Query 039934
Match_columns 329
No_of_seqs 129 out of 1208
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 05:01:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1i_A Ribonucleotide reductas 100.0 7.1E-88 2.4E-92 638.6 27.0 322 4-329 28-349 (349)
2 1h0o_A Ribonucleoside-diphosph 100.0 2.7E-86 9.4E-91 633.8 35.5 322 4-329 68-390 (390)
3 1jk0_B RNR Y4, ribonucleoside- 100.0 5.5E-88 1.9E-92 638.5 20.9 324 3-329 21-345 (345)
4 1jk0_A RNR Y2, ribonucleoside- 100.0 9.4E-86 3.2E-90 633.5 28.3 326 3-329 92-419 (419)
5 3olj_A Ribonucleoside-diphosph 100.0 1.7E-80 5.8E-85 574.0 32.7 283 4-286 3-286 (286)
6 1syy_A Ribonucleoside-diphosph 100.0 9.3E-80 3.2E-84 583.8 32.7 306 3-311 14-344 (346)
7 4a58_A Ribonucleoside-diphosph 100.0 2.8E-79 9.6E-84 574.0 28.8 300 3-308 12-319 (324)
8 2o1z_A Ribonucleotide reductas 100.0 8.3E-79 2.8E-83 568.2 31.5 285 3-287 26-310 (311)
9 2rcc_A Ribonucleoside-diphosph 100.0 1.4E-78 4.9E-83 575.9 31.8 306 5-312 18-341 (346)
10 1mxr_A Ribonucleotide reductas 100.0 4.7E-78 1.6E-82 577.5 33.9 309 3-314 11-365 (375)
11 4dr0_A Ribonucleoside-diphosph 100.0 1.8E-75 6E-80 553.2 33.1 306 10-325 22-343 (350)
12 3n37_A Ribonucleoside-diphosph 100.0 8.1E-75 2.8E-79 543.7 34.6 295 13-313 5-312 (319)
13 3dhz_A Ribonucleotide reductas 100.0 2.7E-74 9.3E-79 542.0 34.2 293 15-313 17-322 (329)
14 3mjo_A Ribonucleotide reductas 100.0 1.5E-67 5.1E-72 489.4 34.7 265 14-283 15-290 (296)
15 3ee4_A Probable ribonucleoside 100.0 2.5E-61 8.6E-66 452.1 24.8 264 4-279 12-294 (323)
16 2inc_A Toluene, O-xylene monoo 98.4 5.3E-05 1.8E-09 74.1 21.5 220 54-276 82-313 (491)
17 1mty_D Methane monooxygenase h 98.1 0.00033 1.1E-08 68.7 20.5 164 53-219 78-246 (512)
18 3ge3_A Toluene-4-monooxygenase 97.9 0.00047 1.6E-08 67.2 17.3 218 53-276 82-314 (500)
19 2inc_B Toluene, O-xylene monoo 97.8 0.0086 2.9E-07 55.4 24.4 209 54-272 104-322 (322)
20 3pvt_A Phenylacetic acid degra 97.7 0.013 4.6E-07 53.7 23.4 204 55-276 24-243 (311)
21 2uw1_A Desaturase, plastid del 97.6 0.0071 2.4E-07 55.9 19.6 176 25-221 20-223 (338)
22 3ge3_B Toluene-4-monooxygenase 97.3 0.028 9.6E-07 52.0 19.1 163 54-219 108-275 (327)
23 3u52_C Phenol hydroxylase comp 97.2 0.074 2.5E-06 49.3 21.7 210 53-275 108-328 (333)
24 1mhy_B Methane monooxygenase h 97.2 0.028 9.5E-07 53.3 18.4 166 52-219 135-308 (395)
25 3u52_A Phenol hydroxylase comp 97.1 0.046 1.6E-06 53.6 19.2 211 53-276 86-318 (511)
26 1mty_B Methane monooxygenase h 96.9 0.024 8.2E-07 53.6 15.3 164 53-219 128-300 (384)
27 1za0_A Possible acyl-[acyl-car 96.8 0.035 1.2E-06 49.9 15.2 178 25-223 16-210 (275)
28 3chh_A P-aminobenzoate N-oxyge 96.6 0.38 1.3E-05 44.6 20.4 174 37-223 58-248 (336)
29 3pf7_A Benzoyl-COA oxygenase c 96.0 0.068 2.3E-06 50.7 12.1 151 52-218 97-256 (481)
30 2oc5_A Hypothetical protein; D 95.9 0.69 2.4E-05 39.0 20.2 199 57-275 28-231 (244)
31 1otk_A Protein PAAC, phenylace 92.4 5.3 0.00018 35.1 17.1 191 65-274 6-210 (249)
32 1zpy_A Hypothetical protein NE 90.7 4 0.00014 30.3 10.9 68 54-126 11-78 (95)
33 1rcw_A CT610, CADD; iron, DI-i 88.8 10 0.00035 32.2 21.9 199 29-244 11-219 (231)
34 3bjd_A Putative 3-oxoacyl-(acy 87.7 16 0.00056 33.3 15.0 152 85-244 162-323 (332)
35 3b5o_A CADD-like protein of un 82.8 24 0.0008 30.8 16.1 139 93-241 72-223 (244)
36 4di0_A Rubrerythrin; ssgcid, s 80.5 20 0.00069 28.5 13.0 107 84-215 35-141 (144)
37 3k6c_A Uncharacterized protein 78.6 18 0.00061 26.8 10.9 67 54-125 11-77 (95)
38 3dde_A TENA/THI-4 protein, dom 78.1 32 0.0011 29.4 16.0 150 86-242 62-216 (239)
39 3pwf_A Rubrerythrin; non heme 75.5 32 0.0011 28.2 14.0 102 84-219 29-130 (170)
40 1yuz_A Nigerythrin; rubrythrin 75.2 36 0.0012 28.6 15.1 114 86-219 53-166 (202)
41 2a2m_A Hypothetical protein BT 70.3 55 0.0019 28.5 16.4 120 111-244 127-249 (258)
42 1za0_A Possible acyl-[acyl-car 69.4 19 0.00066 32.0 8.5 42 84-125 167-209 (275)
43 3k6c_A Uncharacterized protein 68.3 21 0.00071 26.4 7.0 55 156-216 19-74 (95)
44 1zpy_A Hypothetical protein NE 66.8 27 0.00092 25.9 7.4 55 156-216 19-74 (95)
45 3qhb_A Symerythrin, ORF180; fo 66.6 54 0.0019 27.1 15.9 124 85-217 49-176 (179)
46 2hz8_A De novo designed DIIRON 63.6 16 0.00056 28.0 5.9 49 189-241 61-109 (115)
47 1j30_A 144AA long hypothetical 58.8 62 0.0021 25.2 15.9 107 86-217 33-141 (144)
48 3uno_A Probable bacterioferrit 58.5 66 0.0023 26.6 9.5 60 181-241 35-104 (189)
49 1yuz_A Nigerythrin; rubrythrin 56.7 62 0.0021 27.2 9.1 60 181-240 52-120 (202)
50 3oj5_A Ferritin family protein 55.6 78 0.0027 25.8 9.5 59 182-241 36-104 (189)
51 2uw1_A Desaturase, plastid del 55.2 60 0.002 29.7 9.2 37 85-121 183-219 (338)
52 2qcx_A Transcriptional activat 54.8 1.1E+02 0.0036 26.7 22.4 150 86-245 85-241 (263)
53 4am5_A Bacterioferritin; metal 54.1 79 0.0027 24.9 9.6 58 184-241 33-99 (159)
54 3uoi_A Bacterioferritin, BFR; 51.3 45 0.0015 26.2 7.1 58 184-241 35-101 (161)
55 1lko_A Rubrerythrin all-iron(I 51.0 1E+02 0.0036 25.4 12.7 114 85-219 32-145 (191)
56 3oql_A TENA homolog; transcrip 48.5 1.4E+02 0.0048 26.1 13.2 199 25-244 20-245 (262)
57 3e6s_A Ferritin; iron storage, 47.6 1.1E+02 0.0037 24.7 9.4 61 180-241 28-100 (168)
58 1nfv_A Bacterioferritin; 24 su 47.1 1.1E+02 0.0037 24.5 16.5 106 92-217 42-147 (179)
59 3qb9_A Bacterioferritin, BFR; 46.4 1.1E+02 0.0037 24.3 14.0 109 89-217 36-144 (174)
60 3uoi_A Bacterioferritin, BFR; 44.8 1.1E+02 0.0037 23.8 13.7 110 88-217 35-144 (161)
61 2y3q_A Bacterioferritin; metal 44.1 69 0.0024 24.8 7.1 58 184-241 33-99 (158)
62 1nfv_A Bacterioferritin; 24 su 43.8 57 0.002 26.2 6.7 57 185-241 39-104 (179)
63 3gvy_A Bacterioferritin; iron 43.4 1.2E+02 0.0039 23.7 10.1 59 183-241 32-99 (161)
64 4am5_A Bacterioferritin; metal 43.1 1.2E+02 0.0041 23.8 14.3 112 86-217 31-142 (159)
65 2fzf_A Hypothetical protein; s 41.8 1.3E+02 0.0045 23.9 8.7 53 67-120 109-161 (175)
66 3qb9_A Bacterioferritin, BFR; 39.8 84 0.0029 25.0 7.1 58 184-241 35-101 (174)
67 3hl1_A Ferritin like protein; 38.7 68 0.0023 29.0 6.7 39 179-219 33-71 (317)
68 1o9i_A Pseudocatalase; oxidore 38.1 60 0.002 28.7 6.2 37 84-120 156-192 (266)
69 1udd_A Transcriptional regulat 37.9 1.8E+02 0.0061 24.3 15.5 139 92-244 65-212 (226)
70 2fzf_A Hypothetical protein; s 37.1 1.6E+02 0.0054 23.5 15.1 120 84-218 40-163 (175)
71 1vlg_A Ferritin; TM1128, struc 35.9 1.7E+02 0.0057 23.4 9.4 55 187-241 49-113 (176)
72 2v8t_A Manganese-containing ps 35.7 52 0.0018 29.7 5.4 70 36-120 130-199 (302)
73 3fvb_A Bacterioferritin; niaid 34.4 1.8E+02 0.0062 23.4 9.4 89 154-243 25-122 (182)
74 2gm8_A TENA homolog/THI-4 thia 33.2 2.1E+02 0.0072 23.8 18.9 144 86-244 66-218 (221)
75 1lko_A Rubrerythrin all-iron(I 32.2 67 0.0023 26.6 5.4 56 183-240 34-99 (191)
76 3ez0_A Uncharacterized protein 31.6 2.4E+02 0.0084 24.0 19.9 197 59-274 11-224 (225)
77 1o9i_A Pseudocatalase; oxidore 30.8 2.7E+02 0.0094 24.4 11.5 120 90-217 49-193 (266)
78 2v2p_A Ferritin light chain; m 29.0 1.7E+02 0.0058 23.5 7.2 56 186-241 42-108 (174)
79 1s3q_A Ferritin; ferroxidase, 28.6 2.3E+02 0.0078 22.7 9.7 56 186-241 36-101 (173)
80 3gvy_A Bacterioferritin; iron 28.3 2.1E+02 0.0071 22.1 12.7 110 88-217 33-142 (161)
81 2y3q_A Bacterioferritin; metal 27.8 2E+02 0.007 21.9 15.8 109 89-217 34-142 (158)
82 3olj_A Ribonucleoside-diphosph 27.8 1.2E+02 0.004 26.9 6.5 70 156-230 61-131 (286)
83 4dr0_A Ribonucleoside-diphosph 27.3 1.5E+02 0.0052 27.0 7.3 59 156-217 74-134 (350)
84 3qhb_A Symerythrin, ORF180; fo 26.5 2.7E+02 0.0091 22.8 8.0 35 86-120 141-175 (179)
85 2qzc_A Transcriptional activat 26.3 2.7E+02 0.0093 22.9 17.4 133 92-244 67-207 (214)
86 2o1z_A Ribonucleotide reductas 25.1 1.3E+02 0.0043 27.0 6.2 70 156-230 85-155 (311)
87 3bvf_A Ferritin; iron storage, 23.0 3E+02 0.01 22.1 9.6 58 184-241 46-113 (181)
88 2xzm_O RPS13E; ribosome, trans 22.5 83 0.0028 25.2 3.8 55 180-237 40-102 (153)
89 2oh3_A Rubrerythrin, COG1633: 20.9 3.1E+02 0.01 21.5 13.4 114 89-218 33-151 (167)
90 3u5c_N S27A, YS15, 40S ribosom 20.4 83 0.0028 25.2 3.4 55 180-237 38-100 (151)
91 3mjo_A Ribonucleotide reductas 20.3 1.2E+02 0.004 27.0 4.9 60 156-218 63-123 (296)
No 1
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii}
Probab=100.00 E-value=7.1e-88 Score=638.65 Aligned_cols=322 Identities=64% Similarity=1.142 Sum_probs=253.2
Q ss_pred CCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039934 4 IPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLA 83 (329)
Q Consensus 4 ~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~ 83 (329)
..+|+||+||+.|++++|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+++|++|+++++
T Consensus 28 ~~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~~l~ 107 (349)
T 2p1i_A 28 ESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLA 107 (349)
T ss_dssp -------------------CCHHHHHHHHHHHTTCCCGGGTCGGGCSHHHHHSCTTTHHHHHHHHHHHTTC-----CCCH
T ss_pred cccCccccCCCcccccCCCcchHHHHHHHHHHHcCCchhhcCccccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIA 163 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~ 163 (329)
+.+++.++.||+++++++|+++|+||+++||+|+++++.||.+++++|+++.++|.|++|++|+.+++++++++++++++
T Consensus 108 ~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~lva 187 (349)
T 2p1i_A 108 SKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNSFAERIVA 187 (349)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCSSCHHHHHHH
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999877789999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhHhh
Q 039934 164 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDA 243 (329)
Q Consensus 164 ~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~ 243 (329)
++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++++||++|++|+.+.
T Consensus 188 ~~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~v~~l~~eave~E~~~~~~~ 267 (349)
T 2p1i_A 188 NACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICES 267 (349)
T ss_dssp HHHHTTTTTHHHHHHHHHHHTTTCSTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhhhhhccccCCCcccccccccccccccccCCCCCCCccc
Q 039934 244 LPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNHVF 323 (329)
Q Consensus 244 ~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~~~~ 323 (329)
++++++|++.+++++||+|+||+||.+||++|+|++.||+|||+.++..+|+||||+++++|+|++++...+ +++|
T Consensus 268 l~~~~~Gl~~~~~~~Yi~y~an~~L~~LG~~~~y~~~nP~~wm~~~~~~~k~nFFe~r~~~Y~k~~~~~~~~----~~~~ 343 (349)
T 2p1i_A 268 LPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVFHSKNPFNWMDLISLQGKTNFFEKRVADYQKSGVMAQRK----EQVF 343 (349)
T ss_dssp SCSTTTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCSCCC--------------------------------------
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHhcccccCCcccCCccccccccccccCC----CCee
Confidence 889999999999999999999999999999999999999999999888888999999999999998776542 6789
Q ss_pred ccCCCC
Q 039934 324 KMDEDF 329 (329)
Q Consensus 324 ~~~~~f 329 (329)
+|||||
T Consensus 344 ~~~~~f 349 (349)
T 2p1i_A 344 SLNTDF 349 (349)
T ss_dssp ------
T ss_pred ecCCCC
Confidence 999998
No 2
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A
Probab=100.00 E-value=2.7e-86 Score=633.80 Aligned_cols=322 Identities=69% Similarity=1.174 Sum_probs=276.8
Q ss_pred CCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039934 4 IPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLA 83 (329)
Q Consensus 4 ~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~ 83 (329)
+++|+||+||+.|++++|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+++|++|++++.
T Consensus 68 ~~~e~ll~~n~~r~~l~PikY~~~~~ly~k~~~nfW~peEIdls~D~~dw~~Lt~~Er~~~~~vla~fa~~Dsiv~~nl~ 147 (390)
T 1h0o_A 68 VEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLV 147 (390)
T ss_dssp CTTCTTTSSCCSCCCSSSCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccCCCcccccCCCCCHHHHHHHHHHHHcCCchhhcchhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC-ChhHHHHHH
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG-SETFAERLI 162 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~-~~~~~~~lv 162 (329)
+.+++.++.||+++|+++|+++|+||+++||+|+++++.||.+++++|+++.++|.|++|++|+.+++++ +.+++++++
T Consensus 148 ~~~~~~v~~pE~~~~~~~Q~~~EaiHsesYS~il~tl~~d~~e~~~if~~~~~~p~l~~Ka~~i~~~~~~~~~~~~~~lv 227 (390)
T 1h0o_A 148 ERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVV 227 (390)
T ss_dssp HTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCHHHHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 8999999999999999999999999999999999999889999999999999999999999999999975 457999999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhHh
Q 039934 163 AFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCD 242 (329)
Q Consensus 163 ~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~ 242 (329)
+++++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.+++++++|++++.+||++|++|+.+
T Consensus 228 a~~~lEGi~Fys~F~~~~~l~~rg~MpG~~~~i~lI~RDE~lH~~f~~~l~~~l~~~~~~~~v~el~~eave~E~~~~~~ 307 (390)
T 1h0o_A 228 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTE 307 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhhhhhccccCCCcccccccccccccccccCCCCCCCcc
Q 039934 243 ALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNHV 322 (329)
Q Consensus 243 ~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~~~ 322 (329)
+++++++|++.+++++||+|+||++|.+||++|+|++.||+|||+.++..+|+||||+++++|+|++++.... +++
T Consensus 308 ~~~~~~iGl~~~~~~~YI~y~Anr~L~~LG~~~~y~~~NP~~wm~~~s~~~ktnFFE~r~t~Y~k~~~~~~~~----~~~ 383 (390)
T 1h0o_A 308 ALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSNST----ENS 383 (390)
T ss_dssp TSCGGGGTCCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCSCGGGC-----------------------------------
T ss_pred hccCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCChHHHHhhcccccCccccCCccccccccccccCc----Cce
Confidence 9999999999999999999999999999999999999999999999888888999999999999998776532 678
Q ss_pred cccCCCC
Q 039934 323 FKMDEDF 329 (329)
Q Consensus 323 ~~~~~~f 329 (329)
|+|||||
T Consensus 384 ~~~~~~f 390 (390)
T 1h0o_A 384 FTLDADF 390 (390)
T ss_dssp -------
T ss_pred eecCCCC
Confidence 9999998
No 3
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Probab=100.00 E-value=5.5e-88 Score=638.49 Aligned_cols=324 Identities=44% Similarity=0.796 Sum_probs=246.7
Q ss_pred CCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 039934 3 SIPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENL 82 (329)
Q Consensus 3 ~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l 82 (329)
.+++|+||+||+.|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++
T Consensus 21 ~~~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~nl 100 (345)
T 1jk0_B 21 AEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYL 100 (345)
T ss_dssp HTTTCTTTSCCTTCCSCCSCSCHHHHHHHHHHHHTCCCGGGCCCTTTSTTTTTSCTTHHHHHHHHHHHHC---------C
T ss_pred hhhcCchhcCCCcccccCCCcchHHHHHHHHHHHcCCChhhcChhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC-ChhHHHHH
Q 039934 83 AARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG-SETFAERL 161 (329)
Q Consensus 83 ~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~-~~~~~~~l 161 (329)
.+.+++.++.||+++++++|+++|+||+++||+|+++++.||.++ ++|+++.++|.|++|++|+.+++++ +.++++++
T Consensus 101 ~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~e~-~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~l 179 (345)
T 1jk0_B 101 IENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNI-PLFKEIANLPEVKHKAAFIERWISNDDSLYAERL 179 (345)
T ss_dssp HHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTS-CSGGGGCSCHHHHHHHHHHHHTTSSSSCCHHHHH
T ss_pred HHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHhhCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 989999999999999999999999999999999999998789888 8999999999999999999999974 55699999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhH
Q 039934 162 IAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 162 v~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~ 241 (329)
++++++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++++||++|++|+.
T Consensus 180 va~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~v~~l~~eave~E~~~~~ 259 (345)
T 1jk0_B 180 VAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYS 259 (345)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhhhhhccccCCCcccccccccccccccccCCCCCCCc
Q 039934 242 DALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNH 321 (329)
Q Consensus 242 ~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~~ 321 (329)
++++++++|++.+++++||+|+||+||.+||++|+|++.||+|||+.++..+++||||+++++|+|++++.+... .++
T Consensus 260 ~~l~~~~~Gl~~~~~~~Yi~y~an~~L~~LG~~~~y~~~nP~~wm~~~~~~~k~nFFe~r~~~Y~~~~~~~~~~~--~~~ 337 (345)
T 1jk0_B 260 NSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAVNPFEFMEDVATAGKTTFFEKKVSDYQKASDMSKSAT--PSK 337 (345)
T ss_dssp TSCC-----------CTHHHHHHHHHHHHTTCCCCC--------------------------------------------
T ss_pred HhccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHhcccccCccccCCcchhhcccccccccC--CCc
Confidence 888999999999999999999999999999999999999999999998887889999999999999987765421 267
Q ss_pred ccccCCCC
Q 039934 322 VFKMDEDF 329 (329)
Q Consensus 322 ~~~~~~~f 329 (329)
+|+|||||
T Consensus 338 ~~~~~~~f 345 (345)
T 1jk0_B 338 EINFDDDF 345 (345)
T ss_dssp --------
T ss_pred eeecCCCC
Confidence 89999998
No 4
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Probab=100.00 E-value=9.4e-86 Score=633.54 Aligned_cols=326 Identities=62% Similarity=1.044 Sum_probs=278.0
Q ss_pred CCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 039934 3 SIPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWE-SLTADEKHFITHVLAFFAASDGIVLEN 81 (329)
Q Consensus 3 ~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~-~L~~~er~~~~~~l~~~~~~d~~v~~~ 81 (329)
.+++|+||.+|+.|++++|++|||+|++|+++.++||+|+|||+++|+.||+ +||+.||++++++|++|+++|++|+++
T Consensus 92 ~~~~e~ll~~n~~r~~l~PikY~~~~~lykk~~anfW~peEIdls~D~~dw~~~Lt~~Er~~~~~vLa~fa~~Dsiv~~n 171 (419)
T 1jk0_A 92 MEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNEN 171 (419)
T ss_dssp HGGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHHTCCHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred hhhhCccccCCccccccCCcCcHHHHHHHHHHHHcCCchhhcchhccHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC-ChhHHHH
Q 039934 82 LAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG-SETFAER 160 (329)
Q Consensus 82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~-~~~~~~~ 160 (329)
+.+.+++.++.||+++|+++|+++|+||+++||+|+++++.||.+|+++|+++.++|.|++|++|+.+++++ +.+++++
T Consensus 172 l~~~l~~~v~~pE~~~~~~~Q~~~EaIHsesYS~il~tl~~d~~e~~~iF~~i~~~p~L~~Ka~~i~~~~~~~~~~~~~~ 251 (419)
T 1jk0_A 172 LVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGER 251 (419)
T ss_dssp HCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHhccchhHHHH
Confidence 988899999999999999999999999999999999999889999999999999999999999999999975 4569999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhh
Q 039934 161 LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFV 240 (329)
Q Consensus 161 lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~ 240 (329)
+++++++|||+|+|+|+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.+++++++|++++.+||++|++|+
T Consensus 252 lva~~~lEGI~fsg~Fa~~~~l~~rg~MpG~~~~i~lI~RDE~lH~~f~~~l~~~l~~~~~~e~v~el~~eave~E~~~~ 331 (419)
T 1jk0_A 252 LVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYF 331 (419)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhhhhhccccCCCcccccccccccccccccCCCCCCC
Q 039934 241 CDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGN 320 (329)
Q Consensus 241 ~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~ 320 (329)
.++++++++|++.+++++||+|+||++|.+||++|+|++.||+|||+.++..+++||||+++++|+|++++..++ ...+
T Consensus 332 ~~~lp~~liGln~~~~~~YI~Y~Anr~L~~LG~~~~y~~~NP~~wm~~is~~~ktnFFE~r~t~Y~k~~~~~~~~-~~~~ 410 (419)
T 1jk0_A 332 LDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMENISLAGKTNFFEKRVSDYQKAGVMSKST-KQEA 410 (419)
T ss_dssp HTTSCGGGGTCCHHHHHHHHHHHHHHHHHTTTCCCSSCCCCCCGGGGC--------------------------------
T ss_pred HHhccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHhccccccccCcCCcccccccccccccC-CCCC
Confidence 999999999999999999999999999999999999999999999999888888999999999999998776542 1237
Q ss_pred cccccCCCC
Q 039934 321 HVFKMDEDF 329 (329)
Q Consensus 321 ~~~~~~~~f 329 (329)
+.|.||+||
T Consensus 411 ~~~~~~~~f 419 (419)
T 1jk0_A 411 GAFTFNEDF 419 (419)
T ss_dssp ---------
T ss_pred CccccCCCC
Confidence 789999998
No 5
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=100.00 E-value=1.7e-80 Score=573.95 Aligned_cols=283 Identities=70% Similarity=1.188 Sum_probs=276.1
Q ss_pred CCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039934 4 IPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLA 83 (329)
Q Consensus 4 ~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~ 83 (329)
+++|+||.+|+.|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++.
