BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039934
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Oxidizing Conditions. A Fully Occupied
Dinuclear Iron Cluster.
pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Reducing Conditions. A Fully Occupied
Dinuclear Iron Cluster And Bound Acetate.
pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
Length = 390
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 225/329 (68%), Positives = 267/329 (81%), Gaps = 5/329 (1%)
Query: 2 PSIPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEK 61
PS+ +EPLL NP RF +FPI+Y +IW+MYKKAEASFWTAEEVDLS+DI+ WE+L DE+
Sbjct: 66 PSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDER 125
Query: 62 HFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI 121
HFI+HVLAFFAASDGIV ENL RF +EVQV+EAR FYGFQIA+ENIHSEMYSLL++TYI
Sbjct: 126 HFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYI 185
Query: 122 KNSDEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIF 180
K+ E+ LF A ET+PCV KKADWAL WI D T+ ER++AFA VEGIFFSGSF +IF
Sbjct: 186 KDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 245
Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFV 240
WLKKRGLMPGLTFSNELISRDEGLHCDFACL++ L +K +E+RV+ I+ AV IE+EF+
Sbjct: 246 WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFL 305
Query: 241 CDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEK 300
+ALP L+GMN LM QYIEFVADRL+ LG K++ V NPFD+ME ISL+GKTNFFEK
Sbjct: 306 TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFMENISLEGKTNFFEK 365
Query: 301 RVGEYQKASVMSSLNGNGGNHVFKMDEDF 329
RVGEYQ+ VMS N + F +D DF
Sbjct: 366 RVGEYQRMGVMS----NSTENSFTLDADF 390
>pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit R2
Length = 332
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/329 (68%), Positives = 265/329 (80%), Gaps = 5/329 (1%)
Query: 2 PSIPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEK 61
P + +EPLL NP RF +FPI+Y +IW+MYKKAEASFWTAEEVDLS+DI+ WESL +E+
Sbjct: 8 PGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEER 67
Query: 62 HFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI 121
+FI+HVLAFFAASDGIV ENL RF +EVQ++EAR FYGFQIA+ENIHSEMYSLL++TYI
Sbjct: 68 YFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYI 127
Query: 122 KNSDEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIF 180
K+ E+ LF A ET+PCV KKADWAL WI D T+ ER++AFA VEGIFFSGSF +IF
Sbjct: 128 KDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 187
Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFV 240
WLKKRG MPGLTFSNELISRDEGLHCDFACL++ L +K SEERV+ I+ AV IE+EF+
Sbjct: 188 WLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFL 247
Query: 241 CDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEK 300
+ALP L+GMN LM QYIEFVADRL+ LG KV+ V NPFD+ME ISL+GKTNFFEK
Sbjct: 248 TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTNFFEK 307
Query: 301 RVGEYQKASVMSSLNGNGGNHVFKMDEDF 329
RVGEYQ+ VMSS N F +D DF
Sbjct: 308 RVGEYQRMGVMSSPTENS----FTLDADF 332
>pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2
pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2
Length = 351
Score = 452 bits (1164), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/325 (67%), Positives = 260/325 (80%), Gaps = 5/325 (1%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFIT 65
EEPLL + RF +FPIQYP+IW+MYK+A+ASFWTAEEVDLS+D+ W L ADEK+FI+
Sbjct: 31 EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFIS 90
Query: 66 HVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSD 125
H+LAFFAASDGIV ENL RF +EVQV EAR FYGFQI IEN+HSEMYSLL++TYI++
Sbjct: 91 HILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPK 150
Query: 126 EKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKK 184
++ LF A ET+P V KKADWAL WI D TF ER++AFA VEG+FFSGSF AIFWLKK
Sbjct: 151 KREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKK 210
Query: 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDAL 244
RGLMPGLTFSNELISRDEGLHCDFACL++ L NK SEERV+ I+ +AV+IE+EF+ +AL
Sbjct: 211 RGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEAL 270
Query: 245 PCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEKRVGE 304
P L+GMN LM QYIEFVADRLL LG KV+ NPFD+ME ISL+GKTNFFEKRV E
Sbjct: 271 PVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSE 330
Query: 305 YQKASVMSSLNGNGGNHVFKMDEDF 329
YQ+ +VM+ N VF +D DF
Sbjct: 331 YQRFAVMAETTDN----VFTLDADF 351
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
Length = 349
Score = 446 bits (1148), Expect = e-126, Method: Compositional matrix adjust.
