Query 039934
Match_columns 329
No_of_seqs 129 out of 1208
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00211 ribonucleoside-diphos 100.0 3E-87 6.6E-92 632.0 37.9 324 2-329 7-330 (330)
2 PLN02492 ribonucleoside-diphos 100.0 3.1E-86 6.6E-91 624.1 37.9 323 7-329 1-324 (324)
3 KOG1567 Ribonucleotide reducta 100.0 1.1E-85 2.5E-90 579.7 24.4 324 2-329 20-344 (344)
4 PRK07209 ribonucleotide-diphos 100.0 2.2E-77 4.7E-82 571.7 36.5 305 4-311 36-366 (369)
5 COG0208 NrdF Ribonucleotide re 100.0 1.7E-76 3.7E-81 553.7 36.4 305 7-313 17-340 (348)
6 PRK09101 nrdB ribonucleotide-d 100.0 1.2E-75 2.7E-80 560.5 36.0 309 4-315 13-367 (376)
7 PRK09614 nrdF ribonucleotide-d 100.0 1.6E-75 3.5E-80 552.2 36.1 299 8-310 2-314 (324)
8 PRK13966 nrdF2 ribonucleotide- 100.0 1.9E-72 4E-77 528.7 35.8 299 14-329 11-322 (324)
9 PRK12759 bifunctional gluaredo 100.0 4.6E-72 9.9E-77 542.2 35.0 294 16-313 97-403 (410)
10 PF00268 Ribonuc_red_sm: Ribon 100.0 5.2E-70 1.1E-74 505.5 33.5 278 8-287 2-281 (281)
11 PRK13965 ribonucleotide-diphos 100.0 9.5E-70 2.1E-74 512.5 34.1 290 15-310 23-325 (335)
12 PRK13967 nrdF1 ribonucleotide- 100.0 2.2E-67 4.8E-72 494.3 36.4 295 12-311 7-313 (322)
13 cd01049 RNRR2 Ribonucleotide R 100.0 2.3E-67 5E-72 489.6 33.8 272 17-289 1-286 (288)
14 cd07911 RNRR2_Rv0233_like Ribo 100.0 2.2E-50 4.7E-55 373.7 31.0 249 27-276 9-269 (280)
15 PRK08326 ribonucleotide-diphos 100.0 5.4E-50 1.2E-54 375.1 31.0 249 16-276 22-289 (311)
16 PF11583 AurF: P-aminobenzoate 98.5 1.7E-05 3.8E-10 74.4 20.6 177 37-223 47-234 (304)
17 cd01057 AAMH_A Aromatic and Al 98.0 0.005 1.1E-07 61.0 24.7 219 53-276 68-301 (465)
18 PF02332 Phenol_Hydrox: Methan 97.8 0.011 2.3E-07 53.5 21.5 163 55-221 66-232 (233)
19 TIGR02156 PA_CoA_Oxy1 phenylac 97.5 0.076 1.6E-06 49.4 23.2 217 55-289 16-259 (289)
20 PRK13778 paaA phenylacetate-Co 97.4 0.1 2.2E-06 49.0 23.2 203 56-276 35-253 (314)
21 cd01050 Acyl_ACP_Desat Acyl AC 97.4 0.022 4.8E-07 53.2 18.7 168 35-221 24-210 (297)
22 cd01058 AAMH_B Aromatic and Al 97.4 0.058 1.3E-06 50.7 21.6 165 52-219 89-257 (304)
23 cd00657 Ferritin_like Ferritin 97.4 0.012 2.6E-07 46.0 14.3 112 84-212 18-129 (130)
24 PF05138 PaaA_PaaC: Phenylacet 97.3 0.14 3E-06 47.1 24.5 206 54-275 8-225 (263)
25 PF03405 FA_desaturase_2: Fatt 95.9 0.29 6.2E-06 46.3 14.4 175 25-221 13-216 (330)
26 PRK13654 magnesium-protoporphy 95.6 0.4 8.8E-06 45.0 13.8 208 52-283 72-293 (355)
27 CHL00185 ycf59 magnesium-proto 95.3 0.73 1.6E-05 43.2 14.3 208 52-283 68-289 (351)
28 PF11266 DUF3066: Protein of u 95.2 1.8 3.9E-05 37.2 20.8 199 57-275 4-207 (219)
29 PRK14983 aldehyde decarbonylas 95.2 0.86 1.9E-05 39.6 13.3 199 57-275 14-217 (231)
30 PRK13654 magnesium-protoporphy 94.5 0.056 1.2E-06 50.5 4.8 45 173-217 96-142 (355)
31 TIGR02029 AcsF magnesium-proto 94.5 0.063 1.4E-06 49.8 5.0 44 173-216 86-131 (337)
32 cd01047 ACSF Aerobic Cyclase S 94.4 1.8 4E-05 40.1 14.2 208 52-283 52-273 (323)
33 COG3396 Uncharacterized conser 94.4 4 8.7E-05 37.3 22.5 216 55-289 11-253 (265)
34 TIGR02029 AcsF magnesium-proto 94.3 2.5 5.4E-05 39.5 15.0 208 52-283 62-283 (337)
35 cd01047 ACSF Aerobic Cyclase S 94.2 0.069 1.5E-06 49.2 4.7 45 173-217 76-122 (323)
36 CHL00185 ycf59 magnesium-proto 94.0 0.078 1.7E-06 49.4 4.7 44 173-216 92-137 (351)
37 PLN00179 acyl- [acyl-carrier p 94.0 1.2 2.6E-05 42.7 12.6 114 95-221 157-273 (390)
38 cd01041 Rubrerythrin Rubreryth 93.7 2.4 5.1E-05 34.6 12.5 106 85-215 25-132 (134)
39 PLN02508 magnesium-protoporphy 93.7 1.4 3.1E-05 41.3 12.1 208 52-283 68-289 (357)
40 PF04305 DUF455: Protein of un 93.4 6.2 0.00013 36.1 17.0 105 99-220 104-212 (253)
41 PLN02508 magnesium-protoporphy 93.2 0.084 1.8E-06 49.3 3.4 45 173-217 92-138 (357)
42 cd01044 Ferritin_CCC1_N Ferrit 90.8 7.4 0.00016 31.3 14.2 103 84-213 18-123 (125)
43 TIGR02158 PA_CoA_Oxy3 phenylac 89.8 15 0.00032 33.3 21.1 175 86-275 15-199 (237)
44 COG1633 Uncharacterized conser 89.5 13 0.00028 32.1 15.3 125 84-217 44-170 (176)
45 cd07908 Mn_catalase_like Manga 83.2 7.3 0.00016 32.4 8.0 62 181-242 39-119 (154)
46 cd01051 Mn_catalase Manganese 82.4 29 0.00062 29.3 12.3 105 91-216 51-155 (156)
47 cd01045 Ferritin_like_AB Uncha 82.2 23 0.00049 28.0 16.2 38 84-121 18-55 (139)
48 PF02915 Rubrerythrin: Rubrery 81.6 8.6 0.00019 30.5 7.6 112 85-212 19-136 (137)
49 cd07908 Mn_catalase_like Manga 79.8 33 0.00072 28.4 12.7 112 84-211 38-152 (154)
50 PF10118 Metal_hydrol: Predict 75.2 66 0.0014 29.3 17.8 135 71-218 36-175 (253)
51 PF03405 FA_desaturase_2: Fatt 65.8 47 0.001 31.6 9.2 37 85-121 176-212 (330)
52 TIGR03225 benzo_boxB benzoyl-C 65.5 1.4E+02 0.003 29.1 13.2 209 44-275 86-302 (471)
53 cd01055 Nonheme_Ferritin nonhe 64.6 79 0.0017 26.0 9.8 56 186-241 32-97 (156)
54 PF13668 Ferritin_2: Ferritin- 64.0 75 0.0016 25.5 14.1 98 89-213 34-135 (137)
55 PF08671 SinI: Anti-repressor 63.6 4.3 9.2E-05 24.3 1.1 28 236-263 2-29 (30)
56 cd01046 Rubrerythrin_like rubr 62.8 64 0.0014 25.8 8.3 55 181-240 25-79 (123)
57 cd00907 Bacterioferritin Bacte 61.2 52 0.0011 26.9 7.8 58 184-241 32-98 (153)
58 cd01046 Rubrerythrin_like rubr 60.7 85 0.0018 25.0 15.0 97 85-215 25-121 (123)
59 PF02915 Rubrerythrin: Rubrery 60.6 15 0.00033 29.0 4.4 70 167-240 11-100 (137)
60 PLN00179 acyl- [acyl-carrier p 59.1 53 0.0012 31.8 8.2 42 85-126 233-275 (390)
61 cd01050 Acyl_ACP_Desat Acyl AC 58.2 67 0.0015 30.1 8.6 41 85-125 168-211 (297)
62 COG1592 Rubrerythrin [Energy p 57.9 1.2E+02 0.0026 25.9 14.0 103 83-218 26-131 (166)
63 cd01041 Rubrerythrin Rubreryth 54.9 89 0.0019 25.1 8.1 57 182-238 26-87 (134)
64 cd01051 Mn_catalase Manganese 54.3 1.2E+02 0.0027 25.4 9.0 36 85-120 120-155 (156)
65 PF14518 Haem_oxygenas_2: Iron 52.7 57 0.0012 25.0 6.3 77 106-186 15-92 (106)
66 PF00268 Ribonuc_red_sm: Ribon 51.3 1.1E+02 0.0025 28.0 9.1 87 137-230 36-124 (281)
67 PF06945 DUF1289: Protein of u 49.1 19 0.00042 24.2 2.6 22 48-69 25-46 (51)
68 cd00657 Ferritin_like Ferritin 46.4 63 0.0014 24.2 5.7 31 188-218 26-56 (130)
69 cd00907 Bacterioferritin Bacte 41.1 1.9E+02 0.0042 23.4 16.0 110 88-217 32-141 (153)
70 COG1528 Ftn Ferritin-like prot 39.9 2E+02 0.0043 24.6 7.9 54 185-241 33-99 (167)
71 COG1633 Uncharacterized conser 39.2 2.5E+02 0.0054 24.1 10.1 45 167-217 37-81 (176)
72 PF12902 Ferritin-like: Ferrit 38.4 88 0.0019 28.1 6.0 39 180-219 20-58 (227)
73 PRK09614 nrdF ribonucleotide-d 37.4 1.3E+02 0.0028 28.4 7.2 77 137-218 39-117 (324)
74 cd01049 RNRR2 Ribonucleotide R 37.1 3.3E+02 0.0071 24.9 11.6 68 156-226 46-114 (288)
75 PF03810 IBN_N: Importin-beta 36.5 34 0.00073 24.3 2.5 34 30-69 39-72 (77)
76 PF05067 Mn_catalase: Manganes 36.2 1.3E+02 0.0027 28.1 6.7 42 80-121 154-195 (283)
77 cd01044 Ferritin_CCC1_N Ferrit 35.7 1E+02 0.0023 24.4 5.5 39 182-220 20-58 (125)
78 cd01052 DPSL DPS-like protein, 35.0 2.4E+02 0.0052 22.7 8.3 58 184-241 33-110 (148)
79 PF06556 ASFV_p27: IAP-like pr 33.9 50 0.0011 25.8 3.0 44 266-309 35-84 (131)
80 PRK13967 nrdF1 ribonucleotide- 30.8 2.5E+02 0.0053 26.6 8.0 77 137-218 39-117 (322)
81 COG1592 Rubrerythrin [Energy p 29.7 1.2E+02 0.0026 26.0 5.0 35 181-215 28-62 (166)
82 PTZ00072 40S ribosomal protein 29.7 86 0.0019 26.1 4.0 56 180-238 35-98 (148)
83 PF03070 TENA_THI-4: TENA/THI- 29.1 3.6E+02 0.0079 23.0 20.1 151 85-244 50-208 (210)
84 TIGR00754 bfr bacterioferritin 28.8 3.3E+02 0.0072 22.4 9.7 58 184-241 33-99 (157)
85 PF13668 Ferritin_2: Ferritin- 28.7 3E+02 0.0066 21.9 7.8 33 85-117 103-135 (137)
86 COG4445 MiaE Hydroxylase for s 26.9 4.1E+02 0.0088 22.8 7.9 36 85-121 133-168 (203)
87 COG3313 Predicted Fe-S protein 26.1 66 0.0014 23.6 2.4 24 48-71 30-53 (74)
88 cd07355 HN_L-delphilin-R2_like 24.2 2.6E+02 0.0057 20.7 5.2 17 55-71 15-31 (80)
89 cd01055 Nonheme_Ferritin nonhe 22.9 4.2E+02 0.009 21.5 15.1 111 88-217 30-140 (156)
90 cd01048 Ferritin_like_AB2 Unch 22.7 2.1E+02 0.0046 23.2 5.2 51 191-241 28-99 (135)
91 COG3687 Predicted metal-depend 22.3 6.2E+02 0.014 23.3 15.8 148 60-218 36-187 (280)
92 PF13108 DUF3969: Protein of u 22.2 2E+02 0.0043 22.7 4.6 71 196-276 25-95 (108)
93 PF06175 MiaE: tRNA-(MS[2]IO[6 21.1 5E+02 0.011 23.6 7.5 37 84-121 174-210 (240)
No 1
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=100.00 E-value=3e-87 Score=632.02 Aligned_cols=324 Identities=74% Similarity=1.248 Sum_probs=312.1
Q ss_pred CCCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 039934 2 PSIPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLEN 81 (329)
Q Consensus 2 ~~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~ 81 (329)
+.|++|+||++|++|++++|++|||+|++|++++++||.|+|||+++|+.||++||+.||++++++|++|+++|++|+++
T Consensus 7 ~~~~~e~il~~~~~~~~~~p~kY~~~~~ly~~~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~ 86 (330)
T PTZ00211 7 ENEEEEPLLKENPDRFVLFPIKYPDIWRMYKKAEASFWTAEEIDLGNDLKDWEKLNDGERHFIKHVLAFFAASDGIVLEN 86 (330)
T ss_pred cccccCccccCCCCcceecCCccHHHHHHHHHHHHcCCChhhcchhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHH
Q 039934 82 LAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERL 161 (329)
Q Consensus 82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~l 161 (329)
+...+++.++.||+++++++|+++|+||+++||+++++++.||.++.++|++++++|.|++|++|+.+++++++++++++
T Consensus 87 ~~~~~~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~~~f~~~~~~p~i~~K~~~~~~~~~~~~~~~~~l 166 (330)
T PTZ00211 87 LAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFHAIETIPAIKKKAEWAAKWINSSNSFAERL 166 (330)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcchHHHHHH
Confidence 98889999999999999999999999999999999999998899999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhH
Q 039934 162 IAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 162 v~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~ 241 (329)
++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++.+||++|.+|+.
T Consensus 167 v~~~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~i~~l~~~ave~E~~~~~ 246 (330)
T PTZ00211 167 VAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLPRERVQEIIKEAVEIEREFIC 246 (330)
T ss_pred HHHHHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhhhhhccccCCCcccccccccccccccccCCCCCCCc
Q 039934 242 DALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNH 321 (329)
Q Consensus 242 ~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~~ 321 (329)
++++++++||+.+++++||+|+||+||++||++++|+++||+|||+.++..+++||||+++|+|+|++...++ |++
T Consensus 247 ~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~f~~~nP~~w~~~~~~~~~tnFFe~~~t~Y~k~~~~~~~----~~~ 322 (330)
T PTZ00211 247 DALPVDLIGMNSRLMAQYIEFVADRLLVALGVPKIYNSKNPFDWMDMISLQGKTNFFEKRVGEYQKAGVMAER----TSK 322 (330)
T ss_pred HHcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCcCCCCCCchHHHhccccccccccccchhhhhcccccccc----ccc
Confidence 9999999999999999999999999999999999999999999998877778999999999999999776433 245
Q ss_pred ccccCCCC
Q 039934 322 VFKMDEDF 329 (329)
Q Consensus 322 ~~~~~~~f 329 (329)
.|+|||||
T Consensus 323 ~~~~~~df 330 (330)
T PTZ00211 323 VFSLDADF 330 (330)
T ss_pred cccccCCC
Confidence 79999998
No 2
>PLN02492 ribonucleoside-diphosphate reductase
Probab=100.00 E-value=3.1e-86 Score=624.07 Aligned_cols=323 Identities=87% Similarity=1.401 Sum_probs=310.8
Q ss_pred CCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039934 7 EPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARF 86 (329)
Q Consensus 7 e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~ 86 (329)
|+||.+|++|++++|++|||+|++|++++++||.|+|||+++|+.||++||+.||++++++|++|+++|++|++++...+
T Consensus 1 e~~l~en~~r~~~~p~~Y~~~~~ly~~~~~~fW~peEi~ls~D~~dw~~Lt~~Er~~~~~il~~~~~~D~~v~~~~~~~~ 80 (324)
T PLN02492 1 EPLLAENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSADLKDWEKLTDDERHFISHVLAFFAASDGIVLENLAARF 80 (324)
T ss_pred CcccccCCCCceecCCCcHHHHHHHHHHHHcCCChhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 039934 87 MKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFAC 166 (329)
Q Consensus 87 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~ 166 (329)
++.++.||+++++++|+++|+||+++||+++++++.||.++.++|++++++|.|++|++|+.+++++.++++++++++++
T Consensus 81 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~i~~tl~~d~~~~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~lva~~~ 160 (324)
T PLN02492 81 MKEVQVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPKEKDRLFNAIETIPCVAKKADWALRWIDSSASFAERLVAFAC 160 (324)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998889999999999999999999999999999888889999999999
Q ss_pred HHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhHhhcCC
Q 039934 167 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDALPC 246 (329)
Q Consensus 167 lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~~~ 246 (329)
+||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++++.++|++++++||++|.+|++++++.
T Consensus 161 lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~~~~v~~l~~eav~~E~~~~~~~~~~ 240 (324)
T PLN02492 161 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLSEERVKEIVCEAVEIEKEFVCDALPC 240 (324)
T ss_pred hhHHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhhhhhccccCCCcccccccccccccccccCCCC-CCCccccc
Q 039934 247 ALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGN-GGNHVFKM 325 (329)
Q Consensus 247 ~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~-~~~~~~~~ 325 (329)
+++||+.+.+++||+|+||+||++||++++|+++||+|||+.++..+++||||+++|+|+|++.+.+.+.. +++++|+|
T Consensus 241 ~~~Gl~~~~~~~yi~y~ad~~L~~lG~~~~f~~~nP~~w~~~~~~~~~tnFFe~~~t~Y~k~~~~~~~~~~~~~~~~~~~ 320 (324)
T PLN02492 241 ALVGMNADLMSQYIEFVADRLLVALGYEKVYNVVNPFDWMELISLQGKTNFFEKRVGEYQKAGVMSSLNGGGADNHVFSL 320 (324)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCcCCCCCCchHHHhccccccccccccchhhhhcccccccccccccccceecc
Confidence 99999999999999999999999999999999999999998887778999999999999999888776532 23567999
Q ss_pred CCCC
Q 039934 326 DEDF 329 (329)
Q Consensus 326 ~~~f 329 (329)
||||
T Consensus 321 ~~df 324 (324)
T PLN02492 321 DEDF 324 (324)
T ss_pred CCCC
Confidence 9999
No 3
>KOG1567 consensus Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-85 Score=579.69 Aligned_cols=324 Identities=71% Similarity=1.161 Sum_probs=315.8
Q ss_pred CCCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 039934 2 PSIPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLEN 81 (329)
Q Consensus 2 ~~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~ 81 (329)
+.+++|++|.+++.|++++|++|+.+|+.|||++++||+++|||+++|..||.+|++.||..+.++|++++++|++|.++
T Consensus 20 ~~~~~e~ll~~~~~rfv~fpi~y~~iw~~ykkaeasfwtaeevdl~kd~~dw~~L~~~er~fIs~vlaffaasdGivnen 99 (344)
T KOG1567|consen 20 EGEKDEPLLMENPRRFVMFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLDDWEKLNDDERHFISHVLAFFAASDGIVNEN 99 (344)
T ss_pred ccccccccccCCCCCceecccchHHHHHHHHhhhcccCcHHHhccccchhhHHHcChhhhhhHHHHHHHHhccccchhHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChh-HHHH
Q 039934 82 LAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSET-FAER 160 (329)
Q Consensus 82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~-~~~~ 160 (329)
+..++...++.||+|++|++|+++|+||++.||.++++++.||+||+.+|+++.+.|.+++|++|+++|+.++.+ |+++
T Consensus 100 l~Erfs~evqv~ear~fygfqIaiENIHSEmYSlLidtyIrD~ker~~LFnAI~t~p~vk~KAdWalrWI~d~~s~faeR 179 (344)
T KOG1567|consen 100 LVERFSQEVQVPEARCFYGFQIAIENIHSEMYSLLIDTYIRDPKEREFLFNAIETIPEVKKKADWALRWISDKDSLFAER 179 (344)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhhHHHHHHHHHHHHHhcCCCccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976544 9999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhh
Q 039934 161 LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFV 240 (329)
Q Consensus 161 lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~ 240 (329)
+|||+++|||+|.|+|+.+|||.++|+|||++-.+++|+|||.+|+.|+|.++.+|+++++++.|++++.+||++|.+|.
