------FPINKVAFTVLL 433 (783)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~li 433 (783)
..+++..|++.++.+...- ..|-..++..++.+.. +.+..+++.+.++.+.... ..|-..+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 3356666666666654421 1223333333333332 3444555555555553221 122334455555
Q ss_pred HHHH--hcCCHHHHHHHHHHH
Q 039931 434 DGYF--RIGDLIGAQSLWNEL 452 (783)
Q Consensus 434 ~~~~--~~g~~~~A~~~~~~~ 452 (783)
+.++ ..|+++.+...++++
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 4433 455555555444433
No 304
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.66 E-value=60 Score=34.67 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=61.3
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHH
Q 039931 87 KHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG-DYGSVWKLFRDM 165 (783)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~ 165 (783)
..++.........++.|+..|..-+.-+-+.+.+.+.-.+|..|+... +.++..|-.-..-...-+ +++.|..+|.+.
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 345555555556677788888888877777777888889999988876 455566654433333333 388888888888
Q ss_pred HhcCCCCCHHHHHH
Q 039931 166 IHLGPRPSNYTFNA 179 (783)
Q Consensus 166 ~~~~~~~~~~~~~~ 179 (783)
++.+| .++..|-.
T Consensus 167 LR~np-dsp~Lw~e 179 (568)
T KOG2396|consen 167 LRFNP-DSPKLWKE 179 (568)
T ss_pred hhcCC-CChHHHHH
Confidence 88765 44444433
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.57 E-value=34 Score=30.91 Aligned_cols=123 Identities=12% Similarity=0.101 Sum_probs=54.2
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHhcCCh
Q 039931 472 SKAGLVDEAYGVFLEMSRIGFVPNNFA-YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNF-TFNII--INGFCKQGRM 547 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~~ 547 (783)
.+.+..++|+.-|.++.+.|...-++. -..........|+...|...|+++-.....|-+. -...| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 445556666666666665543221111 1111222345566666666666655543333221 11111 1123345555
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 548 KPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 548 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+....-.+.+...+-+--...-..|.-+-.+.|++..|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55544444443322111222333444444455566666665555554
No 306
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.54 E-value=87 Score=35.63 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHhcCCCCCHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGD-------YGSVWKLFRDMIHLGPRPSNY 175 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~-------~~~A~~~~~~~~~~~~~~~~~ 175 (783)
+| .+|--|.|+|.+++|.++....... +......+...+..+....+ -+.....|++..+.....|++
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 55 5666789999999999999554432 34455667778888876533 236667778777665544665
No 307
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.43 E-value=9.2 Score=41.29 Aligned_cols=129 Identities=17% Similarity=0.103 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 039931 253 VYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLC 332 (783)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (783)
.-+.+++.+-+.|..++|+++- +|..-- .....+.|+++.|.++..+. .+..-|..|.+...
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 3455566666666666665441 222111 12223455555555554432 13344555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 412 (783)
..+++..|.+.|.+... |..|+-.+...|+.+....+-....+.|. .|....+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 55555555555554433 34444445555554444333333333331 1122233444555555554
Q ss_pred HH
Q 039931 413 LL 414 (783)
Q Consensus 413 ~~ 414 (783)
++
T Consensus 743 lL 744 (794)
T KOG0276|consen 743 LL 744 (794)
T ss_pred HH
Confidence 44
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.10 E-value=3.1 Score=25.73 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 142 ITILFKSLLRVGDYGSVWKLFRDMIH 167 (783)
Q Consensus 142 ~~~ll~~l~~~g~~~~A~~~~~~~~~ 167 (783)
|..+...+...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33344444444444444444444443
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.65 E-value=92 Score=35.28 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=64.1
Q ss_pred HHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC---ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHH
Q 039931 216 INAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP---NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNII 292 (783)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 292 (783)
++.+.+.+.+++|+ .+-+.. .|..| -...+-.+|..+.-.|++++|-...-.|... +..-|.--
T Consensus 363 i~Wll~~k~yeeAl-------~~~k~~--~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~ 429 (846)
T KOG2066|consen 363 IDWLLEKKKYEEAL-------DAAKAS--IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELW 429 (846)
T ss_pred HHHHHHhhHHHHHH-------HHHHhc--cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHH
Confidence 55666777777774 222222 12233 3456788899999999999999999888765 66667666
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 039931 293 VSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333 (783)
Q Consensus 293 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (783)
+.-+...++......+ +.......+..+|..++..+..
T Consensus 430 V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 430 VFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 6666666665443222 2222223456677777776665
No 310
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.36 E-value=22 Score=38.60 Aligned_cols=150 Identities=13% Similarity=0.021 Sum_probs=86.5
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 039931 186 RNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKAR 265 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 265 (783)
-.|+++.|..++..+. ....+.+.+.+.+.|-.++|++.+....+-| ....+.|
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~D~d~rF-------------------elal~lg 651 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELSTDPDQRF-------------------ELALKLG 651 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCCChhhhh-------------------hhhhhcC
Confidence 3456666655444332 2345566677777777766653322221112 2234567
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 266 DIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFE 345 (783)
Q Consensus 266 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 345 (783)
+++.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+.-..+-.
T Consensus 652 rl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 652 RLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred cHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 7777777665542 556677777777777887777777766544 3445555666666554444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039931 346 DMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIM 382 (783)
Q Consensus 346 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 382 (783)
...+.|. .|...-+|...|+++++.+++..-
T Consensus 717 ~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 4444433 233444566678888877776554
No 311
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.13 E-value=48 Score=31.63 Aligned_cols=117 Identities=14% Similarity=0.207 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHH--Hhh--ccHHHHHHHHHHHHHcCCCCCHHHHHH---H-HHHHHhc-
Q 039931 615 RKMNQAAMMLDELVS--AGIVPNTVTYNTLMNG--VCC--DILDRAIIIAAKLLKMAFVPNVVTTNV---L-LSHFCKQ- 683 (783)
Q Consensus 615 g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~--~~~--~~~~~A~~~~~~~~~~~~~p~~~~~~~---l-l~~~~~~- 683 (783)
.+++.|+..|++.-+ .|-..+...--+++.. |.. +++.+|+++++++....+.-+..-|.. + -.++|+.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 456666666666654 2333333333344432 222 788999999999776544444444432 2 2234443
Q ss_pred -CChhhHHHHHHHHhhcCCCCCH-HHHHHHHHHHhhh-hHHHHHHHHHHhc
Q 039931 684 -GMPEKTLLWGQKLSEISFDFDE-TSYKIMDRAYHNI-QENAEFFQETSEK 731 (783)
Q Consensus 684 -g~~~~A~~~~~~~~~~~~~~d~-~~~~~l~~~y~~~-~~~~~~~~~~~~~ 731 (783)
+|.-.+...+++-.++.|.+.. .-+..|-+....+ .++.+.+-+..+.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vke 258 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKE 258 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 5666778888899888887533 3455555544333 2455555554433
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.97 E-value=38 Score=30.34 Aligned_cols=15 Identities=13% Similarity=0.322 Sum_probs=6.1
Q ss_pred hcCChHHHHHHHHHH
Q 039931 543 KQGRMKPAIDAFMDM 557 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m 557 (783)
..|++.+|..+|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444443
No 313
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.89 E-value=5.3 Score=39.78 Aligned_cols=94 Identities=11% Similarity=-0.011 Sum_probs=68.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHH
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNG 260 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 260 (783)
++-|.+.|.+++|+..+.+-.... +.|.+++..-..+|.+..++..|...|+.|..+-+.-.+ +|+.-+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~K--------AYSRR~~A 174 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVK--------AYSRRMQA 174 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH--------HHHHHHHH
Confidence 345889999999999999877653 348999999999999999998887777776655443332 55555555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCC
Q 039931 261 YVKARDIDQANMLYEEMRSRDIAPD 285 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~g~~p~ 285 (783)
-...|...+|.+-++..++. +|+
T Consensus 175 R~~Lg~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhh--Ccc
Confidence 55566677777777766654 455
No 314
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=81.54 E-value=99 Score=34.87 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRM 130 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 130 (783)
++.-|+ .+..+.-.|.++.|.+++...
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 366777 577778889999999998543
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.18 E-value=1e+02 Score=34.89 Aligned_cols=102 Identities=15% Similarity=0.071 Sum_probs=59.0
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc
Q 039931 148 SLLRVGDYGSVWKLFRDMIHLGPRP-SNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTS 226 (783)
Q Consensus 148 ~l~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 226 (783)
-+.+.+.+++|+..-+.....-+.. -...+...|..+...|++++|-...-.|.. -+..-|---+..+...++.
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l- 439 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQL- 439 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccccc-
Confidence 3556667777776655543221110 123456667777777778777777777763 3455565555666665554
Q ss_pred hHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 039931 227 YALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVK 263 (783)
Q Consensus 227 ~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 263 (783)
..++.-++......+...|..++..+..
T Consensus 440 ---------~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 ---------TDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ---------chhhccCCCCCcccCchHHHHHHHHHHH
Confidence 3345555544333455677777776665
No 316
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.95 E-value=56 Score=31.69 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcCC
Q 039931 335 GRLDEAMEFFEDMFEKGISPSI---FAFNSIIAAYSRAGLEENAFEAYKIMHQF---GL--TPSSCTCSSLLVGLCKKGR 406 (783)
Q Consensus 335 g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~p~~~~~~~li~~~~~~g~ 406 (783)
.+.++|+.-|++.++...+... ...-.+|..+.+.+++++..+.|+++... .+ .-+..+.+++++......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 4566777777776664222222 22344567777777777777777766431 01 1133455666665555555
Q ss_pred hhHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHH
Q 039931 407 LPEAWDLLCKMIEK-----GFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFP-----------DAVAFSAYING 470 (783)
Q Consensus 407 ~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~li~~ 470 (783)
.+.-.++++.-++. +-...-.+-+.|...|...|++....++++++...-... -...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 54444444332211 111222344556677777777777777777665431100 12334444555
Q ss_pred HHccCChHHHHHHHHHHH
Q 039931 471 LSKAGLVDEAYGVFLEMS 488 (783)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~ 488 (783)
|....+-.+-..++++..
T Consensus 201 YT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhcccHHHHHHHHHHH
Confidence 555555555555555543
No 317
>PRK09687 putative lyase; Provisional
Probab=79.76 E-value=71 Score=32.09 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 039931 495 NNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQG-RMKPAIDAFMDMYRTGLVPDIVTYNTLI 573 (783)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li 573 (783)
+..+-...+.++.+.++ +.+...+-.+.+. +|...-...+.++.+.+ ....+...+..++. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444555555554 3344444444432 23333333344444332 13344445544443 34555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.++.+.|+ .+|...+-...+. ++ .....+.++...|.. +|+..+.++.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 55555555 3444444444432 22 122344555555553 45555555554
No 318
>PRK09687 putative lyase; Provisional
Probab=79.71 E-value=71 Score=32.07 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHHhcCC
Q 039931 495 NNFAYNSLIAGFCNRGK 511 (783)
Q Consensus 495 ~~~~~~~li~~~~~~g~ 511 (783)
|..+-...+.++.+.++
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 44444444444444444
No 319
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.41 E-value=9.4 Score=26.85 Aligned_cols=32 Identities=28% Similarity=0.220 Sum_probs=24.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHH
Q 039931 675 VLLSHFCKQGMPEKTLLWGQKLSEISFDFDETS 707 (783)
Q Consensus 675 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~ 707 (783)
.+.-++.+.|++++|.++.+.++++.|+ +..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~-N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPD-NRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS--HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCC-cHHH
Confidence 3444789999999999999999999976 4433
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.34 E-value=5 Score=24.64 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 143 TILFKSLLRVGDYGSVWKLFRDMIH 167 (783)
Q Consensus 143 ~~ll~~l~~~g~~~~A~~~~~~~~~ 167 (783)
..+...+...|++++|++.|++.++
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.93 E-value=14 Score=29.62 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039931 120 SAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALI 181 (783)
Q Consensus 120 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 181 (783)
.-++++-++.+...++.|++....+-++++.|.+++..|+++|+..... ...+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 3466667777777777788888888888888888888888888766532 212333455444
No 322
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.70 E-value=56 Score=30.29 Aligned_cols=89 Identities=6% Similarity=-0.053 Sum_probs=55.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRTGLVPDIVTY-----NTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYC 612 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 612 (783)
...+..+|++++|..-++..+.. |....+ ..|.......|.+++|+.+++.....+. .......-.+++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34566777888887777776642 222222 3344556677788888887776654321 2222334457778
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 039931 613 NIRKMNQAAMMLDELVSAG 631 (783)
Q Consensus 613 ~~g~~~~A~~~~~~m~~~g 631 (783)
..|+-++|..-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8888888888888777654
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.81 E-value=20 Score=33.36 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039931 548 KPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAG---GLDPDITTYNIRMHGYCNIRKMNQAA 621 (783)
Q Consensus 548 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~ 621 (783)
++|.+.|-++...+.--++.....|..-|. ..+.++++.++.+..+. +-.+|+..+.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455666656555443334444444444333 45666666666666552 22456666777777777777666653
No 324
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.77 E-value=1.3e+02 Score=34.19 Aligned_cols=97 Identities=11% Similarity=0.159 Sum_probs=47.6
Q ss_pred HHHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCCHhHHHHHHHHHH--ccCChhHHHHHHHHHHhCC---------
Q 039931 252 VVYNAL-LNGYVKARDIDQANMLYEEMRSRD---IAPDAVTFNIIVSGHC--KYGGMEDGDRLLRDLSVSG--------- 316 (783)
Q Consensus 252 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~--~~g~~~~A~~~~~~~~~~~--------- 316 (783)
..|.-+ +..+...+++..|++.++.+...- ..|-...+..++.+.. +.+..+++.+.+..+....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 334433 333333467777777777765531 2233344444444333 3455556666665553211
Q ss_pred CCCcHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 039931 317 LLPNCTLYDITVAGLC--WAGRLDEAMEFFEDMF 348 (783)
Q Consensus 317 ~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 348 (783)
..|-..++..+++.++ ..|+++.+...++++.
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1234445555555433 5566666655544443
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.44 E-value=4.3 Score=26.43 Aligned_cols=29 Identities=28% Similarity=0.214 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhc
Q 039931 671 VTTNVLLSHFCKQGMPEKTLLWGQKLSEI 699 (783)
Q Consensus 671 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 699 (783)
.+++.+...|...|++++|+.+++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788888999999999999999988764
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.28 E-value=39 Score=30.83 Aligned_cols=111 Identities=8% Similarity=0.025 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCC-------hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 039931 120 SAEVMEILYRMREVGIMPSESAITI---LFKSLLRVGD-------YGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC 189 (783)
Q Consensus 120 ~~~A~~~~~~~~~~g~~~~~~~~~~---ll~~l~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 189 (783)
++.|++..+.-...+ +.|...++. .+--+..... +++|+.-|++.+...| ....++..++.++...+.