Identities = 206/323 (63%), Positives = 251/323 (77%), Gaps = 4/323 (1%)
Query: 7 EPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITH 66
E +L +RF + PI YPE+W YKKAEASFWTAEE+DLS D++ +E L +EKHFI H
Sbjct: 31 EKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIKH 90
Query: 67 VLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDE 126
VLAFFAASDGIVLENLA++F++EV++ EA+ FY FQIA+ENIHSE YSLL++ YIK+ E
Sbjct: 91 VLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKE 150
Query: 127 KSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRG 186
+ LF A E +P + KA WA WI+ + +FAER++A ACVEGI FSGSFCAIFW KK+
Sbjct: 151 RLNLFHAIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQN 210
Query: 187 LMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDALPC 246
+ GLTFSNELISRDEGLH DF CL+YSLL NKL E V+ IVKEAVE+ER F+C++LPC
Sbjct: 211 KLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPC 270
Query: 247 ALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEKRVGEYQ 306
L+GMN LMSQYIEFVADRLL LGC KV+ NPF+WM+LISLQGKTNFFEKRV +YQ
Sbjct: 271 DLIGMNSRLMSQYIEFVADRLLECLGCSKVFHSKNPFNWMDLISLQGKTNFFEKRVADYQ 330
Query: 307 KASVMSSLNGNGGNHVFKMDEDF 329
K+ VM+ VF ++ DF
Sbjct: 331 KSGVMAQ----RKEQVFSLNTDF 349
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
Length = 326
Score = 423 bits (1087), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/292 (69%), Positives = 239/292 (81%), Gaps = 1/292 (0%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFIT 65
EEPLL + RF +FPIQYP+IW+MYK+A+ASFWTAEEVDLS+D+ W L ADEK+FI+
Sbjct: 35 EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFIS 94
Query: 66 HVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSD 125
H+LAFFAASDGIV ENL RF +EVQV EAR FYGFQI IEN+HSEMYSLL++TYI++
Sbjct: 95 HILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPK 154
Query: 126 EKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKK 184
++ LF A ET+P V KKADWAL WI D TF ER++AFA VEG+FFSGSF AIFWLKK
Sbjct: 155 KREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKK 214
Query: 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDAL 244
RGLMPGLTFSNELISRDEGLHCDFACL++ L NK SEERV+ I+ +AV+IE+EF+ +AL
Sbjct: 215 RGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEAL 274
Query: 245 PCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTN 296
P L+GMN LM QYIEFVADRLL LG KV+ NPFD+ME ISL+GKTN
Sbjct: 275 PVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTN 326
>pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
Length = 399
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/327 (62%), Positives = 246/327 (75%), Gaps = 5/327 (1%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWES-LTADEKHFI 64
EEPLL + +R +FPI+Y EIW+ YK+AEASFWTAEE+DLS+DI W + + +E+ FI
Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFI 134
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
+ VLAFFAASDGIV ENL F EVQ+ EA++FYGFQI IENIHSE YSLL++TYIK+
Sbjct: 135 SRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDP 194
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLK 183
E LF A T+P + +KA+WAL WI D F ERL+AFA +EG+FFSGSF +IFWLK
Sbjct: 195 KESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLK 254
Query: 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDA 243
KRG+MPGLTFSNELI RDEGLH DFACLL++ L+NK V+ IV EAVEIE+ + DA
Sbjct: 255 KRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDA 314
Query: 244 LPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEKRVG 303
LP AL+GMN LM+QY+EFVADRLL A G K Y V NPFD+ME ISL GKTNFFEKRV
Sbjct: 315 LPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMENISLAGKTNFFEKRVS 374
Query: 304 EYQKASVMS-SLNGNGGNHVFKMDEDF 329
+YQKA VMS S G F +EDF
Sbjct: 375 DYQKAGVMSKSTKQEAG--AFTFNEDF 399
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 414 bits (1065), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/327 (62%), Positives = 246/327 (75%), Gaps = 5/327 (1%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWES-LTADEKHFI 64
EEPLL + +R +FPI+Y EIW+ YK+AEASFWTAEE+DLS+DI W + + +E+ FI
Sbjct: 95 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFI 154
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
+ VLAFFAASDGIV ENL F EVQ+ EA++FYGFQI IENIHSE YSLL++TYIK+
Sbjct: 155 SRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDP 214
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLK 183
E LF A T+P + +KA+WAL WI D F ERL+AFA +EG+FFSGSF +IFWLK
Sbjct: 215 KESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLK 274
Query: 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDA 243
KRG+MPGLTFSNELI RDEGLH DFACLL++ L+NK V+ IV EAVEIE+ + DA
Sbjct: 275 KRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDA 334
Query: 244 LPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEKRVG 303
LP AL+GMN LM+QY+EFVADRLL A G K Y V NPFD+ME ISL GKTNFFEKRV
Sbjct: 335 LPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMENISLAGKTNFFEKRVS 394
Query: 304 EYQKASVMS-SLNGNGGNHVFKMDEDF 329
+YQKA VMS S G F +EDF
Sbjct: 395 DYQKAGVMSKSTKQEAG--AFTFNEDF 419
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|C Chain C, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|D Chain D, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
Length = 286
Score = 413 bits (1062), Expect = e-116, Method: Compositional matrix adjust.