T Consensus 180 lvAFAavEGIFFSgsFasIFWLKKRGlMPGLTfSNELIsrdeglh~dFacll~~~l~~kp~~~ri~eII~eAV~IEqef~ 259 (344)
T KOG1567|consen 180 LVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFSHLKKKPNEERIEEIITEAVEIEQEFL 259 (344)
T ss_pred HHHHHHHhhhhcccchhhhhhhhhcCCCCccccchhhhhhccCCcccHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhhhhhccccCCCcccccccccccccccccCCCCCCC
Q 039934 241 CDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGN 320 (329)
Q Consensus 241 ~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~ 320 (329)
..++|..++|+|.+.|.+||+++||++|..||+++.|+++||++||+.+++.+|+||||+||++||++++|.+.. +
T Consensus 260 ~eaLPv~liGMN~~lM~qYIEFVADrLL~~lG~~K~Yn~~NPFdfMEnISl~GKTNFFEKrVseYQk~~vMs~~~----~ 335 (344)
T KOG1567|consen 260 TEALPVNLIGMNCDLMSQYIEFVADRLLVELGNEKYYNAENPFDFMENISLAGKTNFFEKRVSEYQKAGVMSNEP----E 335 (344)
T ss_pred HhccchhhhccCHHHHHHHHHHHHHHHHHHhCccceecCCCchHHHHHhhhccccchHHhhhHHhhhchhccCCc----c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998754 6
Q ss_pred cccccCCCC
Q 039934 321 HVFKMDEDF 329 (329)
Q Consensus 321 ~~~~~~~~f 329 (329)
++|++|+||
T Consensus 336 ~~F~ld~dF 344 (344)
T KOG1567|consen 336 NVFTLDADF 344 (344)
T ss_pred ceeccccCC
Confidence 699999998
No 4
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=2.2e-77 Score=571.73 Aligned_cols=305 Identities=30% Similarity=0.603 Sum_probs=284.2
Q ss_pred CCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHh
Q 039934 4 IPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWES---LTADEKHFITHVLAFFAASDGIVLE 80 (329)
Q Consensus 4 ~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~---L~~~er~~~~~~l~~~~~~d~~v~~ 80 (329)
-.+++|++|+++..+++|++|||+|++|+++.++||.|+|||+++|+.||++ ||+.||++++++|++|+++|++|++
T Consensus 36 ~~~~~i~~g~~~~~~~~p~kY~~~~~~y~~~~~nfW~peEI~ls~Di~dw~~~~~Lt~~Er~~~~~il~ff~~~Ds~v~~ 115 (369)
T PRK07209 36 VDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKSPNGLTEDERRIVKRNLGFFSTADSLVAN 115 (369)
T ss_pred ccccceecCCCCccccCCcccHHHHHHHHHHHhCCCCchhcCccccHHHHccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899998888899999999999999999999999999999999999974 9999999999999999999999999
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC-------
Q 039934 81 NLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG------- 153 (329)
Q Consensus 81 ~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~------- 153 (329)
++.+.+++.++.||+++|+++|+++|+||+++||+++++++.+++ ++|+++.++|.+++|++|+.++++.
T Consensus 116 nl~~~l~~~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~---e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~ 192 (369)
T PRK07209 116 NIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEG---EIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFK 192 (369)
T ss_pred hHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHhCHHHHHHHHHHHHHHHhccccccc
Confidence 998889999999999999999999999999999999999987664 5899999999999999999988742
Q ss_pred ------ChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC-----
Q 039934 154 ------SETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS----- 221 (329)
Q Consensus 154 ------~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~----- 221 (329)
++++++++++++ ++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.++++++.+.|
T Consensus 193 ~~~~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~~~~~ 272 (369)
T PRK07209 193 TGTPENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGIAEQYQYILRDESMHLNFGIDLINQIKLENPHLWTA 272 (369)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccH
Confidence 345899999986 58999999999999999999999999999999999999999999999999987654
Q ss_pred --HHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC-CCCCCchhhh-hhccccCCCc
Q 039934 222 --EERVKGIVKEAVEIEREFVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVY-GVTNPFDWME-LISLQGKTNF 297 (329)
Q Consensus 222 --~~~i~~~~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y-~~~nP~~w~~-~~~~~~~~nF 297 (329)
.++|++++++||++|++|+.++++.+++|||.+++++||+|+||+||.+||++++| +++||+|||+ .++.++++||
T Consensus 273 ~~~~~v~~l~~eav~~E~~~~~~~~~~~i~Gl~~~~~~~Yi~y~AnrrL~~LG~~~~y~~~~nP~~wm~~~~~~~~~tnF 352 (369)
T PRK07209 273 EFQAEIRELIKEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIANRRLQQIGLKPQYPGTENPFPWMSEMIDLKKEKNF 352 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcHhHHHHHhcccccCcc
Confidence 46899999999999999999999989999999999999999999999999999999 7899999995 4567788999
Q ss_pred cccccccccccccc
Q 039934 298 FEKRVGEYQKASVM 311 (329)
Q Consensus 298 Fe~~~~~Y~~~~~~ 311 (329)
||+|||+|+|++.+
T Consensus 353 FE~rvt~Y~~~~~~ 366 (369)
T PRK07209 353 FETRVIEYQTGGAL 366 (369)
T ss_pred cccchhhhhcccCc
Confidence 99999999998653
No 5
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-76 Score=553.74 Aligned_cols=305 Identities=35% Similarity=0.554 Sum_probs=276.2
Q ss_pred CCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039934 7 EPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARF 86 (329)
Q Consensus 7 e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~ 86 (329)
+.+.+++.+..+++|++|||+|.+|+++.++||.|+|||+++|+.||++||+.||+++.++|++|+++|++|++++.+.+
T Consensus 17 ~~~~~~~~~~~~~n~iky~~~~~~y~~~~~nFW~PeeI~ls~D~~dw~~Ls~~Ek~~~~~vl~~lt~lDsiq~~~~~~~~ 96 (348)
T COG0208 17 KIFNGNPTNAINWNPIKYPWALELYKKLTANFWLPEEIDLSNDIKDWKKLSDDEKDLIIRVLAFLTLLDSIQANNGVPAL 96 (348)
T ss_pred ccccCCccccccCCccccHHHHHHHHHHHhcCCCchhcCccccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34555555678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH-HHHhhcHHHHHHHHHHHHhhcC------C--hh-
Q 039934 87 MKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLF-RAFETVPCVAKKADWALNWIDG------S--ET- 156 (329)
Q Consensus 87 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~-~~~~~~~~l~~k~~~~~~~~~~------~--~~- 156 (329)
.++++.||+++++++|++||+||++|||+|+++++.++ +..++| +|+.+++.+++|++++.+.|++ + ..
T Consensus 97 ~~~v~~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e-~~~~~~~~~~~~~~~l~~k~~~i~~~y~~~~~~~~~~~~~~ 175 (348)
T COG0208 97 SPLVTTPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTE-DEDEVFDDWVATNEILQEKAEIILRYYDDLGDDPDDPLEEF 175 (348)
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCcccchHHH
Confidence 99999999999999999999999999999999997544 445655 7788999999999999987762 2 12
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC-------HHHHHHHH
Q 039934 157 FAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS-------EERVKGIV 229 (329)
Q Consensus 157 ~~~~lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~-------~~~i~~~~ 229 (329)
+.+++++.+++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+.| ++++++++
T Consensus 176 ~~~~~v~~~~lEgi~FYsGFa~~~~l~~r~kM~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e~~~~~t~e~~~~~~~l~ 255 (348)
T COG0208 176 LLKLVVASVILEGILFYSGFAYPLYLARRGKMPGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPELWTAELKDEIYDLF 255 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhHHHHHHHHHHH
Confidence 34555555799999999999999999999999999999999999999999999999999998865 35789999
Q ss_pred HHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCchhhhhh-ccccCCCccccccccccc
Q 039934 230 KEAVEIEREFVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVT-NPFDWMELI-SLQGKTNFFEKRVGEYQK 307 (329)
Q Consensus 230 ~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~-nP~~w~~~~-~~~~~~nFFe~~~~~Y~~ 307 (329)
.+||++|++|+.++++ +++|||.+.+++||+|+||+||++||++|+|+.. ||+||++.+ +..+++||||+++++|+|
T Consensus 256 ~~ave~E~~y~~~~~~-~~~Glt~d~~~~Yi~y~ankrL~~lG~~~~y~~~~NP~~~~~~~~~~~~~~dFFe~~~ssY~~ 334 (348)
T COG0208 256 KEAVELEKEYAEYLYP-GILGLTEDLVKQYIRYNANKRLQNLGLEPLYPAEENPIPWIELSLSADEKTDFFEGRVSSYQK 334 (348)
T ss_pred HHHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHHhhccccccCCccccccchHHh
Confidence 9999999999999998 5999999999999999999999999999999866 999999985 445899999999999999
Q ss_pred cccccc
Q 039934 308 ASVMSS 313 (329)
Q Consensus 308 ~~~~~~ 313 (329)
|+....
T Consensus 335 ~~~~~~ 340 (348)
T COG0208 335 GSVASE 340 (348)
T ss_pred hhcccC
Confidence 986544
No 6
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=1.2e-75 Score=560.50 Aligned_cols=309 Identities=22% Similarity=0.335 Sum_probs=281.9
Q ss_pred CCCCCCCCCCCCCc-cccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 039934 4 IPEEPLLTPNPDRF-CMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENL 82 (329)
Q Consensus 4 ~~~e~il~~~~~~~-~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l 82 (329)
..+|+|++|++.++ .+.|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+.+|++|++++
T Consensus 13 ~~~~~~~~g~~~~~~~~~~~~y~~~~~lyk~~~~~fW~peEv~ls~D~~dw~~Lt~~Er~~~~~~L~~lt~lDs~q~~~~ 92 (376)
T PRK09101 13 QLKEPMFFGQSVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 92 (376)
T ss_pred cccCCccCCCCccccccCchhhHHHHHHHHHHHhCCCCcccccccccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45699999997654 68899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCC--------
Q 039934 83 AARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGS-------- 154 (329)
Q Consensus 83 ~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~-------- 154 (329)
...+++.++.||+++++++|+++|+||+++||+|+++++.+|+ ++|+++.++|.|++|++|+.+++++.
T Consensus 93 ~~~~~~~i~~pE~~~~~~~q~~~E~IHs~sYs~il~tl~~~~~---e~f~~~~~~~~i~~K~~~i~~~y~~~~~~~~~~~ 169 (376)
T PRK09101 93 NVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEEILKRAKDISSYYDDLIEMTSYYH 169 (376)
T ss_pred HHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHhCHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 8889999999999999999999999999999999999987775 69999999999999999999887531
Q ss_pred ----------------------hhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHH
Q 039934 155 ----------------------ETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 212 (329)
Q Consensus 155 ----------------------~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l 212 (329)
..+++++++++++||++|||||+++++|+++|+|+|++++|++|+|||++|+.|++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~lva~~~lEgi~FyssFa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l 249 (376)
T PRK09101 170 LLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHM 249 (376)
T ss_pred hcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1244566888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHc--cCC---------HHHHHHHHHHHHHHHHHhhHhhc-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC-
Q 039934 213 YSLLRN--KLS---------EERVKGIVKEAVEIEREFVCDAL-PCALVGMNGALMSQYIEFVADRLLGALGCGKVYGV- 279 (329)
Q Consensus 213 ~~~l~~--~~~---------~~~i~~~~~eav~~E~~~~~~~~-~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~- 279 (329)
++.+.. +.| .++|++++++||++|++|+++++ +++++||+.+.+++||+|+||+||.+||++++|++
T Consensus 250 ~~~l~~~~e~p~~~~~~~~~~~~v~~l~~eave~E~~~~~~l~~~~~i~Gl~~~~~~~Yi~Y~An~rL~~LG~~~~f~~~ 329 (376)
T PRK09101 250 LNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQEKEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 329 (376)
T ss_pred HHHHhhcccChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence 999985 322 24899999999999999999988 55799999999999999999999999999999986
Q ss_pred CCCchhhhhh-cccc-CCCcccccccccccccccccCC
Q 039934 280 TNPFDWMELI-SLQG-KTNFFEKRVGEYQKASVMSSLN 315 (329)
Q Consensus 280 ~nP~~w~~~~-~~~~-~~nFFe~~~~~Y~~~~~~~~~~ 315 (329)
+||+|||+.+ +..+ ++||||+++++|++++...+-+
T Consensus 330 ~nP~~wm~~~~~~~~~~~nffE~~~~~Y~~~~~~~~~~ 367 (376)
T PRK09101 330 SNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSEVD 367 (376)
T ss_pred CCCHHHHHHHhcCCccccccccccHHHHhhccCcccCC
Confidence 7999999775 4444 7899999999999998876654
No 7
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=1.6e-75 Score=552.16 Aligned_cols=299 Identities=25% Similarity=0.389 Sum_probs=278.3
Q ss_pred CCCCCC-CCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039934 8 PLLTPN-PDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARF 86 (329)
Q Consensus 8 ~il~~~-~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~ 86 (329)
++++|+ .++.+++|++|||+|++|++++++||.|+|||+++|+.||++||+.||++++++|++|+++|++|++++.+.+
T Consensus 2 ~~~~g~~~~~~~~~~~~y~~~~~~y~~~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~ 81 (324)
T PRK09614 2 KIIGGNTYSAINWNKIEDPWDYEAWKRLTANFWLPEEVPLSNDLKDWKKLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNL 81 (324)
T ss_pred CCcCCCCcccccCCCcccHHHHHHHHHHHhCCCCCccccccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 456665 4678999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC--ChhHHHHHHHH
Q 039934 87 MKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG--SETFAERLIAF 164 (329)
Q Consensus 87 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~--~~~~~~~lv~~ 164 (329)
.+.++.||+++++++|+++|+||+++||+++++++ ++.++.++|+++.++|++++|++|+.+++++ ...+.++++++
T Consensus 82 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl~-~~~~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~ 160 (324)
T PRK09614 82 MPDITTPEEEAVLANIAFMEAVHAKSYSYIFSTLC-SPEEIDEAFEWAEENPYLQKKADIIQDFYEPLKKKILRKAAVAS 160 (324)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999995 5566688999999999999999999999974 23577888888
Q ss_pred HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCH-------HHHHHHHHHHHHHHH
Q 039934 165 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSE-------ERVKGIVKEAVEIER 237 (329)
Q Consensus 165 ~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~-------~~i~~~~~eav~~E~ 237 (329)
+++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++.+. ++|++++++||++|+
T Consensus 161 ~~lEgi~f~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~~~~~~~~v~~l~~~ave~E~ 240 (324)
T PRK09614 161 VFLEGFLFYSGFYYPLYLARQGKMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYENEE 240 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988763 689999999999999
Q ss_pred HhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCC--CCCCchhhhhhcc-c-cCCCcccccccccccccc
Q 039934 238 EFVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYG--VTNPFDWMELISL-Q-GKTNFFEKRVGEYQKASV 310 (329)
Q Consensus 238 ~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~--~~nP~~w~~~~~~-~-~~~nFFe~~~~~Y~~~~~ 310 (329)
+|++++++ ++| +.+++++||+|+||+||++||++|+|+ ++||+|||+.++. . +++||||+++++|+++++
T Consensus 241 ~~~~~~~~--~~G-~~~~~~~yi~y~an~~L~~lG~~~~f~~~~~np~~w~~~~~~~~~~~~nFFe~~~~~Y~~~~~ 314 (324)
T PRK09614 241 AYTELLYD--IVG-LAEDVKKYIRYNANKRLMNLGLEPLFPEEEEVNPIWLNGLSNNADENHDFFEGKGTSYVKGAT 314 (324)
T ss_pred HHHHHHHC--cCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCChHHHHHhccCCCeecCCCcCCccceeeccc
Confidence 99999996 999 999999999999999999999999995 7899999988743 3 478999999999999864
No 8
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=1.9e-72 Score=528.72 Aligned_cols=299 Identities=22% Similarity=0.310 Sum_probs=272.3
Q ss_pred CCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChH
Q 039934 14 PDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVS 93 (329)
Q Consensus 14 ~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~ 93 (329)
....+++|++|||++.+|+++.++||+|+|||+++|+.+|++||+.||++++++|++|+++|++|++++...+.+.++.|
T Consensus 11 ~~~~n~n~~~~~~~~~~~~~~~~nfW~peEi~l~~D~~dw~~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~~~~~~~~~p 90 (324)
T PRK13966 11 VSAINWNRLQDEKDAEVWDRLTGNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTP 90 (324)
T ss_pred cccccCCCcccHHHHHHHHHHHhCCCCccccCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999887899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 039934 94 EARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFS 173 (329)
Q Consensus 94 E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~ 173 (329)
|+++|+++|+++|+||+++||+++++++ ++.++.++|+++.++|.|++|++|+.++++++. .++++++++++||++||
T Consensus 91 e~~~~~~~q~~~E~IHsesYs~il~tl~-~~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~~-~~~~~va~~~lEgi~Fy 168 (324)
T PRK13966 91 HEEAVLTNIAFMESVHAKSYSQIFSTLC-STAEIDDAFRWSEENRNLQRKAEIVLQYYRGDE-PLKRKVASTLLESFLFY 168 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999996 567889999999999999999999999998765 47999999999999999
Q ss_pred hHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---H----HHHHHHHHHHHHHHHHhhHhhcCC
Q 039934 174 GSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---E----ERVKGIVKEAVEIEREFVCDALPC 246 (329)
Q Consensus 174 s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---~----~~i~~~~~eav~~E~~~~~~~~~~ 246 (329)
|||+++++|+++|+|+|++++|++|+|||++|+.|++.+++.+..+.+ . +++++++++||++|++|+.+++
T Consensus 169 sgF~~~~~l~~~~km~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~~~~~~i~~l~~~av~~E~e~~~~~~-- 246 (324)
T PRK13966 169 SGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFELYDNEVEYTQDLY-- 246 (324)
T ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999997764333 2 4679999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC----CCCchhhhhhccc--cCCCcccccccccccccccccCCCCCCC
Q 039934 247 ALVGMNGALMSQYIEFVADRLLGALGCGKVYGV----TNPFDWMELISLQ--GKTNFFEKRVGEYQKASVMSSLNGNGGN 320 (329)
Q Consensus 247 ~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~----~nP~~w~~~~~~~--~~~nFFe~~~~~Y~~~~~~~~~~~~~~~ 320 (329)
+++||+. ++++||+|+||+||++||++|+|+. .||+ |++..+.. +++||||+|||+|+||++
T Consensus 247 ~~~Gl~~-~v~~Yi~y~An~~L~~lG~e~~f~~~~~~~nP~-~~~~~~~~~~~~~dFFe~r~t~Y~k~~~---------- 314 (324)
T PRK13966 247 DEVGLTE-DVKKFLRYNANKALMNLGYEALFPRDETDVNPA-ILSALSPNADENHDFFSGSGSSYVIGKA---------- 314 (324)
T ss_pred hcCCChH-HHHHHHHHHHHHHHHHCCCCCCCCCCcCCCCCh-hHHhhccccccccCCCCCCCcccccccc----------
Confidence 5789986 6999999999999999999999975 6998 56555543 688999999999999744
Q ss_pred cccccCCCC
Q 039934 321 HVFKMDEDF 329 (329)
Q Consensus 321 ~~~~~~~~f 329 (329)
++..||||
T Consensus 315 -~~~~ddd~ 322 (324)
T PRK13966 315 -VVTEDDDW 322 (324)
T ss_pred -ccccccCc
Confidence 45566665
No 9
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=4.6e-72 Score=542.23 Aligned_cols=294 Identities=29% Similarity=0.459 Sum_probs=271.1
Q ss_pred CccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChH
Q 039934 16 RFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWE--SLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVS 93 (329)
Q Consensus 16 ~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~--~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~ 93 (329)
+.+++|++|||+|++|+++.++||.|+|||+++|+.||+ +||+.||++++++|++|+++|++|++++.+.+++.++.|
T Consensus 97 ~~~~~p~kY~~~~~ly~~~~~~fW~peEi~ls~D~~dw~~~~Lt~~Er~~~~~il~~~~~lD~~v~~~~~~~~~~~~~~p 176 (410)
T PRK12759 97 SKTYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNGKITKVEKEYITNILRLFTQSDVAVGQNYYDQFIPLFKNN 176 (410)
T ss_pred ccccCCCccHHHHHHHHHHHHcCCCccccchhhhHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHH
Confidence 558899999999999999999999999999999999996 699999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHh
Q 039934 94 EARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG-SETFAERLIAFACVEGIFF 172 (329)
Q Consensus 94 E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~-~~~~~~~lv~~~~lEgi~f 172 (329)
|+++++++|+++|+||+++||+++++++.++ +.|+.+.++|.+++|++|+.++... ...+++++++++++||++|
T Consensus 177 E~~~~~~~q~~~E~iHsesYs~il~tl~~~~----~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~lv~~~~lEgi~F 252 (410)
T PRK12759 177 EIRNMLGSFAAREGIHQRAYALLNDTLGLPD----SEYHAFLEYKAMTDKIDFMMDADPTTRRGLGLCLAKTVFNEGVAL 252 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHHhhHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997654 3599999999999999999876653 3357888888899999999
Q ss_pred HhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC-------HHHHHHHHHHHHHHHHHhhHhhcC
Q 039934 173 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS-------EERVKGIVKEAVEIEREFVCDALP 245 (329)
Q Consensus 173 ~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~-------~~~i~~~~~eav~~E~~~~~~~~~ 245 (329)
||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+.| .++|++++++||++|++|++++++
T Consensus 253 ys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~v~~~~~eave~E~~~~~~~~~ 332 (410)
T PRK12759 253 FASFAMLLNFQRFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDRFIELAYE 332 (410)
T ss_pred HHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcChHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999976654 468999999999999999998885
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCchhhhhhcc-ccCCCccccccccccccccccc
Q 039934 246 C-ALVGMNGALMSQYIEFVADRLLGALGCGKVYGV-TNPFDWMELISL-QGKTNFFEKRVGEYQKASVMSS 313 (329)
