Query 039931
Match_columns 783
No_of_seqs 859 out of 4582
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 04:58:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.6E-41 3.3E-45 379.6 40.6 523 149-716 63-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2E-40 6.7E-45 377.0 42.4 483 138-642 83-590 (597)
3 4g26_A Pentatricopeptide repea 100.0 9.2E-30 3.2E-34 276.6 25.6 204 445-648 9-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-26 1.2E-30 244.5 48.0 375 329-717 7-385 (388)
5 4g26_A Pentatricopeptide repea 100.0 4E-29 1.4E-33 271.6 25.4 204 411-614 10-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 6.8E-26 2.3E-30 242.2 49.7 363 110-489 5-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.1E-22 3.8E-27 226.0 42.1 453 105-602 7-483 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.5E-22 5.2E-27 224.9 42.2 454 140-638 7-484 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 4.9E-21 1.7E-25 208.9 40.3 378 99-516 21-445 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 8.8E-21 3E-25 206.8 41.1 389 123-551 11-445 (450)
11 3fp2_A TPR repeat-containing p 99.9 5.7E-21 1.9E-25 213.5 38.1 371 104-523 25-405 (537)
12 3fp2_A TPR repeat-containing p 99.9 1.1E-20 3.9E-25 211.0 40.1 427 84-560 39-491 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 3.6E-15 1.2E-19 170.9 68.1 499 181-764 846-1378(1630)
14 3ieg_A DNAJ homolog subfamily 99.9 6.2E-18 2.1E-22 177.8 40.6 329 355-717 2-352 (359)
15 3ieg_A DNAJ homolog subfamily 99.8 2.2E-17 7.5E-22 173.6 39.7 330 103-472 2-351 (359)
16 2xm6_A Protein corresponding t 99.8 5.9E-16 2E-20 170.3 51.6 383 320-732 38-468 (490)
17 2xm6_A Protein corresponding t 99.8 2E-15 6.8E-20 166.1 54.6 362 237-631 28-433 (490)
18 1xi4_A Clathrin heavy chain; a 99.8 3.1E-14 1.1E-18 163.2 63.6 376 255-691 989-1376(1630)
19 2ooe_A Cleavage stimulation fa 99.8 5.7E-16 2E-20 172.2 47.6 430 128-594 3-491 (530)
20 3hym_B Cell division cycle pro 99.8 1.8E-17 6.2E-22 172.1 31.8 288 423-717 19-316 (330)
21 2ooe_A Cleavage stimulation fa 99.8 1.6E-15 5.4E-20 168.7 45.9 429 162-629 2-491 (530)
22 3hym_B Cell division cycle pro 99.8 5.3E-17 1.8E-21 168.5 31.4 288 100-401 18-314 (330)
23 4g1t_A Interferon-induced prot 99.8 6.6E-16 2.2E-20 169.3 38.4 144 547-702 316-462 (472)
24 1fch_A Peroxisomal targeting s 99.8 9E-17 3.1E-21 169.8 27.1 302 299-627 38-356 (368)
25 1fch_A Peroxisomal targeting s 99.8 5.9E-17 2E-21 171.2 25.0 302 334-660 38-355 (368)
26 1b89_A Protein (clathrin heavy 99.8 3.1E-17 1.1E-21 169.3 21.0 282 116-448 15-304 (449)
27 4g1t_A Interferon-induced prot 99.8 2.3E-15 7.8E-20 165.0 36.9 387 319-739 49-463 (472)
28 1b89_A Protein (clathrin heavy 99.7 2E-16 7E-21 163.2 25.0 379 298-731 15-413 (449)
29 3spa_A Mtrpol, DNA-directed RN 99.7 3.7E-18 1.3E-22 189.4 12.7 136 530-669 126-265 (1134)
30 4eqf_A PEX5-related protein; a 99.7 3.4E-16 1.2E-20 165.2 24.8 271 324-626 68-352 (365)
31 4eqf_A PEX5-related protein; a 99.7 5.5E-16 1.9E-20 163.6 26.2 276 285-591 64-352 (365)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-17 3.8E-22 185.7 10.6 151 460-615 126-286 (1134)
33 3cv0_A Peroxisome targeting si 99.7 2.6E-15 8.9E-20 155.4 27.1 275 323-627 23-312 (327)
34 3cv0_A Peroxisome targeting si 99.7 2E-15 6.8E-20 156.3 26.0 281 285-593 20-313 (327)
35 3mkr_A Coatomer subunit epsilo 99.7 8.6E-15 2.9E-19 148.2 27.1 250 331-594 9-263 (291)
36 3mkr_A Coatomer subunit epsilo 99.7 1.7E-14 5.7E-19 146.1 28.1 225 326-566 39-268 (291)
37 3e4b_A ALGK; tetratricopeptide 99.6 9.8E-13 3.4E-17 142.2 29.8 318 109-456 8-352 (452)
38 3uq3_A Heat shock protein STI1 99.6 5.9E-13 2E-17 132.3 25.8 118 509-629 118-235 (258)
39 2pl2_A Hypothetical conserved 99.6 2.1E-13 7.1E-18 131.7 21.5 199 101-312 2-211 (217)
40 3e4b_A ALGK; tetratricopeptide 99.6 5.3E-13 1.8E-17 144.4 26.5 346 257-631 9-388 (452)
41 3uq3_A Heat shock protein STI1 99.6 8.3E-13 2.8E-17 131.2 25.9 222 324-594 8-235 (258)
42 2h6f_A Protein farnesyltransfe 99.6 1.5E-12 5.2E-17 136.2 27.8 249 103-366 96-363 (382)
43 2pl2_A Hypothetical conserved 99.5 6.3E-13 2.2E-17 128.3 22.1 196 425-627 4-211 (217)
44 4e6h_A MRNA 3'-END-processing 99.5 2.1E-10 7.1E-15 128.1 43.4 459 120-611 48-584 (679)
45 1xnf_A Lipoprotein NLPI; TPR, 99.5 2E-12 6.7E-17 130.0 23.7 228 472-708 16-252 (275)
46 3u4t_A TPR repeat-containing p 99.5 3.4E-12 1.2E-16 128.0 24.8 235 105-350 4-250 (272)
47 2h6f_A Protein farnesyltransfe 99.5 9.6E-12 3.3E-16 130.2 28.1 233 139-385 97-348 (382)
48 4e6h_A MRNA 3'-END-processing 99.5 5.5E-10 1.9E-14 124.8 43.8 457 154-646 47-584 (679)
49 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.1E-12 3.7E-17 131.9 20.1 222 116-350 17-244 (275)
50 3u4t_A TPR repeat-containing p 99.5 6.8E-12 2.3E-16 125.8 25.9 230 326-559 8-249 (272)
51 2ho1_A Type 4 fimbrial biogene 99.5 9.9E-12 3.4E-16 123.1 26.7 165 462-629 72-237 (252)
52 1ouv_A Conserved hypothetical 99.5 5.6E-11 1.9E-15 119.3 32.6 219 393-629 8-250 (273)
53 1ouv_A Conserved hypothetical 99.5 4.1E-11 1.4E-15 120.3 31.3 224 102-350 4-251 (273)
54 2ho1_A Type 4 fimbrial biogene 99.5 1.4E-11 4.7E-16 122.0 27.2 200 391-594 37-237 (252)
55 2vq2_A PILW, putative fimbrial 99.5 1.8E-11 6E-16 118.6 26.7 200 426-629 8-210 (225)
56 2vq2_A PILW, putative fimbrial 99.5 1.7E-11 5.8E-16 118.7 26.6 198 394-594 11-210 (225)
57 2q7f_A YRRB protein; TPR, prot 99.4 7.4E-12 2.5E-16 123.1 21.6 198 357-559 24-221 (243)
58 2q7f_A YRRB protein; TPR, prot 99.4 7.3E-12 2.5E-16 123.1 21.2 197 428-629 25-221 (243)
59 4a1s_A PINS, partner of inscut 99.4 2.2E-12 7.4E-17 138.3 18.1 207 105-314 49-291 (411)
60 3sf4_A G-protein-signaling mod 99.4 5.8E-12 2E-16 134.5 20.3 171 210-382 88-293 (406)
61 3sf4_A G-protein-signaling mod 99.4 5.8E-12 2E-16 134.5 19.5 279 102-384 7-335 (406)
62 3ro2_A PINS homolog, G-protein 99.4 7E-12 2.4E-16 129.8 18.4 241 105-348 6-290 (338)
63 4a1s_A PINS, partner of inscut 99.4 1.7E-11 5.6E-16 131.4 20.7 206 141-349 50-291 (411)
64 3ro2_A PINS homolog, G-protein 99.4 9.7E-12 3.3E-16 128.7 17.0 283 140-455 6-332 (338)
65 2ond_A Cleavage stimulation fa 99.3 6.9E-10 2.4E-14 113.4 28.8 182 443-629 81-269 (308)
66 3vtx_A MAMA; tetratricopeptide 99.3 1.5E-10 5.2E-15 108.2 22.0 164 427-594 6-169 (184)
67 2ond_A Cleavage stimulation fa 99.3 7.8E-10 2.7E-14 113.0 28.3 216 121-349 33-269 (308)
68 3vtx_A MAMA; tetratricopeptide 99.3 2E-10 6.8E-15 107.4 21.7 168 102-280 3-170 (184)
69 3nf1_A KLC 1, kinesin light ch 99.3 6.3E-12 2.2E-16 128.7 12.0 185 102-314 25-223 (311)
70 3nf1_A KLC 1, kinesin light ch 99.3 8.3E-12 2.8E-16 127.8 12.4 144 101-279 66-223 (311)
71 3ulq_A Response regulator aspa 99.3 1.9E-10 6.4E-15 121.9 23.0 230 397-629 109-367 (383)
72 4abn_A Tetratricopeptide repea 99.3 2.9E-10 1E-14 123.6 25.0 210 512-731 84-317 (474)
73 3ulq_A Response regulator aspa 99.3 2.8E-10 9.6E-15 120.5 24.1 300 261-594 22-367 (383)
74 4abn_A Tetratricopeptide repea 99.3 1.2E-10 4E-15 126.7 19.8 192 425-624 101-315 (474)
75 1hz4_A MALT regulatory protein 99.2 2.9E-09 1E-13 112.1 27.8 231 150-383 25-280 (373)
76 1hz4_A MALT regulatory protein 99.2 3.4E-09 1.2E-13 111.6 27.0 276 106-384 16-321 (373)
77 4i17_A Hypothetical protein; T 99.2 4.4E-09 1.5E-13 102.0 25.7 206 495-714 6-223 (228)
78 3q15_A PSP28, response regulat 99.2 2.5E-09 8.4E-14 112.9 25.6 312 248-594 7-364 (378)
79 3q15_A PSP28, response regulat 99.2 1.4E-09 4.7E-14 114.9 23.5 228 398-629 108-364 (378)
80 4gyw_A UDP-N-acetylglucosamine 99.2 1.2E-09 4E-14 123.7 20.6 169 100-279 5-173 (723)
81 3edt_B KLC 2, kinesin light ch 99.1 3.5E-10 1.2E-14 113.7 14.6 165 220-384 12-197 (283)
82 3as5_A MAMA; tetratricopeptide 99.1 2.6E-09 9E-14 99.4 19.6 165 105-280 9-173 (186)
83 3as5_A MAMA; tetratricopeptide 99.1 4.2E-09 1.4E-13 98.0 20.5 163 463-629 10-172 (186)
84 3edt_B KLC 2, kinesin light ch 99.1 6E-10 2E-14 112.0 13.9 164 117-280 14-198 (283)
85 4i17_A Hypothetical protein; T 99.1 1.3E-08 4.5E-13 98.6 22.1 199 460-672 6-215 (228)
86 4gyw_A UDP-N-acetylglucosamine 99.1 7.9E-09 2.7E-13 116.9 21.6 162 322-487 10-171 (723)
87 1qqe_A Vesicular transport pro 99.0 1.9E-08 6.5E-13 101.7 19.7 204 540-743 46-277 (292)
88 3mv2_B Coatomer subunit epsilo 99.0 2.1E-07 7.3E-12 92.1 26.0 178 445-629 85-281 (310)
89 2uy1_A Cleavage stimulation fa 99.0 1.2E-06 4E-11 95.0 34.1 388 152-629 7-412 (493)
90 3mv2_B Coatomer subunit epsilo 99.0 2.3E-07 7.9E-12 91.8 25.2 186 515-708 85-290 (310)
91 1qqe_A Vesicular transport pro 99.0 4.1E-08 1.4E-12 99.2 20.5 199 148-349 46-268 (292)
92 3urz_A Uncharacterized protein 98.9 5.9E-08 2E-12 92.5 17.0 176 106-293 6-197 (208)
93 2fo7_A Synthetic consensus TPR 98.9 1.1E-07 3.8E-12 82.8 17.4 128 499-629 4-131 (136)
94 2uy1_A Cleavage stimulation fa 98.9 3.5E-06 1.2E-10 91.3 32.6 355 265-662 28-411 (493)
95 2fo7_A Synthetic consensus TPR 98.8 1E-07 3.4E-12 83.1 16.5 129 106-244 3-131 (136)
96 3dra_A Protein farnesyltransfe 98.8 2E-06 6.9E-11 86.1 27.8 221 117-349 46-286 (306)
97 3qky_A Outer membrane assembly 98.8 1.2E-07 4E-12 94.1 18.0 62 392-454 16-80 (261)
98 3qky_A Outer membrane assembly 98.8 1.2E-07 4.2E-12 93.9 17.9 171 101-280 12-224 (261)
99 3urz_A Uncharacterized protein 98.8 1.8E-07 6E-12 89.1 17.8 135 502-643 60-197 (208)
100 3dra_A Protein farnesyltransfe 98.8 3.1E-06 1.1E-10 84.7 27.0 223 149-383 42-285 (306)
101 2pzi_A Probable serine/threoni 98.8 9.9E-08 3.4E-12 108.5 17.7 174 115-301 402-583 (681)
102 2pzi_A Probable serine/threoni 98.8 1E-07 3.5E-12 108.5 17.5 167 507-682 402-580 (681)
103 2r5s_A Uncharacterized protein 98.8 5.8E-08 2E-12 89.7 12.6 161 107-313 9-171 (176)
104 4ga2_A E3 SUMO-protein ligase 98.7 5.2E-08 1.8E-12 87.2 11.0 143 113-265 6-148 (150)
105 3qou_A Protein YBBN; thioredox 98.7 3.9E-07 1.3E-11 91.6 18.6 167 137-314 115-283 (287)
106 3rjv_A Putative SEL1 repeat pr 98.7 1.5E-06 5.1E-11 82.9 21.2 16 509-524 142-157 (212)
107 3rjv_A Putative SEL1 repeat pr 98.7 1.1E-06 3.7E-11 83.8 20.2 175 410-596 5-198 (212)
108 2r5s_A Uncharacterized protein 98.7 2.3E-07 7.8E-12 85.6 13.8 163 142-349 9-172 (176)
109 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.5E-06 5E-11 83.9 20.0 189 104-318 4-216 (225)
110 2ifu_A Gamma-SNAP; membrane fu 98.7 2.3E-07 8E-12 94.4 14.5 167 117-313 4-182 (307)
111 3qou_A Protein YBBN; thioredox 98.7 6.1E-07 2.1E-11 90.2 17.4 168 101-278 114-282 (287)
112 4ga2_A E3 SUMO-protein ligase 98.6 4.3E-07 1.5E-11 81.2 13.6 133 89-224 16-149 (150)
113 2yhc_A BAMD, UPF0169 lipoprote 98.6 3E-06 1E-10 81.6 20.1 189 250-457 3-215 (225)
114 2vsy_A XCC0866; transferase, g 98.6 6.9E-07 2.3E-11 99.7 17.5 154 117-281 2-158 (568)
115 2c2l_A CHIP, carboxy terminus 98.6 4.3E-06 1.5E-10 83.6 21.4 190 530-734 3-198 (281)
116 2ifu_A Gamma-SNAP; membrane fu 98.6 6.6E-07 2.3E-11 91.0 15.3 203 152-383 4-222 (307)
117 2vsy_A XCC0866; transferase, g 98.6 1.2E-06 4E-11 97.9 18.7 152 370-525 3-157 (568)
118 4gco_A Protein STI-1; structur 98.6 8.2E-07 2.8E-11 76.5 13.3 111 103-216 12-122 (126)
119 2c2l_A CHIP, carboxy terminus 98.6 3E-07 1E-11 92.1 11.8 194 102-314 2-198 (281)
120 3q7a_A Farnesyltransferase alp 98.5 4.9E-05 1.7E-09 76.8 27.0 191 106-301 56-257 (349)
121 1na0_A Designed protein CTPR3; 98.5 3.3E-06 1.1E-10 72.0 15.8 115 104-221 9-123 (125)
122 3gyz_A Chaperone protein IPGC; 98.5 7.7E-07 2.6E-11 79.2 11.8 108 99-210 31-138 (151)
123 3q7a_A Farnesyltransferase alp 98.5 5.8E-05 2E-09 76.3 26.5 171 153-335 68-256 (349)
124 1a17_A Serine/threonine protei 98.5 2.4E-06 8.3E-11 77.4 15.3 134 104-240 13-148 (166)
125 4gco_A Protein STI-1; structur 98.5 1.6E-06 5.6E-11 74.6 13.1 113 597-714 8-124 (126)
126 2vyi_A SGTA protein; chaperone 98.5 2.7E-06 9.4E-11 73.3 14.5 120 103-225 11-130 (131)
127 2lni_A Stress-induced-phosphop 98.5 3.1E-06 1.1E-10 73.3 14.8 120 101-223 13-132 (133)
128 3u3w_A Transcriptional activat 98.5 1.5E-05 5.2E-10 80.2 21.8 163 256-418 80-264 (293)
129 2qfc_A PLCR protein; TPR, HTH, 98.5 2E-05 6.9E-10 79.3 22.4 165 463-628 77-264 (293)
130 3u3w_A Transcriptional activat 98.4 3E-05 1E-09 78.0 23.2 127 502-628 121-264 (293)
131 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.1E-05 3.9E-10 76.6 18.6 126 499-629 9-149 (213)
132 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.3E-05 4.3E-10 76.3 18.7 129 105-246 7-151 (213)
133 2qfc_A PLCR protein; TPR, HTH, 98.4 2.7E-05 9.1E-10 78.4 21.8 166 533-699 77-266 (293)
134 3dss_A Geranylgeranyl transfer 98.4 0.00023 7.7E-09 71.6 27.5 98 512-612 90-190 (331)
135 3gw4_A Uncharacterized protein 98.4 2E-06 7E-11 81.0 11.5 161 115-279 3-175 (203)
136 1a17_A Serine/threonine protei 98.4 1.5E-05 5.1E-10 72.1 16.6 92 501-594 18-109 (166)
137 4f3v_A ESX-1 secretion system 98.4 1E-05 3.5E-10 79.0 16.1 196 508-713 18-249 (282)
138 2vgx_A Chaperone SYCD; alterna 98.3 5.2E-06 1.8E-10 73.8 12.9 102 100-203 17-118 (148)
139 3gyz_A Chaperone protein IPGC; 98.3 1.2E-05 4.2E-10 71.3 15.2 95 532-629 37-132 (151)
140 1na0_A Designed protein CTPR3; 98.3 2.2E-05 7.6E-10 66.7 15.9 92 500-593 13-104 (125)
141 1p5q_A FKBP52, FK506-binding p 98.3 7E-06 2.4E-10 84.4 14.5 125 103-229 146-284 (336)
142 3dss_A Geranylgeranyl transfer 98.3 0.00022 7.6E-09 71.6 24.8 95 443-540 91-188 (331)
143 2e2e_A Formate-dependent nitri 98.3 7.7E-06 2.6E-10 75.2 13.3 119 508-630 22-144 (177)
144 2xcb_A PCRH, regulatory protei 98.3 6.2E-06 2.1E-10 72.7 12.0 101 101-203 15-115 (142)
145 3upv_A Heat shock protein STI1 98.3 1.7E-05 5.7E-10 68.1 14.3 98 104-203 4-101 (126)
146 1elw_A TPR1-domain of HOP; HOP 98.3 2.6E-05 8.8E-10 65.5 15.2 109 104-215 4-112 (118)
147 3gw4_A Uncharacterized protein 98.3 1E-05 3.5E-10 76.1 13.9 156 473-629 4-175 (203)
148 4f3v_A ESX-1 secretion system 98.3 5.8E-06 2E-10 80.7 12.0 51 116-167 18-75 (282)
149 2vyi_A SGTA protein; chaperone 98.2 2.4E-05 8.3E-10 67.1 14.6 115 498-616 14-129 (131)
150 2e2e_A Formate-dependent nitri 98.2 1.1E-05 3.8E-10 74.1 12.9 117 440-559 24-143 (177)
151 4gcn_A Protein STI-1; structur 98.2 1.8E-05 6.3E-10 68.0 13.1 107 105-214 9-121 (127)
152 2vgx_A Chaperone SYCD; alterna 98.2 3.1E-06 1.1E-10 75.2 8.3 110 125-244 8-117 (148)
153 2kck_A TPR repeat; tetratricop 98.2 1.1E-05 3.8E-10 67.1 11.3 102 101-204 3-107 (112)
154 2lni_A Stress-induced-phosphop 98.2 2.8E-05 9.7E-10 67.0 14.3 116 461-580 16-132 (133)
155 1p5q_A FKBP52, FK506-binding p 98.2 2.7E-05 9.4E-10 79.9 15.8 128 498-628 149-292 (336)
156 3sz7_A HSC70 cochaperone (SGT) 98.1 2.5E-05 8.6E-10 70.7 13.3 101 102-204 9-109 (164)
157 1elr_A TPR2A-domain of HOP; HO 98.1 1.5E-05 5.2E-10 68.5 11.2 113 104-219 4-122 (131)
158 3q49_B STIP1 homology and U bo 98.1 3.9E-05 1.3E-09 66.7 14.0 101 101-203 6-106 (137)
159 4gcn_A Protein STI-1; structur 98.1 2.9E-05 9.8E-10 66.8 12.7 95 534-629 11-111 (127)
160 2fbn_A 70 kDa peptidylprolyl i 98.1 4.7E-05 1.6E-09 71.4 14.5 122 105-228 39-175 (198)
161 2dba_A Smooth muscle cell asso 98.1 6.6E-05 2.3E-09 66.1 14.7 111 101-215 25-139 (148)
162 1hxi_A PEX5, peroxisome target 98.1 2.6E-05 8.7E-10 66.4 11.3 95 107-203 20-114 (121)
163 3upv_A Heat shock protein STI1 98.1 7.5E-05 2.6E-09 63.9 14.2 94 533-629 6-100 (126)
164 2fbn_A 70 kDa peptidylprolyl i 98.0 5.6E-06 1.9E-10 77.8 7.0 149 113-271 13-176 (198)
165 1elw_A TPR1-domain of HOP; HOP 98.0 0.00016 5.6E-09 60.4 15.6 94 534-629 7-100 (118)
166 3q49_B STIP1 homology and U bo 98.0 0.00017 6E-09 62.5 15.3 98 136-235 6-103 (137)
167 1elr_A TPR2A-domain of HOP; HO 98.0 5.6E-05 1.9E-09 64.8 11.8 95 534-629 7-107 (131)
168 2dba_A Smooth muscle cell asso 98.0 0.00023 7.7E-09 62.6 15.7 110 600-714 27-142 (148)
169 2xcb_A PCRH, regulatory protei 98.0 6.6E-05 2.2E-09 66.0 12.0 93 534-629 21-114 (142)
170 4b4t_Q 26S proteasome regulato 98.0 0.0037 1.3E-07 66.5 28.3 121 508-628 107-243 (434)
171 2hr2_A Hypothetical protein; a 97.9 3.6E-05 1.2E-09 67.6 9.5 48 666-714 93-145 (159)
172 2xev_A YBGF; tetratricopeptide 97.9 0.00024 8.1E-09 60.8 14.8 97 107-204 5-106 (129)
173 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 8.4E-05 2.9E-09 79.9 13.9 124 104-229 268-405 (457)
174 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00018 6.3E-09 64.8 14.1 93 533-628 13-106 (164)
175 2kck_A TPR repeat; tetratricop 97.9 8.6E-05 2.9E-09 61.5 11.1 101 137-246 4-107 (112)
176 4b4t_Q 26S proteasome regulato 97.9 0.002 6.8E-08 68.6 24.4 166 429-594 58-244 (434)
177 3rkv_A Putative peptidylprolyl 97.9 4.7E-05 1.6E-09 68.7 9.7 99 105-204 12-127 (162)
178 2if4_A ATFKBP42; FKBP-like, al 97.9 2.5E-05 8.6E-10 80.3 8.2 151 566-738 179-331 (338)
179 1wao_1 Serine/threonine protei 97.8 4.2E-05 1.4E-09 82.6 10.2 120 108-230 10-131 (477)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00018 6.3E-09 77.2 15.0 79 638-719 319-399 (457)
181 3rkv_A Putative peptidylprolyl 97.8 6.1E-05 2.1E-09 67.9 9.6 109 603-714 13-141 (162)
182 3k9i_A BH0479 protein; putativ 97.8 3.6E-05 1.2E-09 65.0 7.5 87 116-203 2-90 (117)
183 1hxi_A PEX5, peroxisome target 97.8 0.00015 5.2E-09 61.5 11.4 91 536-629 22-113 (121)
184 3ro3_A PINS homolog, G-protein 97.8 0.0001 3.5E-09 65.9 10.6 131 499-629 12-157 (164)
185 3ro3_A PINS homolog, G-protein 97.8 5.9E-05 2E-09 67.5 8.7 141 105-279 10-157 (164)
186 1dce_A Protein (RAB geranylger 97.8 0.0011 3.7E-08 72.9 19.8 165 546-718 44-239 (567)
187 2hr2_A Hypothetical protein; a 97.7 0.00034 1.1E-08 61.5 12.0 98 105-203 12-131 (159)
188 1ihg_A Cyclophilin 40; ppiase 97.7 0.00012 4E-09 76.2 10.6 121 105-228 224-360 (370)
189 2xev_A YBGF; tetratricopeptide 97.7 0.0009 3.1E-08 57.1 14.2 100 607-709 8-114 (129)
190 1ihg_A Cyclophilin 40; ppiase 97.7 0.00024 8.2E-09 73.8 12.2 77 638-717 275-353 (370)
191 3n71_A Histone lysine methyltr 97.6 0.00013 4.3E-09 78.4 9.8 133 148-280 318-464 (490)
192 1wao_1 Serine/threonine protei 97.6 0.0004 1.4E-08 75.0 13.8 117 331-450 16-134 (477)
193 1zu2_A Mitochondrial import re 97.6 8.6E-05 2.9E-09 65.1 6.8 88 649-739 16-124 (158)
194 3k9i_A BH0479 protein; putativ 97.6 0.00011 3.9E-09 61.8 6.6 84 544-629 3-89 (117)
195 1dce_A Protein (RAB geranylger 97.5 0.003 1E-07 69.4 19.1 170 407-581 45-241 (567)
196 2l6j_A TPR repeat-containing p 97.5 0.00052 1.8E-08 56.7 10.2 87 140-228 5-97 (111)
197 1na3_A Designed protein CTPR2; 97.5 0.00081 2.8E-08 53.1 10.4 81 104-186 9-89 (91)
198 1zu2_A Mitochondrial import re 97.5 0.00026 8.9E-09 62.0 7.8 99 115-217 13-132 (158)
199 2l6j_A TPR repeat-containing p 97.4 0.00062 2.1E-08 56.2 9.5 96 103-199 3-103 (111)
200 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00038 1.3E-08 71.4 9.7 130 104-244 179-327 (338)
201 3n71_A Histone lysine methyltr 97.4 0.00048 1.6E-08 73.9 9.6 131 183-313 318-462 (490)
202 2kat_A Uncharacterized protein 97.4 0.0011 3.6E-08 55.5 10.0 79 122-202 3-81 (115)
203 2kat_A Uncharacterized protein 97.3 0.0013 4.4E-08 54.9 9.8 76 94-170 9-84 (115)
204 1klx_A Cysteine rich protein B 97.3 0.0064 2.2E-07 52.6 14.5 88 362-455 31-126 (138)
205 1klx_A Cysteine rich protein B 97.3 0.0082 2.8E-07 52.0 14.9 108 512-630 11-126 (138)
206 1na3_A Designed protein CTPR2; 97.2 0.0025 8.6E-08 50.1 10.6 83 138-222 8-90 (91)
207 3ma5_A Tetratricopeptide repea 97.2 0.0012 4.2E-08 53.5 8.6 67 101-168 4-70 (100)
208 3ma5_A Tetratricopeptide repea 97.0 0.0032 1.1E-07 50.9 8.8 67 136-203 4-70 (100)
209 2kc7_A BFR218_protein; tetratr 96.5 0.0071 2.4E-07 48.5 7.3 60 110-170 6-66 (99)
210 2kc7_A BFR218_protein; tetratr 96.4 0.015 5.1E-07 46.5 9.0 77 649-737 14-92 (99)
211 3ly7_A Transcriptional activat 96.3 0.037 1.3E-06 55.7 12.8 75 563-641 274-348 (372)
212 3qww_A SET and MYND domain-con 96.3 0.01 3.4E-07 62.5 9.0 94 186-279 310-410 (433)
213 3bee_A Putative YFRE protein; 96.3 0.03 1E-06 44.3 9.7 69 101-170 3-74 (93)
214 4ady_A RPN2, 26S proteasome re 96.2 2.6 8.8E-05 48.0 37.5 264 330-603 383-663 (963)
215 3qwp_A SET and MYND domain-con 96.1 0.016 5.6E-07 60.9 9.7 99 181-279 294-399 (429)
216 3qwp_A SET and MYND domain-con 96.1 0.02 6.9E-07 60.2 10.3 100 145-244 293-406 (429)
217 3u64_A Protein TP_0956; tetrat 96.1 0.01 3.5E-07 57.2 7.1 87 650-738 178-272 (301)
218 3ly7_A Transcriptional activat 96.0 0.1 3.5E-06 52.5 14.1 71 530-604 276-346 (372)
219 3mkq_A Coatomer beta'-subunit; 96.0 0.3 1E-05 56.4 20.6 129 465-626 633-761 (814)
220 3qww_A SET and MYND domain-con 95.8 0.0073 2.5E-07 63.5 5.1 92 222-313 311-409 (433)
221 1pc2_A Mitochondria fission pr 95.8 0.099 3.4E-06 45.1 11.2 89 617-708 14-108 (152)
222 3mkq_A Coatomer beta'-subunit; 95.7 0.53 1.8E-05 54.3 21.3 103 395-524 633-735 (814)
223 3bee_A Putative YFRE protein; 95.6 0.13 4.5E-06 40.5 10.6 68 136-204 3-73 (93)
224 1pc2_A Mitochondria fission pr 95.5 0.093 3.2E-06 45.3 10.0 87 120-209 14-104 (152)
225 3u64_A Protein TP_0956; tetrat 95.3 0.1 3.5E-06 50.3 10.7 92 547-642 179-283 (301)
226 2v5f_A Prolyl 4-hydroxylase su 94.8 0.22 7.6E-06 40.1 10.2 66 138-203 4-75 (104)
227 1wy6_A Hypothetical protein ST 94.8 1.5 5.1E-05 36.4 14.3 139 402-562 18-156 (172)
228 3lvg_A Clathrin heavy chain 1; 94.6 7.9E-05 2.7E-09 76.1 -13.5 223 104-369 54-276 (624)
229 2v5f_A Prolyl 4-hydroxylase su 94.5 0.29 9.8E-06 39.5 10.1 68 103-170 4-77 (104)
230 3mkq_B Coatomer subunit alpha; 94.2 1.1 3.7E-05 39.7 13.5 98 333-451 17-114 (177)
231 3mkq_B Coatomer subunit alpha; 93.9 1.8 6E-05 38.4 14.3 100 506-626 15-114 (177)
232 1nzn_A CGI-135 protein, fissio 93.4 0.68 2.3E-05 38.3 10.0 84 120-204 17-104 (126)
233 1wy6_A Hypothetical protein ST 93.2 3.1 0.00011 34.6 15.0 137 264-422 20-156 (172)
234 1nzn_A CGI-135 protein, fissio 93.1 0.54 1.9E-05 38.9 9.1 90 616-708 16-111 (126)
235 3lvg_A Clathrin heavy chain 1; 92.9 0.00019 6.4E-09 73.4 -14.4 214 208-450 53-286 (624)
236 4h7y_A Dual specificity protei 92.8 1.3 4.3E-05 37.8 10.8 114 101-217 10-136 (161)
237 3o48_A Mitochondria fission 1 92.1 3.1 0.0001 34.6 12.2 57 649-708 57-115 (134)
238 4h7y_A Dual specificity protei 91.9 1.6 5.3E-05 37.2 10.3 103 249-353 11-126 (161)
239 4ady_A RPN2, 26S proteasome re 91.2 25 0.00084 40.2 37.0 348 255-618 343-723 (963)
240 1y8m_A FIS1; mitochondria, unk 90.4 7.3 0.00025 32.8 13.5 58 649-707 56-113 (144)
241 4b4t_P 26S proteasome regulato 89.7 18 0.00063 37.7 19.0 163 535-697 141-322 (445)
242 2wpv_A GET4, UPF0363 protein Y 88.7 19 0.00065 35.2 20.1 81 250-349 133-216 (312)
243 4gns_B Protein CSD3, chitin bi 87.5 5.6 0.00019 44.4 13.6 44 672-717 615-658 (754)
244 2ff4_A Probable regulatory pro 84.8 3.4 0.00012 42.5 9.7 71 142-213 174-249 (388)
245 3o48_A Mitochondria fission 1 83.6 8.8 0.0003 31.9 9.6 69 564-636 38-111 (134)
246 4gns_B Protein CSD3, chitin bi 83.1 12 0.0004 41.8 13.5 54 399-453 345-398 (754)
247 2ff4_A Probable regulatory pro 83.0 4.2 0.00014 41.8 9.5 133 102-253 110-249 (388)
248 4b4t_P 26S proteasome regulato 81.5 54 0.0019 34.1 21.0 95 500-594 141-246 (445)
249 2wpv_A GET4, UPF0363 protein Y 79.7 48 0.0016 32.4 19.8 26 425-450 133-158 (312)
250 1v54_E Cytochrome C oxidase po 78.7 20 0.00069 28.0 9.3 50 476-525 25-74 (109)
251 3lpz_A GET4 (YOR164C homolog); 77.0 60 0.002 32.0 22.3 81 250-349 135-215 (336)
252 4fhn_B Nucleoporin NUP120; pro 75.7 43 0.0015 39.9 16.3 170 430-621 816-991 (1139)
253 1v54_E Cytochrome C oxidase po 74.9 18 0.00062 28.3 8.1 47 374-420 28-74 (109)
254 1zbp_A Hypothetical protein VP 74.5 13 0.00044 35.3 8.9 116 147-280 5-129 (273)
255 2p58_C Putative type III secre 74.4 20 0.00068 27.9 8.1 84 119-211 22-105 (116)
256 1zbp_A Hypothetical protein VP 74.1 29 0.001 32.9 11.2 116 575-702 6-132 (273)
257 4fhn_B Nucleoporin NUP120; pro 73.0 51 0.0017 39.3 16.0 170 326-517 817-992 (1139)
258 1y8m_A FIS1; mitochondria, unk 72.9 42 0.0014 28.3 13.7 69 136-204 36-107 (144)
259 3ffl_A Anaphase-promoting comp 72.6 8 0.00027 33.6 6.4 69 134-202 13-91 (167)
260 2uwj_G Type III export protein 71.4 19 0.00064 28.0 7.3 85 119-212 21-105 (115)
261 3lpz_A GET4 (YOR164C homolog); 71.0 84 0.0029 31.0 23.3 25 530-554 135-159 (336)
262 2y69_E Cytochrome C oxidase su 70.4 36 0.0012 28.2 9.3 62 476-538 68-129 (152)
263 1wdy_A 2-5A-dependent ribonucl 68.6 15 0.00052 35.1 8.7 12 238-249 87-98 (285)
264 4b4t_R RPN7, 26S proteasome re 68.1 52 0.0018 34.0 13.0 98 532-629 132-236 (429)
265 2qx5_A Nucleoporin NIC96; mRNA 67.1 1.5E+02 0.0052 32.4 17.3 81 257-348 300-383 (661)
266 4b4t_R RPN7, 26S proteasome re 67.1 35 0.0012 35.4 11.5 97 498-594 133-236 (429)
267 3ffl_A Anaphase-promoting comp 65.4 40 0.0014 29.3 9.2 114 501-627 25-148 (167)
268 2p58_C Putative type III secre 64.9 40 0.0014 26.2 8.0 48 541-594 50-97 (116)
269 2y69_E Cytochrome C oxidase su 63.7 37 0.0013 28.2 8.1 46 375-420 72-117 (152)
270 1n11_A Ankyrin; clathrin, BAND 61.9 46 0.0016 34.4 11.4 38 237-274 28-67 (437)
271 1k1a_A B-cell lymphoma 3-encod 59.4 36 0.0012 31.4 9.2 25 182-206 14-38 (241)
272 2uwj_G Type III export protein 59.4 38 0.0013 26.3 7.0 48 541-594 49-96 (115)
273 2cos_A Serine/threonine protei 57.8 8.8 0.0003 25.7 2.9 37 656-697 11-49 (54)
274 3esl_A Checkpoint serine/threo 56.3 75 0.0026 28.6 9.7 57 579-635 92-149 (202)
275 3kea_A K1L; tropism, ANK repea 52.1 53 0.0018 31.5 9.2 19 328-346 165-183 (285)
276 3eiq_C Programmed cell death p 51.8 1.7E+02 0.0058 29.2 12.6 27 253-279 56-82 (358)
277 3mv2_A Coatomer subunit alpha; 51.3 46 0.0016 32.4 8.0 52 651-702 186-239 (325)
278 3esl_A Checkpoint serine/threo 50.9 1.1E+02 0.0038 27.5 9.9 56 509-564 92-148 (202)
279 3eu9_A Huntingtin-interacting 48.5 32 0.0011 31.6 6.8 10 240-249 93-102 (240)
280 4b4t_S RPN3, 26S proteasome re 48.3 68 0.0023 33.8 9.4 26 105-130 232-257 (523)
281 1qsa_A Protein (soluble lytic 47.8 3E+02 0.01 29.8 35.7 246 265-533 228-487 (618)
282 1wdy_A 2-5A-dependent ribonucl 46.4 46 0.0016 31.5 7.7 11 328-338 9-19 (285)
283 3txn_A 26S proteasome regulato 46.3 2.5E+02 0.0085 28.4 24.4 93 536-628 104-208 (394)
284 4a1g_A Mitotic checkpoint seri 42.8 1.5E+02 0.0051 25.2 9.1 83 547-634 51-134 (152)
285 3jxi_A Vanilloid receptor-rela 41.9 25 0.00087 33.1 4.9 94 148-252 11-122 (260)
286 3eiq_C Programmed cell death p 40.4 83 0.0028 31.4 8.3 61 500-561 221-283 (358)
287 3eu9_A Huntingtin-interacting 40.3 40 0.0014 30.9 6.0 16 145-160 45-60 (240)
288 2wvi_A Mitotic checkpoint seri 39.9 1.5E+02 0.0052 25.6 8.8 54 583-636 77-131 (164)
289 3ltm_A Alpha-REP4; protein eng 39.1 2.1E+02 0.0071 25.4 18.8 17 530-546 125-141 (211)
290 3jxi_A Vanilloid receptor-rela 38.9 21 0.00073 33.7 3.8 56 258-313 9-73 (260)
291 4g8k_A 2-5A-dependent ribonucl 38.7 1.7E+02 0.0057 28.6 10.7 57 213-285 26-86 (337)
292 2nsz_A Programmed cell death p 37.4 1.2E+02 0.0041 25.0 7.6 63 325-388 11-75 (129)
293 3txn_A 26S proteasome regulato 37.2 3.4E+02 0.012 27.4 27.2 58 361-418 104-166 (394)
294 3ltm_A Alpha-REP4; protein eng 37.1 2.2E+02 0.0076 25.2 16.8 91 460-559 94-184 (211)
295 3kea_A K1L; tropism, ANK repea 36.7 1.3E+02 0.0043 28.8 9.1 48 258-309 35-82 (285)
296 3ltj_A Alpharep-4; protein eng 36.1 2.2E+02 0.0076 25.0 17.5 9 536-544 157-165 (201)
297 3ltj_A Alpharep-4; protein eng 35.5 2.3E+02 0.0078 24.9 19.4 80 494-581 88-167 (201)
298 2wvi_A Mitotic checkpoint seri 35.4 1.1E+02 0.0036 26.6 7.1 50 236-285 80-130 (164)
299 3mkr_B Coatomer subunit alpha; 35.4 3.2E+02 0.011 26.5 11.6 51 652-702 178-230 (320)
300 2qx5_A Nucleoporin NIC96; mRNA 35.3 4.8E+02 0.016 28.5 19.2 80 431-522 299-382 (661)
301 1n11_A Ankyrin; clathrin, BAND 34.1 1E+02 0.0035 31.6 8.5 20 542-565 352-371 (437)
302 1k1a_A B-cell lymphoma 3-encod 32.6 1.3E+02 0.0045 27.3 8.3 85 258-346 13-101 (241)
303 4g8k_A 2-5A-dependent ribonucl 32.3 3.5E+02 0.012 26.1 12.8 18 145-162 28-45 (337)
304 2r9g_A AAA ATPase, central reg 30.9 2.9E+02 0.0099 24.7 10.0 37 543-580 26-62 (204)
305 2zu6_B Programmed cell death p 30.3 1.6E+02 0.0054 28.6 8.3 225 325-559 7-269 (307)
306 2ion_A PDCD4, programmed cell 30.0 1.1E+02 0.0037 26.2 6.3 63 325-388 13-77 (152)
307 3b7b_A Euchromatic histone-lys 29.8 86 0.0029 28.6 6.4 19 471-489 217-235 (237)
308 3aji_A 26S proteasome non-ATPa 29.7 1.1E+02 0.0038 27.7 7.2 14 150-163 14-27 (231)
309 3ubw_A 14-3-3E, 14-3-3 protein 28.7 3.7E+02 0.013 25.2 11.1 38 574-611 39-76 (261)
310 2d2s_A Exocyst complex compone 28.5 2.6E+02 0.0088 25.9 9.1 23 257-279 24-46 (235)
311 2d2s_A Exocyst complex compone 27.7 2.7E+02 0.0091 25.7 9.1 88 468-558 25-118 (235)
312 4ae4_A Ubiquitin-associated pr 27.0 2.5E+02 0.0085 22.7 9.3 34 656-694 78-112 (118)
313 2f6m_A Suppressor protein STP2 26.8 74 0.0025 22.5 3.7 48 106-154 4-51 (65)
314 3bge_A Predicted ATPase; struc 26.7 3.1E+02 0.01 24.5 8.5 38 543-580 19-56 (201)
315 3b7b_A Euchromatic histone-lys 25.8 91 0.0031 28.5 5.8 17 437-453 218-234 (237)
316 2ekk_A UBA domain from E3 ubiq 25.1 54 0.0018 21.3 2.7 30 659-693 14-43 (47)
317 3pvs_A Replication-associated 25.0 5.8E+02 0.02 26.2 12.4 150 478-629 168-358 (447)
318 3ctd_A Putative ATPase, AAA fa 23.6 4.1E+02 0.014 24.0 9.1 92 537-629 38-137 (213)
319 3ljn_A Hypothetical protein; a 23.5 1.2E+02 0.004 30.2 6.5 19 260-278 90-108 (364)
320 4aez_C MAD3, mitotic spindle c 23.2 1.7E+02 0.0056 26.8 6.4 49 236-284 134-183 (223)
321 4fke_A Aminopeptidase N; zinc 23.0 8.9E+02 0.03 27.7 19.7 159 536-701 691-862 (909)
322 2rfa_A Transient receptor pote 22.6 2E+02 0.0067 26.0 7.4 20 367-386 162-181 (232)
323 1bd8_A P19INK4D CDK4/6 inhibit 22.4 76 0.0026 26.6 4.1 16 184-199 9-24 (156)
324 3hra_A Ankyrin repeat family p 22.3 1.3E+02 0.0043 26.5 5.8 12 333-344 14-25 (201)
325 1bpo_A Protein (clathrin); cla 21.9 4.5E+02 0.015 27.1 9.9 102 118-224 343-444 (494)
326 3bu8_A Telomeric repeat-bindin 21.9 4.5E+02 0.015 23.8 9.6 21 259-279 122-142 (235)
327 2fe3_A Peroxide operon regulat 21.7 3.5E+02 0.012 22.5 8.3 61 129-190 12-72 (145)
328 3aji_A 26S proteasome non-ATPa 21.6 2E+02 0.0068 25.9 7.2 19 181-199 10-28 (231)
329 3l6a_A Eukaryotic translation 21.3 4.2E+02 0.014 26.3 9.8 23 326-348 17-39 (364)
330 4aez_C MAD3, mitotic spindle c 21.1 1.4E+02 0.0049 27.3 5.6 52 583-634 131-183 (223)
331 1mzb_A Ferric uptake regulatio 20.6 3.3E+02 0.011 22.3 7.6 60 130-190 9-69 (136)
332 1ug3_A EIF4GI, eukaryotic prot 20.2 3.2E+02 0.011 26.9 8.7 231 325-578 15-256 (339)
333 4ets_A Ferric uptake regulatio 20.2 2.1E+02 0.0073 24.5 6.4 69 121-190 14-85 (162)
334 3t8k_A Uncharacterized protein 20.1 3E+02 0.01 23.9 7.8 29 292-320 41-69 (186)
335 2nsz_A Programmed cell death p 20.0 3.6E+02 0.012 22.0 9.0 23 465-487 11-33 (129)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-41 Score=379.60 Aligned_cols=523 Identities=13% Similarity=0.033 Sum_probs=410.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 039931 149 LLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYA 228 (783)
Q Consensus 149 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 228 (783)
..+.|.+..+...+..+ +.+++..|+.++..|.+.|++++|..+|++|.+. .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 45667777777777665 5578889999999999999999999999999854 57888999999999999999988
Q ss_pred hhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHH
Q 039931 229 LGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRL 308 (783)
Q Consensus 229 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 308 (783)
..+|+.+... .++..+++.++.+|.+.|++++|+++|+++. |+.. ...++.+.++
T Consensus 137 -------~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~------- 191 (597)
T 2xpi_A 137 -------KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM------- 191 (597)
T ss_dssp -------HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------C-------
T ss_pred -------HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----cccccccccc-------
Confidence 5677776432 5788999999999999999999999998532 2210 0111111111
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH--HH-HHHHHhC
Q 039931 309 LRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAF--EA-YKIMHQF 385 (783)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~--~~-~~~m~~~ 385 (783)
...+...+..+|+.++.+|.+.|++++|.++|++|.+.++. +...+..+...+...+..+.+. .+ +..+...