Identities = 198/284 (69%), Positives = 235/284 (82%), Gaps = 1/284 (0%)
Query: 4 IPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHF 63
+ +EPLL NP RF +FPI+Y +IW+MYKKAEASFWTAEEVDLS+DI+ WESL +E++F
Sbjct: 3 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYF 62
Query: 64 ITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKN 123
I+HVLAFFAASDGIV ENL RF +EVQ++EAR FYGFQIA+ENIHSEMYSLL++TYIK+
Sbjct: 63 ISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKD 122
Query: 124 SDEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWL 182
E+ LF A ET+PCV KKADWAL WI D T+ ER++AFA VEGIFFSGSF +IFWL
Sbjct: 123 PKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWL 182
Query: 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCD 242
KKRGLMPGLTFSNELISRDEGLHCDFACL++ L +K SEERV+ I+ AV IE+EF+ +
Sbjct: 183 KKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTE 242
Query: 243 ALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWM 286
ALP L+GMN LM QYIEFVADRL+ LG KV+ V NPFD+M
Sbjct: 243 ALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFM 286
>pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
pdb|4DJN|B Chain B, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
Length = 311
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/292 (67%), Positives = 231/292 (79%), Gaps = 1/292 (0%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFIT 65
EEPLL + RF +FPIQYP+IW+ YK+A+ASFWTAEEVDLS+D+ W L ADEK+FI+
Sbjct: 20 EEPLLRKSSRRFVIFPIQYPDIWKXYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFIS 79
Query: 66 HVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSD 125
H+LAFFAASDGIV ENL RF +EVQV EAR FYGFQI IEN+HSE YSLL++TYI++
Sbjct: 80 HILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEXYSLLIDTYIRDPK 139
Query: 126 EKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKK 184
++ LF A ET P V KKADWAL WI D TF ER++AFA VEG+FFSGSF AIFWLKK
Sbjct: 140 KREFLFNAIETXPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKK 199
Query: 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDAL 244
RGL PGLTFSNELISRDEGLHCDFACL + L NK SEERV+ I+ +AV+IE+EF+ +AL
Sbjct: 200 RGLXPGLTFSNELISRDEGLHCDFACLXFQYLVNKPSEERVREIIVDAVKIEQEFLTEAL 259
Query: 245 PCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTN 296
P L+G N L QYIEFVADRLL LG KV+ NPFD+ E ISL+GKTN
Sbjct: 260 PVGLIGXNCILXKQYIEFVADRLLVELGFSKVFQAENPFDFXENISLEGKTN 311
>pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
Length = 311
Score = 403 bits (1036), Expect = e-113, Method: Compositional matrix adjust.