Q Consensus 246 ~-~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~-~nP~~w~~~~~~-~~~~nFFe~~~~~Y~~~~~~~~ 313 (329)
. .++||+.+++++||+|+||+||++||++|+|++ +||+|||+.+.. .+++||||+++|+|++++.+.+
T Consensus 333 ~~~i~Gl~~~~~~~Yiky~an~~L~~LG~~~~f~~~~nP~~w~~~~~~~~~~~nFFE~rvt~Y~~~~~~~~ 403 (410)
T PRK12759 333 LGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTNFFENRVTEYEVAGLTGS 403 (410)
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCChhHHHHHhccccccCCccccHHHHhhcccccc
Confidence 4 699999999999999999999999999999986 899999986543 4689999999999999976544
No 10
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=100.00 E-value=5.2e-70 Score=505.47 Aligned_cols=278 Identities=42% Similarity=0.770 Sum_probs=259.5
Q ss_pred CCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039934 8 PLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFM 87 (329)
Q Consensus 8 ~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~ 87 (329)
+||.+|+.|| +|++||++|++|+|++++||.|+|||+++|+.+|++||+.||++++++|++|+.+|++|++++.+.++
T Consensus 2 ~~l~~~~~~~--~pi~y~~~~~ly~k~~~~fW~peEi~~~~D~~~~~~Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i~ 79 (281)
T PF00268_consen 2 PLLKENAINW--NPIKYPWFWDLYKKAESNFWTPEEIDMSKDIKDWKKLSEEEREAYKRILAFFAQLDSLVSENLLPNIM 79 (281)
T ss_dssp TTTSCGTTCT--TS-SSHHHHHHHHHHHHT---GGGS-GGGHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHhC--CCCCCHHHHHHHHHHHhCCCCchhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Confidence 6889999888 99999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 039934 88 KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACV 167 (329)
Q Consensus 88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~l 167 (329)
+.+++||+++++++|+++|+||+++||+++++++.|+.++.++|+++.++|.+++|++++.++++++.++.+++++++++
T Consensus 80 ~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~~~~~~~~~~~~~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 159 (281)
T PF00268_consen 80 PEITSPEIRAFLTFQAFMEAIHAESYSYILDSLGNDPKERDEIFDWVEEDPELQKKLDWIEKWYEDNDSLAEKLVASVIL 159 (281)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhHHhhHHHHHHhhchhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999987888899999999999999999999999998777788999999999
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHhhHhhcC
Q 039934 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRN--KLSEERVKGIVKEAVEIEREFVCDALP 245 (329)
Q Consensus 168 Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~--~~~~~~i~~~~~eav~~E~~~~~~~~~ 245 (329)
|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++. +++++.|++++++||++|.+|++..++
T Consensus 160 Egi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~i~~l~~eav~~E~~~~~~~~~ 239 (281)
T PF00268_consen 160 EGILFYSGFAYILYLARQGKMPGLAEIIKLIMRDESLHVEFGIYLFRTLVEENKPEEEEIYELFDEAVELEIEFIDDILP 239 (281)
T ss_dssp HHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999994 555789999999999999999998888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhhh
Q 039934 246 CALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWME 287 (329)
Q Consensus 246 ~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~ 287 (329)
+++.|++.+++++||+|+||+||.+||++|+|++.||.+||+
T Consensus 240 ~~~~gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~~~~~ 281 (281)
T PF00268_consen 240 GDIIGLNKEDIKQYIKYNANRRLRNLGFEPIYNVENPFPWME 281 (281)
T ss_dssp GGGTTBSHHHHHHHHHHHHHHHHHHTTS--SSTTCCSSTTHC
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Confidence 889999999999999999999999999999999999999985
No 11
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=9.5e-70 Score=512.53 Aligned_cols=290 Identities=18% Similarity=0.295 Sum_probs=259.4
Q ss_pred CCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHH
Q 039934 15 DRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSE 94 (329)
Q Consensus 15 ~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E 94 (329)
+..++.|++|||++++|+++.++||.|+|||+++|+.+|++||+.||++++++|++|+++|++|+.++.....+....++
T Consensus 23 ~~~n~~~~~~~~~~~~~~~~~~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~~la~lt~~Dslq~~~~~~~~~~e~~~~~ 102 (335)
T PRK13965 23 RSINWNYLNDDKDLEVWNRVTQNFWLPEKVPVSNDLNSWRSLGEDWQQLITRTFTGLTLLDTVQATVGDVAQIPHSQTDH 102 (335)
T ss_pred ccccccCcccHHHHHHHHHHHHcCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchH
Confidence 35688899999999999999999999999999999999999999999999999999999999999776555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 039934 95 ARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSG 174 (329)
Q Consensus 95 ~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~s 174 (329)
.++++++|+++|+||+++||+++++++.++ ++.++|+++.++|.|++|++|+.+++++. +.++++++++++||++|||
T Consensus 103 e~~~l~~q~~~E~IHs~sYs~il~tl~~~~-~~~~~f~~~~~~p~l~~K~~~i~~~~~~~-~~~~~~va~~~lEGi~Fys 180 (335)
T PRK13965 103 EQVIYTNFAFMVAIHARSYGTIFSTLCSSE-QIEEAHEWVVSTESLQRRARVLIPYYTGD-DPLKSKVAAAMMPGFLLYG 180 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHhcCHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999997655 67789999999999999999999999764 4589999999999999999
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCH-------HHHHHHHHHHHHHHHHhhHhhcCCC
Q 039934 175 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSE-------ERVKGIVKEAVEIEREFVCDALPCA 247 (329)
Q Consensus 175 ~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~-------~~i~~~~~eav~~E~~~~~~~~~~~ 247 (329)
||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+..++++ ++|++++++||++|++|+.++++
T Consensus 181 gFa~~~~L~~~gkM~g~~~~i~~I~RDE~lH~~~~~~l~~~~~~~~~~e~~~~~~~~v~~l~~eav~~E~~~~~~~~~-- 258 (335)
T PRK13965 181 GFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYELIDLEKAYLRELYA-- 258 (335)
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999887665543 46899999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC----CC--chhhhhhccccCCCcccccccccccccc
Q 039934 248 LVGMNGALMSQYIEFVADRLLGALGCGKVYGVT----NP--FDWMELISLQGKTNFFEKRVGEYQKASV 310 (329)
Q Consensus 248 ~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~----nP--~~w~~~~~~~~~~nFFe~~~~~Y~~~~~ 310 (329)
.+|++.+ +++||+|+||+||++||++|+|++. || ++|+.. ...+++||||+|+++|+||++
T Consensus 259 ~~g~~~~-~~~Yi~y~an~~L~~LG~~~~f~~~~~~~~p~~~~~~~~-~~~~~~dFFe~~~t~Y~~~~~ 325 (335)
T PRK13965 259 GFDLAED-AIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQLSA-RADENHDFFSGNGSSYVMGIT 325 (335)
T ss_pred CCCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcHHHHhhCc-cccccCCCCCCCCCcCeeccc
Confidence 6899866 9999999999999999999999754 55 334442 235789999999999999854
No 12
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=2.2e-67 Score=494.27 Aligned_cols=295 Identities=17% Similarity=0.261 Sum_probs=263.0
Q ss_pred CCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC
Q 039934 12 PNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQ 91 (329)
Q Consensus 12 ~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~ 91 (329)
++....+...++|+|...+|+++.++||.|+|||+++|+.||++||+.||++++++|++++++|++|+.++.+.+...++
T Consensus 7 ~~~~~~nwn~~~~~~~~~~~~~~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~~ 86 (322)
T PRK13967 7 ERVHAINWNRLLDAKDLQVWERLTGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDAV 86 (322)
T ss_pred cccccCCCCCccchhhHHHHHHHHhCCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcC
Confidence 33456777889999999999999999999999999999999999999999999999999999999999988878899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 039934 92 VSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIF 171 (329)
Q Consensus 92 ~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~ 171 (329)
.||+++++++|+++|+||++|||+++++++. +.++.++|+++.++|.+++|++|+.+++++. ...+++++++++||++
T Consensus 87 ~~e~~~~l~~~~~~E~iHs~sYs~il~tl~~-~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~-~~~~~~v~~~~lEgi~ 164 (322)
T PRK13967 87 TPHEEAVLTNMAFMESVHAKSYSSIFSTLCS-TKQIDDAFDWSEQNPYLQRKAQIIVDYYRGD-DALKRKASSVMLESFL 164 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHhcCHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999954 6777899999999999999999999999864 4578888899999999
Q ss_pred hHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC-------HHHHHHHHHHHHHHHHHhhHhhc
Q 039934 172 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS-------EERVKGIVKEAVEIEREFVCDAL 244 (329)
Q Consensus 172 f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~-------~~~i~~~~~eav~~E~~~~~~~~ 244 (329)
|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++....+++ .+.+.+++.+++++|++|+.+++
T Consensus 165 FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~~~l~~~e~~~~~~~~~~l~~~~~~~E~~~~~~~~ 244 (322)
T PRK13967 165 FYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHTLYANEIDYAHDLY 244 (322)
T ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999997755554544 23588999999999999999876
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCc-hhhh-hhcc--ccCCCccccccccccccccc
Q 039934 245 PCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVT-NPF-DWME-LISL--QGKTNFFEKRVGEYQKASVM 311 (329)
Q Consensus 245 ~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~-nP~-~w~~-~~~~--~~~~nFFe~~~~~Y~~~~~~ 311 (329)
+++||+.+ +++||+|+||+||++||++|+|+.. +|. ||+. .++. .+++||||+|+|+|+||++.
T Consensus 245 --~~~Gl~~~-v~~yi~Y~an~rL~~LGl~~~f~~~~~~~nP~~~~~~~~~~~~~~dFFe~r~t~Y~k~~~~ 313 (322)
T PRK13967 245 --DELGWTDD-VLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAALDPGAGENHDFFSGSGSSYVMGTHQ 313 (322)
T ss_pred --CcCCchHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcHHHHhhccccCccCCCCCCCCccccccCcc
Confidence 68999865 8899999999999999999999753 554 5552 2332 35889999999999998553
No 13
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=100.00 E-value=2.3e-67 Score=489.56 Aligned_cols=272 Identities=59% Similarity=0.972 Sum_probs=259.8
Q ss_pred ccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHH
Q 039934 17 FCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEAR 96 (329)
Q Consensus 17 ~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~ 96 (329)
++++|++|||+|++|++++++||.|+|||+++|+.+|++||+.||++++++|++|+.+|++|++++.+.+.+.++.||++
T Consensus 1 ~~~~~~~y~~~~~ly~~~~~~~W~p~ei~~~~D~~~~~~l~~~er~~~~~~la~~~~~d~~v~~~~~~~~~~~~~~~e~~ 80 (288)
T cd01049 1 FNLNPIKYPWAWELYKKAEANFWTPEEIDLSKDLKDWEKLTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQIPEAR 80 (288)
T ss_pred CCCCccccHHHHHHHHHHHHcCCChhhcchhhhHHHHhHCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcChHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCC-----hhHHHHHHHHHHHHHHH
Q 039934 97 AFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGS-----ETFAERLIAFACVEGIF 171 (329)
Q Consensus 97 ~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~-----~~~~~~lv~~~~lEgi~ 171 (329)
+++++|+++|+||+++||+++++++.++ ++.++|+++.++|.+++|++++.+++++. .++++++++++++||++
T Consensus 81 ~~~~~q~~~E~iH~e~Ys~il~~l~~~~-e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~~~~~lv~~~~lEgi~ 159 (288)
T cd01049 81 AFYGFQAFMENIHSESYSYILDTLGKDE-ERDELFEAIETDPALKKKADWILRWYDNLDDNTKESFAERLVAFAILEGIF 159 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc-cHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876 78899999999999999999999999753 47999999999999999
Q ss_pred hHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHHHHHhhHhhc
Q 039934 172 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKL-------SEERVKGIVKEAVEIEREFVCDAL 244 (329)
Q Consensus 172 f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~-------~~~~i~~~~~eav~~E~~~~~~~~ 244 (329)
|||||+++++|+++|+|||+++++++|+|||++|+.|++.+++.++.+. ..+.|++++++||++|++|+++++
T Consensus 160 f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~~av~~E~~~~~~~~ 239 (288)
T cd01049 160 FYSGFAAIFWLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAVELEKEFARDLL 239 (288)
T ss_pred HHHHHHHHHHHHHCCCccchHHHhHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998774 367899999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC--CCCchhhhhh
Q 039934 245 PCALVGMNGALMSQYIEFVADRLLGALGCGKVYGV--TNPFDWMELI 289 (329)
Q Consensus 245 ~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~--~nP~~w~~~~ 289 (329)
+.+++|++.+++++||+|+||+||.+||++++|++ .||++||+.+
T Consensus 240 ~~~~~g~~~~~~~~yi~y~an~~l~~lG~~~~f~~~~~nP~~~~~~~ 286 (288)
T cd01049 240 PDGILGLNKEDMKQYIEYVANRRLENLGLEKLFNVEDKNPFDWMELI 286 (288)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence 88999999999999999999999999999999987 8999999865
No 14
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=100.00 E-value=2.2e-50 Score=373.72 Aligned_cols=249 Identities=19% Similarity=0.252 Sum_probs=209.6
Q ss_pred HHHHHHHHHhC-CCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--hhcChHHHHHHHHHHH
Q 039934 27 IWEMYKKAEAS-FWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFM--KEVQVSEARAFYGFQI 103 (329)
Q Consensus 27 ~~~ly~k~~~~-fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~--~~~~~~E~~~~~~~q~ 103 (329)
.+++|++++++ ||+|+|||+++|+.+|++||+.||++++++|++|+++|++|+.++.+.+. ...+.||+++|+++|+
T Consensus 9 ~~~ly~~~~~~~~W~~~eid~s~D~~~w~~L~~~Er~~~~~~l~~f~~~D~~v~~~l~~~~~~~~~~~~~e~~~~l~~q~ 88 (280)
T cd07911 9 PMKLFEKGKRKGFWNPADIDFSQDREDWEQLSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRLEEEMYLTQFL 88 (280)
T ss_pred hHHHHHHHHccCCCCHHHcCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 46899999999 99999999999999999999999999999999999999999999987665 5567899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC--ChhHHHHHHH-HHHHHHHHhHhHHHHHH
Q 039934 104 AIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG--SETFAERLIA-FACVEGIFFSGSFCAIF 180 (329)
Q Consensus 104 ~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~--~~~~~~~lv~-~~~lEgi~f~s~F~~~~ 180 (329)
++|++|+++|++++++++.+++ .....++....+.+.++..+....++. +..++++.+. ..++||++|||||++++
T Consensus 89 ~~EaiH~esYs~~l~tl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEGilf~sgF~~~~ 167 (280)
T cd07911 89 FEEAKHTDFFRRWLDAVGVSDD-LSDLHTAVYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEGVLAETGYYAWR 167 (280)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc-hhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999976542 223344444444455555555555543 3345554443 46899999999999977
Q ss_pred -HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCH--HHHHHHHHHHHHHHHHhhHhhc---CCCCCCCCHH
Q 039934 181 -WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSE--ERVKGIVKEAVEIEREFVCDAL---PCALVGMNGA 254 (329)
Q Consensus 181 -~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~--~~i~~~~~eav~~E~~~~~~~~---~~~~~Gl~~~ 254 (329)
+++++|+|||++++|++|.|||++|+.||+.+++.++.+.|. +.+.+.++++++.|.++++.++ +..+.|++.+
T Consensus 168 ~~l~~~g~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~~~~e~~~~l~~~av~~~~~~~~~~~~~~~g~~~~ 247 (280)
T cd07911 168 TICEKRGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDANWDVFEERMNELVPHALGLIDEIFELYDEMPFGLDPD 247 (280)
T ss_pred HHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCCHH
Confidence 699999999999999999999999999999999999877542 5678888888888888877664 4459999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC
Q 039934 255 LMSQYIEFVADRLLGALGCGKV 276 (329)
Q Consensus 255 ~~~~yi~y~an~~l~~lG~~~~ 276 (329)
++++|++|.||+||.+||++|-
T Consensus 248 ~~~~Y~~~~a~~rL~~lg~~~~ 269 (280)
T cd07911 248 ELMQYAVDQFQRRLGYIERARG 269 (280)
T ss_pred HHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999984
No 15
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=5.4e-50 Score=375.07 Aligned_cols=249 Identities=20% Similarity=0.311 Sum_probs=217.2
Q ss_pred CccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCh---
Q 039934 16 RFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQV--- 92 (329)
Q Consensus 16 ~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~--- 92 (329)
+|+.+| .++|++++++||+|+|||+++|+.+|++||+.||+++++++++|+.+|++|+.++.+ ++..++.
T Consensus 22 ~w~~~~------~~ly~~~~~~fW~peEidls~D~~dw~~Lt~~Er~~~~~ila~f~~~d~~V~~nl~~-~i~~~~~~~~ 94 (311)
T PRK08326 22 NWNSFP------MKLFAKGNAKFWNPADIDFSRDAEDWEKLSDEERDYATRLCAQFIAGEEAVTLDIQP-LISAMAAEGR 94 (311)
T ss_pred CcchhH------HHHHHHHHHcCCCHHhcCccchHHHHHhCCHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHhhccccCC
Confidence 556555 569999999999999999999999999999999999999999999999999999864 5666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHH----HHHHhhc---CChhHHHHHHHHH
Q 039934 93 SEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKAD----WALNWID---GSETFAERLIAFA 165 (329)
Q Consensus 93 ~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~----~~~~~~~---~~~~~~~~lv~~~ 165 (329)
||+++|+++|+++|++|+++|++++++++.+. +++.++.++|.+++|.. +....+. +++.++++++++.
T Consensus 95 ~e~~~~l~~q~~~EaiH~e~Y~~~le~l~~~~----~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~ 170 (311)
T PRK08326 95 LEDEMYLTQFAFEEAKHTEAFRRWFDAVGVTE----DLSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYN 170 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999996443 36777778899999853 4444443 2345777878764
Q ss_pred -HHHHHHhHhHHHHH-HHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCH------HHHHHHHHHHHHHHH
Q 039934 166 -CVEGIFFSGSFCAI-FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSE------ERVKGIVKEAVEIER 237 (329)
Q Consensus 166 -~lEgi~f~s~F~~~-~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~------~~i~~~~~eav~~E~ 237 (329)
++|||+|||||+++ ++++++|+|||+++++++|.|||++|+.||+.+++.++.+.+. +.+.+++.+||+. +
T Consensus 171 ~~iEGi~f~sgF~~~~~~l~~~~~mpgl~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~~~~~~i~el~~~av~~-~ 249 (311)
T PRK08326 171 HVVEGVLAETGYYAWRKICVTRGILPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDSNWDVFEERMNELLPLALGL-I 249 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHH-H
Confidence 79999999999997 6899999999999999999999999999999999999977552 5788999999995 8
Q ss_pred HhhHhhcCCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCCC
Q 039934 238 EFVCDALPCALV-GMNGALMSQYIEFVADRLLGALGCGKV 276 (329)
Q Consensus 238 ~~~~~~~~~~~~-Gl~~~~~~~yi~y~an~~l~~lG~~~~ 276 (329)
+|+.+.++.+++ |+|.+++++||+|+||+||++||+...
T Consensus 250 ~~~~~~~~~~i~~Gl~~~~~~~Yi~y~an~RL~~iG~~~~ 289 (311)
T PRK08326 250 DEIFALYGDQIPFELSNDEFVDYAADRGQRRLGAIERARG 289 (311)
T ss_pred HHHHHhccCcccCCCCHHHHHHHHHHHHHHHHHHhCcccc
Confidence 999888877787 999999999999999999999999874
No 16
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=98.53 E-value=1.7e-05 Score=74.40 Aligned_cols=177 Identities=17% Similarity=0.085 Sum_probs=99.5
Q ss_pred CCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHh----hcChHHHHHHHHHHHHHHH
Q 039934 37 SFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLA-----ARFMK----EVQVSEARAFYGFQIAIEN 107 (329)
Q Consensus 37 ~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~-----~~~~~----~~~~~E~~~~~~~q~~~E~ 107 (329)
..|.|.+...--.-+-|..||+++|..+.+.-........+..+... ..++. .-.....+.+...++.+|+
T Consensus 47 ~~~~p~~~~pl~gtp~~~~l~~~~r~~l~~~~~~~~~~~~i~~E~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~DE~ 126 (304)
T PF11583_consen 47 RPWLPPELLPLYGTPLWERLSEEQRIELLRHEWANYLSQGIWFEQGLVNPAFRMLARDRFPSDPDDDAKRYALTEIADEA 126 (304)
T ss_dssp S-SS-GGGSTTTT-HHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-STTTT-HHHHHHHHHHHHHHH
T ss_pred ccCCCcccCccCCCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHH
Confidence 45665555444555789999999999887664444444444444322 23333 2245667777778899999
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHH-HHHHHHHhHhHHHHHHHHH-hc
Q 039934 108 IHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAF-ACVEGIFFSGSFCAIFWLK-KR 185 (329)
Q Consensus 108 iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~-~~ 185 (329)
.|+.+|.++++..+... .+-. ...-+....+...+....... ......++. .+.|.+.- .....+. ..
T Consensus 127 rH~~mf~~~~~~~~~~~----~l~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~lv~Ee~i~----~~~~~~~~D~ 196 (304)
T PF11583_consen 127 RHSLMFARAINRTGRRR----GLAP-LPPPYPPRRLLRRLARLLPPW-ERGLLFFAFALVAEEIID----AYQREIARDE 196 (304)
T ss_dssp HHHHHHHHHHHHHHHHT----T-----S--HHHHHHHHHHHTS-SHH-HHHHHHHHHHHHHHHSBH----HHHHHHHT-S
T ss_pred HHHHHHHHHHHHHhhhc----Cccc-CCCCCchHHHHHHHHHhcccc-cchHHHHHHHHHHHHHHH----HHHHHhhcCC
Confidence 99999999999885100 0000 111122222223333333211 111122222 35677642 1122233 34
Q ss_pred CCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHH
Q 039934 186 GLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEE 223 (329)
Q Consensus 186 ~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~ 223 (329)
+.-|-+.++++...+||++|+.|+...++....+.++.