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P-~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP-NKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHh
Confidence 455555555544444 344443332 2222222222 3456666667766554 333566667777665442
Q ss_pred -----------hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCC
Q 039931 190 -----------IRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGL 247 (783)
Q Consensus 190 -----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~ 247 (783)
+++|...|++.... .|+..+|+.-+....+ |-+++.++.+.+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~k-------------ap~lh~e~~~~~~ 138 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAAK-------------APELHMEIHKQGL 138 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHT-------------HHHHHHHHHHSSS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHh-------------hHHHHHHHHHHHh
Confidence 55666666666554 5888888877766543 2456677666544
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.13 E-value=23 Score=33.01 Aligned_cols=20 Identities=5% Similarity=0.011 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHhcCChHH
Q 039931 530 DNFTFNIIINGFCKQGRMKP 549 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~ 549 (783)
|+..+.+|++.+.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 33334444444444443333
No 328
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.95 E-value=63 Score=30.00 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=60.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 039931 540 GFCKQGRMKPAIDAFMDMYRTGLVPD-----IVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD-ITTYNIRMHGYCN 613 (783)
Q Consensus 540 ~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 613 (783)
-+.+.|++++|..-|...+.. +++. .+.|..-..++.+.+.++.|++-..+.++ +.|. .....--..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHh
Confidence 456678888888888777764 2222 23444445567778888888887777776 3342 2333333567888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH
Q 039931 614 IRKMNQAAMMLDELVSAGIVPNT 636 (783)
Q Consensus 614 ~g~~~~A~~~~~~m~~~g~~p~~ 636 (783)
..++++|++-|+++++. .|..
T Consensus 181 ~ek~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES--DPSR 201 (271)
T ss_pred hhhHHHHHHHHHHHHHh--Ccch
Confidence 88888888888888873 4544
No 329
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.57 E-value=57 Score=29.25 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=38.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039931 112 HGYLRVEMSAEVMEILYRMREVGIMPSESA-ITILFKSLLRVGDYGSVWKLFRDMIHLG 169 (783)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 169 (783)
..-.+.+..+++..+++.+.-.. |.... -..-...+++.|++.+|+.+|+++....
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 34456778889999888887763 33322 2223344678899999999999986654
No 330
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.12 E-value=58 Score=31.96 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=21.7
Q ss_pred HHHHHHHhcCChhhHHHHH----HHHhhcCCCCCHH
Q 039931 675 VLLSHFCKQGMPEKTLLWG----QKLSEISFDFDET 706 (783)
Q Consensus 675 ~ll~~~~~~g~~~~A~~~~----~~~~~~~~~~d~~ 706 (783)
-++..+.+.|.+.+|+... .++.+.+.+++-+
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 4566789999999998755 4455566555444
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.05 E-value=1.1e+02 Score=32.40 Aligned_cols=121 Identities=14% Similarity=0.132 Sum_probs=79.3
Q ss_pred HhcCChhHHHHH-HHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 039931 262 VKARDIDQANML-YEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEA 340 (783)
Q Consensus 262 ~~~g~~~~A~~~-~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (783)
...|++-.|-+- +.-+...--.|+.+...+ ..+...|+++.+.+.+....+. +.....+...++....+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 346776666544 444443323344444333 3456789999998888766543 234455677788888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 039931 341 MEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFG 386 (783)
Q Consensus 341 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 386 (783)
..+-+-|+...++ +........-..-..|-++++...++++...+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999988887666 44444443344445677889988888887654
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.42 E-value=7.1 Score=25.33 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 602 TTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 602 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.+++.|...|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677778888888888888888877764
No 333
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.77 E-value=21 Score=28.59 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 479 EAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMR 523 (783)
Q Consensus 479 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 523 (783)
++.+-++.+....+.|++....+.+++|.+.+++..|.++|+-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555556666666666666666666666666666554
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.06 E-value=4.8 Score=24.50 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=22.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 675 VLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 675 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
.+...+.+.|++++|.+.++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555677889999999999998887764
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.96 E-value=16 Score=29.60 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 122 EVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 122 ~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
+..+-+..+...++.|++....+.++++.|.+++..|+++|+.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55666666777777777777777777777777887777777766543
No 336
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.89 E-value=67 Score=28.36 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=6.6
Q ss_pred HcCCHHHHHHHHHHHH
Q 039931 578 KALDIVRADELVNKMY 593 (783)
Q Consensus 578 ~~g~~~~A~~~~~~m~ 593 (783)
..|++.+|..+|.++.
T Consensus 56 ~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 56 ARGNYDEAARILRELL 71 (153)
T ss_pred HcCCHHHHHHHHHhhh
Confidence 3344444444444443
No 337
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.87 E-value=1e+02 Score=33.09 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 039931 652 DRAIIIAAKLLK 663 (783)
Q Consensus 652 ~~A~~~~~~~~~ 663 (783)
++..+-.++|..
T Consensus 297 ~~C~~ei~~mk~ 308 (413)
T PHA02875 297 EKCIIELRRIKS 308 (413)
T ss_pred HHHHHHHHHHHh
Confidence 344445555655
No 338
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.70 E-value=1.2e+02 Score=31.21 Aligned_cols=71 Identities=14% Similarity=0.026 Sum_probs=32.7
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 039931 97 FHLFGSDFRVLDALLHGYLRVEM------------SAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRD 164 (783)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~ 164 (783)
....|.|..+|-.++..--..-. .+.-+.+++++++.+ +.+...+..+++...+..+.+...+-+++
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEE 90 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33456666677666643222111 233344444444443 23444444444444444444444444555
Q ss_pred HHhc
Q 039931 165 MIHL 168 (783)
Q Consensus 165 ~~~~ 168 (783)
++..
T Consensus 91 ~l~~ 94 (321)
T PF08424_consen 91 LLFK 94 (321)
T ss_pred HHHH
Confidence 5444
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.96 E-value=91 Score=29.50 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCCHHhHHHHHHH
Q 039931 141 AITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM--CVADFFAYNILINA 218 (783)
Q Consensus 141 ~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~ 218 (783)
|.+.-++.+.+.+...+|+....+-++..| .|..+-..+++.+|-.|++++|...++-.-+.. ..+-..+|..+|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345566778888888888888888888765 566667778888888999998887777665442 12334566666654
No 340
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=71.81 E-value=19 Score=29.17 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 479 EAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK 525 (783)
Q Consensus 479 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 525 (783)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555555666666666666666666666666666655543
No 341
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.41 E-value=84 Score=32.88 Aligned_cols=119 Identities=16% Similarity=0.134 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 039931 600 DITTYNIRMHGYCNIRKMNQAAMMLDELVS---AGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVL 676 (783)
Q Consensus 600 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 676 (783)
-..++..+...+.+.|+.+.|.+++++.+- ....|. ++........|.. -+.....-|...|.++
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~---F~~~~~~~~~g~~---------rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPS---FSPFRSNLTSGNC---------RLDYRRPENRQFFLAL 106 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---hhhhhcccccCcc---------ccCCccccchHHHHHH
Confidence 567888888999999999999999998762 111111 1100000000100 0000112244555544
Q ss_pred ---HHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 039931 677 ---LSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSE 730 (783)
Q Consensus 677 ---l~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~ 730 (783)
+..+.+.|-+.-|+++.+-+..++|..|+..-...++.|+-..+.++.+.+..+
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 457889999999999999999999988999888889988754444554444443
No 342
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=70.95 E-value=1.5 Score=38.90 Aligned_cols=84 Identities=12% Similarity=0.218 Sum_probs=57.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 039931 110 LLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC 189 (783)
Q Consensus 110 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 189 (783)
+++.|.+.+.++.+...++.+...+...+....+.++..|++.++.+...++++.. +.+-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666677888888888888887765666788888888888888878887777621 22334556777777777
Q ss_pred hhhHHHHHHHH
Q 039931 190 IRIGESLLHVM 200 (783)
Q Consensus 190 ~~~A~~~~~~m 200 (783)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77776666543
No 343
>PRK11619 lytic murein transglycosylase; Provisional
Probab=70.61 E-value=2e+02 Score=32.91 Aligned_cols=417 Identities=9% Similarity=0.010 Sum_probs=210.8
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 88 HMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIH 167 (783)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 167 (783)
.-+..|...+...|.....-..-+..+.+.+++.+.+. |. .. .+.+...-.....++...|+.++|......+-.
T Consensus 83 ~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~-~~---~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~ 157 (644)
T PRK11619 83 VQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLA-FS---PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWL 157 (644)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHH-hc---CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34445555554444444444444455566666665554 22 11 134555555677788888888888877777776
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhhHH--HHHHHHHhCCCCCCHHhHHHHHHHHHhc-CCcchHh-hhccchHHHHHHHH
Q 039931 168 LGPRPSNYTFNALILGFCRNGCIRIGE--SLLHVMHKYMCVADFFAYNILINAYCIR-GQTSYAL-GKCGAGRMIFDMIQ 243 (783)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~-~~~~~a~~~~~~m~ 243 (783)
.|. ..+..++.++..+.+.|.+.... +-+..+...| +...-..+...+... ...-++. ........+....
T Consensus 158 ~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~- 232 (644)
T PRK11619 158 TGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA- 232 (644)
T ss_pred cCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh-
Confidence 664 45667888888888776554432 1122222222 222222222222000 0000000 0000001111111
Q ss_pred HCCCCCChHHHHHHHHHHH--hcCChhHHHHHHHHHHhCC-CCCCH--hHHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 039931 244 EEGLSPNVVVYNALLNGYV--KARDIDQANMLYEEMRSRD-IAPDA--VTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLL 318 (783)
Q Consensus 244 ~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g-~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 318 (783)
. .+.|+...-..++.++. ...+.+.|..++....... ..+.. ..+..+.......+...++...++......
T Consensus 233 ~-~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-- 309 (644)
T PRK11619 233 R-TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-- 309 (644)
T ss_pred h-ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--
Confidence 1 11123222222222222 2456688999998875442 22221 223333333333323556666666544332
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 319 PNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLL 398 (783)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 398 (783)
.+.....--+..-.+.++++.+...+..|....-. ...-..=+.+++...|+.++|...|+.+... .+|-.++
T Consensus 310 ~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~L 382 (644)
T PRK11619 310 QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMV 382 (644)
T ss_pred CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHH
Confidence 23333444445555888999998999888653221 2333334566767789999999999997431 1333333
Q ss_pred HHHHhcCChhHH-HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 039931 399 VGLCKKGRLPEA-WDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477 (783)
Q Consensus 399 ~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 477 (783)
.+ .+.|..-.- ...... ....+..+ .-..-+..+...|....|...+..+... .+......+...-.+.|..
T Consensus 383 Aa-~~Lg~~~~~~~~~~~~-~~~~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~ 455 (644)
T PRK11619 383 AA-QRLGEEYPLKIDKAPK-PDSALTQG--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWW 455 (644)
T ss_pred HH-HHcCCCCCCCCCCCCc-hhhhhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCH
Confidence 22 122321000 000000 00000001 1123355677889999999999888775 2455556666666678888
Q ss_pred HHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 478 DEAYGVFLEMSRI-----GFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTF 534 (783)
Q Consensus 478 ~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 534 (783)
+.++......... .+ | ..|...+..+.+...++.++-.---..++++.|+..+-
T Consensus 456 ~~ai~~~~~~~~~~~~~~rf-p--~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S~ 514 (644)
T PRK11619 456 DLSVQATIAGKLWDHLEERF-P--LAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARSP 514 (644)
T ss_pred HHHHHHHhhchhHHHHHHhC-C--cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCccC
Confidence 8777666443221 11 2 24677777777766777766443334466777776543
No 344
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.46 E-value=1.1e+02 Score=29.82 Aligned_cols=172 Identities=8% Similarity=-0.015 Sum_probs=85.9
Q ss_pred CCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHc---C--
Q 039931 351 GISPSIFAFNSIIAA-YSRAGLEENAFEAYKIMHQFGLTPSS---CTCSSLLVGLCKKGRLPEAWDLLCKMIEK---G-- 421 (783)
Q Consensus 351 g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~-- 421 (783)
+-+||+..-|.--.+ -.+...+++|+.-|++..+....... .....++....+.+++++....+.+++.. .
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345665543322111 12345778888888887765322222 33455677777888888877777776532 0
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHhCCC----
Q 039931 422 FPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR-KIFPDAV----AFSAYINGLSKAGLVDEAYGVFLEMSRIGF---- 492 (783)
Q Consensus 422 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---- 492 (783)
-.-+..+.|++++.-....+.+--.+.++.-.+. .-..+.. |-+.+...|...+.+.+-.++++++..+--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1123445566666655555555555544432221 0000111 123344555555666666666666543210
Q ss_pred CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 493 VP-------NNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 493 ~p-------~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
.. =...|..-|+.|....+-..-..++++.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqa 217 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQA 217 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHH
Confidence 00 1233455555555555545555555543
No 345
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=69.89 E-value=1.9 Score=38.28 Aligned_cols=48 Identities=6% Similarity=0.107 Sum_probs=18.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 039931 507 CNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAF 554 (783)
Q Consensus 507 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 554 (783)
.+.+.++....+++.+...+...+....+.++..|++.++.++..+++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 333444444444444443333333444444444444444334433333
No 346
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.62 E-value=1.1e+02 Score=32.72 Aligned_cols=104 Identities=13% Similarity=0.016 Sum_probs=55.8
Q ss_pred HHHcCCHHHHHHHHHHHHH---CC--CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC-----
Q 039931 576 YCKALDIVRADELVNKMYA---GG--LDPD---ITTYNIRMHGYCNIRKMNQAAMMLDELVS-------AGIVPN----- 635 (783)
Q Consensus 576 ~~~~g~~~~A~~~~~~m~~---~g--~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~----- 635 (783)
+...|++.+|.+++...-- .| +.|. -..||.+.-.+.+.|.+.-+..+|.+.++ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 3456777777776643211 12 1221 22346666666677777776666666553 454443
Q ss_pred ------HHHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039931 636 ------TVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHF 680 (783)
Q Consensus 636 ------~~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 680 (783)
.++||+-+..+..|+.-.|.+.|.+.... +..++..|-.|..+|
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECC 379 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 24455555444456666666666655442 344555666665544
No 347
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.59 E-value=1.6e+02 Score=31.47 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCCChHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh--HHHHHHHHHHccCChhHHHHHHH
Q 039931 237 MIFDMIQEEGLSPNVVV--YNALLNGYVKARDIDQANMLYEEMRSRDIAPDAV--TFNIIVSGHCKYGGMEDGDRLLR 310 (783)
Q Consensus 237 ~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~A~~~~~ 310 (783)
++++.+.+.|..|+... ..+.+...++.|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+....+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 45566666777776533 334455556677764 444555566655432 12234455566777776655554
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.30 E-value=8.5 Score=22.47 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 672 TTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 672 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
+|..+...+...|++++|...+++.+++.|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566667788889999999998888877653
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.20 E-value=7.9 Score=25.97 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=16.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 039931 110 LLHGYLRVEMSAEVMEILYRMREVG 134 (783)
Q Consensus 110 l~~~~~~~g~~~~A~~~~~~~~~~g 134 (783)
|.++|...|+.+.|..++++++..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5666777777777777777666543
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.81 E-value=6.5 Score=22.70 Aligned_cols=22 Identities=23% Similarity=0.084 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 039931 107 LDALLHGYLRVEMSAEVMEILY 128 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~ 128 (783)
...|..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555666666666665554
No 351
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.77 E-value=1e+02 Score=28.71 Aligned_cols=90 Identities=9% Similarity=0.017 Sum_probs=54.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------hhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 039931 608 MHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGV------CCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFC 681 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~------~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 681 (783)
...+..+|++++|..-++..+. .|....+..++.-- ..+..|+|+.+++...+.++.+- .-..-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~--~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAI--VAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHH--HHHHhhhHHH
Confidence 3556677777777777776654 23333444444321 12677777777766555443321 1122344678
Q ss_pred hcCChhhHHHHHHHHhhcCCC
Q 039931 682 KQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 682 ~~g~~~~A~~~~~~~~~~~~~ 702 (783)
..|+.++|+..|++.++.++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 889999999999999887744
No 352
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.50 E-value=2.3e+02 Score=32.87 Aligned_cols=228 Identities=15% Similarity=0.042 Sum_probs=105.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCChHHHHHHHHHHHHc----CCCCChhHHHHHHH
Q 039931 507 CNRGKLNEALKLEREMRQKGLLPDN-------FTFNIIIN-GFCKQGRMKPAIDAFMDMYRT----GLVPDIVTYNTLIG 574 (783)
Q Consensus 507 ~~~g~~~~A~~l~~~m~~~~~~p~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~ 574 (783)
....++++|..+..++...-..|+. ..++.+-. .....|++++|.++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4556777777777766544222221 12333321 123467777877777766543 11234455666667
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHH--HHHHHhcCC--HHHHHHHHHHHHHC--CCCCC----HHHHHH
Q 039931 575 GYCKALDIVRADELVNKMYAGGLDPDITT---YNIR--MHGYCNIRK--MNQAAMMLDELVSA--GIVPN----TVTYNT 641 (783)
Q Consensus 575 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~l--i~~~~~~g~--~~~A~~~~~~m~~~--g~~p~----~~~~~~ 641 (783)
+..-.|++++|..+..+..+..-.-+... |..+ ...+...|. +.+....|...... +-+|- ..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77777888888777766554211222222 2222 234455562 22223333332211 11111 123333
Q ss_pred HHHHHhhccHHHHHHHHHHHHHcC--CCCCH-HH---HHHHHHHHHhcCChhhHHHHHHHHhhcCCCC----CHHHHHHH
Q 039931 642 LMNGVCCDILDRAIIIAAKLLKMA--FVPNV-VT---TNVLLSHFCKQGMPEKTLLWGQKLSEISFDF----DETSYKIM 711 (783)
Q Consensus 642 li~~~~~~~~~~A~~~~~~~~~~~--~~p~~-~~---~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----d~~~~~~l 711 (783)
+..++. +++.+..-.....+.| ..|.. .. +..|.......|++++|...+.++..+...+ +-.+-..+
T Consensus 586 ll~~~~--r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 586 LLRAWL--RLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHH--HHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 333322 2343333333322211 12222 11 2245556677888888887777776643322 22222222
Q ss_pred HHH-HhhhhHHHHHHHHHHhcCCCcc
Q 039931 712 DRA-YHNIQENAEFFQETSEKSLFLD 736 (783)
Q Consensus 712 ~~~-y~~~~~~~~~~~~~~~~~~~~~ 736 (783)
+.. |...+++.+.+.+...+....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~s~~~~ 689 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLKSGDPD 689 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHhccCch
Confidence 221 2223566666666665544433
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.03 E-value=50 Score=26.74 Aligned_cols=58 Identities=26% Similarity=0.161 Sum_probs=38.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHh
Q 039931 147 KSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFA 211 (783)
Q Consensus 147 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 211 (783)
.++...|++++|..+.+.. +.||...|.+|-. .+.|-.+.+..-+.+|...| .|....