Identities = 182/282 (64%), Positives = 227/282 (80%)
Query: 7 EPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITH 66
E +L+ DRF ++PI YP++W+ YKKAEASFWTAEE+DLS D++ +E L +EKHFI H
Sbjct: 30 EKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIKH 89
Query: 67 VLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDE 126
VLAFFAASDGIVLENLA++F+++V+++EA+ FY FQIA+ENIHSE YSLL++ YIK+ E
Sbjct: 90 VLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKE 149
Query: 127 KSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRG 186
+ LF A E +P V KA WA WI+ + +FAER++A ACVEGI FSGSFCAIFW KK+
Sbjct: 150 RMNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQN 209
Query: 187 LMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDALPC 246
+ GLTFSNELISRDEGLH DF CL+YSLL NKL EE V+ IVKEAVE+ER F+C++LPC
Sbjct: 210 KLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPC 269
Query: 247 ALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMEL 288
L+GMN LMSQYIEFVADRLL LG K++ NPF+WM+L
Sbjct: 270 DLIGMNSRLMSQYIEFVADRLLECLGSPKIFHAKNPFNWMDL 311
>pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer
pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
Length = 345
Score = 285 bits (729), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 140/308 (45%), Positives = 205/308 (66%), Gaps = 2/308 (0%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFIT 65
+E LL N RF MFPI+Y EIW YKK EASFWTAEE++L++D ++ LT D+K +I
Sbjct: 24 DEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIG 83
Query: 66 HVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSD 125
++LA +SD +V + L F ++Q E ++FYGFQI +ENI+SE+YS++++ + K+
Sbjct: 84 NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDP- 142
Query: 126 EKSRLFRAFETVPCVAKKADWALNWIDGSET-FAERLIAFACVEGIFFSGSFCAIFWLKK 184
+ LF+ +P V KA + WI ++ +AERL+AFA EGIF +G++ ++FWL
Sbjct: 143 KNIPLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTD 202
Query: 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDAL 244
+ +MPGL +N I RD G + DF+CLL++ LR K + + ++ I+ EAVEIE+E+ ++L
Sbjct: 203 KKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSL 262
Query: 245 PCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEKRVGE 304
P GM+ + YIEFVAD LL G K Y NPF++ME ++ GKT FFEK+V +
Sbjct: 263 PVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAVNPFEFMEDVATAGKTTFFEKKVSD 322
Query: 305 YQKASVMS 312
YQKAS MS
Sbjct: 323 YQKASDMS 330
>pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide
Reductase R2 From Chlamydia Trachomatis
Length = 346
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 156/318 (49%), Gaps = 27/318 (8%)
Query: 19 MFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWES--LTADEKHFITHVLAFFAASDG 76
+ PI+Y WE Y A+ W E+ + +DI W+S L+ DE+ I L FF+ ++
Sbjct: 31 LVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAES 90
Query: 77 IVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFET 136
+V N+ K V EAR + Q E +H+ Y + E+ DEK +F A+
Sbjct: 91 LVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTYLYICESL--GLDEKE-IFNAYNE 147
Query: 137 VPCVAKKADWAL-------------NWIDGSETFAERLIAFACV-EGIFFSGSFCAIFWL 182
+ K D+ + + ++G + F + L+ + + EGIFF F I
Sbjct: 148 RAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSF 207
Query: 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSE-------ERVKGIVKEAVEI 235
++ M G+ + I RDE +H +F L + ++ + E + + ++K AV++
Sbjct: 208 HRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDL 267
Query: 236 EREFVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWM-ELISLQGK 294
E E+ D LP ++G+ ++ Y++ +ADR L +G +Y NPF WM E I L +
Sbjct: 268 EIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETIDLNKE 327
Query: 295 TNFFEKRVGEYQKASVMS 312
NFFE RV EYQ A+ ++
Sbjct: 328 KNFFETRVIEYQHAASLT 345
>pdb|4D8F|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8G|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
Length = 366
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 156/318 (49%), Gaps = 27/318 (8%)
Query: 19 MFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWES--LTADEKHFITHVLAFFAASDG 76
+ PI+Y WE Y A+ W E+ + +DI W+S L+ DE+ I L FF+ ++
Sbjct: 51 LVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAES 110
Query: 77 IVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFET 136
+V N+ K V EAR + Q E +H+ + + E+ DEK +F A+
Sbjct: 111 LVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESL--GLDEKE-IFNAYNE 167
Query: 137 VPCVAKKADWAL-------------NWIDGSETFAERLIAFACV-EGIFFSGSFCAIFWL 182
+ K D+ + + ++G + F + L+ + + EGIFF F I
Sbjct: 168 RAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSF 227
Query: 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSE-------ERVKGIVKEAVEI 235
++ M G+ + I RDE +H +F L + ++ + E + + ++K AV++
Sbjct: 228 HRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDL 287
Query: 236 EREFVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWM-ELISLQGK 294
E E+ D LP ++G+ ++ Y++ +ADR L +G +Y NPF WM E I L +
Sbjct: 288 EIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETIDLNKE 347