T Consensus 192 ----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (597)
T 2xpi_A 192 ----QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266 (597)
T ss_dssp ----CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred ----cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence 12344567788888999999999999999999999886543 5566666665554433322222 11 4555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 039931 386 GLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFS 465 (783)
Q Consensus 386 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 465 (783)
+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+.++. +..+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 343 (597)
T 2xpi_A 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYP 343 (597)
T ss_dssp GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHH
T ss_pred hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHH
Confidence 55555666777788888999999999999888776 468899999999999999999999999999876544 778899
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 039931 466 AYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQG 545 (783)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 545 (783)
.++.++.+.|++++|.++++++.+.. +.+..+++.++..|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 99999999999999999999998653 557888999999999999999999999999876433 6889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 546 RMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLD 625 (783)
Q Consensus 546 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 625 (783)
++++|.++|+++.+.+ +++..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+
T Consensus 422 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 422 EHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998864 4578899999999999999999999999998743 3478899999999999999999999999
Q ss_pred HHHHC----CCCCC--HHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 039931 626 ELVSA----GIVPN--TVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSE 698 (783)
Q Consensus 626 ~m~~~----g~~p~--~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 698 (783)
++.+. +..|+ ..+|..+...++. |++++|.+.++++++.+ +.+..+|..+...|.+.|++++|.++++++.+
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99864 77888 6789999988886 89999999999998854 23678999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 039931 699 ISFDFDETSYKIMDRAYH 716 (783)
Q Consensus 699 ~~~~~d~~~~~~l~~~y~ 716 (783)
++|+ +..+|..|+++|.
T Consensus 579 ~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 579 ISPN-EIMASDLLKRALE 595 (597)
T ss_dssp HCTT-CHHHHHHHHHTTC
T ss_pred cCCC-ChHHHHHHHHHHh
Confidence 9998 8899999988774
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-40 Score=377.05 Aligned_cols=483 Identities=14% Similarity=0.065 Sum_probs=359.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 039931 138 SESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILIN 217 (783)
Q Consensus 138 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (783)
+...|+.++..+.+.|++++|+.+|++|.... |+..++..++.+|.+.|++++|..+|+++... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 34444445555555555555555554444322 33344444445555555555555554444322 344444555555
Q ss_pred HHHhcCCcchHhhhccchHHHHHH-HH--------------HCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 039931 218 AYCIRGQTSYALGKCGAGRMIFDM-IQ--------------EEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDI 282 (783)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~~~~~-m~--------------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 282 (783)
+|++.|++++| .++|++ ++ ..|..+++.+|+.++.+|.+.|++++|+++|++|.+.++
T Consensus 159 ~~~~~g~~~~A-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 159 CLVKLYDWQGA-------LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHTTCHHHH-------HHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhHHHH-------HHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 55555555444 223331 11 123455789999999999999999999999999998743
Q ss_pred CCCHhHHHHHHHHHHccCChhHHH--HH-HHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 283 APDAVTFNIIVSGHCKYGGMEDGD--RL-LRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAF 359 (783)
Q Consensus 283 ~p~~~t~~~ll~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 359 (783)
. +...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|
T Consensus 232 ~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 308 (597)
T 2xpi_A 232 K-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL 308 (597)
T ss_dssp T-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH
T ss_pred h-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH
Confidence 3 4555666655544433322221 11 444555555556667777888899999999999999998875 4789999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 039931 360 NSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRI 439 (783)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 439 (783)
+.++.+|.+.|++++|+++|+++.+.+. .+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+.
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHh
Confidence 9999999999999999999999987653 377889999999999999999999999998764 44788999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039931 440 GDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLE 519 (783)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 519 (783)
|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|
T Consensus 387 g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998875433 68899999999999999999999999998764 457888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039931 520 REMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT----GLVPD--IVTYNTLIGGYCKALDIVRADELVNKMY 593 (783)
Q Consensus 520 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 593 (783)
+++.+.... ++.+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.
T Consensus 465 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 465 QSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999886544 7888999999999999999999999998875 66777 6789999999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 039931 594 AGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-VTYNTL 642 (783)
Q Consensus 594 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 642 (783)
+.+ +.+..+|..+..+|.+.|++++|.+.|+++++ +.|+. ..+..+
T Consensus 544 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l 590 (597)
T 2xpi_A 544 LLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLL 590 (597)
T ss_dssp HHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHH
Confidence 743 34788899999999999999999999999887 34554 334333
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=9.2e-30 Score=276.57 Aligned_cols=204 Identities=17% Similarity=0.209 Sum_probs=150.1
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 039931 445 AQSLWNELNRRKIFPDA-VAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGK---------LNE 514 (783)
Q Consensus 445 A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~~ 514 (783)
+..+.+++.+++..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555555544333 34667777777777777777777777777777777777777777766543 577
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 515 ALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 515 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 039931 595 GGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC 648 (783)
Q Consensus 595 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 648 (783)
.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888888888888877763
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.5e-26 Score=244.45 Aligned_cols=375 Identities=14% Similarity=0.046 Sum_probs=287.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 039931 329 AGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLP 408 (783)
Q Consensus 329 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 408 (783)
..+.+.|++++|.+.++++.+..+. +...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 3456677777777777777765333 45566666777777777888777777776653 346667777777788888888
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 039931 409 EAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMS 488 (783)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 488 (783)
+|...|+++.+..+ .+..++..+...+.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888877777642 25667777788888888888888888877765433 45566677777778888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-Chh
Q 039931 489 RIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-DIV 567 (783)
Q Consensus 489 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 567 (783)
+.. +.+..+|..+...+.+.|++++|...|+++.+.++. +...+..+...+...|++++|...+++..+. .| +..
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence 653 335677888888888888888888888888876543 5777888888888888888888888888775 34 577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 568 TYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGV 646 (783)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 646 (783)
++..+...|...|++++|.+.++++.+. .| +..+|..+..++.+.|++++|.+.|+++++.. .++..++..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 8888888888888888888888888874 34 56778888888888899999998888888642 23456777777766
Q ss_pred hh-ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhh
Q 039931 647 CC-DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHN 717 (783)
Q Consensus 647 ~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~ 717 (783)
.. |++++|...++++++ ..| +..+|..+...|.+.|++++|+..+++++++.|+ +..+|..++.+|..
T Consensus 316 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKE 385 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHH
Confidence 65 788899999988887 345 4578899999999999999999999999999987 88899999887754
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4e-29 Score=271.57 Aligned_cols=204 Identities=16% Similarity=0.212 Sum_probs=145.7
Q ss_pred HHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---------hHHH
Q 039931 411 WDLLCKMIEKGFPINK-VAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGL---------VDEA 480 (783)
Q Consensus 411 ~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---------~~~A 480 (783)
..+.+++.+++....+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3444445444443332 34566666667777777777777777666666777777777766665443 5677
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039931 481 YGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 481 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 561 GLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNI 614 (783)
Q Consensus 561 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 614 (783)
|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888878888888888888777754
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6.8e-26 Score=242.21 Aligned_cols=363 Identities=14% Similarity=0.031 Sum_probs=238.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 039931 110 LLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC 189 (783)
Q Consensus 110 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 189 (783)
+...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++..++..| .+..+|..++..+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 4566778888888888888887765 45566777777888888888888888888887755 677788888888888888
Q ss_pred hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhH
Q 039931 190 IRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQ 269 (783)
Q Consensus 190 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 269 (783)
+++|...|+++.+.. +.+..+|..+..++.+.|++++| ...++++.+..+ .+...+..+...+...|++++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A-------~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGA-------VQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHH-------HHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHH
Confidence 888888888887654 34456778888888888888877 455666655432 144566667777777788888
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 270 ANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 270 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (783)
|.+.|+++.+..+. +..+|..+...+...|++++|...|+++.+.+.. +...+..+...+...|++++|...|++...
T Consensus 154 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 154 AKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888887765322 4566777777777777777777777776665322 345566666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH
Q 039931 350 KGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAF 429 (783)
Q Consensus 350 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 429 (783)
..+. +..++..+...|.+.|++++|++.|+++.+.+ +.+..+|..+...+.+.|++++|...++++.+.. +.+..++
T Consensus 232 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 308 (388)
T 1w3b_A 232 LSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSL 308 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 4332 45566666666666666666666666666543 1234455556666666666666666666665552 2345555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 430 TVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
..+...+.+.|++++|.+.++++.+..+. +..++..+...+.+.|++++|...|+++.+
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555555544221 344555555555555555555555555554
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-22 Score=225.96 Aligned_cols=453 Identities=10% Similarity=-0.033 Sum_probs=291.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
..+..+...|.+.|++++|+..|+++++.+ |+..++..+...+.+.|++++|+..|+++++.+| .+..++..++.++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHH
Confidence 467788899999999999999999999886 6899999999999999999999999999999876 6778899999999
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 039931 185 CRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKA 264 (783)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 264 (783)
...|++++|...|+++.+.+ +++......++..+.+......+ .+.+..+...+..|+...++.-.......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKL-------KEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHH-------TTC--------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 99999999999999999876 34555555555555443322222 11222222211122222211111111111
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh---cCCHHHHH
Q 039931 265 RDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW---AGRLDEAM 341 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~ 341 (783)
. ..|+.......+..+....... ......+...+......+.. .|++++|.
T Consensus 156 ~----------------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 156 E----------------NLPSVTSMASFFGIFKPELTFA----------NYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp -----------------CCCCHHHHHHHHTTSCCCCCCS----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred c----------------CCchhHHHHHHHhhcCHHHHHH----------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 1 1122222211111111000000 00001112222223332332 56666666
Q ss_pred HHHHHHHH-----C--CC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 039931 342 EFFEDMFE-----K--GI------SPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLP 408 (783)
Q Consensus 342 ~~~~~m~~-----~--g~------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 408 (783)
..|+++.+ . .+ +.+..++..+...+...|++++|...|+++.+.. |+..++..+...+...|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCT
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHH
Confidence 66666655 2 11 1134566677777777777777777777777654 33666777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 039931 409 EAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMS 488 (783)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 488 (783)
+|...++++.+.... +..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.
T Consensus 288 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777766433 5667777777778888888888888777776443 55677777777888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHc
Q 039931 489 RIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLL-PD----NFTFNIIINGFCK---QGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 489 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 560 (783)
+.. +.+..++..+...+.+.|++++|...++++.+.... ++ ...+..+...+.. .|++++|...++++.+.
T Consensus 366 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 366 RKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 652 335667777778888888888888888877664222 11 3377777788888 88888888888888775
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 039931 561 GLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDIT 602 (783)
Q Consensus 561 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 602 (783)
. +.+..++..+...|.+.|++++|.+.++++.+ +.|+..
T Consensus 445 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 445 D-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 3 33567777888888888888888888888877 356543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-22 Score=224.86 Aligned_cols=454 Identities=10% Similarity=-0.031 Sum_probs=322.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 039931 140 SAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAY 219 (783)
Q Consensus 140 ~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (783)
..+..+...+.+.|++++|+..|+++++.+ |+..+|..++.++...|++++|...++++.+.. +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456667777888888888888888888865 577888888888888888888888888887765 45567777788888
Q ss_pred HhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 039931 220 CIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKY 299 (783)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 299 (783)
.+.|++++| ...|+.+...+. ++......++..+.+......+.+.+..+...+..|+...+..-......
T Consensus 84 ~~~g~~~~A-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 154 (514)
T 2gw1_A 84 EGLGKFADA-------MFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK- 154 (514)
T ss_dssp HHTTCHHHH-------HHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHhhHHHH-------HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh-
Confidence 888888777 466777666543 34444455555554444444444444444433333333222211110000
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHH
Q 039931 300 GGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR---AGLEENAF 376 (783)
Q Consensus 300 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~ 376 (783)
....|+.......+..+...... . ...-+.+...+......+.. .|++++|+
T Consensus 155 ---------------~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 155 ---------------QENLPSVTSMASFFGIFKPELTF----A------NYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp -----------------CCCCHHHHHHHHTTSCCCCCC----S------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred ---------------ccCCchhHHHHHHHhhcCHHHHH----H------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 01112221111111100000000 0 00001235555555555554 89999999
Q ss_pred HHHHHHHh-----CCC--------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 039931 377 EAYKIMHQ-----FGL--------TPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLI 443 (783)
Q Consensus 377 ~~~~~m~~-----~~~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 443 (783)
..|+++.+ ..- +.+..++..+...+...|++++|...++++.+.... ..++..+...+...|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCT
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHH
Confidence 99999988 311 123567888889999999999999999999988654 888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 444 GAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMR 523 (783)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 523 (783)
+|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 288 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999887544 67789999999999999999999999998864 4467788999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHH---cCCHHHHHHHHHHHHHC
Q 039931 524 QKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGL-VPD----IVTYNTLIGGYCK---ALDIVRADELVNKMYAG 595 (783)
Q Consensus 524 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 595 (783)
+.... +..++..+...+.+.|++++|...++++.+... .++ ..+|..+...+.. .|++++|.+.++++.+.
T Consensus 366 ~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 366 RKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 87433 677889999999999999999999999986421 111 3389999999999 99999999999999884
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039931 596 GLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVT 638 (783)
Q Consensus 596 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 638 (783)
. +.+..++..+..+|.+.|++++|...|++.++ +.|+...
T Consensus 445 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~ 484 (514)
T 2gw1_A 445 D-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEE 484 (514)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHH
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHH
Confidence 2 33678899999999999999999999999997 3566543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=4.9e-21 Score=208.86 Aligned_cols=378 Identities=12% Similarity=-0.015 Sum_probs=226.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 039931 99 LFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFN 178 (783)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 178 (783)
..|.++.++..+...|.+.|++++|+.+|+++++.. +.+..++..+...+...|++++|+..|+++++.+| .+..++.
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 98 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARL 98 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHH
Confidence 346677899999999999999999999999999875 56789999999999999999999999999999876 6788999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADF---FAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYN 255 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~ 255 (783)
.++.++.+.|++++|...|+++.+.. +.+. .++..++..+.. ..+.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~------------------------------~~~~ 147 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM------------------------------QRLR 147 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH------------------------------HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH------------------------------HHHH
Confidence 99999999999999999999999864 2334 555555444111 0112
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 039931 256 ALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAG 335 (783)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 335 (783)
.+...+.+.|++++|+..|+++.+... .+..++..+..++.+.|++++|.+.++++.+.. +.+..++..+...|...|
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 223334444444444444444444321 133444444444444444444444444444332 123344444444555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHH
Q 039931 336 RLDEAMEFFEDMFEKGISPSIFAFNSI------------IAAYSRAGLEENAFEAYKIMHQFGLTPS-----SCTCSSLL 398 (783)
Q Consensus 336 ~~~~A~~~~~~m~~~g~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li 398 (783)
++++|...|+++....+. +...+..+ ...+.+.|++++|...|+++.+.. |+ ...+..+.
T Consensus 226 ~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERIC 302 (450)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHH
Confidence 555555555554443221 22222222 555556666666666666655532 22 22455555
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----------
Q 039931 399 VGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYI---------- 468 (783)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li---------- 468 (783)
..+.+.|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+..+. +...+..+.
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhccc
Confidence 55666666666666666655542 224555666666666666666666666666554322 334444433
Q ss_pred --HHHHccC-----ChHHHHHHHHHH-HhCC--CCCC-------HHHHHHHHHHHHhcCCHHHHH
Q 039931 469 --NGLSKAG-----LVDEAYGVFLEM-SRIG--FVPN-------NFAYNSLIAGFCNRGKLNEAL 516 (783)
Q Consensus 469 --~~~~~~g-----~~~~A~~~~~~m-~~~~--~~p~-------~~~~~~li~~~~~~g~~~~A~ 516 (783)
..|...| ..+++.+.++++ .+.. ..|+ ...+..+..+|...++.++..
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2233334 566777777763 3321 0122 236777888888777766543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=8.8e-21 Score=206.83 Aligned_cols=389 Identities=12% Similarity=0.010 Sum_probs=303.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 039931 123 VMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHK 202 (783)
Q Consensus 123 A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 202 (783)
+...+.++.... +.+...+..++..+.+.|++++|+.+|+++++..| .+..++..++.++...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444444443 45678899999999999999999999999998865 6788999999999999999999999999998
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 203 YMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNV---VVYNALLNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 279 (783)
.+ +.+..++..+...|.+.|++++| ...|+++.+.... +. .++..++..+...
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A-------~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--------------- 144 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEA-------EDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ--------------- 144 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH---------------
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH---------------
Confidence 76 46688999999999999999999 6788888875421 33 5666666654322
Q ss_pred CCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 280 RDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAF 359 (783)
Q Consensus 280 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 359 (783)
.+..+...+...|++++|...++++.+... .+..++..+...|.+.|++++|...|+++.+..+. +..+|
T Consensus 145 --------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 214 (450)
T 2y4t_A 145 --------RLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAF 214 (450)
T ss_dssp --------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHH
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 233445567778999999999999988643 46788999999999999999999999999886443 78999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCC--
Q 039931 360 NSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSL------------LVGLCKKGRLPEAWDLLCKMIEKGFPIN-- 425 (783)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 425 (783)
..++..|...|++++|+..|+++.+.. +.+...+..+ ...+.+.|++++|...++++.+.... +
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~ 292 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAE 292 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chH
Confidence 999999999999999999999998753 2244444444 78899999999999999999986433 3
Q ss_pred --HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 426 --KVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503 (783)
Q Consensus 426 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 503 (783)
...+..+...+.+.|++++|+..++++.+..+. +...|..+...|...|++++|...|+++.+.. +-+...+..+.
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 347889999999999999999999999876433 78999999999999999999999999999853 23455555555
Q ss_pred H------------HHHhcC-----CHHHHHHHHHH-HHHCCC--CCC-------HHHHHHHHHHHHhcCChHHHH
Q 039931 504 A------------GFCNRG-----KLNEALKLERE-MRQKGL--LPD-------NFTFNIIINGFCKQGRMKPAI 551 (783)
Q Consensus 504 ~------------~~~~~g-----~~~~A~~l~~~-m~~~~~--~p~-------~~~~~~li~~~~~~g~~~~A~ 551 (783)
. .|...| +.+++.+.+++ ..+..+ .|+ ...+..+..+|...++.+++.
T Consensus 371 ~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2 344444 67788888887 343321 122 237888999999998877654
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=5.7e-21 Score=213.50 Aligned_cols=371 Identities=12% Similarity=0.023 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
...+..+...+.+.|++++|+..|+++++.+ +.+..++..+...+.+.|++++|++.|+++++.+| .+..++..++.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 3566777777777777777777777777665 45666777777777777777777777777777654 456667777777
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCC--CCCChHHHHHHHHHH
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEG--LSPNVVVYNALLNGY 261 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~ 261 (783)
+...|++++|...|+.+ .. .|+.. ...+..+...+...+| ...++.+.... ..+........+..+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 170 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQA-------MKVLNENLSKDEGRGSQVLPSNTSLASF 170 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHH-------HHHHHHHCC-------CCCCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHH-------HHHHHHHHHhCccccccccchHhHHHHH
Confidence 77777777777777532 21 12211 1112222222222222 23333332210 000011112222223
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhHHHHHH-HHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 039931 262 VKARDIDQANMLYEEMRSRDIAPDAVTFNIIV-SGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEA 340 (783)
Q Consensus 262 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (783)
....+.+.+...+...... .+....+...+ ..+...+ -......|++++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A 221 (537)
T 3fp2_A 171 FGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKS 221 (537)
T ss_dssp HHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHH
Confidence 3333333333222222111 11111111111 0000000 0001112456677
Q ss_pred HHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039931 341 MEFFEDMFEKGISPSI-------FAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDL 413 (783)
Q Consensus 341 ~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 413 (783)
..+|+++.+..+. +. .++..+...+...|++++|...|+++.+. .|+..++..+...+...|++++|...
T Consensus 222 ~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 222 TDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777664332 22 23445555556666666666666666654 23455555555666666666666666
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 039931 414 LCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFV 493 (783)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (783)
++++.+.... +..++..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +
T Consensus 299 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 375 (537)
T 3fp2_A 299 FQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-P 375 (537)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 6666554322 4455555555555555555555555555543322 33444444555555555555555555544432 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 494 PNNFAYNSLIAGFCNRGKLNEALKLEREMR 523 (783)
Q Consensus 494 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 523 (783)
.+...+..+...+...|++++|...++++.
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 233344444444444444444444444443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.1e-20 Score=211.02 Aligned_cols=427 Identities=11% Similarity=0.017 Sum_probs=253.1
Q ss_pred CchHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 039931 84 GRSKHMVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFR 163 (783)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~ 163 (783)
+....++..+.......|.++.++..+..+|.+.|++++|++.|+++++.+ +.+..++..+...+...|++++|+..|+
T Consensus 39 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333444444444444567889999999999999999999999999999987 5678899999999999999999999996
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHH
Q 039931 164 DMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM--CVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDM 241 (783)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~ 241 (783)
.+...+.+.. ..+..+...+...+|...++++.+.. ..+........+..+....+.+.++ ..+..
T Consensus 118 -~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 185 (537)
T 3fp2_A 118 -VLSLNGDFDG----ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV-------SSVNT 185 (537)
T ss_dssp -HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH-------HTSCC
T ss_pred -HHhcCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH-------HHHhh
Confidence 5444333222 23445566667788999999987642 1122233445555666555554431 11111
Q ss_pred HHHCCCCCChH-HHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHH
Q 039931 242 IQEEGLSPNVV-VYNALLNGYVKA--------RDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDL 312 (783)
Q Consensus 242 m~~~g~~p~~~-~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 312 (783)
... ..+... ....+...+... |++++|..+|+++.+.... +...+..+..
T Consensus 186 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~------------------ 244 (537)
T 3fp2_A 186 SSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAAL------------------ 244 (537)
T ss_dssp CCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHH------------------
T ss_pred ccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHH------------------
Confidence 111 111111 233333333222 3677777777777765322 2222221111
Q ss_pred HhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 039931 313 SVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSC 392 (783)
Q Consensus 313 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 392 (783)
++..+...+...|++++|...|++..+. .|+..+|..+...+...|++++|.+.|+++.+.. +.+..
T Consensus 245 ----------~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 311 (537)
T 3fp2_A 245 ----------ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP 311 (537)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH
T ss_pred ----------HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH
Confidence 2223334455556666666666666554 2335556666666666666666666666665543 22455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLS 472 (783)
Q Consensus 393 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 472 (783)
++..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+..+. +...+..+...+.
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 5666666666666666666666666665332 4456666666666677777777777666655332 4556666667777
Q ss_pred ccCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039931 473 KAGLVDEAYGVFLEMSRIG-----FVPNNFAYNSLIAGFCNR----------GKLNEALKLEREMRQKGLLPDNFTFNII 537 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~~~~p~~~~~~~l 537 (783)
..|++++|...|+++.+.. .......+......+... |++++|...|++..+..+. +...+..+
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l 468 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGL 468 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 7777777777777665431 011112233344455555 7777777777777665432 56667777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
...|.+.|++++|.+.|++..+.
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777777777777777764
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=3.6e-15 Score=170.87 Aligned_cols=499 Identities=14% Similarity=0.135 Sum_probs=331.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHH-HHH
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNA-LLN 259 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~-li~ 259 (783)
+...-+.+++.--+..++.-...| ..|..++|+|...|...++-.+. .+.+ |. -|.+ ++.
T Consensus 846 v~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~---------fL~~--------n~-~yd~~~vg 906 (1630)
T 1xi4_A 846 VAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER---------FLRE--------NP-YYDSRVVG 906 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH---------Hhhc--------cC-cccHHHHH
Confidence 333334445555555666666677 57888888888888877665443 1110 11 1111 223
Q ss_pred HHHhcCChhHHHHHHHH-----------------------HHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 039931 260 GYVKARDIDQANMLYEE-----------------------MRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSG 316 (783)
Q Consensus 260 ~~~~~g~~~~A~~~~~~-----------------------m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 316 (783)
-||...|+.-|.-.|++ +.++ -|...|..++.- +-+-=+++.+......
T Consensus 907 kyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r---~d~~lW~~vl~~-----~n~~RR~Lidqv~a~a 978 (1630)
T 1xi4_A 907 KYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR---KDPELWGSVLLE-----SNPYRRPLIDQVVQTA 978 (1630)
T ss_pred HHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh---cCHHHHHHHhcC-----CcHHHHHHHHHHHHhh
Confidence 34444444444443332 1111 133344443310 1111122333322221
Q ss_pred C--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 039931 317 L--LPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGI--SPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSC 392 (783)
Q Consensus 317 ~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 392 (783)
+ ..++.--...+..|...|...+|++++++..-.+- .-+...-+.++....+. +..+..++..+.... +
T Consensus 979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d-- 1051 (1630)
T 1xi4_A 979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D-- 1051 (1630)
T ss_pred cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c--
Confidence 1 12333445677888899999999999999984321 12345566677777776 556666666665422 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLS 472 (783)
Q Consensus 393 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 472 (783)
...+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++.
T Consensus 1052 -~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1052 -APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL 1116 (1630)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH
Confidence 3447778889999999999999852 12333343433 7789999999988662 5788999999999
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 039931 473 KAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAID 552 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 552 (783)
+.|++++|.+.|.+. -|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 999999999999653 477888999999999999999999999888764 344444569999999999886443
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039931 553 AFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGI 632 (783)
Q Consensus 553 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 632 (783)
+ ++ .|+...|..+...|...|++++|..+|... ..|..+..+|++.|++++|++.+++.
T Consensus 1189 f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1189 F----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred H----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 3 22 467778888999999999999999999985 36999999999999999999999976
Q ss_pred CCCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHH
Q 039931 633 VPNTVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIM 711 (783)
Q Consensus 633 ~p~~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l 711 (783)
-+..+|..+-.++.. +.+..|...... +..+...+..++..|.+.|.+++|+.++++.+.+++. ....|.-|
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-H~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-HhHHHHHH
Confidence 355778776666553 667777665443 3345556778888999999999999999999999865 67788888
Q ss_pred HHHHhhhh-HHHHHHHHHHhcCCCcch-hhhHHH--Hhh-hhhhhhhhhhhhHHHhhh
Q 039931 712 DRAYHNIQ-ENAEFFQETSEKSLFLDF-LMGCMT--LNV-TGDFCVQSMKLQTAAIGR 764 (783)
Q Consensus 712 ~~~y~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~~~~~~~~~~~~~~~~~~ 764 (783)
+..|++.. +...+.-++..+-+.+++ ...|.- +|. .--+|.+.++.+.|...-
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 88887642 444444444444444443 333321 111 233555667777776543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=6.2e-18 Score=177.81 Aligned_cols=329 Identities=12% Similarity=0.055 Sum_probs=223.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 039931 355 SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLD 434 (783)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 434 (783)
|+..+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 45566777777777788888888877777653 235667777777777777777777777777766432 5567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 039931 435 GYFRIGDLIGAQSLWNELNRRKIF--PDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKL 512 (783)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 512 (783)
.+...|++++|...|+++.+..+. .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777665320 02223322211100 01122334566677777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039931 513 NEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKM 592 (783)
Q Consensus 513 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 592 (783)
++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++.
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777665433 56667777777777777777777777777642 335667777777777777777777777777
Q ss_pred HHCCCCCC-HHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHhh-ccHHH
Q 039931 593 YAGGLDPD-ITTYN------------IRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVT-----YNTLMNGVCC-DILDR 653 (783)
Q Consensus 593 ~~~g~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----~~~li~~~~~-~~~~~ 653 (783)
.+. .|+ ...+. .+...+.+.|++++|...++++.+. .|+... +..+...+.. |++++
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 763 332 23222 3366788999999999999998873 344322 2223333333 88999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhh
Q 039931 654 AIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHN 717 (783)
Q Consensus 654 A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~ 717 (783)
|...++++++. .| +..+|..+...|.+.|++++|...++++.+++|+ +..++..+..++..
T Consensus 291 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 291 AIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence 99999998884 45 5678888999999999999999999999999987 78888888777543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=2.2e-17 Score=173.57 Aligned_cols=330 Identities=12% Similarity=-0.013 Sum_probs=233.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALIL 182 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 182 (783)
++..+..+...+.+.|++++|+..|+++++.+ +.+..++..+...+...|++++|+..|+++++..| .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 45678889999999999999999999999876 56788999999999999999999999999999865 57788999999
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCC----CHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKYMCVA----DFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
.+...|++++|...++++.+.. | +...+..+...+. ...+..+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~------------------------------~~~~~~~a 127 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE------------------------------MQRLRSQA 127 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH------------------------------HHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH------------------------------HHHHHHHH
Confidence 9999999999999999998764 4 3333333321100 11233445
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHH
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLD 338 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 338 (783)
..+...|++++|++.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 556666677777777766665532 255566666666666777777777776666553 234556666666677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHH
Q 039931 339 EAMEFFEDMFEKGISPSIFAFN------------SIIAAYSRAGLEENAFEAYKIMHQFGLTPSS----CTCSSLLVGLC 402 (783)
Q Consensus 339 ~A~~~~~~m~~~g~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~ 402 (783)
+|...|++..+..+. +...+. .+...+.+.|++++|...++++.+.... +. ..+..+...+.
T Consensus 206 ~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 206 LSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH
Confidence 777777776664332 233222 2356677888888888888887775322 22 22445667778
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 403 KKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLS 472 (783)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 472 (783)
..|++++|...+++..+.. +.+..++..+...+.+.|++++|.+.|++..+..+. +...+..+..+..
T Consensus 284 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR 351 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 8888888888888887763 336777888888888888888888888888776443 4555666555544
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=5.9e-16 Score=170.32 Aligned_cols=383 Identities=14% Similarity=0.047 Sum_probs=279.7
Q ss_pred cHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCH
Q 039931 320 NCTLYDITVAGLCW----AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR----AGLEENAFEAYKIMHQFGLTPSS 391 (783)
Q Consensus 320 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~ 391 (783)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|++.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555555555655 677777777777777653 55667777777777 777888888887777754 55
Q ss_pred HHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 039931 392 CTCSSLLVGLCK----KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR----IGDLIGAQSLWNELNRRKIFPDAVA 463 (783)
Q Consensus 392 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~ 463 (783)
..+..+...|.. .+++++|...|++..+.| ++..+..+...|.. .+++++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 566667777776 677888888888777765 55667777777776 678888888888877764 6677
Q ss_pred HHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 039931 464 FSAYINGLSK----AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCN----RGKLNEALKLEREMRQKGLLPDNFTFN 535 (783)
Q Consensus 464 ~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~ 535 (783)
+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.| ++..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7777777776 788888888888887754 56667777777775 778888888888887764 456666
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 536 IIINGFCK----QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKA-----LDIVRADELVNKMYAGGLDPDITTYNI 606 (783)
Q Consensus 536 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ 606 (783)
.+...|.. .++.++|++.|++..+.| +...+..+...|... +++++|...+++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 77777777 788889999988887654 456777777777776 88999999999888753 5567777
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039931 607 RMHGYCNIR---KMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC-----DILDRAIIIAAKLLKMAFVPNVVTTNVLLS 678 (783)
Q Consensus 607 li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-----~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 678 (783)
+...|...| ++++|++.|++..+.| +...+..+-..+.. ++.++|...+++..+.+ +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887766 7888999999888764 45555555555543 58899999999988865 4667777888
Q ss_pred HHHh----cCChhhHHHHHHHHhhcCCC-C-CHHHHHHHHHHHhh-hhHHHHHHHHHHhcC
Q 039931 679 HFCK----QGMPEKTLLWGQKLSEISFD-F-DETSYKIMDRAYHN-IQENAEFFQETSEKS 732 (783)
Q Consensus 679 ~~~~----~g~~~~A~~~~~~~~~~~~~-~-d~~~~~~l~~~y~~-~~~~~~~~~~~~~~~ 732 (783)
.|.+ .+++++|..+++++.+.+++ | ++.+...|+..+.. ...+.+.++++++++
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 8887 89999999999999998853 1 45566666655432 234444566666663
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=2e-15 Score=166.08 Aligned_cols=362 Identities=14% Similarity=0.039 Sum_probs=261.4
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCChhHHHHH
Q 039931 237 MIFDMIQEEGLSPNVVVYNALLNGYVK----ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCK----YGGMEDGDRL 308 (783)
Q Consensus 237 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~ 308 (783)
..+....+. -+..++..+...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|.+.
T Consensus 28 ~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 28 EQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 344444443 377778888888887 788999999999888764 56677777777777 7888888888
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 039931 309 LRDLSVSGLLPNCTLYDITVAGLCW----AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSR----AGLEENAFEAYK 380 (783)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 380 (783)
|++..+.+ +...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|++.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 88887765 45566667777776 678888888888887764 56677777777776 678888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 039931 381 IMHQFGLTPSSCTCSSLLVGLCK----KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR----IGDLIGAQSLWNEL 452 (783)
Q Consensus 381 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 452 (783)
+..+.| +...+..+...|.. .++.++|...+++..+.+ +...+..+...|.. .+++++|...|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 887764 56677777777776 778888888888877764 45667777777775 67888888888877
Q ss_pred HhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 039931 453 NRRKIFPDAVAFSAYINGLSK----AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNR-----GKLNEALKLEREMR 523 (783)
Q Consensus 453 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~ 523 (783)
.+.+ +...+..+...|.. .++.++|+..|++..+.| +...+..+...|... +++++|...+++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 7653 45566666666666 677888888888777654 455666666666665 77788888877777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 039931 524 QKGLLPDNFTFNIIINGFCKQG---RMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK----ALDIVRADELVNKMYAGG 596 (783)
Q Consensus 524 ~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 596 (783)
+.| +...+..+...|...| ++++|.+.|++..+. .+...+..|...|.. .+++++|.+.+++..+.|
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 764 4456666666666655 677777777777764 356677777777777 677777777777777643
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 039931 597 LDPDITTYNIRMHGYCN----IRKMNQAAMMLDELVSAG 631 (783)
Q Consensus 597 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 631 (783)
+...+..|...|.+ .+++++|...|++..+.+
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 46666777777776 677777777777777654
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=3.1e-14 Score=163.22 Aligned_cols=376 Identities=12% Similarity=0.060 Sum_probs=281.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 039931 255 NALLNGYVKARDIDQANMLYEEMRSRDI--APDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLC 332 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 332 (783)
...+..|...|.+.+|++++++..-.+- .-+...-+.++....+. +..+..++..+.... ....+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHH
Confidence 4566778888999999999998874311 11233444566555555 445555555554321 1233566778
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 412 (783)
..|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|++
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999998632 2233333333 6788999999888652 56789999999999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 039931 413 LLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGF 492 (783)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 492 (783)
.|.+. -|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.+++++.... .+
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---
Confidence 99663 378888999999999999999999999887764 3433444588999999998854333 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 039931 493 VPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTL 572 (783)
Q Consensus 493 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 572 (783)
.++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 367777888999999999999999999984 38999999999999999999999876 356899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhh---
Q 039931 573 IGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-VTYNTLMNGVCC--- 648 (783)
Q Consensus 573 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~--- 648 (783)
-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+. +.|.. ..|+-+...+++
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCH
Confidence 99999999999999876643 35667777999999999999999999988764 33433 345555555554
Q ss_pred ccHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChhhHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVP------NVVTTNVLLSHFCKQGMPEKTLL 691 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p------~~~~~~~ll~~~~~~g~~~~A~~ 691 (783)
+++.+++++|..-.. +.| +...|.-++-.|.+.|+++.|..
T Consensus 1330 eklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 677788888875433 333 45679999999999999999983
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=5.7e-16 Score=172.24 Aligned_cols=430 Identities=11% Similarity=0.035 Sum_probs=276.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 039931 128 YRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVA 207 (783)
Q Consensus 128 ~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 207 (783)
++.++.+ +-+..+|..++. +.+.|++++|..+|+++++..| .+...|...+..+.+.|++++|..+|+++++.. |
T Consensus 3 e~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p 77 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L 77 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C
T ss_pred hhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Confidence 3444433 345666666666 3566677777777777766543 455566666776777777777777777776542 4
Q ss_pred CHHhHHHHHHHH-HhcCCcchHhhhccchHHHHHHHHH-CCCCC-ChHHHHHHHHHHHh---------cCChhHHHHHHH
Q 039931 208 DFFAYNILINAY-CIRGQTSYALGKCGAGRMIFDMIQE-EGLSP-NVVVYNALLNGYVK---------ARDIDQANMLYE 275 (783)
Q Consensus 208 ~~~~~~~li~~~-~~~g~~~~A~~~~~~a~~~~~~m~~-~g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~ 275 (783)
++..|...+... ...|+.++|.+ .++++|+.... .|..| +...|...+....+ .|+++.|..+|+
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~---~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKE---KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHH---HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHccchhhHHH---HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 555565555422 34466665531 12345555543 24443 46778888877655 788999999999
Q ss_pred HHHhCCCCCCH---hHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q 039931 276 EMRSRDIAPDA---VTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDM----- 347 (783)
Q Consensus 276 ~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----- 347 (783)
+.++. |+. ..|..........|. ..+.. ++. .+.+++..|..++.++
T Consensus 155 ~al~~---P~~~~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~ 209 (530)
T 2ooe_A 155 RGCVN---PMINIEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMK 209 (530)
T ss_dssp HHTTS---CCTTHHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc---hhhhHHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHH
Confidence 99873 332 233322221100110 00111 110 0234455566555542
Q ss_pred -HHCC---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 039931 348 -FEKG---ISPS--------IFAFNSIIAAYSRA----GLE----ENAFEAYKIMHQFGLTPSSCTCSSLLVGLCK---- 403 (783)
Q Consensus 348 -~~~g---~~p~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 403 (783)
.+.. +.|+ ...|...+...... ++. +.+..+|++..... +-+...|...+..+.+
T Consensus 210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~ 288 (530)
T 2ooe_A 210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKL 288 (530)
T ss_dssp HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchh
Confidence 2211 2333 24555555433322 222 46778888887753 3366777777777765
Q ss_pred ---cCChh-------HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 039931 404 ---KGRLP-------EAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDA-VAFSAYINGLS 472 (783)
Q Consensus 404 ---~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~ 472 (783)
.|+++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+|+++.+..+. +. ..|..++..+.
T Consensus 289 ~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~ 367 (530)
T 2ooe_A 289 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFAR 367 (530)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHH
T ss_pred hhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHH
Confidence 68876 88999998886323446888888999999999999999999998886332 33 57888888888
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 039931 473 KAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAG-FCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAI 551 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 551 (783)
+.|+.++|.++|++..+.. +.+...|...... +...|+.++|..+|+...+..+. ++..|..++..+.+.|+.++|.
T Consensus 368 ~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHH
Confidence 8999999999999988752 2233333332222 33689999999999988876432 6788899999999999999999
Q ss_pred HHHHHHHHcC-CCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 552 DAFMDMYRTG-LVPD--IVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 552 ~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.+|++.+..+ ..|+ ...|...+......|+.+.+.++.+++.+
T Consensus 446 ~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 446 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998863 2232 34788888888889999999999998887
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.8e-17 Score=172.08 Aligned_cols=288 Identities=11% Similarity=-0.019 Sum_probs=210.7
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 039931 423 PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSL 502 (783)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 502 (783)
+.+...+..+...+...|++++|.++|+++.+..+. +...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 335556666777777777777777777777665433 44555566667777777777777777777643 3356677777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC
Q 039931 503 IAGFCNRG-KLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALD 581 (783)
Q Consensus 503 i~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 581 (783)
...+...| ++++|...|++..+.... +...|..+...+...|++++|...++++.+.. +.+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 77777788 788888888887776433 56677788888888888888888888887753 2345667778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHhh-ccHH
Q 039931 582 IVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAG--------IVPNTVTYNTLMNGVCC-DILD 652 (783)
Q Consensus 582 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~~~~~li~~~~~-~~~~ 652 (783)
+++|.+.++++.+.. +.+..++..+...+...|++++|...+++..+.. ...+...+..+...+.. |+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888888732 3356778888888888888888888888887521 02223566666655554 7888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhh
Q 039931 653 RAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHN 717 (783)
Q Consensus 653 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~ 717 (783)
+|...++++++.. +.+...|..+...|.+.|++++|..+++++.++.|+ +..++..++..+..
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEM 316 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHH
Confidence 8888888887743 224577888888999999999999999999999987 88888888888743
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1.6e-15 Score=168.70 Aligned_cols=429 Identities=9% Similarity=-0.031 Sum_probs=302.2
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHH
Q 039931 162 FRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDM 241 (783)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~ 241 (783)
|++.++..| .+..+|..++. +.+.|++++|..+|+++.+.- +.+...|..++..+.+.|++++| +.+|++
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a-------~~~~~r 71 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKV-------EKLFQR 71 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH-------HHHHHH
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHH-------HHHHHH
Confidence 455666655 57888988888 478899999999999998763 55677899999999999999888 678888
Q ss_pred HHHCCCCCChHHHHHHHHHH-HhcCChhHHHH----HHHHHHhC-CCCC-CHhHHHHHHHHHHc---------cCChhHH
Q 039931 242 IQEEGLSPNVVVYNALLNGY-VKARDIDQANM----LYEEMRSR-DIAP-DAVTFNIIVSGHCK---------YGGMEDG 305 (783)
Q Consensus 242 m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~t~~~ll~~~~~---------~g~~~~A 305 (783)
.... .|++..|..++... ...|++++|.+ +|++.... |..| +...|...+....+ .|+++.|
T Consensus 72 al~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 72 CLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp HTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred HHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 8765 36777888877533 45677777765 67766543 5444 34566666665443 5677788
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Q 039931 306 DRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIM--- 382 (783)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 382 (783)
..+|++.++.........|..........|. ..+. .++. .+.+++..|..+++.+
T Consensus 150 ~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~ 207 (530)
T 2ooe_A 150 RRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETV 207 (530)
T ss_dssp HHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHH
Confidence 8888887763111111222222111000110 0111 1111 1234567777766653
Q ss_pred ---HhCC---CCCC--------HHHHHHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh--
Q 039931 383 ---HQFG---LTPS--------SCTCSSLLVGLCKK----GRL----PEAWDLLCKMIEKGFPINKVAFTVLLDGYFR-- 438 (783)
Q Consensus 383 ---~~~~---~~p~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 438 (783)
.+.. ++|+ ...|...+...... ++. +.+..+|++.+... +.++..|..++..+.+
T Consensus 208 ~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~ 286 (530)
T 2ooe_A 208 MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSS 286 (530)
T ss_dssp HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 2221 2444 24566555443332 232 47788999998873 4478899999888876
Q ss_pred -----cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHH
Q 039931 439 -----IGDLI-------GAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPN-N-FAYNSLIA 504 (783)
Q Consensus 439 -----~g~~~-------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~li~ 504 (783)
.|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+.
T Consensus 287 ~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 364 (530)
T 2ooe_A 287 KLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMK 364 (530)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHH
T ss_pred hhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHH
Confidence 79987 99999999987322236889999999999999999999999999985 454 3 57888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 039931 505 GFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIING-FCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIV 583 (783)
Q Consensus 505 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 583 (783)
.+.+.|++++|.++|++..+.... +...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.+
T Consensus 365 ~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~ 442 (530)
T 2ooe_A 365 FARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDN 442 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHh
Confidence 889999999999999999986332 33333332222 346899999999999998752 336789999999999999999
Q ss_pred HHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 584 RADELVNKMYAGG-LDPD--ITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 584 ~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+|..+|++.+..+ ..|+ ...|...+......|+.+.+..+++++.+
T Consensus 443 ~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 443 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999853 2332 45788888888999999999999999986
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=5.3e-17 Score=168.53 Aligned_cols=288 Identities=10% Similarity=-0.003 Sum_probs=214.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
.+.++.++..++..+...|++++|+.+|+++++.+ +.+...+..++..+...|++++|..+++++++..+ .+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 34556678888889999999999999999998876 45666777788888999999999999999998765 56778888
Q ss_pred HHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 180 LILGFCRNG-CIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 180 l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
+...+...| ++++|...|+++.+.. +.+..++..+...+...|++++| ...+++..+... .+..++..+.