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~ 104 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQT 104 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHH
Confidence 4466778888888877666 5678777766533 46666666666676776666 344333
No 354
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.89 E-value=22 Score=34.92 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 039931 141 AITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMH 201 (783)
Q Consensus 141 ~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 201 (783)
..+...+.|..+|.+.+|.++..+.+..++ .+...+-.+++.+...|+--.|..-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345566777788888888888888877765 667777778888888887777766666664
No 355
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.61 E-value=29 Score=29.88 Aligned_cols=53 Identities=21% Similarity=0.159 Sum_probs=39.5
Q ss_pred ccHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 649 DILDRAIIIAAKLLKMAFVPNV--VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
.+..+++.+++++.+. -.|+. .....|.-++.+.|++++++++.+.+++.+|+
T Consensus 49 ~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 4677899999988862 23322 33334444889999999999999999999876
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.59 E-value=1.3e+02 Score=28.64 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH
Q 039931 570 NTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSA--GIVPNTVTYNTLMN 644 (783)
Q Consensus 570 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~ 644 (783)
+..++.+.+.+.+.+|+...++-++. +| |...-..++..||-.|+|++|..-++-..+. ...+...+|..+|.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 33445555666666666666655553 33 4444555666677777777776665554431 12233455655554
No 357
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=65.55 E-value=1.5e+02 Score=29.54 Aligned_cols=115 Identities=10% Similarity=0.130 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-ChhHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 039931 372 EENAFEAYKIMHQ-FGLTPSSCTCSSLLVGLCK-KG-RLPEAWDLLCKMIEK-GFPINKVAFTVLLDGYFRIGDLIGAQS 447 (783)
Q Consensus 372 ~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 447 (783)
..+|+++|+...- ..+--|..+...+++.... .+ ....-.++.+.+... +-.++..+...++..+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4555555553221 1233355555555555544 22 122222333333322 344566677777777777777777777
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 039931 448 LWNELNRR-KIFPDAVAFSAYINGLSKAGLVDEAYGVFLE 486 (783)
Q Consensus 448 ~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 486 (783)
+++..... ++..|...|..+|....+.|+..-..++.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 77766554 4555777777777777777776655555443
No 358
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=64.94 E-value=18 Score=22.10 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+|..+...|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666777777777777777777654
No 359
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=63.63 E-value=1.6e+02 Score=29.33 Aligned_cols=154 Identities=13% Similarity=0.171 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 443 IGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
.-|.++|+..... ...+.++..+.+.+.-+.-+++ ++|+..+-......+...|--+-..-.-.++
T Consensus 184 ~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~elvey~~~q~ 249 (412)
T KOG2297|consen 184 SFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQ 249 (412)
T ss_pred HHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 4466677665543 1245666666555544444433 3677666555555554444222111111110
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHcCCCCChh----HHHHHHHHHHHcCCH-HHHHHHHHHHHHCC
Q 039931 523 RQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFM-DMYRTGLVPDIV----TYNTLIGGYCKALDI-VRADELVNKMYAGG 596 (783)
Q Consensus 523 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~----~~~~li~~~~~~g~~-~~A~~~~~~m~~~g 596 (783)
..- .-...-..|.+-..+...+++.....+ +|.+.+ -|+.. .|.+++++---..+- --|.+.+..
T Consensus 250 ~~~---a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrh----- 320 (412)
T KOG2297|consen 250 SEG---ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH----- 320 (412)
T ss_pred HHH---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH-----
Confidence 000 000111122333334445566555554 455554 46543 577776654322111 112233333
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 597 LDPDITTYNIRMHGYCNIRKMNQAAMM 623 (783)
Q Consensus 597 ~~p~~~~~~~li~~~~~~g~~~~A~~~ 623 (783)
..+|.-|+.++|..|+.+-.+-+
T Consensus 321 ----lK~yaPLL~af~s~g~sEL~Ll~ 343 (412)
T KOG2297|consen 321 ----LKQYAPLLAAFCSQGQSELELLL 343 (412)
T ss_pred ----HHhhhHHHHHHhcCChHHHHHHH
Confidence 34588999999999998766443
No 360
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=63.27 E-value=1.1e+02 Score=27.11 Aligned_cols=50 Identities=8% Similarity=-0.025 Sum_probs=26.3
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 039931 334 AGRLDEAMEFFEDMFEKGIS-PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF 385 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (783)
.++.+++..+++.|.-..++ |...++. .-.+...|++++|..+|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 56666666666666553222 1122222 22345566666666666666654
No 361
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.45 E-value=49 Score=35.93 Aligned_cols=103 Identities=17% Similarity=0.066 Sum_probs=76.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 039931 117 VEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESL 196 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 196 (783)
.|+...|...+..+.........+..-.|...+.+.|-..+|-.++.+.+... ...+.++..+++++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 47788888888776654333333445567777788888888988888888765 35667788889999999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHh
Q 039931 197 LHVMHKYMCVADFFAYNILINAYCI 221 (783)
Q Consensus 197 ~~~m~~~g~~~~~~~~~~li~~~~~ 221 (783)
|.+..+.. +.+.+.-+.|...-|+
T Consensus 699 ~~~a~~~~-~~~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 699 FRQALKLT-TKCPECENSLKLIRCM 722 (886)
T ss_pred HHHHHhcC-CCChhhHHHHHHHHHh
Confidence 99888764 4566777777766663
No 362
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.71 E-value=1.5e+02 Score=28.39 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=9.5
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 039931 368 RAGLEENAFEAYKIMHQF 385 (783)
Q Consensus 368 ~~g~~~~A~~~~~~m~~~ 385 (783)
..+++.+|+++|++....
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555443
No 363
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=60.73 E-value=14 Score=22.24 Aligned_cols=19 Identities=26% Similarity=0.684 Sum_probs=7.8
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 039931 149 LLRVGDYGSVWKLFRDMIH 167 (783)
Q Consensus 149 l~~~g~~~~A~~~~~~~~~ 167 (783)
+.+.|++++|.+.|+++++
T Consensus 10 ~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 3334444444444444433
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.10 E-value=93 Score=25.30 Aligned_cols=11 Identities=18% Similarity=0.462 Sum_probs=4.4
Q ss_pred hcCChHHHHHH
Q 039931 543 KQGRMKPAIDA 553 (783)
Q Consensus 543 ~~g~~~~A~~~ 553 (783)
+.|++++|..+
T Consensus 51 NrG~Yq~Al~l 61 (115)
T TIGR02508 51 NRGDYQSALQL 61 (115)
T ss_pred ccchHHHHHHh
Confidence 33444444433
No 365
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.80 E-value=1.2e+02 Score=26.67 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=59.4
Q ss_pred HHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHH
Q 039931 130 MREVGIMPSESA--ITILFKSLLRVGDYGSVWKLFRDMIHLGP-----RPSNYTFNALILGFCRNGC-IRIGESLLHVMH 201 (783)
Q Consensus 130 ~~~~g~~~~~~~--~~~ll~~l~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~ 201 (783)
|.+.+..++..+ .|.++.-+...+++...+.+++.+....+ ..+..+|.+++++.+.... ---+..+|..|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 344444444433 46666666666777776666666643221 1344568888888866655 445677788888
Q ss_pred hCCCCCCHHhHHHHHHHHHhc
Q 039931 202 KYMCVADFFAYNILINAYCIR 222 (783)
Q Consensus 202 ~~g~~~~~~~~~~li~~~~~~ 222 (783)
+.+...+..-|..+|.++.+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 777788888888888876543
No 366
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=59.80 E-value=24 Score=34.79 Aligned_cols=52 Identities=13% Similarity=-0.042 Sum_probs=23.8
Q ss_pred ccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 649 DILDRAIIIAAKLLKMAFVPNV-VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
|+.++|..+|+.++. +.|+. ....-+....-.+.+.-+|-++|-+++.+.|.
T Consensus 130 Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred cchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 455555555555554 23332 22222222223334455555555555555554
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.18 E-value=20 Score=24.07 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=17.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSRD 281 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~g 281 (783)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777776543
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.08 E-value=33 Score=26.41 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHHhcCChhhHHHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVP-NV-VTTNVLLSHFCKQGMPEKTLLWG 693 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p-~~-~~~~~ll~~~~~~g~~~~A~~~~ 693 (783)
...++|+..+.+.++.-..| +. .+...++.+|+.-|++++++.+.
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777766533222 22 45667777778888777777654
No 369
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=57.22 E-value=3.3e+02 Score=30.74 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHH
Q 039931 251 VVVYNALLNGYVKARDIDQANMLYEEM 277 (783)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~m 277 (783)
..-|+ .+..+.-.|.++.|.++++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 55666 677778889999999988544
No 370
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.04 E-value=1.4e+02 Score=26.37 Aligned_cols=81 Identities=10% Similarity=0.110 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC---C--CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYAGG---L--DPDITTYNIRMHGYCNIRK-MNQAAMMLDELVSAGIVPNTVTYNTL 642 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~--~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 642 (783)
.++++.-....+++.-...+++.+.... + ..+...|.+++.+..+..- ---+..+|.-|.+.+.+++...|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555655555555553210 0 1233456666666655444 33455566666665666666667777
Q ss_pred HHHHhhc
Q 039931 643 MNGVCCD 649 (783)
Q Consensus 643 i~~~~~~ 649 (783)
|.++.+|
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6654443
No 371
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=56.87 E-value=2.9e+02 Score=29.96 Aligned_cols=179 Identities=12% Similarity=0.101 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 039931 355 SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLD 434 (783)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 434 (783)
|....-+++..+.++....-...+..+|...| .+...|..++..|... ..++-..+++++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 55566677777777777777777788887754 3667777778777777 556777778877777554 5555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 039931 435 GYFRIGDLIGAQSLWNELNRRKIFP--D---AVAFSAYINGLSKAGLVDEAYGVFLEMSRI-GFVPNNFAYNSLIAGFCN 508 (783)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~ 508 (783)
.|-+ ++...+...|.++..+-+.. + ...|..++... ..+.+..+.+..++... |...-.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5554 77777777777766542210 1 12344444311 34555666666555532 333344555555566667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 509 RGKLNEALKLEREMRQKGLLPDNFTFNIIINGF 541 (783)
Q Consensus 509 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 541 (783)
..++++|++++..+.+..-+ |...-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 77777777777777766433 555555555443
No 372
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=55.69 E-value=3.6e+02 Score=30.75 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC-------hhHHHHHHHHHHhCCC
Q 039931 254 YNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG-------MEDGDRLLRDLSVSGL 317 (783)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-------~~~A~~~~~~~~~~~~ 317 (783)
-=++|-.+.|+|++++|.++..+.... .......+...+..+....+ -+....-+....+...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 335778889999999999999665543 44456778888888877533 2344455555554433
No 373
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=54.78 E-value=2.1e+02 Score=27.81 Aligned_cols=57 Identities=5% Similarity=0.023 Sum_probs=28.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHH
Q 039931 502 LIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFC-KQGRMKPAIDAFMDMY 558 (783)
Q Consensus 502 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 558 (783)
++..+.+.|+++++.+.++++...+...+..--|.+-.+|- ..|....+.+++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 44455566666666666666666655555555555555552 2333444444444433
No 374
>PRK10941 hypothetical protein; Provisional
Probab=54.55 E-value=1.5e+02 Score=29.51 Aligned_cols=78 Identities=12% Similarity=0.057 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCCHHhHHHHHHHHHh
Q 039931 143 TILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM-CVADFFAYNILINAYCI 221 (783)
Q Consensus 143 ~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~ 221 (783)
+.|-.+|.+.++++.|+.+.+.++...| .++.-+.--+-.|.+.|++..|..-++..++.- -.|+...-...+..+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIEQ 263 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHhh
Confidence 4566778888889999988888888766 666667777777888899888888888776542 23455555555555443
No 375
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.21 E-value=1.8e+02 Score=28.80 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhh----cCCCCCHH-HHHHHHHHHhh---hhHHHHHHHHHHhcCCC
Q 039931 671 VTTNVLLSHFCKQGMPEKTLLWGQKLSE----ISFDFDET-SYKIMDRAYHN---IQENAEFFQETSEKSLF 734 (783)
Q Consensus 671 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~d~~-~~~~l~~~y~~---~~~~~~~~~~~~~~~~~ 734 (783)
..|..+...|+..++.+.+.++..+..+ .+.+-|.. +-..|+-.|.. +++.+|.+..+++|+-.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 4455566666666666666666655443 22222221 23334444433 23555556666666543
No 376
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.85 E-value=1.8e+02 Score=28.39 Aligned_cols=39 Identities=10% Similarity=-0.014 Sum_probs=17.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGY 576 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 576 (783)
+..+-+.|+++++.++++++...+...+..-.+.|..+|
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 334444555555555555555444334444444444444
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.10 E-value=42 Score=25.85 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=28.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChhhHHHH
Q 039931 151 RVGDYGSVWKLFRDMIHLGPRPSN--YTFNALILGFCRNGCIRIGESL 196 (783)
Q Consensus 151 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~ 196 (783)
.+++.++|+..+...++.-..+.. .++..++.+++..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777765433221 2566667777777777766554
No 378
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.93 E-value=2e+02 Score=27.74 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=66.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCH
Q 039931 540 GFCKQGRMKPAIDAFMDMYRTGLVPDIVT-YNTLIGGYCKALDIVRADELVNKMYAGGLDPDITT-YNIRMHGYCNIRKM 617 (783)
Q Consensus 540 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~ 617 (783)
-|....+++.|+..|.+.+. +.|++.+ |+.=+-.+.+..+++.+..--.+.++ +.||.+- ...+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 34556678888887777776 4677644 45556666777778877776666665 6676643 44555677777888
Q ss_pred HHHHHHHHHHHH----CCCCCCHHHHHHHHHH
Q 039931 618 NQAAMMLDELVS----AGIVPNTVTYNTLMNG 645 (783)
Q Consensus 618 ~~A~~~~~~m~~----~g~~p~~~~~~~li~~ 645 (783)
++|+..+.+..+ ..+.|.......|..+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 888888877743 3344444455555544
No 379
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.39 E-value=42 Score=31.46 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 651 LDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 651 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
.+...+..++..+ ..|+..+|..++..+...|+.++|.++.+++..+.|.