T Consensus 3 ~~~e~~l~~~~~r~~~~pikY~~~~~~ykk~~~~fW~peEI~ls~D~~dw~~L~~~Er~~~~~~l~~~~~~D~iv~~~l~ 82 (286)
T 3olj_A 3 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLV 82 (286)
T ss_dssp STTCTTTSCCTTTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCTTSHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCccccCCCCCeeeeCCCchHHHHHHHHHHHcCCChHHcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC-ChhHHHHHH
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG-SETFAERLI 162 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~-~~~~~~~lv 162 (329)
+.+++.++.||+++|+++|+++|+||+++||+|+++++.||++++++|+++.++|.|++|++|+.+++.+ +.+++++++
T Consensus 83 ~~~~~~v~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~~lv 162 (286)
T 3olj_A 83 ERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVV 162 (286)
T ss_dssp HTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCGGGHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCChhHHHHHHH
Confidence 8999999999999999999999999999999999999989999999999999999999999999999965 456899999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhHh
Q 039934 163 AFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCD 242 (329)
Q Consensus 163 ~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~ 242 (329)
+++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++++||++|++|+.+
T Consensus 163 a~~~lEgi~f~~~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eave~E~~~~~~ 242 (286)
T 3olj_A 163 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTE 242 (286)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhh
Q 039934 243 ALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWM 286 (329)
Q Consensus 243 ~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~ 286 (329)
+++++++|||.+.+++||+|+||+||.+||++|+|+++||+|||
T Consensus 243 ~l~~~~~Gl~~~~~~~yi~y~An~~L~~lG~~~~f~~~nP~~~m 286 (286)
T 3olj_A 243 ALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFM 286 (286)
T ss_dssp TSCGGGGTCCHHHHHHHHHHHHHHHHHHHTCCCSSCCCCCCTTC
T ss_pred HcCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Confidence 99889999999999999999999999999999999999999997
No 6
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Probab=100.00 E-value=9.3e-80 Score=583.79 Aligned_cols=306 Identities=29% Similarity=0.547 Sum_probs=267.4
Q ss_pred CCCCCCCCCC-CCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Q 039934 3 SIPEEPLLTP-NPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWE--SLTADEKHFITHVLAFFAASDGIVL 79 (329)
Q Consensus 3 ~~~~e~il~~-~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~--~L~~~er~~~~~~l~~~~~~d~~v~ 79 (329)
..++|+||+| +++|++++|++|||+|++|+++.++||.|+|||+++|+.||+ +||+.||++++++|++|+++|++|+
T Consensus 14 ~~~~~~i~~~~~~~~~~~~p~ky~~~~~ly~~~~~~fW~peEIdls~D~~dw~~~~Lt~~Er~~~~~~l~~~~~~D~iv~ 93 (346)
T 1syy_A 14 NLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVG 93 (346)
T ss_dssp CGGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCcCCCCCCcceecCCccHHHHHHHHHHHHcCCcHhhcchhhhHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999 778999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC------
Q 039934 80 ENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG------ 153 (329)
Q Consensus 80 ~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~------ 153 (329)
+++++.+++.++.||+++|+++|+++|+||+++||+|+++++.+++ ++|+++.++|.|++|++|+.+++++
T Consensus 94 ~~~~~~l~~~v~~~E~~~~l~~q~~~EaiHs~sYs~il~tl~~~~~---e~f~~~~~~p~l~~k~~~i~~~y~~~~~~~~ 170 (346)
T 1syy_A 94 NNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEK---EIFNAYNERAAIKAKDDFQMEITGKVLDPNF 170 (346)
T ss_dssp HHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH---HHTTHHHHCHHHHHHHHHHHHTTSGGGSTTC
T ss_pred HhHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHhhCHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999899999999999999999999999999999999999987775 5899999999999999999999863
Q ss_pred -------ChhHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC----
Q 039934 154 -------SETFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---- 221 (329)
Q Consensus 154 -------~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---- 221 (329)
+.+++++++++ +++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+.|
T Consensus 171 ~~~~~~~~~~~~~~lva~~~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~~~~e~p~~~~ 250 (346)
T 1syy_A 171 RTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWT 250 (346)
T ss_dssp CSSSHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhh
Confidence 25789999999 599999999999999999999999999999999999999999999999999887544
Q ss_pred ---HHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhh-hhhccccCCCc
Q 039934 222 ---EERVKGIVKEAVEIEREFVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWM-ELISLQGKTNF 297 (329)
Q Consensus 222 ---~~~i~~~~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~-~~~~~~~~~nF 297 (329)
.++|++++.+||++|++|+.++++.+++|||.+++++||+|+||+||.+||++|+|+++||+||| +.++..+++||
T Consensus 251 ~e~~~~v~~l~~eav~~E~~~~~~~l~~~~~Gln~~~~~~yi~y~an~rL~~lG~~~~y~~~np~pw~~~~~~~~~~~nF 330 (346)
T 1syy_A 251 PELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETIDLNKEKNF 330 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCSCTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHHHhCcCCCCCC
Confidence 57899999999999999999989889999999999999999999999999999999999999999 55566677899
Q ss_pred cccccccccccccc
Q 039934 298 FEKRVGEYQKASVM 311 (329)
Q Consensus 298 Fe~~~~~Y~~~~~~ 311 (329)
||+++++|+||+++
T Consensus 331 Fe~~~~~Y~~~~~~ 344 (346)
T 1syy_A 331 FETRVIEYQHAASL 344 (346)
T ss_dssp --------------
T ss_pred CcCCCccccccccC
Confidence 99999999998764
No 7
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase, epstein-BARR virus, R2 subunit; 1.68A {Human herpesvirus 4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A 4a5i_A 4a5j_A
Probab=100.00 E-value=2.8e-79 Score=574.00 Aligned_cols=300 Identities=26% Similarity=0.433 Sum_probs=251.6
Q ss_pred CCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 039934 3 SIPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENL 82 (329)
Q Consensus 3 ~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l 82 (329)
...-+++|++|+.|+. +|++||++|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++
T Consensus 12 ~~~~~~~~~~~~~r~~-~p~~yp~~~~lykk~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~~~~vl~~~~~~D~iv~~nl 90 (324)
T 4a58_A 12 STSLYKKAGSAMSKLL-YVRDHEGFACLTVETHRNRWFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNFNI 90 (324)
T ss_dssp -------------CCS-CCCCCHHHHHHHHHHHHHCCCGGGCCCHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhccCHHhhc-CCccCHHHHHHHHHHHHcCCChHhcCHhhhHHHHHhCCHHHHHHHHHHHHHHHHhHHHHHhhH
Confidence 4456899999999987 899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHH
Q 039934 83 AARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI-KNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERL 161 (329)
Q Consensus 83 ~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~l 161 (329)
. .+++.++.||+++|+++|+++|+||+++||+|+++++ .||.++.++|+++.++|.|++|++|+.+++++..++.+++
T Consensus 91 ~-~l~~~i~~pE~~~~l~~q~~~E~iHs~sYs~il~tl~~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~l 169 (324)
T 4a58_A 91 D-ELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMTDEALQAKISWLRDKVAAAVTLPEKI 169 (324)
T ss_dssp H-HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHTCGGGHHHHHCCCCCHHHCSSHHHHH
T ss_pred H-HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCchhHHHHH
Confidence 6 7999999999999999999999999999999999997 4788999999999999999999999999998777899999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHH
Q 039934 162 IAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRN---KLSEERVKGIVKEAVEIERE 238 (329)
Q Consensus 162 v~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~---~~~~~~i~~~~~eav~~E~~ 238 (329)
++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.+ ++..++|++++++||++|++
T Consensus 170 va~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~p~~~~v~~i~~eave~E~~ 249 (324)
T 4a58_A 170 LVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLHTRAASLLYNSMTAKADRPRATWIQELFRTAVEVETA 249 (324)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999874 67789999999999999999
Q ss_pred hhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC----CCchhhhhhccccCCCcccccccccccc
Q 039934 239 FVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVT----NPFDWMELISLQGKTNFFEKRVGEYQKA 308 (329)
Q Consensus 239 ~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~----nP~~w~~~~~~~~~~nFFe~~~~~Y~~~ 308 (329)
|++++++ ++.|||.+++++||+|+||+||.+||++|+|+++ ||++|+. ..+++||||+||++|+|+
T Consensus 250 ~~~~~~~-~~~~ln~~~~~~Yi~y~An~~L~~LG~~~~y~~~~p~~np~~~~~---~~~~~nFFe~r~~~Y~k~ 319 (324)
T 4a58_A 250 FIEARGE-GVTLVDVRAIKQFLEATADRILGDIGQAPLYGTPPPKDCPLTYMT---SIKQTNFFEQESSDYTML 319 (324)
T ss_dssp HHHHHST-TCTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCC------------------------------
T ss_pred HHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcchhhc---cCccCCCCCCchhhccch
Confidence 9999997 6789999999999999999999999999999864 6778886 357999999999999975
No 8
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=100.00 E-value=8.3e-79 Score=568.20 Aligned_cols=285 Identities=64% Similarity=1.155 Sum_probs=270.9
Q ss_pred CCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 039934 3 SIPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENL 82 (329)
Q Consensus 3 ~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l 82 (329)
.+++|+||++|+.|++++|++|||+|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++
T Consensus 26 ~~~~e~ll~~n~~r~~~~p~ky~~~~~ly~k~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~~l 105 (311)
T 2o1z_A 26 KEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENL 105 (311)
T ss_dssp TGGGCGGGSCCCSCCSSCSCSCHHHHHHHHHHHHTCCCGGGCCCHHHHHHHHHSCHHHHHHHHHHHHHHHHC-------C
T ss_pred hhhhCchhcCCCcccccCCCCcHHHHHHHHHHHHcCCcHhhcchhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHH
Q 039934 83 AARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLI 162 (329)
Q Consensus 83 ~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv 162 (329)
++.+++.++.||+++++++|+++|+||+++||+++++++.||.+++++|+++.++|.+++|++|+.++++++++++++++
T Consensus 106 ~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~lv 185 (311)
T 2o1z_A 106 ASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNSFAERIV 185 (311)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTSHHHHHHHHHHHHHSSTTSCHHHHHH
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCccHHHHHHH
Confidence 88899999999999999999999999999999999999889999999999999999999999999999987778999999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhHh
Q 039934 163 AFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCD 242 (329)
Q Consensus 163 ~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~ 242 (329)
+++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++.+||++|++|+.+
T Consensus 186 a~~~lEGi~fysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~i~~l~~eave~E~~~~~~ 265 (311)
T 2o1z_A 186 ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICE 265 (311)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHTTBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhhh
Q 039934 243 ALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWME 287 (329)
Q Consensus 243 ~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~ 287 (329)
+++.+++|+|.+.+++||+|+||++|++||++|+|+++||+|||+
T Consensus 266 ~~~~~~~Gl~~~~~~~yi~y~an~~L~~LG~~~~y~~~nP~~wm~ 310 (311)
T 2o1z_A 266 SLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIFHAKNPFNWMD 310 (311)
T ss_dssp TBCCTTTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCCCTTTT
T ss_pred HccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchhc
Confidence 998899999999999999999999999999999999999999997
No 9
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=1.4e-78 Score=575.94 Aligned_cols=306 Identities=22% Similarity=0.383 Sum_probs=267.2
Q ss_pred CCCCCCCCCCCC-ccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039934 5 PEEPLLTPNPDR-FCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLA 83 (329)
Q Consensus 5 ~~e~il~~~~~~-~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~ 83 (329)
.+|+||+||+.+ .+++|++|||+|++|+++.++||.|+|||+++|+.+|++||+.||++++++|++|+++|++|++++
T Consensus 18 ~~~~i~~~~~~~~~n~~~~~y~~~~~ly~~~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~l- 96 (346)
T 2rcc_A 18 ASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYS- 96 (346)
T ss_dssp SCSCSBSCCCCSCCCTTSCSBTTHHHHHHHHHHTCCCGGGSCCHHHHHHGGGSCHHHHHHHHHHHHHHHHTTTTCCCHH-
T ss_pred ccCCCcCCCCCcccccCCCCCHHHHHHHHHHHHcCCChhhcchhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 689999999986 469999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhc------CChhH
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWID------GSETF 157 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~------~~~~~ 157 (329)
+.+++.++.||+++|+++|+++|+||+++||+|++++ .+|+++.++|+++.++|.|++|++|+.++++ ++.++
T Consensus 97 ~~l~~~~~~~e~~~~~~~q~~~E~iHs~sYs~il~tl-~~~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~ 175 (346)
T 2rcc_A 97 MRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSL-VPKATQDEIFEYWKHDDVLKERNEFIIDGYEKFVDNPTPKTF 175 (346)
T ss_dssp HHHHTTBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhhHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcCCChHHH
Confidence 8899999999999999999999999999999999999 6888999999999999999999999999885 24579
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC-------HHHHHHHHH
Q 039934 158 AERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS-------EERVKGIVK 230 (329)
Q Consensus 158 ~~~lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~-------~~~i~~~~~ 230 (329)
++++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+.+ .++|++++.
T Consensus 176 ~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~~~e~~~~v~~l~~ 255 (346)
T 2rcc_A 176 LESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLM 255 (346)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCChhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987654 358999999
Q ss_pred HHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC--CCCCCchhhhhhc-c-ccCCCcccccccccc
Q 039934 231 EAVEIEREFVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVY--GVTNPFDWMELIS-L-QGKTNFFEKRVGEYQ 306 (329)
Q Consensus 231 eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y--~~~nP~~w~~~~~-~-~~~~nFFe~~~~~Y~ 306 (329)
+||++|++|+.++++.+++|+|.+++++||+|+||+||.+||++|+| +..||+|||+.+. . .+++||||+++++|+
T Consensus 256 eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~f~~~~~nP~~w~~~~~~~~~~~~nFFe~~~~~Y~ 335 (346)
T 2rcc_A 256 KAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPEIKHNPMKWIRAYEDVNSGKSDFFEQKSRQYA 335 (346)
T ss_dssp HHHHHHHHHHHHHTTTCSTTCCHHHHHHHHHHHHHHHHHHTTCCCSCTTCCSCSCTTC----------------------
T ss_pred HHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhccCccccCCCcCCccccc
Confidence 99999999999999888999999999999999999999999999999 5799999997654 4 568999999999999
Q ss_pred cccccc
Q 039934 307 KASVMS 312 (329)
Q Consensus 307 ~~~~~~ 312 (329)
+++++.
T Consensus 336 ~~~~~~ 341 (346)
T 2rcc_A 336 KVSADN 341 (346)
T ss_dssp ------
T ss_pred cccCcc
Confidence 987654
No 10
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Probab=100.00 E-value=4.7e-78 Score=577.53 Aligned_cols=309 Identities=22% Similarity=0.340 Sum_probs=264.8
Q ss_pred CCCCCCCCCCCCCCc-cccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 039934 3 SIPEEPLLTPNPDRF-CMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLEN 81 (329)
Q Consensus 3 ~~~~e~il~~~~~~~-~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~ 81 (329)
+.++|+||+||+.++ .+.|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+++|++|+++
T Consensus 11 ~~~~~~~~~g~~~n~~r~~~~~y~~~~~lykk~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~Dsiv~~~ 90 (375)
T 1mxr_A 11 DQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRS 90 (375)
T ss_dssp CTTSSCSBSSSCCCSCCCSCCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCcCCCCCChhhcCCcccHHHHHHHHHHHhcCCCchhcchhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999998543 4558999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC--------
Q 039934 82 LAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG-------- 153 (329)
Q Consensus 82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~-------- 153 (329)
+.+.+++.++.||+++|++.|+++|+||+++||+|+++++.||+ ++|+++.++|.|++|++|+.+++++
T Consensus 91 ~~~~~~~~v~~pE~~~~l~~~~~~E~iHs~sYs~il~tl~~~~~---e~f~~i~~~p~i~~Ka~~i~~~y~~~~~~~~~~ 167 (375)
T 1mxr_A 91 PNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEQIQKRAEGISSYYDELIEMTSYW 167 (375)
T ss_dssp HHHHTGGGBCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHH---HHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHhCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99899999999999999999999999999999999999988876 5999999999999999999998853
Q ss_pred ----------------------ChhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHH
Q 039934 154 ----------------------SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 211 (329)
Q Consensus 154 ----------------------~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~ 211 (329)
++++++++++++++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~G~~~~i~lI~RDE~lH~~~~~~ 247 (375)
T 1mxr_A 168 HLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQH 247 (375)
T ss_dssp HHHCSEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1368899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcc--C---------CHHHHHHHHHHHHHHHHHhhHhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCC-
Q 039934 212 LYSLLRNK--L---------SEERVKGIVKEAVEIEREFVCDALP-CALVGMNGALMSQYIEFVADRLLGALGCGKVYG- 278 (329)
Q Consensus 212 l~~~l~~~--~---------~~~~i~~~~~eav~~E~~~~~~~~~-~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~- 278 (329)
+++.++.+ . ..++|++++++||++|++|++++++ ++++||+.+.+++||+|+||+||.+||++|+|+
T Consensus 248 l~~~l~~~~e~p~~~~~~~~~~~~i~~l~~eave~E~~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~rL~~LG~~~~y~~ 327 (375)
T 1mxr_A 248 MLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQT 327 (375)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHHHHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHHHhcccCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999873 2 2467999999999999999999885 578999999999999999999999999999997
Q ss_pred CCCCchhhhhhcc--ccCCCcccccccccccccccccC
Q 039934 279 VTNPFDWMELISL--QGKTNFFEKRVGEYQKASVMSSL 314 (329)
Q Consensus 279 ~~nP~~w~~~~~~--~~~~nFFe~~~~~Y~~~~~~~~~ 314 (329)
+.||+|||+.+.. ..++||||+++++|++|+++.+.
T Consensus 328 ~~nP~~w~~~~~~~~~~~~nFFE~~~t~Y~~~~~~~~~ 365 (375)
T 1mxr_A 328 RSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEV 365 (375)
T ss_dssp CCCSCGGGGGTC--------------------------
T ss_pred CCCCHHHHHHHHhhcccccCCCccCcchhhhccccccC
Confidence 5999999987532 34689999999999999766343
No 11
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=100.00 E-value=1.8e-75 Score=553.20 Aligned_cols=306 Identities=22% Similarity=0.297 Sum_probs=257.2
Q ss_pred CCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 039934 10 LTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKE 89 (329)
Q Consensus 10 l~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~ 89 (329)
......+.+++|++|||.+++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++++.+++.
T Consensus 22 ~~~~~~~inwn~i~y~~~~~~ykk~~~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~vl~f~~~~Dsiv~~~~~~~~~~~ 101 (350)
T 4dr0_A 22 MTKIYDAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEH 101 (350)
T ss_dssp CCCCCCCSCSSSCSSSSHHHHHHHHHHTCCCGGGSCCGGGHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccccccCCCCcccHHHHHHHHHHHHcCCChhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 34456688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCh-----hHHHHHHH
Q 039934 90 VQVSEARAFYGFQIAIEN-IHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSE-----TFAERLIA 163 (329)
Q Consensus 90 ~~~~E~~~~~~~q~~~E~-iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~-----~~~~~lv~ 163 (329)
++.||+++|+++|+++|+ ||+++||+|+++++ +++++.++|+++.++|.|++|++|+.+++++.. ++++++|+
T Consensus 102 v~~pE~~~~~~~q~~~E~aiHs~sYs~il~tl~-~~~e~~~~f~~~~~~p~l~~Ka~~i~~~y~~~~~~~~~~~~~~lva 180 (350)
T 4dr0_A 102 VDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLA-PTETINEVFEWVKQNKYLQKKAQMIVGLYKAIQKDDEISLFKAMVA 180 (350)
T ss_dssp SCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHS-CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 999999999999999999 99999999999996 677889999999999999999999999997533 58999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHH-------HHHHHHHHHHHHH
Q 039934 164 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEE-------RVKGIVKEAVEIE 236 (329)
Q Consensus 164 ~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~-------~i~~~~~eav~~E 236 (329)
++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++++++ +|++++++||++|
T Consensus 181 ~~~lEGi~FysgF~~~~~l~~~g~m~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~e~~~e~~~~i~~l~~eave~E 260 (350)
T 4dr0_A 181 SVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENE 260 (350)
T ss_dssp HHHHHHTTTHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888754 4789999999999
Q ss_pred HHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC--CCCchhhhhhccccC-CCccccccccccccccccc
Q 039934 237 REFVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGV--TNPFDWMELISLQGK-TNFFEKRVGEYQKASVMSS 313 (329)
Q Consensus 237 ~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~--~nP~~w~~~~~~~~~-~nFFe~~~~~Y~~~~~~~~ 313 (329)
++|++++++ .+|++. ++++||+|+||+||.+||++|+|++ +||+ ||+.++..++ +||||+|+++|+||++...