Query: 295 TNFFEKRVGEYQKASVMS 312
NFFE RV EYQ A+ ++
Sbjct: 348 KNFFETRVIEYQHAASLT 365
>pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide
Reductase From Chlamydia Trachomatis
Length = 346
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 156/318 (49%), Gaps = 27/318 (8%)
Query: 19 MFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWES--LTADEKHFITHVLAFFAASDG 76
+ PI+Y WE Y A+ W E+ + +DI W+S L+ DE+ I L FF+ ++
Sbjct: 31 LVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAES 90
Query: 77 IVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFET 136
+V N+ K V EAR + Q E +H+ + + E+ DEK +F A+
Sbjct: 91 LVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESL--GLDEKE-IFNAYNE 147
Query: 137 VPCVAKKADWAL-------------NWIDGSETFAERLIAFACV-EGIFFSGSFCAIFWL 182
+ K D+ + + ++G + F + L+ + + EGIFF F I
Sbjct: 148 RAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSF 207
Query: 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSE-------ERVKGIVKEAVEI 235
++ M G+ + I RDE +H +F L + ++ + E + + ++K AV++
Sbjct: 208 HRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDL 267
Query: 236 EREFVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWM-ELISLQGK 294
E E+ D LP ++G+ ++ Y++ +ADR L +G +Y NPF WM E I L +
Sbjct: 268 EIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETIDLNKE 327
Query: 295 TNFFEKRVGEYQKASVMS 312
NFFE RV EYQ A+ ++
Sbjct: 328 KNFFETRVIEYQHAASLT 345
>pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
pdb|2RCC|B Chain B, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
pdb|2RCC|C Chain C, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
Length = 346
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 138/304 (45%), Gaps = 29/304 (9%)
Query: 28 WEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLE--NLAAR 85
+ +YK A+FWT E++ S D +Q+ +LT E+ ++ A D + + AA
Sbjct: 42 YPLYKNXLANFWTPFEINXSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSXRAAE 101
Query: 86 FMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKAD 145
++ + ++ + FQ E +H++ YS +L + + + + +F ++ + ++ +
Sbjct: 102 YLTDSSLAALXSVLSFQ---EVVHNQSYSYVLSSLVPKATQ-DEIFEYWKHDDVLKERNE 157
Query: 146 WALNWIDGSE---------TFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNE 196
+ IDG E TF E ++ +EG+ F F + L + +
Sbjct: 158 FI---IDGYEKFVDNPTPKTFLESIVYDVILEGLNFYSGFAFFYNLARNQKXVSTSTXIN 214
Query: 197 LISRDEGLHCD-FACLLYSLLRN--KLSEERVKGIVK----EAVEIEREFVCDALPCALV 249
I+RDE LH F + LL +L+ E K VK +A ++E+++ + +
Sbjct: 215 YINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLXKAADLEKDWFRYIIGDKIP 274
Query: 250 GMNGALMSQYIEFVADRLLGALGCGKVYG--VTNPFDWMELIS--LQGKTNFFEKRVGEY 305
G+N YI F+A++ LG K Y NP W+ GK++FFE++ +Y
Sbjct: 275 GINPEDXETYISFIANKRAVQLGXEKPYPEIKHNPXKWIRAYEDVNSGKSDFFEQKSRQY 334
Query: 306 QKAS 309
K S
Sbjct: 335 AKVS 338
>pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
Length = 375
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 137/326 (42%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + D I + + + + E + E IHS Y+ ++ +
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFNTRSNPIPWI 335
>pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
Length = 375
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 136/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + D I + + + + E + E IHS Y+ ++ +
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFNTRSNPIPWI 335
>pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|3UUS|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|E Chain E, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|F Chain F, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|G Chain G, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|H Chain H, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 375
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 136/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + D I + + + + E + E IHS Y+ ++ +
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space
Group P6(1)22
Length = 340
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 136/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 15 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 74
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + D I + + + + E + E IHS Y+ ++ +
Sbjct: 75 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIV--- 131
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 132 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 191
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 192 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 251
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 252 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 310
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 311 YITNIRMQAVGLDLPFQTRSNPIPWI 336
>pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli
pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli
Length = 340