T Consensus 127 l~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3444455556666 5799999999999999999999999999999999873
No 380
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=51.06 E-value=2.7e+02 Score=27.86 Aligned_cols=119 Identities=15% Similarity=0.124 Sum_probs=77.6
Q ss_pred cCChhhHHHHHHHHHh-CCCCCCHHhHHHHHHHHHh-cCCcchHhhhccchHHHHHHHHH-CCCCCChHHHHHHHHHHHh
Q 039931 187 NGCIRIGESLLHVMHK-YMCVADFFAYNILINAYCI-RGQTSYALGKCGAGRMIFDMIQE-EGLSPNVVVYNALLNGYVK 263 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~ 263 (783)
+..+.+|+.+|+...- ..+-.|..+-..|++.... .+..-.|+ -++.+-+.. .|-.++..+-..+|..+++
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~al------YEvV~~l~~t~~~~l~~~vi~~Il~~L~~ 214 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNAL------YEVVDFLVSTFSKSLTRNVIISILEILAE 214 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhH------HHHHHHHHhccccCCChhHHHHHHHHHHh
Confidence 3445667777763321 2234566666777776665 33322222 233333332 2445677778888899999
Q ss_pred cCChhHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHccCChhHHHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSR-DIAPDAVTFNIIVSGHCKYGGMEDGDRLLRD 311 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 311 (783)
.+++..-.++++.-... +..-|...|..+|+.....|+..-...+..+
T Consensus 215 ~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 215 SRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 99999999998887765 5666888899999998888888766665543
No 381
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.32 E-value=3.3e+02 Score=28.63 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=22.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHH-----HcCCCCCHHHHHHHHH
Q 039931 641 TLMNGVCCDILDRAIIIAAKLL-----KMAFVPNVVTTNVLLS 678 (783)
Q Consensus 641 ~li~~~~~~~~~~A~~~~~~~~-----~~~~~p~~~~~~~ll~ 678 (783)
.+|..++..++...+++++++. ..-+.|.+.+...+|+
T Consensus 310 ~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 310 EILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 3445566677788887777753 2334566555555543
No 382
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.91 E-value=2.4e+02 Score=26.96 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHcCCC---C-CHHHHHHHHH-HHHhcCChhhHHHHHHHHhhcCCC
Q 039931 650 ILDRAIIIAAKLLKMAFV---P-NVVTTNVLLS-HFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~---p-~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
-+.+|.+.|.+..+..-. + +..+...|+. ...+.|+.++|.+++.+++...-.
T Consensus 140 fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 140 FLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 356777777776653222 2 2334334444 457899999999999999886544
No 383
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=49.81 E-value=2.8e+02 Score=27.78 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhcCChHHH
Q 039931 531 NFTFNIIINGFCKQGRMKPA 550 (783)
Q Consensus 531 ~~~~~~li~~~~~~g~~~~A 550 (783)
..+|.-|+.++|..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34566677777777766544
No 384
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.71 E-value=5.1e+02 Score=30.69 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039931 253 VYNALLNGYVKARDIDQANMLYEEMRSR 280 (783)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 280 (783)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4888999999999999999999998763
No 385
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=49.51 E-value=2.2e+02 Score=26.46 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHH-HHHhcCC--hhHHHHHHHHHHhC
Q 039931 213 NILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLN-GYVKARD--IDQANMLYEEMRSR 280 (783)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 280 (783)
+...-.....|++++|.+.++.|.+...++.+ -...|..+.. +++..+. +-+|.-++......
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~-----~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKR-----LLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 33334445667777776666666666666653 2334555554 5665543 55677677666554
No 386
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.03 E-value=3.4e+02 Score=28.46 Aligned_cols=122 Identities=11% Similarity=-0.030 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHH-HHHHHHh---cCCcchHhhhccchHHHHHHHHHCCC
Q 039931 172 PSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNI-LINAYCI---RGQTSYALGKCGAGRMIFDMIQEEGL 247 (783)
Q Consensus 172 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~---~g~~~~A~~~~~~a~~~~~~m~~~g~ 247 (783)
-.+.++-.+...+...|+.+.|.+++++.+- ++.. +...+.. ......+ -++ ...
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf--------~~e~~~~~~F~~~~~~~~~g~~---------rL~----~~~ 96 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALF--------AFERAFHPSFSPFRSNLTSGNC---------RLD----YRR 96 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHHHHHhhhhhcccccCcc---------ccC----Ccc
Confidence 5667777788888888888888888887752 2221 1111100 0000000 000 001
Q ss_pred CCChHHHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH-ccCChhHHHHHHHHHHh
Q 039931 248 SPNVVVYNAL---LNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHC-KYGGMEDGDRLLRDLSV 314 (783)
Q Consensus 248 ~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~A~~~~~~~~~ 314 (783)
.-|...|-++ |..+.+.|.+..|++..+-+...++.-|+.....+|+.|+ +.++++--.++.+....
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 1144555554 5678889999999999999998876667777777777654 56777777777766544
No 387
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=48.47 E-value=3.2e+02 Score=27.95 Aligned_cols=81 Identities=11% Similarity=-0.096 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHcCC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039931 547 MKPAIDAFMDMYRTGL----VPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAM 622 (783)
Q Consensus 547 ~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 622 (783)
.++|.+.|++....+. ..+......++....+.|+.++-..+++.... .++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4456666666665311 22444445555555566665554455444443 3455556666666666666666666
Q ss_pred HHHHHHHC
Q 039931 623 MLDELVSA 630 (783)
Q Consensus 623 ~~~~m~~~ 630 (783)
+++.....
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 66666653
No 388
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.17 E-value=2.9e+02 Score=27.45 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 039931 568 TYNTLIGGYCKALDIVRADELVN 590 (783)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~~~~ 590 (783)
.+..+..-|++.++.+.+.+...
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Confidence 44444445555555554444443
No 389
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.76 E-value=43 Score=24.50 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 582 IVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 582 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
+++..++++.+.. ..-|..-.-.+|.+|...|++++|.++++++.
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444433 12344444456677777777777777766665
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.84 E-value=2.9e+02 Score=29.21 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=9.8
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 039931 542 CKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 542 ~~~g~~~~A~~~~~~m~~~ 560 (783)
.+.+++..|.++|+.+...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR 160 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh
Confidence 3455555555555555543
No 391
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.55 E-value=22 Score=30.50 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=24.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 115 LRVEMSAEVMEILYRMREVGIMPSESAITILFKS 148 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 148 (783)
...|.-.+|..+|++|++.|-+|| .|+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 345667789999999999997775 57877764
No 392
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.52 E-value=4.4e+02 Score=29.10 Aligned_cols=118 Identities=12% Similarity=0.040 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCChHH-------HHHHHHHHHHCCCCCC------------HHHHH----HHHHHHHhcCChhHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAE-------VMEILYRMREVGIMPS------------ESAIT----ILFKSLLRVGDYGSVWKLF 162 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~g~~~~------------~~~~~----~ll~~l~~~g~~~~A~~~~ 162 (783)
++-.+...+...|+.+- |+-.|+++..-.+.|. ...+. .-+..+.+.|-+..|+++-
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~c 365 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWC 365 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 44445566777777654 4555666655544432 22222 2345567889999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHH-hcCChhhHHHHHHHHHhCC---CCCCHHhHHHHHHHHHhcC
Q 039931 163 RDMIHLGPRPSNYTFNALILGFC-RNGCIRIGESLLHVMHKYM---CVADFFAYNILINAYCIRG 223 (783)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g 223 (783)
+-+....|..|+.....+|+.|+ +..+++--+++++...... ..||-.--.+|...|....
T Consensus 366 KlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~ 430 (665)
T KOG2422|consen 366 KLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKN 430 (665)
T ss_pred HHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcC
Confidence 99999998889999999998886 7778888888888765432 2355433344444444433
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=46.39 E-value=1.9e+02 Score=28.60 Aligned_cols=57 Identities=7% Similarity=0.045 Sum_probs=24.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
|.++...+++.++....-+..+.--+..+.+...-|-.|.+.+++..+.++-..-..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 444445555554444333332221122233334444445555555554444444433
No 394
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.99 E-value=25 Score=30.19 Aligned_cols=33 Identities=27% Similarity=0.554 Sum_probs=23.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 149 LLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 149 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
+.+.|.-.+|..+|..|+..|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34557777888888888888877765 6666654
No 395
>PRK11619 lytic murein transglycosylase; Provisional
Probab=45.76 E-value=5.2e+02 Score=29.68 Aligned_cols=80 Identities=9% Similarity=-0.054 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 039931 143 TILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIR 222 (783)
Q Consensus 143 ~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 222 (783)
..-+..+.+.+++...+.++.. ++.+...-.....+....|+.++|......+-..| .......+.+++.+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHc
Confidence 3455566677777777663311 33555555667778888898888888777776666 34456777777777766
Q ss_pred CCcchH
Q 039931 223 GQTSYA 228 (783)
Q Consensus 223 g~~~~A 228 (783)
|.+...
T Consensus 177 g~lt~~ 182 (644)
T PRK11619 177 GKQDPL 182 (644)
T ss_pred CCCCHH
Confidence 666544
No 396
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.55 E-value=1.7e+02 Score=24.14 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=12.7
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 563 VPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 563 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.||...|.+|-.. +.|--+++...+.++..