T Consensus 261 ~~~~~~~~~--~iGl~~-~~~~Yi~y~An~~L~~LG~~~~y~~~~~nP~-~~~~~~~~~k~~nFFE~r~t~Y~k~~~~~~ 336 (350)
T 4dr0_A 261 LEYTEDLYD--QVGLSH-DVKKFIRYNANKALMNLGFDPYFEEEDINPI-VLNGLNTKTKSHDFFSMKGNGYKKATVEPL 336 (350)
T ss_dssp HHHHHHHHG--GGTCHH-HHHHHHHHHHHHHHHHTTCCCCSCCCCCCHH-HHHTC-------------------------
T ss_pred HHHHHHHHh--cCCcHH-HHHHHHHHHHHHHHHHcCCCCCCCCCCCCch-HHHhcccccCcCCCCcCchhhhhhcccccC
Confidence 999999873 489985 5999999999999999999999985 6898 7776665544 5999999999999976533
Q ss_pred CCCCCCCccccc
Q 039934 314 LNGNGGNHVFKM 325 (329)
Q Consensus 314 ~~~~~~~~~~~~ 325 (329)
. ++.+.|
T Consensus 337 ~-----d~d~~f 343 (350)
T 4dr0_A 337 K-----DDDFYF 343 (350)
T ss_dssp ------------
T ss_pred C-----ccceec
Confidence 2 567777
No 12
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=100.00 E-value=8.1e-75 Score=543.70 Aligned_cols=295 Identities=19% Similarity=0.258 Sum_probs=253.9
Q ss_pred CCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCh
Q 039934 13 NPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQV 92 (329)
Q Consensus 13 ~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~ 92 (329)
.....+++|++||+.|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+++|++|++++.+.+++.++.
T Consensus 5 ~~~~inwn~i~y~~~~~~y~~~~~~fW~peEi~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~ 84 (319)
T 3n37_A 5 RISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALT 84 (319)
T ss_dssp CCCCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCSS
T ss_pred ccccccCCCcccHHHHHHHHHHHHcCCCHHhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 039934 93 SEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFF 172 (329)
Q Consensus 93 ~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f 172 (329)
||+++|+++|+++|+||+++||+|+++++. +.++.++|+++.++|.|++|++|+.++++++ ++++++++++++||++|
T Consensus 85 pe~~~~~~~q~~~E~iHs~sYs~il~tl~~-~~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~-~~~~~~va~~~lEgi~F 162 (319)
T 3n37_A 85 PHEEAVLSNISFMEAVHARSYSSIFSTLCQ-TKDVDAAYAWSEENAPLQRKAQIIQQHYRGD-DPLKKKIASVFLESFLF 162 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHhhCHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999976 4567899999999999999999999999865 56899999999999999
Q ss_pred HhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHH-------HHHHHHHHHHHHHHHhhHhhcC
Q 039934 173 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEE-------RVKGIVKEAVEIEREFVCDALP 245 (329)
Q Consensus 173 ~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~-------~i~~~~~eav~~E~~~~~~~~~ 245 (329)
||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.++++++ +|++++++||++|++|+++++
T Consensus 163 ys~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~~~~~~~~~~~~e~~~~i~~l~~eave~E~~~~~~~~- 241 (319)
T 3n37_A 163 YSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELY- 241 (319)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999988754 489999999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC----CCCchhhhhhcc--ccCCCccccccccccccccccc
Q 039934 246 CALVGMNGALMSQYIEFVADRLLGALGCGKVYGV----TNPFDWMELISL--QGKTNFFEKRVGEYQKASVMSS 313 (329)
Q Consensus 246 ~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~----~nP~~w~~~~~~--~~~~nFFe~~~~~Y~~~~~~~~ 313 (329)
+++|++.+ +++||+|+||+||.+||++|+|++ +||++|+ .++. .+++||||+|+++|++|++..-
T Consensus 242 -~~iGl~~~-~~~yi~y~An~~L~~lG~~~~f~~~~~~~nP~~~~-~~~~~~~~~~nFFe~r~~~Y~~~~~~~~ 312 (319)
T 3n37_A 242 -AETPWADD-VKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILA-ALSPNADENHDFFSGSGSSYVMGKAVET 312 (319)
T ss_dssp -TTSSCHHH-HHHHHHHHHHHHHHHTTCCCCSCGGGCCCCHHHHH-HHCC------------------------
T ss_pred -hccCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcccHH-hhccCccccCCCCCCChhhhhcCCCccc
Confidence 67899765 999999999999999999999986 5666655 3444 3789999999999999876533
No 13
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A
Probab=100.00 E-value=2.7e-74 Score=541.95 Aligned_cols=293 Identities=20% Similarity=0.296 Sum_probs=252.0
Q ss_pred CCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHH
Q 039934 15 DRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSE 94 (329)
Q Consensus 15 ~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E 94 (329)
+..+++|++||+.|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++.+.+++.++.||
T Consensus 17 ~~inwn~i~y~~~~~~y~~~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~pE 96 (329)
T 3dhz_A 17 KAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMH 96 (329)
T ss_dssp CCCCTTSCSSHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHTGGGCSSHH
T ss_pred ccccCCCcccHHHHHHHHHHHHcCCCHhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 039934 95 ARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSG 174 (329)
Q Consensus 95 ~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~s 174 (329)
+++|+++|+++|+||+++||+|+++++. +.++.++|+++.++|.|++|++|+.++++++ ++++++++++++||++|||
T Consensus 97 ~~~~~~~q~~~E~iHs~sYs~il~tl~~-~~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~-~~~~~~va~~~lEGi~Fys 174 (329)
T 3dhz_A 97 EEAVYTNIAFMESVHAKSYSNIFMTLAS-TPQINEAFRWSEENENLQRKAKIIMSYYNGD-DPLKKKVASTLLESFLFYS 174 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHhhCHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999976 4567889999999999999999999999865 5689999999999999999
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHH-------HHHHHHHHHHHHHHHhhHhhcCCC
Q 039934 175 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEE-------RVKGIVKEAVEIEREFVCDALPCA 247 (329)
Q Consensus 175 ~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~-------~i~~~~~eav~~E~~~~~~~~~~~ 247 (329)
||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++++++ ++++++++||++|++|+++++ +
T Consensus 175 gF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~e~~~~~~~l~~eave~E~~~~~~~~--~ 252 (329)
T 3dhz_A 175 GFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIY--D 252 (329)
T ss_dssp HHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 9999999999999999999999999999999999999999999988754 488999999999999999886 6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC----CCCchhhhhhcc--ccCCCccccccccccccccccc
Q 039934 248 LVGMNGALMSQYIEFVADRLLGALGCGKVYGV----TNPFDWMELISL--QGKTNFFEKRVGEYQKASVMSS 313 (329)
Q Consensus 248 ~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~----~nP~~w~~~~~~--~~~~nFFe~~~~~Y~~~~~~~~ 313 (329)
++|++.+ +++||+|+||+||.+||++|+|++ +||++|+ .++. .+++||||+|+++|++|++..-
T Consensus 253 ~iGl~~~-~~~yi~y~An~~L~~lG~~~~y~~~~~~~nP~~~~-~~~~~~~~~~nFFe~r~t~Y~~~~~~~~ 322 (329)
T 3dhz_A 253 DLGWTED-VKRFLRYNANKALNNLGYEGLFPTDETKVSPAILS-SLSPNADENHDFFSGSGSSYVIGKAEDT 322 (329)
T ss_dssp TTTCHHH-HHHHHHHHHHHHHHHTTCCCSSCGGGCCCCHHHHH-HHC-------------------------
T ss_pred ccCchHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcccHH-HhccCccccCCCCCCChhhhhcCCcccc
Confidence 7899765 999999999999999999999986 5666655 3444 4789999999999999976543
No 14
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=100.00 E-value=1.5e-67 Score=489.37 Aligned_cols=265 Identities=21% Similarity=0.308 Sum_probs=249.4
Q ss_pred CCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChH
Q 039934 14 PDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVS 93 (329)
Q Consensus 14 ~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~ 93 (329)
.++.+++|++||+.|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++.+.+++.++.|
T Consensus 15 ~~~inwn~i~y~~~~~~y~k~~~~fW~peEI~ls~D~~dw~~Ls~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~p 94 (296)
T 3mjo_A 15 VKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETM 94 (296)
T ss_dssp CCCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCSSH
T ss_pred cccccCCCCccHHHHHHHHHHHHcCCCHHHcChhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 039934 94 EARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFS 173 (329)
Q Consensus 94 E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~ 173 (329)
|+++|+++|+++|+||+++||+++++++.+ .++.++|+++.++|.+++|++|+.++++++ ++++++++++++||++||
T Consensus 95 e~~~~~~~q~~~E~iHs~sYs~il~tl~~~-~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~-~~~~~~va~~~lEGi~Fy 172 (296)
T 3mjo_A 95 HEEAVYTNIAFMESVHAKSYSNIFMTLAST-PQINEAFRWSEENENLQRKAKIIMSYYNGD-DPLKKKVASTLLESFLFY 172 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHCHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHhcCHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999764 467899999999999999999999999865 568999999999999999
Q ss_pred hHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHH-------HHHHHHHHHHHHHHHhhHhhcCC
Q 039934 174 GSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEE-------RVKGIVKEAVEIEREFVCDALPC 246 (329)
Q Consensus 174 s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~-------~i~~~~~eav~~E~~~~~~~~~~ 246 (329)
|||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.++++++ ++++++++||++|++|+++++
T Consensus 173 sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~~~e~~~~v~~l~~eave~E~~~~~~~~-- 250 (296)
T 3mjo_A 173 SGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIY-- 250 (296)
T ss_dssp HHTHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999999999999999999999999999999999999999999998754 488999999999999999886
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC----CCCc
Q 039934 247 ALVGMNGALMSQYIEFVADRLLGALGCGKVYGV----TNPF 283 (329)
Q Consensus 247 ~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~----~nP~ 283 (329)
+++|++.+ +++||+|+||+||.+||++|+|++ .||+
T Consensus 251 ~~iGl~~~-~~~yi~y~An~~L~~LG~~~~y~~~~~~~~p~ 290 (296)
T 3mjo_A 251 DDLGWTED-VKRFLRYNANKALNNLGYEGLFPTDETKVSPA 290 (296)
T ss_dssp TTTTCHHH-HHHHHHHHHHHHHHHTTCCCSSCGGGCCCCHH
T ss_pred hccCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCchhhcCHH
Confidence 68899765 999999999999999999999974 4676
No 15
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A*
Probab=100.00 E-value=2.5e-61 Score=452.13 Aligned_cols=264 Identities=17% Similarity=0.275 Sum_probs=239.1
Q ss_pred CCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039934 4 IPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLA 83 (329)
Q Consensus 4 ~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~ 83 (329)
-..|++|.+|+.||+++|++ +|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++.
T Consensus 12 ~~~~~~l~~~~~~~~~~p~~------ly~k~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~vL~~ft~~D~iv~~nl~ 85 (323)
T 3ee4_A 12 RTRSGSLAAGGLNWASLPLK------LFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQ 85 (323)
T ss_dssp CCCCGGGSTTCCCTTSHHHH------HHHHHHHTCCCGGGSCCTTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccchhccCCCCCcccchHH------HHHHHHHcCCChHhcChhhhHHHHHHCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35689999999999999985 999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHH-HHhh----c--C
Q 039934 84 ARFMKEVQV---SEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWA-LNWI----D--G 153 (329)
Q Consensus 84 ~~~~~~~~~---~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~-~~~~----~--~ 153 (329)
.+++.++. ||+++|+++|+++|+||+++||+++++++.+++ +|+++.++|.+++|..+. .+.+ + +
T Consensus 86 -~~~~~v~~e~~pE~~~~l~~q~~~EaiHs~sYs~il~tl~~~~~----~f~~~~~~p~lr~k~~~~l~~~~~~~~~~~~ 160 (323)
T 3ee4_A 86 -PFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED----LHRYLDDLPAYRQIFYAELPECLNALSADPS 160 (323)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSC----CGGGGTTCHHHHHHHHTHHHHHHHHHHHCCC
T ss_pred -HHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHcCHHHHHHHHHHHHHHHHhhccCCC
Confidence 68887764 999999999999999999999999999987763 899999999999886422 1212 1 2
Q ss_pred ChhHHHHHHHHH-HHHHHHhHhHHHHHH-HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC------HHHH
Q 039934 154 SETFAERLIAFA-CVEGIFFSGSFCAIF-WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS------EERV 225 (329)
Q Consensus 154 ~~~~~~~lv~~~-~lEgi~f~s~F~~~~-~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~------~~~i 225 (329)
+.++++++++++ ++||++|||||++++ +|+++|+|||++++|++|+|||++|+.|++.+++.++++.| .++|
T Consensus 161 ~~~~~~~lvaf~~~lEGi~FysgF~~~~~~l~~rg~m~G~~~~i~lI~RDE~~H~~f~~~l~~~l~~e~p~~~~~~~~~v 240 (323)
T 3ee4_A 161 PAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRM 240 (323)
T ss_dssp HHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhhHHHHHHH
Confidence 345899999995 899999999997554 79999999999999999999999999999999999998876 3789
Q ss_pred HHHHHHHHHHHHHhhHhhcCCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 039934 226 KGIVKEAVEIEREFVCDALPCALV-GMNGALMSQYIEFVADRLLGALGCGKVYGV 279 (329)
Q Consensus 226 ~~~~~eav~~E~~~~~~~~~~~~~-Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~ 279 (329)
++++.+||++ ++|+.+.++.+++ |||.+++++||+|+||+||.+||+++.|++
T Consensus 241 ~el~~eave~-~e~~~~~~~~~~~lGl~~~~~~~Yi~y~AnrrL~~LG~~~~f~~ 294 (323)
T 3ee4_A 241 NELIPLALRL-IEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPV 294 (323)
T ss_dssp HHHHHHHHHH-HHHHHHTTTTCCSTTCCHHHHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHH-HHHHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999999 9999988877775 999999999999999999999999999974
No 16
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=98.36 E-value=5.3e-05 Score=74.06 Aligned_cols=220 Identities=13% Similarity=0.035 Sum_probs=131.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH-
Q 039934 54 ESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFR- 132 (329)
Q Consensus 54 ~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~- 132 (329)
..+++.-+.+++..++.+..++-...... ..+...++++.++.+.++|+.+|.+|+..-.++...+......- .-|+
T Consensus 82 ~~~dprw~~~lk~~~~~~~~~Ey~a~~~~-a~~~r~ap~~~~rnaaa~q~lDElRHaQ~~~~~~~el~~~~~~~-~~f~~ 159 (491)
T 2inc_A 82 DRADPGWVSTMQLHFGAIALEEYAASTAE-ARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKW-DWAHK 159 (491)
T ss_dssp GTSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGCGGG-GHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-ccccH
Confidence 45777777777777777777775544444 35788999999999999999999999999777777654322110 0122
Q ss_pred -HHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHH
Q 039934 133 -AFETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 210 (329)
Q Consensus 133 -~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~ 210 (329)
...++|..+.=-..+.+..-+ .+..+.+++.. +.|+++.--.|..+...+..+-=+.+..++..|+.||++|..+|.
T Consensus 160 ~~~~~~p~~~~~R~~~ed~~~t-~D~~E~~ialnlv~E~~~tnll~~~f~~~Aa~nGD~lt~~v~~siq~DEaRH~~~g~ 238 (491)
T 2inc_A 160 AIHTNEWAAIAARSFFDDMMMT-RDSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQGG 238 (491)
T ss_dssp GGGSCCHHHHHHHHHHHHHTTS-SCHHHHHHHCCCCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHhhcCcccHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 234566554433333333222 23567777765 569865443343333444332224488999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHH----HHHHHHHHh----hHhhcCCCCCCCC-HHHHHHHHHHHHHHHHHHcCCCCC
Q 039934 211 LLYSLLRNKLSEERVKGIVK----EAVEIEREF----VCDALPCALVGMN-GALMSQYIEFVADRLLGALGCGKV 276 (329)
Q Consensus 211 ~l~~~l~~~~~~~~i~~~~~----eav~~E~~~----~~~~~~~~~~Gl~-~~~~~~yi~y~an~~l~~lG~~~~ 276 (329)
.+++.+......+...+-++ .+...=..+ .++..+.+.---+ ++.+.+||.--.-++|..+|++.+
T Consensus 239 ~ll~~ll~d~~~~~~Q~wld~w~wra~~a~~~l~g~~~dy~~p~~~r~~s~~e~~~~Wv~~~~~~~L~~lGL~~P 313 (491)
T 2inc_A 239 PSLKILVENGKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKP 313 (491)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTSCGGGCCSCHHHHHHHHTHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHHHHhhhhHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99998876533222232222 222211111 1222221000111 455566555545567999999765
No 17
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Probab=98.10 E-value=0.00033 Score=68.66 Aligned_cols=164 Identities=12% Similarity=-0.016 Sum_probs=109.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcHHHHH
Q 039934 53 WESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI---KNSDEKSR 129 (329)
Q Consensus 53 ~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~---~d~~e~~~ 129 (329)
+..+++.-+++++..++.++.++-.-.... ..+....+.+.++.+..+|+.+|.+|+..-.++...+. .||.--..
T Consensus 78 ~~~~dprW~~~Lk~~l~av~~~EY~a~~~~-a~~~r~ap~~~~rnaaa~qalDElRHaQ~~~~l~k~~~~~~~dp~Gfd~ 156 (512)
T 1mty_D 78 GVRVHPKWNETMKVVSNFLEVGEYNAIAAT-GMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHND 156 (512)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTTTT
T ss_pred cccCCHHHHHHHHHHHcccCHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccCCCH
Confidence 456999999999999999988886655544 45788999999999999999999999998444333332 23211000
Q ss_pred HHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHH-hcCCCcchHHHHHHHHhhhhhHHH
Q 039934 130 LFRAFETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCD 207 (329)
Q Consensus 130 ~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~-~~~~l~g~~~~i~~I~rDE~~H~~ 207 (329)
.-.++.++|..+-=-+.+.+...+ .+..+.+++.. +.|.++.--.|..+...+ ..|=+. +..++.-|+.||++|..
T Consensus 157 ~r~~~~~~p~~q~~R~~fe~~~~t-~D~~E~~valn~v~E~~~tnll~~~~~~~Aa~nGD~~-tptv~~siqsDEaRH~~ 234 (512)
T 1mty_D 157 ARRTRTIGPLWKGMKRVFSDGFIS-GDAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEI-TPTVFLSIETDELRHMA 234 (512)
T ss_dssp HHHHGGGSSHHHHHHHHHTHHHHS-SCHHHHHHHHTTTHHHHTHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCchhhhHHHHHHHhhc-CChHHHhhhhhhhHHHHhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHH
Confidence 122445566554322222222112 23567777765 568875444444333333 344433 88899999999999999
Q ss_pred HHHHHHHHHHcc
Q 039934 208 FACLLYSLLRNK 219 (329)
Q Consensus 208 ~~~~l~~~l~~~ 219 (329)
.|..+++.+.+.
T Consensus 235 ~g~~ll~~Lled 246 (512)
T 1mty_D 235 NGYQTVVSIAND 246 (512)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHcC
Confidence 999999999864
No 18
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A
Probab=97.89 E-value=0.00047 Score=67.23 Aligned_cols=218 Identities=16% Similarity=0.068 Sum_probs=128.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 039934 53 WESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFR 132 (329)
Q Consensus 53 ~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~ 132 (329)
+.++++.-..+++..++.++.++-..... ...+.+.++.++++.++.+|+.+|.+|+..=.+....+..++..=.....
T Consensus 82 ~~~ldp~W~~~Lk~~~~av~~~Ey~a~~g-~A~~~R~aps~~~rn~~~fQ~~DElRHaQ~q~y~~~~l~~~~~gFd~~~r 160 (500)
T 3ge3_A 82 YENSDPGWISTLKSHYGAIAVGEYAAVTG-EGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWR 160 (500)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGGHHHH
T ss_pred cccCCHHHHHHHHHHhcccchHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccChHHH
Confidence 45688888889999999888888655433 34678899999999999999999999999877777767544321001112
Q ss_pred HHhhcHHHH--HHHHHHHHhhcCChhHHHHHHHHH-HHHHHH---hHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHH
Q 039934 133 AFETVPCVA--KKADWALNWIDGSETFAERLIAFA-CVEGIF---FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHC 206 (329)
Q Consensus 133 ~~~~~~~l~--~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~---f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~ 206 (329)
++. +|.-+ -=-+++.+.+-+ .+.++.+++.. +.|.++ ++++|. ..+..+==..+..++.-|+.||++|.
T Consensus 161 ~~~-d~~W~~~~~R~~fE~~~~t-~Dw~E~~valnlvfEp~~tnll~v~l~---~~Aa~NGD~~tptl~~S~qsDe~Rh~ 235 (500)
T 3ge3_A 161 AYH-SNEWAAIAAKHFFDDIITG-RDAISVAIMLTFSFETGFANMQFLGLA---ADAAEAGDYTFANLISSIQTDESRHA 235 (500)
T ss_dssp GGG-SCCHHHHHHHHHHHHHTTS-SCHHHHHHHTCCCCCCCCHHHHHTHHH---HHHHHTTCHHHHHHHHHHHHHHHHHG
T ss_pred HHh-CchhhhhHHHHHHHHHHcc-CCHHHHHHHHHhhHHHhhhHHHHHHHH---HHHHHcCChhhHHHHHHHHHhHHHHH
Confidence 222 22211 111122233322 23577777764 456542 334443 33322222456778899999999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhh--------HhhcCCCCCCCC-HHHHHHHHHHHHHHHHHHcCCCCC
Q 039934 207 DFACLLYSLLRNKLSEERVKGIVKEAVEIEREFV--------CDALPCALVGMN-GALMSQYIEFVADRLLGALGCGKV 276 (329)
Q Consensus 207 ~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~--------~~~~~~~~~Gl~-~~~~~~yi~y~an~~l~~lG~~~~ 276 (329)
..|..+++.+.+...++.+...++...-.=.+.+ ++..+.+.=-.+ ++-+.++|.---=++|..+|++++
T Consensus 236 ~~g~alv~~lle~~~~~n~q~wld~wfwra~~a~~al~G~~~dY~~p~~~r~~S~~e~~~ewi~~~~~~~L~~~Gl~~P 314 (500)
T 3ge3_A 236 QQGGPALQLLIENGKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEFMYEWIIGQFERSLIDLGLDKP 314 (500)
T ss_dssp GGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSCHHHHHHHHTTTTHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999998876555555554444332222211 221120011122 233444322222347999999886
No 19
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B*
Probab=97.85 E-value=0.0086 Score=55.40 Aligned_cols=209 Identities=12% Similarity=-0.012 Sum_probs=127.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCcHHHHHH
Q 039934 54 ESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSE---MYSLLLETYIKNSDEKSRL 130 (329)
Q Consensus 54 ~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~---sYs~il~~~~~d~~e~~~~ 130 (329)
..+++.-++.++..++.+-..+-...-+. ..+....+.+.++.+..+|+++|.+|+. -|++-+.....+...-...
T Consensus 104 ~~ld~~w~~~l~~~l~p~~~~e~~~~~~~-a~~~r~~~~~~i~n~~~~qa~DelR~aQ~~~y~~~~L~~~~~~~g~~~~~ 182 (322)
T 2inc_B 104 QMLTREWVETLARFYTPARYLFHALQMGS-VYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRE 182 (322)
T ss_dssp GGSCHHHHHHHHHHTTTHHHHHHHHHHHH-HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTSH
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccchHH
Confidence 35777777777777655555443322222 3567788999999999999999999999 7777665554332100011
Q ss_pred HHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHH-HhcCCCcchHHHHHHHHhhhhhHHHH
Q 039934 131 FRAFETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCDF 208 (329)
Q Consensus 131 ~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l-~~~~~l~g~~~~i~~I~rDE~~H~~~ 208 (329)
=..+.++|..+-=-.++.+.+-+ .+.++.+++.. ++|+++----|..+-.. +.+|= ..+..++..+..||++|...