T Consensus 197 ~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~l~~~ 234 (304)
T PF11583_consen 197 TIQPLVRQVMRIHVRDEARHIAFAREELRRVWPRLSPA 234 (304)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 46788888999999999999999999999999888754
No 17
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=97.97 E-value=0.005 Score=60.98 Aligned_cols=219 Identities=16% Similarity=0.090 Sum_probs=130.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cHHHHHHH
Q 039934 53 WESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKN-SDEKSRLF 131 (329)
Q Consensus 53 ~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d-~~e~~~~~ 131 (329)
+..+++.-.++++..++.+..++-...... ..+.+..+.++++..+.+|+..|.+|+..=.+....+.++ |.- ...-
T Consensus 68 ~~~~dp~W~~~Lk~~~~a~~~~Ey~a~~~~-a~~~R~a~s~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GF-d~~~ 145 (465)
T cd01057 68 YEKVDPRWVEAMKLFLGAITPGEYAAVRGM-AMLGRFAPAAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGF-DWAQ 145 (465)
T ss_pred cccCCHHHHHHHHHHhccccHHHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-ChHH
Confidence 456889999999999999888886655444 3577889999999999999999999999877666655431 100 0001
Q ss_pred HHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHH-hcCCCcchHHHHHHHHhhhhhHHHHH
Q 039934 132 RAFETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDFA 209 (329)
Q Consensus 132 ~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~-~~~~l~g~~~~i~~I~rDE~~H~~~~ 209 (329)
..+.++|..+.=-..+.+.+.+ .+..+.+++.. +.|.++=-..|..+..++ .+|= ..+..++.-|+.||++|...|
T Consensus 146 ~~~~~~~~~~~~R~~~ed~~~t-~D~~E~~valnlvfE~~ftnl~~~~~~~~Aa~nGD-~~tptv~~S~QsDe~Rh~~~g 223 (465)
T cd01057 146 KAFHGNWYAGAAKRFFFDGFIT-GDAVEAALALQFVFETAFTNLLFVALASDAAANGD-YATPTVFLSIQSDEARHMANG 223 (465)
T ss_pred HHHhhCcHHHHHHHHHHHHHhc-CCHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHHHhH
Confidence 2334666655422333332222 24678888865 577753222222222332 2231 234557777889999999999
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHHHhhH--------hhcCCCCCCCCHHHHHHHHHHHHHHHHHHc---CCCCC
Q 039934 210 CLLYSLLRNKL-SEERVKGIVKEAVEIEREFVC--------DALPCALVGMNGALMSQYIEFVADRLLGAL---GCGKV 276 (329)
Q Consensus 210 ~~l~~~l~~~~-~~~~i~~~~~eav~~E~~~~~--------~~~~~~~~Gl~~~~~~~yi~y~an~~l~~l---G~~~~ 276 (329)
..++..+.+.+ +...+..-++...-.=.+.++ +..+...... ++.+..||.-..-..+..| |++++
T Consensus 224 ~~ll~~l~~Dp~N~~~lq~wld~w~wr~~~a~~~l~g~~~dY~~~~r~~s~-~e~~~~wi~~~~~~~~~~L~~~Gl~~P 301 (465)
T cd01057 224 YPTLVLLENDPDNVPLLQRDLDKAFWRQHRLFDALVGMLMDYGTPKRVMSW-KEFWEEWIEEDFGSYFKDLEKYGLKKP 301 (465)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhhhhHHHHccCCcCcccH-HHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99996555533 334444444333332222222 1112222222 3556666655555667777 99764
No 18
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=97.77 E-value=0.011 Score=53.48 Aligned_cols=163 Identities=15% Similarity=0.063 Sum_probs=117.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcHHHHHHH
Q 039934 55 SLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI---KNSDEKSRLF 131 (329)
Q Consensus 55 ~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~---~d~~e~~~~~ 131 (329)
.|++.-++.++..++.+...+-....+. ..+....+.++++.++.+|+++|.+|..--.+++..+. .++.--. =
T Consensus 66 ~l~~~w~~~l~~~~~~~~~~E~ga~~~~-a~~~r~~~~~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~--k 142 (233)
T PF02332_consen 66 ALDPRWVEFLKRHLGPLRHAEYGAQMAS-AYIARFAPGTAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAA--K 142 (233)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCT--H
T ss_pred cCCHHHHHHHHHHcCCcchHHHHHHHHH-HHHHhhcCcHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHH--H
Confidence 3599999999999999988886655444 35788899999999999999999999999888888773 2221000 2
Q ss_pred HHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHH
Q 039934 132 RAFETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 210 (329)
Q Consensus 132 ~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~ 210 (329)
..+.++|..+-=-.++.+.+-. .++.+.+++.. ++|+++.---|.-+-..+..+==..+..++..+..||.+|...+.
T Consensus 143 ~~w~~~p~wq~~R~~vE~~~~~-~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~~~q~d~~r~~~~~~ 221 (233)
T PF02332_consen 143 EAWLNDPAWQPLRRLVEDLLVT-YDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTSSIQSDEARHMRWGD 221 (233)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTS-SSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCchhHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788877655555554322 24678888876 679986554444444343332235677889999999999999999
Q ss_pred HHHHHHHccCC
Q 039934 211 LLYSLLRNKLS 221 (329)
Q Consensus 211 ~l~~~l~~~~~ 221 (329)
.+++.+.++.+
T Consensus 222 al~~~~~~~~~ 232 (233)
T PF02332_consen 222 ALFKMALEDDP 232 (233)
T ss_dssp HHHHHHHCTTT
T ss_pred HHHHHHHhCCC
Confidence 99999887654
No 19
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=97.50 E-value=0.076 Score=49.36 Aligned_cols=217 Identities=12% Similarity=0.034 Sum_probs=144.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 039934 55 SLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAF 134 (329)
Q Consensus 55 ~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~ 134 (329)
.||+.-|..+.+.+..++-.+-+.+.-. ...+...|.-|.+..++..+-+|.=|+..+-.+..+++.+.+ +....+
T Consensus 16 ~mp~~yr~~L~r~l~~~AdsEli~a~r~-~eW~~~AP~LeediAl~niaqDelGHar~ly~~a~~LG~~r~---ed~~a~ 91 (289)
T TIGR02156 16 WMPAAYRKTLIRQISQHAHSEIVGMLPE-GNWITRAPTLKRKLILMAKVQDEAGHGLYLYAAAETLGVSRE---ELLDAL 91 (289)
T ss_pred cCCHHHHHHHHHHHHHHhhHHHHhcccc-ccHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcH---HHHHHH
Confidence 3888889999999999888776655443 346788899999999999999999999999999999965432 222222
Q ss_pred hhcHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHhHhHHHHHHHH-HhcCCCcchHHHHHHHHhhhhhHHHHHHHH
Q 039934 135 ETVPCVAKKADWALNWID-GSETFAERLIAFACVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCDFACLL 212 (329)
Q Consensus 135 ~~~~~l~~k~~~~~~~~~-~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l-~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l 212 (329)
... +.++.. ..+ ...+|+..++-. +|+.++.+...- -.+.--+-++.+..+|++.|+-|...+...
T Consensus 92 ~r~-----~~~f~n-l~e~P~~dwA~tivr~------~l~D~~~~~~~~~L~~SSy~plA~ia~Ki~KEe~yH~rh~~~w 159 (289)
T TIGR02156 92 LTG-----KAKYSS-IFNYPTLTWADIGVIG------WLVDGAAIMNQTPLCRCSYGPYSRAMVRICKEESFHQRQGYEI 159 (289)
T ss_pred hcC-----hHhhcc-chhCCCCCHHHHHHHH------HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 122211 122 123465544432 344555555421 134456789999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHhhHhhcCC--------------CCCCCCHHHHHHHHHHHHHHHHHHcCCCCC--
Q 039934 213 YSLLRNKLSEERVKGIVKEAVEIEREFVCDALPC--------------ALVGMNGALMSQYIEFVADRLLGALGCGKV-- 276 (329)
Q Consensus 213 ~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~~~--------------~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~-- 276 (329)
+..|.. ..++-++.+.+|++.=--++...|+. ++...+.+++.+--.-.....|..+|+.-+
T Consensus 160 l~rL~~--GT~esr~r~Q~Ald~~Wp~~~emFg~~d~e~~~~~~~~~~Gi~~~~n~eLR~~w~~~v~~~l~~agL~~P~~ 237 (289)
T TIGR02156 160 MLTLAR--GTQEQRQMAQDALNRWWWPSLMMFGPHDADSPNSGQSTKWKIKRNSNDELRQKFIDATVPQLESLGLTIPDP 237 (289)
T ss_pred HHHHHc--CCHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 998874 34566777777777655555555521 222246677766556677788999998753
Q ss_pred ---CCC------CCCchhhhhh
Q 039934 277 ---YGV------TNPFDWMELI 289 (329)
Q Consensus 277 ---y~~------~nP~~w~~~~ 289 (329)
|+. -.|++|=+.+
T Consensus 238 ~~~~~e~~~~~~~~~~~w~~~~ 259 (289)
T TIGR02156 238 ELKQNEERGHWVYGEIDWDEFK 259 (289)
T ss_pred ccccccccCCcCCCCCCHHHHH
Confidence 332 2577775543
No 20
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=97.43 E-value=0.1 Score=49.00 Aligned_cols=203 Identities=11% Similarity=0.002 Sum_probs=135.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Q 039934 56 LTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFE 135 (329)
Q Consensus 56 L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~ 135 (329)
||+.-|..+.+.+..++-.+-+.+.-+ ...+...|.-|.++.++..+-+|.=|+..+-.+..+++.+.+ +....+.
T Consensus 35 mp~~yr~~L~~~l~~laDseLi~a~r~-~eWi~~AP~LeediAl~niaqDelGHa~~ly~~aeeLG~~r~---e~~~a~~ 110 (314)
T PRK13778 35 MPDAYRKTLIRQISQHAHSEIVGMLPE-GNWITRAPSLKRKAILLAKVQDEAGHGLYLYSAAETLGVSRE---ELIDDLL 110 (314)
T ss_pred cCHHHHHHHHHHHHHHhhHHHHhcchh-ccHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcH---HHHHHHh
Confidence 788889889898888877665555444 346778899999999999999999999999999999965332 3333222
Q ss_pred hcHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHhHhHHHHHHHH-HhcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Q 039934 136 TVPCVAKKADWALNWID-GSETFAERLIAFACVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCDFACLLY 213 (329)
Q Consensus 136 ~~~~l~~k~~~~~~~~~-~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l-~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~ 213 (329)
. .+.++.. ..+ ...+|+..++.. +|+.+++++... -.+.--+-++.+...|++.|+-|...+...+
T Consensus 111 r-----~~~~f~n-~fe~P~~dwAdtvvr~------~L~D~a~~~~~~~L~~sSy~plA~~a~Ki~KEe~yH~rhg~~wl 178 (314)
T PRK13778 111 S-----GKAKYSS-IFNYPTLTWADVGVIG------WLVDGAAIMNQVPLCRCSYGPYARAMVRICKEESFHQRQGEEIL 178 (314)
T ss_pred c-----chHHhcc-cccCCCCCHHHHHHHH------HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222221 122 123455444322 344555554422 1344567789999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHhhHhhcCC--------------CCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Q 039934 214 SLLRNKLSEERVKGIVKEAVEIEREFVCDALPC--------------ALVGMNGALMSQYIEFVADRLLGALGCGKV 276 (329)
Q Consensus 214 ~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~~~--------------~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~ 276 (329)
..|... .++-++.+.+|++.=--++...|+. ++...+.+++.+=-.-.+...|..+|+.-+
T Consensus 179 ~rL~~G--T~esr~r~Q~Ald~~Wp~~~emFg~~d~~s~~~~~~~~~Gik~~~n~eLR~~w~~~v~~~l~~~gL~vP 253 (314)
T PRK13778 179 LALARG--TPAQKQMAQDALNRWWWPALMMFGPPDDDSPHSAQSMAWKIKRFSNDELRQKFVDATVPQAEVLGLTLP 253 (314)
T ss_pred HHHHhC--CHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 988753 4566777777777555555555521 222366667766555567778899997643
No 21
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=97.42 E-value=0.022 Score=53.16 Aligned_cols=168 Identities=15% Similarity=-0.006 Sum_probs=99.2
Q ss_pred HhCCCCCCccCccc-------cHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC-----hHHHHHH
Q 039934 35 EASFWTAEEVDLSQ-------DIRQWE----SLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQ-----VSEARAF 98 (329)
Q Consensus 35 ~~~fW~p~eid~~~-------D~~~~~----~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~-----~~E~~~~ 98 (329)
...-|.|+++=.-. +..+|. +||+..+.++...+--=-.+.+.+ ..+...+. .++...|
T Consensus 24 ~~~~W~p~d~lP~~~~~~f~~~~~~~~~~~~~L~~~~~~~l~~~~itEd~LP~Y~-----~~L~~~f~~~~~~~~~w~~w 98 (297)
T cd01050 24 VEKDWQPHDFLPDSASEDFDLDVKELRERAAELPDDARVALVGNLLTEEALPTYH-----SMLNRLFGLDDESPTAWARW 98 (297)
T ss_pred HhhccCCcccCCCCCCCChhhccccCchhhccCCHHHHHHHHHHHHHhhccHHHH-----HHHHHHcCcccccccHHHHH
Confidence 34678887764433 556673 688887776655432111222222 22333332 2788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHHhHhH
Q 039934 99 YGFQIAIENIHSEMYSLLLETYI-KNSDEKSRLFRAFETVPCVAKKADWALNWIDG--SETFAERLIAFACVEGIFFSGS 175 (329)
Q Consensus 99 ~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~--~~~~~~~lv~~~~lEgi~f~s~ 175 (329)
.....++|+.|+.+-..++-.-. .||.. +.. .+...+..-++. +.+....++.-.+.|..-+ ++
T Consensus 99 ~~~WtaEE~rHg~aL~~YL~~sg~vdp~~---le~---------~~~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT~-v~ 165 (297)
T cd01050 99 VRRWTAEENRHGDLLNKYLYLTGRVDPRA---LER---------TRQYLIGSGFDPGTDNSPYRGFVYTSFQELATR-IS 165 (297)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCCCHHH---HHH---------HHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHH-HH
Confidence 99999999999999888886542 24532 111 111223333331 1122334333335565432 33
Q ss_pred HHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC
Q 039934 176 FCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS 221 (329)
Q Consensus 176 F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~ 221 (329)
+.-+-.+.+ .-=|-++++...|++||.+|..|...+++.+.+..+
T Consensus 166 y~nl~~~a~-~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp 210 (297)
T cd01050 166 HRNTARLAG-AGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDP 210 (297)
T ss_pred HHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 443444442 245889999999999999999999999988875544
No 22
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=97.41 E-value=0.058 Score=50.74 Aligned_cols=165 Identities=12% Similarity=-0.005 Sum_probs=110.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cHH-HHH
Q 039934 52 QWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKN-SDE-KSR 129 (329)
Q Consensus 52 ~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d-~~e-~~~ 129 (329)
.+..|++.-++.++..++.+...+-....+. ..+....+.+.++.++.+|++.|.+|+.--+++...+.++ |.- -..
T Consensus 89 ~~~~ld~~w~~~l~~~l~p~~~~E~ga~~~~-a~~~r~~~~~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~~~~ 167 (304)
T cd01058 89 LAEALSPEWREFLARYLGPLRHVEHGLQMAN-AYVAQYAPSTTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFDGDA 167 (304)
T ss_pred ChhhCCHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHhhcchHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCchH
Confidence 4567999999999999988888775544443 3567788999999999999999999999877776555432 110 111
Q ss_pred HHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHH-HhcCCCcchHHHHHHHHhhhhhHHH
Q 039934 130 LFRAFETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCD 207 (329)
Q Consensus 130 ~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l-~~~~~l~g~~~~i~~I~rDE~~H~~ 207 (329)
--..|.++|.-+-=-+++.+.+-. .+.++.+++.. ++|+++----|.-+-.. +.+| =.-+..++..+..||++|..
T Consensus 168 ~k~~W~~dp~Wq~~R~~~E~~~~~-~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nG-D~~t~~l~~s~q~d~~Rh~~ 245 (304)
T cd01058 168 AKEAWEEDPAWQGLRELVEKLLVT-YDWGEAFVAQNLVFDPLVGELVRRELDRLAASNG-DTLTPLLTEFMLDDAQRHRR 245 (304)
T ss_pred HHHHHhcCchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHHHHHHH
Confidence 223456677655322333333222 34678888875 68987543333333222 2333 13466788999999999999
Q ss_pred HHHHHHHHHHcc
Q 039934 208 FACLLYSLLRNK 219 (329)
Q Consensus 208 ~~~~l~~~l~~~ 219 (329)
.+..+++.+.++
T Consensus 246 ~~~alvk~l~~~ 257 (304)
T cd01058 246 WTDALVKTAAED 257 (304)
T ss_pred HHHHHHHHHHcc
Confidence 999999988875
No 23
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=97.37 E-value=0.012 Score=46.00 Aligned_cols=112 Identities=17% Similarity=0.017 Sum_probs=72.4
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIA 163 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~ 163 (329)
..+...+++++.+.++..++.+|..|.+....++..++.+|...... .. ..........+....+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~------------~~-~~~~~~~~~~~~~~~l~~ 84 (130)
T cd00657 18 GQLAARAPDPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH------------LL-AAYALPKTSDDPAEALRA 84 (130)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------------HH-HhcccCCCccCHHHHHHH
Confidence 34566777999999999999999999999999999987655321111 00 111111222234444444
Q ss_pred HHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHH
Q 039934 164 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 212 (329)
Q Consensus 164 ~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l 212 (329)
....|.. ....|..+. +...-+.+.+++..+.+||..|..++...
T Consensus 85 ~~~~E~~-~~~~y~~~~---~~~~d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 85 ALEVEAR-AIAAYRELI---EQADDPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred HHHHHHH-HHHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567774 223333332 22225889999999999999999988754
No 24
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=97.30 E-value=0.14 Score=47.13 Aligned_cols=206 Identities=13% Similarity=0.063 Sum_probs=129.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHH
Q 039934 54 ESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNS-DEKSRLFR 132 (329)
Q Consensus 54 ~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~-~e~~~~~~ 132 (329)
..+|+..+..+.+.+..++-.+-+.+..+.. .....|..|.+..++..+-+|.-|+..+-.++..+.+.. ++-.-.|.
T Consensus 8 ~~~~~~~~~~L~~~l~~laD~elil~~r~~e-w~~~AP~LeediAl~~ia~DelGHAr~ly~ll~el~g~G~~~d~la~~ 86 (263)
T PF05138_consen 8 DEMPEEYREALIRYLLRLADDELILGQRLSE-WCGHAPSLEEDIALANIAQDELGHARLLYRLLEELEGEGRDEDDLAFL 86 (263)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHHHHHT-GGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHhChHHHhhhHHhH-HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHhh
Confidence 4689999999999998888777776666653 677889999999999999999999999999999983322 11111122
Q ss_pred HHhhcHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHhHhHHHHHHHH-HhcCCCcchHHHHHHHHhhhhhHHHHHH
Q 039934 133 AFETVPCVAKKADWALNWID-GSETFAERLIAFACVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCDFAC 210 (329)
Q Consensus 133 ~~~~~~~l~~k~~~~~~~~~-~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l-~~~~~l~g~~~~i~~I~rDE~~H~~~~~ 210 (329)
.-.. .. |+ ...++ ...+|...++.. +|+..+..+..- -.+.--+-++.+.++|.++|..|..++.
T Consensus 87 R~~~--~~--rn---~~l~e~p~~dwa~~v~r~------~l~d~~~~~~l~~l~~ssy~pla~~a~k~~kEe~yH~~h~~ 153 (263)
T PF05138_consen 87 RDAR--EF--RN---LLLFEQPNGDWADTVARQ------FLFDRAGKVLLEALADSSYEPLAAIAAKILKEEAYHLRHGE 153 (263)
T ss_dssp HHTT--CS---S---SGGGGS---SHHHHHHHH------HHHHHHHHHHHHHHTT-SBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc--hh--hh---hhhhccCCCCHHHHHHHH------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 00 00 01111 123465554432 233444443321 1455568899999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHhhHhhcC---------CCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q 039934 211 LLYSLLRNKLSEERVKGIVKEAVEIEREFVCDALP---------CALVGMNGALMSQYIEFVADRLLGALGCGK 275 (329)
Q Consensus 211 ~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~~---------~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~ 275 (329)
.-+++|... .++-++.+.+|++.=-.++...|+ ..+.+.+.+.+.+--.-.....|..+|++-
T Consensus 154 ~w~~rL~~g--t~es~~r~q~Al~~~wp~~~elF~~~~~~~~l~~~~~~~~~~~lr~~w~~~v~~~l~~~gL~~ 225 (263)
T PF05138_consen 154 DWLRRLGDG--TEESRERMQAALDRLWPYTLELFGPDDSEEALAWGGRAPDNEELRQRWLAEVVPVLEEAGLEV 225 (263)
T ss_dssp HHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHCC-S-HCHHHHHCTTSSS-HHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999988733 234555555555544444444442 245677777776666667888999999874
No 25
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=95.92 E-value=0.29 Score=46.34 Aligned_cols=175 Identities=17% Similarity=0.061 Sum_probs=92.2
Q ss_pred hHHHHHHHHHH---hCCCCCCccCccc-------cHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHH
Q 039934 25 PEIWEMYKKAE---ASFWTAEEVDLSQ-------DIRQWE----SLTADEKHFITHVLAFFAASDGIVLENLA---ARFM 87 (329)
Q Consensus 25 ~~~~~ly~k~~---~~fW~p~eid~~~-------D~~~~~----~L~~~er~~~~~~l~~~~~~d~~v~~~l~---~~~~ 87 (329)
|++-+...... +.-|.|.++=+-. ...+|. +||+.-+.++...+ +.-++|. ..+.