T Consensus 68 ~pdL~p~~AL~a~--klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 68 YPDLEPWAALCAW--KLGLASALESRLTRLAS 97 (116)
T ss_dssp -GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT
T ss_pred CccHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 3444444443332 44544555544444443
No 397
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.08 E-value=4.1e+02 Score=27.97 Aligned_cols=179 Identities=15% Similarity=0.133 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---------CCCC
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGI--MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLG---------PRPS 173 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~---------~~~~ 173 (783)
..++-|...|..+|+++.|++.+.+.+..-- ...+..|-.++..-.-.|+|..+..+-.+....- +.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4688899999999999999999999665421 1233456667777777888888877777665431 1122
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-------CCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCC
Q 039931 174 NYTFNALILGFCRNGCIRIGESLLHVMHKYMC-------VADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEG 246 (783)
Q Consensus 174 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g 246 (783)
...+..+...+ .+++..|...|-......+ +.|+.+|.. +.+++-.++-+--+... ....|....+
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYgg-LcALAtfdr~~Lk~~vi--~n~~Fk~fle-- 303 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGG-LCALATFDRQDLKLNVI--KNESFKLFLE-- 303 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHh-hHhhccCCHHHHHHHHH--cchhhhhHHh--
Confidence 22333333333 3366666665544332221 123344432 33333222221110000 0112233322
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCCHhHHHHHHH
Q 039931 247 LSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR-----DIAPDAVTFNIIVS 294 (783)
Q Consensus 247 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~ 294 (783)
..+..+..+-..| .+++...+++++++..+ -+.|.+.+.-.+|+
T Consensus 304 --l~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 304 --LEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred --cChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 2334455554444 56788899999888654 24556666555554
No 398
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=43.98 E-value=2.7e+02 Score=25.87 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=31.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC--------------CCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 039931 396 SLLVGLCKKGRLPEAWDLLCKMIEKGFP--------------INKVAFTVLLDGYFRIGDLIGAQSLWN 450 (783)
Q Consensus 396 ~li~~~~~~g~~~~a~~~~~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 450 (783)
+++-.|-+..++.++.++++.|.+..+. +.-...|.....+.+.|.++.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4555667777777777777777654221 122334444555555555555555554
No 399
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=43.82 E-value=1.2e+02 Score=31.73 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=25.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHH--hcCCHHHHHHHHHH
Q 039931 575 GYCKALDIVRADELVNKMYAGGLDPDITT----YNIRMHGYC--NIRKMNQAAMMLDE 626 (783)
Q Consensus 575 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~li~~~~--~~g~~~~A~~~~~~ 626 (783)
.+...+++..|.++|+++....++|+... |..+..+|. ..-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34455666666666666666544443332 222223332 12345555555554
No 400
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=43.70 E-value=1e+02 Score=33.69 Aligned_cols=152 Identities=12% Similarity=0.061 Sum_probs=93.9
Q ss_pred CCcHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 039931 318 LPNCTLYDITVAGLCWA--GRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCS 395 (783)
Q Consensus 318 ~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 395 (783)
-|+..+..+++.-.... ...+-+..+|..|.. -+.|--.+.|...--+--.|+...|...+.........-..+...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 35555555544433221 123344455555543 233333333333223334688888888777765543333344555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 396 SLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLS 472 (783)
Q Consensus 396 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 472 (783)
.|.+...+.|..-+|..++.+.+... ...+-++-.+.+++....+++.|++.|++..+.... +.+.-+.|...-|
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 66777777788888888888777765 335677788889999999999999999988887554 5666666655444
No 401
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=42.75 E-value=64 Score=34.18 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCC
Q 039931 653 RAIIIAAKLLKMAFVPNV--VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDF 703 (783)
Q Consensus 653 ~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 703 (783)
+.+++..-+..-.+.|.+ .+...-++.++|.+++.-|-.+.+++++++|.+
T Consensus 281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 444444444444566655 345555667889999999999999999999764
No 402
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.71 E-value=3.8e+02 Score=27.24 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HH
Q 039931 567 VTYNTLIGGYCKALDIVRADELVNKMYA----GGLDPDITTYNIRM-HGYCNIRKMNQAAMMLDELVSAGIVPNTVT-YN 640 (783)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~ 640 (783)
..+.....-||+.|+.+.|.+.+.+..+ .|.+.|+..+..-+ -.|....-+.+-++..+.+.+.|-.-+... +-
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455555667777777777666554433 35555665554433 333344445555555566666555433321 11
Q ss_pred HHHHHHhh--ccHHHHHHHHHHHH
Q 039931 641 TLMNGVCC--DILDRAIIIAAKLL 662 (783)
Q Consensus 641 ~li~~~~~--~~~~~A~~~~~~~~ 662 (783)
..-.-||. .++.+|..+|-..+
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHc
Confidence 11111221 45666666665543
No 403
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.75 E-value=3.9e+02 Score=27.32 Aligned_cols=78 Identities=13% Similarity=0.200 Sum_probs=49.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc---CCCCChhHHH--HHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCH-HHH
Q 039931 536 IIINGFCKQGRMKPAIDAFMDMYRT---GLVPDIVTYN--TLIGGYCKALDIVRADELVNKMYA-----GGLDPDI-TTY 604 (783)
Q Consensus 536 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~-~~~ 604 (783)
.++...-+.++.++|+++++++.+. --.|+.+.|. .....+...|+..++.+.+++..+ .|++|++ ..|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3344555667888888888887743 1245665553 344556677888888888887776 5666655 335
Q ss_pred HHHHHHHHh
Q 039931 605 NIRMHGYCN 613 (783)
Q Consensus 605 ~~li~~~~~ 613 (783)
+.+-.-|.+
T Consensus 160 Y~lssqYyk 168 (380)
T KOG2908|consen 160 YSLSSQYYK 168 (380)
T ss_pred HHHHHHHHH
Confidence 555544443
No 404
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.61 E-value=19 Score=36.30 Aligned_cols=99 Identities=12% Similarity=-0.045 Sum_probs=74.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChh
Q 039931 112 HGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIR 191 (783)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 191 (783)
.-....|.++.|++.|...+..+ ++....|.--.+++++.++...|+.-++..+..++ .....|-.-..+....|+++
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~-Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP-DSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCc-ccccccchhhHHHHHhhchH
Confidence 34456788999999999999887 56666677777888899999999999998887653 23334544455566789999
Q ss_pred hHHHHHHHHHhCCCCCCHHhH
Q 039931 192 IGESLLHVMHKYMCVADFFAY 212 (783)
Q Consensus 192 ~A~~~~~~m~~~g~~~~~~~~ 212 (783)
+|...|....+.++.+....+
T Consensus 200 ~aa~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHHHhccccHHHHHH
Confidence 999999999888765544433
No 405
>PRK10941 hypothetical protein; Provisional
Probab=41.57 E-value=3.5e+02 Score=26.95 Aligned_cols=65 Identities=8% Similarity=-0.030 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
...+.|-.+|.+.++++.|+++.+.++..+ +.+..-+.--.-.|.+.|.+..|..-++..++.-|
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 356667777778888888888888877776 45556666666667777888888777777766544
No 406
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.98 E-value=1e+02 Score=21.14 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=22.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 115 LRVEMSAEVMEILYRMREVGIMPSESAITILFK 147 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 147 (783)
.+.|...++...+++|.+.|+.-+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777777666666554
No 407
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=40.50 E-value=4.1e+02 Score=26.94 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=7.9
Q ss_pred hcCChHHHHHHHHHHHH
Q 039931 543 KQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m~~ 559 (783)
+.|+..+|.+.|+++.+
T Consensus 287 klGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhhHHHHHHHHHHHhh
Confidence 34444444444444443
No 408
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.32 E-value=61 Score=23.69 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 039931 669 NVVTTNVLLSHFCKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 669 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 698 (783)
|..-.-.+|.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455678889999999999988877754
No 409
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.90 E-value=3.1e+02 Score=25.47 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------
Q 039931 462 VAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLL------------- 528 (783)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~------------- 528 (783)
+.|.....+-++.-+.+++-+.+- ..+-.+++..|-+..++.++.++++.|.+..+.
T Consensus 108 vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~ 177 (233)
T PF14669_consen 108 VPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKL 177 (233)
T ss_pred CCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCcccc
Confidence 345555555555545444333221 112234566677777888888888877664221
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 039931 529 -PDNFTFNIIINGFCKQGRMKPAIDAFM 555 (783)
Q Consensus 529 -p~~~~~~~li~~~~~~g~~~~A~~~~~ 555 (783)
+--...|.....+.+.|.++.|+.+++
T Consensus 178 asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 178 ASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred CchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 222344555556666666666666665
No 410
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.83 E-value=1.2e+02 Score=30.80 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=62.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHhHHHHHHHHHh
Q 039931 146 FKSLLRVGDYGSVWKLFRDMIHLG---PRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVAD-FFAYNILINAYCI 221 (783)
Q Consensus 146 l~~l~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 221 (783)
.+-|.+..++..|...|.+-++.. +..+.+.|+.-..+-.-.|++..|+.-....++.. |+ ...|-.=..++..
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~--P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK--PTHLKAYIRGAKCLLE 165 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC--cchhhhhhhhhHHHHH
Confidence 455778889999999998888753 33456677777777777888888888888777654 33 3333333344445
Q ss_pred cCCcchHhhhccchHHHHHH
Q 039931 222 RGQTSYALGKCGAGRMIFDM 241 (783)
Q Consensus 222 ~g~~~~A~~~~~~a~~~~~~ 241 (783)
..++++|+.+|+++.++.++
T Consensus 166 Le~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHhhhhhhhHH
Confidence 56666776666655544443
No 411
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=39.49 E-value=1.3e+02 Score=21.11 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=19.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039931 607 RMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTL 642 (783)
Q Consensus 607 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 642 (783)
+.-++.+.|++++|.+..+.+++ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 44566677777777777777765 45665444443
No 412
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.38 E-value=58 Score=19.20 Aligned_cols=28 Identities=11% Similarity=-0.115 Sum_probs=17.6
Q ss_pred CChhhHHHHHHHHhhcCCCCCHHHHHHHH
Q 039931 684 GMPEKTLLWGQKLSEISFDFDETSYKIMD 712 (783)
Q Consensus 684 g~~~~A~~~~~~~~~~~~~~d~~~~~~l~ 712 (783)
|+.+.|..++++++...|. +...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~-~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPK-SVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC-ChHHHHHHH
Confidence 4567777777777766653 555664443
No 413
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=38.86 E-value=1.9e+02 Score=24.68 Aligned_cols=46 Identities=9% Similarity=0.146 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 480 AYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK 525 (783)
Q Consensus 480 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 525 (783)
..+-++.+....+.|++.....-+.+|.+.+++..|.++|+-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555566666666666677777777777777776665544
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.82 E-value=2e+02 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=17.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhc
Q 039931 676 LLSHFCKQGMPEKTLLWGQKLSEI 699 (783)
Q Consensus 676 ll~~~~~~g~~~~A~~~~~~~~~~ 699 (783)
+.......|++++|+..+++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333456778888888888887774
No 415
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.97 E-value=2.1e+02 Score=22.84 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 138 SESAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 138 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
|....-.+...+...|++++|++.+-++++.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344444444555555555555555554444
No 416
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=37.39 E-value=4.8e+02 Score=26.83 Aligned_cols=79 Identities=5% Similarity=-0.129 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHH
Q 039931 478 DEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCK---QGRMKPAIDAF 554 (783)
Q Consensus 478 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~ 554 (783)
+.-+.++++..+.+ +.+.......+..+.+..+.++..+.++++...... +...|...++.... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666655552 334445555666666666666666666666665333 55556555554332 12344444444
Q ss_pred HHHH
Q 039931 555 MDMY 558 (783)
Q Consensus 555 ~~m~ 558 (783)
.+.+
T Consensus 126 ~~~l 129 (321)
T PF08424_consen 126 EKCL 129 (321)
T ss_pred HHHH
Confidence 4433
No 417
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.38 E-value=12 Score=37.67 Aligned_cols=54 Identities=20% Similarity=0.121 Sum_probs=26.2
Q ss_pred hccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 648 CDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 648 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
.|.++.|++.+-..++.+ .|....|.--.+++.+.+....|++-+..+.+++|+
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D 180 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD 180 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc
Confidence 344555555555554422 122233433444455555555555555555555544
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=37.25 E-value=2e+02 Score=24.55 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 039931 376 FEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEK 420 (783)
Q Consensus 376 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 420 (783)
.+-+......++.|+.......+++|.+.+++..|..+|+-+..+
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 334444555566677777777777777777777777777666554
No 419
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.81 E-value=4.1e+02 Score=25.87 Aligned_cols=68 Identities=12% Similarity=-0.024 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcchhhhHHH
Q 039931 674 NVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLMGCMT 743 (783)
Q Consensus 674 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (783)
..+-..+...|++-++++....++...|. ++.+|..-+.+.+..++ ..+++.-+.+.++++|+-..++
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn-~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWN-EAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcChhhHHHH
Confidence 33444556778888888888888888876 77788777777654432 3445555667777777655543
No 420
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.86 E-value=1.5e+02 Score=27.74 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 597 LDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 597 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
..|+..+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356666666666666666666666666666554
No 421
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.65 E-value=4e+02 Score=25.45 Aligned_cols=25 Identities=4% Similarity=0.062 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 606 IRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 606 ~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
.+...+.+.|+.++|.+.|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3445566667777777777776653
No 422
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=35.60 E-value=2.3e+02 Score=24.04 Aligned_cols=66 Identities=14% Similarity=0.006 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCC-hHHHHHH----HHHHHhcCChhHHHHHHHHH
Q 039931 210 FAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPN-VVVYNAL----LNGYVKARDIDQANMLYEEM 277 (783)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l----i~~~~~~g~~~~A~~~~~~m 277 (783)
..+..|-.++...|++++++..-+.|...|++--+. ..| -..|.+. ..++-..|+.++|+.-|+..
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL--~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL--HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T--TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc--ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 344444455555555555544434444444432221 111 1223222 23456678889988888754
No 423
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.45 E-value=2.6e+02 Score=23.20 Aligned_cols=79 Identities=22% Similarity=0.098 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 039931 119 MSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLH 198 (783)
Q Consensus 119 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 198 (783)
..++|..+.+.+...+- -...+--.-+..+..+|++++|+ ..-. ....||...|.+|- -.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~~-~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLPQ-CHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHHT-TS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhcc-cCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 35666666666666542 12222223344567888888882 2221 22557777776553 357788888888888
Q ss_pred HHHhCC
Q 039931 199 VMHKYM 204 (783)
Q Consensus 199 ~m~~~g 204 (783)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 777665
No 424
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=34.86 E-value=4.8e+02 Score=26.12 Aligned_cols=189 Identities=17% Similarity=0.070 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH----cCC
Q 039931 510 GKLNEALKLEREMRQKGLLPDNFTFNIIINGFCK----QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK----ALD 581 (783)
Q Consensus 510 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~ 581 (783)
+++..+...+......+ +......+...|.. ..+..+|.+.|..+.+.| .......|...|.. ..+
T Consensus 55 ~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 55 PDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccC
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc-----
Q 039931 582 IVRADELVNKMYAGGLDPDITTYNIRMHGYCNI-----RKMN--QAAMMLDELVSAGIVPNTVTYNTLMNGVCCD----- 649 (783)
Q Consensus 582 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----- 649 (783)
..+|.+++++..+.|..+-..+...+...|... -.++ .|...+.++...+ +......+-..|..|
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCc
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------------ChhhHHHHHHHHhhcCCCCCHHHHHHH
Q 039931 650 ILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQG---------------MPEKTLLWGQKLSEISFDFDETSYKIM 711 (783)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g---------------~~~~A~~~~~~~~~~~~~~d~~~~~~l 711 (783)
+..+|...+.+.-+.|. ......+. .+...| +...|..++.+.....+.........+
T Consensus 206 d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 278 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRAL 278 (292)
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHH
No 425
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=34.81 E-value=4.6e+02 Score=25.93 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 565 DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMN 644 (783)
Q Consensus 565 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 644 (783)
|+.....+...|.+.|++.+|+..|-.-. .|+...+..++.-....|...++ |...-.+++.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~ 150 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ 150 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH
Confidence 55666667777777777777776553221 22233332233222222322222 3333345555
Q ss_pred HHhhccHHHHHHHHHHHH
Q 039931 645 GVCCDILDRAIIIAAKLL 662 (783)
Q Consensus 645 ~~~~~~~~~A~~~~~~~~ 662 (783)
.+|-+++..|...+....
T Consensus 151 yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFT 168 (260)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 556577777776665544
No 426
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.69 E-value=1.5e+02 Score=20.28 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 580 LDIVRADELVNKMYAGGLDPDITTY 604 (783)
Q Consensus 580 g~~~~A~~~~~~m~~~g~~p~~~~~ 604 (783)
|-..++..++++|.+.|+.-+...|
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHH
Confidence 3333444444444444443333333
No 427
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=34.22 E-value=2.2e+02 Score=22.52 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHHH
Q 039931 440 GDLIGAQSLWNELN 453 (783)
Q Consensus 440 g~~~~A~~~~~~~~ 453 (783)
|+.+.|.++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33334444443333
No 428
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.17 E-value=2.5e+02 Score=32.60 Aligned_cols=156 Identities=13% Similarity=0.120 Sum_probs=94.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC
Q 039931 502 LIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALD 581 (783)
Q Consensus 502 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 581 (783)
+|..+.+.|.++-|+...+. ..+- ......+|+++.|++.-..+ -|..+|..|.......|+
T Consensus 626 iIaYLqKkgypeiAL~FVkD---------~~tR---F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn 687 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKD---------ERTR---FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGN 687 (1202)
T ss_pred HHHHHHhcCCcceeeeeecC---------cchh---eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcc
Confidence 44455667777767665432 2221 12345678888888765543 366789999999889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHHHHHHH
Q 039931 582 IVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKL 661 (783)
Q Consensus 582 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~ 661 (783)
.+-|+..+++... |+.|--.|.-.|+.++-.++.+.... +-|..+ ....++.-++.++-.++++..
T Consensus 688 ~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~---r~D~~~--~~qnalYl~dv~ervkIl~n~ 753 (1202)
T KOG0292|consen 688 HQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI---RNDATG--QFQNALYLGDVKERVKILENG 753 (1202)
T ss_pred hHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh---hhhhHH--HHHHHHHhccHHHHHHHHHhc
Confidence 9999988888765 44455556777888877666555432 223322 122223336666665555442
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 039931 662 LKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 662 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 698 (783)
|.-| ..|.+- ..+|.-++|.++.++...