T Consensus 183 k~~w~~~p~wq~~R~~~E~~~~~-~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nGD-~~t~~l~~s~q~D~~Rh~~~ 260 (322)
T 2inc_B 183 RDVWENDPAWQGFRELIEKALIA-WDWGEAFTAINLVTKPAVEEALLQQLGSLAQSEGD-TLLGLLAQAQKRDAERHRRW 260 (322)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTTC-CSHHHHHHHHHTTHHHHHHHHHTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchhHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHCCC-hhHHHHHHHHHHHHHHHHHH
Confidence 22567788766544444444333 34678888876 56998644333333322 23332 45777889999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHH----HHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcC
Q 039934 209 ACLLYSLLRNKLS-EERVKGIV----KEAVEIEREFVCDALPCALVGMNGALMSQYIEFVADRLLGALG 272 (329)
Q Consensus 209 ~~~l~~~l~~~~~-~~~i~~~~----~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG 272 (329)
+..+++.+.+++. .+.+..-+ -.+.+.=..++. ++.. .+ ....-++-....++..||
T Consensus 261 ~~alvk~~~~~~~N~~~lq~wi~~w~~ra~~A~~~l~~-~~~~--~~----~~~~~~~~~~~~~~~~~g 322 (322)
T 2inc_B 261 SSALVKMALEKEGNREVLQKWVAKWEPLADKAIEAYCS-ALPD--GE----NAIVEAKSASRYVRQMMG 322 (322)
T ss_dssp HHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-HSTT--HH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHHHH-HhcC--CC----cHHHHHHHHHHHHHHhcc
Confidence 9999999987633 23333333 333332223322 1111 11 224666667777777776
No 20
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C
Probab=97.74 E-value=0.013 Score=53.69 Aligned_cols=204 Identities=10% Similarity=-0.010 Sum_probs=137.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 039934 55 SLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAF 134 (329)
Q Consensus 55 ~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~ 134 (329)
.||+.-|..+.+.++.++-++-+.+.-+. ..+...|+-|.+..++..+..|.-|...+..++..++.|+++ +....
T Consensus 24 ~mP~~Yr~~L~~ll~~laD~ELi~~~rl~-ew~~~AP~Lee~iALa~ia~DE~GHa~~l~~~a~~lG~d~d~---l~~~~ 99 (311)
T 3pvt_A 24 WMPDAYRKTLIRQIGQHAHSEIVGMLPEG-NWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCARED---IYQKM 99 (311)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTHHHHH-TTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHH---HHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHH
Confidence 38999999999999988877755554443 466788999999999999999999999988888998766542 22211
Q ss_pred hhcHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHhHhHHHHHHHHH-hcCCCcchHHHHHHHHhhhhhHHHHHHHH
Q 039934 135 ETVPCVAKKADWALNWID-GSETFAERLIAFACVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDFACLL 212 (329)
Q Consensus 135 ~~~~~l~~k~~~~~~~~~-~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~-~~~~l~g~~~~i~~I~rDE~~H~~~~~~l 212 (329)
..-. .|. ....+ ...+++..++-..+.. +++..++.. .+.-.+-++.+...|+++|+.|..++...
T Consensus 100 r~~~---~~~---~~lfe~P~~dWad~vvr~~l~D------~~a~~~~~~L~~ss~~plA~~a~ki~kEE~yH~~~g~~w 167 (311)
T 3pvt_A 100 LDGR---MKY---SSIFNYPTLSWADIGVIGWLVD------GAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEA 167 (311)
T ss_dssp HTTS---SCC---CGGGGSCCCSHHHHHHHHHHHH------HHHHHHHHTTTTCSBHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcch---hhh---hhHHhCCCCCHHHHHHHHHHHH------HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 000 01111 2335766655433333 444444332 34556889999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHhhHhhcC--------------CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Q 039934 213 YSLLRNKLSEERVKGIVKEAVEIEREFVCDALP--------------CALVGMNGALMSQYIEFVADRLLGALGCGKV 276 (329)
Q Consensus 213 ~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~~--------------~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~ 276 (329)
++.|... .++.++.+.++++.=--++...|+ .++-+.+.+++.+--.-.....|..+|+.-+
T Consensus 168 v~rL~~g--t~esr~r~Q~Al~~~wp~~~elFg~~~~~s~~~~~~~~~Gi~~~~n~eLR~~w~~~v~~~l~~~gL~~P 243 (311)
T 3pvt_A 168 CMALAQG--SEAQKQMLQDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVP 243 (311)
T ss_dssp HHHHHTS--CHHHHHHHHHHHHHHHHHHHHTTCSCGGGCTTHHHHHHTTSCSSCHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHhC--CHHHHHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9888853 345667777777644444444442 2344456777866445567788999998754
No 21
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Probab=97.62 E-value=0.0071 Score=55.90 Aligned_cols=176 Identities=14% Similarity=-0.033 Sum_probs=107.7
Q ss_pred hHHHHHHHHHH---hCCCCCCc-cCccc------cHHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHH
Q 039934 25 PEIWEMYKKAE---ASFWTAEE-VDLSQ------DIRQW----ESLTADEKHFITHVLAFFAASDGIVLENLA---ARFM 87 (329)
Q Consensus 25 ~~~~~ly~k~~---~~fW~p~e-id~~~------D~~~~----~~L~~~er~~~~~~l~~~~~~d~~v~~~l~---~~~~ 87 (329)
||+.+...... ...|.|++ +|.++ +..+| ++||+.-.-++... .+.-+++. ..+.
T Consensus 20 ~~~~~~~~~hL~p~~~~Wqp~D~lPw~~~~~F~~~~~~~~~~~~~l~d~~~v~lv~~--------~iTEd~LPtY~~~L~ 91 (338)
T 2uw1_A 20 DWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRERAKEIPDDYFVVLVGD--------MITEEALPTYMSMLN 91 (338)
T ss_dssp HHHHHHTGGGSCCGGGCCCGGGGSCCTTSTTHHHHHHHHHHHHTTSCHHHHHHHHHH--------HHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHhhcCCchhcCCCccccchhhhcccccHhhccCCHHHHHHHHHH--------HHhhhcchHHHHHHH
Confidence 44444444433 36899988 77655 56777 46887766654433 23223332 1222
Q ss_pred hhc--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCC--hh
Q 039934 88 KEV--------QVSEARAFYGFQIAIENIHSEMYSLLLETYI-KNSDEKSRLFRAFETVPCVAKKADWALNWIDGS--ET 156 (329)
Q Consensus 88 ~~~--------~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~--~~ 156 (329)
... ..+....|.....++|+.|+.+-..++-.-+ .||... .. .+...+..-++.+ .+
T Consensus 92 ~~fgvrd~~g~~~~~w~~w~~~WtaEEnrHg~aL~~YL~lsgrvDp~~l---E~---------~~~~~i~~Gfd~~~~~~ 159 (338)
T 2uw1_A 92 RCDGIKDETGAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKI---EK---------TIQYLIGSGMDIKSENS 159 (338)
T ss_dssp TSTTTSCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHH---HH---------HHHHHHHHCCCCCCTTC
T ss_pred HHcCcccccCCCcchHHHHhhhHhHHHHHHHHHHHHHHHHhcCCCHHHH---HH---------HHHHHHhCCCCCCCCCC
Confidence 332 2466888999999999999999888887543 366421 11 0112233333321 12
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC
Q 039934 157 FAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS 221 (329)
Q Consensus 157 ~~~~lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~ 221 (329)
.+..++.-.+-|..-+ .++.-+-.+++..-=|.++++...|++||.+|..|...+++.+.+..+
T Consensus 160 p~~~~vy~sfQE~AT~-vsh~n~~r~A~~~gdPvLa~i~~~IA~DE~RH~~~Y~~~v~~~le~dp 223 (338)
T 2uw1_A 160 PYLGFIYTSFQERATF-ISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDP 223 (338)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3455444456677654 344444445444446889999999999999999999999988875544
No 22
>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* 3q14_B 3q2a_B* 3q3m_B* 3q3n_B* 3q3o_B* 3rmk_B* 3ri7_B
Probab=97.26 E-value=0.028 Score=52.01 Aligned_cols=163 Identities=9% Similarity=-0.011 Sum_probs=103.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCcHHHHHH
Q 039934 54 ESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEM---YSLLLETYIKNSDEKSRL 130 (329)
Q Consensus 54 ~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~s---Ys~il~~~~~d~~e~~~~ 130 (329)
..+++.-++.++..++.+...+-...-+ ...+....+.+.++.+..+|+++|-+|+.. +++-+..-..+-+.-..-
T Consensus 108 ~~ld~~w~~~l~~~l~pl~~~e~~a~m~-~a~~~r~~~~~~i~na~~fqa~DelRhaQ~~q~~~~~l~~~~~~~~~~~~~ 186 (327)
T 3ge3_B 108 QMVREGWEHTMARCYSPLRYLFHCLQMS-SAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHE 186 (327)
T ss_dssp GGSCTTHHHHHHHHTTTHHHHHHHHHHH-HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTSH
T ss_pred ccCCHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCCchhHH
Confidence 4577777777777777666665443222 245778889999999999999999999554 666554433210000011
Q ss_pred HHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHH-hcCCCcchHHHHHHHHhhhhhHHHH
Q 039934 131 FRAFETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDF 208 (329)
Q Consensus 131 ~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~-~~~~l~g~~~~i~~I~rDE~~H~~~ 208 (329)
-..+.++|.-+-=-.++.+.+-. .+.++.+++.. ++|+++----|.-+-..+ .+| =..+..++..+..||++|...
T Consensus 187 k~~W~~dp~Wq~~R~~~Ed~~~~-~Dw~E~~vA~nlv~E~l~~~L~~~~~~~~Aa~nG-D~~t~~l~~s~qsD~~Rh~~~ 264 (327)
T 3ge3_B 187 RELWEKEPGWQGLRELMEKQLTA-FDWGEAFVSLNLVVKPMIVESIFKPLQQQAWENN-DTLLPLLIDSQLKDAERHSRW 264 (327)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTTC-CSHHHHHHHHHHTHHHHHHHHTHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCcchHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHHHH
Confidence 22345667655422333333322 24678888875 689875433333333333 333 245778889999999999999
Q ss_pred HHHHHHHHHcc
Q 039934 209 ACLLYSLLRNK 219 (329)
Q Consensus 209 ~~~l~~~l~~~ 219 (329)
+..+++.+.++
T Consensus 265 ~~alvk~ll~~ 275 (327)
T 3ge3_B 265 SKALVKHALEN 275 (327)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHhcC
Confidence 99999999877
No 23
>3u52_C Phenol hydroxylase component PHL; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_C* 2inp_C
Probab=97.23 E-value=0.074 Score=49.29 Aligned_cols=210 Identities=7% Similarity=-0.055 Sum_probs=125.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH-H
Q 039934 53 WESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRL-F 131 (329)
Q Consensus 53 ~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~-~ 131 (329)
+..+++.-++.++..++-+...+-....+. ..+....+.+.++.+..+|+++|-+|+..-+++.-.+...+..-... -
T Consensus 108 ~~~ld~~w~~~l~~~~~plr~~E~ga~~~~-a~~~r~~~~~~i~na~~fqa~DelRhaQ~ls~~~l~l~~~~g~~~~~~k 186 (333)
T 3u52_C 108 LTRLSEETQKQLLRLLVPLRHVELGANMNN-AKIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDESK 186 (333)
T ss_dssp TTTSCHHHHHHHHHHTTTHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHH
T ss_pred cccCCHHHHHHHHHHcchHhHHHHHHHHHH-HHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHH
Confidence 346888888888888877777664443333 45778899999999999999999999997777655553322111111 2
Q ss_pred HHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHH-HHhcC-CCcchHHHHHHHHhh-hhhHHH
Q 039934 132 RAFETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFW-LKKRG-LMPGLTFSNELISRD-EGLHCD 207 (329)
Q Consensus 132 ~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~-l~~~~-~l~g~~~~i~~I~rD-E~~H~~ 207 (329)
..|.++|.-+-=-.++.+.+.. .++++.+++.. ++|+++----|.-+.. .+.+| -+. + ++--++.| |++|..
T Consensus 187 ~~W~~dp~Wq~~R~~~Ed~~~~-~Dw~E~~vA~nlv~E~ll~~L~~~~~~~~aa~~gd~~~--~-~~~s~q~d~~~Rh~~ 262 (333)
T 3u52_C 187 AYWMDDEMWQPMRKLVEDTLVV-DDWFELTLVQNILIDGMMYPLVYDKMDQWFESQGAEDV--S-MLTEFMRDWYKESLR 262 (333)
T ss_dssp HHHHHCTTTHHHHHHHHHHTTC-CCHHHHHHHHHTHHHHHHHHHHHTHHHHHHHTTTCGGG--G-GTSHHHHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcee--h-hhHHHhhhHHHHHHH
Confidence 2355777554422333333322 24678888876 6899865444444433 23333 222 2 44455556 999999
Q ss_pred HHHHHHHHHHccCC--HHHHH----HHHHHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q 039934 208 FACLLYSLLRNKLS--EERVK----GIVKEAVEIEREFVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGK 275 (329)
Q Consensus 208 ~~~~l~~~l~~~~~--~~~i~----~~~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~ 275 (329)
.+..+++.+.++-+ .+.+. +-+..+.+.=..... .. +..+. ..-++-....++..+|+.+
T Consensus 263 ~~~alvk~ll~~~~~N~~~lq~Wi~~W~~ra~~al~pl~~-----~~--~~~~~-~~~~~~~~~~~~~~~gl~~ 328 (333)
T 3u52_C 263 WTNAMMKAVAGESETNRELLQKWIDHWEPQAYEALKPLAE-----AS--VGIDG-LNEARAELSARLKKFELQS 328 (333)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TT--TCHHH-HHHHHHHHHHHHGGGTCCC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hh--cCchH-HHHHHHHHHHHHHHCCCCc
Confidence 99999998886522 12222 222222221111111 11 22222 4557777888999999876
No 24
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.25.1.2 PDB: 1mhz_B
Probab=97.17 E-value=0.028 Score=53.33 Aligned_cols=166 Identities=8% Similarity=-0.096 Sum_probs=108.5
Q ss_pred HHhcCCHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcHH-
Q 039934 52 QWESLTADEK-HFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI---KNSDE- 126 (329)
Q Consensus 52 ~~~~L~~~er-~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~---~d~~e- 126 (329)
.+..|++.-+ +.++..++.+...+-....+.+ .+....+.+.++.+..+|+++|-+|+.--+++...+. .++.+
T Consensus 135 ~~~~ld~~w~~~~l~~~l~p~r~~Eyga~~~~a-~~~r~~~~~~i~na~~fqa~DeLRhaQ~~~~~~~~l~~~~~g~~~~ 213 (395)
T 1mhy_B 135 SIRTIDPYWRDEILNKYFGALLYSEYGLFNAHS-SVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDAS 213 (395)
T ss_dssp GGGGSCHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCC
T ss_pred ccccCCHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 3457999999 9999999999888866555543 5778889999999999999999999999888866552 22210
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHh-hcCChhHHHHHHHHH-HHHHHHhHhHHHHH-HHHHhcCCCcchHHHHHHHHhhhh
Q 039934 127 KSRLFRAFETVPCVAKKADWALNW-IDGSETFAERLIAFA-CVEGIFFSGSFCAI-FWLKKRGLMPGLTFSNELISRDEG 203 (329)
Q Consensus 127 ~~~~~~~~~~~~~l~~k~~~~~~~-~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~-~~l~~~~~l~g~~~~i~~I~rDE~ 203 (329)
...-=..|.++|.-+-=-.++.+. +.. .+.++.+++.. ++|+++----|.-+ -.++..+==.-+..++.-+..||+
T Consensus 214 ~~~~k~~W~~dp~Wq~~R~~~E~~~l~~-~Dw~E~~vA~nlv~E~l~~~L~~~~~~~~~Aa~nGD~~tptl~~s~q~D~~ 292 (395)
T 1mhy_B 214 TDVPKKIWTTDPIYSGARATVQEIWQGV-QDWNEILWAGHAVYDATFGQFARREFFQRLATVYGDTLTPFFTAQSQTYFQ 292 (395)
T ss_dssp SHHHHHHHHHCGGGHHHHHHHHHHHHSC-CCHHHHHHHHHHTHHHHHHHHHHTTTHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhCcchHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 001112344455433222223333 222 23678888876 56998654444444 344433211234445555899999
Q ss_pred hHHHHHHHHHHHHHcc
Q 039934 204 LHCDFACLLYSLLRNK 219 (329)
Q Consensus 204 ~H~~~~~~l~~~l~~~ 219 (329)
+|...+..+++.+.+.
T Consensus 293 Rh~~~~~alvk~lle~ 308 (395)
T 1mhy_B 293 TTRGAIDDLFVYCLAN 308 (395)
T ss_dssp HHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999888743
No 25
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=97.06 E-value=0.046 Score=53.56 Aligned_cols=211 Identities=12% Similarity=0.013 Sum_probs=125.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----cHHH
Q 039934 53 WESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKN-----SDEK 127 (329)
Q Consensus 53 ~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d-----~~e~ 127 (329)
...+++.-++.++..++.+..++-....+. ..+...+..+..+....+|+++|-+|+.--+++...+... ...+
T Consensus 86 ~~~~d~~W~~~Lk~~l~al~~~EYgA~~~~-a~~~r~~~g~~~~na~~fqa~DeLRhAQ~~~~~~~~l~~~~~Gf~d~a~ 164 (511)
T 3u52_A 86 QNISDARYVNALKLFISGISPLEHAAFQGY-SKVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPH 164 (511)
T ss_dssp GGSSCGGGHHHHHHHHHHTHHHHHHHHHHH-HHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHH
T ss_pred cccCCHHHHHHHHHHhccccHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccChhhh
Confidence 345677788888888888888775554444 3577888999999999999999999999887776655321 1111
Q ss_pred HHHHHHHhhcHHH---HHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhh
Q 039934 128 SRLFRAFETVPCV---AKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEG 203 (329)
Q Consensus 128 ~~~~~~~~~~~~l---~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~ 203 (329)
.. .|.- +.| .++.+.+.. +.++.+|+.. ++|+++----|..+..++..+==..+..++.-+..||+
T Consensus 165 --~~-----d~~W~~~~~R-~~vEd~~t~--Dw~E~~vA~nlv~E~l~tnLl~~~~~~~Aa~nGD~~t~t~~~s~qsDes 234 (511)
T 3u52_A 165 --MH-----DRVWYLSVPK-SFFDDARSA--GPFEFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEA 234 (511)
T ss_dssp --HH-----TTCGGGHHHH-HHHHHHHHS--CHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --hc-----CccccchhhH-HHHhhcccc--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHCCCHhHHHHHHHHHHHHH
Confidence 11 1111 222 233333322 3578888875 57877443333333344433322456667899999999
Q ss_pred hHHHHHHHHHHHHHcc-CC-HHHHHHHHH-------HHHHHHHHhh-HhhcCCCCCCCCHHHHHHHHHHH---HHHHHHH
Q 039934 204 LHCDFACLLYSLLRNK-LS-EERVKGIVK-------EAVEIEREFV-CDALPCALVGMNGALMSQYIEFV---ADRLLGA 270 (329)
Q Consensus 204 ~H~~~~~~l~~~l~~~-~~-~~~i~~~~~-------eav~~E~~~~-~~~~~~~~~Gl~~~~~~~yi~y~---an~~l~~ 270 (329)
+|...+..+++.+..+ +. .+.+..-++ .|+. -...+ ++..+...... ++..+.|++-. .-++|..
T Consensus 235 Rh~~w~~alvk~~l~~dp~Nr~llq~wl~~w~wra~~Al~-~lg~~~dY~~p~r~~s~-~e~~~~~~e~~~~~~~~~L~~ 312 (511)
T 3u52_A 235 RHMTLGLEVIKFILEQHEDNVPIVQRWIDKWFWRGFRLLS-LVSMMMDYMLPNKVMSW-SEAWEVYYEQNGGALFKDLER 312 (511)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTCSSCCCCH-HHHHHHHTHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCccccccH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999977643 32 222332222 2221 12222 33334222222 45565654332 3456899
Q ss_pred cCCCCC
Q 039934 271 LGCGKV 276 (329)
Q Consensus 271 lG~~~~ 276 (329)
+|++.+
T Consensus 313 ~Gl~~P 318 (511)
T 3u52_A 313 YGIRPP 318 (511)
T ss_dssp GTCCCC
T ss_pred hCCCCC
Confidence 999875
No 26
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ...
Probab=96.90 E-value=0.024 Score=53.57 Aligned_cols=164 Identities=10% Similarity=-0.083 Sum_probs=106.8
Q ss_pred HhcCCHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---c-HHH
Q 039934 53 WESLTADEK-HFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKN---S-DEK 127 (329)
Q Consensus 53 ~~~L~~~er-~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d---~-~e~ 127 (329)
+..+++.-+ +.++..++.+..++-....+.+ .+....+.+.++.+..+|+++|-+|+..-++.+..+..+ . ...
T Consensus 128 ~~~ld~~w~~~~l~~~l~~~r~~Eyga~~~~a-~~~r~~~~~~i~na~~fqa~DeLRhaQ~~~~~~~~l~~~~~gf~~~~ 206 (384)
T 1mty_B 128 IRAMNPTWRDEFINRYWGAFLFNEYGLFNAHS-QGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDEST 206 (384)
T ss_dssp GGGSCHHHHHTTTTTHHHHHHHHHHHHHHTTH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCS
T ss_pred cccCCHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcchh
Confidence 456889999 8888888888888866555543 577888999999999999999999999878886655311 0 000
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHh-hcCChhHHHHHHHHH-HHHHHHhHhHHHH-HHHHH-hcCCCcchHHHHHHHHhhhh
Q 039934 128 SRLFRAFETVPCVAKKADWALNW-IDGSETFAERLIAFA-CVEGIFFSGSFCA-IFWLK-KRGLMPGLTFSNELISRDEG 203 (329)
Q Consensus 128 ~~~~~~~~~~~~l~~k~~~~~~~-~~~~~~~~~~lv~~~-~lEgi~f~s~F~~-~~~l~-~~~~l~g~~~~i~~I~rDE~ 203 (329)
..-=..|.++|..+-=-+++.+. +.. .++.+.+++.. ++|+++----|.- +-.++ .+|=+ .+..++.-+..||+
T Consensus 207 ~~~k~~W~~dp~wq~~R~~vE~~~l~~-~Dw~E~~va~nlv~epl~~~L~~~~~~~~~Aa~nGD~-~tp~l~~s~q~D~~ 284 (384)
T 1mty_B 207 AVPKAEWTNGEVYKSARLAVEGLWQEV-FDWNESAFSVHAVYDALFGQFVRREFFQRLAPRFGDN-LTPFFINQAQTYFQ 284 (384)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHTC-CCHHHHHHHHHHTHHHHHHHHHHHTTHHHHGGGGTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHhhc-cCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCch-hHHHHHHHHHHHHH
Confidence 01112345566544433344444 321 23677878875 5688754322211 22343 33332 34445555999999
Q ss_pred hHHHHHHHHHHHHHcc
Q 039934 204 LHCDFACLLYSLLRNK 219 (329)
Q Consensus 204 ~H~~~~~~l~~~l~~~ 219 (329)
+|...+..+++.+.+.