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A-------~~~~~~a~~~~~-~~~~~~~~l~ 166 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQA-------MAAYFTAAQLMK-GCHLPMLYIG 166 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHH-------HHHHHHHHHHTT-TCSHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHH-------HHHHHHHHHhcc-ccHHHHHHHH
Confidence 899999999 8999999999998765 45577888888888888998888 456666655432 2456777788
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCC--------CCcHHHHHHHHHH
Q 039931 259 NGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGL--------LPNCTLYDITVAG 330 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~li~~ 330 (783)
..|...|++++|.+.|++..+... .+..++..+...+...|++++|...++++.+... .....++..+...
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 888888999999999988887643 3567777777888888888888888877765321 2234566677777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGL 401 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 401 (783)
+...|++++|...|++..+..+. +...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 77777777777777777765433 56667777777777777777777777766643 22445555555555
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=6.6e-16 Score=169.29 Aligned_cols=144 Identities=13% Similarity=-0.059 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHH
Q 039931 547 MKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI--TTYNIRMH-GYCNIRKMNQAAMM 623 (783)
Q Consensus 547 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~-~~~~~g~~~~A~~~ 623 (783)
.++|...+++..+.. +.+..++..+...|...|++++|++.|++.++....|.. ..+..+.. .+...|+.++|+..
T Consensus 316 ~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 316 IGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455666666665542 234455666666666667777777777666653222211 11222222 23455666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 624 LDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 624 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
|++.++ +.|+..... +..+.+.+++++.++.. +.+..+|..+...|...|++++|++.+++++++++.
T Consensus 395 y~kal~--i~~~~~~~~--------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 395 FIEGVK--INQKSREKE--------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHH--SCCCCHHHH--------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHh--cCcccHHHH--------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 666665 344432221 12223334444444321 123455666666666666666666666666666554
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=9e-17 Score=169.79 Aligned_cols=302 Identities=12% Similarity=-0.022 Sum_probs=174.7
Q ss_pred cCChhHHHH-HHHHHHhCCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 039931 299 YGGMEDGDR-LLRDLSVSGLL---PNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEEN 374 (783)
Q Consensus 299 ~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 374 (783)
.|++++|.+ .+++....... .+...+..+...+.+.|++++|...|+++.+..+. +..+|..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 355666665 55544433211 12344555666666777777777777777665433 56666667777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 375 AFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 375 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+... .. .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~-- 178 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G-- 178 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h--
Confidence 777777766653 235566666666677777777777777766665332 22221111000 00 0
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039931 455 RKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFV-PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFT 533 (783)
Q Consensus 455 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 533 (783)
.. ....+.. +..+...|++++|...|+++.+.... ++..++..+...+.+.|++++|...++++.+..+. +..+
T Consensus 179 --~~-~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~ 253 (368)
T 1fch_A 179 --AG-LGPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLL 253 (368)
T ss_dssp ----------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred --hc-ccHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHH
Confidence 00 0001111 22222666777777777776654311 03566677777777777777777777776665322 5667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------------CH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP------------DI 601 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------~~ 601 (783)
+..+...+.+.|++++|...|+++++.. +.+..++..+...|.+.|++++|...++++.+. .| ..
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhh
Confidence 7777777777777777777777777642 234667777777777777777777777777652 12 15
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 602 TTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 602 ~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
.+|..+..+|...|++++|..++++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 67777778888888888777776543
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=5.9e-17 Score=171.20 Aligned_cols=302 Identities=12% Similarity=-0.043 Sum_probs=192.1
Q ss_pred cCCHHHHHH-HHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 039931 334 AGRLDEAME-FFEDMFEKGIS---PSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPE 409 (783)
Q Consensus 334 ~g~~~~A~~-~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 409 (783)
.|++++|.. .|++....... .+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 455666665 55544432111 123445566666666666666666666666553 2245555666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 410 AWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
|...++++.+.... +..++..+...+...|++++|.+.++++.+..+. +...+..+... .. .
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~-- 178 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G-- 178 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h--
Confidence 66666666655322 5555556666666666666666666665554322 11111100000 00 0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 039931 490 IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLP-DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVT 568 (783)
Q Consensus 490 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 568 (783)
..+. ..+.. +..+...|++++|...++++.+..+.. +..++..+...|.+.|++++|...|+++++.. +.+..+
T Consensus 179 --~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 179 --AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp ----------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 0000 11112 233348899999999999998874332 58899999999999999999999999999863 346789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-------CHHH
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIV---P-------NTVT 638 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p-------~~~~ 638 (783)
|..+...+...|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...|+++++.... | ....
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 9999999999999999999999998842 336788999999999999999999999999862111 1 1467
Q ss_pred HHHHHHHHhh-ccHHHHHHHHHH
Q 039931 639 YNTLMNGVCC-DILDRAIIIAAK 660 (783)
Q Consensus 639 ~~~li~~~~~-~~~~~A~~~~~~ 660 (783)
|..+...+.. |+.++|..++++
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHhCChHhHHHhHHH
Confidence 8777777765 788888887765
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=3.1e-17 Score=169.29 Aligned_cols=282 Identities=12% Similarity=0.089 Sum_probs=119.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 039931 116 RVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGES 195 (783)
Q Consensus 116 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 195 (783)
+.|+.++|.+.++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4577888888888872 2358889999999999999999988653 567788888888888999999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 039931 196 LLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYE 275 (783)
Q Consensus 196 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 275 (783)
.++...+. .+++.+.+.++.+|.+.|+++++.+ +++ .|+..+|+.+...|...|++++|...|.
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~-------f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEE-------FIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ----------------------------CHHHHTT-------TTT-------CC----------------CTTTHHHHHH
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHH-------HHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777664 4667788888999999888887743 332 2677789999999999999999999998
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039931 276 EMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPS 355 (783)
Q Consensus 276 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 355 (783)
.+ ..|..+..++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. . .
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~--~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V--H 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T--C
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h--C
Confidence 66 37888888888888888888888887 267888888888888888888866555432 2 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCC------CHh
Q 039931 356 IFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK--GRLPEAWDLLCKMIEKGFPI------NKV 427 (783)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~ 427 (783)
+.-...++..|.+.|++++|+.+++...... ......|+-+...|++- +++.+.++.|.. +.+++| +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 3335568888888889999988888887654 44566677776666654 233344443321 112222 355
Q ss_pred hHHHHHHHHHhcCCHHHHHHH
Q 039931 428 AFTVLLDGYFRIGDLIGAQSL 448 (783)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~ 448 (783)
.|..+...|...++++.|...
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHH
Confidence 677888888888888877653
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.3e-15 Score=164.97 Aligned_cols=387 Identities=13% Similarity=-0.050 Sum_probs=215.4
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----
Q 039931 319 PNCTLYDITVAGLCWAGRLDEAMEFFEDMFEK-----G---ISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQF----- 385 (783)
Q Consensus 319 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 385 (783)
.....||.|...+...|++++|++.|++..+. + -.....+|+.+...|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556777777777778888888777776542 0 1113556777777777777777777777766432
Q ss_pred C-CC-CCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCC
Q 039931 386 G-LT-PSSCTCSSLLVGLCK--KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGY---FRIGDLIGAQSLWNELNRRKIF 458 (783)
Q Consensus 386 ~-~~-p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~ 458 (783)
+ .. ....++..+..++.. .+++++|+..|++.++..+. ++..+..+...+ ...++.++|++.+++..+..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 0 01 123344444444433 33566777777776665433 444444444432 3345556666666666554332
Q ss_pred CCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 459 PDAVAFSAYINGLSK----AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTF 534 (783)
Q Consensus 459 p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 534 (783)
+...+..+...+.. .++.++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+. +..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 34444444433332 345556666666655542 334555666666666666666666666666655332 44455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 535 NIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNI 614 (783)
Q Consensus 535 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 614 (783)
..+...|...+.... ... ...........+..++|...+++..+.. +.+..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 554444422111000 000 0000001112234678888888888732 23457788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH--HHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 039931 615 RKMNQAAMMLDELVSAGIVPNTV--TYNTLMN--GVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTL 690 (783)
Q Consensus 615 g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~--~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 690 (783)
|++++|...|++.++....|... .+..+.. .+..+..++|+..+++.++ +.|+...+.. ..+.+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHH
Confidence 99999999999999854433321 1222211 1224789999999999998 6677544322 234556
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCcchhh
Q 039931 691 LWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLFLDFLM 739 (783)
Q Consensus 691 ~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 739 (783)
+++++.++.+|. ++.+|..|+.+|.. .++++.|.+.+++++++.+..
T Consensus 417 ~~~~~~l~~~p~-~~~~~~~LG~~~~~-~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 417 KIAKMRLSKNGA-DSEALHVLAFLQEL-NEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHHHHHHHHCC--CTTHHHHHHHHHHH-HHHCC----------------
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Confidence 677888888987 88999999999865 688888999999999876543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2e-16 Score=163.23 Aligned_cols=379 Identities=11% Similarity=0.125 Sum_probs=140.7
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039931 298 KYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFE 377 (783)
Q Consensus 298 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 377 (783)
+.|++++|.+.++++ ++..+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 344555555555554 12235555555566666666666666432 255566666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 039931 378 AYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKI 457 (783)
Q Consensus 378 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 457 (783)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+++.|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55554442 2345556666666666666666655553 245556666666666666666666666654
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 039931 458 FPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNII 537 (783)
Q Consensus 458 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 537 (783)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 24666666666666666666666665 2556666666666666666666443332 11233334456
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCC------CHHHHHHHHHH
Q 039931 538 INGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA-GGLDP------DITTYNIRMHG 610 (783)
Q Consensus 538 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p------~~~~~~~li~~ 610 (783)
+..|.+.|++++|..+++..+... +-....|+-|.-+|++- ++++..+.++...+ -+++| +...|.-+...
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 666777777777777776666432 23455566665555543 23333333332222 12222 23456677777
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhh-ccHHHHHHHHH-----------HHHHcCCCCCHHHHHHHH
Q 039931 611 YCNIRKMNQAAMMLDELVSAG-IVPNTVTYNTLMNGVCC-DILDRAIIIAA-----------KLLKMAFVPNVVTTNVLL 677 (783)
Q Consensus 611 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~-~~~~~A~~~~~-----------~~~~~~~~p~~~~~~~ll 677 (783)
|.+.++++.|... |.+.. ..-+...|--+|.-... +.+-+|+.++- ..+...+. .+..+
T Consensus 292 y~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld-----~~r~v 363 (449)
T 1b89_A 292 YDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLD-----HTRAV 363 (449)
T ss_dssp HHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCC-----HHHHH
T ss_pred HHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-----cHHHH
Confidence 7777777777653 33321 11122222222211110 12223333221 11111122 24455
Q ss_pred HHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhc
Q 039931 678 SHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEK 731 (783)
Q Consensus 678 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~ 731 (783)
..+.+.|++.-...+++.+.+.+ +..+-..|-+.|-. .++++..|..++.
T Consensus 364 ~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ie-eed~~~lr~si~~ 413 (449)
T 1b89_A 364 NYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFIT-EEDYQALRTSIDA 413 (449)
T ss_dssp HHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 56678888888888887776544 34444444444433 5777777777665
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=189.42 Aligned_cols=136 Identities=11% Similarity=0.122 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAFMDMY---RTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNI 606 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 606 (783)
-..|||++|++||+.|++++|.++|.+|. ..|+.||++|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45678888888888888888888887765 347888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCC
Q 039931 607 RMHGYCNIRKM-NQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPN 669 (783)
Q Consensus 607 li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~ 669 (783)
+|+++|+.|+. ++|.++|++|.+.|+.||.+||++++.+.. .+..++..+++ ..++.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e---R~~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED---RATVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH---HHHHHHHHGGG-CCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh---HHHHHHHHHHh-CcccCCC
Confidence 88888888874 678888888888888888888888876532 23333444444 3344443
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=3.4e-16 Score=165.18 Aligned_cols=271 Identities=11% Similarity=-0.047 Sum_probs=146.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039931 324 YDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCK 403 (783)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 403 (783)
+..+...+.+.|++++|...|+++.+..+. +..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 444444455555555555555555443222 34444444455555555555555554444432 1133444444444444
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 039931 404 KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGV 483 (783)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 483 (783)
.|++++|...++++.+.... +...+..+. .....+..+...+...|++++|...
T Consensus 146 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPK-YKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHH-HHCC--------------------------------------------CCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHHHHH
Confidence 44444444444444433110 011110000 0122334456667777777777777
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 039931 484 FLEMSRIGFV-PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGL 562 (783)
Q Consensus 484 ~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 562 (783)
|+++.+.... ++..++..+...+...|++++|...++++.+..+. +..+|..+...|.+.|++++|...|+++++..
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 277 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ- 277 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 7777665311 14667777777777777777777777777665433 56677777777777777777777777777642
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 563 VPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-------------DITTYNIRMHGYCNIRKMNQAAMMLDE 626 (783)
Q Consensus 563 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 626 (783)
+.+..+|..+...|...|++++|...++++.+. .| +..+|..+..++...|+.+.+..+.++
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 224667777777777777777777777777652 12 245677777777777777776665543
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=5.5e-16 Score=163.60 Aligned_cols=276 Identities=11% Similarity=-0.044 Sum_probs=195.1
Q ss_pred CHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 285 DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIA 364 (783)
Q Consensus 285 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 364 (783)
+...+..+...+.+.|++++|.+.|+++.+... .+..++..+...|...|++++|...|+++.+..+. +..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 456688899999999999999999999998753 36788999999999999999999999999987544 6889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 039931 365 AYSRAGLEENAFEAYKIMHQFGLTPSSC-TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLI 443 (783)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 443 (783)
.|...|++++|+..|+++.+.. |+.. .+..+. .....+..+...+.+.|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHH
Confidence 9999999999999999998753 3321 121110 12233444555566666666
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 444 GAQSLWNELNRRKIF-PDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 444 ~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
+|...++++.+..+. ++..++..+...+...|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|...|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666554322 145666666777777777777777777766642 345667777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 523 RQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGL-----------VPDIVTYNTLIGGYCKALDIVRADELVNK 591 (783)
Q Consensus 523 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 591 (783)
.+..+. +..++..+...|.+.|++++|...|+++++... ..+..+|..+..++...|+.+.+.++..+
T Consensus 274 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQPG-FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 765333 577777788888888888888888887775310 01357788888999999999888877654
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=185.66 Aligned_cols=151 Identities=14% Similarity=0.153 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 460 DAVAFSAYINGLSKAGLVDEAYGVFLEMSR---IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNI 536 (783)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 536 (783)
-..+||++|++||+.|++++|.++|.+|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457899999999999999999999988764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 039931 537 IINGFCKQGRM-KPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD------ITTYNIRMH 609 (783)
Q Consensus 537 li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~ 609 (783)
+|+++|+.|+. ++|.++|++|.+.|+.||.++|++++.++.+. .+++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999998875 68889999999999999999999888776554 344444444 2345554 344455556
Q ss_pred HHHhcC
Q 039931 610 GYCNIR 615 (783)
Q Consensus 610 ~~~~~g 615 (783)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666665
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=2.6e-15 Score=155.45 Aligned_cols=275 Identities=11% Similarity=-0.029 Sum_probs=172.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 323 LYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLC 402 (783)
Q Consensus 323 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 402 (783)
.+..+...+...|++++|..+|+++.+..+. +..++..+...+...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3444555566666666666666666554332 45555556666666666666666666655542 224445555555555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHccCChHHH
Q 039931 403 KKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYIN--GLSKAGLVDEA 480 (783)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~--~~~~~g~~~~A 480 (783)
..|++++|.+.++++.+.... +...+..+... .|+......+.. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 566666666665555554222 12222111000 001111111212 26667778888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039931 481 YGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT 560 (783)
Q Consensus 481 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 560 (783)
...++++.+.. +.+..++..+...+...|++++|...++++.+.... +..++..+...+...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888877653 346677777888888888888888888887776433 5777888888888888888888888888775
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 561 GLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD-------------ITTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 561 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
. +.+..++..+...|...|++++|.+.++++.+. .|+ ..+|..+..++.+.|++++|..++++.
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 335677888888888888888888888887763 333 567788888888888888888877654
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=2e-15 Score=156.34 Aligned_cols=281 Identities=7% Similarity=-0.104 Sum_probs=198.7
Q ss_pred CHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 285 DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIA 364 (783)
Q Consensus 285 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 364 (783)
+...+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...|+++.+..+. +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 445577788889999999999999999988654 36778888999999999999999999999987543 7888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH--HHHhcCCH
Q 039931 365 AYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLD--GYFRIGDL 442 (783)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~ 442 (783)
.+...|++++|.+.++++.+.... +...+..+...+ |+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 999999999999999999986422 223333221110 01111112212 24556666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 443 IGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREM 522 (783)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 522 (783)
++|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777666655433 56667777777777777777777777776643 345667777777777888888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 523 RQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-----------DIVTYNTLIGGYCKALDIVRADELVNK 591 (783)
Q Consensus 523 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 591 (783)
.+.... +..++..+...+.+.|++++|.+.++++.+..... +..+|..+..++.+.|++++|..++++
T Consensus 233 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 765432 56777778888888888888888888877642111 366788888888888888888887765
Q ss_pred HH
Q 039931 592 MY 593 (783)
Q Consensus 592 m~ 593 (783)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 43
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=8.6e-15 Score=148.24 Aligned_cols=250 Identities=12% Similarity=0.025 Sum_probs=127.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEA 410 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 410 (783)
....|++..|+..+++.....+.+.......+.++|...|+++.|+..++. . -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666665544331111122334455666666666666654433 1 234455555556666666666666
Q ss_pred HHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 411 WDLLCKMIEKGF-PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 411 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
++.++++...+. +-+...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 666666655542 22444555555566666666666666554 23455555555666666666666666666555
Q ss_pred CCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039931 490 IGFVPNNFAY---NSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDI 566 (783)
Q Consensus 490 ~~~~p~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 566 (783)
.. |+.... ..++..+...|++++|..+|+++.+.. +.++..++.+..++.+.|++++|...|+++++.. +-+.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 42 332211 111222233355555555555555542 2245555555555555555555555555555431 1234
Q ss_pred hHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 039931 567 VTYNTLIGGYCKALDIVR-ADELVNKMYA 594 (783)
Q Consensus 567 ~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 594 (783)
.++..++..+...|+.++ +.++++++.+
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455555555555555543 3455555544
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=1.7e-14 Score=146.14 Aligned_cols=225 Identities=10% Similarity=0.027 Sum_probs=133.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 039931 326 ITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTP-SSCTCSSLLVGLCKK 404 (783)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~ 404 (783)
.+...|...|++++|...++.. -.|+..++..+...+...++.++|++.++++...+..| +...+..+...+...
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence 3444555555555555444321 23345555555555555556666666666655544333 233344444555666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccCChHHHH
Q 039931 405 GRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVA---FSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~ 481 (783)
|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+++.+.. |+... ...++..+...|++++|.
T Consensus 115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 666666665554 2355566666666666666666666666665543 22211 112233344557777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHc
Q 039931 482 GVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKP-AIDAFMDMYRT 560 (783)
Q Consensus 482 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 560 (783)
.+|+++.+. .+.+...++.+..++.+.|++++|...|++..+..+. ++.++..++..+...|+.++ +.++++++.+.
T Consensus 187 ~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 187 YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 777777765 3556677777777777778888888877777766443 66777777777777777765 45777777764
Q ss_pred CCCCCh
Q 039931 561 GLVPDI 566 (783)
Q Consensus 561 g~~p~~ 566 (783)
.|+.
T Consensus 265 --~P~~ 268 (291)
T 3mkr_A 265 --HRSH 268 (291)
T ss_dssp --CTTC
T ss_pred --CCCC
Confidence 4543
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=9.8e-13 Score=142.25 Aligned_cols=318 Identities=14% Similarity=-0.049 Sum_probs=175.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039931 109 ALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDY---GSVWKLFRDMIHLGPRPSNYTFNALILGFC 185 (783)
Q Consensus 109 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (783)
.+...+.+.|++++|.+.|++..+.| +..++..|...|...|+. ++|+..|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46677888999999999999998876 334556677777778888 8999999999753 5666777777666
Q ss_pred hcC-----ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHH
Q 039931 186 RNG-----CIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNG 260 (783)
Q Consensus 186 ~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 260 (783)
..| ++++|...|++..+.|. + ..+..|...|...+..+++ ..+.+.+....+.| +...+..|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~----~~a~~~~~~a~~~g---~~~a~~~Lg~~ 150 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPN----VNAQQQISQWQAAG---YPEAGLAQVLL 150 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTT----CCHHHHHHHHHHHT---CTTHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 555 78899999999988763 3 3777788888877766655 23345555555443 45677778888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC---ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc---
Q 039931 261 YVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYG---GMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWA--- 334 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 334 (783)
|...+.++++........+.-...++..+..+...|...| +.++|.+.|++..+.|.. +...+..+...|...
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLG 229 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGS
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCC
Confidence 8888766555554333322211223336666666666677 667777777777666533 333333444444333
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----
Q 039931 335 -GRLDEAMEFFEDMFEKGISPSIFAFNSIIAA-Y--SRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKG----- 405 (783)
Q Consensus 335 -g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----- 405 (783)
+++++|...|++.. . -+...+..|... + ...+++++|+++|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 56666666666665 2 244455555554 2 34566666666666666554 4444555555554 33
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 039931 406 RLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR----IGDLIGAQSLWNELNRRK 456 (783)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~ 456 (783)
++++|...|++.. .| ++..+..|...|.. ..++++|...|++..+.|
T Consensus 302 d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp CHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 5556666555554 22 44444444444443 225555555555554443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5.9e-13 Score=132.29 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 039931 509 RGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADEL 588 (783)
Q Consensus 509 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 588 (783)
.|++++|...++++....+. +...+..+...+...|++++|...++++.+.. +.+..+|..+...|...|++++|.+.
T Consensus 118 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34445555555544443211 33444455555555555555555555555432 22345555555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 589 VNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 589 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+++..+.. +.+...|..+..++.+.|++++|...+++.++
T Consensus 196 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555421 22345555555555555666666555555543
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=2.1e-13 Score=131.74 Aligned_cols=199 Identities=13% Similarity=0.008 Sum_probs=140.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
|.++..+..+...+.+.|++++|+..|+++++.+ +.+...+..+...+.+.|++++|+..|++.++..| .+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 4556778888888999999999999999988876 56788888888999999999999999999988876 567788888
Q ss_pred HHHHHhc-----------CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC
Q 039931 181 ILGFCRN-----------GCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP 249 (783)
Q Consensus 181 ~~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p 249 (783)
...+... |++++|+..+++..+.. +.+...+..+...|...|++++| ...|++..+.. .
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A-------~~~~~~al~~~--~ 149 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKA-------EASLKQALALE--D 149 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHHC--C
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHH-------HHHHHHHHhcc--c
Confidence 8888888 88888888888877654 34566777777777777777777 34555555544 4
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDL 312 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 312 (783)
+...+..+...|...|++++|+..|++..+..+. +...+..+...+...|++++|...+++.
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6777777777777777777777777777765332 5566666667777777777776666554
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=5.3e-13 Score=144.36 Aligned_cols=346 Identities=11% Similarity=0.021 Sum_probs=178.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCh---hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGM---EDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (783)
+...+.+.|++++|.++|++..+.|. ...+..+...+...|+. ++|.+.|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 55667778888888888888877652 33344444555556666 7777777777654 33444445553444
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039931 334 AG-----RLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEE---NAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKG 405 (783)
Q Consensus 334 ~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 405 (783)
.+ +.++|...|++..+.|.. ..+..|...|...+..+ ++.+.+......| +......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 43 667777777777775433 25556666666554432 3444444444433 2334555566666666
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----CChH
Q 039931 406 RLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIG---DLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKA----GLVD 478 (783)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~ 478 (783)
.++++......+.+.-...++..+..|...|.+.| +.++|++.|++..+.|.. +...+..+...|... ++.+
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 55444444333332222223346666666666666 667777777776666543 444444555555433 5666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHH
Q 039931 479 EAYGVFLEMSRIGFVPNNFAYNSLIAG-F--CNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQG-----RMKPA 550 (783)
Q Consensus 479 ~A~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~A 550 (783)
+|+..|++.. . -+...+..+... + ...+++++|.+.|++..+.| ++..+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777776665 2 234444444444 2 34566667777776666654 4555555555554 44 66666
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 039931 551 IDAFMDMYRTGLVPDIVTYNTLIGGYCK----ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCN----IRKMNQAAM 622 (783)
Q Consensus 551 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~ 622 (783)
.+.|++.. . -+...+..|...|.. ..++++|.+.|++..+.| +......|...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 66666655 2 244555555555544 236666666666666544 22233444444443 345666666
Q ss_pred HHHHHHHCC
Q 039931 623 MLDELVSAG 631 (783)
Q Consensus 623 ~~~~m~~~g 631 (783)
.|+...+.|
T Consensus 380 ~~~~A~~~g 388 (452)
T 3e4b_A 380 FSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHCC
Confidence 666665554
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.3e-13 Score=131.22 Aligned_cols=222 Identities=15% Similarity=0.063 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 039931 324 YDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLT--PS----SCTCSSL 397 (783)
Q Consensus 324 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~~l 397 (783)
+..+...+...|++++|...|++..+.. .+...|..+...+...|++++|++.+++..+.... ++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444555555555555555555543 34455555555555555555555555554432100 01 2344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 477 (783)
...+...|++++|...+++..+.. |+. ..+.+.|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~-------------------------------------~~~-------~~~~~~~~~ 121 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH-------------------------------------RTA-------DILTKLRNA 121 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------CCH-------HHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-------------------------------------chh-------HHHHHHhHH
Confidence 444444444444444444444432 111 123333444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 478 DEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 478 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
++|...++++.... +.+...+..+...+...|++++|...+++..+.... +..++..+...+.+.|++++|...++++
T Consensus 122 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 122 EKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44444444444421 112334444445555555555555555555444322 4455555555555555555555555555
Q ss_pred HHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 558 YRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 558 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
++.. +.+..+|..+...+.+.|++++|.+.+++..+
T Consensus 200 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 200 IEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5432 22344555555555555555555555555544
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=1.5e-12 Score=136.25 Aligned_cols=249 Identities=13% Similarity=-0.045 Sum_probs=193.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGD-YGSVWKLFRDMIHLGPRPSNYTFNALI 181 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 181 (783)
+..+|..+...+.+.|++++|+..|+++++.+ +.+..+|+.+...+.+.|+ +++|+..|+++++..| .+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 35688999999999999999999999999987 5678899999999999997 9999999999999876 6788999999
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHH
Q 039931 182 LGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGY 261 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 261 (783)
.++...|++++|+..|+++++.. +.+..+|..+..++.+.|++++| ...++++.+.... +..+|+.+...+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eA-------l~~~~~al~l~P~-~~~a~~~lg~~l 244 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNE-------LQYVDQLLKEDVR-NNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTH-------HHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHH-------HHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 99999999999999999999875 56788999999999999999988 4667777665443 778899999999
Q ss_pred Hh-cCChhHH-----HHHHHHHHhCCCCCCHhHHHHHHHHHHccC--ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 039931 262 VK-ARDIDQA-----NMLYEEMRSRDIAPDAVTFNIIVSGHCKYG--GMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW 333 (783)
Q Consensus 262 ~~-~g~~~~A-----~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 333 (783)
.+ .|..++| ++.|++.++.... +...|..+...+...| +.++|.+.+.++ +. ...+...+..+...|.+
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHH
Confidence 88 6665777 4788888776433 5667777777777777 577777777776 22 23355666777777776
Q ss_pred cC---------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 039931 334 AG---------RLDEAMEFFEDM-FEKGISPSIFAFNSIIAAY 366 (783)
Q Consensus 334 ~g---------~~~~A~~~~~~m-~~~g~~p~~~~~~~li~~~ 366 (783)
.| .+++|.++|+++ .+..+. ....|..+...+
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 53 247777777777 554221 334455544443
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=6.3e-13 Score=128.31 Aligned_cols=196 Identities=14% Similarity=-0.014 Sum_probs=106.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039931 425 NKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIA 504 (783)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 504 (783)
+...+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3444445555555555555555555555544332 44455555555555555555555555555432 223444555555
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 039931 505 GFCNR-----------GKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLI 573 (783)
Q Consensus 505 ~~~~~-----------g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 573 (783)
.+... |++++|...+++..+..+. +...+..+...+...|++++|+..|++.++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 6666777666666665333 45666666666677777777777777766654 5566666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
..|...|++++|+..+++..+. .| +...+..+...+...|++++|+..+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6777777777777777776652 34 4566666666777777777776666654
No 44
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=2.1e-10 Score=128.12 Aligned_cols=459 Identities=12% Similarity=0.041 Sum_probs=286.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---hhhHHHH
Q 039931 120 SAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC---IRIGESL 196 (783)
Q Consensus 120 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~ 196 (783)
..+-+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|++++..-| .....|..-+..-.+.|. ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344455556655555 46777788888777777777778888888777643 556667777777777777 7888888
Q ss_pred HHHHHhCC-CCCCHHhHHHHHHHHHhcCCc----chHhhhccchHHHHHHHHH-CCC-CCC-hHHHHHHHHHHH------
Q 039931 197 LHVMHKYM-CVADFFAYNILINAYCIRGQT----SYALGKCGAGRMIFDMIQE-EGL-SPN-VVVYNALLNGYV------ 262 (783)
Q Consensus 197 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~a~~~~~~m~~-~g~-~p~-~~~~~~li~~~~------ 262 (783)
|++.+... .+|++..|...+....+.++. +++. +..+++|+.... .|. .|+ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r---~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEAR---NIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHH---HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhH---HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 88877653 136777777776665555544 2221 122567776554 365 454 468888887654
Q ss_pred ---hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHH
Q 039931 263 ---KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDE 339 (783)
Q Consensus 263 ---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 339 (783)
..++++.+..+|++.+......-..+|......--..+ ...+..++.+. ..+++.
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~ 260 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHH
Confidence 24457889999999986311111233332222111101 11122222111 112223
Q ss_pred HHHHHHHHHH--CCCC---------------C--C------HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCC
Q 039931 340 AMEFFEDMFE--KGIS---------------P--S------IFAFNSIIAAYSRAG-------LEENAFEAYKIMHQFGL 387 (783)
Q Consensus 340 A~~~~~~m~~--~g~~---------------p--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~ 387 (783)
|...+.++.. .++. | + ...|...+.---..+ ..+.+..+|++.....
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~- 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV- 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-
Confidence 3333333221 0110 0 0 133444444332222 1234566777777652
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------C
Q 039931 388 TPSSCTCSSLLVGLCKKGRLPEAW-DLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRK---------I 457 (783)
Q Consensus 388 ~p~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~ 457 (783)
+-+...|...+..+...|+.++|. +++++.... .+.+...|...+...-+.|+++.|.++|+.+.... -
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 346677877787788888888886 888888875 44466677788888888888888988888877531 0
Q ss_pred CC------------CHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 039931 458 FP------------DAVAFSAYINGLSKAGLVDEAYGVFLEMSRI-GFVPNNFAYNSLIAGFCNR-GKLNEALKLEREMR 523 (783)
Q Consensus 458 ~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~ 523 (783)
.| ....|...+....+.|..+.|..+|....+. + .+....|...+..-.+. ++.+.|.++|+...
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 13 2346888888888889999999999999875 2 12233443333333344 45899999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 039931 524 QKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP--DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDI 601 (783)
Q Consensus 524 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 601 (783)
+. .+-+...|...++.....|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+.++.+++.+. .|+.
T Consensus 498 k~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 498 KY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred HH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 87 33367777888888888999999999999998763211 3467888888888899999999999999984 4654
Q ss_pred HHHHHHHHHH
Q 039931 602 TTYNIRMHGY 611 (783)
Q Consensus 602 ~~~~~li~~~ 611 (783)
.....+++-|
T Consensus 575 ~~~~~f~~ry 584 (679)
T 4e6h_A 575 NKLEEFTNKY 584 (679)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHHh
Confidence 4444444444
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=2e-12 Score=129.97 Aligned_cols=228 Identities=8% Similarity=-0.140 Sum_probs=165.9
Q ss_pred HccCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 039931 472 SKAGLVDEAYGVFLEMSRIGFV---PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMK 548 (783)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 548 (783)
...|++++|+..|+++.+.... .+..++..+...+...|++++|...|+++.+..+. +..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 3456778888888888775311 13556777788888888888888888888776443 6778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 549 PAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 549 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
+|...|+++++.. +.+..++..+...|...|++++|.+.++++.+ +.|+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888888888753 33577888888888888888888888888887 34655555555555677788999999988777
Q ss_pred HCCCCCCHHHHHHHHHHHh-hccHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 629 SAGIVPNTVTYNTLMNGVC-CDILDRAIIIAAKLLKMAFVPN-----VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 629 ~~g~~p~~~~~~~li~~~~-~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
... .++...+. +...+. .+..++|...++++... .|+ ..+|..+...|.+.|++++|+..++++++++|+
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 532 23333343 222233 35667888888887653 232 467888888999999999999999999999875
Q ss_pred CCHHHH
Q 039931 703 FDETSY 708 (783)
Q Consensus 703 ~d~~~~ 708 (783)
+...+
T Consensus 248 -~~~~~ 252 (275)
T 1xnf_A 248 -NFVEH 252 (275)
T ss_dssp -TCHHH
T ss_pred -hHHHH
Confidence 44444
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=3.4e-12 Score=128.01 Aligned_cols=235 Identities=8% Similarity=-0.020 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRP--SNYTFNALIL 182 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 182 (783)
.++......+...|++++|+..|+++++.. +.+...+..+...+...|++++|+..|++++..+..+ ...+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566778888888888888888888875 3455577888888888888888888888888743212 2334778888
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYV 262 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 262 (783)
.+...|++++|...|++..+.. +.+..++..+...|...|++++|+ ..+++..+.. +.+..+|..+...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~-------~~~~~al~~~-~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAI-------QYMEKQIRPT-TTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHH-------HHHGGGCCSS-CCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHH-------HHHHHHhhcC-CCcHHHHHHHHHHHH
Confidence 8888888888888888887654 345567777777777777777774 4444444332 224556666662333
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC---hhHHHHHHHHHHhCC-CCCc------HHHHHHHHHHHH
Q 039931 263 KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG---MEDGDRLLRDLSVSG-LLPN------CTLYDITVAGLC 332 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li~~~~ 332 (783)
..+++++|.+.|+++.+.... +...+..+...+...|+ .++|...++++.+.. ..|+ ..+|..+...|.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 445777777777777765322 34555556666666565 666666666655431 0111 134444445555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 039931 333 WAGRLDEAMEFFEDMFEK 350 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~ 350 (783)
..|++++|...|++..+.
T Consensus 233 ~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 233 INRDKVKADAAWKNILAL 250 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 555555555555555544
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=9.6e-12 Score=130.17 Aligned_cols=233 Identities=10% Similarity=0.030 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 039931 139 ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGC-IRIGESLLHVMHKYMCVADFFAYNILIN 217 (783)
Q Consensus 139 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (783)
..+|+.+...+.+.|++++|+..|+++++..| .+..+|+.+..++...|+ +++|+..|+++++.. +.+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 45688888889999999999999999999876 678899999999999997 999999999999875 457889999999
Q ss_pred HHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 039931 218 AYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHC 297 (783)
Q Consensus 218 ~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 297 (783)
++.+.|++++| ...+++..+.... +..+|..+...+.+.|++++|+..|+++++..+. +...|+.+..++.
T Consensus 175 ~~~~~g~~~eA-------l~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 175 LVEWLRDPSQE-------LEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHTCCTTH-------HHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHccCHHHH-------HHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 99999999998 4566766665433 7889999999999999999999999999987554 6778888888888
Q ss_pred c-cCChhHH-----HHHHHHHHhCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 039931 298 K-YGGMEDG-----DRLLRDLSVSGLLPNCTLYDITVAGLCWAG--RLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRA 369 (783)
Q Consensus 298 ~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 369 (783)
. .|..++| .+.+++.+..... +...|+.+...+...| ++++|.+.+.++ +.. ..+...+..+...|.+.
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHH
Confidence 8 5555777 3667776665432 4556666666666666 467777777766 332 22556667777777665
Q ss_pred C---------CHHHHHHHHHHH-HhC
Q 039931 370 G---------LEENAFEAYKIM-HQF 385 (783)
Q Consensus 370 g---------~~~~A~~~~~~m-~~~ 385 (783)
| ..++|+++|+++ .+.
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred hcccccchHHHHHHHHHHHHHHHHHh
Confidence 3 246777777776 443
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=5.5e-10 Score=124.77 Aligned_cols=457 Identities=9% Similarity=-0.032 Sum_probs=298.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---cchHhh
Q 039931 154 DYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQ---TSYALG 230 (783)
Q Consensus 154 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~ 230 (783)
...+.+..|++.+..+| .|..+|..++..+.+.+.++.+..+|++++.. ++.....|...+..-.+.|+ .+.+
T Consensus 47 ~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v-- 122 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVI-- 122 (679)
T ss_dssp CCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHH--
T ss_pred CCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHH--
Confidence 34566777788888877 79999999999999999999999999999876 36677888888888888887 7766
Q ss_pred hccchHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CCC-HhHHHHHHHHHHc
Q 039931 231 KCGAGRMIFDMIQEEG-LSPNVVVYNALLNGYVKARDI--------DQANMLYEEMRS-RDI-APD-AVTFNIIVSGHCK 298 (783)
Q Consensus 231 ~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~t~~~ll~~~~~ 298 (783)
+.+|++..... ..|++..|...+....+.++. +...++|+..+. .|. .|+ ...|...+.....
T Consensus 123 -----~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 123 -----EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp -----HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh
Confidence 78999887754 147899999998877766654 334578887665 366 554 4567777765432
Q ss_pred ---------cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 039931 299 ---------YGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRA 369 (783)
Q Consensus 299 ---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 369 (783)
.++++.+..+|+.++......-..+|......--..+. ..+.+++.+. .
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~ 255 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------S 255 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------H
T ss_pred ccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------h
Confidence 33466788888888753222222233222111000000 0122222111 1
Q ss_pred CCHHHHHHHHHHHHh--CCC----C-----------C--C------HHHHHHHHHHHHhcC-------ChhHHHHHHHHH
Q 039931 370 GLEENAFEAYKIMHQ--FGL----T-----------P--S------SCTCSSLLVGLCKKG-------RLPEAWDLLCKM 417 (783)
Q Consensus 370 g~~~~A~~~~~~m~~--~~~----~-----------p--~------~~~~~~li~~~~~~g-------~~~~a~~~~~~~ 417 (783)
.+++.|...+.++.. .++ + | + ...|...+..--..+ ..+.+..+|++.
T Consensus 256 ~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~a 335 (679)
T 4e6h_A 256 AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQA 335 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHH
Confidence 233344444444321 011 0 1 0 123444443322222 123456678888
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-----
Q 039931 418 IEKGFPINKVAFTVLLDGYFRIGDLIGAQ-SLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIG----- 491 (783)
Q Consensus 418 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----- 491 (783)
+.. ++.+...|...+..+...|+.++|. ++|++..... +.+...|-.++...-+.|++++|.++|+.+.+..
T Consensus 336 L~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~ 413 (679)
T 4e6h_A 336 AQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 413 (679)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 776 4447888888888888899998996 9999988743 3366777888888888999999999999887631
Q ss_pred ----CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHH
Q 039931 492 ----FVPN------------NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQG-RMKPAIDAF 554 (783)
Q Consensus 492 ----~~p~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~ 554 (783)
..|+ ..+|...+....+.|..+.|..+|.+..+.-..+....|...+..-.+.+ +.+.|..+|
T Consensus 414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~if 493 (679)
T 4e6h_A 414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVL 493 (679)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 0132 23567777777788889999999999887611112334433333333444 589999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039931 555 MDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP--DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGI 632 (783)
Q Consensus 555 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 632 (783)
+..++. ++-+...|...++.....|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+..+.+++.+.
T Consensus 494 e~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~-- 570 (679)
T 4e6h_A 494 ELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK-- 570 (679)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--
T ss_pred HHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 988876 34456677788888888899999999999988743212 3467888888888889999999999999863
Q ss_pred CCCHHHHHHHHHHH
Q 039931 633 VPNTVTYNTLMNGV 646 (783)
Q Consensus 633 ~p~~~~~~~li~~~ 646 (783)
.|+......+++-|
T Consensus 571 ~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 571 FPEVNKLEEFTNKY 584 (679)
T ss_dssp STTCCHHHHHHHHT
T ss_pred CCCCcHHHHHHHHh
Confidence 34443444444443
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=1.1e-12 Score=131.88 Aligned_cols=222 Identities=12% Similarity=-0.027 Sum_probs=135.1
Q ss_pred hcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhh
Q 039931 116 RVEMSAEVMEILYRMREVGIM---PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRI 192 (783)
Q Consensus 116 ~~g~~~~A~~~~~~~~~~g~~---~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 192 (783)
..|++++|+..|+++++.... .+..++..+...+...|++++|...|+++++..| .+..++..++..+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 346678888888888776321 2345677777788888888888888888877755 467777778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHH
Q 039931 193 GESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANM 272 (783)
Q Consensus 193 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 272 (783)
|...++++.+.. +.+..++..+...|.+.|++++| ...++++.+. .|+.......+..+...|++++|..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A-------~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLA-------QDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHH-------HHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHH
Confidence 888888777653 34566677777777777777776 3455555443 2333334444444455677777777
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 273 LYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLP---NCTLYDITVAGLCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 273 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (783)
.+++..... +++...+. ++..+...++.++|.+.++.+....... +...+..+...|.+.|++++|...|++..+
T Consensus 166 ~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 166 VLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 776665542 22333332 4445555555566666666554432110 123444445555555555555555555554
Q ss_pred C
Q 039931 350 K 350 (783)
Q Consensus 350 ~ 350 (783)
.
T Consensus 244 ~ 244 (275)
T 1xnf_A 244 N 244 (275)
T ss_dssp T
T ss_pred C
Confidence 3
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=6.8e-12 Score=125.81 Aligned_cols=230 Identities=12% Similarity=-0.005 Sum_probs=113.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 039931 326 ITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPS--SCTCSSLLVGLCK 403 (783)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~ 403 (783)
.....+...|++++|...|++..+..+. +...+..+...|...|++++|++.+++..+.+..|+ ..+|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3444555666666666666666654332 344566666666666666666666666665321111 1225555556666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 039931 404 KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGV 483 (783)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 483 (783)
.|++++|+..+++..+.... +..++..+...|...|++++|...|++..+..+. +...+..+...+...+++++|.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666554322 4455555555555566666665555555544222 344444444222223355555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChHHHHHH
Q 039931 484 FLEMSRIGFVPNNFAYNSLIAGFCNRGK---LNEALKLEREMRQKG-LLPD------NFTFNIIINGFCKQGRMKPAIDA 553 (783)
Q Consensus 484 ~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~~~ 553 (783)
|+++.+.. +.+...+..+...+...|+ +++|...+++..+.. ..|+ ...|..+...|.+.|++++|.+.
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555432 2223444444444444444 444444444443321 0111 12344444444444555555554
Q ss_pred HHHHHH
Q 039931 554 FMDMYR 559 (783)
Q Consensus 554 ~~~m~~ 559 (783)
|+++++
T Consensus 244 ~~~al~ 249 (272)
T 3u4t_A 244 WKNILA 249 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444444
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=9.9e-12 Score=123.05 Aligned_cols=165 Identities=14% Similarity=0.003 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039931 462 VAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLP-DNFTFNIIING 540 (783)
Q Consensus 462 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~ 540 (783)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.+..| +...+..+...