T Consensus 754 ---g~~~--laylta----~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 754 ---GQLP--LAYLTA----AAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred ---Cccc--HHHHHH----hhcCcHHHHHHHHHhhcc
Confidence 2222 223221 457888888888888766
No 429
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=33.85 E-value=6.1e+02 Score=27.05 Aligned_cols=91 Identities=15% Similarity=0.081 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039931 325 DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK 404 (783)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 404 (783)
|-++.-|...|+..+|.+..+++...-.. +...-.+++.+....-.-...+.++.+-... +...-+.+.+++.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vsffh-he~vkralv~ame~~~ae~l~l~llke~~e~----glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVSFFH-HEGVKRALVDAMEDALAEGLTLKLLKEGREE----GLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCCchh-hHHHHHHHHHHHhhhhcccceeccchhhhhh----cchhhhccccCchhh
Confidence 45566688888888888887776543111 2223333333332222222223333333333 233344455555554
Q ss_pred CC--------hhHHHHHHHHHHHc
Q 039931 405 GR--------LPEAWDLLCKMIEK 420 (783)
Q Consensus 405 g~--------~~~a~~~~~~~~~~ 420 (783)
+. ...|...|+.+.-+
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~K 316 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPK 316 (645)
T ss_pred ccccccccccCcchhhhhhhhccc
Confidence 42 44566666665543
No 430
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.80 E-value=2.4e+02 Score=22.60 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 039931 607 RMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 607 li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+.......|+.++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555666777777777777653
No 431
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.34 E-value=6.1e+02 Score=26.84 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=24.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--HhcCChHHHHHHHHHHHH
Q 039931 508 NRGKLNEALKLEREMRQKGLLPDNF--TFNIIINGF--CKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 508 ~~g~~~~A~~l~~~m~~~~~~p~~~--~~~~li~~~--~~~g~~~~A~~~~~~m~~ 559 (783)
+.+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455555555555555554 333222 233333333 234455566666665544
No 432
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.07 E-value=99 Score=30.95 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 039931 359 FNSIIAAYSRAGLEENAFEAYKIMHQFGLT 388 (783)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 388 (783)
|+..|....+.|++++|+.++++.++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555666666666666666666665544
No 433
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=32.98 E-value=5.1e+02 Score=25.84 Aligned_cols=121 Identities=11% Similarity=-0.001 Sum_probs=52.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhC-----CCCCCHhH--------HHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHH
Q 039931 259 NGYVKARDIDQANMLYEEMRSR-----DIAPDAVT--------FNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYD 325 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t--------~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 325 (783)
+.+.-..|+..|++.-++-.+. +...+..+ ...=|.+++..+++.++....-+.-+.--+....+..
T Consensus 43 d~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIle 122 (309)
T PF07163_consen 43 DLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILE 122 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH
Confidence 3444556677777776665442 01111111 1122455555566655554443333221112223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-----cCCHHHHHHHH
Q 039931 326 ITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR-----AGLEENAFEAY 379 (783)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-----~g~~~~A~~~~ 379 (783)
.-|-.|.|.++...+.++-..-+...-..+...|.+++..|.. .|.+++|.++.
T Consensus 123 LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 123 LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3334455555555555555544443212223334444444433 35555555444
No 434
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=32.92 E-value=5e+02 Score=26.62 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH-H
Q 039931 571 TLIGGYCKALDIVRADELVNKMYAG---GLDPDITTYNI--RMHGYCNIRKMNQAAMMLDELVS-----AGIVPNTVT-Y 639 (783)
Q Consensus 571 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~-~ 639 (783)
.++...-+.++.++|.++++++.+. --.|+.+.|.. ...++...|+.+++.+.+++..+ .|+.|++.+ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3444555666888888888887762 22456655543 44666677888888887777665 456665533 4
Q ss_pred HHHHH
Q 039931 640 NTLMN 644 (783)
Q Consensus 640 ~~li~ 644 (783)
+.+-.
T Consensus 160 Y~lss 164 (380)
T KOG2908|consen 160 YSLSS 164 (380)
T ss_pred HHHHH
Confidence 44433
No 435
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=32.73 E-value=98 Score=33.00 Aligned_cols=106 Identities=12% Similarity=0.047 Sum_probs=73.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 039931 111 LHGYLRVEMSAEVMEILYRMREVGIMPSESA-ITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC 189 (783)
Q Consensus 111 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 189 (783)
+..+.+.+.++.|...+.++++.. |+... |..-..++++.+++..|+.=+...++..| -....|---..++.+.++
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP-~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDP-TYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCc-hhhheeeeccHHHHhHHH
Confidence 344556677888999999988875 54433 33334678899999999999988888764 223344444556667778
Q ss_pred hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 039931 190 IRIGESLLHVMHKYMCVADFFAYNILINAYCI 221 (783)
Q Consensus 190 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 221 (783)
+.+|+..|+...+. .|+..-....++-|-+
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHHHH
Confidence 88888888877654 5777777666665543
No 436
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.71 E-value=2.6e+02 Score=25.78 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=22.4
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039931 468 INGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCN 508 (783)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 508 (783)
+..|.+.|.+++|.++++..... |+......-+....+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~ 155 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Confidence 34677777777777777777662 444444444433333
No 437
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.63 E-value=8.8e+02 Score=28.50 Aligned_cols=276 Identities=13% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 039931 294 SGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEE 373 (783)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 373 (783)
+.|...|+++.|.++-+.- +..-..++..-...|...+++..|-+++.++.+. +..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~--------FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAETLSS--------FEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--------HHHHHHHHHhcCCHH
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH------HHhcCChh----HHHHHHHHHHHc---------CCCCCHhhHHHHHH
Q 039931 374 NAFEAYKIMHQFGLTPSSCTCSSLLVG------LCKKGRLP----EAWDLLCKMIEK---------GFPINKVAFTVLLD 434 (783)
Q Consensus 374 ~A~~~~~~m~~~~~~p~~~~~~~li~~------~~~~g~~~----~a~~~~~~~~~~---------~~~~~~~~~~~li~ 434 (783)
++..|-.=+-..++|...+-..++.. +.+.++++ ++.+-++.-.+. ...-+...+.+...
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH-------------------------Hh
Q 039931 435 GYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEM-------------------------SR 489 (783)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------------------------~~ 489 (783)
.+...|+.+....+-.-+.. |..++.-+++.+.+++|++++..- ..
T Consensus 513 l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~ 583 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMA 583 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHH
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039931 490 IGFVPNNFAYNSLIAGFCNR---GKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDI 566 (783)
Q Consensus 490 ~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 566 (783)
.+-.....-...++..+.+. .....+...++--...-..-++..+|.++..|++..+-+.-..+-..+...+- ..
T Consensus 584 ~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~--~~ 661 (911)
T KOG2034|consen 584 QKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSR--VH 661 (911)
T ss_pred ccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhcccc--ce
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039931 567 VTYNTLIGGYCKALDIVRADELVNKMY 593 (783)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 593 (783)
.-....++.|.+.+....+..++..|.
T Consensus 662 YDl~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 662 YDLDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred ecHHHHHHHHHHhCccceeeeHHHHHH
No 438
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.47 E-value=90 Score=23.13 Aligned_cols=49 Identities=14% Similarity=0.006 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGD 154 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~ 154 (783)
..++.|+..+++..-.++++..++++...|. -+..+|---++.++|...
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF 57 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQF 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 4677888888887778888888888888884 677777777777766433
No 439
>PHA02798 ankyrin-like protein; Provisional
Probab=31.91 E-value=4.2e+02 Score=29.19 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=23.9
Q ss_pred HHHHHHHHCCCCCChH---HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 039931 237 MIFDMIQEEGLSPNVV---VYNALLNGYVKARDIDQANMLYEEMRSRDIAPDA 286 (783)
Q Consensus 237 ~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 286 (783)
++.+.+.+.|..+|.. -.+.|..+......+....++.+.+.+.|..+|.
T Consensus 52 ~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~ 104 (489)
T PHA02798 52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINK 104 (489)
T ss_pred HHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCC
Confidence 4666666777665531 1122221111111223345667777777765554
No 440
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.44 E-value=4.4e+02 Score=24.62 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=12.3
Q ss_pred HhcCChhhHHHHHHHHhh
Q 039931 681 CKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 681 ~~~g~~~~A~~~~~~~~~ 698 (783)
.+.|++++|.++++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 456777888777666654
No 441
>PF09127 Leuk-A4-hydro_C: Leukotriene A4 hydrolase, C-terminal; InterPro: IPR015211 This C-terminal domain is found in peptidases belonging to MEROPS peptidase family M1, particularly: aminopeptidase-1 of Caenorhabditis elegans, aminopeptidase O, aminopeptidase B and the bifunctional leukotriene A4 hydrolase/aminopeptidase. The domain adopts a structure consisting of two layers of parallel alpha-helices, five in the inner layer and four in the outer, arranged in an antiparallel manner, with perpendicular loops containing short helical segments on top. It is required for the formation of a deep cleft harbouring the catalytic Zn2+ site in leukotriene A4 hydrolase []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0019370 leukotriene biosynthetic process; PDB: 3FUJ_A 3FU3_A 3FTX_A 3FTS_A 3B7R_L 2VJ8_A 3FTW_A 3FUF_A 3FU0_A 3CHO_A ....
Probab=31.41 E-value=1.3e+02 Score=26.62 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=24.9
Q ss_pred ccccccccc--ccccchHHHHHHHHh-----cCCHHHHHHHHHHhhcCC
Q 039931 5 EKGYILKAF--SQKFCPYFLVKVMKL-----LETRETAFAFFKLVVCDD 46 (783)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~al~~f~~~~~~~ 46 (783)
+...+|+.+ +.+++|..+.++=+. .+|.+..+++|.-+.+.+
T Consensus 35 Q~~~FL~~L~~~~~l~~~~l~~Ld~~y~l~~s~NaEI~~rW~~l~i~~~ 83 (143)
T PF09127_consen 35 QWVVFLDQLLEPKPLSPEKLQALDKVYKLSNSKNAEIRFRWLRLAIKAK 83 (143)
T ss_dssp HHHHHHHHHHTCCG-CHHHHHHHHHHHCHCT-SSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Confidence 445667777 777777777666332 245566666666666544
No 442
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.31 E-value=2.9e+02 Score=24.38 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=40.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 039931 126 ILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG 188 (783)
Q Consensus 126 ~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 188 (783)
+...+.+.|++++. .-..++..+...++.-.|.++|+++.+.+|..+..|-...++.+...|
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33445566665543 344677777778777888888888888887776666444455555544
No 443
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=30.67 E-value=5.2e+02 Score=25.28 Aligned_cols=55 Identities=9% Similarity=-0.020 Sum_probs=26.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-C-CCCChhHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRT-G-LVPDIVTYNTLIGGYC-KALDIVRADELVNKM 592 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m 592 (783)
....-+.++++++....+++.+. + ..++..-.+.|-.+|- ..|....+++++..+
T Consensus 8 Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~si 65 (244)
T smart00101 8 AKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSI 65 (244)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHH
Confidence 34444556666666666655543 2 2344444554444442 234444555555443
No 444
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.62 E-value=3e+02 Score=25.39 Aligned_cols=22 Identities=9% Similarity=0.379 Sum_probs=15.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 039931 573 IGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 573 i~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456677777777777777665
No 445
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=30.56 E-value=2.8e+02 Score=22.10 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 039931 99 LFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMP-SESAITILFKSLL 150 (783)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~ll~~l~ 150 (783)
..|.|+..--.|...+...|++++|+..+-.+.+.+... +...-..|+..+-
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~ 69 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFE 69 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHH
Confidence 457788888899999999999999999999988875322 2333444444443
No 446
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.55 E-value=1e+03 Score=28.70 Aligned_cols=247 Identities=12% Similarity=-0.009 Sum_probs=147.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 039931 354 PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLL 433 (783)
Q Consensus 354 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 433 (783)
+|..+-...+..+.+.+..+ +...+..+.+. ++...-...+.++.+.+........+..+... +|..+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 57777777777777777544 55555555532 34444445555555443222122333333333 4666666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 039931 434 DGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLN 513 (783)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 513 (783)
..+...+..+ ...+.. ..+ .+|...-...+.++.+.+..+. +..... .++...-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 7776554222 222333 332 2366555666777776655432 222332 356666666777777766543
Q ss_pred H-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039931 514 E-ALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKM 592 (783)
Q Consensus 514 ~-A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 592 (783)
. +...+..+.+ .+|...-.+.+.++.+.|..+.+...+..+++ .++...-...+.++...+. +++...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 3 3444555554 34777788888899998887666555666665 4676677777888877765 4566777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 593 YAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 593 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.+ .|+..+-...+.++.+.+.-..+...+...++
T Consensus 847 L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred hc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 65 57777777777777776444567777777765
No 447
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=30.40 E-value=72 Score=33.87 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHH---HHH----HHCCCCCCHHHHHHHHHHHhhccHH
Q 039931 583 VRADELVNKMYAGGLDPD---ITTYNIRMHGYCNIRKMNQAAMML---DEL----VSAGIVPNTVTYNTLMNGVCCDILD 652 (783)
Q Consensus 583 ~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~---~~m----~~~g~~p~~~~~~~li~~~~~~~~~ 652 (783)
..+..+++-+...|+.-. ..+|+.- |.+.-.+++++.-+ +++ .+.|+..+..++.-+...+|-.-+.
T Consensus 108 ~d~~~l~e~~~a~g~~a~egg~isy~~p---y~k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~~~l~pptla 184 (428)
T cd00245 108 PDARLLAEIAIASGFDATEGGPISYNLP---YSKNVPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLTGTLVPPSIL 184 (428)
T ss_pred ccHHHHHHHHHHhCcccccccceeeccc---cCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCcccCcCCcHHH
Confidence 345556666665554332 2344332 33444566666655 333 2467777777776666555556677
Q ss_pred HHHHHHHHHHHcCCCCCHH
Q 039931 653 RAIIIAAKLLKMAFVPNVV 671 (783)
Q Consensus 653 ~A~~~~~~~~~~~~~p~~~ 671 (783)
-|..+++.++..+.-.+..
T Consensus 185 ~aiaylea~la~glgV~~l 203 (428)
T cd00245 185 IAIQILEALLAAEQGVKSI 203 (428)
T ss_pred HHHHHHHHHHHccCCCCEE
Confidence 8888888877766655553
No 448
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.26 E-value=5.9e+02 Score=25.72 Aligned_cols=55 Identities=9% Similarity=0.026 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 039931 254 YNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSV 314 (783)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 314 (783)
--.++..+.+.++..+..+.++.+. ....-...+..+...|++..|.+++.+..+
T Consensus 101 ~L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 101 GLEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3345555666666666666666664 233444556666677788777777766544
No 449
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.49 E-value=2.9e+02 Score=21.93 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=17.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 039931 404 KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLI 443 (783)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 443 (783)
.|+.+.|.+++..+. +| +..|..+++++...|.-.
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 355555555555554 32 234555555555544433
No 450
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=29.33 E-value=5.8e+02 Score=29.42 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 547 MKPAIDAFMDMY-RTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 547 ~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.++....+.... +.|+..+......++... .|++..++.+++++..
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 344445554444 446666666666666553 5888888888877665
No 451
>PF15469 Sec5: Exocyst complex component Sec5
Probab=29.21 E-value=4.6e+02 Score=24.15 Aligned_cols=111 Identities=16% Similarity=0.074 Sum_probs=53.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHhhc
Q 039931 572 LIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSA-GIVP-NTVTYNTLMNGVCCD 649 (783)
Q Consensus 572 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~ 649 (783)
++..-.+..++..++.++++..- ....-.-+.-+.+.|+++.++..|.+.... +-.. ....+..+..