T Consensus 285 Rh~~w~~alvk~lle~ 300 (384)
T 1mty_B 285 IAKQGVQDLYYNCLGD 300 (384)
T ss_dssp HHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988743
No 27
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2
Probab=96.85 E-value=0.035 Score=49.94 Aligned_cols=178 Identities=19% Similarity=0.114 Sum_probs=97.8
Q ss_pred hHHHHHHHHH--HhCCCCCCc-cCccc-------cHHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 039934 25 PEIWEMYKKA--EASFWTAEE-VDLSQ-------DIRQW----ESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEV 90 (329)
Q Consensus 25 ~~~~~ly~k~--~~~fW~p~e-id~~~-------D~~~~----~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~ 90 (329)
||+.+..... ....|.|++ ||.++ ...+| .+||+..+.++...+--=-.+.+.++ .+ ....
T Consensus 16 ~~~~~~~~~~l~~~~~W~p~d~lPw~~~~~F~~~~~~~~~~~~~~L~d~~~~~l~~~~itEd~LP~Y~~-~L----~~~~ 90 (275)
T 1za0_A 16 PVVEANMTRHLDTEDIWFAHDYVPFDQGENFAFLGGRDWDPSQSTLPRTITDACEILLILKDNLAGHHR-EL----VEHF 90 (275)
T ss_dssp HHHHHHHHHHHHTCCCCCGGGGCCGGGCCCCGGGTSCCCCGGGCCSCHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhhhhccCChhhcCCCcccccchhcccccccHhhccCCHHHHHHHHHHHHHhhcchHHHH-HH----HHhc
Confidence 4444444332 346799988 66542 34556 36888877766554422122222221 22 2222
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHH
Q 039934 91 -QVSEARAFYGFQIAIENIHSEMYSLLLETYI-KNSDEKSRLFRAFETVPCVAKKADWALNWIDG-SETFAERLIAFACV 167 (329)
Q Consensus 91 -~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~-~~~~~~~lv~~~~l 167 (329)
.++....|.....++|+.|+.+-..++-.-+ .||.. ++.. |...+.+-++. ..+.+..++.-.+-
T Consensus 91 ~~d~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~-------lE~~-----~~~~i~~g~~~~~~~p~~~~vy~~fq 158 (275)
T 1za0_A 91 ILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVA-------NEDV-----RVQHVMKGYRAEKYTQVETLVYMAFY 158 (275)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTT-------TTCT-----TC----------CCCHHHHHHHHHHH
T ss_pred CCCchHHHHhhhHhHHHHHHHHHHHHHHHHhCCCCHHH-------HHHH-----HHHHhhcCCCCCCCCHHHHHHHHHHH
Confidence 1356788899999999999999888886432 35542 1110 00111111111 11233444433456
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHH
Q 039934 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEE 223 (329)
Q Consensus 168 Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~ 223 (329)
|..-+ .++ -.+++..-=|-++++...|++||.+|..|...+++.+.+..+..
T Consensus 159 E~aT~-v~y---~n~a~~~~dPvL~~i~~~IA~DE~RH~~~y~~~v~~~le~dpd~ 210 (275)
T 1za0_A 159 ERCGA-VFC---RNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDE 210 (275)
T ss_dssp HHHHH-HHH---HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHH-HHH---HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 76543 222 23444444688999999999999999999999999888655433
No 28
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A
Probab=96.56 E-value=0.38 Score=44.55 Aligned_cols=174 Identities=12% Similarity=0.050 Sum_probs=94.4
Q ss_pred CCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHhh--cC--hHHHHHHHHHHHHHHH
Q 039934 37 SFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAA-----SDGIVLENLAARFMKE--VQ--VSEARAFYGFQIAIEN 107 (329)
Q Consensus 37 ~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~-----~d~~v~~~l~~~~~~~--~~--~~E~~~~~~~q~~~E~ 107 (329)
.+|.|.+.-.--+-+.|..||+++|..+.+--..-.. .+.++..-+...++.. .. ....+...-+.+.+|+
T Consensus 58 ~~~~p~ellpl~gtp~w~~l~~eqR~~L~~~e~~~~~s~~I~~E~~lv~~~~r~i~~~~~p~~~~~~~~ya~ltei~DE~ 137 (336)
T 3chh_A 58 VPDYPLEIVPFAEHPLFLAAEPHQRQRVLTGMWIGYNERVIATEQLIAEPAFDLVMHGVFPGSDDPLIRKSVQQAIVDES 137 (336)
T ss_dssp SCSSCGGGCTTTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCSTTTTCHHHHHHHHHHHHHHH
T ss_pred CCCCChhhccccCCHhHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHH
Confidence 4566655444455577999999999987655322222 3434333333444444 12 3444444355667999
Q ss_pred HHHHHHHHHHHH----hcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHH--H-HHHHHHHhHhHHHHHH
Q 039934 108 IHSEMYSLLLET----YIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIA--F-ACVEGIFFSGSFCAIF 180 (329)
Q Consensus 108 iH~~sYs~il~~----~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~--~-~~lEgi~f~s~F~~~~ 180 (329)
.|+..+.+..+. .+..|. +. . ..+.+-++..-..... +..+-..++. . .+.|-+.= ...-
T Consensus 138 ~Hs~Mf~~~~~~~~~~~G~~~~-----~~-~-p~~~l~r~l~~~la~~--~~~~~~~l~~~a~~lvaEeiid----~~~r 204 (336)
T 3chh_A 138 FHTYMHMLAIDRTRELRKISER-----PP-Q-PELVTYRRLRRVLADM--PEQWERDIAVLVWGAVAETCIN----ALLA 204 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC-----CC-C-CCCHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSBC----HHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCC-----CC-C-ChHHHHHHHHHHHccC--chhhhhHHHHHHHHHHHHHHHH----HHHH
Confidence 999999999983 443311 10 0 0111212122122111 2222222222 2 23565531 1122
Q ss_pred HHHhcCCCcchH-HHHHHHHhhhhhHHHHHHHHHHHHHccCCHH
Q 039934 181 WLKKRGLMPGLT-FSNELISRDEGLHCDFACLLYSLLRNKLSEE 223 (329)
Q Consensus 181 ~l~~~~~l~g~~-~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~ 223 (329)
.+.+..-++.+. .+++-=.+||++|+.|+..+++.+....++.
T Consensus 205 ~~~~D~~vQP~vR~v~riHv~DEaRH~~fare~~~~~~~~l~~~ 248 (336)
T 3chh_A 205 LLARDATIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQ 248 (336)
T ss_dssp HHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 234444455444 4556668999999999999999998888754
No 29
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A
Probab=96.01 E-value=0.068 Score=50.72 Aligned_cols=151 Identities=9% Similarity=0.005 Sum_probs=91.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCcHHHHHH
Q 039934 52 QWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLL-ETYIKNSDEKSRL 130 (329)
Q Consensus 52 ~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il-~~~~~d~~e~~~~ 130 (329)
-|+.+|+.=|..+.++++.++-++-.-...- ......+|+-..+..+..-..+|..|...+.+++ +.++.|.. +.
T Consensus 97 ~WqemP~eYR~~LiRlI~~haDSEiagve~e-~~wi~~APSL~~k~~L~aiVqDE~gHg~~mlyllae~fG~Dr~---e~ 172 (481)
T 3pf7_A 97 VWQEVPGEYRSTLRRIIVTQGDTEPASVEQQ-RHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGR---EE 172 (481)
T ss_dssp CBSSCCGGGHHHHHHHHHHHHHHHHHHHHHH-TTGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHH---HH
T ss_pred chhhCCHHHHHHHHHHHHHHhhhHHhhchhh-hhHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCHH---HH
Confidence 3889999999999999998877664432221 2344566777776666666789999999888888 66643322 22
Q ss_pred HHHHhhcHHHHHHHH------HHHHhhc-CChhHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhh
Q 039934 131 FRAFETVPCVAKKAD------WALNWID-GSETFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDE 202 (329)
Q Consensus 131 ~~~~~~~~~l~~k~~------~~~~~~~-~~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE 202 (329)
.+. +.+|.. ......+ .-.+++.. +++ .++.|.- -.-+..|.+. -.--++..++.|+..|
T Consensus 173 ad~------LL~R~sGd~~~pk~L~~FNyPt~~WaD~-~~f~~LvDrAg----i~qL~~L~~s-SY~PlARamr~I~kEE 240 (481)
T 3pf7_A 173 GEA------LLERRSGDEDNPRILTAFNEKTPDWLSF-FMFTFITDRDG----KFQLASLAES-AFDPLARTCKFMLTEE 240 (481)
T ss_dssp HHH------HHHCCTTCSSSCCSSGGGSSCCCSHHHH-HHHHHHTHHHH----HHHHHHHTTC-SBHHHHHHHHHHHHHH
T ss_pred HHH------HHhhccCCcccccccccccCCCCCHHHH-HHHHHhhhHHH----HHHHHHHHhC-CcHHHHHHHHHHhhHH
Confidence 221 111100 0011111 12234444 444 3555542 2222234443 3445788899999999
Q ss_pred hhHHHHHHHHHHHHHc
Q 039934 203 GLHCDFACLLYSLLRN 218 (329)
Q Consensus 203 ~~H~~~~~~l~~~l~~ 218 (329)
+.|...|-..+.++..
T Consensus 241 afH~~~Ge~gl~rli~ 256 (481)
T 3pf7_A 241 AHHLFVGESGIARVIQ 256 (481)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999987776643
No 30
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6
Probab=95.86 E-value=0.69 Score=39.02 Aligned_cols=199 Identities=11% Similarity=0.077 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH--HHHHHHHH
Q 039934 57 TADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDE--KSRLFRAF 134 (329)
Q Consensus 57 ~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e--~~~~~~~~ 134 (329)
|+.=|++|.++=+-..-++....+|.. .+...+|. -+-=+..-+-||++|.+.|.--=+++...|+- -.+.|...
T Consensus 28 s~~YkdAYSRINaIVIEGEqeA~dNyi-~la~llP~--~~dEL~rLakME~rH~kgF~aCGrNL~V~pDm~fA~~fF~~L 104 (244)
T 2oc5_A 28 SDRYKDAYSRINAIVIEGEQEAHDNYI-AIGTLLPD--HVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPL 104 (244)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhheeeEechHHHHHhHH-HHHHHCcc--cHHHHHHHHHHHHHHHhHHHHhccCCcCCCCcHHHHHHHHHH
Confidence 567789999998888888877777765 35555544 33446777789999999998888888655531 12233322
Q ss_pred hhcHHHHHHHHHHHHhhcCChhHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Q 039934 135 ETVPCVAKKADWALNWIDGSETFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 213 (329)
Q Consensus 135 ~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~ 213 (329)
..+= .++ ... ....-.++.- .++|.. .-++|-+. +.-- =|--.++-.-+.+||..|..||..-+
T Consensus 105 H~nF---q~A------~~~-gkv~TCLlIQaLiIE~F-AIaAYniY--IpVA--D~FARkITegVVkDEY~HLNfGe~WL 169 (244)
T 2oc5_A 105 RDNF---QTA------LGQ-GKTPTCLLIQALLIEAF-AISAYHTY--IPVS--DPFARKITEGVVKDEYTHLNYGEAWL 169 (244)
T ss_dssp HHHH---HHH------HHT-TCHHHHHHHHHTHHHHH-HHHHHHHH--GGGS--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHH------Hhc-CCeeehHHHHHHHHHHH-HHHHHhhc--cccc--cHHHHHHHHhHHhhHHhhcchHHHHH
Confidence 2111 111 010 1122222222 245542 11222221 1100 12234577889999999999998665
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHhhHhhc-CCCCCCCCHHHH-HHHHHHHHHHHHHHcCCCC
Q 039934 214 SLLRNKLSEERVKGIVKEAVEIEREFVCDAL-PCALVGMNGALM-SQYIEFVADRLLGALGCGK 275 (329)
Q Consensus 214 ~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~-~~~~~Gl~~~~~-~~yi~y~an~~l~~lG~~~ 275 (329)
+.-.. .+.+++.+.-++...+-.+.++..- +..++|++++.+ ..|+- .-...|.++|+..
T Consensus 170 k~~f~-~~K~el~~ANr~nLPlv~~MLnqV~~Da~vL~MekealvedFmi-~YgEAL~~IGF~t 231 (244)
T 2oc5_A 170 KANLE-SCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLI-AYQESLTEIGFNT 231 (244)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHHHHHHTCCH
T ss_pred HHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHcCCcH
Confidence 43321 1233444333333333333333222 236788887554 55554 4456788899864
No 31
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A
Probab=92.44 E-value=5.3 Score=35.15 Aligned_cols=191 Identities=9% Similarity=0.046 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-cHHHHHHHHHHhhcHHHHH
Q 039934 65 THVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY-IKN-SDEKSRLFRAFETVPCVAK 142 (329)
Q Consensus 65 ~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~-~~d-~~e~~~~~~~~~~~~~l~~ 142 (329)
.+.+..++-.+-+.+.-+. .-+...|.-|.+..++..+-+|.=|+..+-.+..++ +.+ .++ + . +...+.
T Consensus 6 ~~~l~~laD~elil~~r~~-eW~~~AP~LEediAlanialDelGhar~ly~~a~~l~G~~~~D~---L-a-~~R~~~--- 76 (249)
T 1otk_A 6 TAYTLRLGDNCLVLSQRLG-EWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDT---L-A-FTRDER--- 76 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHH---H-H-HSCCGG---
T ss_pred HHHHHHHhCHHHHhccccc-hHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH---H-H-HhcCHH---
Confidence 3334444443333333332 245577888999999999999999999999999988 652 321 2 1 111111
Q ss_pred HHHHHHH-hhc-CChhHHHHHHHHHHHHHHHhHhHHHHHHHHH-hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHcc
Q 039934 143 KADWALN-WID-GSETFAERLIAFACVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNK 219 (329)
Q Consensus 143 k~~~~~~-~~~-~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~-~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~ 219 (329)
++-+- ..+ ...+|+..++. -+++.++..+..-. .+.--+-++.+..+|++.|..|..++...+.+|..
T Consensus 77 --~frn~~l~e~P~gdwa~ti~r------~~l~d~~~~~~~~~L~~ss~~plA~ia~K~~kEe~yH~~h~~~w~~rL~~- 147 (249)
T 1otk_A 77 --QFSNLLLVEQPNGNFADTIAR------QYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGN- 147 (249)
T ss_dssp --GCCCCGGGGSCCCSHHHHHHH------HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred --HhhccHHHcCCCCCHHHHHHH------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 00000 111 12346555443 23455555554322 33446889999999999999999999998888863
Q ss_pred CCHHHHHHHHHHHHHHHHHhhHhhcCCC---------CCCCCHHHHHHHHHHHHHHHHHHcCCC
Q 039934 220 LSEERVKGIVKEAVEIEREFVCDALPCA---------LVGMNGALMSQYIEFVADRLLGALGCG 274 (329)
Q Consensus 220 ~~~~~i~~~~~eav~~E~~~~~~~~~~~---------~~Gl~~~~~~~yi~y~an~~l~~lG~~ 274 (329)
..++-++.+.+|++.=-.++...|+.+ -++.+.+++.+=-.-.....|..+|++
T Consensus 148 -gT~Es~~r~Q~Al~~~wp~~~elF~~~~~~~~l~~~Gi~~~~~~Lr~~w~~~v~~~l~~agL~ 210 (249)
T 1otk_A 148 -GTDVSGQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLN 210 (249)
T ss_dssp -SCHHHHHHHHHHHHHHGGGTGGGGCCCHHHHHHHHTTSSCCGGGGHHHHHHHHHHHHHHTTCC
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 235567777777765444444334210 122344444444344555666677764
No 32
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=90.68 E-value=4 Score=30.33 Aligned_cols=68 Identities=10% Similarity=0.183 Sum_probs=54.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Q 039934 54 ESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDE 126 (329)
Q Consensus 54 ~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e 126 (329)
.+||+..++...-+-+...-++.+ ++=...+...++|+++.++.-.+-.|..|+-.+-.+|+.+ ||..
T Consensus 11 ~~ls~~~~d~~rai~aL~~EleAI---~~Y~q~A~~t~D~evk~vl~~iadEEkeH~g~~l~~Lrr~--dp~~ 78 (95)
T 1zpy_A 11 QELSDETRDMHRAIISLREELEAV---DLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRC--DPAF 78 (95)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHH
Confidence 479999999887776554444433 4445688899999999999999999999999999999987 5653
No 33
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=88.83 E-value=10 Score=32.23 Aligned_cols=199 Identities=15% Similarity=0.110 Sum_probs=120.5
Q ss_pred HHHHHHHhCCCCC-CccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHH-
Q 039934 29 EMYKKAEASFWTA-EEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIE- 106 (329)
Q Consensus 29 ~ly~k~~~~fW~p-~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E- 106 (329)
.|+++.. |.+ ...|+-+.+.+ .+||++.-..+..--..+ +. ...+.+ .......++++.+..+...+..|
T Consensus 11 ~L~~~~~---~~~~~~HPf~~~l~~-G~L~~e~~~~yl~qdy~y--l~-~f~~~~-a~~~~~~~~~~~~~~~~~~i~~e~ 82 (231)
T 1rcw_A 11 QLDLIIQ---NKHMLEHTFYVKWSK-GELTKEQLQAYAKDYYLH--IK-AFPKYL-SAIHSRCDDLEARKLLLDNLMDEE 82 (231)
T ss_dssp HHHHHHH---HTCGGGSHHHHHHHT-TCCCHHHHHHHHHHTHHH--HH-HHHHHH-HHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HhhcccCHHHHHHhC-CCCCHHHHHHHHHHhHHH--HH-HHHHHH-HHHHhcCCCHHHHHHHHHHHHHhc
Confidence 4555444 544 45555443321 368765544332221111 11 112222 23456778888888887777777
Q ss_pred ---HHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhHHHH--HHH
Q 039934 107 ---NIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCA--IFW 181 (329)
Q Consensus 107 ---~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~--~~~ 181 (329)
..|.+.|.+.++.++.++++ .....-.|..+.=.+++.+...+. ++...+.++.+.|++.- ..+. .-.
T Consensus 83 ~~~~~h~~l~~~~~~~~Gi~~~~----~~~~~~~p~t~~y~~~~~~~~~~~-~~~~~laal~~~E~~~~--~~~~~~~~~ 155 (231)
T 1rcw_A 83 NGYPNHIDLWKQFVFALGVTPEE----LEAHEPSEAAKAKVATFMRWCTGD-SLAAGVAALYSYESQIP--RIAREKIRG 155 (231)
T ss_dssp SSSSCHHHHHHHHHHHTTCCHHH----HHHCCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHTTHH--HHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHcCCCHHH----HhcCCCCHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 68999999999999877653 333445677777777777766543 45666666444576631 1111 011
Q ss_pred HHh-cCCC--cchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhHhhc
Q 039934 182 LKK-RGLM--PGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDAL 244 (329)
Q Consensus 182 l~~-~~~l--~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~ 244 (329)
+.. .+.. -+..---..+.-| ..|+..+..++..+.. ...+++.+++..+.+.|..|-+.+.
T Consensus 156 ~~~~~~wi~~~~~~~f~~h~~~d-~~h~~~~~~~l~~~~~-~~~~~~~~~~~~~~~le~~fwd~~~ 219 (231)
T 1rcw_A 156 LTEYFGFSNPEDYAYFTEHEEAD-VRHAREEKALIEMLLK-DDADKVLEASQEVTQSLYGFLDSFL 219 (231)
T ss_dssp HHHHSCCCSGGGGHHHHHHHHHH-HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCCChhhhHHHHHHHHHh-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2333 2333344556667 4799999999888876 4677899999999999999997655
No 34
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1}
Probab=87.67 E-value=16 Score=33.31 Aligned_cols=152 Identities=15% Similarity=0.073 Sum_probs=88.4
Q ss_pred HHHhhcChHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhH
Q 039934 85 RFMKEVQVSEARAFYGFQIAIE-------NIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETF 157 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E-------~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~ 157 (329)
......++++.+..+.....+| ..|.+.|..+++.++.+++ +......|....-.++......+. ++
T Consensus 162 ~~~a~~~~~~~r~~l~e~i~DE~G~g~~e~~H~el~~~~l~~lGld~~-----~~~~~~~p~~~~~v~~~~~~~~~~-~~ 235 (332)
T 3bjd_A 162 DLLVNLTDVDEAAALARYLYGELGEEDEKGSHPRLLAKLLEAIGLEAD-----FQAVSTMPEEIAYLNNRARAFRHA-EV 235 (332)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHHTTTTCGGGCHHHHHHHHHHHTTCCCC-----TTCCCCCHHHHHHHHHHHHHHHCS-ST
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHcCCChh-----HhcccCCHHHHHHHHHHHHHHhcC-CH
Confidence 4556778888888887766666 3689999999999987764 233444576555555555554333 24
Q ss_pred HHHHHHHHHHHHHHhHhHHHH-HHHHHhcCCCc-chHHHHHHHHhhhhhHH-HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 039934 158 AERLIAFACVEGIFFSGSFCA-IFWLKKRGLMP-GLTFSNELISRDEGLHC-DFACLLYSLLRNKLSEERVKGIVKEAVE 234 (329)
Q Consensus 158 ~~~lv~~~~lEgi~f~s~F~~-~~~l~~~~~l~-g~~~~i~~I~rDE~~H~-~~~~~l~~~l~~~~~~~~i~~~~~eav~ 234 (329)
...+.++.+.|+... .+|.- .-.+.+.|.-+ +..---.+|.-|. .|. .....++..+.....++.+...+..+++
T Consensus 236 ~~alaal~~~E~~~p-~~y~~i~~~l~~~g~~~~~~~yf~~HI~lD~-~H~~~~~~~ll~~~~~~~~q~~~~~a~~~~l~ 313 (332)
T 3bjd_A 236 GWGLAVFYITELVVP-GNHEKLYRALLQAGLSEDQAEYYKVHISLVP-PRAKREWQLIARRIPDVQFQNAFLTSLSQHFR 313 (332)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCTTTTHHHHHHHHHCC----CTTHHHHHTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHHHcCCCcccchHHHHHHHHhH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 455555567899753 33433 33566666523 4455668888888 488 3333332322111112234455555558
Q ss_pred HHHHhhHhhc
Q 039934 235 IEREFVCDAL 244 (329)
Q Consensus 235 ~E~~~~~~~~ 244 (329)
.+..|.+.+.