T Consensus 13 ~~v~~~~~~~l~~~~~~W~PhD~lP~~~~~~F~~~~~~w~~~~~~Lpd~~~~alv~~l--------lTEd~LPsY~~~l~ 84 (330)
T PF03405_consen 13 PVVEENLLRHLKPVEKDWQPHDFLPWSEGRNFFLGGKDWRPSQSTLPDDARVALVGNL--------LTEDNLPSYHRELA 84 (330)
T ss_dssp HHHHHHCHHHCH-CGGS--GGGGS-GCCSTTHHHCCHHHHHHHHTS-HHHHHHHHHHH--------HHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHhhCCCccccCCCCccccHhHhcccCCHhhccCCHHHHHHHHHHH--------HhhhhhhHHHHHHH
Confidence 44444444332 4689997764333 345662 57777666554433 2223332 1222
Q ss_pred hhcC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC--Chh
Q 039934 88 KEVQ--------VSEARAFYGFQIAIENIHSEMYSLLLETYI-KNSDEKSRLFRAFETVPCVAKKADWALNWIDG--SET 156 (329)
Q Consensus 88 ~~~~--------~~E~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~--~~~ 156 (329)
..+. ..+...|.+...++|++|+.+-..++-.-. .||.+ ++. .|...+.+-++. ...
T Consensus 85 ~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~-------lE~-----~r~~~i~~G~~~~~~~~ 152 (330)
T PF03405_consen 85 TLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSGRVDPVA-------LER-----TRMYLITAGFDPGFESD 152 (330)
T ss_dssp TSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-CCC-------CCH-----CCHHHHHH----S-TTH
T ss_pred hhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhCCCCHHH-------HHH-----HHHHHHhcCCCccCCCC
Confidence 2222 235788999999999999999877774332 25531 000 011122222221 111
Q ss_pred HHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC
Q 039934 157 FAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS 221 (329)
Q Consensus 157 ~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~ 221 (329)
-... ++|. +-|-.- ..++.-+-.++++.-=|-++++...|++||.+|..|.+.++..+....|
T Consensus 153 p~~~-~vYtsfQE~AT-~vsh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dP 216 (330)
T PF03405_consen 153 PYLG-FVYTSFQERAT-QVSHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDP 216 (330)
T ss_dssp HHHH-HHHHHHHHHHH-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred hHHH-HHHHHHHHHHH-HHHHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCc
Confidence 2233 2233 344322 1233333344433345889999999999999999999999988875544
No 26
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=95.64 E-value=0.4 Score=44.95 Aligned_cols=208 Identities=16% Similarity=0.153 Sum_probs=120.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Q 039934 52 QWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQ--VSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSR 129 (329)
Q Consensus 52 ~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~--~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~ 129 (329)
+|..|+++.|..+..-|-.-..++ .-|-.+-..+...+. +|++.-+++..+-+|++|+-+-+..+..++.
T Consensus 72 ~~d~l~~e~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l------- 143 (355)
T PRK13654 72 DWDHLDPETRKEFIDFLERSCTAE-FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFGL------- 143 (355)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCc-------
Confidence 588999999998776653322222 112223344556665 8999999999999999999987777776632
Q ss_pred HHHHHhhcHHHHHHHHHHHHhhcCChhHHH-HHHHH--HHHHHHHhHhHHHHHH-HHHhc--CCCcchHHHHHHHHhhhh
Q 039934 130 LFRAFETVPCVAKKADWALNWIDGSETFAE-RLIAF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 203 (329)
Q Consensus 130 ~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~-~lv~~--~~lEgi~f~s~F~~~~-~l~~~--~~l~g~~~~i~~I~rDE~ 203 (329)
-.+.+.|.+.-.+ ++.. +.|-| ++-|-|-+ .=|..++ .|.+. ..+--+=+-++.=+.||.
T Consensus 144 ----~lDLgfLtk~k~Y---------TfF~PkfIfYatYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEn 209 (355)
T PRK13654 144 ----SLDLGFLTKKKKY---------TFFPPKFIFYATYLSEKIGY-WRYITIYRHLEKHPEHRFHPIFKFFENWCQDEN 209 (355)
T ss_pred ----cccchhhccCCce---------eeeCcceeeehhHhHhhhhH-HHHHHHHHHHHhCcccccCchHHHHHHHhcccc
Confidence 2334444331111 1111 11222 24566632 2333343 46554 355556667778899999
Q ss_pred hHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHHhhHhhc---CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 039934 204 LHCDFACLLYSL---LRNKLSEERVKGIVKEAVEIEREFVCDAL---PCALVGMNGALMSQYIEFVADRLLGALGCGKVY 277 (329)
Q Consensus 204 ~H~~~~~~l~~~---l~~~~~~~~i~~~~~eav~~E~~~~~~~~---~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y 277 (329)
+|+.+...+++. |.+.+-..--...+.-+|=.-. |+.+.- -++.+||++.+....|--..|...+++ +|-..
T Consensus 210 RHGd~F~~lmraqP~ll~g~~~kLW~RFFLlsVfaTm-yl~d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rv-FP~~L 287 (355)
T PRK13654 210 RHGDFFALLMRAQPKLLKGWVNRLWIRFFLLAVFATM-YLRDHERPDFYEALGLDAREYDQEVIRKTNETSARV-FPVVL 287 (355)
T ss_pred hhHHHHHHHHhcCchhhcchHHHHHHHHHHHHHHhhe-eeecccchHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 999999987642 2222111111122222220000 111100 046789999999999999999988775 44444
Q ss_pred CCCCCc
Q 039934 278 GVTNPF 283 (329)
Q Consensus 278 ~~~nP~ 283 (329)
.+.||-
T Consensus 288 dvd~P~ 293 (355)
T PRK13654 288 DVDDPR 293 (355)
T ss_pred cCCChH
Confidence 567884
No 27
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=95.32 E-value=0.73 Score=43.16 Aligned_cols=208 Identities=16% Similarity=0.136 Sum_probs=118.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Q 039934 52 QWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEV--QVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSR 129 (329)
Q Consensus 52 ~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~ 129 (329)
+|..|+++.|..+..-|-.-..++ .-|-.+-..+...+ ++|.+.-+++..+-+|++|+-+-+..+..++.
T Consensus 68 ~~d~l~~e~r~~FidFLerScTaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l------- 139 (351)
T CHL00185 68 SWSNLDEKTKSLFVEFLERSCTAE-FSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDFNL------- 139 (351)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCc-------
Confidence 688999999987766553322222 11222333455666 45999999999999999999987777776632
Q ss_pred HHHHHhhcHHHHHHHHHHHHhhcCChhHHH-HHHHH--HHHHHHHhHhHHHHHH-HHHhc--CCCcchHHHHHHHHhhhh
Q 039934 130 LFRAFETVPCVAKKADWALNWIDGSETFAE-RLIAF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 203 (329)
Q Consensus 130 ~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~-~lv~~--~~lEgi~f~s~F~~~~-~l~~~--~~l~g~~~~i~~I~rDE~ 203 (329)
-.+...|.+.-.+ ++.. +.|-| ++-|-|-+ .=|..++ .|.+. ..+--+=+-++.=+.||.
T Consensus 140 ----~lDLgfLtk~rkY---------TfF~PkfI~YAtYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF~~FE~WCqDEn 205 (351)
T CHL00185 140 ----SLDLGFLTKSRKY---------TFFSPKFIFYATYLSEKIGY-WRYITIYRHLEKNPEYRIYPIFKFFESWCQDEN 205 (351)
T ss_pred ----cccchhhccCCce---------eeecccceehhhHHHhhhhh-hHHhHHHHHHHhCcccccchHHHHHHHHhcccc
Confidence 2334444331110 1111 12223 24566632 2233333 46554 345556666777899999
Q ss_pred hHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHHhhHhhc---CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 039934 204 LHCDFACLLYSL---LRNKLSEERVKGIVKEAVEIEREFVCDAL---PCALVGMNGALMSQYIEFVADRLLGALGCGKVY 277 (329)
Q Consensus 204 ~H~~~~~~l~~~---l~~~~~~~~i~~~~~eav~~E~~~~~~~~---~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y 277 (329)
+|+.+...+++. |.+.+-..--...+.-+|=.- =|+.+.- -++.+||++.+....|--..|....++ +|-..
T Consensus 206 RHGdfF~almraqP~ll~g~~~kLW~RFFLlsVfaT-myl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rv-FP~~L 283 (351)
T CHL00185 206 RHGDFFAALLKSQPHLLNGWKARLWCRFFLLSVFAT-MYLNDLQRSDFYAAIGLDARQFDMHVIRKTNESAARL-FPVVL 283 (351)
T ss_pred hhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHH-heehhcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 999999987642 221111111111222222100 0111111 047889999999999999999988775 34444
Q ss_pred CCCCCc
Q 039934 278 GVTNPF 283 (329)
Q Consensus 278 ~~~nP~ 283 (329)
.+.||-
T Consensus 284 dvd~P~ 289 (351)
T CHL00185 284 DVDNPK 289 (351)
T ss_pred cCCCHH
Confidence 567885
No 28
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=95.21 E-value=1.8 Score=37.25 Aligned_cols=199 Identities=12% Similarity=0.102 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH--HHHHHHHH
Q 039934 57 TADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDE--KSRLFRAF 134 (329)
Q Consensus 57 ~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e--~~~~~~~~ 134 (329)
|+.=|+++.++=+-..-++....+|.. .+...+|. -+-=+..-+-||++|.+.|.--=+++...|+- -.+.|...
T Consensus 4 s~~YkdAYSRINaIVIEGEqeA~~Nyi-~la~llP~--~~deL~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L 80 (219)
T PF11266_consen 4 SETYKDAYSRINAIVIEGEQEAHDNYI-SLAELLPD--QKDELIRLAKMENRHKKGFQACGRNLGVTPDMPFAKEFFSPL 80 (219)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-GG--GHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred hHHHHHHHHHhheeeeechHHHHHhHH-HHHHHCcc--cHHHHHHHHHHHHHHHhHHHHhccCCcCCCCcHHHHHHHHHH
Confidence 566788999998888888877767765 35555444 33346777789999999998888888654531 11222222
Q ss_pred hhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Q 039934 135 ETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 213 (329)
Q Consensus 135 ~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~ 213 (329)
..+= .++ ... ......++.-+ ++|.. .-+.|-+. +.-- =|--.++-.-+.+||..|..||..-+
T Consensus 81 h~nF---q~A------~~~-gk~~tCLlIQaliIE~F-AIaAYniY--IpVA--D~FARkITegVVkDEy~HLNfGe~WL 145 (219)
T PF11266_consen 81 HGNF---QRA------AAE-GKVVTCLLIQALIIECF-AIAAYNIY--IPVA--DPFARKITEGVVKDEYTHLNFGEEWL 145 (219)
T ss_dssp HHHH---HHH------HHT-T-HHHHHHHHHTHHHHH-HHHHHHHH--GGGS---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHH------HHc-CCeeehHHHHHHHHHHH-HHHHhhhc--eecc--cHHHHHHHHHHHhhHHHhcchHHHHH
Confidence 1110 111 011 11222222222 45542 11222221 1100 02233477889999999999998765
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHhhHhhc-CCCCCCCCHHHH-HHHHHHHHHHHHHHcCCCC
Q 039934 214 SLLRNKLSEERVKGIVKEAVEIEREFVCDAL-PCALVGMNGALM-SQYIEFVADRLLGALGCGK 275 (329)
Q Consensus 214 ~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~-~~~~~Gl~~~~~-~~yi~y~an~~l~~lG~~~ 275 (329)
+.-.. .+.+++.+.-++...+-.+.++..- +..++|++++.+ ..|+- .-...|.++|+..
T Consensus 146 k~~f~-~~k~el~~An~~nLPlv~~MLnqV~~Da~vL~Meke~lvedFmi-~Y~eAL~~IGf~t 207 (219)
T PF11266_consen 146 KANFE-QSKAELEEANRENLPLVWKMLNQVAADARVLGMEKEALVEDFMI-AYGEALSNIGFTT 207 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHH-HHHHHHHHHT--H
T ss_pred HHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHcCCcH
Confidence 43321 1233343333333333333333222 236778886554 55544 4456788888863
No 29
>PRK14983 aldehyde decarbonylase; Provisional
Probab=95.17 E-value=0.86 Score=39.56 Aligned_cols=199 Identities=14% Similarity=0.129 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH--HHHHHHHH
Q 039934 57 TADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDE--KSRLFRAF 134 (329)
Q Consensus 57 ~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e--~~~~~~~~ 134 (329)
|+.=|+++.++=+-..-++..-.+|... +...+| +-+-=+..-+-||++|.+.|.--=+++...|+- -.+.|...
T Consensus 14 s~~YkdAYSRINaIVIEGEqeA~dNyi~-la~llP--~~~dEL~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L 90 (231)
T PRK14983 14 SETYKDAYSRINAIVIEGEQEAHDNYIS-LATLLP--EHAEELTRLAKMEMRHKKGFTACGRNLGVTPDMPFAKEFFSPL 90 (231)
T ss_pred cHHHHHHHHHhceeeEeccHHHHHhHHH-HHHHCc--ccHHHHHHHHHHHHHHHhHHHHHcccCcCCCCcHHHHHHHHHH
Confidence 4566788888876666666666666542 555543 344446777889999999987776766543421 12233322
Q ss_pred hhcHHHHHHHHHHHHhhcCChhHHHHHHH-HHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Q 039934 135 ETVPCVAKKADWALNWIDGSETFAERLIA-FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 213 (329)
Q Consensus 135 ~~~~~l~~k~~~~~~~~~~~~~~~~~lv~-~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~ 213 (329)
..+= .++ .... ...-.++. ..++|... -+.|.+. +.-- =|--.++-.-+.+||..|..||..-+
T Consensus 91 h~nF---q~A------~~eg-kv~TCLlIQaLiIE~FA-IaAYniY--IpVA--D~FARkITegVVkDEY~HLN~Ge~WL 155 (231)
T PRK14983 91 HGNF---QKA------AAEG-KVVTCLLIQALIIEAFA-IAAYNIY--IPVA--DPFARKITEGVVKDEYLHLNFGEEWL 155 (231)
T ss_pred HHHH---HHH------HhcC-CeeehHHHHHHHHHHHH-HHHHhhc--cccc--cHHHHHHHHhHHhhHHHhcchHHHHH
Confidence 2111 111 1100 11111121 22455421 1222211 1100 02233467889999999999998765
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHhhHhhc-CCCCCCCCHHHH-HHHHHHHHHHHHHHcCCCC
Q 039934 214 SLLRNKLSEERVKGIVKEAVEIEREFVCDAL-PCALVGMNGALM-SQYIEFVADRLLGALGCGK 275 (329)
Q Consensus 214 ~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~-~~~~~Gl~~~~~-~~yi~y~an~~l~~lG~~~ 275 (329)
+.-.. .+.+++.+.-++...+-.+.++..- +..++|++++.+ ..|+- .-...|.++|+..
T Consensus 156 k~~f~-~~K~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi-~Y~eAL~~IGf~t 217 (231)
T PRK14983 156 KANFE-TSKDELEEANKENLPLVWKMLNQVADDAAVLGMEKEALVEDFMI-AYGEALSNIGFST 217 (231)
T ss_pred HHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHcCCcH
Confidence 43321 1223333222222222222222211 236777876544 55544 3456788888864
No 30
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=94.51 E-value=0.056 Score=50.54 Aligned_cols=45 Identities=24% Similarity=0.152 Sum_probs=38.7
Q ss_pred HhHHHHHHHHHhcCC--CcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 173 SGSFCAIFWLKKRGL--MPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 173 ~s~F~~~~~l~~~~~--l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
+|||...--|+++.+ =|-++++..+++|||++|.+|.-..++...
T Consensus 96 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~ 142 (355)
T PRK13654 96 FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFG 142 (355)
T ss_pred hhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcC
Confidence 688888878888876 899999999999999999999887766553
No 31
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=94.48 E-value=0.063 Score=49.79 Aligned_cols=44 Identities=20% Similarity=0.120 Sum_probs=37.1
Q ss_pred HhHHHHHHHHHhcCCCcc--hHHHHHHHHhhhhhHHHHHHHHHHHH
Q 039934 173 SGSFCAIFWLKKRGLMPG--LTFSNELISRDEGLHCDFACLLYSLL 216 (329)
Q Consensus 173 ~s~F~~~~~l~~~~~l~g--~~~~i~~I~rDE~~H~~~~~~l~~~l 216 (329)
+|||...--++++.+=+. ++++..+++|||++|.+|.-..+...
T Consensus 86 FSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df 131 (337)
T TIGR02029 86 FSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDF 131 (337)
T ss_pred hhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 688888878888875555 99999999999999999988776655
No 32
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=94.41 E-value=1.8 Score=40.11 Aligned_cols=208 Identities=14% Similarity=0.125 Sum_probs=117.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Q 039934 52 QWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQV--SEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSR 129 (329)
Q Consensus 52 ~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~--~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~ 129 (329)
+|..++++.|..+..-|-.-..++ .-|-.+-..+...+.+ |.++-++...+-+|++|+-+-+.-+..++
T Consensus 52 ~~~~~~~e~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~-------- 122 (323)
T cd01047 52 AADKIDPELRQIFLEFLERSCTSE-FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFN-------- 122 (323)
T ss_pred hhhhCCHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcC--------
Confidence 366688888887766553322222 1122233456666655 99999999999999999998777776653
Q ss_pred HHHHHhhcHHHHHHHHHHHHhhcCChhHHH-HHHHH--HHHHHHHhHhHHHHHH-HHHhc--CCCcchHHHHHHHHhhhh
Q 039934 130 LFRAFETVPCVAKKADWALNWIDGSETFAE-RLIAF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 203 (329)
Q Consensus 130 ~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~-~lv~~--~~lEgi~f~s~F~~~~-~l~~~--~~l~g~~~~i~~I~rDE~ 203 (329)
.-.+.+.|.+.-.+ ++.+ +.|-| ++-|-|-+ .=|..++ .|.+. ..+--+=+-.+.=+.||.
T Consensus 123 ---l~lDLgfLtk~r~Y---------TfF~PkfI~YatYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEn 189 (323)
T cd01047 123 ---LALDLGFLTKTRKY---------TFFKPKFIFYATYLSEKIGY-WRYITIYRHLERNPENQFHPIFKYFENWCQDEN 189 (323)
T ss_pred ---cccchhhhccCCce---------eeeCccceeehhHhhhhhhh-HHHHHHHHHHHhCcccccchHHHHHHHHhcccc
Confidence 22334444331111 1111 11222 24566632 2333333 46554 345556666777899999
Q ss_pred hHHHHHHHHHHHH---HccCCHHHHHHHHHHHHHHHHHhhHhhc---CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 039934 204 LHCDFACLLYSLL---RNKLSEERVKGIVKEAVEIEREFVCDAL---PCALVGMNGALMSQYIEFVADRLLGALGCGKVY 277 (329)
Q Consensus 204 ~H~~~~~~l~~~l---~~~~~~~~i~~~~~eav~~E~~~~~~~~---~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y 277 (329)
+|+.+...+++.- .+..-..--...+.-+|=.-. |+.+.- -++.+||++.+....|-...|....++ +|-..
T Consensus 190 RHGd~F~~lmrsqP~ll~~~~~kLW~RFFLlsVfaTm-yl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rv-FP~~L 267 (323)
T cd01047 190 RHGDFFAALLRAQPHLLNDGKNKLWIRFFLLSVYATM-YLNDHQRPDFYEALGLDTTEFDMHVIRETNETAARV-FPAVL 267 (323)
T ss_pred hhhHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhh-eeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 9999999876422 211111111122222221000 111110 047889999999999999999988775 44444
Q ss_pred CCCCCc
Q 039934 278 GVTNPF 283 (329)
Q Consensus 278 ~~~nP~ 283 (329)
.+.||-
T Consensus 268 dvd~P~ 273 (323)
T cd01047 268 DVDNPE 273 (323)
T ss_pred cCCChH
Confidence 568885
No 33
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=94.37 E-value=4 Score=37.28 Aligned_cols=216 Identities=12% Similarity=0.083 Sum_probs=129.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHH
Q 039934 55 SLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY-IKNSDEKSRLFRA 133 (329)
Q Consensus 55 ~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~-~~d~~e~~~~~~~ 133 (329)
.+|+.-|+++.+.++.++-.+-+.+.-.. .-..+.|.-|.+..++.-+-+|.-|..-+=++..++ ++..+ +.+..
T Consensus 11 ~~p~~~~~tLi~~i~~~ad~elv~~~r~~-eW~~~AP~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~---d~la~ 86 (265)
T COG3396 11 WMPEAYRRTLIRLISQLADSELVLALREG-EWLGHAPTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGRE---DDLAY 86 (265)
T ss_pred hCCHHHHHHHHHHHHHhcchHHHHhccCC-cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH---HHHHH
Confidence 58889999999999988887766654443 245678899999999999999999999999999999 54432 33432
Q ss_pred HhhcHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHhHhHHHHHHHH-HhcCCCcchHHHHHHHHhhhhhHHHHHHH
Q 039934 134 FETVPCVAKKADWALNWIDGS-ETFAERLIAFACVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCDFACL 211 (329)
Q Consensus 134 ~~~~~~l~~k~~~~~~~~~~~-~~~~~~lv~~~~lEgi~f~s~F~~~~~l-~~~~~l~g~~~~i~~I~rDE~~H~~~~~~ 211 (329)
.+. +. .+.....+-+ -+++-.++ +. +|+-+++++..- -.+.-.+-++.+...|++.|.-|..++..