T Consensus 63 ll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~----- 131 (182)
T PF15469_consen 63 LLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWS----- 131 (182)
T ss_pred HHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-----
Confidence 33333344444555555554432 111224456677788888888888777641 1111 2223333221
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHH
Q 039931 650 ILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDET 706 (783)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~ 706 (783)
..++...-+++. .|..|.. -....++..+++..+.+++++.||+
T Consensus 132 eve~ii~~~r~~----------l~~~L~~---~~~s~~~~~~~i~~Ll~L~~~~dPi 175 (182)
T PF15469_consen 132 EVEKIIEEFREK----------LWEKLLS---PPSSQEEFLKLIRKLLELNVEEDPI 175 (182)
T ss_pred HHHHHHHHHHHH----------HHHHHhC---CCCCHHHHHHHHHHHHhCCCCCCHH
Confidence 122222222211 1111111 0145677788888888888875554
No 452
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.02 E-value=2.5e+02 Score=29.81 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--C----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 568 TYNTLIGGYCKALDIVRADELVNKMYA--G----GLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
+...|++.++-.|++..|+++++.+.- . .+.+ ...+|..+.-+|...+++.+|++.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666777777666654421 1 1112 33556666777777777777777777664
No 453
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=28.99 E-value=97 Score=31.01 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=29.9
Q ss_pred CChHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHH
Q 039931 249 PNVVV-YNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTF 289 (783)
Q Consensus 249 p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 289 (783)
|+..+ ||.-|..-.+.||+++|++++++..+.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44444 568888888888888888888888888876333333
No 454
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.85 E-value=5.5e+02 Score=24.97 Aligned_cols=17 Identities=6% Similarity=0.042 Sum_probs=7.6
Q ss_pred HHHcCCHHHHHHHHHHH
Q 039931 576 YCKALDIVRADELVNKM 592 (783)
Q Consensus 576 ~~~~g~~~~A~~~~~~m 592 (783)
......+++|+..+.+.
T Consensus 88 ~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHhhccccHHHHHHHHH
Confidence 33444444444444444
No 455
>PHA03100 ankyrin repeat protein; Provisional
Probab=28.51 E-value=5.6e+02 Score=27.98 Aligned_cols=14 Identities=7% Similarity=0.214 Sum_probs=5.8
Q ss_pred HHHHHHHHHCCCCC
Q 039931 236 RMIFDMIQEEGLSP 249 (783)
Q Consensus 236 ~~~~~~m~~~g~~p 249 (783)
.++++.+.+.|..|
T Consensus 48 ~~ivk~Ll~~g~~~ 61 (480)
T PHA03100 48 IDVVKILLDNGADI 61 (480)
T ss_pred HHHHHHHHHcCCCC
Confidence 33444444444433
No 456
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.18 E-value=1e+03 Score=27.98 Aligned_cols=112 Identities=15% Similarity=0.211 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVA 329 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 329 (783)
+..+|..|...-.+.|+.+-|...|++.+. |.-|--.|.-.|+.++-.++...+..++ |... ...
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~---~~q 735 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATG---QFQ 735 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHH---HHH
Confidence 667888888888888888888777776653 2333334555677776666555443321 1111 111
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 039931 330 GLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF 385 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 385 (783)
.-.-.|++++-.++++..-. . + ..|-+ -...|.-++|.++.++....
T Consensus 736 nalYl~dv~ervkIl~n~g~---~-~-laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 736 NALYLGDVKERVKILENGGQ---L-P-LAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHhccHHHHHHHHHhcCc---c-c-HHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 12235677776666654332 1 1 11211 12356677788887777654
No 457
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=27.96 E-value=6.6e+02 Score=25.55 Aligned_cols=29 Identities=7% Similarity=-0.054 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 496 NFAYNSLIAGFCNRGKLNEALKLEREMRQ 524 (783)
Q Consensus 496 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 524 (783)
...-..++.+.+...+.+...++++....
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 33344444444444444444444444444
No 458
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.71 E-value=3.6e+02 Score=22.42 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 039931 177 FNALILGFCRNGCIRIGESLLHVMHK 202 (783)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 202 (783)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77788888888888888888888776
No 459
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.15 E-value=6.9e+02 Score=25.53 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=88.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC
Q 039931 491 GFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK-GLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYR----TGLVPD 565 (783)
Q Consensus 491 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~ 565 (783)
.+..|...+++|..+ +..++++-.+..+...+. |-.--...+-.....||+.|+.+.|.+.+.+..+ .|.+-|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 455666666666543 222333333334444333 2222345667778899999999999988876554 466777
Q ss_pred hhHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 039931 566 IVTYNTLIG-GYCKALDIVRADELVNKMYAGGLDPDI----TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYN 640 (783)
Q Consensus 566 ~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 640 (783)
++.+.+=+. .|....-+.+-++..+.+.+.|-..+. .+|..+- +....++++|-.+|-+....=-.-...+|.
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~ 220 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYE 220 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcccccceecccHH
Confidence 665544333 344444566777777888888876654 3343332 345578999999887765311112234566
Q ss_pred HHHH
Q 039931 641 TLMN 644 (783)
Q Consensus 641 ~li~ 644 (783)
.++.
T Consensus 221 ~~v~ 224 (393)
T KOG0687|consen 221 TFVR 224 (393)
T ss_pred HHHH
Confidence 6654
No 460
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.95 E-value=7.7e+02 Score=26.01 Aligned_cols=54 Identities=15% Similarity=-0.005 Sum_probs=39.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhH----HHHHHHHHH--HcCCHHHHHHHHHH
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRTGLVPDIVT----YNTLIGGYC--KALDIVRADELVNK 591 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~li~~~~--~~g~~~~A~~~~~~ 591 (783)
+..+.+.+++..|.++|+++....++|+... |..+..+|. ..-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4456789999999999999998866565444 333444442 46778888888876
No 461
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.61 E-value=7e+02 Score=27.20 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=6.0
Q ss_pred HHHHHHHCCCCCC
Q 039931 126 ILYRMREVGIMPS 138 (783)
Q Consensus 126 ~~~~~~~~g~~~~ 138 (783)
+++.+++.|..|+
T Consensus 50 ivk~Ll~~g~~~~ 62 (480)
T PHA03100 50 VVKILLDNGADIN 62 (480)
T ss_pred HHHHHHHcCCCCC
Confidence 3444444554443
No 462
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=26.41 E-value=1.4e+02 Score=31.92 Aligned_cols=100 Identities=12% Similarity=0.020 Sum_probs=49.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHcCCHH
Q 039931 506 FCNRGKLNEALKLEREMRQKGLLPDNFTFN-IIINGFCKQGRMKPAIDAFMDMYRTGLVPD-IVTYNTLIGGYCKALDIV 583 (783)
Q Consensus 506 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 583 (783)
+.+.+.++.|..++.+.++. .||...|- .=..++.+.+++..|+.=+..+++. .|+ ...|..=..++.+.+.+.
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHHHHH
Confidence 34455566666666666654 33333222 2224555566666666555555543 232 223333334444555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 584 RADELVNKMYAGGLDPDITTYNIRMHGY 611 (783)
Q Consensus 584 ~A~~~~~~m~~~g~~p~~~~~~~li~~~ 611 (783)
+|...|+.... +.|+..-....++-|
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 55555555554 455555444444433
No 463
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=26.30 E-value=5.3e+02 Score=31.66 Aligned_cols=134 Identities=10% Similarity=-0.016 Sum_probs=77.6
Q ss_pred HHHHHhcCChhhHHH------HHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHH
Q 039931 181 ILGFCRNGCIRIGES------LLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVY 254 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~------~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~ 254 (783)
.......|.+.+|.+ ++...-..--++....|..|...+-+.|+.++|+.....|.-+-+++......-+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 444555666776666 55532222114455678888888999999999987766665555555544433345566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCH-hHHHHHHHHHHccCChhHHHHHHHHHHh
Q 039931 255 NALLNGYVKARDIDQANMLYEEMRSR-----DI-APDA-VTFNIIVSGHCKYGGMEDGDRLLRDLSV 314 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 314 (783)
..+.......+....|...+.+.... |. .|.. .+++.+-..+...++++.|.+.++.+.+
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66666666677777777777666542 21 2332 2333332223333555555555555443
No 464
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=25.71 E-value=2.2e+02 Score=22.10 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=5.8
Q ss_pred HHHHHHHCCCCCCh
Q 039931 238 IFDMIQEEGLSPNV 251 (783)
Q Consensus 238 ~~~~m~~~g~~p~~ 251 (783)
+++.+.+.|..++.
T Consensus 41 ~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 41 IVKLLLENGADINS 54 (89)
T ss_dssp HHHHHHHTTTCTT-
T ss_pred HHHHHHHhcccccc
Confidence 34444444444433
No 465
>PHA02989 ankyrin repeat protein; Provisional
Probab=25.51 E-value=9.3e+02 Score=26.49 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=22.8
Q ss_pred HHHHHHHCCCCCChHHH-HHHHHHHHhcCCh--hHHHHHHHHHHhCCCCCCH
Q 039931 238 IFDMIQEEGLSPNVVVY-NALLNGYVKARDI--DQANMLYEEMRSRDIAPDA 286 (783)
Q Consensus 238 ~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~ 286 (783)
+.+.+.+.|..+|...+ .+-+....+.+.. ....++.+.+.+.|..+|.
T Consensus 52 iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 103 (494)
T PHA02989 52 IVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINL 103 (494)
T ss_pred HHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCC
Confidence 45555566665553211 1122233333322 2334566666777765543
No 466
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.15 E-value=3.9e+02 Score=23.58 Aligned_cols=63 Identities=22% Similarity=0.161 Sum_probs=44.1
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 039931 237 MIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYG 300 (783)
Q Consensus 237 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 300 (783)
++...+.+.|++++. --..++..+.+.++.-.|.++|+++.+.++.-+..|....++.+...|
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 455666677776544 345677788888888999999999998877766666555556555555
No 467
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.06 E-value=8.7e+02 Score=26.00 Aligned_cols=170 Identities=12% Similarity=-0.021 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhC---CC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039931 441 DLIGAQSLWNELNRR---KI-FPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEAL 516 (783)
Q Consensus 441 ~~~~A~~~~~~~~~~---~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 516 (783)
..++...+++..... +. ..+......++... .|+...++.+++.+... ...=..+...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~----------------~~~It~~~v~ 213 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG----------------VDSITLELLE 213 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc----------------cCCCCHHHHH
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC-----CHHHHHHH
Q 039931 517 KLEREMRQKGLLPDNFTFNIIINGFCKQ---GRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL-----DIVRADEL 588 (783)
Q Consensus 517 ~l~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~ 588 (783)
+++.......-. +......+++++.+. ++.+.|+..+..|++.|..|....-..++.++...| ...-|...
T Consensus 214 ~~~~~~~~~~d~-~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~ 292 (413)
T PRK13342 214 EALQKRAARYDK-DGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAA 292 (413)
T ss_pred HHHhhhhhccCC-CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 589 VNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 589 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
++....-|++--.......+-.++.+-+...+...+++..+
T Consensus 293 ~~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 293 ADAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 468
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=24.93 E-value=4e+02 Score=22.10 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 039931 394 CSSLLVGLCKKGRLPEAWDLLCKMIE 419 (783)
Q Consensus 394 ~~~li~~~~~~g~~~~a~~~~~~~~~ 419 (783)
|..++..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555554444
No 469
>PRK09857 putative transposase; Provisional
Probab=24.79 E-value=7.4e+02 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=11.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039931 537 IINGFCKQGRMKPAIDAFMDMYRTGLV 563 (783)
Q Consensus 537 li~~~~~~g~~~~A~~~~~~m~~~g~~ 563 (783)
+..-+.+.|.-+++.++..+|...|+.
T Consensus 246 iAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 246 IAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333444444434444444444444443
No 470
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=24.05 E-value=6.1e+02 Score=31.16 Aligned_cols=161 Identities=15% Similarity=0.008 Sum_probs=89.9
Q ss_pred HHHHhcCChHHHHH------HHHH-HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH-------HHhcCCCCCHHHH
Q 039931 112 HGYLRVEMSAEVME------ILYR-MREVGIMPSESAITILFKSLLRVGDYGSVWKLFRD-------MIHLGPRPSNYTF 177 (783)
Q Consensus 112 ~~~~~~g~~~~A~~------~~~~-~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~-------~~~~~~~~~~~~~ 177 (783)
+.....|.+.+|.+ ++.+ |.... ++....|..|...+-+.|+.++|+..-.. +......-+...|
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h-~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLH-PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcc-hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 44455666776666 5653 33322 34445577788888899999998876443 3333333344456
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhC-----CC-CC-CHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCC
Q 039931 178 NALILGFCRNGCIRIGESLLHVMHKY-----MC-VA-DFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPN 250 (783)
Q Consensus 178 ~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~ 250 (783)
..+...+...++...|...+.+.... |. .| ...+++.+-..+-..++++.|+...+.|..+-+......--++
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Confidence 66666666777888888887776542 21 23 3334444444444446777776655555553333332111234
Q ss_pred hHHHHHHHHHHHhcCChhHHHHH
Q 039931 251 VVVYNALLNGYVKARDIDQANML 273 (783)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~ 273 (783)
..++..+...+.-.+++..|+..
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHH
Confidence 55566665555555555554443
No 471
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.91 E-value=6.7e+02 Score=27.83 Aligned_cols=161 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHhcCCHHHHHHHHHHhh-cCCCCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 039931 15 QKFCPYFLVKVMKLLETRETAFAFFKLVV-CDDSESTIRSCCIAAHIFAAEDLRLLAQDVVTWVISRIGAGRSKHMVEFM 93 (783)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~al~~f~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (783)
..+++.-...+++.++.|..-..|.=... .+....++.|.|...++ +.--.......+...+...+..-....++.+
T Consensus 129 ~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f--~~l~~~~i~~~l~~il~~egi~~~~~al~~i 206 (509)
T PRK14958 129 HMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHL--AQLPPLQIAAHCQHLLKEENVEFENAALDLL 206 (509)
T ss_pred HhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 039931 94 CDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPS 173 (783)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~ 173 (783)
.... ..+......++.-....|.-.--......|.. .++......++.++.. |+.+.++.+++++...|..+.
T Consensus 207 a~~s---~GslR~al~lLdq~ia~~~~~It~~~V~~~lg---~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 207 ARAA---NGSVRDALSLLDQSIAYGNGKVLIADVKTMLG---TIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHc---CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHC---CCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Q ss_pred HHHHHHHHHHH
Q 039931 174 NYTFNALILGF 184 (783)
Q Consensus 174 ~~~~~~l~~~~ 184 (783)
......+....