T Consensus 314 ~~~~f~D~l~ 323 (332)
T 3bjd_A 314 VERAYYDAIW 323 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776543
No 35
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*
Probab=82.78 E-value=24 Score=30.81 Aligned_cols=139 Identities=11% Similarity=-0.075 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHH-HhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 039934 93 SEARAFYGFQIAIENI-------HSEMYSLLLE-TYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAF 164 (329)
Q Consensus 93 ~E~~~~~~~q~~~E~i-------H~~sYs~il~-~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~ 164 (329)
++...-+..-..+|.= |.+.|.+.++ .++.|++. + .-.|.-++=++-+.+++ +. +...++-|+
T Consensus 72 ~~~~~eL~~NL~EE~G~~d~~~~H~~lyRr~L~~~lGld~~~------~-~p~~sT~~~idt~~~lc-s~-d~~~aLGA~ 142 (244)
T 3b5o_A 72 NGVAQELQENIDEEMGSTTGGISHYTLLADGLEEGLGVAVKN------T-MPSVATSKLLRTVLSLF-DR-QVDYVLGAT 142 (244)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHCCCCTT------C-CCCHHHHHHHHHHHHHH-TS-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhcCCCccc------c-CCCchHHHHHHHHHHHh-CC-CHHHHHHHH
Confidence 5555555555566754 9999999999 99888853 2 33455555566666677 43 345566666
Q ss_pred HHHHHHHhHh--HHHHH-HHHHhcCCCcchH-HHHHHHHh-hhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHh
Q 039934 165 ACVEGIFFSG--SFCAI-FWLKKRGLMPGLT-FSNELISR-DEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREF 239 (329)
Q Consensus 165 ~~lEgi~f~s--~F~~~-~~l~~~~~l~g~~-~~i~~I~r-DE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~ 239 (329)
..+|++.-+. -+.-+ -.|.+. ..|.-. .-..+=.. +|.-|..-...++....+......+.+-...+++....|
T Consensus 143 yatE~iaipe~~ly~~li~gL~~~-~~~~~~l~FF~~HidelE~~Ha~~l~~~l~~~~~~eef~~~~~G~~~~Lda~~~f 221 (244)
T 3b5o_A 143 YAIEATSIPELTLIVKLVEWLHEG-AIPKDLQYFFSKHLDEWEIEHEAGLRTSVAAYIQPEEFGEFAAGFRAMIDAMQVW 221 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHHHC-------CHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHhC-CCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 6899985442 12222 234333 344422 33333334 788899988888776654444677778888888877766
Q ss_pred hH
Q 039934 240 VC 241 (329)
Q Consensus 240 ~~ 241 (329)
-+
T Consensus 222 Wd 223 (244)
T 3b5o_A 222 WQ 223 (244)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 36
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei}
Probab=80.54 E-value=20 Score=28.53 Aligned_cols=107 Identities=12% Similarity=0.011 Sum_probs=64.7
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIA 163 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~ 163 (329)
...+..-.-|++..++..++..|..|++.+-.+|..+ .+|. ...| +. +..+.|-.
T Consensus 35 A~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~L~~~-~~p~---------~~~~------------~~---~T~enL~~ 89 (144)
T 4di0_A 35 ASKADVEGQNDIAALFRSTAEGETGHAHGHLEYLEAV-GDPA---------TGLP------------FG---TSRQNLQS 89 (144)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCTT---------TSCC------------CS---SHHHHHHH
T ss_pred HHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcc---------cCCC------------CC---cHHHHHHH
Confidence 3444455568899999999999999999877777654 3441 0001 11 11122221
Q ss_pred HHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 039934 164 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 215 (329)
Q Consensus 164 ~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~ 215 (329)
-..-|.--....|..+...++.--.+.++..++.|++||..|......++..
T Consensus 90 A~~GE~~e~~~~Y~~~a~~A~~eG~~~ia~~f~~~a~~E~~Ha~~~~~~l~~ 141 (144)
T 4di0_A 90 AIAGETHEYTDMYPGMAKTARDEGFEEIANWFETLAKAERSHANRYTKALDG 141 (144)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1122222211223333333555558999999999999999999987776653
No 37
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=78.64 E-value=18 Score=26.81 Aligned_cols=67 Identities=10% Similarity=0.205 Sum_probs=51.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Q 039934 54 ESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSD 125 (329)
Q Consensus 54 ~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~ 125 (329)
.+||+..++...-+.+.-.-+|.+ ++=...+...++|+++.++.-.+-+|-.|...+..+|+.+ ||.
T Consensus 11 e~Ls~e~~d~~Rai~sl~~EleAI---~~Y~q~a~~~~d~~~k~vl~~i~~EEkeH~g~~lelLrr~--Dp~ 77 (95)
T 3k6c_A 11 QELSDETRDMHRAIISLREELEAV---DLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRC--DPA 77 (95)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHH
Confidence 479999888776665443334433 3444577889999999999999999999999999999976 664
No 38
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=78.10 E-value=32 Score=29.42 Aligned_cols=150 Identities=9% Similarity=-0.038 Sum_probs=85.0
Q ss_pred HHhhcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 039934 86 FMKEVQVSE--ARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIA 163 (329)
Q Consensus 86 ~~~~~~~~E--~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~ 163 (329)
.+...++++ .+..+...+..|.-|-..+-+-++.++.++++ .....-.|....-++++....... ++...+.+
T Consensus 62 a~~ka~~~~~~~~~~~~~~~~~e~~~e~~~~~~l~~~G~~~~~----~~~~~~~pat~aY~~~l~~~a~~~-~~~~~la~ 136 (239)
T 3dde_A 62 VGIMGKDLPGKYLSFCFHHAHEEAGHELMALSDIASIGFDRED----VLSSKPLPATETLIAYLYWISATG-NPVQRLGY 136 (239)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHTTTHHHHHHHHHHTTCCHHH----HHTCCCCHHHHHHHHHHHHHHHSS-CGGGGHHH
T ss_pred HHHhCCCchHHHHHHHHHHHHHHHChHHHHHHHHHHhCCCHHH----HHhCCCChHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 334556655 66677767677766665655668888766542 334455787777777777665432 23334444
Q ss_pred HHHHHHHHhHhHHHHHHHHHhcCCCcc--hHHHHHHHHhhhhhHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHhh
Q 039934 164 FACVEGIFFSGSFCAIFWLKKRGLMPG--LTFSNELISRDEGLHCDFACLLYSLLRN-KLSEERVKGIVKEAVEIEREFV 240 (329)
Q Consensus 164 ~~~lEgi~f~s~F~~~~~l~~~~~l~g--~~~~i~~I~rDE~~H~~~~~~l~~~l~~-~~~~~~i~~~~~eav~~E~~~~ 240 (329)
..++||+.-.++-. .-.+.+.--+|. +.-..-...-|+ -|......++..+.. ....+.|.+.++.+.++...+.
T Consensus 137 ~~~~E~~y~~~~~~-~~~l~~~~~l~~~~~~f~~~h~~~d~-~h~~~~~~~ld~~~~~~~~~~~ii~~a~~~~~l~~~~f 214 (239)
T 3dde_A 137 SYWAENVYGYIDPV-LKAIQSTLDLTPQSMKFFIAHSKIDA-KHAEEVNEMLHEVCKTQEDVDSVVAVMENSLVLTARIL 214 (239)
T ss_dssp HHHHHTCHHHHHHH-HHHHHHHTTCCGGGGHHHHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHH-HHHHHHHhCcCHHHHHHHHHHHhcch-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899985112222 223443322453 222223333454 688888887777742 2234556666666676666665
Q ss_pred Hh
Q 039934 241 CD 242 (329)
Q Consensus 241 ~~ 242 (329)
+.
T Consensus 215 ~~ 216 (239)
T 3dde_A 215 DD 216 (239)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 39
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=75.51 E-value=32 Score=28.16 Aligned_cols=102 Identities=7% Similarity=-0.085 Sum_probs=62.5
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIA 163 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~ 163 (329)
...+..-.-|++...+..++..|..|++-.-..|..+ ++. ...|+.-+ .
T Consensus 29 A~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~L~~i-~~t------------~enL~~a~------------------~ 77 (170)
T 3pwf_A 29 AEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKL-GKT------------PENLQMGI------------------E 77 (170)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCH------------HHHHHHHH------------------H
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCh------------HHHHHHHH------------------H
Confidence 4455565668999999999999999998654443211 111 01111100 0
Q ss_pred HHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHcc
Q 039934 164 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNK 219 (329)
Q Consensus 164 ~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~ 219 (329)
-=.-|..--|..|+ ..++.--...++..+++|.+||..|......++..+...
T Consensus 78 gE~~e~~~mY~~~a---~~A~eeg~~~~a~~f~~i~~~E~~H~~~~~~~l~~l~~~ 130 (170)
T 3pwf_A 78 GETFEVEEMYPVYN---KAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKG 130 (170)
T ss_dssp HHHHHHHTHHHHHH---HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00011111222222 335555568899999999999999999999988888643
No 40
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=75.19 E-value=36 Score=28.64 Aligned_cols=114 Identities=14% Similarity=-0.013 Sum_probs=70.9
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 039934 86 FMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFA 165 (329)
Q Consensus 86 ~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~ 165 (329)
.+..-.-+++..++..++..|..|++-|..++..+..++. + .+ .|. ..+. +..+.|-...
T Consensus 53 ~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~l~~l~~~~~----i--~~--~p~---------~~~g---st~enL~~a~ 112 (202)
T 1yuz_A 53 AAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYE----K--PT--VAA---------PSAY---SCDLNLISGA 112 (202)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC----C--CC--C-----------CCCC---CHHHHHHHHH
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce----e--cc--CCc---------cCCC---CHHHHHHHHH
Confidence 4444455889999999999999999999999998865552 2 11 121 0011 1111111111
Q ss_pred HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHcc
Q 039934 166 CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNK 219 (329)
Q Consensus 166 ~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~ 219 (329)
--|.--....+--+.-.++.-....++..+++|.++|..|......++..+...
T Consensus 113 ~gE~~E~t~my~~~a~~A~eEgd~~~a~~f~~i~~~E~~H~~~~~~ll~~l~~~ 166 (202)
T 1yuz_A 113 NGEIYETSDMYPAFIRKAQEEGNSKAVHVFTRAKLAESVHAERYLAAYNDIDAP 166 (202)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 122222222233333345555578999999999999999999988888777644
No 41
>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A
Probab=70.29 E-value=55 Score=28.54 Aligned_cols=120 Identities=11% Similarity=0.006 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcc
Q 039934 111 EMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPG 190 (329)
Q Consensus 111 ~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g 190 (329)
..+..+++.++.++++ + ....|..+.-.+++.+...+ .++...++++..+|.++...|- .+..... +.
T Consensus 127 ~lh~~~~~~~Gi~~~~---~---~~~~pat~aYt~~ll~~a~~-g~~~~~laAl~pC~~~Y~eig~----~l~~~~~-~~ 194 (258)
T 2a2m_A 127 EYNETYHQTWHLREAS---G---LIPGTDIKDYADYEAYVAGS-LASPYMCVVMLPCEYLWPWIAN----FLDGYTP-TN 194 (258)
T ss_dssp HHHHHHHHTSCBCCGG---G---BCCCHHHHHHHHHHHHHHHH-SCTHHHHHHHHHHHHHHHHHHH----HHGGGSC-TT
T ss_pred HHHHHHHHHcCCCHHH---c---cCCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHH----HHHhccC-CC
Confidence 4445567777655543 2 34567777777777665432 2467777777767766644332 2232211 21
Q ss_pred hHHHHHHHH---hhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhHhhc
Q 039934 191 LTFSNELIS---RDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDAL 244 (329)
Q Consensus 191 ~~~~i~~I~---rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~ 244 (329)
..--.||. .|| -++.....++..+..+.+.+++.+++..+++.|..|-+...
T Consensus 195 -~~Y~~WI~~~Y~~~-~~v~~~~~lld~~~~~~~~~~l~~~F~~a~~lE~~Fwd~a~ 249 (258)
T 2a2m_A 195 -SLYRFWIEWNGGTP-NGAYQMGNMLEQYRDKIDEDKAVEIFNTAMNYELKVFTSST 249 (258)
T ss_dssp -STTHHHHHHHCSCC-HHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -chHHHHHHhccCCH-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11235666 777 68888888887776666778999999999999999987665
No 42
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2
Probab=69.39 E-value=19 Score=32.04 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=35.7
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcH
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIK-NSD 125 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~-d~~ 125 (329)
.++......|-.+..++..+.+|++|..+|.++++.++. ||.
T Consensus 167 ~n~a~~~~dPvL~~i~~~IA~DE~RH~~~y~~~v~~~le~dpd 209 (275)
T 1za0_A 167 RNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRD 209 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 356678889999999999999999999999999998852 443
No 43
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=68.31 E-value=21 Score=26.44 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=40.7
Q ss_pred hHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 039934 156 TFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 216 (329)
Q Consensus 156 ~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l 216 (329)
.+.+++.+.. =+|.|.+|...+-. -.-|.+..++.-|+.+|-.|.+-...+++.+
T Consensus 19 d~~Rai~sl~~EleAI~~Y~q~a~~------~~d~~~k~vl~~i~~EEkeH~g~~lelLrr~ 74 (95)
T 3k6c_A 19 DMHRAIISLREELEAVDLYNQRVNA------CKDKELKAILAHNRDEEKEHAAMLLEWIRRC 74 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555655543 38888887776654 5568999999999999999999777665543
No 44
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=66.78 E-value=27 Score=25.86 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=42.1
Q ss_pred hHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 039934 156 TFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 216 (329)
Q Consensus 156 ~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l 216 (329)
++.+++.+.. =+|+|-+|...+.. -.-|.+..+..-|+.+|-.|++-...+++.+
T Consensus 19 d~~rai~aL~~EleAI~~Y~q~A~~------t~D~evk~vl~~iadEEkeH~g~~l~~Lrr~ 74 (95)
T 1zpy_A 19 DMHRAIISLREELEAVDLYNQRVNA------CKDKELKAILAHNRDEEKEHAAMLLEWIRRC 74 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666554 48999998877665 4558899999999999999999777665544
No 45
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A
Probab=66.60 E-value=54 Score=27.11 Aligned_cols=124 Identities=15% Similarity=0.059 Sum_probs=71.5
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH-HHHHHHH--HhhcHHHHHHHHHHHHhhc-CChhHHHH
Q 039934 85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDE-KSRLFRA--FETVPCVAKKADWALNWID-GSETFAER 160 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e-~~~~~~~--~~~~~~l~~k~~~~~~~~~-~~~~~~~~ 160 (329)
..+..-.-+++...+...+..|..|++-|..++..+-.++.. .-+..+. -...|. ..+. +.++.-+.
T Consensus 49 ~~A~~EG~~~IA~~F~~~A~~E~~HA~r~~kll~~l~~~~~~~~~~~~~~v~~~~~p~---------~~~~~T~eN~~~~ 119 (179)
T 3qhb_A 49 EIARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVSTIESQI---------DAVASDSRGLRRA 119 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCHHHHHHHHHHHHHHHTH---------HHHHHSHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccc---------cccCcHHHHHHHH
Confidence 344454558899999999999999999999998866332100 0000111 111221 1111 11121111
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 161 LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 161 lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
|-+..--|.--.-..|--+--.++.--++.++..++.|+++|..|......++..+.
T Consensus 120 L~~A~~GE~~E~~~mYp~fA~~A~eEG~~eiA~~F~~ia~~Ek~H~~ry~~ll~~l~ 176 (179)
T 3qhb_A 120 LETALEVETIESQKTYPAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLL 176 (179)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233222222333333466666899999999999999999999998887765
No 46
>2hz8_A De novo designed DIIRON protein; four-helix bundle, de novo protein; NMR {Escherichia coli} PDB: 2lfd_A 2lff_A
Probab=63.61 E-value=16 Score=28.02 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=38.7
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhH
Q 039934 189 PGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 189 ~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~ 241 (329)
.-.-++|.-|.+||-.|....+.++. +. +++.-.+.+..|+.-|.+-.+
T Consensus 61 ee~k~iI~eIr~DE~rH~~~F~~lY~---TG-~p~sY~eGL~~A~~~Eqeave 109 (115)
T 2hz8_A 61 PEKRQVIDKILEDEEKHIEWLKAASK---QG-NAEQFASLVQQILQDEQRHVE 109 (115)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHHHHH---SS-CCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hC-ChHhHHHHHHHHHHHHHHHHH
Confidence 44566899999999999999999888 44 556677888888888876543
No 47
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=58.77 E-value=62 Score=25.18 Aligned_cols=107 Identities=12% Similarity=0.036 Sum_probs=67.1
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 039934 86 FMKEVQVSEARAFYGFQIAIENIHSEMYSLLLET--YIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIA 163 (329)
Q Consensus 86 ~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~--~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~ 163 (329)
.+..-.-+.+..++-.|+..|..|+..+-..+.. + +.|. . ..| +.+ ....+-.
T Consensus 33 ~a~~~g~~~~a~~f~~~A~eE~~HA~~~~~~l~~~~l-g~p~--------~-~~p------------~~~---~~e~L~~ 87 (144)
T 1j30_A 33 RADEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGL-TDPA--------T-DKP------------IGT---LEQMIES 87 (144)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-BCTT--------T-SCB------------CSS---HHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCC--------c-CCC------------Ccc---HHHHHHH
Confidence 3344455889999999999999999988777765 5 3341 0 111 111 1111111
Q ss_pred HHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 164 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 164 ~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
-.-.|.--....+.-+...++....+.++..++.|..||..|......++..+.
T Consensus 88 al~~E~~~~~~~y~~~~~~A~~egd~~~~~~f~~i~~~E~~H~~~~~~~l~~i~ 141 (144)
T 1j30_A 88 AIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLK 141 (144)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222233344444566777899999999999999999999888877664
No 48
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=58.53 E-value=66 Score=26.61 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=42.3
Q ss_pred HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccC-------C---HHHHHHHHHHHHHHHHHhhH
Q 039934 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKL-------S---EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 181 ~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~-------~---~~~i~~~~~eav~~E~~~~~ 241 (329)
++.+.| ++|++.-+...+.+|.-|..-....+..+-..+ + ...+.++++.+.+.|+..+.
T Consensus 35 ~f~~~~-l~g~a~~f~~~A~EE~~HA~~l~~~i~~rGG~~~l~~i~~p~~~~~s~~e~le~aL~~Ek~v~~ 104 (189)
T 3uno_A 35 YFDSED-LPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRNQFDRPREALALALDQERTVTD 104 (189)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 456667 999999999999999999986555444332211 1 13567888888888887554
No 49
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=56.75 E-value=62 Score=27.18 Aligned_cols=60 Identities=10% Similarity=-0.068 Sum_probs=44.1
Q ss_pred HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC--------HHHHHHHHHHHHHHH-HHhh
Q 039934 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS--------EERVKGIVKEAVEIE-REFV 240 (329)
Q Consensus 181 ~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~--------~~~i~~~~~eav~~E-~~~~ 240 (329)
..++.--+++++..++.++.+|..|......++..+-..+. .....+.++.+++.| .+|.
T Consensus 52 ~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~l~~l~~~~~i~~~p~~~~gst~enL~~a~~gE~~E~t 120 (202)
T 1yuz_A 52 KAAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAAPSAYSCDLNLISGANGEIYETS 120 (202)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCC--CCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCccCCCCHHHHHHHHHHhHHHHHH
Confidence 34666668999999999999999999988877766522211 124677888888888 6654
No 50
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=55.59 E-value=78 Score=25.84 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=43.8
Q ss_pred HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccC--------CH--HHHHHHHHHHHHHHHHhhH
Q 039934 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKL--------SE--ERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 182 l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~--------~~--~~i~~~~~eav~~E~~~~~ 241 (329)
+...| ++|++..++....+|.-|..-....+..+-..+ +. ..+.++++.+++.|...+.
T Consensus 36 ~~~~g-f~~l~~~f~~~a~ee~~Had~laeri~~lGg~p~~~~i~~~~~~~~~~~e~l~~~l~~E~~~~~ 104 (189)
T 3oj5_A 36 FDSED-LPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRNQFDRPREALALALDQERTVTD 104 (189)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35556 999999999999999999997777766653221 11 2467888888888887654
No 51
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Probab=55.16 E-value=60 Score=29.71 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=32.4
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039934 85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI 121 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~ 121 (329)
+++....+|-.+..++..+.+|++|..+|.++++.++
T Consensus 183 r~A~~~gdPvLa~i~~~IA~DE~RH~~~Y~~~v~~~l 219 (338)
T 2uw1_A 183 KLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLA 219 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555678899999999999999999999999999775
No 52
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=54.84 E-value=1.1e+02 Score=26.66 Aligned_cols=150 Identities=12% Similarity=-0.041 Sum_probs=96.3
Q ss_pred HHhhcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 039934 86 FMKEVQVSEARAFYGFQIAIE-NIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAF 164 (329)
Q Consensus 86 ~~~~~~~~E~~~~~~~q~~~E-~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~ 164 (329)
.....++++...++..++... ......+..+++.++.++++ .....-.|....-.+++.+...+ .++...++++
T Consensus 85 a~aka~~~~~~~~l~~~i~~~~~~E~~lh~~~~~~~Gi~~~~----l~~~~~~pat~aYt~~l~~~a~~-g~~~~~laAl 159 (263)
T 2qcx_A 85 GAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEE----RKAFKPSPTAYSFTSHMYRSVLS-GNFAEILAAL 159 (263)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHH----HHSCCCCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH----HhhCCCChHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 444567777777766654432 12344555667888776643 34455578877778888776544 3577777777
Q ss_pred HHHHHHHhHhHHHHHHHHHhcCCCcc--hHHHHHHHHhhh-hhHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHH
Q 039934 165 ACVEGIFFSGSFCAIFWLKKRGLMPG--LTFSNELISRDE-GLHCDFACLLYSLLRNKLSE---ERVKGIVKEAVEIERE 238 (329)
Q Consensus 165 ~~lEgi~f~s~F~~~~~l~~~~~l~g--~~~~i~~I~rDE-~~H~~~~~~l~~~l~~~~~~---~~i~~~~~eav~~E~~ 238 (329)
..+|.++...|- .+..... |. ..+=|+.=.-+| .-|+.....++..+....++ +++.+++..+.+.|..
T Consensus 160 ~pC~w~Y~~ig~----~l~~~~~-~~~~Y~~WI~~y~~~df~~~v~~~~~lld~l~~~~s~~~~~~l~~~F~~a~~lE~~ 234 (263)
T 2qcx_A 160 LPCYWLYYEVGE----KLLHCDP-GHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQ 234 (263)
T ss_dssp HHHHHHHHHHHH----HHTTCCC-CSHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHhccC-CCcHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 778887654332 2333322 33 233333334455 57999999999888766654 4678899999999999
Q ss_pred hhHhhcC
Q 039934 239 FVCDALP 245 (329)
Q Consensus 239 ~~~~~~~ 245 (329)
|-+....
T Consensus 235 Fwd~a~~ 241 (263)
T 2qcx_A 235 FWGMAYR 241 (263)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9887663
No 53
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=54.10 E-value=79 Score=24.93 Aligned_cols=58 Identities=19% Similarity=0.061 Sum_probs=41.9
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHhhH
Q 039934 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---------EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~i~~~~~eav~~E~~~~~ 241 (329)
..--++|++..+...+.+|..|..-....+..+--.|. ...+.+++..+.+.|.+++.
T Consensus 33 ~~~g~~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~ 99 (159)
T 4am5_A 33 EDWGYKDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDPLRIGQTVKEVLESDLAAEREARA 99 (159)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 34458999999999999999999866655544432221 13577888888888887764
No 54
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=51.29 E-value=45 Score=26.19 Aligned_cols=58 Identities=16% Similarity=0.045 Sum_probs=43.4
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHhhH
Q 039934 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---------EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~i~~~~~eav~~E~~~~~ 241 (329)
+..-+++++..+..+..+|..|..-....+..+-..+. ...+.++++.+++.|...+.