T Consensus 87 ~r~-g~-----~k~n~~~n~P~~~Wadt~~-~~-----fLvD~~~~~~l~~l~~ssy~PlA~~a~k~~kEe~fHl~~~~~ 154 (265)
T COG3396 87 LRD-GR-----HKRNSLFNLPTGDWADTIV-RG-----FLVDGAAIYQLEALADSSYGPLARAAQKICKEEEFHLRHGKT 154 (265)
T ss_pred Hhh-hH-----HHHHHHHcCCCccHHHHHH-HH-----HHHhHHHHHHHHHHHhccchHHHHHHHHHHHhHHHHHHHHHH
Confidence 222 11 1111111111 12333322 22 233444444321 13445678999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHhhHhhc------------CCCCCCCC-HHHHHHHHHHHHHHHHHHcCCCCC--
Q 039934 212 LYSLLRNKLSEERVKGIVKEAVEIEREFVCDAL------------PCALVGMN-GALMSQYIEFVADRLLGALGCGKV-- 276 (329)
Q Consensus 212 l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~------------~~~~~Gl~-~~~~~~yi~y~an~~l~~lG~~~~-- 276 (329)
.+..+.++-. +.++++.+|++-=--.+...| ..+|--.+ .+.-.+|++ ..+..|..+|+.-+
T Consensus 155 ~l~~l~~gT~--~~~~~~Q~AlN~wwp~~lemf~~~~~~~~~~a~~~gI~~~~n~~Lrq~~i~-~~~~~l~~~gltvPd~ 231 (265)
T COG3396 155 WLKRLANGTE--ESRQMAQAALNRWWPRALEMFGPSASESELSAAKWGIKVDPNDELRQAWIK-EVNEELRELGLTVPDP 231 (265)
T ss_pred HHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHhCcccccchhHHHHcCCCCCCHHHHHHHHHH-HHHHHHHHhcCCCCcc
Confidence 9988875533 233333333321101111111 01233334 344455665 78888999996543
Q ss_pred ---CC------CCCCchhhhhh
Q 039934 277 ---YG------VTNPFDWMELI 289 (329)
Q Consensus 277 ---y~------~~nP~~w~~~~ 289 (329)
|+ +..+.+|.+.+
T Consensus 232 ~l~~n~~~g~h~~~~~~~l~~~ 253 (265)
T COG3396 232 NLHYNGKRGHHTEHLGDWLAEM 253 (265)
T ss_pred ccccccccCCcccchhhHHHHH
Confidence 22 23466777654
No 34
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=94.35 E-value=2.5 Score=39.50 Aligned_cols=208 Identities=14% Similarity=0.133 Sum_probs=117.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Q 039934 52 QWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEV--QVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSR 129 (329)
Q Consensus 52 ~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~ 129 (329)
+|..|+++.|..+..-|-.-..++ .-|-.+-..+...+ ++|.+.-++...+-+|++|+-+-+.-+..++.
T Consensus 62 ~~~~l~~e~r~~FidFLerScTaE-FSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df~l------- 133 (337)
T TIGR02029 62 SWEHIDGELRQAFIEFLERSCTSE-FSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDFGL------- 133 (337)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHcCc-------
Confidence 366799998887766553322222 11222333455566 67889999999999999999987777766532
Q ss_pred HHHHHhhcHHHHHHHHHHHHhhcCChhHHH-HHHHH--HHHHHHHhHhHHHHHH-HHHhc--CCCcchHHHHHHHHhhhh
Q 039934 130 LFRAFETVPCVAKKADWALNWIDGSETFAE-RLIAF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 203 (329)
Q Consensus 130 ~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~-~lv~~--~~lEgi~f~s~F~~~~-~l~~~--~~l~g~~~~i~~I~rDE~ 203 (329)
-.+...|.+.-.+ ++.. +.|-| ++-|-|-+ .=|..++ .|.+. ..+--+=+-.+.=+.||.
T Consensus 134 ----~lDLgfLtk~r~Y---------TfF~PkfI~YAtYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEn 199 (337)
T TIGR02029 134 ----ALDLGFLTKTRKY---------TFFRPKFIYYATYLSEKIGY-WRYITIYRHLEENPENQFYPIFKYFESWCQDEN 199 (337)
T ss_pred ----ccchhhhccCCce---------eeeccceeehhhHhHhhhhh-HHHHHHHHHHHhCcccccchHHHHHHHHhcccc
Confidence 2334444331110 1111 11222 24566632 2333343 46554 345556666778899999
Q ss_pred hHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHHhhHhhc---CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 039934 204 LHCDFACLLYSL---LRNKLSEERVKGIVKEAVEIEREFVCDAL---PCALVGMNGALMSQYIEFVADRLLGALGCGKVY 277 (329)
Q Consensus 204 ~H~~~~~~l~~~---l~~~~~~~~i~~~~~eav~~E~~~~~~~~---~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y 277 (329)
+|+.+...+++. |.+..-..--...+.-+|=.- =|+.+.- -++.+||++.+....|-...|....++ +|-..
T Consensus 200 RHGd~F~~lmrsqP~ll~g~~~kLW~RFFLLsVfaT-myl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rv-FP~~L 277 (337)
T TIGR02029 200 RHGDAFAALMRSQPQLLNNWKAKLWSRFFLLSVYST-MYLRDHQRPGFYEALGLDATDFDLQVFRNTNETSGRI-FPMTL 277 (337)
T ss_pred hhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHH-HhhhhcccHHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 999999987642 221111111111222222110 1111111 147889999999999999999988775 44444
Q ss_pred CCCCCc
Q 039934 278 GVTNPF 283 (329)
Q Consensus 278 ~~~nP~ 283 (329)
.+.||-
T Consensus 278 dvd~P~ 283 (337)
T TIGR02029 278 NTEHPR 283 (337)
T ss_pred cCCCHH
Confidence 568884
No 35
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=94.22 E-value=0.069 Score=49.25 Aligned_cols=45 Identities=24% Similarity=0.152 Sum_probs=37.8
Q ss_pred HhHHHHHHHHHhcCC--CcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 173 SGSFCAIFWLKKRGL--MPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 173 ~s~F~~~~~l~~~~~--l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
+|||...--++++.+ =|-++++..+++|||++|.+|.-..++...
T Consensus 76 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~ 122 (323)
T cd01047 76 FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFN 122 (323)
T ss_pred hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcC
Confidence 688888878888764 499999999999999999999887766553
No 36
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=94.04 E-value=0.078 Score=49.43 Aligned_cols=44 Identities=27% Similarity=0.157 Sum_probs=37.6
Q ss_pred HhHHHHHHHHHhcC--CCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 039934 173 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFACLLYSLL 216 (329)
Q Consensus 173 ~s~F~~~~~l~~~~--~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l 216 (329)
+|||...--++++. .=|-++++..+++|||++|.+|.-..+...
T Consensus 92 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 137 (351)
T CHL00185 92 FSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDF 137 (351)
T ss_pred hhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 68888887888876 459999999999999999999988776655
No 37
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=94.01 E-value=1.2 Score=42.67 Aligned_cols=114 Identities=17% Similarity=-0.065 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHH
Q 039934 95 ARAFYGFQIAIENIHSEMYSLLLETYI-KNSDEKSRLFRAFETVPCVAKKADWALNWIDG--SETFAERLIAFACVEGIF 171 (329)
Q Consensus 95 ~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~--~~~~~~~lv~~~~lEgi~ 171 (329)
...|.....++|++|...-..+|-.-+ .||.+. +. .+...+.+-++. ..+.+..++--++-|..-
T Consensus 157 W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~i-------E~-----t~q~li~~G~d~~~~~~py~~~vYtSFQErAT 224 (390)
T PLN00179 157 WARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQI-------EK-----TIQYLIGSGMDPKTENNPYLGFIYTSFQERAT 224 (390)
T ss_pred hhhhccccccccchHHHHHHHHHhhccCcCHHHH-------HH-----HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 556788888999999998766665332 244321 10 111222233332 223445544223455543
Q ss_pred hHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC
Q 039934 172 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS 221 (329)
Q Consensus 172 f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~ 221 (329)
+ .|..-+--++.+.-=|-++++...|+.||.+|-.|..+++..+.+-.|
T Consensus 225 ~-VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dP 273 (390)
T PLN00179 225 F-ISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDP 273 (390)
T ss_pred H-HHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCc
Confidence 2 222222234443224778999999999999999999999988876544
No 38
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=93.66 E-value=2.4 Score=34.58 Aligned_cols=106 Identities=12% Similarity=0.027 Sum_probs=68.7
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 039934 85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAF 164 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~ 164 (329)
..+..-.-+++..++..|+..|..|+.-+...+..+.+.|. .|.. -..+....++
T Consensus 25 ~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----------~~~~---------~~~~~~~~l~----- 79 (134)
T cd01041 25 EKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----------GPPI---------GIGDTLENLK----- 79 (134)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----------CCCC---------CcchHHHHHH-----
Confidence 45555567889999999999999999999988888866552 1100 0000000111
Q ss_pred HHHHHHH--hHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 039934 165 ACVEGIF--FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 215 (329)
Q Consensus 165 ~~lEgi~--f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~ 215 (329)
..+++-. ....+.-+...++...-..++..+..|..||..|......++..
T Consensus 80 ~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 80 AAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1122211 11334444455677778999999999999999999987766543
No 39
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=93.66 E-value=1.4 Score=41.27 Aligned_cols=208 Identities=14% Similarity=0.136 Sum_probs=116.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Q 039934 52 QWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQ--VSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSR 129 (329)
Q Consensus 52 ~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~--~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~ 129 (329)
+|..|+++.|..+..-|-.-..++ .-|-.+-..+...++ +|.++-+++..+-+|++|+-+-+..+..++.
T Consensus 68 ~~~~l~~~~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l------- 139 (357)
T PLN02508 68 AADKIQGPLRQIFIEFLERSCTAE-FSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNL------- 139 (357)
T ss_pred chhhCCHHHHHHHHHHHHhhhhhh-cccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCc-------
Confidence 466688888887765553322222 111123334556664 4999999999999999999987777776632
Q ss_pred HHHHHhhcHHHHHHHHHHHHhhcCChhHHH-HHHHH--HHHHHHHhHhHHHHHH-HHHhc--CCCcchHHHHHHHHhhhh
Q 039934 130 LFRAFETVPCVAKKADWALNWIDGSETFAE-RLIAF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 203 (329)
Q Consensus 130 ~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~-~lv~~--~~lEgi~f~s~F~~~~-~l~~~--~~l~g~~~~i~~I~rDE~ 203 (329)
-.+...|.+.-.+ ++.+ +.|-| ++-|-|-+ .=|..++ .|.+. ..+--+=+-.+.=+.||.
T Consensus 140 ----~lDLgfLtk~rkY---------TfF~PkfIfYAtYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIFk~Fe~WCqDEn 205 (357)
T PLN02508 140 ----ALDLGFLTKNRKY---------TFFKPKFIFYATYLSEKIGY-WRYITIYRHLQANPDYQLYPIFKYFENWCQDEN 205 (357)
T ss_pred ----cccchhhcccCce---------eeeCcceeehhhHhhhhhhh-hhHhHHHHHHHhCcccccchHHHHHHHHhcccc
Confidence 2334444331111 1111 11222 24566632 2333443 46554 345556666777899999
Q ss_pred hHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHHhhHhhc---CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 039934 204 LHCDFACLLYSL---LRNKLSEERVKGIVKEAVEIEREFVCDAL---PCALVGMNGALMSQYIEFVADRLLGALGCGKVY 277 (329)
Q Consensus 204 ~H~~~~~~l~~~---l~~~~~~~~i~~~~~eav~~E~~~~~~~~---~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y 277 (329)
+|+.+...+++. |.+..-..--...+.-+|=.- =|+.+.- -++.+||+..+....|--..|....++ +|-..
T Consensus 206 RHGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfaT-Myl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rv-FP~~L 283 (357)
T PLN02508 206 RHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYVT-MYLNDHQRTAFYEGIGLNTKQFNMHVIIETNRTTARI-FPAVL 283 (357)
T ss_pred hhHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHHH-heeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 999999987642 221110111111222222100 0111110 047889999999999999999988775 33344
Q ss_pred CCCCCc
Q 039934 278 GVTNPF 283 (329)
Q Consensus 278 ~~~nP~ 283 (329)
.+.||-
T Consensus 284 dvd~P~ 289 (357)
T PLN02508 284 DVENPE 289 (357)
T ss_pred cCCCHH
Confidence 567884
No 40
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=93.40 E-value=6.2 Score=36.11 Aligned_cols=105 Identities=17% Similarity=0.081 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHH---HHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHH-HHHHHHHhHh
Q 039934 99 YGFQIAIENIHSEMYSLLLETYIKNSDE---KSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAF-ACVEGIFFSG 174 (329)
Q Consensus 99 ~~~q~~~E~iH~~sYs~il~~~~~d~~e---~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~-~~lEgi~f~s 174 (329)
+...+.+|+.|-..+..-|+.++.+-.. -.-+++...+. ..++..++... .++|+--+=.
T Consensus 104 ~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gLw~~~~~t----------------~~dl~~R~A~vp~~~EArGLD~ 167 (253)
T PF04305_consen 104 WLRVADDEARHFRLLRERLEELGSDYGDLPAHDGLWEAAEQT----------------AHDLLARMALVPRVLEARGLDV 167 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHh----------------ccCHHHHHHHHHHHHHhhCCCC
Confidence 4477889999999999999999743211 11222222211 11233333333 2566654433
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccC
Q 039934 175 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKL 220 (329)
Q Consensus 175 ~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~ 220 (329)
+=.++-.|...|-. .++.+++.|.+||.-|+.+|..=++.+.+..
T Consensus 168 ~p~~~~k~~~~gD~-~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~ 212 (253)
T PF04305_consen 168 TPFIIEKFRSAGDE-ESAAILEIILRDEIGHVAIGNRWFRYLCEQR 212 (253)
T ss_pred CHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 33344445555544 7888999999999999999999998887643
No 41
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=93.23 E-value=0.084 Score=49.26 Aligned_cols=45 Identities=27% Similarity=0.165 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHhcC--CCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 173 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 173 ~s~F~~~~~l~~~~--~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
+|||...--|+++. .=|-+++++.+++|||++|.+|.-..++...
T Consensus 92 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~ 138 (357)
T PLN02508 92 FSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFN 138 (357)
T ss_pred cccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcC
Confidence 68888887888876 4599999999999999999999887766553
No 42
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=90.81 E-value=7.4 Score=31.26 Aligned_cols=103 Identities=17% Similarity=0.048 Sum_probs=63.4
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHH-HHHHhhcCChhHHHHHH
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKAD-WALNWIDGSETFAERLI 162 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~-~~~~~~~~~~~~~~~lv 162 (329)
..++..+++|+.+-.+...+-+|..|.+.+..++...+.+|. + +.++.... ++.+.. +..++.++.
T Consensus 18 ~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~l~~~~--g~~~~l~~~ 84 (125)
T cd01044 18 RKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPPP-R----------PKLKIFFYKLLARIF--GPTFVLKLL 84 (125)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-C----------ccHHHHHHHHHHHHH--hHHHHHHHH
Confidence 457778899999999999999999999999999998865542 0 11111110 111111 011111111
Q ss_pred HHHHHH--HHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Q 039934 163 AFACVE--GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 213 (329)
Q Consensus 163 ~~~~lE--gi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~ 213 (329)
.-.| ++.||...+-. ...+..|..||..|......++
T Consensus 85 --~~~E~~ai~~Y~~~~~~------------~~~~~~Ii~dE~~H~~~L~~~~ 123 (125)
T cd01044 85 --ERGEERAIEKYDRLLEE------------RPELKEIIADELEHEEVLIALL 123 (125)
T ss_pred --HHhHHhhHhhHHhhhhh------------hHHHHHHHHHHHHHHHHHHHhh
Confidence 1233 66666555433 4477889999999998665543
No 43
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=89.83 E-value=15 Score=33.27 Aligned_cols=175 Identities=11% Similarity=0.005 Sum_probs=106.3
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 039934 86 FMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFA 165 (329)
Q Consensus 86 ~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~ 165 (329)
-....|.-|.+..++..+-+|.=|++.+-.+...+..+.+ +.+. +...+.- -|+-.+...- ..+|+..++..
T Consensus 15 W~~~AP~LEediAlanialD~lGhAr~~y~~a~el~g~~e---d~La-~~R~~~~-frn~~l~e~P--~gdwa~tv~r~- 86 (237)
T TIGR02158 15 WCGHAPELEEDIALANIALDLLGHARMFLSLAGQLGGGDE---DTLA-FFRDEAE-FRNLRLTELP--NGDFALTIARQ- 86 (237)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH---HHHH-HhcChHH-hhhhHHHhCC--CCCHHHHHHHH-
Confidence 4567788899999999999999999999999999954321 2222 1122211 1111122111 23465554432
Q ss_pred HHHHHHhHhHHHHHHHH-HhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhHhhc
Q 039934 166 CVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDAL 244 (329)
Q Consensus 166 ~lEgi~f~s~F~~~~~l-~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~ 244 (329)
+||..+..+.+- -.+.--+-++.+..+|.+.|.-|...+...+..|... .++-++.+.+|++.=-.++...|
T Consensus 87 -----~l~d~~~~~~l~~L~~ss~~pla~ia~K~~kEe~yH~~h~~~w~~rL~~g--t~es~~r~Q~Ald~~wp~~~elF 159 (237)
T TIGR02158 87 -----FLYDAYKVLLLEALTQSRDVPLAAIAAKALKEARYHLQHAKTWLERLGLG--TEESHRRLQEALNELWPYTAELF 159 (237)
T ss_pred -----HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555554421 1345568899999999999999999999998888744 34555556666655445544444
Q ss_pred CC---------CCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q 039934 245 PC---------ALVGMNGALMSQYIEFVADRLLGALGCGK 275 (329)
Q Consensus 245 ~~---------~~~Gl~~~~~~~yi~y~an~~l~~lG~~~ 275 (329)
+. .-+..+.+.+.+--.-.....|..+|++-
T Consensus 160 ~~~~~~~~l~~~Gi~~~~~~Lr~~w~~~v~~~l~~agL~~ 199 (237)
T TIGR02158 160 EAGPIDEELAEAGIAVDPATLQAAWEKEVNAVLNEATLTL 199 (237)
T ss_pred CCCchHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 21 11122445555444445666777888764
No 44
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=89.51 E-value=13 Score=32.07 Aligned_cols=125 Identities=16% Similarity=0.079 Sum_probs=74.6
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHh--hcHHHHHHHHHHHHhhcCChhHHHHH
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFE--TVPCVAKKADWALNWIDGSETFAERL 161 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~--~~~~l~~k~~~~~~~~~~~~~~~~~l 161 (329)
..++..++++++|-.+...+.+|..|...++.++..+...+..-.+...+.. ..+.++. . .......++.+++
T Consensus 44 ~~lae~~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~I 118 (176)
T COG1633 44 EELAERIEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQP----G-KEMEKSVSYLEAI 118 (176)
T ss_pred HHHHHhcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhccccCc----c-cccccchhHHHHH
Confidence 3577899999999999999999999999999999999654411001111111 0111111 0 0233333444443
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 162 IAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 162 v~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
-+. +++-.....|...... ...=++...+++.++.||.-|.......++.+.
T Consensus 119 ~~a--~~~E~~t~~~Y~~~~~--~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~~ 170 (176)
T COG1633 119 EAA--MEAEKDTIEFYEELLD--ELVNEEAKKLFKTIADDEKGHASGLLSLYNRLT 170 (176)
T ss_pred HHH--HHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332 2222222222222221 222367888999999999999999888877654
No 45
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=83.20 E-value=7.3 Score=32.41 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=47.7
Q ss_pred HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC-------------------HHHHHHHHHHHHHHHHHhhH
Q 039934 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS-------------------EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 181 ~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~-------------------~~~i~~~~~eav~~E~~~~~ 241 (329)
++..++.-+.+++.+..++++|..|......++..+...+. ...+.++++.++..|.+-+.
T Consensus 39 ~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~ 118 (154)
T cd07908 39 HLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDKFTYWTGKYVNYGESIKEMLKLDIASEKAAIA 118 (154)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccccCCcCCccccCCccCHHHHHHHHHHHHHHHHH
Confidence 34455677999999999999999999999999887753322 12456788999999988664
Q ss_pred h
Q 039934 242 D 242 (329)
Q Consensus 242 ~ 242 (329)
.
T Consensus 119 ~ 119 (154)
T cd07908 119 K 119 (154)
T ss_pred H
Confidence 3
No 46
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=82.42 E-value=29 Score=29.26 Aligned_cols=105 Identities=17% Similarity=0.121 Sum_probs=65.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 039934 91 QVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGI 170 (329)
Q Consensus 91 ~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi 170 (329)
..++.+..+.-.+.+|--|.+..+..+..++.+|.. ..| +- .++....+...-+......|.-
T Consensus 51 ~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g----~pw--~~-----------~yv~~~~d~~~~L~~ni~aE~~ 113 (156)
T cd01051 51 EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQG----VPW--TA-----------AYIQSSGNLVADLRSNIAAESR 113 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CcC--CC-----------cccCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999988755531 222 11 1121111222222222223322
Q ss_pred HhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 039934 171 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 216 (329)
Q Consensus 171 ~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l 216 (329)
. -..|.-....... |++..++.+|..||..|..-...++..+
T Consensus 114 A-i~~Y~~l~~~~~D---p~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 114 A-RLTYERLYEMTDD---PGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred H-HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1122222223333 9999999999999999999888776643
No 47
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=82.20 E-value=23 Score=27.95 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=33.9
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI 121 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~ 121 (329)
..++..+++++++.++...+.+|..|.+.+..++..+.
T Consensus 18 ~~~a~~~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 18 LELAEKAKDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHHhHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888999999999999999999999999999874
No 48
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=81.58 E-value=8.6 Score=30.50 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=61.7
Q ss_pred HHHhhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCC-hhHHHHH
Q 039934 85 RFMKEVQV--SEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGS-ETFAERL 161 (329)
Q Consensus 85 ~~~~~~~~--~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~-~~~~~~l 161 (329)
.++..+++ |+++.++..-+.+|..|...+..+++........ .+......+... ...... ..-....