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV 150 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence 333444444444444444444444443321 1233344444444444444444444444444311112 23344444444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 039931 541 FCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQA 620 (783)
Q Consensus 541 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 620 (783)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHH
Confidence 445555555555555444431 1234444455555555555555555555544421 22334444445555555555555
Q ss_pred HHHHHHHHH
Q 039931 621 AMMLDELVS 629 (783)
Q Consensus 621 ~~~~~~m~~ 629 (783)
.+.++++.+
T Consensus 229 ~~~~~~~~~ 237 (252)
T 2ho1_A 229 ASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=5.6e-11 Score=119.25 Aligned_cols=219 Identities=12% Similarity=-0.025 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 393 TCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFR----IGDLIGAQSLWNELNRRKIFPDAVAFSAYI 468 (783)
Q Consensus 393 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 468 (783)
++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33334444444444444444444444421 23334444444444 444444444444444432 344444444
Q ss_pred HHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 469 NGLSK----AGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCN----RGKLNEALKLEREMRQKGLLPDNFTFNIIING 540 (783)
Q Consensus 469 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 540 (783)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 44444 555555555555554432 44445555555555 555555555555555543 34444455555
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 541 FCK----QGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK----ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYC 612 (783)
Q Consensus 541 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 612 (783)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 555 556666666666555532 34455555555555 566666666666665532 2445555555565
Q ss_pred h----cCCHHHHHHHHHHHHH
Q 039931 613 N----IRKMNQAAMMLDELVS 629 (783)
Q Consensus 613 ~----~g~~~~A~~~~~~m~~ 629 (783)
+ .+++++|.+.|++..+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHH
Confidence 5 5666666666666554
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=4.1e-11 Score=120.30 Aligned_cols=224 Identities=9% Similarity=-0.098 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLR----VGDYGSVWKLFRDMIHLGPRPSNYTF 177 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 177 (783)
.++.++..+...|.+.|++++|...|++..+. .+..++..+...+.. .|++++|+..|++..+.+ +..++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45667777888888888888888888888773 345677777777877 888888888888887764 56677
Q ss_pred HHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCcchHhhhccchHHHHHHHHHCCCCC
Q 039931 178 NALILGFCR----NGCIRIGESLLHVMHKYMCVADFFAYNILINAYCI----RGQTSYALGKCGAGRMIFDMIQEEGLSP 249 (783)
Q Consensus 178 ~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~a~~~~~~m~~~g~~p 249 (783)
..+...+.. .+++++|+..|++..+.+ +..++..+...|.. .+++++| ...+++..+.+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A-------~~~~~~a~~~~--- 144 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKA-------VEYFTKACDLN--- 144 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH-------HHHHHHHHHTT---
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHH-------HHHHHHHHhcC---
Confidence 777777777 778888887777777653 55666666666666 6666666 34555554443
Q ss_pred ChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCcH
Q 039931 250 NVVVYNALLNGYVK----ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCK----YGGMEDGDRLLRDLSVSGLLPNC 321 (783)
Q Consensus 250 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 321 (783)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|.+.+++..+.+. .
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~ 218 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---G 218 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---H
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---H
Confidence 44555566666665 666666666666665542 33444444444444 4555555555555444321 3
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 039931 322 TLYDITVAGLCW----AGRLDEAMEFFEDMFEK 350 (783)
Q Consensus 322 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 350 (783)
..+..+...|.. .+++++|.+.|++..+.
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 333334444444 44444444444444443
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=1.4e-11 Score=122.04 Aligned_cols=200 Identities=15% Similarity=-0.018 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039931 391 SCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYING 470 (783)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 470 (783)
...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 34455566666666666666666666665532 24556666666666666666666666666554332 45566666666
Q ss_pred HHccCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 039931 471 LSKAGLVDEAYGVFLEMSRIGFVP-NNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKP 549 (783)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 549 (783)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665522223 3445555666666666666666666666654322 45566666666666666666
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 550 AIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 550 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
|...++++.+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666665532 23455566666666666666666666666665
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=1.8e-11 Score=118.64 Aligned_cols=200 Identities=14% Similarity=-0.021 Sum_probs=104.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039931 426 KVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAG 505 (783)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 505 (783)
...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 334444455555555555555555554443221 34445555555555555555555555554432 2244455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHH
Q 039931 506 FCNR-GKLNEALKLEREMRQKGLLP-DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIV 583 (783)
Q Consensus 506 ~~~~-g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 583 (783)
+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5555 55555555555555521122 23445555555566666666666666555532 223455555555666666666
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 584 RADELVNKMYAGGLD-PDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 584 ~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+|.+.++++.+.. + .+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666655522 1 2444455555555566666666666655543
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=1.7e-11 Score=118.74 Aligned_cols=198 Identities=13% Similarity=-0.083 Sum_probs=100.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 039931 394 CSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSK 473 (783)
Q Consensus 394 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 473 (783)
+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|.+.++++.+.... +...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 33444444444444444444444444321 13344444444444555555555555444443221 34445555555555
Q ss_pred c-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 039931 474 A-GLVDEAYGVFLEMSRIGFVPN-NFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAI 551 (783)
Q Consensus 474 ~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 551 (783)
. |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.... +...+..+...+.+.|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHH
Confidence 5 555555555555554211222 344555555555666666666666655554322 4555566666666666666666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 552 DAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 552 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
..++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666665542113445555555555666666666666666554
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=7.4e-12 Score=123.07 Aligned_cols=198 Identities=14% Similarity=0.023 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 039931 357 FAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGY 436 (783)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 436 (783)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 334444444555555555555555554432 12344444444445555555555555555444422 1344444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039931 437 FRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEAL 516 (783)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 516 (783)
...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 4445555555544444443221 33444444444444444444444444444321 223334444444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039931 517 KLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 517 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 559 (783)
..++++.+.... +..++..+...|...|++++|...++++.+
T Consensus 180 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 180 SQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 444444433211 334444444444444444444444444444
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=7.3e-12 Score=123.11 Aligned_cols=197 Identities=13% Similarity=0.053 Sum_probs=91.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039931 428 AFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFC 507 (783)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 507 (783)
.+..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 3444444444444444444444444443222 34444444444555555555555555544432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 039931 508 NRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADE 587 (783)
Q Consensus 508 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 587 (783)
..|++++|.+.++++.+.... +...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|.+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555544322 44455555555555555555555555555432 2244555555555555566666665
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 588 LVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 588 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.++++.+.. +.+..++..+..+|...|++++|...++++++
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 555555421 22345555555666666666666666665554
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=2.2e-12 Score=138.28 Aligned_cols=207 Identities=13% Similarity=0.017 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCCHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSE----SAITILFKSLLRVGDYGSVWKLFRDMIHLG-----PRPSNY 175 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~-----~~~~~~ 175 (783)
..+..+...+...|++++|+..|+++++.+ +.+. ..+..+...+...|++++|...|+++++.. ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 456677889999999999999999999875 2333 478889999999999999999999987641 123456
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCC-----CCCCHHhHHHHHHHHHhcCC-----------------cchHhhhcc
Q 039931 176 TFNALILGFCRNGCIRIGESLLHVMHKYM-----CVADFFAYNILINAYCIRGQ-----------------TSYALGKCG 233 (783)
Q Consensus 176 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 233 (783)
++..+...+...|++++|...+++..+.. .+....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78899999999999999999999877541 12235578889999999999 777766555
Q ss_pred chHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HhHHHHHHHHHHccCChhHHHHH
Q 039931 234 AGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIA-PD----AVTFNIIVSGHCKYGGMEDGDRL 308 (783)
Q Consensus 234 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~A~~~ 308 (783)
++.++...... ......++..+...|...|++++|++.|++..+.... ++ ..++..+...+...|++++|.+.
T Consensus 208 ~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 208 ENLKLMRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 55555444321 0112357778888888999999999988887653110 01 12455555566666666666666
Q ss_pred HHHHHh
Q 039931 309 LRDLSV 314 (783)
Q Consensus 309 ~~~~~~ 314 (783)
+++...
T Consensus 286 ~~~al~ 291 (411)
T 4a1s_A 286 YKRTLA 291 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=5.8e-12 Score=134.53 Aligned_cols=171 Identities=16% Similarity=0.078 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--------------------hhH
Q 039931 210 FAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARD--------------------IDQ 269 (783)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------------------~~~ 269 (783)
.++..+...|...|++++|+..++++..+....... .....++..+...|...|+ +++
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 344555555555566655554444444443332110 0113467777788888888 788
Q ss_pred HHHHHHHHHhC----CCCC-CHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC-C----cHHHHHHHHHHHHhcCCHHH
Q 039931 270 ANMLYEEMRSR----DIAP-DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLL-P----NCTLYDITVAGLCWAGRLDE 339 (783)
Q Consensus 270 A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~ 339 (783)
|.+.+++..+. +..| ...++..+...+...|++++|.+.+++..+.... + ...++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88777766442 1111 1234555555666666666666666555432100 0 11244444555555555555
Q ss_pred HHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039931 340 AMEFFEDMFEKGIS-PS----IFAFNSIIAAYSRAGLEENAFEAYKIM 382 (783)
Q Consensus 340 A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 382 (783)
|...+++..+.... ++ ..++..+...|...|++++|...+++.
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 55555554432000 00 233444444444555555555444444
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=5.8e-12 Score=134.50 Aligned_cols=279 Identities=11% Similarity=0.015 Sum_probs=209.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC-C
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS----ESAITILFKSLLRVGDYGSVWKLFRDMIHL----GPR-P 172 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~~~-~ 172 (783)
.....+..+...+...|++++|...|+++++.+ +.+ ..++..+...+...|++++|...|++++.. +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 445678888999999999999999999999875 233 357888999999999999999999988654 111 2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHhcCC--------------------cch
Q 039931 173 SNYTFNALILGFCRNGCIRIGESLLHVMHKYMC-VAD----FFAYNILINAYCIRGQ--------------------TSY 227 (783)
Q Consensus 173 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~ 227 (783)
...++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245788899999999999999999998875310 012 4578889999999999 788
Q ss_pred HhhhccchHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHccCC
Q 039931 228 ALGKCGAGRMIFDMIQEEGLSP-NVVVYNALLNGYVKARDIDQANMLYEEMRSRDI-APD----AVTFNIIVSGHCKYGG 301 (783)
Q Consensus 228 A~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~ 301 (783)
|+..++.+..++... +..| ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 166 A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 876665555554443 1111 245788889999999999999999999875311 112 2368888889999999
Q ss_pred hhHHHHHHHHHHhCCC----CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCC
Q 039931 302 MEDGDRLLRDLSVSGL----LP-NCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGIS-PS----IFAFNSIIAAYSRAGL 371 (783)
Q Consensus 302 ~~~A~~~~~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~ 371 (783)
+++|...+++...... .+ ...++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999998875321 11 1557788889999999999999999988763111 11 4566777777788888
Q ss_pred HHHHHHHHHHHHh
Q 039931 372 EENAFEAYKIMHQ 384 (783)
Q Consensus 372 ~~~A~~~~~~m~~ 384 (783)
+++|.+.+++..+
T Consensus 323 ~~~A~~~~~~al~ 335 (406)
T 3sf4_A 323 HDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777654
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=7e-12 Score=129.77 Aligned_cols=241 Identities=10% Similarity=0.010 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCCCHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS----ESAITILFKSLLRVGDYGSVWKLFRDMIHL----G-PRPSNY 175 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 175 (783)
..+......+...|++++|...|+++++.+ +.+ ...+..+...+...|++++|.+.|++++.. + ......
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 356667788999999999999999999875 233 367888999999999999999999987654 1 112355
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHhcCC--------------------cchHhh
Q 039931 176 TFNALILGFCRNGCIRIGESLLHVMHKYMC-VAD----FFAYNILINAYCIRGQ--------------------TSYALG 230 (783)
Q Consensus 176 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 230 (783)
++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788899999999999999999998765311 112 3478888899999999 677765
Q ss_pred hccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HhHHHHHHHHHHccCChhHH
Q 039931 231 KCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIA-PD----AVTFNIIVSGHCKYGGMEDG 305 (783)
Q Consensus 231 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~A 305 (783)
.++++..+...... ......++..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|++++|
T Consensus 165 ~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 165 LYEENLSLVTALGD--RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55544444443311 0112346777888888889999999888887653100 01 12455555555566666666
Q ss_pred HHHHHHHHhCCCC-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 306 DRLLRDLSVSGLL-----PNCTLYDITVAGLCWAGRLDEAMEFFEDMF 348 (783)
Q Consensus 306 ~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 348 (783)
...+++....... ....++..+...+...|++++|...+++..
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6655554432100 002233344444444444444444444443
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.38 E-value=1.7e-11 Score=131.38 Aligned_cols=206 Identities=11% Similarity=0.032 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHhC----C-CCCCHHh
Q 039931 141 AITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN----YTFNALILGFCRNGCIRIGESLLHVMHKY----M-CVADFFA 211 (783)
Q Consensus 141 ~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~ 211 (783)
.+..+...+...|++++|+..|+++++.++. +. ..+..+...+...|++++|...+++..+. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4455677889999999999999999998653 33 47889999999999999999999988653 1 1234568
Q ss_pred HHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-----------------hhHHHHHH
Q 039931 212 YNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARD-----------------IDQANMLY 274 (783)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 274 (783)
+..+...|...|++++|+..++++.++...... ......++..+...|...|+ +++|++.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGD--RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 889999999999999998777776666655421 11234578888899999999 88888888
Q ss_pred HHHHhC----CCCC-CHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC-C----cHHHHHHHHHHHHhcCCHHHHHHHH
Q 039931 275 EEMRSR----DIAP-DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLL-P----NCTLYDITVAGLCWAGRLDEAMEFF 344 (783)
Q Consensus 275 ~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~ 344 (783)
++..+. +..| ...++..+...+...|++++|.+.+++..+.... . ....+..+...|...|++++|...|
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 776542 1111 1234555555666666666666666655432110 0 0113444444555555555555555
Q ss_pred HHHHH
Q 039931 345 EDMFE 349 (783)
Q Consensus 345 ~~m~~ 349 (783)
++...
T Consensus 287 ~~al~ 291 (411)
T 4a1s_A 287 KRTLA 291 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=9.7e-12 Score=128.71 Aligned_cols=283 Identities=17% Similarity=0.058 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CCCHHh
Q 039931 140 SAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPS---NYTFNALILGFCRNGCIRIGESLLHVMHKY----MC-VADFFA 211 (783)
Q Consensus 140 ~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~ 211 (783)
..+......+...|++++|+..|+++++..+... ...+..+...+...|++++|...+++..+. +. +....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4455667788999999999999999999865322 367889999999999999999999987643 11 123567
Q ss_pred HHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--------------------hhHHH
Q 039931 212 YNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARD--------------------IDQAN 271 (783)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------------------~~~A~ 271 (783)
+..+...|...|++++|+..++++.++...... ......++..+...|...|+ +++|.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 888999999999999998766655555443211 00114478888889999999 88888
Q ss_pred HHHHHHHhC----CCCC-CHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 272 MLYEEMRSR----DIAP-DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFED 346 (783)
Q Consensus 272 ~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 346 (783)
+.+++..+. +..| ...++..+...+...|++++|.+.+++..+....
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------------------- 215 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---------------------------- 215 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh----------------------------
Confidence 887776432 1001 1223444444555555555555555544322000
Q ss_pred HHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 039931 347 MFEKGI-SPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLT-PS----SCTCSSLLVGLCKKGRLPEAWDLLCKMIEK 420 (783)
Q Consensus 347 m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 420 (783)
.+. .....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.
T Consensus 216 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 216 ---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp ---HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 000 001224455555555555555555555554332100 01 334555556666666666666666655443
Q ss_pred CC-----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 039931 421 GF-----PINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR 455 (783)
Q Consensus 421 ~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 455 (783)
.. .....++..+...|.+.|++++|...+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 10 111335666677777777777777777776654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=6.9e-10 Score=113.40 Aligned_cols=182 Identities=8% Similarity=-0.032 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHH
Q 039931 443 IGAQSLWNELNRR-KIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPN-NF-AYNSLIAGFCNRGKLNEALKLE 519 (783)
Q Consensus 443 ~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~l~ 519 (783)
++|..+|++..+. .+. +...|..++..+.+.|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|
T Consensus 81 ~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5555556555552 221 4445555666666666666666666666553 232 22 5555666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C
Q 039931 520 REMRQKGLLPDNFTFNIIINGFC-KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGG-L 597 (783)
Q Consensus 520 ~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 597 (783)
++..+.... +...|...+.... ..|++++|..+|++.++.. +-+...|..++..+.+.|++++|..+|++.++.. +
T Consensus 158 ~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 666654322 3333333322211 2567777777777766541 2245666666777777777777777777777642 3
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 598 DP--DITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 598 ~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.| ....|..++..+.+.|+.++|..+++++.+
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 345666667777777777777777777665
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=1.5e-10 Score=108.22 Aligned_cols=164 Identities=13% Similarity=0.035 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 427 VAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGF 506 (783)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 506 (783)
.+|..+...|.+.|++++|++.|++..+..+. +..++..+...|.+.|++++|...+....... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 33444444444444444444444444433222 33344444444444444444444444443321 12223333333334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 039931 507 CNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRAD 586 (783)
Q Consensus 507 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 586 (783)
...++++.|...+.+.....+. +...+..+...|.+.|++++|++.|++.++.. +.+..+|..+...|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 4444444444444444333221 33334444444444444444444444444321 112333444444444444444444
Q ss_pred HHHHHHHH
Q 039931 587 ELVNKMYA 594 (783)
Q Consensus 587 ~~~~~m~~ 594 (783)
+.|++.++
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=7.8e-10 Score=113.00 Aligned_cols=216 Identities=14% Similarity=-0.014 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHh-cCCCCCHHHHHHHHHHHH
Q 039931 121 AEVMEILYRMREVGIMPSESAITILFKSLLR-------VGDY-------GSVWKLFRDMIH-LGPRPSNYTFNALILGFC 185 (783)
Q Consensus 121 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 185 (783)
++|..+|+++++.. +.+...|..++..+.. .|++ ++|..+|++.++ ..| .+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 56667777766654 4566667666666543 3554 666666666666 333 44556666666666
Q ss_pred hcCChhhHHHHHHHHHhCCCCCC-HH-hHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHH-
Q 039931 186 RNGCIRIGESLLHVMHKYMCVAD-FF-AYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYV- 262 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~- 262 (783)
+.|++++|..+|+++++. .|+ .. +|..++..+.+.|++++| +.+|++..+... ++...|...+....
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A-------~~~~~~a~~~~p-~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG-------RMIFKKAREDAR-TRHHVYVTAALMEYY 180 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHH-------HHHHHHHHTSTT-CCTHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHH-------HHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 666666666666666653 232 22 455555555555555555 344554444321 12333332222211
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCC-CCC--cHHHHHHHHHHHHhcCCHHH
Q 039931 263 KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSG-LLP--NCTLYDITVAGLCWAGRLDE 339 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~ 339 (783)
..|++++|..+|++..+.... +...|..++..+.+.|+.++|..+|++..... +.| ....|..++..+.+.|+.++
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 135555555555555443211 33444444444444444444444444444431 122 23344444444444444444
Q ss_pred HHHHHHHHHH
Q 039931 340 AMEFFEDMFE 349 (783)
Q Consensus 340 A~~~~~~m~~ 349 (783)
|..+++++.+
T Consensus 260 a~~~~~~a~~ 269 (308)
T 2ond_A 260 ILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=2e-10 Score=107.39 Aligned_cols=168 Identities=10% Similarity=-0.005 Sum_probs=131.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALI 181 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 181 (783)
.++.+|..|..+|.+.|++++|+..|++.++.+ +.+..++..+...+.+.|++++|+..+.......+ .+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence 356788888999999999999999999988876 56778888888888899999999999888888765 5667777788
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHH
Q 039931 182 LGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGY 261 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 261 (783)
..+...++++.|...+.+..+.. +.+..++..+...|.+.|++++|+ +.|++..+..+ .+..+|..+...|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~-------~~~~~~l~~~p-~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAI-------EAYEKTISIKP-GFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHH-------HHHHHHHHhcc-hhhhHHHHHHHHH
Confidence 88888888888888888887654 456677788888888888888874 45555555432 2567788888888
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 039931 262 VKARDIDQANMLYEEMRSR 280 (783)
Q Consensus 262 ~~~g~~~~A~~~~~~m~~~ 280 (783)
.+.|++++|++.|++.++.
T Consensus 152 ~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 152 EGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHhC
Confidence 8888888888888887765
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=6.3e-12 Score=128.71 Aligned_cols=185 Identities=16% Similarity=0.097 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREV-------GIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN 174 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 174 (783)
.+..++..+...|...|++++|...|+++.+. ..+....++..+...+...|++++|...|++++...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 99 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR----- 99 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Confidence 34567888888888888888888888887763 222334456666666777777777777776665431
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHH
Q 039931 175 YTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVY 254 (783)
Q Consensus 175 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~ 254 (783)
+.......+....++..+...|...|++++|+..++++.++..............++
T Consensus 100 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 100 -----------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp -----------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 000000001122334444444444455544443333333344333221111245678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 039931 255 NALLNGYVKARDIDQANMLYEEMRSR------DIAP-DAVTFNIIVSGHCKYGGMEDGDRLLRDLSV 314 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 314 (783)
..+...+...|++++|++.|+++.+. +-.| ...++..+...+...|++++|.+.++++.+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998764 1122 234577777888888888888888888765
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=8.3e-12 Score=127.83 Aligned_cols=144 Identities=16% Similarity=0.112 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC----
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREV------G-IMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLG---- 169 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g-~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~---- 169 (783)
+....++..+...|...|++++|...++++++. + .+....++..+...+...|++++|...|+++++..
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence 344578999999999999999999999998764 1 12234456667777777777777777777765531
Q ss_pred --C-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCC
Q 039931 170 --P-RPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEG 246 (783)
Q Consensus 170 --~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g 246 (783)
. .....++..+...+...|++++|...++++. .++.......
T Consensus 146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-----------------------------------~~~~~~~~~~ 190 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL-----------------------------------EIYQTKLGPD 190 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------------------------------HHHHHTSCTT
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------------HHHHHHhCCC
Confidence 1 1122234444444444555555544444433 3332221111
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 247 LSPNVVVYNALLNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 247 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 279 (783)
......++..+...|.+.|++++|.+.|+++.+
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111345788899999999999999999999886
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=1.9e-10 Score=121.86 Aligned_cols=230 Identities=10% Similarity=-0.013 Sum_probs=142.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-----CHHHHH
Q 039931 397 LLVGLCKKGRLPEAWDLLCKMIEK----GFPI-NKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKI-FP-----DAVAFS 465 (783)
Q Consensus 397 li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p-----~~~~~~ 465 (783)
....+...|++++|...+++..+. +-++ ...++..+...|...|+++.|...+++..+... .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556677777777777776653 1111 234566677777777777777777766554210 01 134566
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 039931 466 AYINGLSKAGLVDEAYGVFLEMSRIGF-VPN----NFAYNSLIAGFCNRGKLNEALKLEREMRQ-----KGLLPDNFTFN 535 (783)
Q Consensus 466 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~~ 535 (783)
.+...|...|++++|.+.|++..+..- .++ ..++..+...|...|++++|.+.+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 677777777888888777777654210 011 23566777777788888888888777765 22122356677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC---CC-ChhHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 039931 536 IIINGFCKQGRMKPAIDAFMDMYRTGL---VP-DIVTYNTLIGGYCKALD---IVRADELVNKMYAGGLDPD-ITTYNIR 607 (783)
Q Consensus 536 ~li~~~~~~g~~~~A~~~~~~m~~~g~---~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 607 (783)
.+...|.+.|++++|...+++..+... .| ....+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 777778888888888888777664210 11 12234556666777777 66666666554 22333 3456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 039931 608 MHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~ 629 (783)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7778888888888888777764
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=2.9e-10 Score=123.60 Aligned_cols=210 Identities=10% Similarity=-0.058 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 039931 512 LNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRM-KPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVN 590 (783)
Q Consensus 512 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 590 (783)
++++...+++...... .+...+..+...+...|++ ++|.+.|++.++.. +.+...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666666555432 3667777777777788888 88888888877652 2246778888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh-h--------ccH
Q 039931 591 KMYAGGLDPDITTYNIRMHGYCNI---------RKMNQAAMMLDELVSAGIVPN-TVTYNTLMNGVC-C--------DIL 651 (783)
Q Consensus 591 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~-~--------~~~ 651 (783)
+..+ +.|+...+..+...|... |++++|+..+++.++. .|+ ...|..+...+. . +++
T Consensus 162 ~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8876 457777777778888887 8888888888887763 344 344555554443 2 678
Q ss_pred HHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHH
Q 039931 652 DRAIIIAAKLLKMAFVP----NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQE 727 (783)
Q Consensus 652 ~~A~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~ 727 (783)
++|+..++++++. .| +...|..+...|...|++++|++.++++.+++|+ +..++..++.++.. .++.+.+.+
T Consensus 238 ~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~-lg~~~eAi~ 313 (474)
T 4abn_A 238 QQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEF-LSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999998883 46 5678889999999999999999999999999987 78889898888765 344555554
Q ss_pred HHhc
Q 039931 728 TSEK 731 (783)
Q Consensus 728 ~~~~ 731 (783)
...+
T Consensus 314 ~~~~ 317 (474)
T 4abn_A 314 SKGK 317 (474)
T ss_dssp HTTT
T ss_pred Hhcc
Confidence 4444
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=2.8e-10 Score=120.49 Aligned_cols=300 Identities=11% Similarity=-0.015 Sum_probs=136.1
Q ss_pred HHhcCChhHHHHHHHHHHhC--CCCCC--HhHHHHHHHHH--HccCChhHHH-----------HHHHHHHhCCCCCcH--
Q 039931 261 YVKARDIDQANMLYEEMRSR--DIAPD--AVTFNIIVSGH--CKYGGMEDGD-----------RLLRDLSVSGLLPNC-- 321 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~~--~~~g~~~~A~-----------~~~~~~~~~~~~~~~-- 321 (783)
+.+.+++++|..+++++.+. .+..| ...|-.++..- ...++++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999998664 23223 33334443321 1122223333 444443321100000
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C----
Q 039931 322 --TLYDITVAGLCWAGRLDEAMEFFEDMFEK----GISP-SIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLT-P---- 389 (783)
Q Consensus 322 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p---- 389 (783)
..+......+...|++++|...|++..+. +-.+ ...++..+...|...|++++|+..+++..+.-.. +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 00111233444556666666666555442 0011 1234555555555555555555555554432000 0
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 039931 390 -SSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFP-DAVAFSAY 467 (783)
Q Consensus 390 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 467 (783)
...++..+...|...|++++|...+++..+... +.+..+ ...++..+
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE-------------------------------AEKQPQLMGRTLYNI 230 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-------------------------------HcCChHHHHHHHHHH
Confidence 112344444444445555555544444433200 000000 11244445
Q ss_pred HHHHHccCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 039931 468 INGLSKAGLVDEAYGVFLEMSRI----GF-VPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK----GLLPDNFTFNIII 538 (783)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~~~~~li 538 (783)
...|...|++++|.+.+++..+. +. +....++..+...+.+.|++++|...+++..+. +-......+..+.
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555554431 11 222344555555555555555555555554432 1111122234455
Q ss_pred HHHHhcCC---hHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 539 NGFCKQGR---MKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 539 ~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
..+...|+ +++|+.++++. +..| ....+..+...|...|++++|.+.+++..+
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555665 55555555544 2222 233455566666666666666666666554
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=1.2e-10 Score=126.74 Aligned_cols=192 Identities=13% Similarity=-0.031 Sum_probs=100.8
Q ss_pred CHhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039931 425 NKVAFTVLLDGYFRIGDL-IGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLI 503 (783)
Q Consensus 425 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 503 (783)
+...+..+...+...|++ ++|++.|++..+..+. +...|..+...|.+.|++++|.+.|++..+. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 444455555555555555 5555555555443322 3445555555555555555555555555543 24444555555
Q ss_pred HHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCC--
Q 039931 504 AGFCNR---------GKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQ--------GRMKPAIDAFMDMYRTGLVP-- 564 (783)
Q Consensus 504 ~~~~~~---------g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p-- 564 (783)
..+... |++++|...+++..+..+. +...|..+...|... |++++|+..|++.++. .|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCc
Confidence 555555 5555555555555554322 445555555555555 5566666666655553 23
Q ss_pred --ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 039931 565 --DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMML 624 (783)
Q Consensus 565 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 624 (783)
+...|..+...|...|++++|.+.|++..+. .| +...+..+..++...|++++|++.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555556666666666666666655552 23 3344555555555555555555443
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.24 E-value=2.9e-09 Score=112.10 Aligned_cols=231 Identities=11% Similarity=0.018 Sum_probs=117.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC----HHhHHHHHHHHH
Q 039931 150 LRVGDYGSVWKLFRDMIHLGPRPSNY----TFNALILGFCRNGCIRIGESLLHVMHKYMC-VAD----FFAYNILINAYC 220 (783)
Q Consensus 150 ~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~ 220 (783)
...|++++|...+++.+...+..+.. +++.+...+...|++++|...+++..+... ..+ ..++..+...+.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34444444444444444433222211 334444445555555555555555433110 011 123455566666
Q ss_pred hcCCcchHhhhccchHHHHHHHHHCCCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--CHhHHHHHH
Q 039931 221 IRGQTSYALGKCGAGRMIFDMIQEEGLS--P-NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIA--P--DAVTFNIIV 293 (783)
Q Consensus 221 ~~g~~~~A~~~~~~a~~~~~~m~~~g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 293 (783)
..|++++|+..++++..+... .+.. | ...++..+...+...|++++|...+++....... + ...++..+.
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINE---QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH---TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHH---hccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 777777775544444433332 2221 2 2346677888899999999999999998764221 1 123455566
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCc--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 039931 294 SGHCKYGGMEDGDRLLRDLSVSGLLPN--CTLYD----ITVAGLCWAGRLDEAMEFFEDMFEKGISPS---IFAFNSIIA 364 (783)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~ 364 (783)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......++ ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 666677777777777766654311111 11111 122234566666666666665554322111 123344455
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 039931 365 AYSRAGLEENAFEAYKIMH 383 (783)
Q Consensus 365 ~~~~~g~~~~A~~~~~~m~ 383 (783)
.+...|++++|...++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555543
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=3.4e-09 Score=111.60 Aligned_cols=276 Identities=10% Similarity=-0.002 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CC----HHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSES----AITILFKSLLRVGDYGSVWKLFRDMIHLGPR-PS----NYT 176 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~-~~----~~~ 176 (783)
+...+...+...|++++|...+++.+......+.. +++.+...+...|++++|...+++.....+. .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44555667778999999999999988865333332 4667778888999999999999998764221 12 234
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhC----CCC--C-CHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC
Q 039931 177 FNALILGFCRNGCIRIGESLLHVMHKY----MCV--A-DFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP 249 (783)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p 249 (783)
++.+...+...|++++|...+++..+. +.. | ...++..+...+...|++++|...++++..+. ...|...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~ 172 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL---SSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TTSCGGG
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hccCcHH
Confidence 677888899999999999999987653 211 2 24567778888999999999954433332221 1222211
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-hHHH-----HHHHHHHccCChhHHHHHHHHHHhCCCCC---c
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDA-VTFN-----IIVSGHCKYGGMEDGDRLLRDLSVSGLLP---N 320 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~ 320 (783)
...++..+...+...|++++|...+++.......++. ..+. ..+..+...|+.++|...++........+ .
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 2457888889999999999999999998754212111 1222 23344778999999999999987654322 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039931 321 CTLYDITVAGLCWAGRLDEAMEFFEDMFEK----GISPSI-FAFNSIIAAYSRAGLEENAFEAYKIMHQ 384 (783)
Q Consensus 321 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (783)
...+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 234667788899999999999999987653 211122 2556667777788888888887777654
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=4.4e-09 Score=102.05 Aligned_cols=206 Identities=10% Similarity=-0.057 Sum_probs=135.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 039931 495 NNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-DIVTYNTLI 573 (783)
Q Consensus 495 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li 573 (783)
|+..+......+...|++++|...|++..+....++...+..+...+...|++++|+..|++.++. .| +...|..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 455666666667777777777777777766554346666666777777777777777777777764 34 455677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--H-HHHHHH
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDP-DI-------TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN--T-VTYNTL 642 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~-~~~~~l 642 (783)
..|...|++++|++.+++..+. .| +. ..|..+...+...|++++|++.|++.++ +.|+ . ..|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHH
Confidence 7777777777777777777762 34 33 3467777788888888888888888776 3565 3 233333
Q ss_pred HHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 039931 643 MNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRA 714 (783)
Q Consensus 643 i~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 714 (783)
...+ ...+...++++...+ ..+...|.... ....|.+++|+.+++++.++.|+ +..+...+..+
T Consensus 160 ~~~~----~~~~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLF----YNNGADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQV 223 (228)
T ss_dssp HHHH----HHHHHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 3222 233444455555532 22334444443 34567789999999999999987 77777666655
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=2.5e-09 Score=112.93 Aligned_cols=312 Identities=11% Similarity=0.013 Sum_probs=138.5
Q ss_pred CCChHHHHHHHHHH--HhcCChhHHHHHHHHHHhC--CCC--CCHhHHHHHHHH--HHccCChhHHH---------HHHH
Q 039931 248 SPNVVVYNALLNGY--VKARDIDQANMLYEEMRSR--DIA--PDAVTFNIIVSG--HCKYGGMEDGD---------RLLR 310 (783)
Q Consensus 248 ~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~--p~~~t~~~ll~~--~~~~g~~~~A~---------~~~~ 310 (783)
.|+..+-+.|-..| .+.+++++|.++++++.+. .+. ++...|-.++.. ....+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35555666666676 7899999999999987653 222 223334444432 11112222222 4444
Q ss_pred HHHhCCCCCcH--H--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039931 311 DLSVSGLLPNC--T--LYDITVAGLCWAGRLDEAMEFFEDMFEKGI-SP----SIFAFNSIIAAYSRAGLEENAFEAYKI 381 (783)
Q Consensus 311 ~~~~~~~~~~~--~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (783)
.+.......+. . .+......+...|++++|...|++..+... .+ ...++..+...|...|++++|+..+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 43221111010 0 111222334455666666666666554210 01 133455555555566666666555555
Q ss_pred HHhCC--C---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 039931 382 MHQFG--L---TP-SSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRR 455 (783)
Q Consensus 382 m~~~~--~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 455 (783)
..+.. . .+ ...+++.+...|...|++++|.+.+++..+... +.
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-------------------------------~~ 215 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM-------------------------------DI 215 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HT
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------------------------------Hc
Confidence 44310 0 00 122344445555555555555555554443200 00
Q ss_pred CCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 039931 456 KIF-PDAVAFSAYINGLSKAGLVDEAYGVFLEMSR-----IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKG--- 526 (783)
Q Consensus 456 ~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--- 526 (783)
+.. ....++..+...|...|++++|.+.|++..+ .. +....++..+...+.+.|++++|...+++..+..
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 000 0122344444444445555555544444433 21 1123344455555555555555555555544321
Q ss_pred -CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 527 -LLPDNFTFNIIINGFCKQGR---MKPAIDAFMDMYRTGLVPD-IVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 527 -~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.......+..+...+...|+ +.+|+..+++. +..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11112233333344444444 44444444431 11221 23444555555666666666666555543
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=1.4e-09 Score=114.87 Aligned_cols=228 Identities=9% Similarity=-0.047 Sum_probs=138.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC--C---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CC-CHHHHHH
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGF--P---INKVAFTVLLDGYFRIGDLIGAQSLWNELNRR----KI-FP-DAVAFSA 466 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p-~~~~~~~ 466 (783)
...+...|++++|+..+++..+... . ....++..+...|...|+++.|...+++..+. +. .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445567777777777777665311 1 12345666777777777777777777665542 10 11 1345666
Q ss_pred HHHHHHccCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 039931 467 YINGLSKAGLVDEAYGVFLEMSRI----GFVP-NNFAYNSLIAGFCNRGKLNEALKLEREMRQ-----KGLLPDNFTFNI 536 (783)
Q Consensus 467 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~p~~~~~~~ 536 (783)
+...|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...+++..+ .... ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 777777777777777777776542 1111 123566677777777888888877777765 3322 3566677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC---CCC-hhHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 039931 537 IINGFCKQGRMKPAIDAFMDMYRTGL---VPD-IVTYNTLIGGYCKALD---IVRADELVNKMYAGGLDPD-ITTYNIRM 608 (783)
Q Consensus 537 li~~~~~~g~~~~A~~~~~~m~~~g~---~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~li 608 (783)
+...+.+.|++++|...+++..+..- .|. ...+..+...|...++ +.+|+..+++. +..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 77777777888888877777765311 111 2334455555556666 56666665542 22332 24455667
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 039931 609 HGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~m~~ 629 (783)
..|...|++++|...|++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777776653
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=1.2e-09 Score=123.69 Aligned_cols=169 Identities=12% Similarity=-0.022 Sum_probs=142.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
.|.++.+++.|...|.+.|++++|+..|+++++.. +.+..+++.|...|.+.|++++|++.|++.++..| .+..+|+.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 35567889999999999999999999999999886 56688899999999999999999999999999876 57888999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHH
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLN 259 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 259 (783)
+..++...|++++|++.|++.++.. +.+..+|+.+...|.+.|++++|+ ..+++..+.... +..+|..+..
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi-------~~~~~Al~l~P~-~~~a~~~L~~ 153 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAI-------ASYRTALKLKPD-FPDAYCNLAH 153 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHHHCSC-CHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH-------HHHHHHHHhCCC-ChHHHhhhhh
Confidence 9999999999999999999998765 456788899999999999999884 455555554322 5778888999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 039931 260 GYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 260 ~~~~~g~~~~A~~~~~~m~~ 279 (783)
.|...|++++|.+.+++..+
T Consensus 154 ~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 154 CLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 99999999999888888765
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=3.5e-10 Score=113.65 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=120.3
Q ss_pred HhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHhHHHHH
Q 039931 220 CIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR------DIAP-DAVTFNII 292 (783)
Q Consensus 220 ~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~l 292 (783)
...|++++|+..+++|.+++........+....++..+...|...|++++|+..|++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3568888888888888888888775433345678999999999999999999999998764 1122 34567788
Q ss_pred HHHHHccCChhHHHHHHHHHHhC------C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 039931 293 VSGHCKYGGMEDGDRLLRDLSVS------G-LLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEK------GISP-SIFA 358 (783)
Q Consensus 293 l~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~ 358 (783)
...+...|++++|.+.++++... . .......+..+...|...|++++|...|++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888899999998888887654 1 1223556777777788888888888888877664 1122 3456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 039931 359 FNSIIAAYSRAGLEENAFEAYKIMHQ 384 (783)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~m~~ 384 (783)
+..+...|...|++++|...+++..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777777777787777777777654
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.15 E-value=2.6e-09 Score=99.41 Aligned_cols=165 Identities=12% Similarity=-0.019 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+..+ .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 467778888888888888888888887765 45677788888888888888888888888887754 5677788888888
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 039931 185 CRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKA 264 (783)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 264 (783)
...|++++|...++++.+.. +.+...+..+...+...|++++| ...+++..+... .+..++..+...+.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A-------~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEA-------IDSFKIALGLRP-NEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHH-------HHHHHHHHhcCc-cchHHHHHHHHHHHHc
Confidence 88888888888888877654 45566777777777777777777 345555544322 2556677777777777
Q ss_pred CChhHHHHHHHHHHhC
Q 039931 265 RDIDQANMLYEEMRSR 280 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~ 280 (783)
|++++|.+.+++..+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 7777777777776653
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.14 E-value=4.2e-09 Score=97.99 Aligned_cols=163 Identities=7% Similarity=-0.041 Sum_probs=95.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFC 542 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 542 (783)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34444555555566666666665555432 23445555555666666666666666666555432 24555666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039931 543 KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAM 622 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 622 (783)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666542 2345566666666666666666666666666532 2345566666666666666666666
Q ss_pred HHHHHHH
Q 039931 623 MLDELVS 629 (783)
Q Consensus 623 ~~~~m~~ 629 (783)
.+++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=6e-10 Score=111.96 Aligned_cols=164 Identities=15% Similarity=0.086 Sum_probs=116.3
Q ss_pred cCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CC-CCCHHHHHHHHH
Q 039931 117 VEMSAEVMEILYRMRE-------VGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL------GP-RPSNYTFNALIL 182 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~-------~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~ 182 (783)
.|++++|+..|++.++ .+.+....++..+...+...|++++|+..|+++++. +. +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4445555555544433 232334567788888888888888888888888764 11 233457888888
Q ss_pred HHHhcCChhhHHHHHHHHHhC------C-CCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKY------M-CVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYN 255 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~ 255 (783)
.+...|++++|...+++..+. . .+....++..+...|...|++++|+..++++.+++........+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 899999999999988887754 1 123456788888899999999999766666666555442221222456888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 039931 256 ALLNGYVKARDIDQANMLYEEMRSR 280 (783)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~m~~~ 280 (783)
.+...|.+.|++++|...|++..+.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998763
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=1.3e-08 Score=98.64 Aligned_cols=199 Identities=13% Similarity=0.036 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 460 DAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIIN 539 (783)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 539 (783)
|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|++.+++..+..+. +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 455666666667777777777777777666542256666666777777777777777777777766433 5566777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-Ch-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 039931 540 GFCKQGRMKPAIDAFMDMYRTGLVP-DI-------VTYNTLIGGYCKALDIVRADELVNKMYAGGLDPD---ITTYNIRM 608 (783)
Q Consensus 540 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li 608 (783)
.|...|++++|...+++.++. .| +. ..|..+...+...|++++|++.+++.++ +.|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 777777777777777777764 34 33 3466777777788888888888888876 3565 35666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHH
Q 039931 609 HGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVT 672 (783)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 672 (783)
.+|...| ...++++...+ ..+...|..... ...+.+++|+..+++.++ +.|+...
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~--l~p~~~~ 215 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA-KADAAFKKAVDYLGEAVT--LSPNRTE 215 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH-HHHHHHHHHHHHHHHHhh--cCCCCHH
Confidence 7775544 33344444322 123334433332 123678889999988888 4565543
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.05 E-value=7.9e-09 Score=116.93 Aligned_cols=162 Identities=12% Similarity=0.002 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039931 322 TLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGL 401 (783)
Q Consensus 322 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 401 (783)
..++.|...|.+.|++++|++.|++.++..+. +..+|+.+...|.+.|++++|++.|++..+.+. -+...|..+...+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 34444555555555555555555555544322 344555555555555555555555555554321 1344455555555
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 039931 402 CKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 481 (783)
...|++++|++.|++.++.... +...++.+...|.+.|++++|++.|++..+..+. +...+..+...+...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555555554322 4445555555555555555555555555554332 3445555555555555555555
Q ss_pred HHHHHH
Q 039931 482 GVFLEM 487 (783)
Q Consensus 482 ~~~~~m 487 (783)
+.+++.
T Consensus 166 ~~~~ka 171 (723)
T 4gyw_A 166 ERMKKL 171 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=1.9e-08 Score=101.69 Aligned_cols=204 Identities=11% Similarity=-0.119 Sum_probs=120.1
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 039931 540 GFCKQGRMKPAIDAFMDMYRT----GLVPD-IVTYNTLIGGYCKALDIVRADELVNKMYAG----GLDP-DITTYNIRMH 609 (783)
Q Consensus 540 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~ 609 (783)
.|...|++++|...|.+..+. |-+++ ..+|+.+...|.+.|++++|+..+++.++. |-.+ -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777777666665532 21111 346666777777777777777777666551 1000 1345777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCCH------HHHHHH
Q 039931 610 GYCNI-RKMNQAAMMLDELVSAGI-VPN----TVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPNV------VTTNVL 676 (783)
Q Consensus 610 ~~~~~-g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~~------~~~~~l 676 (783)
.|... |++++|+..|++.++... ..+ ..++..+...+.. |++++|+..++++++....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 78775 888888888887765210 011 1234455444444 7888888888887773211111 145666
Q ss_pred HHHHHhcCChhhHHHHHHHHhhcCCCCCHH----HHHHHHHHHhh-hhHHHHHHHHHHhcCCCcchhhhHHH
Q 039931 677 LSHFCKQGMPEKTLLWGQKLSEISFDFDET----SYKIMDRAYHN-IQENAEFFQETSEKSLFLDFLMGCMT 743 (783)
Q Consensus 677 l~~~~~~g~~~~A~~~~~~~~~~~~~~d~~----~~~~l~~~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (783)
...+...|++++|+..+++++++.|..... .+..++.+|.. -.+.++.+.+.+++++.++|....++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 667888899999999999998888762221 23444555432 13556777777788888887654443
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=2.1e-07 Score=92.05 Aligned_cols=178 Identities=11% Similarity=-0.013 Sum_probs=99.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 445 AQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGF-VPNNFAYNSLIAGFCNRGKLNEALKLEREMR 523 (783)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 523 (783)
|+..|++....+ .++..++..+...+...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555565555443 23444445566666666777777777766655432 1234455566666677777777777777766
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 524 QKGLLP-----DNFTFNIIING--FCKQG--RMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 524 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 23444444444 22223 677777777776553 34433333444466677777777777765543
Q ss_pred C-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 595 G-----GL---DP-DITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 595 ~-----g~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
. .. .| |..+...+|......|+ +|.++++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 1 00 13 44555455555555565 66677777765
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=1.2e-06 Score=95.04 Aligned_cols=388 Identities=12% Similarity=-0.007 Sum_probs=195.4
Q ss_pred cC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhh
Q 039931 152 VG-DYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALG 230 (783)
Q Consensus 152 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 230 (783)
.| +++.|..+|+.++..-| . |+++.+..+|++.+.. .|++..|...+....+.+...+
T Consensus 7 ~~~~i~~aR~vyer~l~~~P--~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~--- 65 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYM--S--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKF--- 65 (493)
T ss_dssp -----CCHHHHHHHHHHHHH--T--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-------
T ss_pred cCcchHHHHHHHHHHHHHCC--C--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHH---
Confidence 45 36667777777665422 2 6677777777777764 3677777777776666553211
Q ss_pred hccchHHHHHHHHHC-CCCC-ChHHHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc---cCC
Q 039931 231 KCGAGRMIFDMIQEE-GLSP-NVVVYNALLNGYV----KARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCK---YGG 301 (783)
Q Consensus 231 ~~~~a~~~~~~m~~~-g~~p-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~g~ 301 (783)
..+.+|+..... |..| +...|...+..+. ..++.+.+.++|++.+.. ++. .+..+-..|.. ..+
T Consensus 66 ---~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~ 138 (493)
T 2uy1_A 66 ---KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELN 138 (493)
T ss_dssp ---CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhc
Confidence 125667766543 4333 6677888877654 346788899999999874 211 11222221111 111
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--C-----HHH
Q 039931 302 MEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAG--L-----EEN 374 (783)
Q Consensus 302 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~-----~~~ 374 (783)
...+..+..+. .+.+..|..+++.+...-...+...|...+.--...+ - .+.