T Consensus 35 ~~~~~~~l~~~f~~~a~ee~~Had~l~e~i~~lGg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~ 101 (161)
T 3uoi_A 35 DNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLAIEYDVLN 101 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999977777666533221 13467788888888877664
No 55
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=51.04 E-value=1e+02 Score=25.41 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=65.8
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 039934 85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAF 164 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~ 164 (329)
..+..-.-+.+..++-.|+..|..|+.-+-..+. ++.+. ... ..|. ..+. +....+-.-
T Consensus 32 ~~a~~~G~~~iA~~f~~~A~eE~~HA~~~~~~l~--gg~~~-----i~~--~~p~---------~~~~---s~~e~l~~a 90 (191)
T 1lko_A 32 GQAKKDGFVQISDIFAETADQEREHAKRLFKFLE--GGDLE-----IVA--AFPA---------GIIA---DTHANLIAS 90 (191)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCC--SSCCC-----CCC--CCCC---------CCCC---CHHHHHHHH
T ss_pred HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcc-----ccC--cCCc---------cccC---CHHHHHHHH
Confidence 3444445588999999999999999986655553 22221 000 0010 0000 111111111
Q ss_pred HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHcc
Q 039934 165 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNK 219 (329)
Q Consensus 165 ~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~ 219 (329)
.--|..-....+.-+...++.-....++..++++..+|..|......++..+...
T Consensus 91 l~~E~~e~t~~y~~~~~~A~eegd~~~~~~f~~~~~~E~ehe~~~~~~l~~l~~~ 145 (191)
T 1lko_A 91 AAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKEG 145 (191)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1122222222233344446665678899999999999999999999888877643
No 56
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV}
Probab=48.52 E-value=1.4e+02 Score=26.13 Aligned_cols=199 Identities=13% Similarity=0.059 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHhCCCCC-CccCccccHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHhhcC------h
Q 039934 25 PEIWEMYKKAEASFWTA-EEVDLSQDIRQWE--SLTADEKHFITHVLAFFAASDGIVLENLAA---RFMKEVQ------V 92 (329)
Q Consensus 25 ~~~~~ly~k~~~~fW~p-~eid~~~D~~~~~--~L~~~er~~~~~~l~~~~~~d~~v~~~l~~---~~~~~~~------~ 92 (329)
+|..++|+.... .|.. -+-|+ ++.|. +||.+--..+.. -|...-..... ..+.-.+ .
T Consensus 20 ~~se~L~~~~~~-iw~~i~~HPF---v~~L~dGtL~~e~Fr~Yl~-------QDy~YL~~far~~Al~~aKa~~~~~~~~ 88 (262)
T 3oql_A 20 AWAQQLINDCSP-AKARVVEHEL---YQQMRDAKLSPQIMRQYLI-------GGWPVVEQFAVYMAKNLTKTRFGRHPGE 88 (262)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCHH---HHHHHTTCSCHHHHHHHHH-------HHHHHHHHHHHHHHHHHTTCCTTSCHHH
T ss_pred HHHHHHHHHhHH-HHHHHHCChH---HHHHHcCCCCHHHHHHHHH-------HhHHHHHHHHHHHHHHHHhCccccCCCh
Confidence 677777766544 4543 23333 34453 688655444332 22222222211 1112222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHH-HHHHHHH
Q 039934 93 SEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAF-ACVEGIF 171 (329)
Q Consensus 93 ~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~-~~lEgi~ 171 (329)
.+++.++...+..|..|.+-+..+.+.++.++++ .....-.|.-..-..++.+.... .++...+.|. ..+|+..
T Consensus 89 ~~~~~~l~~~i~vE~~H~~~~~~f~~~~Gis~ee----l~~~~~~P~~~aYt~~ml~~a~~-g~l~e~lAAl~ya~e~~i 163 (262)
T 3oql_A 89 DMARRWLMRNIRVELNHADYWVNWCAAHDVTLED----LHDQRVAPELHALSHWCWQTSSS-DSLAVAMAATNYAIEGAT 163 (262)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHTTTCCHHH----HHHTCSCGGGGHHHHHHHHHHHH-SCHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCHHH----HhcCCCChHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHh
Confidence 4677777767777888999888899988777653 33344456655556666654322 2355555554 4455543
Q ss_pred hHhHHHHHHHHHhcCC----CcchH---HHHHHH---HhhhhhHHHHHHHHHHHHHccC-CH---HHHHHHHHHHHHHHH
Q 039934 172 FSGSFCAIFWLKKRGL----MPGLT---FSNELI---SRDEGLHCDFACLLYSLLRNKL-SE---ERVKGIVKEAVEIER 237 (329)
Q Consensus 172 f~s~F~~~~~l~~~~~----l~g~~---~~i~~I---~rDE~~H~~~~~~l~~~l~~~~-~~---~~i~~~~~eav~~E~ 237 (329)
---+ .-...|+ .++.. ...+|| ..=...|..-...++..+..+. ++ +++.+.+..+.+.|.
T Consensus 164 g~~s-----~~~~~g~~~~~~~~~~~~~~~~~w~~~h~~~D~~H~~e~~~li~~l~~~~~~~~e~~~~~~a~~~S~~~~~ 238 (262)
T 3oql_A 164 GEWS-----AVVCSTGVYAEAFAEETRKKSMKWLKMHAQYDDAHPWEALEIICTLVGNKPSLQLQAELRQAVTKSYDYMY 238 (262)
T ss_dssp HHHH-----HHHHSSSHHHHTSCHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH-----HHhhhhHHHhcCCCcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 2100 0011221 11110 122222 2222479999999999888554 43 467888899999999
Q ss_pred HhhHhhc
Q 039934 238 EFVCDAL 244 (329)
Q Consensus 238 ~~~~~~~ 244 (329)
.|.+...
T Consensus 239 ~fld~~y 245 (262)
T 3oql_A 239 LFLERCI 245 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988766
No 57
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A
Probab=47.64 E-value=1.1e+02 Score=24.66 Aligned_cols=61 Identities=11% Similarity=0.026 Sum_probs=42.6
Q ss_pred HHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH--------ccCC----HHHHHHHHHHHHHHHHHhhH
Q 039934 180 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR--------NKLS----EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 180 ~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~--------~~~~----~~~i~~~~~eav~~E~~~~~ 241 (329)
.++.+.| +||++.-+..-+.+|.-|..-....+...- .+|+ ...+.+++..+.++|+.-..
T Consensus 28 ~~f~~~~-l~g~a~~f~~~s~EE~~HA~kl~~~i~~rgg~~~l~~i~~p~~~~~~~~~~e~le~aL~~Ek~v~~ 100 (168)
T 3e6s_A 28 IWFDQND-WEGMAAYMLAESAEEREHGLGFVDFANKRNIPIELQAVPAPVSCAEWSSPEDVWQSILELEQANTR 100 (168)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCGGGTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHCcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcCCCCccccCCCHHHHHHHHHHHHHHHHH
Confidence 3567777 899999999999999999985544433321 1222 12467888888888887554
No 58
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=47.06 E-value=1.1e+02 Score=24.46 Aligned_cols=106 Identities=12% Similarity=-0.056 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 039934 92 VSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIF 171 (329)
Q Consensus 92 ~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~ 171 (329)
-+.+..++-.++..|..|++.....+..++..|. ...+.. .....+....+-...-.|. .
T Consensus 42 ~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~-----~~~~~~--------------~~~~~~~~e~l~~al~~E~-~ 101 (179)
T 1nfv_A 42 YGELAANMKLIAIDEMRHAENFAERIKELGGEPT-----TQKEGK--------------VVTGQAVPVIYESDADQED-A 101 (179)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CCCSSC--------------CCCSCCHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCc-----CCCCCc--------------CCCCCCHHHHHHHHHHHHH-H
Confidence 3889999999999999999999999988865552 111100 1011111111111111222 1
Q ss_pred hHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 172 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 172 f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
....+--+..++....=+.++.++..+..||..|......++..+.
T Consensus 102 ~~~~y~~l~~~a~~~~D~~t~~~l~~~~~eEe~h~~~l~~~l~~l~ 147 (179)
T 1nfv_A 102 TIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIK 147 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222333444444589999999999999999988887776654
No 59
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Probab=46.36 E-value=1.1e+02 Score=24.28 Aligned_cols=109 Identities=15% Similarity=-0.014 Sum_probs=66.0
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 039934 89 EVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVE 168 (329)
Q Consensus 89 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lE 168 (329)
...-+....++..|+..|..|++.....+..++..|.- ..+...+ ...+....+-...-.|
T Consensus 36 ~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~-----~~i~~~~--------------~~~~~~e~l~~al~~E 96 (174)
T 3qb9_A 36 NWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNY-----QRIGSLR--------------IGQTLREQFEADLAIE 96 (174)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-----SCCCCCC--------------CCSSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccc-----cCCCCCC--------------CCCCHHHHHHHHHHHH
Confidence 33447888999999999999999999888888765531 1111100 0011111111111122
Q ss_pred HHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 169 gi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
.- ....+--+..+++...=++++..++++.++|..|.......+..+.
T Consensus 97 ~~-~~~~y~~l~~~a~~~~D~~t~~~l~~~l~eEe~h~~~l~~~l~~i~ 144 (174)
T 3qb9_A 97 YD-VLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMD 144 (174)
T ss_dssp HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122223334455555689999999999999999998887776665
No 60
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=44.75 E-value=1.1e+02 Score=23.83 Aligned_cols=110 Identities=15% Similarity=-0.008 Sum_probs=68.0
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 039934 88 KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACV 167 (329)
Q Consensus 88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~l 167 (329)
....-+....++-.|+..|.-|++.....+..+++.|.- ..+.. +....+....+-+..-.
T Consensus 35 ~~~~~~~l~~~f~~~a~ee~~Had~l~e~i~~lGg~p~~-----~~~~~--------------~~~~~~~~e~l~~~l~~ 95 (161)
T 3uoi_A 35 DNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNY-----QRIGS--------------LRIGQTLREQFEADLAI 95 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-----SCCCC--------------CCCCSSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcC-----CCCCC--------------CCCCCCHHHHHHHHHHH
Confidence 444557788889999999999999999988888766631 11111 11111211111111111
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 168 Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
|.- ....+--+..++....=++++..+..|.+||.-|..+....+..+.
T Consensus 96 E~~-~~~~~~~~~~~A~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~i~ 144 (161)
T 3uoi_A 96 EYD-VLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMD 144 (161)
T ss_dssp HHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1122233334465556799999999999999999999888777664
No 61
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=44.10 E-value=69 Score=24.83 Aligned_cols=58 Identities=19% Similarity=0.035 Sum_probs=43.6
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHhhH
Q 039934 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---------EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~i~~~~~eav~~E~~~~~ 241 (329)
...-+++++..+..++.+|..|..-....++.+-..++ ...+.++++.+++.|...+.
T Consensus 33 ~~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~ 99 (158)
T 2y3q_A 33 KNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAK 99 (158)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34457999999999999999999988777766643221 13467888888888887664
No 62
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=43.81 E-value=57 Score=26.20 Aligned_cols=57 Identities=18% Similarity=0.042 Sum_probs=43.3
Q ss_pred cCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHhhH
Q 039934 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---------EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 185 ~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~i~~~~~eav~~E~~~~~ 241 (329)
..-+++++..+..++.+|..|..-....+..+-..+. ...+.++++.+++.|...+.
T Consensus 39 ~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~~~~~e~l~~al~~E~~~~~ 104 (179)
T 1nfv_A 39 DMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIE 104 (179)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCCCCSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999988777766543221 12477888888888887664
No 63
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=43.39 E-value=1.2e+02 Score=23.72 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=44.2
Q ss_pred HhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHhhH
Q 039934 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---------EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 183 ~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~i~~~~~eav~~E~~~~~ 241 (329)
.+..-+++++..+..+..+|..|..-....+..+-..+. ...+.+++..+++.|...+.
T Consensus 32 ~~~~~~~~l~~~f~~~a~ee~~Had~l~eri~~lGg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~ 99 (161)
T 3gvy_A 32 QEDWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNPLRIGQTLRETLDADLAAEHDART 99 (161)
T ss_dssp HHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344568999999999999999999988777766643322 13467888888888877664
No 64
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=43.08 E-value=1.2e+02 Score=23.82 Aligned_cols=112 Identities=11% Similarity=-0.058 Sum_probs=67.0
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 039934 86 FMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFA 165 (329)
Q Consensus 86 ~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~ 165 (329)
......-+....++-.|+..|..|++.....+..+++.|. +..+. -|. ...+.....+..+..
T Consensus 31 ~~~~~g~~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG~p~-----~~~~~-~~~----------~~~~~~e~l~~~l~~- 93 (159)
T 4am5_A 31 MLEDWGYKDLAKKWRAESIEEMAHADKFVERILFLEGLPN-----LQTLD-PLR----------IGQTVKEVLESDLAA- 93 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CSBCC-CCC----------CCSSHHHHHHHHHHH-
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-----ccccc-ccc----------cchhHHHHHHHHHHH-
Confidence 3344555778888999999999999988888877876663 11110 000 001111111111110
Q ss_pred HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 166 CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 166 ~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
=-+.+ ..+.-+..+++...-+.++..+++|..||.-|.......+..+.
T Consensus 94 E~~~~---~~~~~~~~~a~~~~D~~t~~~l~~il~eEeeH~~~l~~~L~~i~ 142 (159)
T 4am5_A 94 EREAR---ALYQEGAAYAASVGDFPSKNLFEELMGDEEHHIDFLETQLDLVS 142 (159)
T ss_dssp HHHHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 22233334566667799999999999999999998877766554
No 65
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=41.82 E-value=1.3e+02 Score=23.94 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039934 67 VLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY 120 (329)
Q Consensus 67 ~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~ 120 (329)
+|..-..++.-....+ ..++..+++++++..+...+..|..|.+.+..+++.+
T Consensus 109 ~L~~ai~~E~~a~~~Y-~~~a~~~~d~~~r~l~~~ia~eE~~H~~~l~~~l~~l 161 (175)
T 2fzf_A 109 LIRWAMKAEEIAAEFY-LKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELL 161 (175)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444322233 4567777888888888888888889998888888766
No 66
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Probab=39.79 E-value=84 Score=24.96 Aligned_cols=58 Identities=16% Similarity=0.045 Sum_probs=43.1
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHhhH
Q 039934 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---------EERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~i~~~~~eav~~E~~~~~ 241 (329)
...-+++++..+..++.+|..|..-....+..+-..+. ...+.++++.+++.|...+.
T Consensus 35 ~~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~i~~~~~~~~~~e~l~~al~~E~~~~~ 101 (174)
T 3qb9_A 35 DNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLAIEYDVLN 101 (174)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34457999999999999999999987777766643221 12467888888888887554
No 67
>3hl1_A Ferritin like protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Caulobacter vibrioides}
Probab=38.67 E-value=68 Score=29.03 Aligned_cols=39 Identities=10% Similarity=0.003 Sum_probs=31.1
Q ss_pred HHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHcc
Q 039934 179 IFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNK 219 (329)
Q Consensus 179 ~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~ 219 (329)
.|++...+ ......|+-|+++|.+|....+++++.+-..
T Consensus 33 ~ySi~~~n--~~~~~~i~~V~~eEMlHl~l~aNll~AiGg~ 71 (317)
T 3hl1_A 33 LYSIKDPT--TVPYRLIQAAVYQEMLHAQLVSNIANAYGYS 71 (317)
T ss_dssp HHHBSCTT--SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44454433 5788999999999999999999999888543
No 68
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=38.14 E-value=60 Score=28.66 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=34.0
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY 120 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~ 120 (329)
.+++..+.+|.++..+.+-+..|.+|...|...++.+
T Consensus 156 ~rl~~~tdDp~vkd~L~fLi~RE~~H~~~f~~aLe~l 192 (266)
T 1o9i_A 156 SRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEEL 192 (266)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999999999999999987
No 69
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3
Probab=37.87 E-value=1.8e+02 Score=24.33 Aligned_cols=139 Identities=15% Similarity=-0.069 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 039934 92 VSEARAFYGFQIA----IENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACV 167 (329)
Q Consensus 92 ~~E~~~~~~~q~~----~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~l 167 (329)
+++...++..++. .|.- .+..+++.++.++++ .....-.|....=.+++.+...+. ++...+++...+
T Consensus 65 ~~~~~~~l~~~~~~~i~~E~~---lh~~~~~~~Gi~~~~----~~~~~~~p~t~aY~~~l~~~a~~~-~~~~~laAl~pc 136 (226)
T 1udd_A 65 EYPLMAELIELARDEVTVEVE---NYVKLLKELDLTLED----AIKTEPTLVNSAYMDFMLATAYKG-NIIEGLTALLPC 136 (226)
T ss_dssp CTTHHHHHHHHHHHHTTHHHH---HHHHHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHH----HhhCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 5555555544433 3532 233446788766643 334455777777777777665332 467777777778
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHH---hhh-hhHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHhhHh
Q 039934 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELIS---RDE-GLHCDFACLLYSLLRNK-LSEERVKGIVKEAVEIEREFVCD 242 (329)
Q Consensus 168 Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~---rDE-~~H~~~~~~l~~~l~~~-~~~~~i~~~~~eav~~E~~~~~~ 242 (329)
|+++...|-...-.. .+ .|+ .---+||. -+| .-|+.....++..+ . ...+++.+++..+.+.|..|-+.
T Consensus 137 ~~~Y~~ig~~l~~~~--~~-~~~-~~y~~Wi~~y~~~~f~~~v~~~~~lld~~--~~~~~~~~~~~f~~a~~lE~~Fwd~ 210 (226)
T 1udd_A 137 FWSYAEIAEYHKDKL--RD-NPI-KIYREWGKVYLSNEYLNLVGRLRKIIDSS--GHSGYDRLRRIFITGSKFELAFWEM 210 (226)
T ss_dssp HHHHHHHHHHTHHHH--TT-CSC-HHHHHHHHGGGSHHHHHHHHHHHHHHHTS--CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CC-CCC-chHHHHHHHhCCHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888765542221111 12 244 22235554 244 45777777776665 3 34578999999999999999876
Q ss_pred hc
Q 039934 243 AL 244 (329)
Q Consensus 243 ~~ 244 (329)
..
T Consensus 211 a~ 212 (226)
T 1udd_A 211 AW 212 (226)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 70
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=37.05 E-value=1.6e+02 Score=23.45 Aligned_cols=120 Identities=12% Similarity=0.050 Sum_probs=69.7
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH-HhhcHHHHHHHHHHHHhhcCChhHHHHHH
Q 039934 84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRA-FETVPCVAKKADWALNWIDGSETFAERLI 162 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~-~~~~~~l~~k~~~~~~~~~~~~~~~~~lv 162 (329)
..++..+++|+++..+..-+.+|..|.+.+..++..+.++.. ..+. ..-.|.+.. ....+....+. ...+
T Consensus 40 ~~~A~~~~~~~~~~~f~~lA~~E~~H~~~l~~~~~~l~g~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~L 110 (175)
T 2fzf_A 40 KSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKE----VVFPKEHIGPELQP----VARELEKVQDI-IDLI 110 (175)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCC----CCCCSCCBSCCCCC----CCSCCCSHHHH-HHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----Ccchhhhhhhhhhh----hHHhccccCCH-HHHH
Confidence 357778889999999999999999999999999987632110 0000 000000000 00000001111 1112
Q ss_pred HHH-HH--HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHc
Q 039934 163 AFA-CV--EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRN 218 (329)
Q Consensus 163 ~~~-~l--Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~ 218 (329)
..+ -. +++-||..++-. -.=+.+..++..|++||..|......++..+..
T Consensus 111 ~~ai~~E~~a~~~Y~~~a~~------~~d~~~r~l~~~ia~eE~~H~~~l~~~l~~l~~ 163 (175)
T 2fzf_A 111 RWAMKAEEIAAEFYLKLEEM------VKEEEKKRLMRYLADMERGHYYTLRAEYELLLN 163 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 221 22 234444444332 223899999999999999999988888776653
No 71
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A*
Probab=35.87 E-value=1.7e+02 Score=23.43 Aligned_cols=55 Identities=11% Similarity=0.002 Sum_probs=41.3
Q ss_pred CCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccC--------CH--HHHHHHHHHHHHHHHHhhH
Q 039934 187 LMPGLTFSNELISRDEGLHCDFACLLYSLLRNKL--------SE--ERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 187 ~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~--------~~--~~i~~~~~eav~~E~~~~~ 241 (329)
-++|++..++..+.+|.-|..-....+..+-..+ +. ..+.++++.+++.|+..+.
T Consensus 49 ~~~~la~~f~~~a~EE~~HAd~l~eri~~lGg~~~l~~i~~p~~~~~~~~e~le~~l~~E~~v~~ 113 (176)
T 1vlg_A 49 GFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQ 113 (176)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999997776666553222 11 3477888888888887664
No 72
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A
Probab=35.75 E-value=52 Score=29.65 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=48.9
Q ss_pred hCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q 039934 36 ASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSL 115 (329)
Q Consensus 36 ~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~ 115 (329)
.+-|++.-|.-+.|+.. -+...+ .++.- ++..-.+++..+.+|.++..+.+-+..|.+|...|..
T Consensus 130 G~pWta~Yv~~~Gdl~a----------DL~~Ni----aAE~~-Ar~~Y~rL~~~tdDp~vkd~L~fLi~RE~~H~~~f~~ 194 (302)
T 2v8t_A 130 GEHWNGEYVFTSGNLIL----------DLLHNF----FLEVA-ARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGK 194 (302)
T ss_dssp SCBCBGGGCCCCSCHHH----------HHHHHH----HHHHH-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchhcCCCCHHH----------HHHHHH----HHHHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888877776642 111111 11111 1122246778889999999999999999999999999
Q ss_pred HHHHh
Q 039934 116 LLETY 120 (329)
Q Consensus 116 il~~~ 120 (329)
.++.+
T Consensus 195 ALe~l 199 (302)
T 2v8t_A 195 ALESL 199 (302)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99998
No 73
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}
Probab=34.37 E-value=1.8e+02 Score=23.37 Aligned_cols=89 Identities=17% Similarity=0.031 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCH---------HH
Q 039934 154 SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSE---------ER 224 (329)
Q Consensus 154 ~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~---------~~ 224 (329)
++.....|-.....|-...+--+..-.++...| +++++..+..+..+|..|..-....+..+-..+.- ..