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 136/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + D I + + + + E + E IHS Y+ ++ +
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
Length = 375
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 136/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + + I + + + + E + E IHS Y+ ++ +
Sbjct: 74 ISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFNTRSNPIPWI 335
>pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
Length = 340
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 136/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + D I + + + + E + E IHS Y+ ++ +
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F +F F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVAFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-d84e (d84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-d84e (d84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
Length = 339
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 136/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + + I + + + + E + E IHS Y+ ++ +
Sbjct: 74 ISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFNTRSNPIPWI 335
>pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
Length = 375
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 136/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + D I + + + + E + E IHS Y+ ++ +
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRXYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFNTRSNPIPWI 335
>pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
Length = 375
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 136/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + D I + + + + E + E IHS ++ ++ +
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSHTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
Length = 340
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 136/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + D I + + + + E + E IHS ++ ++ +
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
Length = 375
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 135/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + D I + + + + E + E IHS + ++ +
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSXTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 135/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + D I + + + + E + E IHS ++ ++ +
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RD LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 135/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + D I + + + + E + E IHS ++ ++ +
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRAYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
Length = 375
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 136/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + F+ EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFFRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + + I + + + + E + E IHS Y+ ++ +
Sbjct: 74 ISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFNTRSNPIPWI 335
>pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
Length = 375
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 134/326 (41%), Gaps = 49/326 (15%)
Query: 6 EEPLLTPNPDRFCMFPIQYPEIWE-MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFI 64
+EP+ P + Q +I+E + +K + FW EEVD+S+D +++L EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS 124
L + D I + + + + E + E IHS ++ ++ +
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIV--- 130
Query: 125 DEKSRLFRAFETVPCVAKKADWALNWID--------------GSETFAER---------- 160
++ S +F T + K+A+ ++ D G+ T +
Sbjct: 131 NDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I SF F +R LM G LI+RD LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRXYVSFACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLN 250
Query: 215 LLRNKLSEERVKGIVKE-----------AVEIEREFVCDAL--PCALVGMNGALMSQYIE 261
LLR+ + + I +E A + E+++ D L +++G+N ++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVADRLLGALGCGKVYGV-TNPFDWM 286
++ + + A+G + +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase
From Corynebacterium Ammoniagenes
pdb|3MJO|B Chain B, Small Subunit (R2f) Of Native Ribonucleotide Reductase
From Corynebacterium Ammoniagenes
Length = 296
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 2/194 (1%)
Query: 29 EMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMK 88
E++ + +FW E++ +S DI+ W +T E+ V D I A +
Sbjct: 30 EVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLP 89
Query: 89 EVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWAL 148
+ + A Y +E++H++ YS + T + ++ + + FR E + +KA +
Sbjct: 90 DAETMHEEAVYTNIAFMESVHAKSYSNIFMT-LASTPQINEAFRWSEENENLQRKAKIIM 148
Query: 149 NWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 208
++ +G + ++ +A +E F F +L R + LI RDE +H +
Sbjct: 149 SYYNGDDPLKKK-VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYY 207
Query: 209 ACLLYSLLRNKLSE 222
Y KLSE
Sbjct: 208 IGYKYQQGVKKLSE 221
>pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
pdb|1UZR|B Chain B, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
pdb|1UZR|C Chain C, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
Length = 296
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 2/177 (1%)
Query: 29 EMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMK 88
E++ + +FW E+V +S DI W +LTA EK V D I A +
Sbjct: 26 EVWDRLTGNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIP 85
Query: 89 EVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWAL 148
+ A +E++H++ YS + T + E FR E + +KA+ L
Sbjct: 86 DALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTA-EIDDAFRWSEENRNLQRKAEIVL 144
Query: 149 NWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLH 205
G E ++ + +F+SG + ++W R + LI RDE +H
Sbjct: 145 QSYRGDEPLKRKVASTLLESFLFYSGFYLPMYW-SSRAKLTNTADMIRLIIRDEAVH 200
>pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1OQU|A Chain A, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|B Chain B, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|C Chain C, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|D Chain D, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|3DHZ|A Chain A, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
pdb|3DHZ|B Chain B, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
Length = 329
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 2/194 (1%)
Query: 29 EMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMK 88
E++ + +FW E++ +S DI+ W +T E+ V D I A +
Sbjct: 31 EVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLP 90
Query: 89 EVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWAL 148
+ + A Y +E++H++ YS + T + ++ + + FR E + +KA +
Sbjct: 91 DAETMHEEAVYTNIAFMESVHAKSYSNIFMT-LASTPQINEAFRWSEENENLQRKAKIIM 149
Query: 149 NWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 208
++ +G + ++ +A +E F F +L R + LI RDE +H +
Sbjct: 150 SYYNGDDPLKKK-VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYY 208
Query: 209 ACLLYSLLRNKLSE 222
Y KLSE
Sbjct: 209 IGYKYQQGVKKLSE 222
>pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 319
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 2/200 (1%)
Query: 22 IQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLEN 81
IQ + E++ + ++FW E+V LS DI W++L+A E+ V D I
Sbjct: 14 IQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIA 73
Query: 82 LAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVA 141
A M + A +E +H+ YS + T + + E + E P +
Sbjct: 74 GAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQ-TKEVDAAYAWSEENPPLQ 132
Query: 142 KKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRD 201
+KA L E ++ IA +E F F + RG + LI RD
Sbjct: 133 RKAQIILAHYVSDEPLKKK-IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRD 191
Query: 202 EGLHCDFACLLYSLLRNKLS 221
E +H + Y + KLS
Sbjct: 192 EAVHGYYIGYKYQIALQKLS 211
>pdb|4DR0|A Chain A, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
Nrdf
pdb|4DR0|B Chain B, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
Nrdf
Length = 350
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 127/294 (43%), Gaps = 17/294 (5%)
Query: 31 YKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEV 90
Y + FW EE+ L+ D+ W+ L +E+ VLA D + V
Sbjct: 43 YNQNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEHV 102
Query: 91 QVSEARAFYGFQIAIEN-IHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALN 149
+ +A F +EN +H++ YS + T + ++ + +F + + KKA +
Sbjct: 103 DGHQRKAVLNFMAMMENAVHAKSYSNIFMT-LAPTETINEVFEWVKQNKYLQKKAQMIVG 161
Query: 150 WI-----DGSETFAERLIAFACVEG-IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEG 203
D + + ++A +E +F+SG + +++ + LM N LI RDE
Sbjct: 162 LYKAIQKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIIN-LILRDEA 220
Query: 204 LHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDALPCA-----LVGMNGALMSQ 258
+H + LL + NK +EE+ + + A+++ + + L VG++ + +
Sbjct: 221 IHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYDQVGLSHDV-KK 279
Query: 259 YIEFVADRLLGALGCGKVYGV--TNPFDWMELISLQGKTNFFEKRVGEYQKASV 310
+I + A++ L LG + NP L + +FF + Y+KA+V
Sbjct: 280 FIRYNANKALMNLGFDPYFEEEDINPIVLNGLNTKTKSHDFFSMKGNGYKKATV 333
>pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli
pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked
With Ferrous Ions
pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
Length = 319
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 6/195 (3%)
Query: 29 EMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENL--AARF 86
E++ + ++FW E+V LS DI W++LT E+ V D L+N+ A
Sbjct: 21 EVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLD--TLQNVIGAPSL 78
Query: 87 MKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADW 146
M + A +E +H+ YS + T + D + + E P + +KA
Sbjct: 79 MPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAP-LQRKAQI 137
Query: 147 ALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHC 206
G + ++ IA +E F F + RG + LI RDE +H