T Consensus 139 ~~~~~~~~~~~---------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~R 197 (493)
T 2uy1_A 139 KITGKKIVGDT---------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESR 197 (493)
T ss_dssp HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred cccHHHHHHHH---------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHH
Confidence 11222222111 1123334444443332100012223433333211110 0 223
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 375 AFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 375 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
+..+|+++.... +.+...|...+..+.+.|+++.|..++++.+.. +.+...+.. |....+.++ +++.+.+
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~---~~~~l~~ 267 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEA---VYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTH---HHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhH---HHHHHHH
Confidence 444555555432 223445555555555555666666666655555 222222111 111111111 0111110
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 455 RKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTF 534 (783)
Q Consensus 455 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 534 (783)
.+.. ...+.+ .. .. .......|...+....+.+..+.|..+|+.. +. ...+...|
T Consensus 268 ---------------~~~~-~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~ 322 (493)
T 2uy1_A 268 ---------------KYSM-GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVF 322 (493)
T ss_dssp ---------------HTC-----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHH
T ss_pred ---------------HHHh-hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHH
Confidence 0000 000000 00 00 0011244556666666677788888888888 32 22344445
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 039931 535 NIIINGFCKQG-RMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCN 613 (783)
Q Consensus 535 ~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 613 (783)
...+..-...+ +.+.|..+|+..++.. +-+...|...++...+.|+.+.|..+|+++. .....|...+..-..
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 43333322333 6888999999888752 2234556667777778899999999998873 256778888877778
Q ss_pred cCCHHHHHHHHHHHHH
Q 039931 614 IRKMNQAAMMLDELVS 629 (783)
Q Consensus 614 ~g~~~~A~~~~~~m~~ 629 (783)
.|+.+.+..+++++.+
T Consensus 397 ~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 397 VGSMELFRELVDQKMD 412 (493)
T ss_dssp HSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999999888888763
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=2.3e-07 Score=91.80 Aligned_cols=186 Identities=10% Similarity=-0.001 Sum_probs=121.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039931 515 ALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLV-PDIVTYNTLIGGYCKALDIVRADELVNKMY 593 (783)
Q Consensus 515 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 593 (783)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..|-. -+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566777766654 345555567777888888888888888887665421 245677777888888888888888888887
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-hccHHHHHHHHHHHHH
Q 039931 594 AGGLDP-----DITTYNIRMHG--YCNIR--KMNQAAMMLDELVSAGIVPNTVTYNTLMNGVC-CDILDRAIIIAAKLLK 663 (783)
Q Consensus 594 ~~g~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~~~~A~~~~~~~~~ 663 (783)
+ ..| +..+...|..+ ....| ++++|..+|+++.+. .|+..+-..++.++. .|++++|.+.++.+.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 356 24555555544 33334 888888888887653 355222222222222 2788888888876654
Q ss_pred c-----CC---CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHH
Q 039931 664 M-----AF---VPN-VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSY 708 (783)
Q Consensus 664 ~-----~~---~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 708 (783)
. .- .|+ ..+...++......|+ +|.++++++.+..|+ ++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~-hp~i~ 290 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE-HAFIK 290 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC-CHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC-ChHHH
Confidence 2 00 243 3555456555566776 888999999999976 55443
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=4.1e-08 Score=99.18 Aligned_cols=199 Identities=8% Similarity=-0.066 Sum_probs=122.1
Q ss_pred HHHhcCChhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC-CHHhHHHHHH
Q 039931 148 SLLRVGDYGSVWKLFRDMIHL----GPRPS-NYTFNALILGFCRNGCIRIGESLLHVMHKY----MCVA-DFFAYNILIN 217 (783)
Q Consensus 148 ~l~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~ 217 (783)
.|...|++++|.+.|.+.+.. |..++ ..+|+.+..+|...|++++|+..+++..+. |-.. -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355566677776666666553 11111 346677777777777777777777766542 1000 1356778888
Q ss_pred HHHhc-CCcchHhhhccchHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh------HH
Q 039931 218 AYCIR-GQTSYALGKCGAGRMIFDMIQEEGLSPN-VVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAV------TF 289 (783)
Q Consensus 218 ~~~~~-g~~~~A~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~ 289 (783)
.|... |++++|+..+++|.+++.. .+-.+. ..+++.+...|.+.|++++|+..|++..+........ +|
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 88886 9999998777666665543 111111 3568889999999999999999999998864432221 45
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCC-c---HHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 039931 290 NIIVSGHCKYGGMEDGDRLLRDLSVSGLLP-N---CTLYDITVAGLC--WAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 290 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~---~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 349 (783)
..+..++...|++++|...+++..+..... + ...+..++..+. ..+++++|+..|+++..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 666667777888888888888776643221 1 112233333333 23446666666555443
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.87 E-value=5.9e-08 Score=92.45 Aligned_cols=176 Identities=7% Similarity=0.031 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHhcCChhHHHHHHHHHHhcC
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITI----------------LFKSLLRVGDYGSVWKLFRDMIHLG 169 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~----------------ll~~l~~~g~~~~A~~~~~~~~~~~ 169 (783)
.+-.....+.+.|++++|+..|+++++.+ +.+...|.. +...+.+.|++++|+..|++.++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 44455667788999999999999998875 334556666 8888999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC
Q 039931 170 PRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP 249 (783)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p 249 (783)
| .+...+..+...+...|++++|...|++.++.. +.+..++..+...|...|+.+.+ .+...+..... ..|
T Consensus 85 p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~-----~~~~~~~~~~~--~~~ 155 (208)
T 3urz_A 85 P-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK-----KLETDYKKLSS--PTK 155 (208)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH-----HHHHHHC---C--CCH
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHhC--CCc
Confidence 6 677888889999999999999999999988765 45677888888887665543322 11233333322 122
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIV 293 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 293 (783)
....+..+..++...|++++|+..|++.++. .|+......+.
T Consensus 156 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 156 MQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 2334444555666778888888888888765 56655444433
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.86 E-value=1.1e-07 Score=82.77 Aligned_cols=128 Identities=15% Similarity=0.159 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK 578 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 578 (783)
+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 445555566666666666666666554322 45556666666666666666666666666542 2345556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 579 ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 579 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666777766666666532 22455666666667777777777777766654
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.86 E-value=3.5e-06 Score=91.27 Aligned_cols=355 Identities=7% Similarity=-0.066 Sum_probs=186.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC-hhHHHHHHHHHHhC-CCC-CcHHHHHHHHHHHH----hcCCH
Q 039931 265 RDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG-MEDGDRLLRDLSVS-GLL-PNCTLYDITVAGLC----WAGRL 337 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~A~~~~~~~~~~-~~~-~~~~~~~~li~~~~----~~g~~ 337 (783)
|+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+.++.. |.. .+...|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6788888888887764 4677777777776666553 34566667666543 432 35566666665433 23567
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 039931 338 DEAMEFFEDMFEKGISPSI-FAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCK 416 (783)
Q Consensus 338 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 416 (783)
+.+..+|++.+..... +. ..|..... +.+..+...+.+++.+.. +.+..|..+++.
T Consensus 106 ~~vR~iy~rAL~~P~~-~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~ 162 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMG-SLSELWKDFEN-FELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHHTSCCT-THHHHHHHHHH-HHHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhh-hHHHHHHHHHH-HHHHhccccHHHHHHHHh---------------------HHHHHHHHHHHH
Confidence 7788888888763111 11 11111111 111111111221111110 112222222222
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 039931 417 MIEKGFPINKVAFTVLLDGYFRIG-------DLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 417 ~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 489 (783)
+...-...+...|...+..-...+ ..+.+..+|+++....+. +...|...+..+.+.|+.++|..++++...
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221100012233433333322110 023345566666554322 456666666666666777777777777666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------C---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 490 IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK---------G---LLPDNFTFNIIINGFCKQGRMKPAIDAFMDM 557 (783)
Q Consensus 490 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 557 (783)
. +.+...+. .|....+.++. ++.+.+. + .......|...+....+.+..+.|..+|+.+
T Consensus 242 ~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 242 M--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp H--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 5 22222222 12221111111 1111111 0 0112356777777777888999999999999
Q ss_pred HHcCCCCChhHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039931 558 YRTGLVPDIVTYNTLIGGYCK-ALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT 636 (783)
Q Consensus 558 ~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 636 (783)
+.. ..+...|......-.. .++.+.|..+|+...+. .+-+...+...++...+.|+.+.|..+|+++. ...
T Consensus 313 -~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~ 384 (493)
T 2uy1_A 313 -GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTS 384 (493)
T ss_dssp -TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBH
T ss_pred -hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHH
Confidence 321 1233444332222222 34699999999999884 22245566777888889999999999999972 245
Q ss_pred HHHHHHHHHHhh-ccHHHHHHHHHHHH
Q 039931 637 VTYNTLMNGVCC-DILDRAIIIAAKLL 662 (783)
Q Consensus 637 ~~~~~li~~~~~-~~~~~A~~~~~~~~ 662 (783)
..|...+.--.. |..+.+.++++++.
T Consensus 385 ~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 385 RMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666653222 78888888887755
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.85 E-value=1e-07 Score=83.05 Aligned_cols=129 Identities=19% Similarity=0.162 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFC 185 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (783)
.+..+...|...|++++|..+|+++.+.+ +.+...+..+...+...|++++|...|+++...++ .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 57788899999999999999999998876 45778899999999999999999999999998865 56778889999999
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHH
Q 039931 186 RNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
..|++++|...++++.+.. +.+..++..+...+.+.|++++| ...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A-------~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEA-------IEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH-------HHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHH-------HHHHHHHHc
Confidence 9999999999999998765 45678889999999999999999 566666654
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.85 E-value=2e-06 Score=86.06 Aligned_cols=221 Identities=9% Similarity=-0.037 Sum_probs=152.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhc---
Q 039931 117 VEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG--DYGSVWKLFRDMIHLGPRPSNYTFNALILGF----CRN--- 187 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 187 (783)
....++|+..++.++..+ +.+..+||.-...+...| +++++++.++.++...| .+..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcccc
Confidence 334468888888888876 456677888888888888 88888888888888776 4555666665555 555
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcc--hHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 039931 188 GCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTS--YALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKAR 265 (783)
Q Consensus 188 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 265 (783)
+++++++.+++++.+.. +.|..+|+--.-.+.+.|..+ ++ ...++.+.+..+. |-.+|+.....+.+.+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~E-------L~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKE-------LSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHH-------HHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHH-------HHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 67888888888888765 567778877777777777776 66 4567777765544 7788888777777766
Q ss_pred C------hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhH-HHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCC
Q 039931 266 D------IDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMED-GDRLLRDLSVSG--LLPNCTLYDITVAGLCWAGR 336 (783)
Q Consensus 266 ~------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~ 336 (783)
+ ++++++.+++++...+. |...|+.+-..+.+.|+... ...+..++...+ -..+...+..+...|.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 6 78888888888877554 77777777777767666433 444555544322 12244555556666666666
Q ss_pred HHHHHHHHHHHHH
Q 039931 337 LDEAMEFFEDMFE 349 (783)
Q Consensus 337 ~~~A~~~~~~m~~ 349 (783)
.++|.++++.+.+
T Consensus 274 ~~~A~~~~~~l~~ 286 (306)
T 3dra_A 274 YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666654
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.82 E-value=1.2e-07 Score=94.05 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 039931 392 CTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPIN---KVAFTVLLDGYFRIGDLIGAQSLWNELNR 454 (783)
Q Consensus 392 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 454 (783)
..+..+...+.+.|++++|+..|+++++.... + ...+..+..++.+.|++++|+..|++..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33444444444555555555555555444221 2 33444444444445555555555544444
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.81 E-value=1.2e-07 Score=93.89 Aligned_cols=171 Identities=10% Similarity=0.031 Sum_probs=136.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CC-HH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS---ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPR-PS-NY 175 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~-~~-~~ 175 (783)
+.++..+-.+...+.+.|++++|...|+++++.. +.+ ..++..+...+.+.|++++|+..|++.++..|. |. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4567788889999999999999999999999875 334 678889999999999999999999999998653 22 45
Q ss_pred HHHHHHHHHHh--------cCChhhHHHHHHHHHhCCCCCCHHhH-----------------HHHHHHHHhcCCcchHhh
Q 039931 176 TFNALILGFCR--------NGCIRIGESLLHVMHKYMCVADFFAY-----------------NILINAYCIRGQTSYALG 230 (783)
Q Consensus 176 ~~~~l~~~~~~--------~g~~~~A~~~~~~m~~~g~~~~~~~~-----------------~~li~~~~~~g~~~~A~~ 230 (783)
++..+..++.. .|++++|...|+++.+.. +.+.... ..+...|.+.|++++|
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-- 167 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA-- 167 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH--
Confidence 67788888888 999999999999998764 2233333 4567888999999999
Q ss_pred hccchHHHHHHHHHCCCCC--ChHHHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 039931 231 KCGAGRMIFDMIQEEGLSP--NVVVYNALLNGYVKA----------RDIDQANMLYEEMRSR 280 (783)
Q Consensus 231 ~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 280 (783)
...++...+..... ....+..+...|.+. |++++|...|+++.+.
T Consensus 168 -----~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 168 -----AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp -----HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 46677666543221 235677788888866 8889999999999886
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=1.8e-07 Score=89.11 Aligned_cols=135 Identities=13% Similarity=0.054 Sum_probs=77.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcC
Q 039931 502 LIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKAL 580 (783)
Q Consensus 502 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g 580 (783)
+...+.+.|++++|...|++..+..+. +...+..+...+...|++++|...|++.++. .| +..+|..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 556666667777777777766665433 5666666667777777777777777776664 34 4556666666665443
Q ss_pred C--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039931 581 D--IVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLM 643 (783)
Q Consensus 581 ~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 643 (783)
+ .+.+...++.... ..|....+..+..++...|++++|+..|++.++ +.|+......+.
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 3 3334444444432 122223344445556666777777777777664 456655444443
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.79 E-value=3.1e-06 Score=84.70 Aligned_cols=223 Identities=9% Similarity=-0.023 Sum_probs=138.3
Q ss_pred HHhcCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH----Hh
Q 039931 149 LLRVGDY-GSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG--CIRIGESLLHVMHKYMCVADFFAYNILINAY----CI 221 (783)
Q Consensus 149 l~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~ 221 (783)
..+.|.+ ++|+..++.++..+| .+...|+.-...+...| ++++++..++.++... +.+..+|+.-...+ .+
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 3344444 689999999999876 67778999999999999 9999999999998865 44556666555555 44
Q ss_pred c---CCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 039931 222 R---GQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDID--QANMLYEEMRSRDIAPDAVTFNIIVSGH 296 (783)
Q Consensus 222 ~---g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 296 (783)
. ++.+++ ..+++.+.+...+ |-.+|+.-.-.+.+.|+++ ++++.++++.+.++. |...|+.-...+
T Consensus 120 l~~~~~~~~E-------L~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll 190 (306)
T 3dra_A 120 NNNDFDPYRE-------FDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLL 190 (306)
T ss_dssp TTTCCCTHHH-------HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred ccccCCHHHH-------HHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4 566666 4566777665433 7788888888888888887 888888888887655 666776665555
Q ss_pred HccCC------hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCC--CCCCHHHHHHHHHHHH
Q 039931 297 CKYGG------MEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLD-EAMEFFEDMFEKG--ISPSIFAFNSIIAAYS 367 (783)
Q Consensus 297 ~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g--~~p~~~~~~~li~~~~ 367 (783)
...+. ++++.+.++.++...+. |...|+-+-..+.+.|+.. ++..+.+++.+.+ -..+...+..+...|.
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred HhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 55444 44455555544444322 4444444444444444422 2333333333221 0113444444444444
Q ss_pred HcCCHHHHHHHHHHHH
Q 039931 368 RAGLEENAFEAYKIMH 383 (783)
Q Consensus 368 ~~g~~~~A~~~~~~m~ 383 (783)
+.|+.++|.++++.+.
T Consensus 270 ~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 270 QQKKYNESRTVYDLLK 285 (306)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH
Confidence 4445555555554444
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.78 E-value=9.9e-08 Score=108.52 Aligned_cols=174 Identities=9% Similarity=-0.074 Sum_probs=133.7
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039931 115 LRVEMSAEVMEILYRMR--------EVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (783)
...|++++|++.+++++ +.. +.+...+..+...+...|++++|+..|+++++.++ .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67889999999999988 544 45677888889999999999999999999998766 677888889999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 039931 187 NGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARD 266 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 266 (783)
.|++++|...|++..+.. +.+...+..+...|.+.|++++ +.. +++..+... .+..+|..+...+.+.|+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~-------~~~al~~~P-~~~~a~~~lg~~~~~~g~ 549 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKF-------YQTVWSTND-GVISAAFGLARARSAEGD 549 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCH-------HHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHH-------HHHHHHhCC-chHHHHHHHHHHHHHcCC
Confidence 999999999999988765 4467788888888999999888 753 344333322 266788888999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 039931 267 IDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG 301 (783)
Q Consensus 267 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 301 (783)
+++|++.|++..+.+.. +...+..+..++...++
T Consensus 550 ~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 550 RVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 99999999988775322 34566666666655444
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=1e-07 Score=108.47 Aligned_cols=167 Identities=7% Similarity=-0.134 Sum_probs=86.8
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 039931 507 CNRGKLNEALKLEREMR--------QKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK 578 (783)
Q Consensus 507 ~~~g~~~~A~~l~~~m~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 578 (783)
...|++++|++.+++.. +... .+...+..+...+.+.|++++|...|+++++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45566666666666665 3221 244555555666666666666666666666532 2245556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhh-ccHHHHH
Q 039931 579 ALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-VTYNTLMNGVCC-DILDRAI 655 (783)
Q Consensus 579 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~-~~~~~A~ 655 (783)
.|++++|++.|++.++ +.| +...|..+..+|.+.|++++ ++.|++.++. .|+. ..|..+...+.. |++++|+
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665 234 34555566666666666666 6666655542 2322 233333333332 4555555
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 039931 656 IIAAKLLKMAFVPNV-VTTNVLLSHFCK 682 (783)
Q Consensus 656 ~~~~~~~~~~~~p~~-~~~~~ll~~~~~ 682 (783)
..++++++ +.|+. ..|..+..++..
T Consensus 555 ~~~~~al~--l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 555 RTLDEVPP--TSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTSCT--TSTTHHHHHHHHHHHTC-
T ss_pred HHHHhhcc--cCcccHHHHHHHHHHHHc
Confidence 55555544 33433 334444444333
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=5.8e-08 Score=89.68 Aligned_cols=161 Identities=10% Similarity=-0.028 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HH
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG-FC 185 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 185 (783)
+..+...+.+.|++++|...|+++++.. +.+...+..+...+.+.|++++|+..|+++....| +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 3344455556666666666666655543 34455555666666666666666666665555433 33222221111 11
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 039931 186 RNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKAR 265 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 265 (783)
..+...+|...+++..+.. +. +...+..+...+.+.|
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~------------------------------------------~~~~~~~la~~~~~~g 122 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PD------------------------------------------NFELACELAVQYNQVG 122 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TT------------------------------------------CHHHHHHHHHHHHHTT
T ss_pred hhcccchHHHHHHHHHHhC-CC------------------------------------------CHHHHHHHHHHHHHcc
Confidence 1111122333333333321 11 3455555555555666
Q ss_pred ChhHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHccCChhHHHHHHHHHH
Q 039931 266 DIDQANMLYEEMRSRDIAP-DAVTFNIIVSGHCKYGGMEDGDRLLRDLS 313 (783)
Q Consensus 266 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 313 (783)
++++|...|+++.+..+.+ +...+..+...+...|+.++|...|++..
T Consensus 123 ~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 123 RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 6666666666555543322 23345555555555566666655555543
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.73 E-value=5.2e-08 Score=87.19 Aligned_cols=143 Identities=7% Similarity=-0.137 Sum_probs=81.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhh
Q 039931 113 GYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRI 192 (783)
Q Consensus 113 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 192 (783)
.+...|++++|+..+....... +.+...+..+...|.+.|++++|++.|++.++..| .+..+|..+..++...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHH
Confidence 3444566666666666655432 12233445566666666677777777666666654 456666666666666777777
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 039931 193 GESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKAR 265 (783)
Q Consensus 193 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 265 (783)
|...|++..+.. +.+..++..+...|.+.|+.++|. ...+++..+..+ -+..+|+.....+.+.|
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa------~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRA------KYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHH------HHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHH------HHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 777666666553 334566666666666666665542 222344333221 14455555555555444
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.73 E-value=3.9e-07 Score=91.61 Aligned_cols=167 Identities=11% Similarity=-0.027 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHH-H
Q 039931 137 PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNI-L 215 (783)
Q Consensus 137 ~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-l 215 (783)
.+...+..+...+.+.|++++|...|++.++..| .+...+..+...+...|++++|...++++.... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 3445566666677777777777777777777655 456667777777777777777777777765542 44332222 2
Q ss_pred HHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhHHHHHHH
Q 039931 216 INAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAP-DAVTFNIIVS 294 (783)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 294 (783)
...+...++.++| ...+++..+..+ .+...+..+...|...|++++|++.|+++.+..... +...+..++.
T Consensus 192 ~~~l~~~~~~~~a-------~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 192 QIELLXQAADTPE-------IQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHTSCHH-------HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHhhcccCcc-------HHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 2234555666656 344555444332 256777777777777788888887777777753321 2456777777
Q ss_pred HHHccCChhHHHHHHHHHHh
Q 039931 295 GHCKYGGMEDGDRLLRDLSV 314 (783)
Q Consensus 295 ~~~~~g~~~~A~~~~~~~~~ 314 (783)
.+...|+.++|...+++...
T Consensus 264 ~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHH
Confidence 77777777777777766543
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=1.5e-06 Score=82.86 Aligned_cols=16 Identities=6% Similarity=-0.166 Sum_probs=6.6
Q ss_pred cCCHHHHHHHHHHHHH
Q 039931 509 RGKLNEALKLEREMRQ 524 (783)
Q Consensus 509 ~g~~~~A~~l~~~m~~ 524 (783)
.+++++|...|++..+
T Consensus 142 ~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSS 157 (212)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3344444444444433
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=1.1e-06 Score=83.80 Aligned_cols=175 Identities=12% Similarity=-0.022 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHH
Q 039931 410 AWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAG----LVDEAYGVFL 485 (783)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~ 485 (783)
|.+.|++..+.| ++..+..+...|...+++++|++.|++..+.| ++..+..+...|.. + +.++|++.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 45555556666666666666666666665543 44555555555555 4 5666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHH
Q 039931 486 EMSRIGFVPNNFAYNSLIAGFCN----RGKLNEALKLEREMRQKGLL-PDNFTFNIIINGFCK----QGRMKPAIDAFMD 556 (783)
Q Consensus 486 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 556 (783)
+..+.| +...+..|...|.. .+++++|.++|++..+.|.. .++..+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665543 44455555555554 55666666666666655321 014555555555555 5566666666666
Q ss_pred HHHcCCCCChhHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 039931 557 MYRTGLVPDIVTYNTLIGGYCKA-L-----DIVRADELVNKMYAGG 596 (783)
Q Consensus 557 m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 596 (783)
..+. .++...+..|...|... | ++++|...+++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6553 12334455555555432 2 5666666666655543
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=2.3e-07 Score=85.65 Aligned_cols=163 Identities=10% Similarity=-0.001 Sum_probs=114.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 039931 142 ITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCI 221 (783)
Q Consensus 142 ~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 221 (783)
+..+...+.+.|++++|...|++.++..| .+...+..+...+...|++++|...+++..+.. |+...+..+..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~---- 81 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAK---- 81 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHH----
Confidence 44556667777777777777777766654 456667777777777777777777777665432 23221111000
Q ss_pred cCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 039931 222 RGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG 301 (783)
Q Consensus 222 ~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 301 (783)
+ .+.+.++..+|+..|++..+..+. +...+..+...+...|+
T Consensus 82 ------------------------------------~-~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 82 ------------------------------------L-ELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGR 123 (176)
T ss_dssp ------------------------------------H-HHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTC
T ss_pred ------------------------------------H-HHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 0 001112223567888888776432 67888999999999999
Q ss_pred hhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 302 MEDGDRLLRDLSVSGLLP-NCTLYDITVAGLCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 302 ~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 349 (783)
+++|...++++.+..+.+ +...+..+...+...|+.++|...|++.+.
T Consensus 124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999886653 456888899999999999999999998765
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=1.5e-06 Score=83.86 Aligned_cols=189 Identities=9% Similarity=-0.021 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH--HHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS--ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSN--YTFNA 179 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ 179 (783)
+..+-.+...+.+.|++++|...|+++++...... ..++..+..++.+.|++++|+..|+++++..|.... .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 45677778889999999999999999998653221 367888999999999999999999999998764322 24555
Q ss_pred HHHHHHh------------------cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHH
Q 039931 180 LILGFCR------------------NGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDM 241 (783)
Q Consensus 180 l~~~~~~------------------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~ 241 (783)
+..++.. .|++++|...|+++++.. +.+..++...... ..+...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l-----------------~~~~~~ 145 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL-----------------VFLKDR 145 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH-----------------HHHHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH-----------------HHHHHH
Confidence 5555544 678999999999999764 2233333222111 111111
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 039931 242 IQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPD--AVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLL 318 (783)
Q Consensus 242 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 318 (783)
+.+ ....+...|.+.|++++|+..|+++++..+... ...+..+..++.+.|+.++|.+.++.+...++.
T Consensus 146 ~~~--------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 146 LAK--------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHH--------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHH--------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 111 234567788899999999999999988632211 245778888999999999999999988876543
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.66 E-value=2.3e-07 Score=94.39 Aligned_cols=167 Identities=10% Similarity=0.003 Sum_probs=96.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 039931 117 VEMSAEVMEILYRMREVGIMPSESAITILFKSLLR-VGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGES 195 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 195 (783)
.|++++|.+++++..+... .+ +.+ .++++.|...|.+. +..|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4667788888877665421 11 112 46777777777665 345667788888888
Q ss_pred HHHHHHhC----CCCC-CHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhH
Q 039931 196 LLHVMHKY----MCVA-DFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSP-NVVVYNALLNGYVKARDIDQ 269 (783)
Q Consensus 196 ~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 269 (783)
.|.+..+. +-.+ -..+|+.+...|.+.|++++|+..+++|..++... |-.+ -..+++.+...|.+ |++++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN---GTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 88776543 1111 13467777777778888888876665555554322 1111 13466667777766 77888
Q ss_pred HHHHHHHHHhCCCCC-C----HhHHHHHHHHHHccCChhHHHHHHHHHH
Q 039931 270 ANMLYEEMRSRDIAP-D----AVTFNIIVSGHCKYGGMEDGDRLLRDLS 313 (783)
Q Consensus 270 A~~~~~~m~~~g~~p-~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 313 (783)
|+..|++..+..... + ..++..+...+.+.|++++|...|++..
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 877777765421000 0 2234444444445555555555444443
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=6.1e-07 Score=90.18 Aligned_cols=168 Identities=7% Similarity=-0.046 Sum_probs=112.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
|.+...+..+...+.+.|++++|...|+++++.. +.+...+..+...+.+.|++++|...|+++....| .+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHH
Confidence 4455566677777777778888888777777765 45667777777777777888888877777766554 222233333
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCC-CChHHHHHHHH
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLS-PNVVVYNALLN 259 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~ 259 (783)
...+...++.++|...+++..+.. +.+...+..+...|...|++++| ...+.++.+.... .+...+..++.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A-------~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEA-------LELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHH-------HHHHHHHHhcccccccchHHHHHHH
Confidence 334556677777777777776654 45667777777777777777777 4566666554322 12556777777
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 039931 260 GYVKARDIDQANMLYEEMR 278 (783)
Q Consensus 260 ~~~~~g~~~~A~~~~~~m~ 278 (783)
.|...|+.++|...|++..
T Consensus 264 ~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHH
Confidence 7777777777777776654
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.63 E-value=4.3e-07 Score=81.16 Aligned_cols=133 Identities=9% Similarity=-0.023 Sum_probs=107.3
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 89 MVEFMCDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
.+..+.......|.++..+-.|...|.+.|++++|++.|+++++.+ +.+..+|..+...+.+.|++++|+..|++.++.
T Consensus 16 ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 16 YIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp HHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 3444444443334445567789999999999999999999999987 568899999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHH-HHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 039931 169 GPRPSNYTFNALILGFCRNGCIRIGESL-LHVMHKYMCVADFFAYNILINAYCIRGQ 224 (783)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (783)
.| .+..++..+...+.+.|++++|... +++..+.. +.+..+|......+...|+
T Consensus 95 ~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 95 NP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 76 6788999999999999999887665 58887764 4566777777777666664
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.61 E-value=3e-06 Score=81.61 Aligned_cols=189 Identities=8% Similarity=-0.055 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH--HHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIA-P-DAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNC--TLYD 325 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 325 (783)
+...+..+...+.+.|++++|+..|+++.+..+. | ....+..+..++.+.|++++|...|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456667777888999999999999999876332 1 1356777888899999999999999998876543221 1333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 039931 326 ITVAGLCW------------------AGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGL 387 (783)
Q Consensus 326 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 387 (783)
.+...+.. .|+.++|...|+++++..+. +...+....... .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHHH----
Confidence 33333433 45677777777777765322 222222111100 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 039931 388 TPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPIN--KVAFTVLLDGYFRIGDLIGAQSLWNELNRRKI 457 (783)
Q Consensus 388 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 457 (783)
.....+...+.+.|++++|+..++++++..+... ...+..+..++.+.|+.++|.+.++.+...++
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0113456678888999999999999888743311 25677888899999999999999988887644
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.60 E-value=6.9e-07 Score=99.73 Aligned_cols=154 Identities=14% Similarity=-0.059 Sum_probs=100.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 039931 117 VEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESL 196 (783)
Q Consensus 117 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 196 (783)
.|++++|...|+++++.. +.+...+..+...+.+.|++++|.+.|++.++..+ .+...+..+...+...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 366778888888877765 45567788888888888888888888888887755 5677778888888888888888888
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CChhHHHHH
Q 039931 197 LHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKA---RDIDQANML 273 (783)
Q Consensus 197 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~ 273 (783)
+++..+.. +.+...+..+...|.+.|++++|+ +.+++..+... .+..++..+...+.+. |++++|.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~-------~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAA-------AAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHH-------HHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 88877654 345677777888888888887774 45555544332 2566777788888888 888888888
Q ss_pred HHHHHhCC
Q 039931 274 YEEMRSRD 281 (783)
Q Consensus 274 ~~~m~~~g 281 (783)
+++..+.+
T Consensus 151 ~~~al~~~ 158 (568)
T 2vsy_A 151 VRAAVAQG 158 (568)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 88887764
No 115
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=4.3e-06 Score=83.61 Aligned_cols=190 Identities=11% Similarity=-0.061 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIR 607 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 607 (783)
+...+..+...+.+.|++++|...|++.++. .| +...|..+...|.+.|++++|.+.+++..+. .| +...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 4567777888888999999999999998875 35 6788888999999999999999999998873 45 56788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 039931 608 MHGYCNIRKMNQAAMMLDELVSAG----IVPNTVTYNTLMNGVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQ 683 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 683 (783)
..+|...|++++|...|++.++.. ..-+...+..+. ..++... .+.......++......+. . ...
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~i~~~l~-~-l~~ 148 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-------IAKKKRW-NSIEERRIHQESELHSYLT-R-LIA 148 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-------HHHHHHH-HHHHHTCCCCCCHHHHHHH-H-HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-------HHHHHHH-HHHHHHHHhhhHHHHHHHH-H-HHH
Confidence 999999999999999999887521 111111222111 1111111 1122222344444444443 2 337
Q ss_pred CChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHHHHHhcCCC
Q 039931 684 GMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQETSEKSLF 734 (783)
Q Consensus 684 g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 734 (783)
|++++|++.++++.+.+|+ +......+...+...++.++.++++.+++.+
T Consensus 149 ~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 149 AERERELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999998876 6666666666665556777788887766554
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=6.6e-07 Score=91.01 Aligned_cols=203 Identities=8% Similarity=-0.131 Sum_probs=116.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhh
Q 039931 152 VGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGK 231 (783)
Q Consensus 152 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 231 (783)
.|++++|.+++++..+.... . + +...+++++|...|.+. ...|...|++++|+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 56778888888877664321 1 0 11147788888777765 3567788999999776
Q ss_pred ccchHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHccCChhHH
Q 039931 232 CGAGRMIFDMIQEEGLSP-NVVVYNALLNGYVKARDIDQANMLYEEMRSR----DIAP-DAVTFNIIVSGHCKYGGMEDG 305 (783)
Q Consensus 232 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A 305 (783)
+.++.++.... |-.+ -..+|+.+...|.+.|++++|+..|++..+. |-.+ -..++..+...|.. |++++|
T Consensus 59 ~~~al~~~~~~---~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 59 YLQEAEAHANN---RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 66666665443 1111 1457888888888999999999998887643 1110 12345556666666 777777
Q ss_pred HHHHHHHHhCCCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHHcCCHHHH
Q 039931 306 DRLLRDLSVSGLLP-----NCTLYDITVAGLCWAGRLDEAMEFFEDMFEKG----ISPS-IFAFNSIIAAYSRAGLEENA 375 (783)
Q Consensus 306 ~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~~~~~li~~~~~~g~~~~A 375 (783)
.+.+++........ ...+++.+...|.+.|++++|+..|++..... ..++ ...+..++..+...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 77666655421100 12344555555555666666666555554421 0001 11334444444445555555
Q ss_pred HHHHHHHH
Q 039931 376 FEAYKIMH 383 (783)
Q Consensus 376 ~~~~~~m~ 383 (783)
...|++..
T Consensus 215 ~~~~~~al 222 (307)
T 2ifu_A 215 QKCVRESY 222 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 55555554
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.58 E-value=1.2e-06 Score=97.86 Aligned_cols=152 Identities=9% Similarity=-0.086 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 039931 370 GLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLW 449 (783)
Q Consensus 370 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 449 (783)
|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55566666666655542 123455555666666666666666666666555322 4555555666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 039931 450 NELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNR---GKLNEALKLEREMRQK 525 (783)
Q Consensus 450 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~ 525 (783)
++..+.... +...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 665554332 45555555556666666666666666555532 22344555555555555 5566666665555554
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.57 E-value=8.2e-07 Score=76.49 Aligned_cols=111 Identities=5% Similarity=-0.147 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALIL 182 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 182 (783)
....+..+...|.+.|++++|+..|++.++.+ +.+..+|..+...+.+.|++++|+..|++.++.+| .+...|..+..
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHH
Confidence 34578889999999999999999999999887 56789999999999999999999999999999876 67889999999
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKYMCVADFFAYNILI 216 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (783)
++...|++++|...|++.++.. +.+...+..|.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 9999999999999999998864 34455554443
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=3e-07 Score=92.12 Aligned_cols=194 Identities=11% Similarity=-0.061 Sum_probs=122.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALI 181 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 181 (783)
.+...+..+...+.+.|++++|...|+++++.. +.+...|..+...+.+.|++++|+..|+++++..+ .+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 345678888889999999999999999988875 45778888899999999999999999999988765 5777888889
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHH
Q 039931 182 LGFCRNGCIRIGESLLHVMHKYMCVADF-FAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNG 260 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 260 (783)
.++...|++++|...|++..+.. |+. ..+...+....+..+ ...+.........++......+...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~l~~l 146 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAK-----------KKRWNSIEERRIHQESELHSYLTRL 146 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHH-----------HHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999998887643 211 111111111111110 1122223333334444444444322
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhHH-HHHHHHHHcc-CChhHHHHHHHHHHh
Q 039931 261 YVKARDIDQANMLYEEMRSRDIAPDAVTF-NIIVSGHCKY-GGMEDGDRLLRDLSV 314 (783)
Q Consensus 261 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~-g~~~~A~~~~~~~~~ 314 (783)
..|++++|++.+++..+. .|+.... ..+-..+.+. +..++|.++|..+.+
T Consensus 147 --~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 --IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp --HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred --HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 257777777777776654 3443322 2222222222 445555555555443
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.53 E-value=4.9e-05 Score=76.80 Aligned_cols=191 Identities=9% Similarity=-0.037 Sum_probs=138.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVG-DYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
+++.+-....+.+..++|+.++++++..+ +.+..+|+.--..+...| .+++++.+++.++...| .+..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 34444444445556678999999999887 566777888888888888 59999999999998876 6777888888877
Q ss_pred Hhc-C-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH-hhhccchHHHHHHHHHCCCCCChHHHHHHHHHH
Q 039931 185 CRN-G-CIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYA-LGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGY 261 (783)
Q Consensus 185 ~~~-g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 261 (783)
... + ++++++++++++.+.. +.|..+|+--.-.+.+.|..+.+ ...+.++.+..+++.+..+. |..+|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 776 7 8899999999998765 56777777766666666655500 00111225677777776544 889999998888
Q ss_pred HhcCC-------hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 039931 262 VKARD-------IDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG 301 (783)
Q Consensus 262 ~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 301 (783)
.+.++ ++++++.++++....+. |...|+-+-..+.+.|.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 88876 68899999988887544 67777776665555554
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.52 E-value=3.3e-06 Score=71.99 Aligned_cols=115 Identities=16% Similarity=0.106 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
..++..+...|.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|...|+++....+ .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 5678899999999999999999999998876 46788899999999999999999999999998865 578889999999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCI 221 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 221 (783)
+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 999999999999999998764 3455556555555443
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.51 E-value=7.7e-07 Score=79.18 Aligned_cols=108 Identities=7% Similarity=-0.107 Sum_probs=96.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 039931 99 LFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFN 178 (783)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 178 (783)
..|.++..+..+...+.+.|++++|...|+++++.+ +.+...|..+..++.+.|++++|+..|+++++..| .++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHH
Confidence 345567789999999999999999999999999987 56889999999999999999999999999999877 5777888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFF 210 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 210 (783)
.+..++...|++++|...|++..+.. ||..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999999999998864 5543
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.50 E-value=5.8e-05 Score=76.27 Aligned_cols=171 Identities=8% Similarity=-0.075 Sum_probs=125.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-C-CcchHh
Q 039931 153 GDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNG-CIRIGESLLHVMHKYMCVADFFAYNILINAYCIR-G-QTSYAL 229 (783)
Q Consensus 153 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g-~~~~A~ 229 (783)
+..++|++++++++..+| .+..+|+.-...+...| .+++++.+++.+++.. +.+..+|+.-...+.+. + +.+++
T Consensus 68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E- 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE- 144 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH-
T ss_pred CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH-
Confidence 455689999999999876 67778999988898889 5999999999999875 56777888887777776 6 77766
Q ss_pred hhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 039931 230 GKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDID--------QANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGG 301 (783)
Q Consensus 230 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 301 (783)
..+++.+.+...+ |-.+|+...-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 145 ------L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 145 ------IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp ------HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred ------HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 5678888776543 8889988877777777777 899999999987655 77788887777766665
Q ss_pred -------hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 039931 302 -------MEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAG 335 (783)
Q Consensus 302 -------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 335 (783)
++++.+.++++....+. |...|+-+-..+.+.|
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 45555555555554322 4444444444444333
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=2.4e-06 Score=77.43 Aligned_cols=134 Identities=13% Similarity=-0.004 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
...+..+...+...|++++|...|++.++.. +.+..++..+...+...|++++|+..|++.++..+ .+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 3568888999999999999999999998876 45788899999999999999999999999999865 678889999999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhH--HHHHHHHHhcCCcchHhhhccchHHHHH
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAY--NILINAYCIRGQTSYALGKCGAGRMIFD 240 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~a~~~~~ 240 (783)
+...|++++|...+++..+.. +.+...+ ..++..+.+.|++++|+..++.+..+++
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 999999999999999998764 3344455 3344447777888888655544444443
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.49 E-value=1.6e-06 Score=74.56 Aligned_cols=113 Identities=10% Similarity=0.043 Sum_probs=79.3
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCC-CHHH
Q 039931 597 LDPDI-TTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN-TVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVP-NVVT 672 (783)
Q Consensus 597 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~ 672 (783)
+.|+. ..+......|.+.|++++|++.|++.++. .|+ ...|..+...+.. |++++|+..++++++ +.| +...
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a 83 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKG 83 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHH
Confidence 34432 45666677777777777777777776652 333 3444444444443 677777777777776 345 4567
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 039931 673 TNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRA 714 (783)
Q Consensus 673 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 714 (783)
|..+...|...|++++|++.++++++++|+ +..++..|.+.