T Consensus 19 ~~a~~~~~~~p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 88 (137)
T PF02915_consen 19 ELAEKAKDEGPELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEP---PFLEEKVEYSFF-------PKLEEETDENLEEA 88 (137)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHT---HCHCCCCCHCCC-------CTCCSSHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc---chhhhhhhhhhc-------chhhhhhhHHHHHH
Confidence 35555555 8899999999999999999999999987432210 000000000000 000000 0001121
Q ss_pred HHHH-H--HHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHH
Q 039934 162 IAFA-C--VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 212 (329)
Q Consensus 162 v~~~-~--lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l 212 (329)
+... . .+++.+|.- ++..---|...+.+..|++||..|......+
T Consensus 89 l~~a~~~E~~~~~~Y~~------~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 89 LEMAIKEEKDAYEFYAE------LARKAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHTHHHHHHH------HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2221 1 223333322 2333334788899999999999999877665
No 49
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=79.80 E-value=33 Score=28.36 Aligned_cols=112 Identities=14% Similarity=0.071 Sum_probs=63.9
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIA 163 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~ 163 (329)
..++....+++.+..+...+.+|-.|++....++..++++|.- ...... .. ..|.........+... ++-
T Consensus 38 ~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~----~~~~~~--~~---~~~~~~~~~~~~~~~~-~L~ 107 (154)
T cd07908 38 QHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRY----RSSSSD--KF---TYWTGKYVNYGESIKE-MLK 107 (154)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc----hhhccc--cC---CcCCccccCCccCHHH-HHH
Confidence 3444455789999999999999999999999999999777741 110000 00 0011111111111111 222
Q ss_pred HH-HH--HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHH
Q 039934 164 FA-CV--EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 211 (329)
Q Consensus 164 ~~-~l--Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~ 211 (329)
+. -. .++-+|..-+- .-.=+.+..++..|+.||..|......
T Consensus 108 ~~~~~E~~ai~~Y~~~~~------~~~d~~~r~ll~~I~~eE~~H~~~L~~ 152 (154)
T cd07908 108 LDIASEKAAIAKYKRQAE------TIKDPYIRALLNRIILDEKLHIKILEE 152 (154)
T ss_pred HHHHHHHHHHHHHHHHHH------HcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 22 24444443322 122377888999999999999875543
No 50
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=75.24 E-value=66 Score=29.35 Aligned_cols=135 Identities=16% Similarity=0.095 Sum_probs=83.0
Q ss_pred HHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHhhcHHHHHHHHHH
Q 039934 71 FAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI---KNSDEKSRLFRAFETVPCVAKKADWA 147 (329)
Q Consensus 71 ~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~---~d~~e~~~~~~~~~~~~~l~~k~~~~ 147 (329)
|-.+|....+.. ....+.+++|+.+.=...++.+|+.|++.=..+++.+. .+.. +.+.+.....
T Consensus 36 fP~GE~ffi~sv-r~~~~~i~D~~L~~~i~~FIgQEA~H~r~H~~~n~~l~~~G~~~~------------~~~~~~~~~~ 102 (253)
T PF10118_consen 36 FPEGERFFIRSV-RRARPQIKDPELREEIKGFIGQEAMHSREHRKFNEALEAQGYDVR------------PFLEKMEKLF 102 (253)
T ss_pred hhhhHHHHHHHH-HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc------------HHHHHHHHHH
Confidence 455666665554 35778889999988888888999999998777777662 1211 1111111111
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHhHhHHHHHH--HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHc
Q 039934 148 LNWIDGSETFAERLIAFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRN 218 (329)
Q Consensus 148 ~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~--~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~ 218 (329)
.+.+....+...+|...+++|..-..-|=..+- .+-..|.=|.+..+..|=+--|.=|...+--+++.+..
T Consensus 103 ~~~l~~~~~~~~~La~taalEH~TA~la~~~L~~~~~~~~~adp~~~~Lw~WHa~EE~EHksVAfDvy~~~~g 175 (253)
T PF10118_consen 103 LKFLEKRLSLKFQLAYTAALEHFTAVLAEWLLNNPELLFAGADPEMRDLWRWHAAEEVEHKSVAFDVYQAVGG 175 (253)
T ss_pred HHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHhcChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222322123334444445788875433322222 11224555789999999999999999988888887764
No 51
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=65.81 E-value=47 Score=31.59 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=32.6
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039934 85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI 121 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~ 121 (329)
+++....+|-....++..+.+|++|..+|++++..++
T Consensus 176 ~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l 212 (330)
T PF03405_consen 176 RLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYL 212 (330)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4555558999999999999999999999999999885
No 52
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=65.54 E-value=1.4e+02 Score=29.13 Aligned_cols=209 Identities=12% Similarity=0.109 Sum_probs=108.7
Q ss_pred cCccccH--HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039934 44 VDLSQDI--RQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI 121 (329)
Q Consensus 44 id~~~D~--~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~ 121 (329)
|.+.+.+ +-|..+|.+-|..+.+++....-.+-.-.+.. ..+...+++---.-.+.....+|.+|.-+-.++|...+
T Consensus 86 I~fG~hkGe~awqevPgE~r~~L~riIv~QgDtEpASVEQq-r~lg~taPSlyD~rnlfqvnvEEgRHlWaMvyLL~k~F 164 (471)
T TIGR03225 86 IPFGEHKGEPAWQEVPGEYRSMLRRLIVIQGDTEPASVEQQ-RHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHKYF 164 (471)
T ss_pred eccccccccchHhhCCHHHHHHHHHHHhhccCCCchhHHHH-HHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 56999999999999999865422221111111 12333444444444455556788999999999995444
Q ss_pred -CCcHH-HHHHHHHH---hhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHH
Q 039934 122 -KNSDE-KSRLFRAF---ETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSN 195 (329)
Q Consensus 122 -~d~~e-~~~~~~~~---~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i 195 (329)
.|..+ -+++...- .++|. ++...+.+.+-++..++|. ++-.. |-.-+.++++++- --++...
T Consensus 165 G~dGreeAe~LL~rrsGd~d~PR-------iL~AFN~~t~dWlsffmFT~ftDRd----Gk~QL~alaeS~F-dPLaRt~ 232 (471)
T TIGR03225 165 GRDGREEAEALLRRRSGDADNPR-------ILGAFNEKTPDWLSFFMFTYFTDRD----GKMQLAALAESGF-DPLSRTC 232 (471)
T ss_pred CCccHHHHHHHHHhhcCCCCCcc-------hhhhccCCCccHHHHhHhheeeccc----chhhHHHHHhcCC-chHhhhh
Confidence 44322 11222211 22232 2222222222234545553 33333 2223345565553 4467777
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q 039934 196 ELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGK 275 (329)
Q Consensus 196 ~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~ 275 (329)
+.+...|..|.-+|-.=+..+.++-+ +++.++- .+.- ..+ ...-+|+...+..|+-+---+.|.-+|-+.
T Consensus 233 rfMltEEahHmfvGetGv~rviqrtc-----e~m~~~~-~~D~--~~i--r~~G~IdLptiQk~lN~wy~~~lDlFG~e~ 302 (471)
T TIGR03225 233 RFMLTEEAHHMFVGESGVGRVIERTC-----QVMKENG-TDDP--YRI--RALGVIDLPTIQKYLNFHYSVTSDLFGAEV 302 (471)
T ss_pred HHHhhhhHhHhhhhhHHHHHHHHHHH-----HHHHhcC-CCch--hhh--hhccCcchHHHHHHHHhhccHHHHhhcchh
Confidence 99999999999999755544432211 1111100 0000 001 122334456688888877777777777664
No 53
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=64.62 E-value=79 Score=25.99 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=41.5
Q ss_pred CCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccC--------C--HHHHHHHHHHHHHHHHHhhH
Q 039934 186 GLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKL--------S--EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 186 ~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~--------~--~~~i~~~~~eav~~E~~~~~ 241 (329)
.-+||++..++..+.+|..|..-...-+..+-..+ + ...+.+++..+++.|+..+.
T Consensus 32 ~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~~~~~~~~l~~al~~E~~~~~ 97 (156)
T cd01055 32 KGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSEFESLLEVFEAALEHEQKVTE 97 (156)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999997665554432111 1 13577899999999998553
No 54
>PF13668 Ferritin_2: Ferritin-like domain
Probab=64.05 E-value=75 Score=25.55 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=59.3
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 039934 89 EVQVSEARAFYGFQIAIENIHSEMYSLLLE--TYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFAC 166 (329)
Q Consensus 89 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~--~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~ 166 (329)
...+++++.++.....+|..|.+..+..+. .-+..|. |+. -..-+.++.+++. +-..
T Consensus 34 ~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~g~~~~~~~~-----~~~-------------~~~~~~~~~~~L~---~A~~ 92 (137)
T PF13668_consen 34 AALDPEVRDLFQEIADQEQGHVDFLQAALEGGRPVPPPA-----YDF-------------PFDPFTDDASFLR---LAYT 92 (137)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-----ccc-------------ccCCCCCHHHHHH---HHHH
Confidence 457788999999999999999999888885 1112221 222 0011122222221 1234
Q ss_pred HHHHH--hHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Q 039934 167 VEGIF--FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 213 (329)
Q Consensus 167 lEgi~--f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~ 213 (329)
+|.+. +|.|.+.. -. =|.+..+..-|...|..|......++
T Consensus 93 ~E~~~~~~Y~g~~~~---~~---~~~~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 93 LEDVGVSAYKGAAPQ---IE---DPELKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred HHHHHHHHHHHHHHH---cC---CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56542 33332221 12 36688899999999999999877664
No 55
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=63.62 E-value=4.3 Score=24.35 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=17.3
Q ss_pred HHHhhHhhcCCCCCCCCHHHHHHHHHHH
Q 039934 236 EREFVCDALPCALVGMNGALMSQYIEFV 263 (329)
Q Consensus 236 E~~~~~~~~~~~~~Gl~~~~~~~yi~y~ 263 (329)
..+|+.-+...--.|++.+++++|+++.
T Consensus 2 D~EW~~Li~eA~~~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 2 DEEWVELIKEAKESGLSKEEIREFLEFN 29 (30)
T ss_dssp -HHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3456654334456799999999999864
No 56
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=62.80 E-value=64 Score=25.77 Aligned_cols=55 Identities=22% Similarity=0.131 Sum_probs=40.4
Q ss_pred HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhh
Q 039934 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFV 240 (329)
Q Consensus 181 ~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~ 240 (329)
..++..-+|+++..+..++..|..|......++. ..+ ..+.+++..+++.|..-.
T Consensus 25 ~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~----~i~-~~~~~~le~a~~~E~~~~ 79 (123)
T cd01046 25 RVAQREGYPEVAEELKRIAMEEAEHAARFAELLG----KVS-EDTKENLEMMLEGEAGAN 79 (123)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----cCc-ccHHHHHHHHHHhHHHHH
Confidence 3456667899999999999999999986665432 222 567777888888777533
No 57
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=61.20 E-value=52 Score=26.90 Aligned_cols=58 Identities=17% Similarity=0.061 Sum_probs=45.2
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHhhH
Q 039934 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---------EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~i~~~~~eav~~E~~~~~ 241 (329)
...-+++++..+.-++.||..|..-....+..+-..|+ ...+.++++.+++.|...+.
T Consensus 32 ~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~~~~~~~l~~~l~~E~~~~~ 98 (153)
T cd00907 32 EDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIGEDVPEMLENDLALEYEAIA 98 (153)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 44568999999999999999999988888776653322 12477889999999987664
No 58
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=60.69 E-value=85 Score=25.04 Aligned_cols=97 Identities=13% Similarity=-0.051 Sum_probs=59.7
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 039934 85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAF 164 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~ 164 (329)
..+..-.-+++..++..|+..|..|++-|..++..+ |....+.+.....
T Consensus 25 ~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~i---~~~~~~~le~a~~---------------------------- 73 (123)
T cd01046 25 RVAQREGYPEVAEELKRIAMEEAEHAARFAELLGKV---SEDTKENLEMMLE---------------------------- 73 (123)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cccHHHHHHHHHH----------------------------
Confidence 344555668899999999999999999887765332 1000011111100
Q ss_pred HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 039934 165 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 215 (329)
Q Consensus 165 ~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~ 215 (329)
.|.-- ...+.-+...++.-....++..++.|.++|..|......++..
T Consensus 74 --~E~~~-~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~ 121 (123)
T cd01046 74 --GEAGA-NEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLER 121 (123)
T ss_pred --hHHHH-HHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11100 0112222334556667889999999999999999988776653
No 59
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=60.62 E-value=15 Score=29.03 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=47.5
Q ss_pred HHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHc--cCC------------------HHHHH
Q 039934 167 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRN--KLS------------------EERVK 226 (329)
Q Consensus 167 lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~--~~~------------------~~~i~ 226 (329)
.+|..||..++-.. ...| |.+..++..+++||..|..+...+++.+.. .++ .....
T Consensus 11 ~~~~~~Y~~~a~~~--~~~~--p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (137)
T PF02915_consen 11 LEAAKFYRELAEKA--KDEG--PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKLEEETDENLE 86 (137)
T ss_dssp HHHHHHHHHHHHHH--HHTT--HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHh--hhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchhhhhhhHHHH
Confidence 45666665555542 3334 889999999999999999999988876631 110 12356
Q ss_pred HHHHHHHHHHHHhh
Q 039934 227 GIVKEAVEIEREFV 240 (329)
Q Consensus 227 ~~~~eav~~E~~~~ 240 (329)
.++.-++..|..-+
T Consensus 87 ~~l~~a~~~E~~~~ 100 (137)
T PF02915_consen 87 EALEMAIKEEKDAY 100 (137)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777777533
No 60
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=59.11 E-value=53 Score=31.77 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=34.9
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHH
Q 039934 85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI-KNSDE 126 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e 126 (329)
+++....+|-.....+..+.+|++|..+|+++++.++ .||++
T Consensus 233 rlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd~ 275 (390)
T PLN00179 233 RLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDG 275 (390)
T ss_pred HHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCccH
Confidence 4666666888888999999999999999999999886 36653
No 61
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=58.17 E-value=67 Score=30.14 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=33.6
Q ss_pred HHHhhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcH
Q 039934 85 RFMKEV--QVSEARAFYGFQIAIENIHSEMYSLLLETYIK-NSD 125 (329)
Q Consensus 85 ~~~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~-d~~ 125 (329)
++...+ ..|-.+..++..+.+|++|..+|+.+++.++. +|+
T Consensus 168 nl~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~ 211 (297)
T cd01050 168 NTARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPD 211 (297)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 455555 88988999999999999999999999998752 454
No 62
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=57.91 E-value=1.2e+02 Score=25.90 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=61.8
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHH
Q 039934 83 AARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI---KNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAE 159 (329)
Q Consensus 83 ~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~---~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~ 159 (329)
...++..-.-|++.-.+-.++..|.+|+...-.++..+. .|..+ .|+. .+.. +.+
T Consensus 26 ~A~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~~~~~~~~e------------Nl~~-------aieG-E~~-- 83 (166)
T COG1592 26 FAKVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLLLVLGDTRE------------NLEE-------AIEG-ETY-- 83 (166)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHH------------HHHH-------HHcc-chH--
Confidence 355666777799999999999999999999888777542 11111 0000 0000 000
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHc
Q 039934 160 RLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRN 218 (329)
Q Consensus 160 ~lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~ 218 (329)
|--..|..|+-.. ...| ....+.-++.+.|||.+|......++..+.+
T Consensus 84 --------e~~emyp~~ae~A--~~~g-~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~~~ 131 (166)
T COG1592 84 --------EITEMYPVFAEVA--EEEG-FKEAARSFRAAAKAEKRHAEMFRGLLERLEE 131 (166)
T ss_pred --------HHHHhChHHHHHH--HHcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0000111111110 1112 5678888999999999999998888877753
No 63
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=54.88 E-value=89 Score=25.12 Aligned_cols=57 Identities=12% Similarity=-0.035 Sum_probs=41.7
Q ss_pred HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHH
Q 039934 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNK-----LSEERVKGIVKEAVEIERE 238 (329)
Q Consensus 182 l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~-----~~~~~i~~~~~eav~~E~~ 238 (329)
.+++--++|++..++.++.+|..|..-....+..+-.. .+...+.+.+..+.+.|..
T Consensus 26 ~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~~~~~~~~~~~~~l~~~~~~E~~ 87 (134)
T cd01041 26 KARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDTGPPIGIGDTLENLKAAIAGETY 87 (134)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCcchHHHHHHHHHHhhHH
Confidence 35555589999999999999999998776666555322 1234677888888888873
No 64
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=54.25 E-value=1.2e+02 Score=25.37 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=31.9
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039934 85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY 120 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~ 120 (329)
.++..+.+|.++..+.+.+.+|..|.+.|...++.+
T Consensus 120 ~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 120 RLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466677899999999999999999999999998865
No 65
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=52.74 E-value=57 Score=24.96 Aligned_cols=77 Identities=17% Similarity=0.121 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhHHHHHHHHHh
Q 039934 106 ENIHSEMYSLLLETYIKNSDEKSRLFRAFETV-PCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKK 184 (329)
Q Consensus 106 E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~-~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~ 184 (329)
+..|...|.++++.++.|+... .+ .... |....-.++..........+...+-++..+|++.....=...-.+.+
T Consensus 15 ~~~H~~Lf~~~L~~~Gi~~~~~--~~--~~~~~~~~~~~~n~~~~~~~~~~~~~~~lG~~~~~E~~~~~~~~~~~~~l~r 90 (106)
T PF14518_consen 15 ERSHPELFRRFLRALGIDDEPG--AY--RDPYPPETLALINLFLALCLHRSHYPEALGALLATESSVPQIYRRLIKGLRR 90 (106)
T ss_dssp GG-HHHHHHHHHHHTT-----T--T-------HHHHHHHHHHHHHH--H-SSTHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCCCccc--cc--cccCCHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 4479999999999998665311 01 1111 22222223333222222234455555567888754332222334554
Q ss_pred cC
Q 039934 185 RG 186 (329)
Q Consensus 185 ~~ 186 (329)
.|
T Consensus 91 ~g 92 (106)
T PF14518_consen 91 LG 92 (106)
T ss_dssp TT
T ss_pred cC
Confidence 44
No 66
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=51.33 E-value=1.1e+02 Score=27.96 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHhhcC-ChhHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHH
Q 039934 137 VPCVAKKADWALNWIDG-SETFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214 (329)
Q Consensus 137 ~~~l~~k~~~~~~~~~~-~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~ 214 (329)
.|.-+++.+|-. +++ ......+++++ ..+|++.--..-. .+...=.-|.........+-.|++|......+++
T Consensus 36 i~~~~D~~~~~~--Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~---~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~ 110 (281)
T PF00268_consen 36 IDMSKDIKDWKK--LSEEEREAYKRILAFFAQLDSLVSENLLP---NIMPEITSPEIRAFLTFQAFMEAIHAESYSYILD 110 (281)
T ss_dssp S-GGGHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhHHHHHh--CCHHHHHHHHHHHHHHHHHHhHHHhhHHH---HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444543 322 22355566665 5688875433212 2222222377888889999999999999999999
Q ss_pred HHHccCCHHHHHHHHH
Q 039934 215 LLRNKLSEERVKGIVK 230 (329)
Q Consensus 215 ~l~~~~~~~~i~~~~~ 230 (329)
.+. .++.++.+++.
T Consensus 111 ~l~--~~~~~~~~~~~ 124 (281)
T PF00268_consen 111 SLG--NDPKERDEIFD 124 (281)
T ss_dssp HHS--SSHHHHHHHHH
T ss_pred Hhc--CChHHHHHHHH
Confidence 997 44444444443
No 67
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=49.06 E-value=19 Score=24.22 Aligned_cols=22 Identities=36% Similarity=0.718 Sum_probs=18.4
Q ss_pred ccHHHHhcCCHHHHHHHHHHHH
Q 039934 48 QDIRQWESLTADEKHFITHVLA 69 (329)
Q Consensus 48 ~D~~~~~~L~~~er~~~~~~l~ 69 (329)
+.+.+|..|++.+|..+...|.
T Consensus 25 dEI~~W~~~s~~er~~i~~~l~ 46 (51)
T PF06945_consen 25 DEIRDWKSMSDDERRAILARLR 46 (51)
T ss_pred HHHHHHhhCCHHHHHHHHHHHH
Confidence 4678999999999998877664
No 68
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=46.42 E-value=63 Score=24.19 Aligned_cols=31 Identities=23% Similarity=0.082 Sum_probs=27.8
Q ss_pred CcchHHHHHHHHhhhhhHHHHHHHHHHHHHc
Q 039934 188 MPGLTFSNELISRDEGLHCDFACLLYSLLRN 218 (329)
Q Consensus 188 l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~ 218 (329)
.|++..++..++.||..|......++..+..
T Consensus 26 ~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~ 56 (130)
T cd00657 26 DPDLKDELLEIADEERRHADALAERLRELGG 56 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6899999999999999999999998877643
No 69
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=41.08 E-value=1.9e+02 Score=23.39 Aligned_cols=110 Identities=11% Similarity=-0.082 Sum_probs=69.6
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 039934 88 KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACV 167 (329)
Q Consensus 88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~l 167 (329)
....-+.+..++-.|+..|-.|++.....+..+++.|.- .. .+.+. .-.+.....+..+ -.
T Consensus 32 ~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~-----~~---~~~~~--------~~~~~~~~l~~~l---~~ 92 (153)
T cd00907 32 EDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNL-----QR---LGKLR--------IGEDVPEMLENDL---AL 92 (153)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-----Cc---CCCCC--------cCCCHHHHHHHHH---HH
Confidence 444567788889999999999999999999998876631 11 11000 0001111111111 12
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 168 Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
|. .....+--+.-++....=+.++..++.+.+||..|..+...++..+.
T Consensus 93 E~-~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~~ 141 (153)
T cd00907 93 EY-EAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLID 141 (153)
T ss_pred HH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22233333334455556789999999999999999999998887765
No 70
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=39.93 E-value=2e+02 Score=24.59 Aligned_cols=54 Identities=17% Similarity=0.256 Sum_probs=38.6
Q ss_pred cCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHcc-----------CC--HHHHHHHHHHHHHHHHHhhH
Q 039934 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNK-----------LS--EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 185 ~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~-----------~~--~~~i~~~~~eav~~E~~~~~ 241 (329)
..=|||++.-++.=+.+|..|.- .+++.+... |+ ..-..++++.++++|.....