Sbjct: 138 IQQHYRGDDPLKKK-IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHG 196
Query: 207 DFACLLYSLLRNKLS 221
+ Y K+S
Sbjct: 197 YYIGYKYQKNMEKIS 211
>pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS
pdb|4AC8|A Chain A, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|B Chain B, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|C Chain C, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|D Chain D, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
Length = 323
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 21/191 (10%)
Query: 29 EMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMK 88
+++ A FW ++D ++D WE L+ DE+ + T + F A + V E++ FM
Sbjct: 31 KLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMS 89
Query: 89 EVQVSE--ARAFYGFQIAIENI-HSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAK--- 142
++ A Y Q A E H++++ + L+ + D L R + +P +
Sbjct: 90 AMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED----LHRYLDDLPAYRQIFY 145
Query: 143 -KADWALNWIDGSETFAERLIAFAC----VEGIFFSGSFCAIFWLK---KRGLMPGLTFS 194
+ LN + + A ++ A VEG+ + A W K +R ++PG+
Sbjct: 146 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYA--WHKICVERAILPGMQEL 203
Query: 195 NELISRDEGLH 205
I DE H
Sbjct: 204 VRRIGDDERRH 214
>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1
pdb|3QFV|B Chain B, Mrck Beta In Complex With Tpca-1
Length = 415
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 28 WEMYKKAEASFWTAEEVDLSQDIRQWESLTA------DEKHFITHVLAFFAASDGIVLEN 81
WEM K+AE + + E L QW +TA DE H V+ ++ D L
Sbjct: 110 WEMLKRAETACFREERDVLVNGDCQW--ITALHYAFQDENHLYL-VMDYYVGGD---LLT 163
Query: 82 LAARFMKEVQVSEARAFYG-FQIAIENIHSEMY 113
L ++F ++ AR + G +AI++IH Y
Sbjct: 164 LLSKFEDKLPEDMARFYIGEMVLAIDSIHQLHY 196
>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil
pdb|3TKU|B Chain B, Mrck Beta In Complex With Fasudil
Length = 433
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 28 WEMYKKAEASFWTAEEVDLSQDIRQWESLTA------DEKHFITHVLAFFAASDGIVLEN 81
WEM K+AE + + E L QW +TA DE H V+ ++ D L
Sbjct: 126 WEMLKRAETACFREERDVLVNGDCQW--ITALHYAFQDENHLYL-VMDYYVGGD---LLT 179
Query: 82 LAARFMKEVQVSEARAFYG-FQIAIENIHSEMY 113
L ++F ++ AR + G +AI++IH Y
Sbjct: 180 LLSKFEDKLPEDMARFYIGEMVLAIDSIHQLHY 212
>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
pdb|2VD5|B Chain B, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
Length = 412
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 28 WEMYKKAEASFWTAEEVDLSQDIRQWES---LTADEKHFITHVLAFFAASDGIVLENLAA 84
W+M K+ E S + E L R+W + +++++ V+ ++ D L L +
Sbjct: 97 WDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGD---LLTLLS 153
Query: 85 RFMKEVQVSEARAFYGFQI--AIENIHSEMY 113
+F + + AR FY +I AI+++H Y
Sbjct: 154 KFGERIPAEMAR-FYLAEIVMAIDSVHRLGY 183
>pdb|1NMT|A Chain A, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|B Chain B, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|C Chain C, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1IYK|A Chain A, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYK|B Chain B, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYL|A Chain A, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|B Chain B, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|C Chain C, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|D Chain D, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
Length = 392
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 111 EMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAE-RLIAFACVEG 169
E+Y LL + Y+++ D R + E K W +W G + +L+AF
Sbjct: 39 ELYKLLYDNYVEDIDATFRFKYSHEFFQWALKPPGWRKDWHVGVRVKSTGKLVAFIAATP 98
Query: 170 IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIV 229
+ F L SN++I + + +F C+ L +L+ +K I
Sbjct: 99 VTFK-----------------LNKSNKVI---DSVEINFLCIHKKLRNKRLAPVLIKEIT 138
Query: 230 KEA 232
+
Sbjct: 139 RRV 141
>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|D Chain D, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 383
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 220 LSEERVKGIVKEAVEIEREFVCDALPCALVGMNGALMSQ----YIEFVAD-----RLLGA 270
L+EE+ + + ++ + I+RE V L + GMN S+ YI+ + LL
Sbjct: 28 LNEEKQQPLREKDIVIKREMVSQYLHTSKAGMNQKESSRSAMMYIQELRSGLRDMHLLSC 87
Query: 271 LGCGKVYGVTNPFDWMELISLQGKTNFFE 299
L +V NP W++ +G + +
Sbjct: 88 LESLRVSLNNNPVSWVQTFGAEGLASLLD 116
>pdb|2NN6|I Chain I, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 209
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 212 LYSLLRNKLSEERVKGIVKEAVEIEREFVCDALPCALVGMNGALMSQYIEFVADRLLGAL 271
L + R + +E V+ K+ VEI + F + A V G S Y+ A+ LG +
Sbjct: 109 LKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVV 168
Query: 272 GCGKVYGVTN-PFDWMELISLQGKTNFFEK 300
G+ P W E+ + T F K
Sbjct: 169 VAHSESGIQMVPISWCEMQCPKTHTKEFRK 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,780,862
Number of Sequences: 62578
Number of extensions: 385023
Number of successful extensions: 1025
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 65
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)