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHh
Confidence 888888999999999999999999999987 88888777654
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=2.7e-06 Score=73.26 Aligned_cols=120 Identities=9% Similarity=-0.011 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALIL 182 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 182 (783)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.+...+ .+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence 45678899999999999999999999998875 45788899999999999999999999999999865 56888999999
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCc
Q 039931 183 GFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQT 225 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 225 (783)
.+...|++++|...+++..+.. +.+...+..+...+.+.|+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999998764 45677888888888777765
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=3.1e-06 Score=73.29 Aligned_cols=120 Identities=5% Similarity=-0.131 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
+.++..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|+..|+++++..+ .+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 4567789999999999999999999999999876 45788899999999999999999999999999865 578889999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRG 223 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 223 (783)
..++...|++++|...|++..+.. +.+...+..+...+.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 999999999999999999998764 334566666666665544
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.47 E-value=1.5e-05 Score=80.22 Aligned_cols=163 Identities=11% Similarity=-0.070 Sum_probs=87.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHh----HHHHHHHHHHccCChhHHHHHHHHHHhCCCC-Cc----HHHHH
Q 039931 256 ALLNGYVKARDIDQANMLYEEMRSRDI-APDAV----TFNIIVSGHCKYGGMEDGDRLLRDLSVSGLL-PN----CTLYD 325 (783)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 325 (783)
..+..+...|++++|.+.+++..+... .|+.. .+..+...+...|++++|...++++...... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888889999998888876422 12211 2223444555566677777777766653222 11 22456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHH
Q 039931 326 ITVAGLCWAGRLDEAMEFFEDMFEK-----GISPS-IFAFNSIIAAYSRAGLEENAFEAYKIMHQF----GLTPS-SCTC 394 (783)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~ 394 (783)
.+...|...|++++|...|++..+. +..+. ..++..+...|.+.|++++|+..+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 6666666666666666666666531 11111 224555555666666666666655554431 11111 3344
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHH
Q 039931 395 SSLLVGLCKKGR-LPEAWDLLCKMI 418 (783)
Q Consensus 395 ~~li~~~~~~g~-~~~a~~~~~~~~ 418 (783)
..+...+.+.|+ .++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 455555555553 355555554443
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=2e-05 Score=79.30 Aligned_cols=165 Identities=13% Similarity=0.004 Sum_probs=110.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--H
Q 039931 463 AFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNN------FAYNSLIAGFCNRGKLNEALKLEREMRQKGL---LPD--N 531 (783)
Q Consensus 463 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~---~p~--~ 531 (783)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566677788888888888777664311 11 1233455556677888888888888765321 111 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-
Q 039931 532 FTFNIIINGFCKQGRMKPAIDAFMDMYRT-GLVPD-----IVTYNTLIGGYCKALDIVRADELVNKMYAG----GLDPD- 600 (783)
Q Consensus 532 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~- 600 (783)
.+++.+...|...|++++|...|+++.+. ...|+ ..++..+...|...|++++|++.+++..+. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47778888888888888888888887621 01122 257778888888888888888888887652 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 039931 601 ITTYNIRMHGYCNIRKMNQA-AMMLDELV 628 (783)
Q Consensus 601 ~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 628 (783)
..+|..+..+|.+.|++++| ...+++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56778888888888888888 66677665
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.45 E-value=3e-05 Score=78.05 Aligned_cols=127 Identities=13% Similarity=0.005 Sum_probs=66.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH----c-CCCCC-hhHHH
Q 039931 502 LIAGFCNRGKLNEALKLEREMRQKGLL-PD----NFTFNIIINGFCKQGRMKPAIDAFMDMYR----T-GLVPD-IVTYN 570 (783)
Q Consensus 502 li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~~~~ 570 (783)
+...+...+++++|...+++..+.... ++ ..+++.+...|...|++++|...|+++++ . +..+. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 333444444555555555555442111 11 22455555555566666666665555552 1 11111 23556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 039931 571 TLIGGYCKALDIVRADELVNKMYA----GGLDPD-ITTYNIRMHGYCNIRK-MNQAAMMLDELV 628 (783)
Q Consensus 571 ~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 628 (783)
.+...|.+.|++++|.+.+++..+ .+..+. ..+|..+..+|.+.|+ +++|.+.+++.+
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 666666666666666666665554 121222 4566666677777773 577777666665
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.43 E-value=1.1e-05 Score=76.61 Aligned_cols=126 Identities=13% Similarity=-0.074 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK 578 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 578 (783)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|...|++.++.. +.+...|..+...|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555566666666666666552 3456666666666666666666666666666542 2345566666666667
Q ss_pred cCCHHHHHHHHHHHHHCC--------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 579 ALDIVRADELVNKMYAGG--------------LDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 579 ~g~~~~A~~~~~~m~~~g--------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.|++++|.+.+++..+.. ..| +...+..+..+|.+.|++++|...|++.++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777776666521 111 125677777788888888888888887776
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.42 E-value=1.3e-05 Score=76.29 Aligned_cols=129 Identities=6% Similarity=-0.118 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
..+..+...+...|++++|+..|++.. .|+..++..+...+.+.|++++|+..|++.++..+ .+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 346677888999999999999999874 56888999999999999999999999999999865 6788999999999
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCC----------------HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCC
Q 039931 185 CRNGCIRIGESLLHVMHKYMCVAD----------------FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEG 246 (783)
Q Consensus 185 ~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g 246 (783)
...|++++|...|++..+.. +.+ ...+..+...|.+.|++++| ...++...+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-------~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA-------EEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH-------HHHHHHHHHcC
Confidence 99999999999999998754 222 37888999999999999999 56778777654
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.41 E-value=2.7e-05 Score=78.38 Aligned_cols=166 Identities=10% Similarity=-0.005 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--H
Q 039931 533 TFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDI------VTYNTLIGGYCKALDIVRADELVNKMYAGG---LDPD--I 601 (783)
Q Consensus 533 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~ 601 (783)
.+...+..+...|++++|.+.+.+..+... ... ..+..+...+...|++++|++.+++..+.. ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344455566677777777777776665421 111 123334455566677777777777776521 1111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHhh-ccHHHHHHHHHHHHHc----CCCCC-
Q 039931 602 TTYNIRMHGYCNIRKMNQAAMMLDELVSA-GIVPNT-----VTYNTLMNGVCC-DILDRAIIIAAKLLKM----AFVPN- 669 (783)
Q Consensus 602 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-----~~~~~li~~~~~-~~~~~A~~~~~~~~~~----~~~p~- 669 (783)
.+|+.+...|...|++++|...+++.++. ...|+. .++..+...+.. |++++|+..+++.++. +..+.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46777777777777777777777777621 011221 234444444443 6777777777765542 11111
Q ss_pred HHHHHHHHHHHHhcCChhhH-HHHHHHHhhc
Q 039931 670 VVTTNVLLSHFCKQGMPEKT-LLWGQKLSEI 699 (783)
Q Consensus 670 ~~~~~~ll~~~~~~g~~~~A-~~~~~~~~~~ 699 (783)
..+|..+...|.+.|++++| ..+++++..+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45677777788888998888 7777777653
No 134
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=0.00023 Score=71.60 Aligned_cols=98 Identities=4% Similarity=-0.074 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC-HHHHHHH
Q 039931 512 LNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGR--MKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALD-IVRADEL 588 (783)
Q Consensus 512 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~ 588 (783)
+++++.+++.+....++ +..+|+.-...+.+.|+ +++++.+++.+++.. +-|..+|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34555555555554333 45555554444444442 455555555555532 2244455544444445554 3555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH
Q 039931 589 VNKMYAGGLDPDITTYNIRMHGYC 612 (783)
Q Consensus 589 ~~~m~~~g~~p~~~~~~~li~~~~ 612 (783)
++++++.. +-|...|+.....+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHH
Confidence 55555522 224444544444433
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.36 E-value=2e-06 Score=81.03 Aligned_cols=161 Identities=7% Similarity=-0.065 Sum_probs=108.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCC
Q 039931 115 LRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL----G-PRPSNYTFNALILGFCRNGC 189 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~ 189 (783)
...|++++|.+.++.+.. .......+++.+...+...|++++|...|++.+.. + ......++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457888889885555543 22345667888888889999999999999888762 1 12334578888888999999
Q ss_pred hhhHHHHHHHHHhC----CCC--CCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCC-CChHHHHHHHHHHH
Q 039931 190 IRIGESLLHVMHKY----MCV--ADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLS-PNVVVYNALLNGYV 262 (783)
Q Consensus 190 ~~~A~~~~~~m~~~----g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~ 262 (783)
+++|...+++..+. +-. ....++..+...+...|++++|+..++++..+.... +.. .-..++..+...+.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA---DDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHH
Confidence 99999988877653 211 123567778888888888888876555554443321 111 11234567777888
Q ss_pred hcCChhHHHHHHHHHHh
Q 039931 263 KARDIDQANMLYEEMRS 279 (783)
Q Consensus 263 ~~g~~~~A~~~~~~m~~ 279 (783)
..|++++|.+.+++..+
T Consensus 159 ~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 88888888888877654
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.35 E-value=1.5e-05 Score=72.10 Aligned_cols=92 Identities=7% Similarity=-0.043 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 039931 501 SLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580 (783)
Q Consensus 501 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 580 (783)
.+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++.++.. +.+...|..+...+...|
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 3333444444444444444444433211 33444444444444444444444444444321 123334444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 039931 581 DIVRADELVNKMYA 594 (783)
Q Consensus 581 ~~~~A~~~~~~m~~ 594 (783)
++++|.+.++++.+
T Consensus 96 ~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 96 KFRAALRDYETVVK 109 (166)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 44444444444443
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.35 E-value=1e-05 Score=78.95 Aligned_cols=196 Identities=6% Similarity=-0.108 Sum_probs=134.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCC---------------
Q 039931 508 NRGKLNEALKLEREMRQKGLLPDNFTFNII-------INGFCKQGRMKPAIDAFMDMYRTGLVPD--------------- 565 (783)
Q Consensus 508 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------- 565 (783)
..++...|.+.|.++....+. ....|..+ ...+.+.++..+++..+...++ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 567888888888888876544 56667666 4556666666666666655544 2222
Q ss_pred -------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 039931 566 -------IVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT-- 636 (783)
Q Consensus 566 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 636 (783)
...+..+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+..... |+.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCccc
Confidence 122345667778889999999999888763 465546666777888999999999999855432 322
Q ss_pred --HHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHH
Q 039931 637 --VTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVPN--VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIM 711 (783)
Q Consensus 637 --~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l 711 (783)
..+..+-.++.. |++++|+..+++....+..|. ...+.....++.+.|+.++|...++++...+|+ ...+..|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence 123333334443 889999999998876443354 235566667889999999999999999999975 5566555
Q ss_pred HH
Q 039931 712 DR 713 (783)
Q Consensus 712 ~~ 713 (783)
.+
T Consensus 248 ~~ 249 (282)
T 4f3v_A 248 KD 249 (282)
T ss_dssp HC
T ss_pred hC
Confidence 44
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.34 E-value=5.2e-06 Score=73.76 Aligned_cols=102 Identities=9% Similarity=-0.028 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 039931 100 FGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNA 179 (783)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 179 (783)
.|.+...+..+...+.+.|++++|...|++++..+ +.+...|..+...+...|++++|+..|++++...| .+...+..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHH
Confidence 34556778889999999999999999999999887 56888999999999999999999999999999876 56778888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhC
Q 039931 180 LILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
+..++...|++++|...|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998875
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.34 E-value=1.2e-05 Score=71.34 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 039931 532 FTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHG 610 (783)
Q Consensus 532 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~ 610 (783)
..+..+...+.+.|++++|...|++.++.. +.+...|..+..+|...|++++|++.|++..+ +.| +...|..+..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHH
Confidence 344555555566666666666666665542 22455566666666666666666666666655 233 34555666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 039931 611 YCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 611 ~~~~g~~~~A~~~~~~m~~ 629 (783)
|.+.|++++|...|++.++
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666655
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.31 E-value=2.2e-05 Score=66.68 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHc
Q 039931 500 NSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKA 579 (783)
Q Consensus 500 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 579 (783)
..+...+...|++++|.+.++++.+... .+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 3333333444444444444444333221 123333334444444444444444444443321 12233333444444444
Q ss_pred CCHHHHHHHHHHHH
Q 039931 580 LDIVRADELVNKMY 593 (783)
Q Consensus 580 g~~~~A~~~~~~m~ 593 (783)
|++++|...++++.
T Consensus 91 ~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 91 GDYDEAIEYYQKAL 104 (125)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 44444444444443
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.30 E-value=7e-06 Score=84.44 Aligned_cols=125 Identities=6% Similarity=-0.079 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS--------------ESAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
+...+..+...|.+.|++++|+..|++.++...... ..+|..+...+.+.|++++|+..|+++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999999998863322 588999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHh
Q 039931 169 GPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYAL 229 (783)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 229 (783)
.| .+..+|..+..++...|++++|+..|++..+.. +.+..++..+...+.+.|+.++|.
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 76 688899999999999999999999999998875 456788899999999999888774
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.29 E-value=0.00022 Score=71.64 Aligned_cols=95 Identities=6% Similarity=-0.096 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 039931 443 IGAQSLWNELNRRKIFPDAVAFSAYINGLSKAG--LVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGK-LNEALKLE 519 (783)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~l~ 519 (783)
++++.+++.+....++ +..+|+.-...+.+.+ .+++++++++.+.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3444444444443333 4444444444444444 2445555555544432 2233444444444444444 34455555
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q 039931 520 REMRQKGLLPDNFTFNIIING 540 (783)
Q Consensus 520 ~~m~~~~~~p~~~~~~~li~~ 540 (783)
+++++..+. |...|+.....
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHCCC-CHHHHHHHHHH
Confidence 554444333 44444444333
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.29 E-value=7.7e-06 Score=75.22 Aligned_cols=119 Identities=12% Similarity=0.118 Sum_probs=79.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHHcCCH--HH
Q 039931 508 NRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGG-YCKALDI--VR 584 (783)
Q Consensus 508 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~~ 584 (783)
..|++++|...+++..+.... +...+..+...|...|++++|...|++..+.. +.+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456667777777776665432 56677777777777777777777777777642 2355666666666 6677777 77
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 585 ADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVSA 630 (783)
Q Consensus 585 A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 630 (783)
|...++++.+. .| +...+..+...|...|++++|...|++.++.
T Consensus 100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88777777763 34 4566777777788888888888888877763
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.28 E-value=6.2e-06 Score=72.70 Aligned_cols=101 Identities=10% Similarity=-0.084 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
|.+...+..+...+.+.|++++|...|++++..+ +.+...|..+...+.+.|++++|+..|++.+..+| .+...+..+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHH
Confidence 4455677888899999999999999999999887 56788899999999999999999999999999876 567788889
Q ss_pred HHHHHhcCChhhHHHHHHHHHhC
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
..++...|++++|...|++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998865
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.7e-05 Score=68.08 Aligned_cols=98 Identities=6% Similarity=-0.097 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
...+..+...+.+.|++++|+..|++.++.+ +.+...|..+...+.+.|++++|+..|++.++..| .+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 4568888899999999999999999999886 56788999999999999999999999999999876 578889999999
Q ss_pred HHhcCChhhHHHHHHHHHhC
Q 039931 184 FCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~ 203 (783)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999998865
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=2.6e-05 Score=65.51 Aligned_cols=109 Identities=9% Similarity=-0.040 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+..+ .+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4578888999999999999999999998876 45788899999999999999999999999999865 578889999999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNIL 215 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (783)
+...|++++|...+++..+.. +.+...+..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 999999999999999998765 3344444443
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=1e-05 Score=76.13 Aligned_cols=156 Identities=11% Similarity=-0.091 Sum_probs=81.8
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCh
Q 039931 473 KAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK----GLL-PDNFTFNIIINGFCKQGRM 547 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~ 547 (783)
..|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1123345555555555666666666666555441 111 1234555566666667777
Q ss_pred HHHHHHHHHHHHc----CCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCC
Q 039931 548 KPAIDAFMDMYRT----GLVP--DIVTYNTLIGGYCKALDIVRADELVNKMYAGG--L-DPD--ITTYNIRMHGYCNIRK 616 (783)
Q Consensus 548 ~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-~p~--~~~~~~li~~~~~~g~ 616 (783)
++|...+++..+. +-.| ...++..+...+...|++++|...+++..+.. . .+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7776666665532 1011 12345666666667777777777776665310 0 111 2335666677777777
Q ss_pred HHHHHHHHHHHHH
Q 039931 617 MNQAAMMLDELVS 629 (783)
Q Consensus 617 ~~~A~~~~~~m~~ 629 (783)
+++|.+.+++.++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776653
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.25 E-value=5.8e-06 Score=80.68 Aligned_cols=51 Identities=8% Similarity=-0.018 Sum_probs=32.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHh
Q 039931 116 RVEMSAEVMEILYRMREVGIMPSESAITIL-------FKSLLRVGDYGSVWKLFRDMIH 167 (783)
Q Consensus 116 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------l~~l~~~g~~~~A~~~~~~~~~ 167 (783)
..++...|.+.|.++.+.+ +.....|+.+ ...+.+.++..+++..+...+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~ 75 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ 75 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777777777777765 4556667666 4555555555555555555544
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.24 E-value=2.4e-05 Score=67.11 Aligned_cols=115 Identities=11% Similarity=-0.003 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 039931 498 AYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYC 577 (783)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 577 (783)
.+..+...+...|++++|...+++....... +...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444444444555555555555554443221 34444445555555555555555555554431 123444455555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 039931 578 KALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRK 616 (783)
Q Consensus 578 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 616 (783)
..|++++|.+.+++..+. .| +...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 555555555555555442 22 33444444444444443
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.23 E-value=1.1e-05 Score=74.10 Aligned_cols=117 Identities=6% Similarity=-0.014 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHHH
Q 039931 440 GDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAG-FCNRGKL--NEAL 516 (783)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~A~ 516 (783)
|++++|...++...+..+. +...|..+...|...|++++|...|++..+.. +.+...+..+... +...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4444444444444333221 33444444444444444444444444444321 1233344444444 3444444 5555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039931 517 KLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 517 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 559 (783)
..+++..+..+. +...+..+...|...|++++|...|+++.+
T Consensus 102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555554443222 344444444555555555555555555544
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.21 E-value=1.8e-05 Score=68.01 Aligned_cols=107 Identities=6% Similarity=-0.037 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--C----HHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRP--S----NYTFN 178 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~ 178 (783)
..+..|...|.+.|++++|+..|+++++.+ +.+...|+.+..+|.+.|++++|++.|++.++..+.. + ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 467889999999999999999999999987 5678889999999999999999999999998764321 1 24678
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNI 214 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (783)
.++.++...|++++|++.|++.++. .||..+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 8889999999999999999998874 466554443
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.21 E-value=3.1e-06 Score=75.22 Aligned_cols=110 Identities=12% Similarity=-0.018 Sum_probs=91.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 039931 125 EILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 125 ~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
..|++++..+ +.+...+..+...+.+.|++++|+..|++.+...| .+...|..+..++...|++++|...|++..+..
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3456666554 34566788899999999999999999999999876 688899999999999999999999999998875
Q ss_pred CCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHH
Q 039931 205 CVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 205 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
+.+...+..+..+|...|++++|+ ..|+...+
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~-------~~~~~al~ 117 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAE-------SGLFLAQE 117 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHH-------HHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHH-------HHHHHHHH
Confidence 456788899999999999999995 45555544
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=1.1e-05 Score=67.12 Aligned_cols=102 Identities=8% Similarity=-0.090 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRP--SNYTFN 178 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~ 178 (783)
|.+..++..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|+..|++.++..+ . +...+.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHH
Confidence 3445678888999999999999999999998876 46778899999999999999999999999999865 4 678899
Q ss_pred HHHHHHHhc-CChhhHHHHHHHHHhCC
Q 039931 179 ALILGFCRN-GCIRIGESLLHVMHKYM 204 (783)
Q Consensus 179 ~l~~~~~~~-g~~~~A~~~~~~m~~~g 204 (783)
.+...+... |++++|.+.+++..+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999999 99999999999998764
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.20 E-value=2.8e-05 Score=67.04 Aligned_cols=116 Identities=12% Similarity=-0.041 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 461 AVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIING 540 (783)
Q Consensus 461 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 540 (783)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 3444555555555555555555555554432 223445555555555555555555555555544222 44555555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcC
Q 039931 541 FCKQGRMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKAL 580 (783)
Q Consensus 541 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g 580 (783)
+.+.|++++|.+.|++..+. .| +...+..+...+...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 55666666666666655543 23 2344444444444433
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.17 E-value=2.7e-05 Score=79.94 Aligned_cols=128 Identities=10% Similarity=-0.046 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039931 498 AYNSLIAGFCNRGKLNEALKLEREMRQKGLLPD--------------NFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLV 563 (783)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 563 (783)
.+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 344444444445555555555554444322211 4566667777777777777777777777642 2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 039931 564 PDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQA-AMMLDELV 628 (783)
Q Consensus 564 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 628 (783)
.+...|..+..+|...|++++|+..|++.++. .| +...+..+..++.+.|+.++| ..+++.|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777763 34 456666777777777777766 33555554
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.15 E-value=2.5e-05 Score=70.67 Aligned_cols=101 Identities=5% Similarity=-0.079 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039931 102 SDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALI 181 (783)
Q Consensus 102 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 181 (783)
.+...+..+...|.+.|++++|+..|++.++.. +.+...|..+...+.+.|++++|+..|++.++..+ .+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 345678899999999999999999999999886 56788999999999999999999999999999876 5788999999
Q ss_pred HHHHhcCChhhHHHHHHHHHhCC
Q 039931 182 LGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
.++...|++++|...|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999998753
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=1.5e-05 Score=68.47 Aligned_cols=113 Identities=10% Similarity=0.015 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CC----HHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPR--PS----NYTF 177 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 177 (783)
...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++++...+. ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4578889999999999999999999998876 567888999999999999999999999999887542 22 7788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 039931 178 NALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAY 219 (783)
Q Consensus 178 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (783)
..+...+...|++++|...|++..+.. |+......+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 899999999999999999999998764 5665555554443
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.14 E-value=3.9e-05 Score=66.71 Aligned_cols=101 Identities=10% Similarity=-0.144 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNAL 180 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 180 (783)
+.++..+..+...+...|++++|...|.+.++.+ +.+...|..+...+...|++++|...|++.++..+ .+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 4567788899999999999999999999988876 45678888999999999999999999999998875 577788889
Q ss_pred HHHHHhcCChhhHHHHHHHHHhC
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
..++...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999888764
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.14 E-value=2.9e-05 Score=66.77 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGG--LDPD----ITTYNIR 607 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~l 607 (783)
+..+...+.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|++.+++.++.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444445555555555555444431 1134444444455555555555555554444310 0011 1234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 039931 608 MHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~ 629 (783)
..++...|++++|++.|++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555544
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.10 E-value=4.7e-05 Score=71.37 Aligned_cols=122 Identities=8% Similarity=-0.073 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS---------------ESAITILFKSLLRVGDYGSVWKLFRDMIHLG 169 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---------------~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 169 (783)
..+..+...+.+.|++++|+..|++.++...... ...+..+...+.+.|++++|+..|++.++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4678888999999999999999999998652221 2788889999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 039931 170 PRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYA 228 (783)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 228 (783)
+ .+...+..+..++...|++++|...|++..+.. +.+..++..+...+...++.+++
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 5 678889999999999999999999999998764 45667788887777776666555
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=6.6e-05 Score=66.13 Aligned_cols=111 Identities=8% Similarity=-0.063 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS----ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYT 176 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 176 (783)
+.+...+..+...+.+.|++++|...|++.++.. |+ ...+..+...+...|++++|+..|++.++..+ .+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHH
Confidence 4567889999999999999999999999999875 44 67888999999999999999999999998865 56888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 039931 177 FNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNIL 215 (783)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (783)
+..+..++...|++++|...|++..+.. +.+...+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 8999999999999999999999998764 2344444433
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.09 E-value=2.6e-05 Score=66.41 Aligned_cols=95 Identities=13% Similarity=-0.063 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCR 186 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (783)
+..+...+.+.|++++|+..|+++++.. +.+...|..+...+.+.|++++|+..|++.++..| .+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 5567788899999999999999999886 56888999999999999999999999999999876 577789999999999
Q ss_pred cCChhhHHHHHHHHHhC
Q 039931 187 NGCIRIGESLLHVMHKY 203 (783)
Q Consensus 187 ~g~~~~A~~~~~~m~~~ 203 (783)
.|++++|+..+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998865
No 163
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.07 E-value=7.5e-05 Score=63.91 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 039931 533 TFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGY 611 (783)
Q Consensus 533 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~ 611 (783)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++.++. .| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 34444445555555555555555555432 223455555555555555555555555555542 23 344555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 039931 612 CNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 612 ~~~g~~~~A~~~~~~m~~ 629 (783)
...|++++|...|++.++
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 555555555555555543
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.05 E-value=5.6e-06 Score=77.84 Aligned_cols=149 Identities=11% Similarity=-0.060 Sum_probs=76.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---------------HHHH
Q 039931 113 GYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPS---------------NYTF 177 (783)
Q Consensus 113 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~ 177 (783)
.....|.+++|.+.++.-.... ......+..+...+.+.|++++|+..|++.++..+... ...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3334455555555554221110 11234566777788888888888888888887644322 2456
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHH
Q 039931 178 NALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNAL 257 (783)
Q Consensus 178 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 257 (783)
..+..++...|++++|+..+++..+.. +.+...+..+..+|...|++++|+ ..|++..+... .+..++..+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~-------~~~~~al~~~p-~~~~~~~~l 162 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAK-------ENLYKAASLNP-NNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHH-------HHHHHHHHHST-TCHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHH-------HHHHHHHHHCC-CcHHHHHHH
Confidence 666666666666666666666665543 334555555555565666665552 33333333211 134445555
Q ss_pred HHHHHhcCChhHHH
Q 039931 258 LNGYVKARDIDQAN 271 (783)
Q Consensus 258 i~~~~~~g~~~~A~ 271 (783)
...+.+.++.+++.
T Consensus 163 ~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 163 ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 55554444444443
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.05 E-value=0.00016 Score=60.41 Aligned_cols=94 Identities=15% Similarity=0.086 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCN 613 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 613 (783)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3344444444444444444444444321 1233444444444444444444444444444421 1133444444444445
Q ss_pred cCCHHHHHHHHHHHHH
Q 039931 614 IRKMNQAAMMLDELVS 629 (783)
Q Consensus 614 ~g~~~~A~~~~~~m~~ 629 (783)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555544443
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.00 E-value=0.00017 Score=62.48 Aligned_cols=98 Identities=10% Similarity=-0.057 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNIL 215 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (783)
+.+...+..+...+...|++++|+..|.+.+...+ .+...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 45678899999999999999999999999999876 578899999999999999999999999998875 4568899999
Q ss_pred HHHHHhcCCcchHhhhccch
Q 039931 216 INAYCIRGQTSYALGKCGAG 235 (783)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~a 235 (783)
...|...|++++|+..++.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 99999999999996544333
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.99 E-value=5.6e-05 Score=64.81 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGG--LDPD----ITTYNIR 607 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~l 607 (783)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. ..++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3333444444444444444444444321 1233344444444444444444444444444311 0011 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 039931 608 MHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 608 i~~~~~~g~~~~A~~~~~~m~~ 629 (783)
..++...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444555555555555544444
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=0.00023 Score=62.60 Aligned_cols=110 Identities=10% Similarity=-0.012 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCC-CHHHH
Q 039931 600 DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN----TVTYNTLMNGVCC-DILDRAIIIAAKLLKMAFVP-NVVTT 673 (783)
Q Consensus 600 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~ 673 (783)
+...+..+...+...|++++|...|++.++. .|+ ...|..+...+.. +++++|+..+++.++. .| +...|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 4455666666666666666666666666642 344 2333333333332 6677777777776663 34 44667
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 039931 674 NVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRA 714 (783)
Q Consensus 674 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 714 (783)
..+...|...|++++|..++++++++.|. +..++..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 77777888899999999999999998876 66666665554
No 169
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.97 E-value=6.6e-05 Score=65.96 Aligned_cols=93 Identities=9% Similarity=-0.147 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 039931 534 FNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYC 612 (783)
Q Consensus 534 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~ 612 (783)
+..+...+.+.|++++|...|++.+... +.+...|..+..+|...|++++|+..+++..+. .| +...+..+..+|.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 3334444555555555555555555432 124444555555555555555555555555542 22 3344555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 039931 613 NIRKMNQAAMMLDELVS 629 (783)
Q Consensus 613 ~~g~~~~A~~~~~~m~~ 629 (783)
..|++++|...|++.++
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.0037 Score=66.47 Aligned_cols=121 Identities=10% Similarity=0.019 Sum_probs=68.4
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CC-ChhHHHHHHHHHH
Q 039931 508 NRGKLNEALKLEREMRQ----KGLLPD-NFTFNIIINGFCKQGRMKPAIDAFMDMYRT--GL--VP-DIVTYNTLIGGYC 577 (783)
Q Consensus 508 ~~g~~~~A~~l~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p-~~~~~~~li~~~~ 577 (783)
..|+++.|..+++.... .+..+. ..++..+...|...|++++|..++++.... +. .| ...++..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 44566666666555432 122222 345556666677777777777776665532 11 11 1345666677777
Q ss_pred HcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 578 KALDIVRADELVNKMYAG--GLD-P-D--ITTYNIRMHGYCNIRKMNQAAMMLDELV 628 (783)
Q Consensus 578 ~~g~~~~A~~~~~~m~~~--g~~-p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 628 (783)
..|++++|..++++.... .+. | . ...+..++..+...|++++|...|.+..
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 777777777777665541 111 1 1 2345555666667777777777766664
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=3.6e-05 Score=67.61 Aligned_cols=48 Identities=8% Similarity=-0.109 Sum_probs=35.1
Q ss_pred CCCCH-HHH----HHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 039931 666 FVPNV-VTT----NVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRA 714 (783)
Q Consensus 666 ~~p~~-~~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 714 (783)
+.|+. ..| .....++...|++++|+..+++++++.|+ |...+.-+..+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~-d~~~~~~~~~~ 145 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE-RKGETPGKERM 145 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-CCSCCTTHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 36755 567 77778888889999999999988888876 66555444443
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.94 E-value=0.00024 Score=60.84 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHH
Q 039931 107 LDALLHGYLRVEMSAEVMEILYRMREVGIMPSE---SAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPS--NYTFNALI 181 (783)
Q Consensus 107 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 181 (783)
+-.+...+.+.|++++|...|+++.+... .+. ..+..+...+.+.|++++|+..|+++++..|... ..++..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 44567788999999999999999988752 333 5788899999999999999999999999865322 66788899
Q ss_pred HHHHhcCChhhHHHHHHHHHhCC
Q 039931 182 LGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
.++...|++++|...|+++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999998764
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.91 E-value=8.4e-05 Score=79.90 Aligned_cols=124 Identities=6% Similarity=-0.118 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPS--------------ESAITILFKSLLRVGDYGSVWKLFRDMIHLG 169 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 169 (783)
...+..+...|.+.|++++|...|+++++...... ...|+.+..++.+.|++++|+..|+++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45788899999999999999999999988753222 5889999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHh
Q 039931 170 PRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYAL 229 (783)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 229 (783)
+ .+..+|..+..+|...|++++|+..|++.++.. +.+..++..+...+.+.++.++|.
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6 678899999999999999999999999999875 456678888888888888887774
No 174
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.90 E-value=0.00018 Score=64.84 Aligned_cols=93 Identities=11% Similarity=0.051 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 039931 533 TFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGY 611 (783)
Q Consensus 533 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~ 611 (783)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.++. .| +...|..+..+|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 33334444444444444444444444321 113344444444444444444444444444442 22 234444444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 039931 612 CNIRKMNQAAMMLDELV 628 (783)
Q Consensus 612 ~~~g~~~~A~~~~~~m~ 628 (783)
...|++++|...|++.+
T Consensus 90 ~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 44444444444444444
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.90 E-value=8.6e-05 Score=61.53 Aligned_cols=101 Identities=11% Similarity=0.014 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CHHhHHH
Q 039931 137 PSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVA--DFFAYNI 214 (783)
Q Consensus 137 ~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ 214 (783)
.+...+..+...+.+.|++++|...|+++++..+ .+...+..+...+...|++++|...+++..+.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 3456778888999999999999999999999865 577889999999999999999999999999875 34 6888999
Q ss_pred HHHHHHhc-CCcchHhhhccchHHHHHHHHHCC
Q 039931 215 LINAYCIR-GQTSYALGKCGAGRMIFDMIQEEG 246 (783)
Q Consensus 215 li~~~~~~-g~~~~A~~~~~~a~~~~~~m~~~g 246 (783)
+...+.+. |++++| .+.+.......
T Consensus 82 l~~~~~~~~~~~~~A-------~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEA-------EIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHH-------HHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHH-------HHHHHHHhhcc
Confidence 99999999 999999 56777776654
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.002 Score=68.57 Aligned_cols=166 Identities=10% Similarity=-0.063 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHh----CCCCCC-HHH
Q 039931 429 FTVLLDGYFRIGDLIGAQSLWNELNRRK-IFPDA----VAFSAYINGLSKAGLVDEAYGVFLEMSR----IGFVPN-NFA 498 (783)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~ 498 (783)
+..++..|...|++++|.+.+..+...- ..++. ...+.+-..+...|+.++|..++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4455666666666666666666554321 01111 1122223333455677777777766543 222222 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--hh
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQK--GL--LP-DNFTFNIIINGFCKQGRMKPAIDAFMDMYRT----GLVPD--IV 567 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~--~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~ 567 (783)
+..+...+...|++++|..+++++... +. .+ ...++..++..|...|++++|..++++.... +.+|. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777777888888888877776542 11 11 2456777777888888888888888776532 11111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 568 TYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.+..+...+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666667777888888877766654
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.88 E-value=4.7e-05 Score=68.66 Aligned_cols=99 Identities=7% Similarity=-0.040 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC--------CC---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREV--------GI---------MPSESAITILFKSLLRVGDYGSVWKLFRDMIH 167 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------g~---------~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 167 (783)
..+......+.+.|++++|+..|.+.++. .. +.+...|..+..++.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 46788889999999999999999998876 10 22346788899999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 039931 168 LGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
..| .+...|..+..++...|++++|...|++..+..
T Consensus 92 ~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 92 REE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 876 678899999999999999999999999998864
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.85 E-value=2.5e-05 Score=80.26 Aligned_cols=151 Identities=11% Similarity=-0.122 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 039931 566 IVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNTLMNG 645 (783)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 645 (783)
...+..+...+.+.|++++|+..|++.++ +.|+... +...|+.+++...+. ...|..+...
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 34455666666677777777777777665 2344331 122333333332221 0134444433
Q ss_pred Hhh-ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHH
Q 039931 646 VCC-DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAE 723 (783)
Q Consensus 646 ~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~ 723 (783)
+.. +++++|+..++++++. .| +...|..+..+|...|++++|+..+++++++.|. +..++..|........+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 433 7888888888888873 45 4577888888899999999999999999998886 77777777776544456666
Q ss_pred HHHHHHhcCCCcchh
Q 039931 724 FFQETSEKSLFLDFL 738 (783)
Q Consensus 724 ~~~~~~~~~~~~~~~ 738 (783)
.++.++++++..+|.
T Consensus 317 ~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 317 KQKEMYKGIFKGKDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhCCCCC
Confidence 777777777776653
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.85 E-value=4.2e-05 Score=82.64 Aligned_cols=120 Identities=12% Similarity=-0.020 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 039931 108 DALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRN 187 (783)
Q Consensus 108 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 187 (783)
..+...|.+.|++++|.+.|+++++.. +.+..+|..+...+.+.|++++|++.|++.++..+ .+..++..+..++...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 334456678899999999999998876 45688899999999999999999999999999865 6778899999999999
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCCcchHhh
Q 039931 188 GCIRIGESLLHVMHKYMCVADFFAYNILINA--YCIRGQTSYALG 230 (783)
Q Consensus 188 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~ 230 (783)
|++++|.+.+++..+.. +.+...+..+..+ +.+.|++++|+.
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999988764 2344455555555 777888888854
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.84 E-value=0.00018 Score=77.22 Aligned_cols=79 Identities=10% Similarity=-0.096 Sum_probs=56.6
Q ss_pred HHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 039931 638 TYNTLMNGVCC-DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAY 715 (783)
Q Consensus 638 ~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y 715 (783)
.|..+...+.. +++++|+..++++++. .| +...|..+..+|.+.|++++|+..++++++++|. +..++..++.++
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 395 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34344333333 6777777777777763 34 4577888888999999999999999999999987 778898998887
Q ss_pred hhhh
Q 039931 716 HNIQ 719 (783)
Q Consensus 716 ~~~~ 719 (783)
...+
T Consensus 396 ~~~~ 399 (457)
T 1kt0_A 396 KKAK 399 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.84 E-value=6.1e-05 Score=67.90 Aligned_cols=109 Identities=8% Similarity=-0.120 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--------C-C-------CCCH-HHHHHHHHHHhh-ccHHHHHHHHHHHHHc
Q 039931 603 TYNIRMHGYCNIRKMNQAAMMLDELVSA--------G-I-------VPNT-VTYNTLMNGVCC-DILDRAIIIAAKLLKM 664 (783)
Q Consensus 603 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g-~-------~p~~-~~~~~li~~~~~-~~~~~A~~~~~~~~~~ 664 (783)
.+......+.+.|++++|+..|.+.++. . . .|.. ..|..+...+.. |++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3445555566666666666666555542 0 0 1222 233333333333 7788888888887773
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCH-HHHHHHHHH
Q 039931 665 AFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDE-TSYKIMDRA 714 (783)
Q Consensus 665 ~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~-~~~~~l~~~ 714 (783)
.| +...|..+..+|...|++++|+..++++++++|+ +. .....+..+
T Consensus 93 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~l~~~ 141 (162)
T 3rkv_A 93 --EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA-AASVVAREMKIV 141 (162)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHH
T ss_pred --CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 45 4467778888888999999999999999988876 55 444444443
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=3.6e-05 Score=64.98 Aligned_cols=87 Identities=11% Similarity=0.037 Sum_probs=69.4
Q ss_pred hcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhH
Q 039931 116 RVEMSAEVMEILYRMREVG--IMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIG 193 (783)
Q Consensus 116 ~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 193 (783)
..|++++|+..|+++++.+ -+.+..++..+...+.+.|++++|+..|+++++..| .+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 3578889999999998874 233456788899999999999999999999998876 5677888899999999999999
Q ss_pred HHHHHHHHhC
Q 039931 194 ESLLHVMHKY 203 (783)
Q Consensus 194 ~~~~~~m~~~ 203 (783)
...+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.83 E-value=0.00015 Score=61.51 Aligned_cols=91 Identities=18% Similarity=0.002 Sum_probs=48.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 039931 536 IIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNI 614 (783)
Q Consensus 536 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 614 (783)
.+...+.+.|++++|...|++.++.. +.+...|..+..++...|++++|+..+++.++ +.| +...+..+..+|...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 33444555555555555555555431 12445555555555555555555555555554 233 344555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 039931 615 RKMNQAAMMLDELVS 629 (783)
Q Consensus 615 g~~~~A~~~~~~m~~ 629 (783)
|++++|+..+++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.80 E-value=0.0001 Score=65.86 Aligned_cols=131 Identities=12% Similarity=0.051 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChhH
Q 039931 499 YNSLIAGFCNRGKLNEALKLEREMRQKGLL-PD----NFTFNIIINGFCKQGRMKPAIDAFMDMYRT----GLVP-DIVT 568 (783)
Q Consensus 499 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~ 568 (783)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +-.+ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444455555555555555544332000 01 134555556666666666666666665432 1000 1334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYAG----GLDP-DITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++.++
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555666666667777776666665541 1111 123455666667777777777777766553
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.79 E-value=5.9e-05 Score=67.48 Aligned_cols=141 Identities=13% Similarity=0.042 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIM-PS----ESAITILFKSLLRVGDYGSVWKLFRDMIHLGPR-PSNYTFN 178 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 178 (783)
.++..+...|...|++++|+..+++.++.... ++ ..++..+...+...|++++|...|++.++.... ++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---- 85 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---- 85 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc----
Confidence 45666666777777777777777666543110 11 023444555555555555555555554432110 000
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCC-CChHHHHHH
Q 039931 179 ALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLS-PNVVVYNAL 257 (783)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l 257 (783)
.....++..+...+...|++++|+..++++..+.... +.. ....++..+
T Consensus 86 ---------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l 135 (164)
T 3ro3_A 86 ---------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---KDRIGEGRACWSL 135 (164)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc---cchHhHHHHHHHH
Confidence 0002234444444555555555543333333332221 100 113456666
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 039931 258 LNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~m~~ 279 (783)
...+...|++++|.+.+++..+
T Consensus 136 a~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 136 GNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 7777777888888777777654
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=0.0011 Score=72.94 Aligned_cols=165 Identities=7% Similarity=-0.062 Sum_probs=116.3
Q ss_pred ChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 546 RMKPAIDAFMDMYRTGLVP-DIVTYNTLIGGYCKALD----------IVRADELVNKMYAGGLDPDITTYNIRMHGYCNI 614 (783)
Q Consensus 546 ~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 614 (783)
..++|++.++++++. .| +..+|+.--..+...|+ ++++++.++++.+.. +-+..+|+.-..++.+.
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 345667777777774 34 45566665555655666 788888888888732 23667788888888888
Q ss_pred C--CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh-c-cHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc-----
Q 039931 615 R--KMNQAAMMLDELVSAGIVPN-TVTYNTLMNGVCC-D-ILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQ----- 683 (783)
Q Consensus 615 g--~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~-~-~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~----- 683 (783)
| +++++++.++++++. .|. ...|+.-...+.. + ..+++++.+.++++. .| |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhccccc
Confidence 8 668888888888873 333 3444433322222 4 678888888888773 35 557787776666653
Q ss_pred ---------CChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhh
Q 039931 684 ---------GMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNI 718 (783)
Q Consensus 684 ---------g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~ 718 (783)
+.+++|+++++++++++|+ |..+|..+.+.+.+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRA 239 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcC
Confidence 5679999999999999998 999999999988653
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.73 E-value=0.00034 Score=61.47 Aligned_cols=98 Identities=9% Similarity=-0.029 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC------CHH-----HHHHHHHHHHhcCChhHHHHHHHHHHhc-----
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMREVGIMP------SES-----AITILFKSLLRVGDYGSVWKLFRDMIHL----- 168 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~------~~~-----~~~~ll~~l~~~g~~~~A~~~~~~~~~~----- 168 (783)
..+..+...+.+.|++++|+..|++.++..... +.. .|+.+..++.+.|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 356677778888999999999999988875321 222 7888888888999999999988888886
Q ss_pred --CCCCCHHHH----HHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 169 --GPRPSNYTF----NALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 169 --~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
.| .+...| .....++...|++++|+..|++.++.
T Consensus 92 e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55 455577 88888888888888888888887653
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.72 E-value=0.00012 Score=76.18 Aligned_cols=121 Identities=7% Similarity=0.001 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----------------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRMRE----------------VGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
..+..+...|.+.|++++|+..|+++++ .. +.+..+|+.+...+.+.|++++|+..++++++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 4578889999999999999999999886 22 234567888999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchH
Q 039931 169 GPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYA 228 (783)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 228 (783)
.+ .+...+..+..++...|++++|+..|++..+.. +.+...+..+...+.+.++.+++
T Consensus 303 ~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 DP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 75 578899999999999999999999999998864 34667777777777776666655
No 189
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.68 E-value=0.0009 Score=57.08 Aligned_cols=100 Identities=10% Similarity=-0.100 Sum_probs=57.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-HHHHHHHHHHh-hccHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 039931 607 RMHGYCNIRKMNQAAMMLDELVSAG-IVPNT-VTYNTLMNGVC-CDILDRAIIIAAKLLKMAFVPN----VVTTNVLLSH 679 (783)
Q Consensus 607 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-~~~~~li~~~~-~~~~~~A~~~~~~~~~~~~~p~----~~~~~~ll~~ 679 (783)
+...+...|++++|...|++.++.. -.|.. ..+..+...+. .|++++|...++++++. .|+ ...+..+...
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHH
Confidence 3445555666666666666655421 11110 12222222222 25666666666666552 233 3456667777
Q ss_pred HHhcCChhhHHHHHHHHhhcCCCCCHHHHH
Q 039931 680 FCKQGMPEKTLLWGQKLSEISFDFDETSYK 709 (783)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~ 709 (783)
+.+.|++++|+..++++.+..|+ +..+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 114 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPG-SDAARV 114 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-SHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-ChHHHH
Confidence 88899999999999999888876 554443
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.67 E-value=0.00024 Score=73.79 Aligned_cols=77 Identities=12% Similarity=-0.044 Sum_probs=57.8
Q ss_pred HHHHHHHHHhh-ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 039931 638 TYNTLMNGVCC-DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAY 715 (783)
Q Consensus 638 ~~~~li~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y 715 (783)
.|..+...+.. +++++|+..++++++ +.| +...|..+..+|...|++++|+..+++++++.|. +..++..+..++
T Consensus 275 ~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~ 351 (370)
T 1ihg_A 275 CVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34444444433 778888888888877 445 4467778888899999999999999999999987 777888877776
Q ss_pred hh
Q 039931 716 HN 717 (783)
Q Consensus 716 ~~ 717 (783)
..