T Consensus 33 ~~~l~G~A~f~~~qa~EE~~H~~---k~~~yl~~~g~~~~l~~I~~P~~~~~s~~e~f~~tlehEq~vt~ 99 (167)
T COG1528 33 SESLPGFAKFLRAQAQEELTHAM---KLFNYLNERGARPELKAIEAPPNKFSSLKELFEKTLEHEQKVTS 99 (167)
T ss_pred hcCChhHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCceecCcCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 55699999999999999999976 455555431 11 13467788888888876553
No 71
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=39.21 E-value=2.5e+02 Score=24.11 Aligned_cols=45 Identities=18% Similarity=0.047 Sum_probs=34.1
Q ss_pred HHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 167 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 167 lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
.|++.||...+-. ..+ +-+.+.+..|++||..|......++..+.
T Consensus 37 ~eA~~fY~~lae~---~~~---~~~rk~~~~la~eE~~H~~~f~~l~~~~~ 81 (176)
T COG1633 37 LEAIKFYEELAER---IED---EEIRKLFEDLADEEMRHLRKFEKLLEKLT 81 (176)
T ss_pred HHHHHHHHHHHHh---cCC---HhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788887655443 111 35889999999999999999998887664
No 72
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=38.45 E-value=88 Score=28.08 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=28.9
Q ss_pred HHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHcc
Q 039934 180 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNK 219 (329)
Q Consensus 180 ~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~ 219 (329)
|++ ..+.-.....+|+-|+++|.+|....+++++.+-..
T Consensus 20 ySi-~~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~ 58 (227)
T PF12902_consen 20 YSI-KPGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGS 58 (227)
T ss_dssp HHB-S-TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ccc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344 344445588999999999999999999999888543
No 73
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=37.43 E-value=1.3e+02 Score=28.38 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHhhc-CChhHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHH
Q 039934 137 VPCVAKKADWALNWID-GSETFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214 (329)
Q Consensus 137 ~~~l~~k~~~~~~~~~-~~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~ 214 (329)
.|.-+++.+|- .+. +...+.+.++++ ..++++.--.+-. .+...=--|-........+..|++|....+.++.
T Consensus 39 i~~s~D~~dw~--~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~---~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~ 113 (324)
T PRK09614 39 VPLSNDLKDWK--KLSDEEKNLYTRVFGGLTLLDTLQNNNGMP---NLMPDITTPEEEAVLANIAFMEAVHAKSYSYIFS 113 (324)
T ss_pred ccccchHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455552 232 233456666665 5778876433221 2222222277788889999999999999999999
Q ss_pred HHHc
Q 039934 215 LLRN 218 (329)
Q Consensus 215 ~l~~ 218 (329)
.+..
T Consensus 114 tl~~ 117 (324)
T PRK09614 114 TLCS 117 (324)
T ss_pred HcCC
Confidence 8753
No 74
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=37.07 E-value=3.3e+02 Score=24.86 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=42.4
Q ss_pred hHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHH
Q 039934 156 TFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVK 226 (329)
Q Consensus 156 ~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~ 226 (329)
...+.++++ +.+|++.--..-..+... ---|.........+-+|++|+.....++..+.....++++.
T Consensus 46 ~~~~~~la~~~~~d~~v~~~~~~~~~~~---~~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~~~e~~~~~ 114 (288)
T cd01049 46 HFIKRVLAFLAALDSIVGENLVELFSRH---VQIPEARAFYGFQAFMENIHSESYSYILDTLGKDEERDELF 114 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHH
Confidence 345555554 567777432221111111 12467777888999999999999999999887543333333
No 75
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=36.45 E-value=34 Score=24.29 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHH
Q 039934 30 MYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLA 69 (329)
Q Consensus 30 ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~ 69 (329)
+.|+....+|.+.. ...|..+|+++|..++..+-
T Consensus 39 ~LKn~I~~~W~~~~------~~~~~~~~~~~k~~Ik~~ll 72 (77)
T PF03810_consen 39 LLKNLIKKNWSPSK------QKGWSQLPEEEKEQIKSQLL 72 (77)
T ss_dssp HHHHHHHHSGGHHH------HHHHHGSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchhh------ccCCCCCCHHHHHHHHHHHH
Confidence 34556778899876 67789999999999988764
No 76
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=36.17 E-value=1.3e+02 Score=28.12 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=34.0
Q ss_pred hHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039934 80 ENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI 121 (329)
Q Consensus 80 ~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~ 121 (329)
+..-.+++....+|-+|-.+++-+..|.+|...|..-|+++-
T Consensus 154 R~~yerL~~mTdDpgvkd~L~FLl~Re~vH~~~f~~ALe~l~ 195 (283)
T PF05067_consen 154 RLQYERLYEMTDDPGVKDMLSFLLAREIVHQQQFGKALEELQ 195 (283)
T ss_dssp HHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457888889999999999999999999999999999883
No 77
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=35.70 E-value=1e+02 Score=24.44 Aligned_cols=39 Identities=21% Similarity=0.043 Sum_probs=31.1
Q ss_pred HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccC
Q 039934 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKL 220 (329)
Q Consensus 182 l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~ 220 (329)
++..-.-|.+.+++..++.+|..|..+...++..+...+
T Consensus 20 la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~ 58 (125)
T cd01044 20 LAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPP 58 (125)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 344445577999999999999999999998887776554
No 78
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=34.98 E-value=2.4e+02 Score=22.67 Aligned_cols=58 Identities=22% Similarity=0.134 Sum_probs=44.5
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC--------------------HHHHHHHHHHHHHHHHHhhH
Q 039934 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS--------------------EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~--------------------~~~i~~~~~eav~~E~~~~~ 241 (329)
+..-++++...++-+..+|..|..-.+.-+..+-..|+ ...+.++++.+++.|...+.
T Consensus 33 ~g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~ 110 (148)
T cd01052 33 KGPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISGCKCGYLPPDPPDVKGILKVNLKAERCAIK 110 (148)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhcccccCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 33348999999999999999999998888877754332 12466788888888887664
No 79
>PF06556 ASFV_p27: IAP-like protein p27 C-terminus; InterPro: IPR010549 This entry represents the C-terminal region of the African swine fever virus (ASFV) IAP-like protein p27. This domain is found in conjunction with IPR001370 from INTERPRO. It has been suggested that the domain may be incoded by the gene involved in aspects of infection in the arthropod host, ticks of the genus Ornithodoros [].
Probab=33.88 E-value=50 Score=25.80 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=26.5
Q ss_pred HHHHHcCCCCCCC---CCCCc--hhhhhhc-cccCCCccccccccccccc
Q 039934 266 RLLGALGCGKVYG---VTNPF--DWMELIS-LQGKTNFFEKRVGEYQKAS 309 (329)
Q Consensus 266 ~~l~~lG~~~~y~---~~nP~--~w~~~~~-~~~~~nFFe~~~~~Y~~~~ 309 (329)
+||+.+|+.+.|- -.|-+ ||-.-+. ..-+-+||-=+..+|.-+-
T Consensus 35 KRLedmgfsK~fmrFiLaNafiPpyrkyihKiiLNEryFtFkf~ayLlsf 84 (131)
T PF06556_consen 35 KRLEDMGFSKCFMRFILANAFIPPYRKYIHKIILNERYFTFKFNAYLLSF 84 (131)
T ss_pred hhHHHcCCCcceEEEEeecccCCcHHHHHHHHhhccceEEEehhhhhhhh
Confidence 7999999999762 24432 3433221 1234567887777776543
No 80
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=30.83 E-value=2.5e+02 Score=26.57 Aligned_cols=77 Identities=13% Similarity=0.090 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHhhcC-ChhHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHH
Q 039934 137 VPCVAKKADWALNWIDG-SETFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214 (329)
Q Consensus 137 ~~~l~~k~~~~~~~~~~-~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~ 214 (329)
.|--.++.+|-. +.+ ...+..+++++ +.++++..-.+-..++.-. . -|.........+--|++|+...+.++.
T Consensus 39 I~ls~D~~dw~~--Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~--~-~~e~~~~l~~~~~~E~iHs~sYs~il~ 113 (322)
T PRK13967 39 IPLSNDLASWQT--LSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDA--V-TPHEEAVLTNMAFMESVHAKSYSSIFS 113 (322)
T ss_pred cCchhhHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc--C-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555521 332 23466777776 4688877644432222111 1 255566778888899999999999999
Q ss_pred HHHc
Q 039934 215 LLRN 218 (329)
Q Consensus 215 ~l~~ 218 (329)
.+..
T Consensus 114 tl~~ 117 (322)
T PRK13967 114 TLCS 117 (322)
T ss_pred HhCC
Confidence 8854
No 81
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=29.74 E-value=1.2e+02 Score=25.95 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=30.2
Q ss_pred HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 039934 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 215 (329)
Q Consensus 181 ~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~ 215 (329)
..+++--+|.++..++.|+.+|..|..-...++..
T Consensus 28 ~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~ 62 (166)
T COG1592 28 KVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGK 62 (166)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34778889999999999999999999988777764
No 82
>PTZ00072 40S ribosomal protein S13; Provisional
Probab=29.69 E-value=86 Score=26.10 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=40.1
Q ss_pred HHHHhcCCCcchHHHHHHHHhhhh----hHHHHHHHHHHHHHccC--C--HHHHHHHHHHHHHHHHH
Q 039934 180 FWLKKRGLMPGLTFSNELISRDEG----LHCDFACLLYSLLRNKL--S--EERVKGIVKEAVEIERE 238 (329)
Q Consensus 180 ~~l~~~~~l~g~~~~i~~I~rDE~----~H~~~~~~l~~~l~~~~--~--~~~i~~~~~eav~~E~~ 238 (329)
.-|+++|..|. .|--|.||+. .....|..+.+.|...- | +++.+-+++.||..-+-
T Consensus 35 ~klaKkG~~pS---qIG~iLRD~~gi~~vk~vtG~kI~rILk~~Glap~iPeDly~LikKAv~iRkH 98 (148)
T PTZ00072 35 CKLAKKGLTPS---QIGVILRDSMGIPQVKNVTGSKILRILKKNGLAPEIPEDLYFLIKKAVSIRKH 98 (148)
T ss_pred HHHHHCCCCHh---HhhhhhhhccCccceeeccchHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHH
Confidence 35788887676 7889999994 33344667777776542 1 68899999999986553
No 83
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=29.11 E-value=3.6e+02 Score=22.97 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=92.3
Q ss_pred HHHhhcChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 039934 85 RFMKEVQVSEAR-AFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIA 163 (329)
Q Consensus 85 ~~~~~~~~~E~~-~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~ 163 (329)
.+....++++.. .++.........+.+.+..+++.++.+.++ .....-.|..+.=.+++.+.... .++...+++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~----~~~~~~~p~~~~y~~~l~~~a~~-~~~~~~l~a 124 (210)
T PF03070_consen 50 LLASKAPDPEEQRELLSRLIQEIEEELELHEDFAEELGISRED----LENIEPSPATRAYTDFLLSLAQT-GSLAEGLAA 124 (210)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH----HHHSTC-HHHHHHHHHHHHHHHH-SSHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH----HHhhhhhhHHHHHHHHHHHHhcc-CCHHHHHHH
Confidence 345566777766 455544445556677778888888665532 44556678777777777766432 246777777
Q ss_pred HHHHHHHHhHhHHHHHHHHHhcCC-Ccc--hHHHHHHHHhhhh-hHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Q 039934 164 FACVEGIFFSGSFCAIFWLKKRGL-MPG--LTFSNELISRDEG-LHCDFACLLYSLLRNKLS---EERVKGIVKEAVEIE 236 (329)
Q Consensus 164 ~~~lEgi~f~s~F~~~~~l~~~~~-l~g--~~~~i~~I~rDE~-~H~~~~~~l~~~l~~~~~---~~~i~~~~~eav~~E 236 (329)
+..+|.++...+ -.+..... .++ ...-|+.=.-++- -++.-...+++.+....+ .+++.+++..+++.|
T Consensus 125 l~pc~~~Y~~~~----~~~~~~~~~~~~~~y~~wi~~y~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~E 200 (210)
T PF03070_consen 125 LLPCEWIYAEIG----KRLAEKLRAPEDNPYQEWIDMYASEEFEAFVEWLEELLDELAAEASDEERERLEEIFRRSCELE 200 (210)
T ss_dssp HHHHHHHHHHHH----HHHHHHCSTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHhccccCCCCccHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 766666654333 12332222 222 4555555555554 346666667766665544 467889999999999
Q ss_pred HHhhHhhc
Q 039934 237 REFVCDAL 244 (329)
Q Consensus 237 ~~~~~~~~ 244 (329)
..|-+...
T Consensus 201 ~~Fwd~a~ 208 (210)
T PF03070_consen 201 YDFWDAAY 208 (210)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99887543
No 84
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=28.83 E-value=3.3e+02 Score=22.39 Aligned_cols=58 Identities=19% Similarity=0.090 Sum_probs=43.2
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHhhH
Q 039934 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---------EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~i~~~~~eav~~E~~~~~ 241 (329)
..--++|++......+.||..|..-...-+..+-..|. ...+.++++.+++.|...+.
T Consensus 33 ~~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~~~~~e~l~~~l~~E~~~~~ 99 (157)
T TIGR00754 33 KNWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIGETVREMLEADLALELDVLN 99 (157)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44569999999999999999999876665555533221 23567888899998888774
No 85
>PF13668 Ferritin_2: Ferritin-like domain
Probab=28.69 E-value=3e+02 Score=21.90 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=22.6
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039934 85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLL 117 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il 117 (329)
...+.+++|+.+..++..+..|+.|......++
T Consensus 103 g~~~~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 103 GAAPQIEDPELKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667777777777777777777777655543
No 86
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=26.89 E-value=4.1e+02 Score=22.80 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=29.2
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039934 85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI 121 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~ 121 (329)
.++++... |..-||.--+..|++|-..|-.+-+.++
T Consensus 133 ~Laphlde-elakFY~gLl~SEaRHfqdYl~LA~qy~ 168 (203)
T COG4445 133 ALAPHLDE-ELAKFYKGLLRSEARHFQDYLVLADQYF 168 (203)
T ss_pred hhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555544 8888888888999999999998888885
No 87
>COG3313 Predicted Fe-S protein [General function prediction only]
Probab=26.09 E-value=66 Score=23.56 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=19.1
Q ss_pred ccHHHHhcCCHHHHHHHHHHHHHH
Q 039934 48 QDIRQWESLTADEKHFITHVLAFF 71 (329)
Q Consensus 48 ~D~~~~~~L~~~er~~~~~~l~~~ 71 (329)
+.+-.|..||+.||..+...+-..
T Consensus 30 ~Ei~~W~~msd~Er~aVl~~l~qr 53 (74)
T COG3313 30 DEIFNWSSMSDDERRAVLRLLPQR 53 (74)
T ss_pred HHHHHHhhCCHHHHHHHHHHhHHH
Confidence 456789999999999888776443
No 88
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=24.24 E-value=2.6e+02 Score=20.69 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=14.2
Q ss_pred cCCHHHHHHHHHHHHHH
Q 039934 55 SLTADEKHFITHVLAFF 71 (329)
Q Consensus 55 ~L~~~er~~~~~~l~~~ 71 (329)
.||+.||..+...|.-+
T Consensus 15 lLt~~ER~~i~qaL~~y 31 (80)
T cd07355 15 LLTPPERYGIKKALEDY 31 (80)
T ss_pred hCCHHHHHHHHHHHHHH
Confidence 59999999998887554
No 89
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=22.91 E-value=4.2e+02 Score=21.54 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=68.3
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 039934 88 KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACV 167 (329)
Q Consensus 88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~l 167 (329)
.....|....++..++..|..|++.....+...++.|. +..+...+. .+ .+....+-...-.
T Consensus 30 ~~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~-----~~~~~~~~~---------~~----~~~~~~l~~al~~ 91 (156)
T cd01055 30 DSKGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVE-----LPAIEAPPS---------EF----ESLLEVFEAALEH 91 (156)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCee-----CCCCCCCCc---------cc----CCHHHHHHHHHHH
Confidence 33466888889999999999999999988887764442 111111010 00 0111111111123
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 168 Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
|-- ....+.-+...+....=+.++..++++..||.-|......++..+.
T Consensus 92 E~~-~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~l~ 140 (156)
T cd01055 92 EQK-VTESINNLVDLALEEKDYATFNFLQWFVKEQVEEEALARDILDKLK 140 (156)
T ss_pred HHH-HHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2233444445566666699999999999999999988777776665
No 90
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=22.73 E-value=2.1e+02 Score=23.16 Aligned_cols=51 Identities=16% Similarity=-0.013 Sum_probs=36.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---------------------HHHHHHHHHHHHHHHHHhhH
Q 039934 191 LTFSNELISRDEGLHCDFACLLYSLLRNKLS---------------------EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 191 ~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------------------~~~i~~~~~eav~~E~~~~~ 241 (329)
...++..|++.|..|......+++...-..| ..-..+.++-++..|...+.
T Consensus 28 ~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~~s~~~al~~g~~~E~~~i~ 99 (135)
T cd01048 28 GLRPFSNIAESEQRHMDALKTLLERYGLPDPVDPFSGGVFTNPQYNQLVEQGPKSLQDALEVGVLIEELDIA 99 (135)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccchhHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999888875542111 01244677788888887764
No 91
>COG3687 Predicted metal-dependent hydrolase [General function prediction only]
Probab=22.25 E-value=6.2e+02 Score=23.32 Aligned_cols=148 Identities=13% Similarity=0.014 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcH
Q 039934 60 EKHFITHVLAFF-AASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVP 138 (329)
Q Consensus 60 er~~~~~~l~~~-~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~ 138 (329)
.+..+.+.|+.+ -.++....+.. ....+.+++|..+-=..-++-+|++|++.=+.+.+-+.. . . +...+
T Consensus 36 ~~T~vfNaLs~LlP~GE~fFvd~v-~a~r~r~sdp~L~~dv~gFI~QEamHSraH~~yn~~~~a--~-----~--~p~~e 105 (280)
T COG3687 36 VATHVFNALSLLLPAGERFFVDSV-KAYRPRLSDPQLRDDVQGFIGQEAMHSRAHAGYNDRLDA--Q-----G--TPFAE 105 (280)
T ss_pred HHHHHHHHHHHhccchhHHHHHHH-HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-----C--CchHH
Confidence 344444444332 23443333332 245566677766655566667899999998888776621 0 0 11112
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHH-HHHHHHHhHhHHHHHHH--HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 039934 139 CVAKKADWALNWIDGSETFAERLIAF-ACVEGIFFSGSFCAIFW--LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 215 (329)
Q Consensus 139 ~l~~k~~~~~~~~~~~~~~~~~lv~~-~~lEgi~f~s~F~~~~~--l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~ 215 (329)
.+..|.+.+..-+.... .-+-.+++ +++|..-..-|=.++-. +...|-=|-..++-+|=.+.|.-|....--++..
T Consensus 106 ~~~~r~erll~~~~~~~-~r~~q~a~~aAlEHfTA~ma~~il~~~~l~~~~~dP~m~~LwRWHa~EE~EHkaVAyDv~~~ 184 (280)
T COG3687 106 QIAWRFERLLGESPRGS-PRLEQVAIIAALEHFTAVMAEWILEHPQLLLVGADPVMLDLWRWHAAEEVEHKAVAYDVFKH 184 (280)
T ss_pred HHHHHHHHHhhhcCCCC-cHHHHHHHHHHHHHHHHHHHHHHhcCcchhccCCCcHHHHHHHHhhHHHhhhHHHHHHHHHH
Confidence 23333333332222111 11223344 46776533222222210 1223555788999999999999999998888877
Q ss_pred HHc
Q 039934 216 LRN 218 (329)
Q Consensus 216 l~~ 218 (329)
+..
T Consensus 185 v~g 187 (280)
T COG3687 185 VRG 187 (280)
T ss_pred hcc
Confidence 763
No 92
>PF13108 DUF3969: Protein of unknown function (DUF3969)
Probab=22.19 E-value=2e+02 Score=22.74 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=54.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q 039934 196 ELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGK 275 (329)
Q Consensus 196 ~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~ 275 (329)
+.|.-||+-+.-|+-.+++.+.+..-.+++.+++....++|.= -.+-++.+.+.|..+-++++..+.=.+
T Consensus 25 k~Isid~ae~~iF~p~~~~~l~~~~~~~~L~~II~~G~eLEDI----------~~l~P~~L~~~I~~l~~~~l~~l~~~~ 94 (108)
T PF13108_consen 25 KCISIDEAESLIFRPYIIELLDKMGVSKELIDIIHLGCELEDI----------ASLIPEKLNDSIDELENKCLQVLMELS 94 (108)
T ss_pred CCcCHHHHHHHHcCHHHHHHHHHcCCcHHHHHHHHhccchhhH----------HHhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5688899999999999999998777778889998887777754 122356788888888888888775444
Q ss_pred C
Q 039934 276 V 276 (329)
Q Consensus 276 ~ 276 (329)
.
T Consensus 95 ~ 95 (108)
T PF13108_consen 95 D 95 (108)
T ss_pred c
Confidence 3
No 93
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=21.06 E-value=5e+02 Score=23.56 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=31.0
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI 121 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~ 121 (329)
..+++++ ++|.+-||..-+..|++|-..|-.+-..++
T Consensus 174 ~lLa~~l-D~eL~~FY~~Ll~SEArHy~~yl~LA~~y~ 210 (240)
T PF06175_consen 174 ALLAEHL-DEELAKFYRSLLRSEARHYQDYLKLARQYF 210 (240)
T ss_dssp HHHGGGS--HHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHhh-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHC
Confidence 3577788 999999999999999999999988887774
Done!