T Consensus 280 ~il~~l~~~~~ 290 (509)
T PRK14958 280 NALADLLSLLH 290 (509)
T ss_pred HHHHHHHHHHH
No 472
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=23.59 E-value=81 Score=31.44 Aligned_cols=58 Identities=12% Similarity=-0.114 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPNVVTTNV-LLSHFCKQGMPEKTLLWGQKLSEISFDFDETSY 708 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 708 (783)
+.+.+-..++.+.+... +.|+..|.. --.-|...++.+.+..++.+.+.++++ .+..|
T Consensus 121 k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw 179 (435)
T COG5191 121 KMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIW 179 (435)
T ss_pred HHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHH
Confidence 56666667777766532 224445532 222456778888888888888888876 66666
No 473
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=23.35 E-value=6e+02 Score=23.52 Aligned_cols=147 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc------c
Q 039931 581 DIVRADELVNKMYAGGLDPDITT----YNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCD------I 650 (783)
Q Consensus 581 ~~~~A~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~------~ 650 (783)
++++|.++|+.--+.+-.|++-- |..+..+ ...+++..|.+.++..-+.++ |+.-.|..|+..-... +
T Consensus 50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKg-G~~~~l~~a~r~~~~aC~~n~-~~aC~~~gLl~~~g~~~r~~dpd 127 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKG-GDDASLSKAIRPMKIACDANI-PQACRYLGLLHWNGEKDRKADPD 127 (248)
T ss_pred HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccC-CCccCHHHHHHHHHHHhccCC-HHHHhhhhhhhccCcCCccCCCC
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------------------------CChhhHHHHHHHHhhcCCCCCHH
Q 039931 651 LDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQ------------------------GMPEKTLLWGQKLSEISFDFDET 706 (783)
Q Consensus 651 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~------------------------g~~~~A~~~~~~~~~~~~~~d~~ 706 (783)
.++|.+++.+.-..+ |....-.|-..|... .+.+.|+++.-++=+++ .+.
T Consensus 128 ~~Ka~~y~traCdl~---~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~---~~~ 201 (248)
T KOG4014|consen 128 SEKAERYMTRACDLE---DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD---IPQ 201 (248)
T ss_pred cHHHHHHHHHhccCC---CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC---ChH
Q ss_pred HHHHHHHHHhh---hhHHHHHHHHHHhcCCCc
Q 039931 707 SYKIMDRAYHN---IQENAEFFQETSEKSLFL 735 (783)
Q Consensus 707 ~~~~l~~~y~~---~~~~~~~~~~~~~~~~~~ 735 (783)
+.-++.+.|.. +.++...++.+..++.++
T Consensus 202 aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 202 ACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
No 474
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=23.14 E-value=2.7e+02 Score=21.52 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=18.8
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 039931 238 IFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDA 286 (783)
Q Consensus 238 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 286 (783)
+++.+.+.+...+. -++.+...+..|+. ++++.+.+.|..++.
T Consensus 12 ~~~~ll~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 12 ILKFLLEKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINS 54 (89)
T ss_dssp HHHHHHHTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-
T ss_pred HHHHHHHCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccc
Confidence 44444444444343 22234444455553 344444445554443
No 475
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=23.08 E-value=4.8e+02 Score=22.34 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039931 514 EALKLEREMRQKGLLP-DNFTFNIIINGFCKQGRMKPAIDAFMD 556 (783)
Q Consensus 514 ~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 556 (783)
.+.++|+.|..+|+-- -...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666654432 344555556666666666666666654
No 476
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.97 E-value=1.5e+03 Score=27.88 Aligned_cols=121 Identities=17% Similarity=0.113 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHH
Q 039931 392 CTCSSLLVGLCKKGRLPEAWDLLCKMIEKGF---PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDA----VAF 464 (783)
Q Consensus 392 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~ 464 (783)
.-|..+++.+-+.+..+.+.++-...++.-. +.-..+++.+.+.....|.+.+|...+-.- ||. ...
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdcL 1057 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHHH
Confidence 3466777788888888888888777776522 112346777777778888888776655332 332 345
Q ss_pred HHHHHHHHccCChH------------HHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 465 SAYINGLSKAGLVD------------EAYG-VFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKL 518 (783)
Q Consensus 465 ~~li~~~~~~g~~~------------~A~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 518 (783)
..++..++.+|+++ +... +++..-+.........|+.|-.-+...+++.+|-.+
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 56666777777654 3333 222222222111223355555555677777766543
No 477
>PRK09857 putative transposase; Provisional
Probab=22.69 E-value=6e+02 Score=25.71 Aligned_cols=62 Identities=11% Similarity=0.014 Sum_probs=25.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 039931 536 IIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLD 598 (783)
Q Consensus 536 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 598 (783)
.++....+.++.++-.++++...+. .++......++..-+.+.|.-++++++..+|...|+.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333334445554445555444433 2222223333344444444434444444444444433
No 478
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.56 E-value=1.5e+03 Score=27.81 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHH
Q 039931 253 VYNALLNGYVKARDIDQANMLYEEMRSRDIAPD----AVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITV 328 (783)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 328 (783)
-|-..+..+-+.+-.+.+.++-...++. ++++ ..+++++.+-....|.+-+|...+-.-.. ..........++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHH
Confidence 3667778888888888888887777664 2222 23577777888888888877765543211 111122345566
Q ss_pred HHHHhcCCHH
Q 039931 329 AGLCWAGRLD 338 (783)
Q Consensus 329 ~~~~~~g~~~ 338 (783)
..++.+|+++
T Consensus 1062 ivLfecg~l~ 1071 (1480)
T KOG4521|consen 1062 IVLFECGELE 1071 (1480)
T ss_pred HHHHhccchH
Confidence 6677777654
No 479
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=22.53 E-value=3.4e+02 Score=20.91 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=10.9
Q ss_pred HHhcCChhhHHHHHHHHhh
Q 039931 680 FCKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~ 698 (783)
+-+.|++++|+.++.+.++
T Consensus 16 ~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 16 LDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3456666666666555444
No 480
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=22.41 E-value=1e+03 Score=25.95 Aligned_cols=78 Identities=15% Similarity=0.055 Sum_probs=55.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCChhhHHHHHHHHHhC
Q 039931 125 EILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG-FCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 125 ~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~ 203 (783)
.+++.+..+ +..|+..|...+.-+-+.+.+.+.-.+|.+|+...| .++..|-....- |-..-+++.|..+|.+-++.
T Consensus 92 ~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp-~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 92 FLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP-NNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 444444433 345888999999888888889999999999999765 455555443333 33444589999999888876
Q ss_pred C
Q 039931 204 M 204 (783)
Q Consensus 204 g 204 (783)
.
T Consensus 170 n 170 (568)
T KOG2396|consen 170 N 170 (568)
T ss_pred C
Confidence 4
No 481
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=22.18 E-value=1.8e+02 Score=27.89 Aligned_cols=51 Identities=14% Similarity=0.005 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 650 ILDRAIIIAAKLLKMAFVPN-VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
+.+-|.+++.++++ +.|+ ..+|-.+...--+.|+.+.|.+.+++.++++|+
T Consensus 10 D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 10 DAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 44445555555554 3342 245555555555566666666666666666554
No 482
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.11 E-value=1.1e+03 Score=26.22 Aligned_cols=126 Identities=11% Similarity=0.017 Sum_probs=72.4
Q ss_pred cCChhhHHHHHHHHHhCCC-----------CCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCC-----
Q 039931 187 NGCIRIGESLLHVMHKYMC-----------VADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPN----- 250 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~~g~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~----- 250 (783)
...+++|...|.-....-- +-.+.+.-.+..++...|+.+-|-+..+.|.-.|+......+.|.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3445666666655544210 112344555666677788888887777777777777765444332
Q ss_pred --------hHHHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH-ccCChhHHHHHHHHH
Q 039931 251 --------VVVYNAL---LNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHC-KYGGMEDGDRLLRDL 312 (783)
Q Consensus 251 --------~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~A~~~~~~~ 312 (783)
...|-+| |..+.+.|.+..|++..+-+.+....-|+.....+|+.|+ +..+++-..++++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2222222 3445566777777777777776655555666666666543 344555555555444
No 483
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=22.09 E-value=1.4e+02 Score=18.87 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=15.1
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh-cCChhhHHHHH
Q 039931 658 AAKLLKMAFVPNVVTTNVLLSHFCK-QGMPEKTLLWG 693 (783)
Q Consensus 658 ~~~~~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~ 693 (783)
.+++.++|+.++... .++.+ .|+++.|..++
T Consensus 6 v~~L~~mGf~~~~~~-----~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 6 VQQLMEMGFSREQAR-----EALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHTS-HHHHH-----HHHHHTTTSHHHHHHHH
T ss_pred HHHHHHcCCCHHHHH-----HHHHHcCCCHHHHHHhC
Confidence 344555566655322 13333 45777777653
No 484
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=22.02 E-value=5.4e+02 Score=22.53 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 136 MPSESAITILFKSLLRVGD---YGSVWKLFRDMIH-LGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
.++..+--.+..+++++.+ ..+.+.++++..+ ..+...-.-...|.-++.+.++++.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4555555567777777764 4566778888886 333333333445666788999999999999888765
No 485
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=21.68 E-value=7.9e+02 Score=24.30 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVA 329 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 329 (783)
+......+...|.+.|++.+|..-|-.- -.|+...+..++......|...++- ...-.+++
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~d--------------lfi~RaVL- 149 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEAD--------------LFIARAVL- 149 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--HH--------------HHHHHHHH-
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcchh--------------HHHHHHHH-
Confidence 5666777778888888888887665422 2233344433444333344433332 22222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 039931 330 GLCWAGRLDEAMEFFEDMFEK 350 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~ 350 (783)
.|.-.+++..|...++...+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 356677888888877776654
No 486
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.63 E-value=1e+03 Score=27.09 Aligned_cols=44 Identities=9% Similarity=0.079 Sum_probs=24.8
Q ss_pred HHHHHHHHH-HHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 549 PAIDAFMDM-YRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 549 ~A~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+....+... .+.|+..+......++.. ..|++..++.+++++..
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia 231 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIA 231 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 333444333 345666666666555553 35777777777766554
No 487
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=21.33 E-value=5.5e+02 Score=28.92 Aligned_cols=91 Identities=15% Similarity=0.187 Sum_probs=57.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 039931 396 SLLVGLCKKGRLPEAWDLLCKMIEK--GFPINKVAFTVLLDGYFRIGDLI------GAQSLWNELNRRKIFPDAVAFSAY 467 (783)
Q Consensus 396 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~l 467 (783)
+|+.+|...|++-.+.++++..... |-..-...+|..|+...+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999888765 22233456778888888888653 3444444433 33477777777
Q ss_pred HHHHHccCChHHHHHHHHHHHh
Q 039931 468 INGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~m~~ 489 (783)
+.+-..--+-.-..-++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7665543333333344444443
No 488
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=8.4e+02 Score=24.36 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHhHHHHHH-HHHHccCChhHHHHHHHHHHhC----CCCCcHHHHH
Q 039931 255 NALLNGYVKARDIDQANMLYEEM----RSRDIAPDAVTFNIIV-SGHCKYGGMEDGDRLLRDLSVS----GLLPNCTLYD 325 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll-~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~ 325 (783)
..+|..+.+.|.+.+|+.+...+ ++-+-.|+..+...+= ..|....++.++..-+..+... -.+|-...--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 46788888888888888765443 3444556655544432 3555566666655555444322 1123222233
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHHHH
Q 039931 326 ITVAG--LCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 326 ~li~~--~~~~g~~~~A~~~~~~m~~ 349 (783)
.|+++ .|...++..|..+|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 34443 3455667778877777665
No 489
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=20.95 E-value=7.7e+02 Score=23.91 Aligned_cols=137 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 427 VAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGF 506 (783)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 506 (783)
.....-+..|.+.-++.-|....+++.+ ...+-.+++ -|.+..+.+--.++.+-....+++-+......++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE-----PIQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh-----hHHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HhcCCHHHHHHHHHHHHHC------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 039931 507 CNRGKLNEALKLEREMRQK------------GLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTL 572 (783)
Q Consensus 507 ~~~g~~~~A~~l~~~m~~~------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 572 (783)
...|+...|+.-++.-... --.|.+.....++..|. .+++++|.+.+.++.+.|+.|....-+..
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 490
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=20.69 E-value=2.4e+02 Score=17.92 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChhhHHHH--HHHHhhcCC
Q 039931 673 TNVLLSHFCKQGMPEKTLLW--GQKLSEISF 701 (783)
Q Consensus 673 ~~~ll~~~~~~g~~~~A~~~--~~~~~~~~~ 701 (783)
|..+.-.+...|++++|+.+ ++-+-.+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 34455566778888888888 335544443
No 491
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=20.57 E-value=6.1e+02 Score=28.59 Aligned_cols=91 Identities=9% Similarity=0.133 Sum_probs=61.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 039931 291 IIVSGHCKYGGMEDGDRLLRDLSVS--GLLPNCTLYDITVAGLCWAGRLD------EAMEFFEDMFEKGISPSIFAFNSI 362 (783)
Q Consensus 291 ~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 362 (783)
+++.+|...|++-.+.++++..... |-..=...+|..|+...+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8899999999999999999988765 33334556788888888888754 3444444443 44578888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 039931 363 IAAYSRAGLEENAFEAYKIMHQ 384 (783)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~m~~ 384 (783)
+++-..--+..-.+-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776553333333444444443
No 492
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.43 E-value=4.9e+02 Score=21.42 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 039931 571 TLIGGYCKALDIVRADELVNKM 592 (783)
Q Consensus 571 ~li~~~~~~g~~~~A~~~~~~m 592 (783)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3445555566666666666554
No 493
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.36 E-value=2.2e+02 Score=32.28 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----------HHHHHHHh-h
Q 039931 583 VRADELVNKMYAGGLDPD---ITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTY----------NTLMNGVC-C 648 (783)
Q Consensus 583 ~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----------~~li~~~~-~ 648 (783)
++-..++.+|..+--.|+ ..+...++-.|....+++..+++.+.+.. .||..-+ .-.++--- .
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCC
Confidence 455667788887533454 35566667777778888999999888876 3543221 11111101 1
Q ss_pred ccHHHHHHHHHHHHH--cCCCCCHHHH--HHHHHHHHh-----cCChhhHHHHHHHHhhcCCC
Q 039931 649 DILDRAIIIAAKLLK--MAFVPNVVTT--NVLLSHFCK-----QGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~--~~~~p~~~~~--~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~ 702 (783)
|+-++|+...-.+++ .++.||.... ..+-+.+.. .+..+.|.+||+++.+..|.
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch
Confidence 567778777766654 3467775432 222333332 34567788888888887754
No 494
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=20.32 E-value=8.9e+02 Score=24.57 Aligned_cols=84 Identities=12% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCChHHH
Q 039931 481 YGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCK----------QGRMKPA 550 (783)
Q Consensus 481 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~A 550 (783)
.++++.+.+.++.|.-..+..+.-.+.+.=.+.+.+.+++.+.. |+.-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHH
Q 039931 551 IDAFMDMYRTGLVPDIVTYNTLIGG 575 (783)
Q Consensus 551 ~~~~~~m~~~g~~p~~~~~~~li~~ 575 (783)
.++++. .|++..-..+..|
T Consensus 338 mkLLQ~------yp~tdi~~~l~~A 356 (370)
T KOG4567|consen 338 MKLLQN------YPTTDISKMLAVA 356 (370)
T ss_pred HHHHhc------CCCCCHHHHHHHH
No 495
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.07 E-value=4.8e+02 Score=21.26 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=26.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 586 DELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTY 639 (783)
Q Consensus 586 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 639 (783)
.+.+++...++....+-....|.-.|++.|+-+.|.+-|+. ++.+-|.+.+|
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet--EKalFPES~~f 108 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET--EKALFPESGVF 108 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH--hhhhCccchhH
Confidence 34444444443322233334455556666666666666655 23345555544
Done!