T Consensus 352 ~~ 353 (370)
T 1ihg_A 352 QK 353 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.65 E-value=0.00013 Score=78.36 Aligned_cols=133 Identities=13% Similarity=-0.011 Sum_probs=104.8
Q ss_pred HHHhcCChhHHHHHHHHHHhc-----CCC-CC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-CCC-HHhHH
Q 039931 148 SLLRVGDYGSVWKLFRDMIHL-----GPR-PS-NYTFNALILGFCRNGCIRIGESLLHVMHKY-----MC-VAD-FFAYN 213 (783)
Q Consensus 148 ~l~~~g~~~~A~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~-~~~~~ 213 (783)
.+..+|++++|..++++.++. |+. |+ ..+++.|..+|...|++++|..++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999998764 321 22 347999999999999999999999987642 31 233 46789
Q ss_pred HHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 039931 214 ILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR 280 (783)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 280 (783)
.|...|...|++++|+..+++|..+++.......+....+.+.+-..+...+.+++|..+|.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888766444333455666778888889999999999998763
No 192
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.64 E-value=0.0004 Score=74.96 Aligned_cols=117 Identities=12% Similarity=-0.001 Sum_probs=67.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 039931 331 LCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEA 410 (783)
Q Consensus 331 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 410 (783)
+.+.|++++|.+.|++..+..+. +..+|..+..+|.+.|++++|++.+++..+.. +.+..++..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 44556666666666666665332 46666666666667777777777776666653 22455666666666667777777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHH
Q 039931 411 WDLLCKMIEKGFPINKVAFTVLLDG--YFRIGDLIGAQSLWN 450 (783)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 450 (783)
.+.+++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777666665322 33344444444 566666666666665
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.64 E-value=8.6e-05 Score=65.07 Aligned_cols=88 Identities=8% Similarity=-0.043 Sum_probs=60.8
Q ss_pred ccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCh----------hhHHHHHHHHhhcCCCCCHHHHHHHHHHHhh
Q 039931 649 DILDRAIIIAAKLLKMAFVP-NVVTTNVLLSHFCKQGMP----------EKTLLWGQKLSEISFDFDETSYKIMDRAYHN 717 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~----------~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~ 717 (783)
+.+++|++.+++.++ +.| +...|..+..++...|++ ++|+..++++++++|+ +..+|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 456777777777766 334 445666666666666553 4888888888888876 77778888888765
Q ss_pred hh----------HHHHHHHHHHhcCCCcchhh
Q 039931 718 IQ----------ENAEFFQETSEKSLFLDFLM 739 (783)
Q Consensus 718 ~~----------~~~~~~~~~~~~~~~~~~~~ 739 (783)
.+ ++++.+.+.++++++++|..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 43 57777777778877777754
No 194
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.57 E-value=0.00011 Score=61.81 Aligned_cols=84 Identities=13% Similarity=0.093 Sum_probs=50.2
Q ss_pred cCChHHHHHHHHHHHHcCC-CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 039931 544 QGRMKPAIDAFMDMYRTGL-VP-DIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQA 620 (783)
Q Consensus 544 ~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A 620 (783)
.|++++|+..|++.++.+. .| +...+..+...|...|++++|++.+++.++. .| +...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4566666666666665321 12 3455666666666777777777777776663 33 456666666777777777777
Q ss_pred HHHHHHHHH
Q 039931 621 AMMLDELVS 629 (783)
Q Consensus 621 ~~~~~~m~~ 629 (783)
...+++.++
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766664
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.54 E-value=0.003 Score=69.43 Aligned_cols=170 Identities=6% Similarity=-0.068 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-
Q 039931 407 LPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGD----------LIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAG- 475 (783)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g- 475 (783)
.++|++.+++++...+. +..+|+.--..+...|+ ++++++.++.+.+..++ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34566777776666443 45555555555555555 66777777777666554 6666666666666666
Q ss_pred -ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 039931 476 -LVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRG-KLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQ--------- 544 (783)
Q Consensus 476 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~--------- 544 (783)
+++++++.++++.+.. +-|...|+.-...+.+.| .++++++.++++++..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 5577777777776653 335556666666666666 667777777777666544 666666665555542
Q ss_pred -----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC
Q 039931 545 -----GRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALD 581 (783)
Q Consensus 545 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 581 (783)
+.++++++.+++++... +-|...|..+-..+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566666666666532 2245556655555555544
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00052 Score=56.71 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC------HHhHH
Q 039931 140 SAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVAD------FFAYN 213 (783)
Q Consensus 140 ~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~ 213 (783)
..+..+...+.+.|++++|++.|++.++..| .+...+..+..++...|++++|+..+++..+.. +.+ ...+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHH
Confidence 3444555555555555555555555555443 344555555555555555555555555555442 111 33344
Q ss_pred HHHHHHHhcCCcchH
Q 039931 214 ILINAYCIRGQTSYA 228 (783)
Q Consensus 214 ~li~~~~~~g~~~~A 228 (783)
.+..++...|+.+.|
T Consensus 83 ~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 83 RLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhHhhh
Confidence 444444455555444
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.49 E-value=0.00081 Score=53.08 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
...+..+...|.+.|++++|...|++.++.. +.+..++..+...+.+.|++++|+..|++.++..| .+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3456667777777777777777777776654 34566667777777777777777777777776654 345555555555
Q ss_pred HHh
Q 039931 184 FCR 186 (783)
Q Consensus 184 ~~~ 186 (783)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.48 E-value=0.00026 Score=62.03 Aligned_cols=99 Identities=8% Similarity=0.061 Sum_probs=81.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039931 115 LRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDY----------GSVWKLFRDMIHLGPRPSNYTFNALILGF 184 (783)
Q Consensus 115 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (783)
.+.+++++|++.+++..+.+ +.+...|+.+..++...+++ ++|+..|++.++..| .+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHHHHHHHH
Confidence 45567899999999999887 67888999899999888775 499999999999876 5777899999999
Q ss_pred HhcC-----------ChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 039931 185 CRNG-----------CIRIGESLLHVMHKYMCVADFFAYNILIN 217 (783)
Q Consensus 185 ~~~g-----------~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (783)
...| ++++|+..|++.++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8875 899999999999886 477666554443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00062 Score=56.25 Aligned_cols=96 Identities=9% Similarity=0.098 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-C----HHHH
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRP-S----NYTF 177 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~ 177 (783)
+...+..+...+.+.|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++.++..|.. + ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34678889999999999999999999999886 5678889999999999999999999999999876532 1 5566
Q ss_pred HHHHHHHHhcCChhhHHHHHHH
Q 039931 178 NALILGFCRNGCIRIGESLLHV 199 (783)
Q Consensus 178 ~~l~~~~~~~g~~~~A~~~~~~ 199 (783)
..+..++...|+.+.|...+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 6677777777777776655543
No 200
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.43 E-value=0.00038 Score=71.41 Aligned_cols=130 Identities=8% Similarity=-0.067 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHhcCChhHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSES------------------AITILFKSLLRVGDYGSVWKLFRDM 165 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~------------------~~~~ll~~l~~~g~~~~A~~~~~~~ 165 (783)
...+..+...+.+.|++++|...|+++++.. |+.. .|+.+...+.+.|++++|+..|++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3467888889999999999999999988764 4432 7888999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCCcchHhhhccchHHHHHHHHH
Q 039931 166 IHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYC-IRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
++..+ .+...|..+..+|...|++++|...|++..+.. +.+...+..+..... ..+..+++ +..+..|..
T Consensus 257 l~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a-------~~~~~~~l~ 327 (338)
T 2if4_A 257 LTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ-------KEMYKGIFK 327 (338)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhC
Confidence 99865 678899999999999999999999999998654 234445555544422 22333333 455665544
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.36 E-value=0.00048 Score=73.87 Aligned_cols=131 Identities=5% Similarity=-0.159 Sum_probs=91.5
Q ss_pred HHHhcCChhhHHHHHHHHHhC-----CC-CCC-HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHH
Q 039931 183 GFCRNGCIRIGESLLHVMHKY-----MC-VAD-FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYN 255 (783)
Q Consensus 183 ~~~~~g~~~~A~~~~~~m~~~-----g~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~ 255 (783)
.+...|++++|..++++.++. |. .|+ ..+++.|..+|...|++++|+..++++..+.+.......+-...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999987653 21 122 45899999999999999999988888888888776544433457799
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC-----CCC-CCH-hHHHHHHHHHHccCChhHHHHHHHHHH
Q 039931 256 ALLNGYVKARDIDQANMLYEEMRSR-----DIA-PDA-VTFNIIVSGHCKYGGMEDGDRLLRDLS 313 (783)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~ 313 (783)
.|...|...|++++|..++++..+. |.. |++ .+.+.+-.++...+.+++|+.++..+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987652 321 121 123333334444455555555555443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.35 E-value=0.0011 Score=55.45 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 039931 122 EVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMH 201 (783)
Q Consensus 122 ~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 201 (783)
+|+..|+++++.+ +.+...+..+...+.+.|++++|+..|++.++..+ .+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666655 44566677777777777777777777777777654 455667777777777777777777777665
Q ss_pred h
Q 039931 202 K 202 (783)
Q Consensus 202 ~ 202 (783)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.30 E-value=0.0013 Score=54.93 Aligned_cols=76 Identities=13% Similarity=-0.003 Sum_probs=65.7
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 94 CDDFHLFGSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
.......|.++..+..+..+|.+.|++++|+..|++.++.+ +.+...|..+...+...|++++|...|++.++..+
T Consensus 9 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 9 EAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 33344457788999999999999999999999999999886 56678899999999999999999999999987543
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.29 E-value=0.0064 Score=52.64 Aligned_cols=88 Identities=13% Similarity=0.027 Sum_probs=36.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 039931 362 IIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCK----KGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYF 437 (783)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 437 (783)
|...|...+.+++|+++|++..+.| +...+..+...|.. .+++++|.+.|++..+.| ++..+..|...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333333344444444444444432 33333444444443 344444444444444432 2333444444444
Q ss_pred h----cCCHHHHHHHHHHHHhC
Q 039931 438 R----IGDLIGAQSLWNELNRR 455 (783)
Q Consensus 438 ~----~g~~~~A~~~~~~~~~~ 455 (783)
. .+++++|.+.|++..+.
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHC
Confidence 4 34444444444444443
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.26 E-value=0.0082 Score=51.96 Aligned_cols=108 Identities=11% Similarity=-0.054 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHH----cCCHHHHHH
Q 039931 512 LNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCK----ALDIVRADE 587 (783)
Q Consensus 512 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~ 587 (783)
+++|.+.|++..+.|. |+.. +...|...+.+++|++.|++..+.| +...+..|...|.. .+++++|.+
T Consensus 11 ~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4444444444444431 1211 3333334444444555555544432 33444444444444 445555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 039931 588 LVNKMYAGGLDPDITTYNIRMHGYCN----IRKMNQAAMMLDELVSA 630 (783)
Q Consensus 588 ~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 630 (783)
+|++..+. -+...+..|...|.. .++.++|...|++..+.
T Consensus 83 ~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555442 233444444444444 44555555555554443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.25 E-value=0.0025 Score=50.12 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 039931 138 SESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILIN 217 (783)
Q Consensus 138 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (783)
+...+..+...+...|++++|+..|++.++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 356788889999999999999999999998865 577889999999999999999999999998764 345667776666
Q ss_pred HHHhc
Q 039931 218 AYCIR 222 (783)
Q Consensus 218 ~~~~~ 222 (783)
.+.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.23 E-value=0.0012 Score=53.49 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 039931 101 GSDFRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL 168 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 168 (783)
|.++.++..+..+|.+.|++++|+..|+++++.+ +.+..+|..+...|.+.|++++|++.|++.++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566677777777777777777777777777765 345567777777777777777777777777653
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.97 E-value=0.0032 Score=50.91 Aligned_cols=67 Identities=12% Similarity=-0.008 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 136 MPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
+.+...+..+...+.+.|++++|+..|+++++..| .+...|..+..++...|++++|...+++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45678899999999999999999999999999876 46678999999999999999999999988753
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.46 E-value=0.0071 Score=48.53 Aligned_cols=60 Identities=12% Similarity=0.228 Sum_probs=42.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 110 LLHGYLRVEMSAEVMEILYRMREVGIMPSES-AITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 110 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
....+.+.|++++|...|+++++.+ +.+.. .+..+...+...|++++|+..|++.++..|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3456667777777777777777765 34556 777777777777777777777777777665
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.41 E-value=0.015 Score=46.52 Aligned_cols=77 Identities=14% Similarity=0.059 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHHHHHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPN-VV-TTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQENAEFFQ 726 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~-~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~~~~~~ 726 (783)
+++++|+..++++++. .|+ .. .|..+...|...|++++|++.++++++++|+ +..++.. ..+..+.
T Consensus 14 ~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~---------~~~~~a~ 81 (99)
T 2kc7_A 14 GDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR---------KMVMDIL 81 (99)
T ss_dssp TCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH---------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH---------HHHHHHH
Confidence 7888899999888873 454 46 7888888899999999999999999999987 5555411 3444455
Q ss_pred HHHhcCCCcch
Q 039931 727 ETSEKSLFLDF 737 (783)
Q Consensus 727 ~~~~~~~~~~~ 737 (783)
..++++...+|
T Consensus 82 ~~~~~~~~~~p 92 (99)
T 2kc7_A 82 NFYNKDMYNQL 92 (99)
T ss_dssp HHHCCTTHHHH
T ss_pred HHHHHHhccCc
Confidence 55666665554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.31 E-value=0.037 Score=55.72 Aligned_cols=75 Identities=11% Similarity=-0.097 Sum_probs=51.8
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 039931 563 VPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNTVTYNT 641 (783)
Q Consensus 563 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 641 (783)
+.+..+|..+...+...|++++|...+++++.. .|+...|..+...+.-.|++++|.+.|++... +.|...||..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 345667777666666667788888777777774 36766676777777777888888777777765 3566555533
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.29 E-value=0.01 Score=62.45 Aligned_cols=94 Identities=4% Similarity=-0.161 Sum_probs=74.6
Q ss_pred hcCChhhHHHHHHHHHhC---CCCCC----HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHH
Q 039931 186 RNGCIRIGESLLHVMHKY---MCVAD----FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALL 258 (783)
Q Consensus 186 ~~g~~~~A~~~~~~m~~~---g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 258 (783)
..|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.+++++..++++......+-...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887652 12222 36789999999999999999988888888888776544333346799999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 039931 259 NGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~ 279 (783)
..|...|++++|..+|++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.27 E-value=0.03 Score=44.32 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 101 GSDFRVLDALLHGYLRVEM---SAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
|.++.++..+..++...+. .++|...|++.++.+ +.++.+...+...+.+.|++++|+..|+++++..+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4556666666666654433 567777777777665 45666666667777777777777777777766554
No 214
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.15 E-value=2.6 Score=48.05 Aligned_cols=264 Identities=13% Similarity=0.050 Sum_probs=123.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHH
Q 039931 330 GLCWAGRLDEAMEFFEDMFEKG--ISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGL-------TPSSCTCSSLLVG 400 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~~~~~li~~ 400 (783)
+....|+.++++.+++..+..+ -.+.+..-..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556677777777666655421 112223333344445555555566666655544210 0111112223333
Q ss_pred HHhcCC-hhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 039931 401 LCKKGR-LPEAWDLLCKMIEKGFPINK--VAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLV 477 (783)
Q Consensus 401 ~~~~g~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 477 (783)
+.-.|. -+++.+.+..++...-. .. ..--++...+.-.|+-+....+++.+.+.. .-++.-...+.-++.-.|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 333332 23445555555443211 11 111223333445566666666666655531 11122222233334456777
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 039931 478 DEAYGVFLEMSRIGFVPNNF-AYN---SLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDA 553 (783)
Q Consensus 478 ~~A~~~~~~m~~~~~~p~~~-~~~---~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 553 (783)
+.+..+.+.+... .+.. -|. ++.-+|+..|+.....++++.+.... ..++.....+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777776666653 2222 222 23334556677666666777766542 22333333333344445666666666
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHH
Q 039931 554 FMDMYRTGLVPDIVTYNTLIGGYCKALDI-VRADELVNKMYAGGLDPDITT 603 (783)
Q Consensus 554 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~ 603 (783)
++.+.+.+ .|.+..-.++.-+....|.. .++.+++..+.. .+|..+
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~V 663 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFV 663 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHH
Confidence 66555543 34444333444444444443 566777777764 455443
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.13 E-value=0.016 Score=60.94 Aligned_cols=99 Identities=8% Similarity=-0.182 Sum_probs=78.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCC---CCCC----HHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHH
Q 039931 181 ILGFCRNGCIRIGESLLHVMHKYM---CVAD----FFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVV 253 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~m~~~g---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~ 253 (783)
+..+.+.|++++|+.++++.++.. +.|+ ..+++.|..+|...|++++|+..++++..+++.......+-...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455668899999999999987542 2222 457899999999999999999888888888887765443333467
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 254 YNALLNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~m~~ 279 (783)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999998765
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.11 E-value=0.02 Score=60.22 Aligned_cols=100 Identities=7% Similarity=-0.115 Sum_probs=78.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc-----CCC-C-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----C-CCCC-HH
Q 039931 145 LFKSLLRVGDYGSVWKLFRDMIHL-----GPR-P-SNYTFNALILGFCRNGCIRIGESLLHVMHKY-----M-CVAD-FF 210 (783)
Q Consensus 145 ll~~l~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~-~~ 210 (783)
.+..+.++|++++|+..+++.++. |+. | -..+++.++.+|...|++++|..++++.+.. | ..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345567889999999999999864 221 1 2347899999999999999999999987642 3 1233 35
Q ss_pred hHHHHHHHHHhcCCcchHhhhccchHHHHHHHHH
Q 039931 211 AYNILINAYCIRGQTSYALGKCGAGRMIFDMIQE 244 (783)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~ 244 (783)
+++.|...|...|++++|+..+++|.++++....
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG 406 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 406 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999988888888887755
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.10 E-value=0.01 Score=57.20 Aligned_cols=87 Identities=18% Similarity=0.144 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhHH
Q 039931 650 ILDRAIIIAAKLLKMAFVPN---VVTTNVLLSHFCK-----QGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHNIQEN 721 (783)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~~~~~ 721 (783)
...+|...++++++ +.|+ -..|..+...|.+ -|+.++|.++++++++++|+.+..++..+++.|+..+++
T Consensus 178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 45677777888887 5677 3567777777777 389999999999999998864477787888888775677
Q ss_pred HHHHHHHHhcCCCcchh
Q 039931 722 AEFFQETSEKSLFLDFL 738 (783)
Q Consensus 722 ~~~~~~~~~~~~~~~~~ 738 (783)
.+.+++++++++..++-
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 88888888888877664
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.99 E-value=0.1 Score=52.55 Aligned_cols=71 Identities=14% Similarity=0.047 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTY 604 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 604 (783)
++.+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++... +.|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 44555555444444555555555555555542 5555555555555555666666655555554 34554443
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.97 E-value=0.3 Score=56.44 Aligned_cols=129 Identities=15% Similarity=0.105 Sum_probs=67.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 039931 465 SAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQ 544 (783)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 544 (783)
..++..+.+.|..++|+++.+.-. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555555666666666665442110 0122234556666666654322 2556666777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 039931 545 GRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMML 624 (783)
Q Consensus 545 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 624 (783)
|+++.|.+.|.++.. |..+...|...|+.+...++.+.....|- ++....+|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777776665532 23344444445555555555444444321 233334455556666665555
Q ss_pred HH
Q 039931 625 DE 626 (783)
Q Consensus 625 ~~ 626 (783)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.78 E-value=0.0073 Score=63.51 Aligned_cols=92 Identities=10% Similarity=0.032 Sum_probs=56.4
Q ss_pred cCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCC-HhHHHHHHH
Q 039931 222 RGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSR-----DI-APD-AVTFNIIVS 294 (783)
Q Consensus 222 ~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~t~~~ll~ 294 (783)
.|++++|+..++++..+.+............+++.|...|...|++++|..++++.++. |. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777776655555555444433222222467888888888888888888888887642 21 222 234666666
Q ss_pred HHHccCChhHHHHHHHHHH
Q 039931 295 GHCKYGGMEDGDRLLRDLS 313 (783)
Q Consensus 295 ~~~~~g~~~~A~~~~~~~~ 313 (783)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666665554
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.77 E-value=0.099 Score=45.15 Aligned_cols=89 Identities=13% Similarity=0.032 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhhHH
Q 039931 617 MNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC----DILDRAIIIAAKLLKMAFVP--NVVTTNVLLSHFCKQGMPEKTL 690 (783)
Q Consensus 617 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~ 690 (783)
+..+.+-|.+..+.|. ++..+.-.+-.++++ +..++|+.++++..+.. .| +...+..+.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666666666554 444443333333333 36778999998887753 35 2355556666899999999999
Q ss_pred HHHHHHhhcCCCCCHHHH
Q 039931 691 LWGQKLSEISFDFDETSY 708 (783)
Q Consensus 691 ~~~~~~~~~~~~~d~~~~ 708 (783)
++++++++++|+ +..+.
T Consensus 92 ~y~~~lL~ieP~-n~QA~ 108 (152)
T 1pc2_A 92 KYVRGLLQTEPQ-NNQAK 108 (152)
T ss_dssp HHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHhcCCC-CHHHH
Confidence 999999999987 55444
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.71 E-value=0.53 Score=54.30 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 039931 395 SSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKA 474 (783)
Q Consensus 395 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 474 (783)
..++..+.+.|..++|.++.+. .. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4555555666666666654421 10 1122345567777776664332 2566777777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 475 GLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQ 524 (783)
Q Consensus 475 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 524 (783)
++++.|.+.|..+.. |..+...+...|+.+...++-+....
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777766543 33444444445555554444443333
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.58 E-value=0.13 Score=40.47 Aligned_cols=68 Identities=7% Similarity=0.014 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 039931 136 MPSESAITILFKSLLRVGD---YGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
+.+...+..+..++...++ .++|..+|++.++..| .++.+...+...+...|++++|+..++++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5677888888888876665 7999999999999887 788899999999999999999999999999875
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.51 E-value=0.093 Score=45.30 Aligned_cols=87 Identities=13% Similarity=0.013 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhhHHH
Q 039931 120 SAEVMEILYRMREVGIMPSESAITILFKSLLRVG---DYGSVWKLFRDMIHLG-PRPSNYTFNALILGFCRNGCIRIGES 195 (783)
Q Consensus 120 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 195 (783)
...+.+-|.+..+.| +++..+...+..++++++ ++++++.+|++..+.+ |..+...+-.+.-++.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 445666777777777 478888888899999988 6679999999998876 31234455667777899999999999
Q ss_pred HHHHHHhCCCCCCH
Q 039931 196 LLHVMHKYMCVADF 209 (783)
Q Consensus 196 ~~~~m~~~g~~~~~ 209 (783)
.++.+++. .|+.
T Consensus 93 y~~~lL~i--eP~n 104 (152)
T 1pc2_A 93 YVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHH--CTTC
T ss_pred HHHHHHhc--CCCC
Confidence 99999886 4543
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.32 E-value=0.1 Score=50.28 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-C
Q 039931 547 MKPAIDAFMDMYRTGLVPD---IVTYNTLIGGYCKA-----LDIVRADELVNKMYAGGLDP--DITTYNIRMHGYCNI-R 615 (783)
Q Consensus 547 ~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~-g 615 (783)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++.++ +.| +..++......++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 45677777777774 565 55788888888884 899999999999988 567 367788888888884 8
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 039931 616 KMNQAAMMLDELVSAGIV--PNTVTYNTL 642 (783)
Q Consensus 616 ~~~~A~~~~~~m~~~g~~--p~~~~~~~l 642 (783)
+.++|.+.+++.+..+.. |+....+.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 899999999999887666 776555544
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.84 E-value=0.22 Score=40.14 Aligned_cols=66 Identities=11% Similarity=-0.013 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 039931 138 SESAITILFKSLLRVGDYGSVWKLFRDMIHLG------PRPSNYTFNALILGFCRNGCIRIGESLLHVMHKY 203 (783)
Q Consensus 138 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 203 (783)
+...|..|...+.+.|++..|...|+.+++.- ..+....+..+..++.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455566666666666666666666655431 1134455666666666777777777776666654
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.78 E-value=1.5 Score=36.44 Aligned_cols=139 Identities=13% Similarity=0.119 Sum_probs=73.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 039931 402 CKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAY 481 (783)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 481 (783)
.-.|.+++..++..+..... +..-+|-+|.-....-+-+-..++++.+-+. .| ...+|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 34566777777776666552 4445555555555555555555555544332 11 12233333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039931 482 GVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTG 561 (783)
Q Consensus 482 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 561 (783)
.-+-.+- .+.......++.....|+-+.-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.++.+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3332221 1233344445556666666666666666433 234566666666666666666666666666666665
Q ss_pred C
Q 039931 562 L 562 (783)
Q Consensus 562 ~ 562 (783)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.60 E-value=7.9e-05 Score=76.10 Aligned_cols=223 Identities=12% Similarity=0.091 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 039931 104 FRVLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILG 183 (783)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (783)
+.+|..|.+++.+.|++.+|+..|-+ ..|+..|..++....+.|.+++-+.++.-..+.. .++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 34566666666666655555543321 1233345555555555555555555544333321 222222345555
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 039931 184 FCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVK 263 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 263 (783)
|++.++..+-.+++. .||+.-...+.+-|...|.++.| +-+|. ++.-|..|...+.+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAA-------Kilys---------~isN~akLAstLV~ 182 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAA-------KLLYN---------NVSNFGRLASTLVH 182 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTS-------STTGG---------GSCCCTTTSSSSSS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHH-------HHHHH---------hCccHHHHHHHHHH
Confidence 555555433222221 24444444444555555555444 12222 22334445555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEF 343 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 343 (783)
.|++..|.+.-++. -++.||..+-.+|...+.+.-|.-.--.++-..-. ...++..|-..|-+++-+.+
T Consensus 183 L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 183 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITM 251 (624)
T ss_dssp CSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHH
Confidence 66666555443221 25567777777777777766654443333322111 11234456666777776766
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHc
Q 039931 344 FEDMFEKGISPSIFAFNSIIAAYSRA 369 (783)
Q Consensus 344 ~~~m~~~g~~p~~~~~~~li~~~~~~ 369 (783)
++.-... -....-.|+-|.-.|++-
T Consensus 252 lEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 252 LEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 6665532 112455566665555554
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.52 E-value=0.29 Score=39.46 Aligned_cols=68 Identities=12% Similarity=-0.002 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 039931 103 DFRVLDALLHGYLRVEMSAEVMEILYRMREVG------IMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGP 170 (783)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~ 170 (783)
+..-+-.|...+.+.|+++.|...|+.+++.- -.+....+..|..++.+.|+++.|+..++++++..|
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34456688899999999999999999987641 134567889999999999999999999999998766
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.21 E-value=1.1 Score=39.73 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=43.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039931 333 WAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWD 412 (783)
Q Consensus 333 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 412 (783)
..|+++.|.++.+++. +...|..|.......|+++-|.+.|....+ +..+.-.|...|+.+.-..
T Consensus 17 ~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455555555544431 444555555555555555555555554331 2223333444444444444
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 413 LLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNE 451 (783)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (783)
+-+.....|- ++.....+.-.|+++++.++|.+
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333321 22223334445555555555543
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.91 E-value=1.8 Score=38.37 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=57.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHH
Q 039931 506 FCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRA 585 (783)
Q Consensus 506 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 585 (783)
..+.|+++.|.++.+++ .+...|..|.+.....|+++-|.+.|.+... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34567777777666554 1566677777777777777777776665432 23344445556666665
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039931 586 DELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDE 626 (783)
Q Consensus 586 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 626 (783)
.++-+.....|- ++....++.-.|+++++.++|.+
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 555554444331 34444555566666666666644
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.37 E-value=0.68 Score=38.34 Aligned_cols=84 Identities=12% Similarity=-0.002 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhhHHH
Q 039931 120 SAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGS---VWKLFRDMIHLG-PRPSNYTFNALILGFCRNGCIRIGES 195 (783)
Q Consensus 120 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 195 (783)
...+.+-+.+....| .++..+--.+..+++++.+... ++.++++..+.+ |...-...-.+.-++.+.|++++|++
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 445556666666656 4788887788888998887766 889999988765 21233344556778889999999999
Q ss_pred HHHHHHhCC
Q 039931 196 LLHVMHKYM 204 (783)
Q Consensus 196 ~~~~m~~~g 204 (783)
.++.+++..
T Consensus 96 ~~~~lL~~e 104 (126)
T 1nzn_A 96 YVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998763
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.25 E-value=3.1 Score=34.56 Aligned_cols=137 Identities=14% Similarity=0.013 Sum_probs=65.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 039931 264 ARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEF 343 (783)
Q Consensus 264 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 343 (783)
.|..++..++..+.... .+..-||-+|--....-+-+-..++++.+-+. .| ...+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHHH
Confidence 45566666666665543 13333444444333333333333333333221 11 1223444444443
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 039931 344 FEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGF 422 (783)
Q Consensus 344 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 422 (783)
+-.+-. +....+..++.....|+-++-.+++..+... -+|+......+..+|.+.|+..+|.+++.+.-+.|.
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333221 3334445555556666666666666664332 245555555666666666666666666666666554
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.14 E-value=0.54 Score=38.93 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhhH
Q 039931 616 KMNQAAMMLDELVSAGIVPNTVTYNTLMNGVCC----DILDRAIIIAAKLLKMAFVP--NVVTTNVLLSHFCKQGMPEKT 689 (783)
Q Consensus 616 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~A 689 (783)
.+..+.+-|.+....|. |+..+--.+..++.+ ....+++.+++++...+ .| .......|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555554443 444332222223332 35667999998887753 24 223344555589999999999
Q ss_pred HHHHHHHhhcCCCCCHHHH
Q 039931 690 LLWGQKLSEISFDFDETSY 708 (783)
Q Consensus 690 ~~~~~~~~~~~~~~d~~~~ 708 (783)
+++++.+++..|. +..+.
T Consensus 94 ~~~~~~lL~~eP~-n~QA~ 111 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ-NNQAK 111 (126)
T ss_dssp HHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHhCCC-CHHHH
Confidence 9999999999987 55554
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.87 E-value=0.00019 Score=73.40 Aligned_cols=214 Identities=11% Similarity=0.025 Sum_probs=122.9
Q ss_pred CHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 039931 208 DFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAV 287 (783)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 287 (783)
...+|..|..+....|++.+|++.+-.| -|...|..+|....+.|.+++-++.+...++..- ++.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~ 117 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESY 117 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-------------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-------------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccc
Confidence 3456777778887778887776432111 3666777788888888888887777776665422 444
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------
Q 039931 288 TFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKG---------------- 351 (783)
Q Consensus 288 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------- 351 (783)
.=+.|+-+|++.+++.+-++++. .||..-...+.+-+...|.++.|.-+|..+.+-.
T Consensus 118 IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 118 VETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp TTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSST
T ss_pred cHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 55677778888777665444332 2444444555666666677776666665443311
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh
Q 039931 352 ----ISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEKGFPINKV 427 (783)
Q Consensus 352 ----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 427 (783)
-.-++.||-.+-.+|...+.+.-|.-.--.++-. |+ -...++..|...|.+++-+.+++.-... -.....
T Consensus 191 daArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmG 264 (624)
T 3lvg_A 191 DGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMG 264 (624)
T ss_dssp TTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHH
T ss_pred HHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHH
Confidence 0125556666666666666665554333222211 11 1223455566677777766666665532 123555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 039931 428 AFTVLLDGYFRIGDLIGAQSLWN 450 (783)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~ 450 (783)
.|+-|.-.|++- ++++..+.++
T Consensus 265 mFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHT
T ss_pred HHHHHHHHHHhc-CHHHHHHHHH
Confidence 666666666654 3444444333
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.77 E-value=1.3 Score=37.79 Aligned_cols=114 Identities=9% Similarity=0.033 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCH-HHHHHHHHHH------HhcCChhHHHHHHHHHHh
Q 039931 101 GSDFRVLDALLHGYLRVEMS------AEVMEILYRMREVGIMPSE-SAITILFKSL------LRVGDYGSVWKLFRDMIH 167 (783)
Q Consensus 101 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~~~~-~~~~~ll~~l------~~~g~~~~A~~~~~~~~~ 167 (783)
|.|+.+|-..+...-+.|++ ++.+.+|+++... ++|+. ..|...+..+ ...++.++|.++|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56777777777777777888 8888899888774 35542 1122222221 234799999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 039931 168 LGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILIN 217 (783)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (783)
.+-.. ...|.....--.+.|++..|.+++.+....+..| .....+.+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 64333 7788888888889999999999999999887443 444444443
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.08 E-value=3.1 Score=34.62 Aligned_cols=57 Identities=14% Similarity=-0.024 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPN--VVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSY 708 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 708 (783)
.+..+++.+++++.+.+ |. ...+..+.-|+.+.|++++|+++.+.+++..|+ +..+-
T Consensus 57 ~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~-N~QA~ 115 (134)
T 3o48_A 57 NDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT-CHHHH
T ss_pred HHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-CHHHH
Confidence 46779999999988755 52 355556666899999999999999999999987 55443
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.89 E-value=1.6 Score=37.23 Aligned_cols=103 Identities=11% Similarity=-0.010 Sum_probs=57.7
Q ss_pred CChHHHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHhH-HHHHHHH------HHccCChhHHHHHHHHHHhC
Q 039931 249 PNVVVYNALLNGYVKARDI------DQANMLYEEMRSRDIAPDAVT-FNIIVSG------HCKYGGMEDGDRLLRDLSVS 315 (783)
Q Consensus 249 p~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~t-~~~ll~~------~~~~g~~~~A~~~~~~~~~~ 315 (783)
-|..+|-..+...-+.|++ ++.+++|++.... ++|+... |...+.. +...++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3678888888888888998 8888899988774 5665321 1111111 11225555555555555443
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039931 316 GLLPNCTLYDITVAGLCWAGRLDEAMEFFEDMFEKGIS 353 (783)
Q Consensus 316 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 353 (783)
+-.- ..+|......-.+.|++..|.+++.+.+..++.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2222 444444444444555555555555555554444
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.18 E-value=25 Score=40.22 Aligned_cols=348 Identities=11% Similarity=0.057 Sum_probs=177.3
Q ss_pred HHHHHHHHhcCChhHH-HHH-HHHHHhCCCCCCHhHHHHH-HHHHHccCChhHHHHHHHHHHhCC--CCCcHHHHHHHHH
Q 039931 255 NALLNGYVKARDIDQA-NML-YEEMRSRDIAPDAVTFNII-VSGHCKYGGMEDGDRLLRDLSVSG--LLPNCTLYDITVA 329 (783)
Q Consensus 255 ~~li~~~~~~g~~~~A-~~~-~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~ 329 (783)
.++.+++...|--.+. +.. .+.+-+. . +-.-+.+. --+....|+.+++..+++.....+ -.+....-..+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 3455666666644332 221 1233332 1 22222322 235666788888887777765532 1222333344444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHH--HH--HH
Q 039931 330 GLCWAGRLDEAMEFFEDMFEKGI-------SPSIFAFNSIIAAYSRAGL-EENAFEAYKIMHQFGLTPSSCT--CS--SL 397 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~--~~--~l 397 (783)
+....|..+++..++...+...- .+....-.++.-+.+-.|. -+++.+.+..+.... +..+ .. ++
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalAL 496 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGM 496 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 56666665667776666554311 0112222333333333332 245556666555432 2111 12 23
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHH
Q 039931 398 LVGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLL--DGYFRIGDLIGAQSLWNELNRRKIFPDAVAFS---AYINGLS 472 (783)
Q Consensus 398 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~li~~~~ 472 (783)
...++..|+.+....++..+.+.. +..+...+. -++...|+.+.+..+.+.+... ..|. .-|. ++.-+|+
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~-vRygaa~alglAya 571 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESL-LRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTT
T ss_pred hhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhc
Confidence 333456677777777777766542 223333333 3444678888888888877763 1122 2222 2334667
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHH
Q 039931 473 KAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRM-KPAI 551 (783)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~ 551 (783)
..|+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+|+
T Consensus 572 GTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp TSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 7888777777888877641 2223333333334445677677777777666543 34444444444455555554 5677
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHcC---------CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHH
Q 039931 552 DAFMDMYRTGLVPDIVTYNTLIGGYCKAL---------DIVRADELVNKMYAG-GLDPDITTYNIRMHGYCNIRKMN 618 (783)
Q Consensus 552 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~ 618 (783)
..+..+.. .+|..+-..-+.++...| ++...++.+...... .-.++...-..+..+....|+-.
T Consensus 650 d~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 650 DVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp HHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred HHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 88888775 455555544444444333 344444444444432 22344555556667777666543
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.39 E-value=7.3 Score=32.82 Aligned_cols=58 Identities=14% Similarity=-0.034 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHH
Q 039931 649 DILDRAIIIAAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETS 707 (783)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~ 707 (783)
....+++.+++++...+-.-.......+.-++.+.|++++|+++.+.++++.|+ +..+
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~-n~QA 113 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQV 113 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC-CHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHH
Confidence 467799999999887431112234445555899999999999999999999987 5443
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.72 E-value=18 Score=37.70 Aligned_cols=163 Identities=12% Similarity=0.052 Sum_probs=91.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH--HH
Q 039931 535 NIIINGFCKQGRMKPAIDAFMDMYRT--GLVPD---IVTYNTLIGGYCKALDIVRADELVNKMYA----GGLDPDI--TT 603 (783)
Q Consensus 535 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~ 603 (783)
..|...|...|++.+|..++..+... |..+. ...+...+..|...+++.+|..++.++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45677788888888888888887632 21111 34566677788888888888888887642 2222322 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH-----HHhhccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 039931 604 YNIRMHGYCNIRKMNQAAMMLDELVSA-GIVPNTVTYNTLMN-----GVCCDILDRAIIIAAKLLKMAFVPNVVTTNVLL 677 (783)
Q Consensus 604 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~-----~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll 677 (783)
|...+..+...+++.+|.+.|.+..+. ...-|...+...+. .........--.+..+.....-.++...|..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 666778888888999888888877641 11223322222211 111111111111222222222235567788888
Q ss_pred HHHHhc--CChhhHHHHHHHHh
Q 039931 678 SHFCKQ--GMPEKTLLWGQKLS 697 (783)
Q Consensus 678 ~~~~~~--g~~~~A~~~~~~~~ 697 (783)
.+|... .+++...+.++..+
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHhchHhhhHHHHHHHHHHh
Confidence 877654 34555555544433
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.69 E-value=19 Score=35.24 Aligned_cols=81 Identities=6% Similarity=-0.003 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc---CChhHHHHHHHHHHhCCCCCcHHHHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKY---GGMEDGDRLLRDLSVSGLLPNCTLYDI 326 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ 326 (783)
+......+...|.+.|++.+|..-|-. |-.-|...+..++--+.+. |...++--.. -.+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHH
Confidence 667777888888888988888876641 1111345555555444333 4333322221 122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 039931 327 TVAGLCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 327 li~~~~~~g~~~~A~~~~~~m~~ 349 (783)
++ .|.-.|++..|..+|+...+
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHHH
Confidence 22 25567788888888776653
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.47 E-value=5.6 Score=44.39 Aligned_cols=44 Identities=14% Similarity=0.013 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhcCCCCCHHHHHHHHHHHhh
Q 039931 672 TTNVLLSHFCKQGMPEKTLLWGQKLSEISFDFDETSYKIMDRAYHN 717 (783)
Q Consensus 672 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~y~~ 717 (783)
-|..|.....+.+.++||.+.++..+... +++.++.-|+..|..
T Consensus 615 EWEiLGlla~RL~h~~EA~~a~~~~l~~R--Fs~ka~~kLLeiY~~ 658 (754)
T 4gns_B 615 EWELLGLIMLRTWHWEDAVACLRTSIVAR--FDPVSCQQLLKIYLQ 658 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHh
Confidence 36666666677778888888888877655 567777777777753
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.79 E-value=3.4 Score=42.46 Aligned_cols=71 Identities=8% Similarity=-0.047 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHHhHH
Q 039931 142 ITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHK-----YMCVADFFAYN 213 (783)
Q Consensus 142 ~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~ 213 (783)
...++..+...|++.+|+..+...+...| .+...|..++.++.+.|+..+|++.|++..+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34556666777777777777777776655 5666777777777777777777777776543 36777665543
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.60 E-value=8.8 Score=31.90 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=30.8
Q ss_pred CChhHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039931 564 PDIVTYNTLIGGYCKALD---IVRADELVNKMYAGGLDP--DITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT 636 (783)
Q Consensus 564 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 636 (783)
|+..+--.+..++.+..+ ..+++.+++.+.+.+ | ....+..|.-++.+.|++++|.+..+.+++ +.|+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 343443334444444333 223445555544422 2 123333444555555555555555555554 34443
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.12 E-value=12 Score=41.83 Aligned_cols=54 Identities=13% Similarity=-0.056 Sum_probs=40.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039931 399 VGLCKKGRLPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGDLIGAQSLWNELN 453 (783)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (783)
+.+...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34556788888888888877763 3367788888888888888888888877664
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.04 E-value=4.2 Score=41.77 Aligned_cols=133 Identities=12% Similarity=-0.050 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHhcCCCCCH
Q 039931 102 SDFRVLDALLHGYL---RVEMSAEVMEILYRMREV--GI-MPSESAITILFKSLLRVGDYG-SVWKLFRDMIHLGPRPSN 174 (783)
Q Consensus 102 ~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~--g~-~~~~~~~~~ll~~l~~~g~~~-~A~~~~~~~~~~~~~~~~ 174 (783)
.|...|..++..-. ..|+.+.|...+++++.. |. -++.. ...+- ....-+++.. .
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~-------~ 171 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK-------V 171 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH-------H
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH-------H
Confidence 45566777665433 458889999999888765 31 11110 01111 1112222221 1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChHH
Q 039931 175 YTFNALILGFCRNGCIRIGESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVVV 253 (783)
Q Consensus 175 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~~ 253 (783)
.+...++..+...|++++|...+..+.... +-+...+..+|.++.+.|+..+|+..|+..++.+.+-....+.|....
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 234556778889999999999999887664 568889999999999999999999988888777766666666665543
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.47 E-value=54 Score=34.10 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC--hhH
Q 039931 500 NSLIAGFCNRGKLNEALKLEREMRQK--GLLPD---NFTFNIIINGFCKQGRMKPAIDAFMDMYR----TGLVPD--IVT 568 (783)
Q Consensus 500 ~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~ 568 (783)
..|...+...|++.+|..++..+... |..+. ...+...+..|...+++..|..+++++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34566666777777777777776532 22211 23455566677777777777777776532 222222 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 569 YNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+...+..+...+++.+|.+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55666666677777777777766654
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.68 E-value=48 Score=32.39 Aligned_cols=26 Identities=4% Similarity=-0.041 Sum_probs=18.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 039931 425 NKVAFTVLLDGYFRIGDLIGAQSLWN 450 (783)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~ 450 (783)
++.....+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56667777777777777777766553
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.73 E-value=20 Score=28.01 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039931 476 LVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQK 525 (783)
Q Consensus 476 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 525 (783)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33455555666666666666666666666666666666666666665544
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.01 E-value=60 Score=32.01 Aligned_cols=81 Identities=6% Similarity=-0.036 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 039931 250 NVVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVA 329 (783)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 329 (783)
|......+...|.+.+++.+|..-|- .|-.+....|..++--+.+.+...++ +..+-.+++
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL- 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL- 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-
Confidence 56667777888999999988887773 23343446665555444443332222 222222233
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 039931 330 GLCWAGRLDEAMEFFEDMFE 349 (783)
Q Consensus 330 ~~~~~g~~~~A~~~~~~m~~ 349 (783)
.|.-.+++..|..+|+...+
T Consensus 196 ~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 25567788888887766554
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.73 E-value=43 Score=39.94 Aligned_cols=170 Identities=15% Similarity=0.032 Sum_probs=85.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039931 430 TVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNR 509 (783)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 509 (783)
..++..+.+.+..+.+.++..-... ++..--.+...+...|++++|.+.|.+... |+..+....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~---------- 879 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------
Confidence 3455556666666666554433221 343334445566777777777777765422 111111000
Q ss_pred CCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHHcCCHH
Q 039931 510 GKLNEALKLEREMRQKG--LLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPD----IVTYNTLIGGYCKALDIV 583 (783)
Q Consensus 510 g~~~~A~~l~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~ 583 (783)
..... +..+.... ...-..-|..++..+.+.|.++.+.++-...++..-.-+ ...|..+.+++...|+++
T Consensus 880 ~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye 955 (1139)
T 4fhn_B 880 AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFD 955 (1139)
T ss_dssp SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSG
T ss_pred hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHH
Confidence 00000 01111110 111234456666666667777776666665554321111 114666667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 039931 584 RADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAA 621 (783)
Q Consensus 584 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 621 (783)
+|...+-.+.... --......|+...|..|..+.-.
T Consensus 956 ~Ay~aL~~~pd~~--~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 956 AAHVALMVLSTTP--LKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp GGGHHHHHHHHSS--SCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHhCCCHH--HHHHHHHHHHHHHHhCCChhhhh
Confidence 7777776666532 23445556666666666655443
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=74.94 E-value=18 Score=28.26 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 039931 374 NAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEK 420 (783)
Q Consensus 374 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 420 (783)
+..+-+..+...++.|++....+.+++|.+.+++..|.++++-+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455555555566666666666666666666666666655544
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.47 E-value=13 Score=35.26 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=73.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCC
Q 039931 147 KSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYMC--VADFFAYNILINAYCIRGQ 224 (783)
Q Consensus 147 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~ 224 (783)
..+.+.|++++|++....-++..| .|...-..++..+|-.|+++.|..-++...+... .|-...|..+|.+=
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 456788889999988888888876 6777778888999999999999988888776531 12223444444431
Q ss_pred cchHhhhccchHHHHHHHHHCCCCCC----hHHHH-HHHHHHH--hcCChhHHHHHHHHHHhC
Q 039931 225 TSYALGKCGAGRMIFDMIQEEGLSPN----VVVYN-ALLNGYV--KARDIDQANMLYEEMRSR 280 (783)
Q Consensus 225 ~~~A~~~~~~a~~~~~~m~~~g~~p~----~~~~~-~li~~~~--~~g~~~~A~~~~~~m~~~ 280 (783)
..-.++...+-.|. ...|. .++.+.. ..|+.++|.++-+++.+.
T Consensus 79 ------------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 ------------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222222222221 12233 3444433 458899998888887653
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.40 E-value=20 Score=27.89 Aligned_cols=84 Identities=23% Similarity=0.145 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 039931 119 MSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLH 198 (783)
Q Consensus 119 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 198 (783)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.. +.||...|.+|- -.+.|-.+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 35566666666555432 1122222334567888999998887766 568888887664 346777788877777
Q ss_pred HHHhCCCCCCHHh
Q 039931 199 VMHKYMCVADFFA 211 (783)
Q Consensus 199 ~m~~~g~~~~~~~ 211 (783)
++...| +|....
T Consensus 94 ~la~sg-~p~~q~ 105 (116)
T 2p58_C 94 RLARSQ-DPRIQT 105 (116)
T ss_dssp HHTTCC-CHHHHH
T ss_pred HHHhCC-CHHHHH
Confidence 777666 343333
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.13 E-value=29 Score=32.85 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=71.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhhcc
Q 039931 575 GYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT----VTYNTLMNGVCCDI 650 (783)
Q Consensus 575 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~ 650 (783)
...+.|++++|++....-++.. +-|...-..|+..+|-.|+|+.|..-++...+ +.|+. .+|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHH-----
Confidence 3456788888888887777742 33677777788888888888888888887775 23443 355555543
Q ss_pred HHHHHHHHHHHHHcCCCC----CHHHH-HHHHHHH--HhcCChhhHHHHHHHHhhcCCC
Q 039931 651 LDRAIIIAAKLLKMAFVP----NVVTT-NVLLSHF--CKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 651 ~~~A~~~~~~~~~~~~~p----~~~~~-~~ll~~~--~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
...-.++..-+-.| ...-| ..++.+. ...|+.++|...-..+.+.-|.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 11112233222222 12223 3444444 4569999999888888776543
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.95 E-value=51 Score=39.31 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039931 326 ITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKG 405 (783)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 405 (783)
.++..+.+.+..+-+.++..-.. .+...-..+..+|...|++++|.+.|++... |+..+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~ 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------A 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------S
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------h
Confidence 34555666666666655443322 2445555667778888888888888876532 121111000 0
Q ss_pred ChhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHH
Q 039931 406 RLPEAWDLLCKMIEKG--FPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDA----VAFSAYINGLSKAGLVDE 479 (783)
Q Consensus 406 ~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~ 479 (783)
.... +..+.... ...-...|..++..+.+.+.++.+.++-....+....-+. ..|..+...+...|++++
T Consensus 881 ~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 0000 11111111 1122345677777777888888777777665543211121 257778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 039931 480 AYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALK 517 (783)
Q Consensus 480 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 517 (783)
|...+..+..... -...+..|+..+|..|..+.-..
T Consensus 957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhC
Confidence 8888888776543 34556677777777777655443
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.87 E-value=42 Score=28.27 Aligned_cols=69 Identities=10% Similarity=0.075 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 039931 136 MPSESAITILFKSLLRVGDY---GSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLHVMHKYM 204 (783)
Q Consensus 136 ~~~~~~~~~ll~~l~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 204 (783)
.|+..+--.+..+++++.+. .+++.++++..+.++...-...-.+.-++.+.|++++|++..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 46777777777788887754 4688888888887664344445556778889999999999999988863
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=72.59 E-value=8 Score=33.60 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=41.1
Q ss_pred CCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCH-------HHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 039931 134 GIMPSESA--ITILFKSLLRVGDYGSVWKLFRDMIHLG-PRPSN-------YTFNALILGFCRNGCIRIGESLLHVMHK 202 (783)
Q Consensus 134 g~~~~~~~--~~~ll~~l~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 202 (783)
|..|.-.. +-.-++.+...|.++.|+-+.+-++... ..|+. .++..+.+++...|++..|...|++.++
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44444333 3345677788888888887777655431 12331 2456677788888888888888887654
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.35 E-value=19 Score=27.97 Aligned_cols=85 Identities=19% Similarity=0.133 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 039931 119 MSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLLH 198 (783)
Q Consensus 119 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 198 (783)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.. +.||...|.+|- -.+.|-.+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 35566666665555432 1122222334567888998888877666 568888876654 357788888888887
Q ss_pred HHHhCCCCCCHHhH
Q 039931 199 VMHKYMCVADFFAY 212 (783)
Q Consensus 199 ~m~~~g~~~~~~~~ 212 (783)
++..+| +|....|
T Consensus 93 ~la~sg-~p~~q~F 105 (115)
T 2uwj_G 93 GLGGSS-DPALADF 105 (115)
T ss_dssp HHHTCS-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 777766 3443333
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.97 E-value=84 Score=30.96 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHH
Q 039931 530 DNFTFNIIINGFCKQGRMKPAIDAF 554 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~~~~A~~~~ 554 (783)
|+.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5666667777777777777777666
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=70.39 E-value=36 Score=28.24 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039931 476 LVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIII 538 (783)
Q Consensus 476 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 538 (783)
+.-+..+-++.+....+.|++......+.+|.+.+++..|.++|+-++.+ +.+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 33455556666666667777777777777777777777777777766654 222333455544
No 263
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.61 E-value=15 Score=35.12 Aligned_cols=12 Identities=8% Similarity=0.362 Sum_probs=4.9
Q ss_pred HHHHHHHCCCCC
Q 039931 238 IFDMIQEEGLSP 249 (783)
Q Consensus 238 ~~~~m~~~g~~p 249 (783)
+++.+.+.|..+
T Consensus 87 ~v~~Ll~~g~~~ 98 (285)
T 1wdy_A 87 LLKLFLSKGADV 98 (285)
T ss_dssp HHHHHHHTTCCT
T ss_pred HHHHHHHcCCCC
Confidence 334444444433
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.14 E-value=52 Score=34.04 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHH--H
Q 039931 532 FTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP--DIVTYNTLIGGYCKALDIVRADELVNKMYA---GGLDPDITT--Y 604 (783)
Q Consensus 532 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~--~ 604 (783)
.+...+...|.+.|++++|.+.+.++...-..+ -...+..++..+...+++..+...+++... .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356678888888888888888888887642222 245677778888888888888888887754 232333221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 605 NIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 605 ~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
..-+..+...+++.+|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122334566788888887777654
No 265
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=67.15 E-value=1.5e+02 Score=32.44 Aligned_cols=81 Identities=11% Similarity=-0.054 Sum_probs=41.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh---
Q 039931 257 LLNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCW--- 333 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 333 (783)
....+.-.|+++.|++.+-+. ...+.+.+...+.-+.- +.....++ .........-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gL---L~~~~~ll----s~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKL---FKIDSSTR----LTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCC---ccCCCccc----ccCCCcccccHHHHHHHHHHHhh
Confidence 445566689999999987754 23345555554443322 22111111 11000012235667777764
Q ss_pred cCCHHHHHHHHHHHH
Q 039931 334 AGRLDEAMEFFEDMF 348 (783)
Q Consensus 334 ~g~~~~A~~~~~~m~ 348 (783)
..+..+|.++|--+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 577888888877763
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.12 E-value=35 Score=35.35 Aligned_cols=97 Identities=11% Similarity=-0.123 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCChhH--HH
Q 039931 498 AYNSLIAGFCNRGKLNEALKLEREMRQK--GLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRT---GLVPDIVT--YN 570 (783)
Q Consensus 498 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~--~~ 570 (783)
+...+...|.+.|+++.|.+.+.++... +...-...+-.+|..+...+++..+...+.++... +-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677889999999999999999999875 33334567788889999999999999999887532 32333221 11
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 571 TLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 571 ~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
.-...+...+++.+|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111223467899999988887765
No 267
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=65.39 E-value=40 Score=29.28 Aligned_cols=114 Identities=10% Similarity=0.074 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhHHH
Q 039931 501 SLIAGFCNRGKLNEALKLEREMRQK-GLLPDN-------FTFNIIINGFCKQGRMKPAIDAFMDMYRTG--LVPDIVTYN 570 (783)
Q Consensus 501 ~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~ 570 (783)
.-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.++.. +.-+..++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3355556666777766666554332 112221 234455566666777777777776654321 110111111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 039931 571 TLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGYCNIRKMNQAAMMLDEL 627 (783)
Q Consensus 571 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 627 (783)
.+. ....... .....++...-.-+..+|.+.|++++|+.+++.+
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 110 0000000 0012223334344667888888888888887754
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.91 E-value=40 Score=26.25 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=20.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 541 FCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 541 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+.+.|++++|..+.+.. ..||...|.+|-.. +.|-.+++..-+.++..
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 34445555554444332 23444444444332 44444444444444433
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=63.73 E-value=37 Score=28.19 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 039931 375 AFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEK 420 (783)
Q Consensus 375 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 420 (783)
..+-++.+...++.|++....+.+++|.+.+++..|.++++-+..+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444445555556666666666666666666666666666665544
No 270
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=61.88 E-value=46 Score=34.37 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=17.9
Q ss_pred HHHHHHHHCCCCCChHH--HHHHHHHHHhcCChhHHHHHH
Q 039931 237 MIFDMIQEEGLSPNVVV--YNALLNGYVKARDIDQANMLY 274 (783)
Q Consensus 237 ~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~ 274 (783)
++++.+.+.|..|+... ..+.+...++.|+.+-+.-++
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 67 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 34555556666555321 123344445566655444333
No 271
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=59.45 E-value=36 Score=31.42 Aligned_cols=25 Identities=8% Similarity=-0.073 Sum_probs=13.3
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCC
Q 039931 182 LGFCRNGCIRIGESLLHVMHKYMCV 206 (783)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~m~~~g~~ 206 (783)
...+..|+.+....+++.+.+.|..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3345556666665565555544433
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=59.45 E-value=38 Score=26.30 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=19.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039931 541 FCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYA 594 (783)
Q Consensus 541 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 594 (783)
+.+.|++++|..+.+.. ..||...|.+|-.. +.|-.+++..-+.++..
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 33444444444433322 23444444443332 44444444444434433
No 273
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=57.75 E-value=8.8 Score=25.72 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHh
Q 039931 656 IIAAKLLKMAFVPNVVTTNVLLSHFCKQGM--PEKTLLWGQKLS 697 (783)
Q Consensus 656 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~--~~~A~~~~~~~~ 697 (783)
+.++.++++|+.++...+ ++.+.|+ ++.|++|+.++.
T Consensus 11 qmlq~L~eMGFd~erae~-----Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 11 QMLQELVNAGCDQEMAGR-----ALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHCCHHHHHH-----HHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHH-----HHHHhCcccHHHHHHHHHHhc
Confidence 345566777877765554 6677777 899999988874
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.32 E-value=75 Score=28.57 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=45.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 039931 579 ALDIVRADELVNKMYAGGLDPD-ITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPN 635 (783)
Q Consensus 579 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 635 (783)
.+...++.++|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4447788899999988776654 46678888888899999999999998888877783
No 275
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=52.07 E-value=53 Score=31.54 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=8.6
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 039931 328 VAGLCWAGRLDEAMEFFED 346 (783)
Q Consensus 328 i~~~~~~g~~~~A~~~~~~ 346 (783)
+...+..|..+-+..+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3334455555544444433
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=51.81 E-value=1.7e+02 Score=29.15 Aligned_cols=27 Identities=7% Similarity=0.326 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 039931 253 VYNALLNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 279 (783)
....+|.-|...++.++|...++++..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 345778889999999999999998753
No 277
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=51.33 E-value=46 Score=32.45 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 651 LDRAIIIAAKLLKMAFVPNV--VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 651 ~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
..+.+++..-+..-.+.|.. .+...-+....|.+++.-|..+.+++++++|.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 45556665556665677755 34556677789999999999999999999975
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.92 E-value=1.1e+02 Score=27.47 Aligned_cols=56 Identities=11% Similarity=-0.035 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 039931 509 RGKLNEALKLEREMRQKGLLP-DNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVP 564 (783)
Q Consensus 509 ~g~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 564 (783)
++...++..+|..|..+|+-- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344556777777776665532 34456666666667777777777777776665555
No 279
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.46 E-value=32 Score=31.62 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=4.0
Q ss_pred HHHHHCCCCC
Q 039931 240 DMIQEEGLSP 249 (783)
Q Consensus 240 ~~m~~~g~~p 249 (783)
+.+.+.|..+
T Consensus 93 ~~Ll~~g~~~ 102 (240)
T 3eu9_A 93 VQLMKYGADP 102 (240)
T ss_dssp HHHHHTTCCT
T ss_pred HHHHHcCCCC
Confidence 3334444433
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.31 E-value=68 Score=33.75 Aligned_cols=26 Identities=8% Similarity=0.303 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 039931 105 RVLDALLHGYLRVEMSAEVMEILYRM 130 (783)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 130 (783)
.++|.|++.|...+.++.|..+..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 45555556666666666665555554
No 281
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=47.77 E-value=3e+02 Score=29.83 Aligned_cols=246 Identities=11% Similarity=0.035 Sum_probs=134.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhHH----HHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 039931 265 RDIDQANMLYEEMRSRDIAPDAVTF----NIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTLYDITVAGLCWAGRLDEA 340 (783)
Q Consensus 265 g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 340 (783)
.+.+.|..++....+... .+.... ..+.......+...++...+........ +.....-.+....+.|+.+.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHH
Confidence 378999999988865432 233322 2233333344535566666666554332 333333344445577999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 039931 341 MEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKKGRLPEAWDLLCKMIEK 420 (783)
Q Consensus 341 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 420 (783)
...|+.|...... ......=+..++...|+.++|..+|+.+.+. . +|-.++ +..+.|..-.. . ..
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~l-Aa~~Lg~~~~~-~------~~ 369 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMV-AAQRIGEEYEL-K------ID 369 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHH-HHHHTTCCCCC-C------CC
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHH-HHHHcCCCCCC-C------CC
Confidence 9999988763211 2333344556778889999999999998752 2 333333 22233321100 0 00
Q ss_pred CCCC---CH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--
Q 039931 421 GFPI---NK---VAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGF-- 492 (783)
Q Consensus 421 ~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 492 (783)
...+ .. .....-+..+...|....|...+..+.+. .+......+.......|..+.++.........+.
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~ 446 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLE 446 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchh
Confidence 0000 00 01123345677889999999988887764 2334444555555677888877765544322210
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 039931 493 --VPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFT 533 (783)
Q Consensus 493 --~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 533 (783)
-| ..|..++..+++...++..+-.---..++++.|+..+
T Consensus 447 ~~~P--~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~S 487 (618)
T 1qsa_A 447 ERFP--LAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKVKS 487 (618)
T ss_dssp HHSC--CTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTCBC
T ss_pred hhCC--cchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCcC
Confidence 01 1355666666666656554433223345556665543
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.44 E-value=46 Score=31.54 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=4.9
Q ss_pred HHHHHhcCCHH
Q 039931 328 VAGLCWAGRLD 338 (783)
Q Consensus 328 i~~~~~~g~~~ 338 (783)
+...++.|+++
T Consensus 9 L~~A~~~g~~~ 19 (285)
T 1wdy_A 9 LIKAVQNEDVD 19 (285)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHcCCHH
Confidence 33344455544
No 283
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=46.26 E-value=2.5e+02 Score=28.41 Aligned_cols=93 Identities=10% Similarity=-0.059 Sum_probs=47.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHH----
Q 039931 536 IIINGFCKQGRMKPAIDAFMDMYRTGLVPD-----IVTYNTLIGGYCKALDIVRADELVNKMYAG--GLDPDITTY---- 604 (783)
Q Consensus 536 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~---- 604 (783)
.++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+...... .+.+++.+-
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 455666666666666666666654200111 223445555666667777766666655431 222333221
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHH
Q 039931 605 NIRMHGYC-NIRKMNQAAMMLDELV 628 (783)
Q Consensus 605 ~~li~~~~-~~g~~~~A~~~~~~m~ 628 (783)
..-.-.+. ..+++++|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11123344 5667777766665543
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.77 E-value=1.5e+02 Score=25.24 Aligned_cols=83 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039931 547 MKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDP-DITTYNIRMHGYCNIRKMNQAAMMLD 625 (783)
Q Consensus 547 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 625 (783)
++.+.+.|..-... +.|..-...-+.---...+ +.++|..|...|+-- -...|......+...|++++|.++|+
T Consensus 51 LErc~~~f~~~~~Y--knD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 51 LEHLMKEFLDKKKY--HNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHHTTCGGG--TTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccc--cCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHHHCCCCC
Q 039931 626 ELVSAGIVP 634 (783)
Q Consensus 626 ~m~~~g~~p 634 (783)
.-++.+-.|
T Consensus 126 ~Gi~~~A~P 134 (152)
T 4a1g_A 126 RGIQNQAEP 134 (152)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCcc
No 285
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.94 E-value=25 Score=33.10 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=45.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHH--hcCChhhHHHHHHHHHhCC---------CCCCH
Q 039931 148 SLLRVGDYGSVWKLFRDMIHLGPRPSNY-------TFNALILGFC--RNGCIRIGESLLHVMHKYM---------CVADF 209 (783)
Q Consensus 148 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g---------~~~~~ 209 (783)
..++.|+.+....+++.+...|...+.. -.+.|..+.. +.|+.+-+..+++.-...+ +....
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 3455666666666666555554444322 2233333221 5566666666666543211 00000
Q ss_pred HhHHHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChH
Q 039931 210 FAYNILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVV 252 (783)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~ 252 (783)
....+.+...+..|+. ++.+.+.+.|..++..
T Consensus 91 ~~g~t~L~~A~~~g~~-----------~~v~~Ll~~ga~~~~~ 122 (260)
T 3jxi_A 91 YRGQTALHIAIERRCK-----------HYVELLVEKGADVHAQ 122 (260)
T ss_dssp EESBCHHHHHHHTTCH-----------HHHHHHHHTTCCTTCC
T ss_pred cCCCCHHHHHHHcCCH-----------HHHHHHHhCCCCcCcc
Confidence 0122334445556664 3556666677766654
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.37 E-value=83 Score=31.40 Aligned_cols=61 Identities=15% Similarity=0.329 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcC
Q 039931 500 NSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGR--MKPAIDAFMDMYRTG 561 (783)
Q Consensus 500 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g 561 (783)
..++.-|...++.++|.+.++++..-... .......+..++-+.++ .+....++..+...|
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 44555666666666666666666432111 12233333444433322 233445555555544
No 287
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.35 E-value=40 Score=30.93 Aligned_cols=16 Identities=13% Similarity=-0.174 Sum_probs=8.0
Q ss_pred HHHHHHhcCChhHHHH
Q 039931 145 LFKSLLRVGDYGSVWK 160 (783)
Q Consensus 145 ll~~l~~~g~~~~A~~ 160 (783)
.+...++.|+.+-+..
T Consensus 45 ~L~~A~~~~~~~~v~~ 60 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKY 60 (240)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCHHHHHH
Confidence 3444556666544433
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.90 E-value=1.5e+02 Score=25.59 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 039931 583 VRADELVNKMYAGGLDPD-ITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVPNT 636 (783)
Q Consensus 583 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 636 (783)
+.+.++|..|...|+--. ...|......+...|++.+|.++|..-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 346778888888877654 466777888888899999999999988888878854
No 289
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.07 E-value=2.1e+02 Score=25.44 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHhcCC
Q 039931 530 DNFTFNIIINGFCKQGR 546 (783)
Q Consensus 530 ~~~~~~~li~~~~~~g~ 546 (783)
+...-...+.++.+.|.
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 43333344444444443
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.89 E-value=21 Score=33.67 Aligned_cols=56 Identities=13% Similarity=-0.058 Sum_probs=35.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhH-------HHHHHHHHH--ccCChhHHHHHHHHHH
Q 039931 258 LNGYVKARDIDQANMLYEEMRSRDIAPDAVT-------FNIIVSGHC--KYGGMEDGDRLLRDLS 313 (783)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~g~~~~A~~~~~~~~ 313 (783)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 4455677888888888887777666555332 233433332 6688777777776643
No 291
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=38.74 E-value=1.7e+02 Score=28.58 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCcchHhhhccchHHHHHHHHHCCCCCChH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 039931 213 NILINAYCIRGQTSYALGKCGAGRMIFDMIQEEGLSPNVV----VYNALLNGYVKARDIDQANMLYEEMRSRDIAPD 285 (783)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 285 (783)
++.+..-++.|+.+ +.+.+.+.|..+|.. -++. +...++.|+.+ +.+.+++.|..|+
T Consensus 26 ~t~L~~Av~~g~~~-----------~V~~LL~~Gadvn~~~~~~g~Tp-Lh~A~~~g~~~----iv~~Ll~~ga~~~ 86 (337)
T 4g8k_A 26 NHLLIKAVQNEDVD-----------LVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSRED----IVELLLRHGADPV 86 (337)
T ss_dssp HHHHHHHHHTTCHH-----------HHHHHHHHTCCTTCCCTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred ChHHHHHHHcCCHH-----------HHHHHHHCCCCCCccCCCCCcCH-HHHHHHcCCHH----HHHHHHHcCCchh
Confidence 44455556667654 444555566665532 1233 33445566654 4444555555443
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.44 E-value=1.2e+02 Score=24.96 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCC
Q 039931 325 DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGL--EENAFEAYKIMHQFGLT 388 (783)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 388 (783)
+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34556677777777777777776421111 12223333333333322 24455666666655543
No 293
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=37.18 E-value=3.4e+02 Score=27.39 Aligned_cols=58 Identities=16% Similarity=-0.031 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039931 361 SIIAAYSRAGLEENAFEAYKIMHQFGLTPS-----SCTCSSLLVGLCKKGRLPEAWDLLCKMI 418 (783)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~ 418 (783)
-++..|...|++.+|.+++..+.+.=-..| ...+..-+..|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 456667777777777776666654211111 1223444455666666666666666554
No 294
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.08 E-value=2.2e+02 Score=25.22 Aligned_cols=91 Identities=11% Similarity=0.036 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 039931 460 DAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIIN 539 (783)
Q Consensus 460 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 539 (783)
+...-...+.++.+.+..+ +...+..+.+ .++..+-...+.++.+.+..+ +...+..+.+ .++...-...+.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444444445555555432 3333333333 245555555555555555432 3333333332 235555555555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 039931 540 GFCKQGRMKPAIDAFMDMYR 559 (783)
Q Consensus 540 ~~~~~g~~~~A~~~~~~m~~ 559 (783)
++.+.+. .++...+..+.+
T Consensus 166 aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 166 ALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHhCc-hhHHHHHHHHHh
Confidence 5555554 344445555544
No 295
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.74 E-value=1.3e+02 Score=28.75 Aligned_cols=48 Identities=4% Similarity=-0.062 Sum_probs=23.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCChhHHHHHH
Q 039931 258 LNGYVKARDIDQANMLYEEMRSRDIAPDAVTFNIIVSGHCKYGGMEDGDRLL 309 (783)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~ 309 (783)
+...++.|+.+-+.. +.+.|..++...-.+.+...+..|+.+-+..++
T Consensus 35 L~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 35 SYYAIADNNVRLVCT----LLNAGALKNLLENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp HHHHHHTTCHHHHHH----HHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 344455666654443 344454444332233444555666665444443
No 296
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.15 E-value=2.2e+02 Score=24.95 Aligned_cols=9 Identities=0% Similarity=-0.049 Sum_probs=3.4
Q ss_pred HHHHHHHhc
Q 039931 536 IIINGFCKQ 544 (783)
Q Consensus 536 ~li~~~~~~ 544 (783)
..+.++.+.
T Consensus 157 ~A~~aL~~~ 165 (201)
T 3ltj_A 157 SAADALGEI 165 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 333333333
No 297
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=35.52 E-value=2.3e+02 Score=24.88 Aligned_cols=80 Identities=10% Similarity=0.020 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 039931 494 PNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLI 573 (783)
Q Consensus 494 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 573 (783)
++..+-...+.++.+.++.+ +...+..+.. .++...-...+.++.+.|.. ++...+..+.. .++...-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 44444444444444444432 2222222222 23444444444455444432 23333333332 23444444444
Q ss_pred HHHHHcCC
Q 039931 574 GGYCKALD 581 (783)
Q Consensus 574 ~~~~~~g~ 581 (783)
.++...|.
T Consensus 160 ~aL~~~~~ 167 (201)
T 3ltj_A 160 DALGEIGG 167 (201)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCc
Confidence 44444443
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.44 E-value=1.1e+02 Score=26.60 Aligned_cols=50 Identities=12% Similarity=0.315 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 039931 236 RMIFDMIQEEGLSPN-VVVYNALLNGYVKARDIDQANMLYEEMRSRDIAPD 285 (783)
Q Consensus 236 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 285 (783)
..+|..|...|+-.. ...|..-...+-..|++.+|.++|+.-++++..|-
T Consensus 80 ~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 80 LDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 456666666655433 23455555556666666666666666666655554
No 299
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=35.41 E-value=3.2e+02 Score=26.55 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHhhcCCC
Q 039931 652 DRAIIIAAKLLKMAFVPNV--VTTNVLLSHFCKQGMPEKTLLWGQKLSEISFD 702 (783)
Q Consensus 652 ~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (783)
.+.+++..-+..-.+.|.+ .+...-++...|.+++.-|..+.+++++++|.
T Consensus 178 kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 178 KRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4445555555555567755 34555566789999999999999999999865
No 300
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.31 E-value=4.8e+02 Score=28.52 Aligned_cols=80 Identities=11% Similarity=0.001 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh-
Q 039931 431 VLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGF-VPNNFAYNSLIAGFCN- 508 (783)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~- 508 (783)
.....+.-.|+++.|.+.+-.. ...|.+.+...+.. .|-.... +.+..... .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~---~gLL~~~----~~lls~~~~~~-~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLAS---LKLFKID----SSTRLTKKPKR-DIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHH---TTC----------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHH---cCCccCC----CcccccCCCcc-cccHHHHHHHHHHH
Confidence 3455666788888888877644 12244444443333 2322221 11111100 11 2336677777764
Q ss_pred --cCCHHHHHHHHHHH
Q 039931 509 --RGKLNEALKLEREM 522 (783)
Q Consensus 509 --~g~~~~A~~l~~~m 522 (783)
..++.+|.++|--+
T Consensus 367 F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTTCHHHHHHHHHGG
T ss_pred hhcCCHHHHHHHHHHH
Confidence 57788888877766
No 301
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.09 E-value=1e+02 Score=31.61 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=9.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC
Q 039931 542 CKQGRMKPAIDAFMDMYRTGLVPD 565 (783)
Q Consensus 542 ~~~g~~~~A~~~~~~m~~~g~~p~ 565 (783)
++.|+.+ +.+.+++.|..|+
T Consensus 352 ~~~g~~~----iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 352 AQQGHTD----IVTLLLKNGASPN 371 (437)
T ss_dssp HHTTCHH----HHHHHHHTTCCSC
T ss_pred HHCChHH----HHHHHHHCcCCCC
Confidence 4455543 3334445555554
No 302
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.58 E-value=1.3e+02 Score=27.32 Aligned_cols=85 Identities=9% Similarity=-0.084 Sum_probs=40.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhH--HHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHHH--HHHHHHHHHh
Q 039931 258 LNGYVKARDIDQANMLYEEMRSRDIAPDAVT--FNIIVSGHCKYGGMEDGDRLLRDLSVSGLLPNCTL--YDITVAGLCW 333 (783)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~ 333 (783)
+...++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+-... +.+.|..++... ..+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL----LVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHH----HHHcCCCccccCCCCCCHHHHHHH
Confidence 4445667777777777776666655444321 1223344455566543333 333443332111 1122333445
Q ss_pred cCCHHHHHHHHHH
Q 039931 334 AGRLDEAMEFFED 346 (783)
Q Consensus 334 ~g~~~~A~~~~~~ 346 (783)
.|+.+-...+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 5665554444443
No 303
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=32.34 E-value=3.5e+02 Score=26.10 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=9.0
Q ss_pred HHHHHHhcCChhHHHHHH
Q 039931 145 LFKSLLRVGDYGSVWKLF 162 (783)
Q Consensus 145 ll~~l~~~g~~~~A~~~~ 162 (783)
.+..-++.|+.+-+..++
T Consensus 28 ~L~~Av~~g~~~~V~~LL 45 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLL 45 (337)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344445666665444443
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.95 E-value=2.9e+02 Score=24.69 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=22.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 039931 543 KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 580 (783)
+-.+.+.|+-.+-+|++.| .|..+.-..++.+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456777777777777777 665555555555554444
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.31 E-value=1.6e+02 Score=28.65 Aligned_cols=225 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039931 325 DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK 404 (783)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 404 (783)
..++.-|...|+.++|...++++......|..+....-...=.+...-+.+-.++..+.. ++-+.......+...+...
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Q ss_pred CC--------hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC--HHHHHHHH----------------------HHH
Q 039931 405 GR--------LPEAWDLLCKMIEKGFPINKVAFTVLLDGYFRIGD--LIGAQSLW----------------------NEL 452 (783)
Q Consensus 405 g~--------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~----------------------~~~ 452 (783)
.+ ++..-.++.+++..++-|-..........-...|. ...|..++ +++
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eel 165 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHL 165 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHH
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCC
Q 039931 453 NRRKIFPDAVAFSAYINGLSKAGLVDEAYGVFLEMSRIGFVPNNFAYNSLIAGFCNRGKL--NEALKLEREMRQKGLLPD 530 (783)
Q Consensus 453 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~~~~p~ 530 (783)
.++ .+.++.-|...|+.++|.+.++++....+.+ ..+...+..++-+.++. +...+++..+.+.|+-+.
T Consensus 166 kkk--------i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 166 VKE--------IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHH--------HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHH--------HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Q ss_pred HHHHHHHHHHHHhcCChH----HHHHHHHHHHH
Q 039931 531 NFTFNIIINGFCKQGRMK----PAIDAFMDMYR 559 (783)
Q Consensus 531 ~~~~~~li~~~~~~g~~~----~A~~~~~~m~~ 559 (783)
......+...+....++. .|..++.++..
T Consensus 237 ~q~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~ 269 (307)
T 2zu6_B 237 DQMKRGYERIYNEIPDINLDVPHSYSVLERFVE 269 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhhcccccHHHHHHHHHH
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.99 E-value=1.1e+02 Score=26.16 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCC
Q 039931 325 DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGL--EENAFEAYKIMHQFGLT 388 (783)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 388 (783)
+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...++-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 44566677777777777777776421111 12223333333333222 33455666666555433
No 307
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.85 E-value=86 Score=28.63 Aligned_cols=19 Identities=16% Similarity=-0.057 Sum_probs=10.1
Q ss_pred HHccCChHHHHHHHHHHHh
Q 039931 471 LSKAGLVDEAYGVFLEMSR 489 (783)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~~ 489 (783)
.+..|+...++++.+.+.+
T Consensus 217 A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555543
No 308
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.74 E-value=1.1e+02 Score=27.70 Aligned_cols=14 Identities=7% Similarity=-0.009 Sum_probs=6.1
Q ss_pred HhcCChhHHHHHHH
Q 039931 150 LRVGDYGSVWKLFR 163 (783)
Q Consensus 150 ~~~g~~~~A~~~~~ 163 (783)
++.|+.+....+++
T Consensus 14 ~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 14 AYSGKLDELKERIL 27 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 34444444444443
No 309
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=28.75 E-value=3.7e+02 Score=25.20 Aligned_cols=38 Identities=13% Similarity=-0.002 Sum_probs=17.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 574 GGYCKALDIVRADELVNKMYAGGLDPDITTYNIRMHGY 611 (783)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 611 (783)
...-+.+++++..+..+++.+.+...+..--|.|-.+|
T Consensus 39 KLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAY 76 (261)
T 3ubw_A 39 KLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 76 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 33344555555555555555444344443333333333
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.53 E-value=2.6e+02 Score=25.86 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=19.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 039931 257 LLNGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~m~~ 279 (783)
-++.+....++++|.++.++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46778889999999999988764
No 311
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.68 E-value=2.7e+02 Score=25.75 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=44.3
Q ss_pred HHHHHccCChHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 039931 468 INGLSKAGLVDEAYGVFLEMSRI--GFVP----NNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGF 541 (783)
Q Consensus 468 i~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 541 (783)
++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 45566667777777666655432 1111 001111222222222222333444444422 34566666667777
Q ss_pred HhcCChHHHHHHHHHHH
Q 039931 542 CKQGRMKPAIDAFMDMY 558 (783)
Q Consensus 542 ~~~g~~~~A~~~~~~m~ 558 (783)
.+.|+.++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 88888888887775544
No 312
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=27.02 E-value=2.5e+02 Score=22.66 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH-HhcCChhhHHHHHH
Q 039931 656 IIAAKLLKMAFVPNVVTTNVLLSHF-CKQGMPEKTLLWGQ 694 (783)
Q Consensus 656 ~~~~~~~~~~~~p~~~~~~~ll~~~-~~~g~~~~A~~~~~ 694 (783)
+....+.++|+..+...- ++ ...|+.++|++|+-
T Consensus 78 ~~v~~L~eMGF~~~~a~~-----AL~~~~nd~erAlewL~ 112 (118)
T 4ae4_A 78 QLMSKFKEMGFELKDIKE-----VLLLHNNDQDNALEDLM 112 (118)
T ss_dssp HHHHHHHHTTCCHHHHHH-----HHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHH-----HHHHcCCCHHHHHHHHH
Confidence 345567778887765443 33 34678888888764
No 313
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.79 E-value=74 Score=22.50 Aligned_cols=48 Identities=19% Similarity=0.056 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 039931 106 VLDALLHGYLRVEMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGD 154 (783)
Q Consensus 106 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~ 154 (783)
.++.++..+++..-.++++-.++++++.| ..+..+|---.+.+++...
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF 51 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQF 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 35556666666666778888888887777 5666777666666655433
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.74 E-value=3.1e+02 Score=24.46 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=23.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcC
Q 039931 543 KQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKAL 580 (783)
Q Consensus 543 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 580 (783)
+-.+.+.|+-.+-+|++.|-.|..+.-..++.+....|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 44567777777777777776665555555555544333
No 315
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.81 E-value=91 Score=28.45 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=7.7
Q ss_pred HhcCCHHHHHHHHHHHH
Q 039931 437 FRIGDLIGAQSLWNELN 453 (783)
Q Consensus 437 ~~~g~~~~A~~~~~~~~ 453 (783)
...|+...+.++.+.+.
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444444444444443
No 316
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.09 E-value=54 Score=21.30 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=17.5
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 039931 659 AKLLKMAFVPNVVTTNVLLSHFCKQGMPEKTLLWG 693 (783)
Q Consensus 659 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 693 (783)
.++.++|+..+.... ++...|+++.|.+|+
T Consensus 14 ~~L~~MGF~~~~a~~-----AL~~~~n~e~A~~~L 43 (47)
T 2ekk_A 14 QQLMDMGFTREHAME-----ALLNTSTMEQATEYL 43 (47)
T ss_dssp HHHHHHHCCHHHHHH-----HHHHSCSHHHHHHHH
T ss_pred HHHHHcCCCHHHHHH-----HHHHcCCHHHHHHHH
Confidence 445556665543332 445556788887765
No 317
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.99 E-value=5.8e+02 Score=26.20 Aligned_cols=150 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhc-
Q 039931 478 DEAYGVFLEMSR--------IGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGL----LPDNFTFNIIINGFCKQ- 544 (783)
Q Consensus 478 ~~A~~~~~~m~~--------~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~----~p~~~~~~~li~~~~~~- 544 (783)
++...++..... .++..+......++.. ..|+..++..+++.+..... .....+...+-....+.
T Consensus 168 edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 168 EDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp HHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhh
Q ss_pred -----------------------CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCC
Q 039931 545 -----------------------GRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALD-----IVRADELVNKMYAGG 596 (783)
Q Consensus 545 -----------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g 596 (783)
++.+.|+..+.+|++.|..|....-..++.+....|. ..-|...++....-|
T Consensus 246 ~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 246 ARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp CC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039931 597 LDPDITTYNIRMHGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 597 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.+--.......+-.++..-+...+...++...+
T Consensus 326 ~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 326 PAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
No 318
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.62 E-value=4.1e+02 Score=23.96 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHH---HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039931 537 IINGF---CKQGRMKPAIDAFMDMYRTGLVPDIVTYNTLIGGYCKALD-----IVRADELVNKMYAGGLDPDITTYNIRM 608 (783)
Q Consensus 537 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~p~~~~~~~li 608 (783)
+|+++ .+-.+.+.|+-.+-+|++.|-.|..+.-..++.+.-..|. ...|...++....-|.+--.......+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 039931 609 HGYCNIRKMNQAAMMLDELVS 629 (783)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~m~~ 629 (783)
.-++..-+...+ ..++..++
T Consensus 118 iyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp HHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHcCCccHHH-HHHHHHHH
No 319
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.46 E-value=1.2e+02 Score=30.16 Aligned_cols=19 Identities=26% Similarity=0.107 Sum_probs=9.0
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 039931 260 GYVKARDIDQANMLYEEMR 278 (783)
Q Consensus 260 ~~~~~g~~~~A~~~~~~m~ 278 (783)
..+..|+.+-+..+++...
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~ 108 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAK 108 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhcc
Confidence 3344555555544444433
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.23 E-value=1.7e+02 Score=26.84 Aligned_cols=49 Identities=12% Similarity=0.299 Sum_probs=33.5
Q ss_pred HHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 039931 236 RMIFDMIQEEGLSPN-VVVYNALLNGYVKARDIDQANMLYEEMRSRDIAP 284 (783)
Q Consensus 236 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 284 (783)
..+|..|...|+--. ...|......+-..|++.+|.++|+.-++++..|
T Consensus 134 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 134 VELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 567777777766433 3446666667777777777777777777776665
No 321
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=22.98 E-value=8.9e+02 Score=27.66 Aligned_cols=159 Identities=10% Similarity=0.006 Sum_probs=84.3
Q ss_pred HHHHHHHhcCC---hHHHHHHHHHHHHcC----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 039931 536 IIINGFCKQGR---MKPAIDAFMDMYRTG----LVPDIVTYNTLIGGYCKALDIVRADELVNKMYAGGLDPDITTYNIRM 608 (783)
Q Consensus 536 ~li~~~~~~g~---~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 608 (783)
.++...|+.|. .++|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++...+ ..+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~---~~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQ---AQLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHH---CCSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHc---cCCHHHHHHHH
Confidence 45566666665 345667777665431 445533 2223333456776666667777765 23444445667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhhc--cHHHHHHHHHH---HHHcCCCCCHHHHHHHHHHHHh
Q 039931 609 HGYCNIRKMNQAAMMLDELVSAG-IVPNTVTYNTLMNGVCCD--ILDRAIIIAAK---LLKMAFVPNVVTTNVLLSHFCK 682 (783)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~--~~~~A~~~~~~---~~~~~~~p~~~~~~~ll~~~~~ 682 (783)
.+++...+.....++++..+... +++... . .++.++..+ ..+.|.+.+.+ .+...+......+..++.....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~-~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRKQDA-T-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCGGGH-H-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCchhhH-H-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 77777777776666666655422 333222 1 222233322 23455555543 1111122333456677777776
Q ss_pred cCChhhHHHHHHHHhhcCC
Q 039931 683 QGMPEKTLLWGQKLSEISF 701 (783)
Q Consensus 683 ~g~~~~A~~~~~~~~~~~~ 701 (783)
.-..++-++-++...+-.+
T Consensus 844 ~~~t~~~~~~~~~f~~~~~ 862 (909)
T 4fke_A 844 RFSSEFELQQLEQFKKNNM 862 (909)
T ss_dssp TCCSHHHHHHHHHHHTTCS
T ss_pred hcCCHHHHHHHHHHHhhCC
Confidence 6666666666666665443
No 322
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.61 E-value=2e+02 Score=25.96 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=8.8
Q ss_pred HHcCCHHHHHHHHHHHHhCC
Q 039931 367 SRAGLEENAFEAYKIMHQFG 386 (783)
Q Consensus 367 ~~~g~~~~A~~~~~~m~~~~ 386 (783)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 34444444444444444443
No 323
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.43 E-value=76 Score=26.59 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=7.7
Q ss_pred HHhcCChhhHHHHHHH
Q 039931 184 FCRNGCIRIGESLLHV 199 (783)
Q Consensus 184 ~~~~g~~~~A~~~~~~ 199 (783)
.+..|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555555444444
No 324
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.32 E-value=1.3e+02 Score=26.52 Aligned_cols=12 Identities=8% Similarity=0.019 Sum_probs=5.0
Q ss_pred hcCCHHHHHHHH
Q 039931 333 WAGRLDEAMEFF 344 (783)
Q Consensus 333 ~~g~~~~A~~~~ 344 (783)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444444333
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.92 E-value=4.5e+02 Score=27.12 Aligned_cols=102 Identities=11% Similarity=0.062 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 039931 118 EMSAEVMEILYRMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCIRIGESLL 197 (783)
Q Consensus 118 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 197 (783)
.+.+-|.++-. +.|++-....|..-...|...|++++|.++-....+ |.-.+..|.+.+-.+=..-|...--+.+|
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 45555554433 345444455566666777888888888877655533 34556666655444334445555566666
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 039931 198 HVMHKYMCVADFFAYNILINAYCIRGQ 224 (783)
Q Consensus 198 ~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (783)
..+...| ..+..---.+++.-...|+
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r 444 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGR 444 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccH
Confidence 6666655 3454444444444444444
No 326
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.86 E-value=4.5e+02 Score=23.80 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=12.3
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 039931 259 NGYVKARDIDQANMLYEEMRS 279 (783)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~m~~ 279 (783)
..|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 345556666666666666554
No 327
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.72 E-value=3.5e+02 Score=22.51 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=39.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 039931 129 RMREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCI 190 (783)
Q Consensus 129 ~~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 190 (783)
.+.+.|..++. .-..++..+...+..-.|.++++.+.+.++..+..|..--++.+...|-+
T Consensus 12 ~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 35566765553 34456666666677777888888887777766766655556666665543
No 328
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.59 E-value=2e+02 Score=25.87 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=12.8
Q ss_pred HHHHHhcCChhhHHHHHHH
Q 039931 181 ILGFCRNGCIRIGESLLHV 199 (783)
Q Consensus 181 ~~~~~~~g~~~~A~~~~~~ 199 (783)
+...+..|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4556677887777777664
No 329
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.32 E-value=4.2e+02 Score=26.34 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 039931 326 ITVAGLCWAGRLDEAMEFFEDMF 348 (783)
Q Consensus 326 ~li~~~~~~g~~~~A~~~~~~m~ 348 (783)
.++.-|...|++++|.+.++++.
T Consensus 17 ~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 17 TVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 45555666666666666666654
No 330
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.14 E-value=1.4e+02 Score=27.26 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 039931 583 VRADELVNKMYAGGLDPD-ITTYNIRMHGYCNIRKMNQAAMMLDELVSAGIVP 634 (783)
Q Consensus 583 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 634 (783)
+++.++|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 567788888888777654 4667778888888899999999988888777777
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.63 E-value=3.3e+02 Score=22.32 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=38.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 039931 130 MREVGIMPSESAITILFKSLLRVG-DYGSVWKLFRDMIHLGPRPSNYTFNALILGFCRNGCI 190 (783)
Q Consensus 130 ~~~~g~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 190 (783)
+.+.|..++. .-..++..+...+ ..-.|.++++.+.+.++..+..|..--++.+...|-+
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4556665553 3445666666665 6777888888888777777776655556666655543
No 332
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.22 E-value=3.2e+02 Score=26.86 Aligned_cols=231 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039931 325 DITVAGLCWAGRLDEAMEFFEDMFEKGISPSIFAFNSIIAAYSRAGLEENAFEAYKIMHQFGLTPSSCTCSSLLVGLCKK 404 (783)
Q Consensus 325 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 404 (783)
..++.-|...|+.++|...++++......|..+........-.+....+.+..++..+.+.|+-+.......+-+.+...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Q ss_pred C----ChhHHHHHHHHHHHc----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 039931 405 G----RLPEAWDLLCKMIEK----GFPINKVAFTVLLDGYFRIGDLIGAQSLWNELNRRKIFPDAVAFSAYINGLSKAGL 476 (783)
Q Consensus 405 g----~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 476 (783)
. |...|...+..+... |..|-...++.+...+...|. .......++..+++...
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~------------------~~~fl~~vl~~l~~~~g 156 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK------------------AASLLLEILGLLCKSMG 156 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC------------------HHHHHHHHHHHHHHHHC
T ss_pred hHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch------------------HHHHHHHHHHHHHHHcC
Q ss_pred hHHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 039931 477 VDEAYGVFLEM---SRIGFVPNNFAYNSLIAGFCNRGKLNEALKLEREMRQKGLLPDNFTFNIIINGFCKQGRMKPAIDA 553 (783)
Q Consensus 477 ~~~A~~~~~~m---~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 553 (783)
.+.+.++|.+- ...-++++.. +..+.+...++.-......-......+-...-..|-..+...-..++....
T Consensus 157 ~~~l~~~~~~s~l~l~~f~P~~~~-----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~ 231 (339)
T 1ug3_A 157 PKKVGTLWREAGLSWKEFLPEGQD-----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDW 231 (339)
T ss_dssp HHHHHHHHHHTTCCGGGTSCTTCC-----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHhCCCchh-----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHH
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHH
Q 039931 554 FMDMYRTGLVPDIVTYNTLIGGYCK 578 (783)
Q Consensus 554 ~~~m~~~g~~p~~~~~~~li~~~~~ 578 (783)
++........++.....++..+.++
T Consensus 232 i~~~~~~~~~~~~~~~~~l~~a~~~ 256 (339)
T 1ug3_A 232 IEANLSEQQIVSNTLVRALMTAVCY 256 (339)
T ss_dssp HHHHSCHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCChhhCChHHHHHHHHHHHHH
No 333
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.18 E-value=2.1e+02 Score=24.53 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=43.6
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCh
Q 039931 121 AEVMEILYR-MREVGIMPSESAITILFKSLLRVGDYGSVWKLFRDMIHL--GPRPSNYTFNALILGFCRNGCI 190 (783)
Q Consensus 121 ~~A~~~~~~-~~~~g~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 190 (783)
+.+++-+.+ +.+.|...+. .-..++..+...+..-.|.++++.+.+. ++..+..|-.--++.+...|-.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344444433 4455666543 4556677777777778888888888777 6666666655555666666644
No 334
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.05 E-value=3e+02 Score=23.95 Aligned_cols=29 Identities=14% Similarity=-0.043 Sum_probs=14.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCc
Q 039931 292 IVSGHCKYGGMEDGDRLLRDLSVSGLLPN 320 (783)
Q Consensus 292 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 320 (783)
.+...+..|+.+.-.++.+.+++.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 34444455555544555555555555443
No 335
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.01 E-value=3.6e+02 Score=21.99 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=11.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHH
Q 039931 465 SAYINGLSKAGLVDEAYGVFLEM 487 (783)
Q Consensus 465 ~~li~~~~~~g~~~~A~~~~~~m 487 (783)
+.++.-|...|+.++|...++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 33444444445555555544444
Done!