T Consensus 25 ~~~~~~~LN~~la~E~~a~~~Y~~~a~~~~~~~-~~~l~~~f~~~a~eE~~Had~laeri~~lGg~p~~~~~~~~~~~~~ 103 (182)
T 3fvb_A 25 EPKVIERLNEALFLELGAVNQYWLHYRLLNDWG-YTRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSPLRIGQN 103 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCCCCCCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCC
Q ss_pred HHHHHHHHHHHHHHhhHhh
Q 039934 225 VKGIVKEAVEIEREFVCDA 243 (329)
Q Consensus 225 i~~~~~eav~~E~~~~~~~ 243 (329)
+.++++.+++.|...+..+
T Consensus 104 ~~e~l~~~l~~E~~~~~~y 122 (182)
T 3fvb_A 104 VKEVLEADLKGEYDARASY 122 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 74
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=33.19 E-value=2.1e+02 Score=23.79 Aligned_cols=144 Identities=15% Similarity=-0.084 Sum_probs=86.9
Q ss_pred HHhhcChHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHH
Q 039934 86 FMKEVQVSEARAFYGFQIAI----ENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERL 161 (329)
Q Consensus 86 ~~~~~~~~E~~~~~~~q~~~----E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~l 161 (329)
.....++++...++..++.. |.-+ +..+++.++.++++ .....-.|....=.+++.+...+ .++...+
T Consensus 66 ~~~ka~~~~~~~~l~~~~~~~i~~E~~l---h~~~~~~~Gi~~~~----~~~~~~~p~t~aY~~~l~~~a~~-~~~~~~l 137 (221)
T 2gm8_A 66 AASRAPSVDLMKTALELAYGTVTGEMAN---YEALLKEVGLSLRD----AAEAEPNRVNVSYMAYLKSTCAL-EGFYQCM 137 (221)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHTHHHH---HHHHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHH-SCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCCCHHH----HhhCCCChHHHHHHHHHHHHHhc-CCHHHHH
Confidence 44556777777666654432 5432 22346778766643 33455567777777777765543 2467777
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhcCC-CcchHHHHHHHH---hhh-hhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 039934 162 IAFACVEGIFFSGSFCAIFWLKKRGL-MPGLTFSNELIS---RDE-GLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIE 236 (329)
Q Consensus 162 v~~~~lEgi~f~s~F~~~~~l~~~~~-l~g~~~~i~~I~---rDE-~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E 236 (329)
+++..+|+++...|- .+..... .|+ .---+||. -+| .-|+.....++..+ +...+++.+++..+.+.|
T Consensus 138 aAl~pc~~~Y~~ig~----~l~~~~~~~~~-~~y~~Wi~~y~~~~f~~~v~~~~~lld~~--~~~~~~~~~~f~~a~~lE 210 (221)
T 2gm8_A 138 AALLPCFWSYAEIAE----RHGGKLRENPV-HVYKKWASVYLSPEYRGLVERLRAVLDSS--GLSAEELWPYFKEASLYE 210 (221)
T ss_dssp HHHHHHHHHHHHHHH----HHGGGGGGCCC-HHHHHHHHHHHSHHHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH----HHHhccCCCCC-chHHHHHHHhCCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 777778887654332 2222211 133 22234443 344 45777777776665 345678999999999999
Q ss_pred HHhhHhhc
Q 039934 237 REFVCDAL 244 (329)
Q Consensus 237 ~~~~~~~~ 244 (329)
..|-+...
T Consensus 211 ~~Fwd~a~ 218 (221)
T 2gm8_A 211 LEFWQAAY 218 (221)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987554
No 75
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=32.22 E-value=67 Score=26.60 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=39.3
Q ss_pred HhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHcc------CC---HHHHHHHHHHHHHHH-HHhh
Q 039934 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNK------LS---EERVKGIVKEAVEIE-REFV 240 (329)
Q Consensus 183 ~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~------~~---~~~i~~~~~eav~~E-~~~~ 240 (329)
+++.-++|++..++..+..|..|.......+. -.. .| -..+.+.+..+++.| .++.
T Consensus 34 a~~~G~~~iA~~f~~~A~eE~~HA~~~~~~l~--gg~~~i~~~~p~~~~~s~~e~l~~al~~E~~e~t 99 (191)
T 1lko_A 34 AKKDGFVQISDIFAETADQEREHAKRLFKFLE--GGDLEIVAAFPAGIIADTHANLIASAAGEHHEYT 99 (191)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCC--SSCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCccccCcCCccccCCHHHHHHHHHHhhHHHHH
Confidence 45556899999999999999999975444432 111 01 135778888888888 5654
No 76
>3ez0_A Uncharacterized protein with ferritin-like fold; YP_832262.1, protein of unknown function with ferritin-like structural genomics; HET: UNL TLA; 2.33A {Arthrobacter SP}
Probab=31.62 E-value=2.4e+02 Score=24.05 Aligned_cols=197 Identities=13% Similarity=0.064 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcH
Q 039934 59 DEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVP 138 (329)
Q Consensus 59 ~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~ 138 (329)
.....+..+|+.++.++...-..+.. =+...|+-..|.-++..+..|.-|-+.-...+...+.||.+-.+-|.... .
T Consensus 11 ~~~~~v~~llg~lAygel~AF~RLa~-da~~AP~L~~r~ala~mAaae~~hf~~L~~~l~~~G~D~~~am~pf~~~l--d 87 (225)
T 3ez0_A 11 RYNRFVADLFGMMAYGELSAFERFSA-DARYSPTLHDRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAMLPFQAAV--D 87 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCSSSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHGGGHHHH--H
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--H
Confidence 44556778888888888666555543 34566777888889999999999999888888888888854211122110 0
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHc
Q 039934 139 CVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRN 218 (329)
Q Consensus 139 ~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~ 218 (329)
. |- ....+.+|.++++--++.-|+.- =||.--..++=+.+...+.-+.. +.-|..|...-++.-..
T Consensus 88 ~------fh--~~T~P~dW~E~LvKaYVgdgla~-----DFy~~ia~~L~~~~r~~v~~vL~-~~~~~~f~v~~vraai~ 153 (225)
T 3ez0_A 88 Y------FH--SRTRPADWYESLMKAYVIDTVSA-----DFYRAISRYVDAGTRDVIEQIQA-SDETTEVLRERLRSALA 153 (225)
T ss_dssp H------HH--HTCCCSSHHHHHHHHHHHHHHHH-----HHHHHHTTTSCHHHHHHHHHHSC-CHHHHHHHHHHHHHHHH
T ss_pred H------HH--hcCCCCChHHHHHHHHHHhhHHH-----HHHHHHHhhCCHHHHHHHHHHhc-cccchHHHHHHHHHHHh
Confidence 0 00 11245568888887777776642 12211234555677887888776 55699999988887776
Q ss_pred cCCHH------HHHHHHHHHHHHHHHhhH------hhcCCCCCCCCH-----HHHHHHHHHHHHHHHHHcCCC
Q 039934 219 KLSEE------RVKGIVKEAVEIEREFVC------DALPCALVGMNG-----ALMSQYIEFVADRLLGALGCG 274 (329)
Q Consensus 219 ~~~~~------~i~~~~~eav~~E~~~~~------~~~~~~~~Gl~~-----~~~~~yi~y~an~~l~~lG~~ 274 (329)
..+.- .-+.++-|++-+-...+. ..+++. ++.. ..+...+.-...+||..||+.
T Consensus 154 aDp~l~sRLaLWgRRLvGEAL~qaQ~vla~~~~L~~l~~g~--dl~~~~~~v~~lf~~l~~~H~~RM~~LGL~ 224 (225)
T 3ez0_A 154 DDPRLASRLALWGRRLLGEALTQAQRVSYEHAFLGSLIGGE--DSAAAKELVSGLIAGLAEKHSKRMTQLGLT 224 (225)
T ss_dssp HCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcCC--CcchhhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 65432 234555555543333221 112111 3333 567777788889999999985
No 77
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=30.77 E-value=2.7e+02 Score=24.36 Aligned_cols=120 Identities=13% Similarity=0.045 Sum_probs=69.1
Q ss_pred cChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHhhcHHHHHHH------HHHH-------------
Q 039934 90 VQVSEA-RAFYGFQIAIENIHSEMYSLLLETYIKN-SDEKSRLFRAFETVPCVAKKA------DWAL------------- 148 (329)
Q Consensus 90 ~~~~E~-~~~~~~q~~~E~iH~~sYs~il~~~~~d-~~e~~~~~~~~~~~~~l~~k~------~~~~------------- 148 (329)
++.++. +..+.-.+.+|--|.+..+.++..+..+ +.+..+. ..+|.+.+-. -++.
T Consensus 49 ~~~~~~y~dLL~dIatEEl~HlEmva~~I~~L~~ga~~~~~~a----~~~p~~~~~~~g~n~~~~~~~g~g~~p~ds~G~ 124 (266)
T 1o9i_A 49 STGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDL----KRDPSLATTMAGMDPEHSLVHGLNASLNNPNGA 124 (266)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHH----HHCTTHHHHHHHSCHHHHHTTSSCCCSBCTTCC
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCcchhhc----ccchhhHhhhcCCChHHHHhcCCCCCccCCCCC
Confidence 344677 7888888899999999999999999643 2112111 1133321111 0221
Q ss_pred ----HhhcCChhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 149 ----NWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 149 ----~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
.++...-+...-+......|.-. -..+.-++.+.. =|++.+++.+|..||..|..-....++.+.
T Consensus 125 pWt~~yv~~~Gdl~aDL~~niaaE~~A-r~~Y~rl~~~td---Dp~vkd~L~fLi~RE~~H~~~f~~aLe~l~ 193 (266)
T 1o9i_A 125 AWNAGYVTSSGNLVADMRFNVVRESEA-RLQVSRLYSMTE---DEGVRDMLKFLLARETQHQLQFMKAQEELE 193 (266)
T ss_dssp BCBGGGCCCCSCHHHHHHHHHHHHHHH-HHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111112333333344455321 112222322333 389999999999999999998888777764
No 78
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Probab=29.00 E-value=1.7e+02 Score=23.52 Aligned_cols=56 Identities=7% Similarity=0.052 Sum_probs=40.8
Q ss_pred CCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHcc--------C-CH--HHHHHHHHHHHHHHHHhhH
Q 039934 186 GLMPGLTFSNELISRDEGLHCDFACLLYSLLRNK--------L-SE--ERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 186 ~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~--------~-~~--~~i~~~~~eav~~E~~~~~ 241 (329)
--+||+++-+..-+.+|.-|..-...-+..+-.. + .. ..+.++++.+.++|+.-+.
T Consensus 42 ~~l~g~a~~f~~~s~EE~~HA~~l~~~i~~rgg~~~l~~i~~p~~~~~~~~~e~le~aL~~Ek~v~~ 108 (174)
T 2v2p_A 42 VALEGVCHFFRQLAQQKMQGAERLLKMQNQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQ 108 (174)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999998666555444221 2 11 3577888888888887554
No 79
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=28.60 E-value=2.3e+02 Score=22.72 Aligned_cols=56 Identities=11% Similarity=-0.024 Sum_probs=39.3
Q ss_pred CCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccC--------CH--HHHHHHHHHHHHHHHHhhH
Q 039934 186 GLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKL--------SE--ERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 186 ~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~--------~~--~~i~~~~~eav~~E~~~~~ 241 (329)
--+||+++-++..+.+|.-|..-....+..+-..+ .. ..+.++++.+.++|+.-+.
T Consensus 36 ~~l~g~a~~f~~~a~EE~~HA~~l~~~i~~~gg~~~l~~i~~p~~~~~~~~e~le~aL~~E~~v~~ 101 (173)
T 1s3q_A 36 IGLKGFSNWMRVQWQEELMHAMKMFDFVSERGGRVKLYAVEEPPSEWDSPLAAFEHVYEHEVNVTK 101 (173)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44899999999999999999986665554442222 11 3477788888887776543
No 80
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=28.29 E-value=2.1e+02 Score=22.15 Aligned_cols=110 Identities=12% Similarity=-0.058 Sum_probs=67.2
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 039934 88 KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACV 167 (329)
Q Consensus 88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~l 167 (329)
....-+....++-.|+..|.-|++.....+..+++.|. ...+.. +....+....+-+..-.
T Consensus 33 ~~~~~~~l~~~f~~~a~ee~~Had~l~eri~~lGg~p~-----~~~~~~--------------~~~~~~~~e~l~~~l~~ 93 (161)
T 3gvy_A 33 EDWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPN-----LQRLNP--------------LRIGQTLRETLDADLAA 93 (161)
T ss_dssp HHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CSCCCC--------------CCCCSSHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCc-----cCCCCC--------------CCCCCCHHHHHHHHHHH
Confidence 33344667888899999999999999988888876663 111110 11111211111111112
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 168 Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
|.. .-..+--+..++....=++++..+..|.+||..|..+....+..+.
T Consensus 94 E~~-~~~~~~~~~~~A~~~~D~~t~~~l~~~~~eEe~h~~~l~~~l~~i~ 142 (161)
T 3gvy_A 94 EHD-ARTLYIEARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLMG 142 (161)
T ss_dssp HHH-HHHHHHHHHHHHTTTTCHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1122333334566666799999999999999999998887776664
No 81
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=27.78 E-value=2e+02 Score=21.93 Aligned_cols=109 Identities=13% Similarity=-0.079 Sum_probs=65.7
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 039934 89 EVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVE 168 (329)
Q Consensus 89 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lE 168 (329)
...-+.+..++-.++..|..|++.....+..++..|.- ..+... ....+....+-...-.|
T Consensus 34 ~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~-----~~~~~~--------------~~~~~~~e~l~~~l~~E 94 (158)
T 2y3q_A 34 NWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNL-----QDLGKL--------------NIGEDVEEMLRSDLALE 94 (158)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-----SCCCCC--------------CCCSSHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcC-----CCCCcC--------------CCCCCHHHHHHHHHHHH
Confidence 33347888889999999999999999998888765531 111110 00111111111111122
Q ss_pred HHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 169 gi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
.- ....+--+...+....=+.++..+..+..||..|.......+..+.
T Consensus 95 ~~-~~~~y~~~~~~a~~~~D~~t~~~l~~~~~ee~~h~~~l~~~l~~l~ 142 (158)
T 2y3q_A 95 LD-GAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQ 142 (158)
T ss_dssp HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122333333454445689999999999999999999888776664
No 82
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=27.75 E-value=1.2e+02 Score=26.86 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=43.5
Q ss_pred hHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHH
Q 039934 156 TFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVK 230 (329)
Q Consensus 156 ~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~ 230 (329)
.+..+++++ +.++++.--.. .-.+...=..|-........+-.|++|+...+.++..+.. +++++.+++.
T Consensus 61 ~~~~~~l~~~~~~D~iv~~~l---~~~~~~~v~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~--d~~e~~~~f~ 131 (286)
T 3olj_A 61 YFISHVLAFFAASDGIVNENL---VERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIK--DPKEREFLFN 131 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 466677665 57888763221 1112222224555666677788999999999999999973 3444444443
No 83
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=27.25 E-value=1.5e+02 Score=26.99 Aligned_cols=59 Identities=7% Similarity=-0.084 Sum_probs=40.3
Q ss_pred hHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhh-hHHHHHHHHHHHHH
Q 039934 156 TFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEG-LHCDFACLLYSLLR 217 (329)
Q Consensus 156 ~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~-~H~~~~~~l~~~l~ 217 (329)
.+..+++++ +.++++.--.+-..+. ..=.-|.........+--|+ +|......++..+.
T Consensus 74 ~~~~~vl~f~~~~Dsiv~~~~~~~~~---~~v~~pE~~~~~~~q~~~E~aiHs~sYs~il~tl~ 134 (350)
T 4dr0_A 74 DTYMKVLAGLTLLDTEQGNTGMPIVA---EHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLA 134 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHH---HHSCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466777775 5788887533322222 11223667777778888999 99999999999986
No 84
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A
Probab=26.48 E-value=2.7e+02 Score=22.84 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=29.7
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039934 86 FMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY 120 (329)
Q Consensus 86 ~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~ 120 (329)
.+..-..+++...+...+..|..|.+.|..+++.+
T Consensus 141 ~A~eEG~~eiA~~F~~ia~~Ek~H~~ry~~ll~~l 175 (179)
T 3qhb_A 141 LAAEQGNMEVATAFEAIVKSETKHANWVKRALENL 175 (179)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455668999999999999999999999999876
No 85
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=26.33 E-value=2.7e+02 Score=22.87 Aligned_cols=133 Identities=10% Similarity=-0.045 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 039934 92 VSEARAFYGFQIA----IENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACV 167 (329)
Q Consensus 92 ~~E~~~~~~~q~~----~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~l 167 (329)
+++...++..++. .|.-|-+ .+++.++.++++ .....-.|....=.+++.+...+ ++...+++...+
T Consensus 67 ~~~~~~~~~~~~~~~i~~E~~~h~---~~~~~~Gi~~~~----~~~~~~~p~t~aY~~~l~~~a~~--~~~~~~aAl~pc 137 (214)
T 2qzc_A 67 PIDKVTKILNLVFSSRDKGLETHG---KLYSKLDISRDV----IVKTGYNLINYAYTRHLYYYANL--DWNKFLVAWTPC 137 (214)
T ss_dssp CHHHHHHHHHHHTCC--CHHHHHH---HHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHH--CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHHH----HhhCCCChHHHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 6666666655532 3643322 335777766643 33455578777777887776544 577777777778
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHH---hhh-hhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhHhh
Q 039934 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELIS---RDE-GLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDA 243 (329)
Q Consensus 168 Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~---rDE-~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~ 243 (329)
|+++...| ..+... |+ .---+||. -+| .-|+.....++..+ ....+ +.+++..+.+.|..|-+..
T Consensus 138 ~~~Y~~ig----~~l~~~---~~-~~y~~Wi~~y~~~~f~~~v~~~~~lld~~--~~~~~-~~~~f~~a~~~E~~Fwd~a 206 (214)
T 2qzc_A 138 MFGYSIVG----DYVIDS---PN-EVYKTWASFYASTEYKKRIEAILYALDEV--SITED-LLNIFINSVRFEIGFWDAS 206 (214)
T ss_dssp HHHHHHHH----HHHTTC---SC-HHHHHHHHHHHSHHHHHHHHHHHHHHTTS--CCCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHhC---CC-ChHHHHHHHhCCHHHHHHHHHHHHHHHhC--ccHHH-HHHHHHHHHHHHHHHHHHH
Confidence 88875544 222222 44 22235553 344 46777777776655 33456 9999999999999998766
Q ss_pred c
Q 039934 244 L 244 (329)
Q Consensus 244 ~ 244 (329)
.
T Consensus 207 ~ 207 (214)
T 2qzc_A 207 L 207 (214)
T ss_dssp H
T ss_pred H
Confidence 5
No 86
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=25.10 E-value=1.3e+02 Score=27.01 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=38.6
Q ss_pred hHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHH
Q 039934 156 TFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVK 230 (329)
Q Consensus 156 ~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~ 230 (329)
.+..+++++ ++++++.--.+-.. +...=.-|-........+-.|++|+...+.++..+.. +++++.+++.
T Consensus 85 ~~~~~~l~~~~~~D~iv~~~l~~~---l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~--d~~e~~~~f~ 155 (311)
T 2o1z_A 85 HFIKHVLAFFAASDGIVLENLASK---FLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIK--DEKERMNLFH 155 (311)
T ss_dssp HHHHHHHHHHHHC-------CHHH---HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH---HHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence 356666665 56788764322111 1221122555566677789999999999999998873 3344444443
No 87
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=22.95 E-value=3e+02 Score=22.12 Aligned_cols=58 Identities=14% Similarity=0.022 Sum_probs=42.7
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccC--------CH--HHHHHHHHHHHHHHHHhhH
Q 039934 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKL--------SE--ERVKGIVKEAVEIEREFVC 241 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~--------~~--~~i~~~~~eav~~E~~~~~ 241 (329)
.+--++|++..+...+.+|.-|..-....+..+-..+ .. ..+.++++.+.+.|+..+.
T Consensus 46 ~~~gl~~~a~~f~~~a~EE~~HA~~l~e~i~~lGG~p~l~~i~~p~~~~~~~~e~le~aL~~E~~~~~ 113 (181)
T 3bvf_A 46 YTHSLDGAGLFLFDHAAEEYEHAKKLIIFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISE 113 (181)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999987666655443222 11 3477888888888887664
No 88
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=22.51 E-value=83 Score=25.23 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=41.0
Q ss_pred HHHHhcCCCcchHHHHHHHHhhhh----hHHHHHHHHHHHHHccC--C--HHHHHHHHHHHHHHHH
Q 039934 180 FWLKKRGLMPGLTFSNELISRDEG----LHCDFACLLYSLLRNKL--S--EERVKGIVKEAVEIER 237 (329)
Q Consensus 180 ~~l~~~~~l~g~~~~i~~I~rDE~----~H~~~~~~l~~~l~~~~--~--~~~i~~~~~eav~~E~ 237 (329)
.-|+++|.-|. .|-.|.||+. .....|..+.+.|.+.- + +|+.+.+++.||.+-+
T Consensus 40 ~klakkG~tpS---qIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv~lRk 102 (153)
T 2xzm_O 40 VKLAKKGLTPS---QIGVILRDQHGIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSIRK 102 (153)
T ss_dssp HHHHHTTCCHH---HHHHHHHHSSCCSCHHHHHSSCHHHHHHHTTCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHH---HhhhHHhhcCCCCCeeeeccchHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH
Confidence 35788998887 8889999994 55566667777776431 1 5889999999998654
No 89
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8
Probab=20.92 E-value=3.1e+02 Score=21.51 Aligned_cols=114 Identities=9% Similarity=0.027 Sum_probs=65.5
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-
Q 039934 89 EVQVSEARAFYGFQIAIENIHSEMYSLLLETYI-K-NSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFA- 165 (329)
Q Consensus 89 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~-~-d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~- 165 (329)
...+|+.+..+..-+.+|..|.+.+..+..... . .+.. .++ +...|.. ...+..... .+. ...+..+
T Consensus 33 ~~~~~~~k~~f~~LA~eE~~H~~~l~~~~~~~~~~~~~~~--~~~--~~~~~~~--~~~~~~~~~---~~~-~~~l~~A~ 102 (167)
T 2oh3_A 33 AHNNLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSW--QYR--WKTPPEV--GDENDIHYL---MTP-YHALRYAR 102 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCGG--GTS--CCCCCCS--SCC---CGG---GSH-HHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc--ccc--CCCcHhh--hhHhhcccc---CCH-HHHHHHHH
Confidence 778999999999999999999999888876531 1 1111 110 0000000 000001000 111 1222222
Q ss_pred H--HHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHc
Q 039934 166 C--VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRN 218 (329)
Q Consensus 166 ~--lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~ 218 (329)
- .+++-||... +..-.=|.+..++..|++||..|......++..+..
T Consensus 103 ~~E~~a~~fY~~~------a~~~~d~~~k~~~~~la~eE~~H~~~l~~~~~~~~~ 151 (167)
T 2oh3_A 103 DNEIRGMEYYKEA------AANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPR 151 (167)
T ss_dssp HHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 1 4456655444 333334789999999999999999988887766543
No 90
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=20.38 E-value=83 Score=25.19 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=40.9
Q ss_pred HHHHhcCCCcchHHHHHHHHhhhh----hHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHH
Q 039934 180 FWLKKRGLMPGLTFSNELISRDEG----LHCDFACLLYSLLRNKL----SEERVKGIVKEAVEIER 237 (329)
Q Consensus 180 ~~l~~~~~l~g~~~~i~~I~rDE~----~H~~~~~~l~~~l~~~~----~~~~i~~~~~eav~~E~ 237 (329)
+-|+++|.-|. .|-.|.||+. .....|..+.+.|.+.- =+|+.+.+++.||.+-+
T Consensus 38 ~klakkG~tpS---qIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv~lrk 100 (151)
T 3u5c_N 38 VKYARKGLTPS---QIGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRK 100 (151)
T ss_dssp HHHHTTTCCHH---HHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHH---HhhhHHhccCCCCCeeeecccHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 35788998887 8899999994 45556666777776431 15889999999998654
No 91
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=20.28 E-value=1.2e+02 Score=27.00 Aligned_cols=60 Identities=12% Similarity=-0.078 Sum_probs=41.4
Q ss_pred hHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHc
Q 039934 156 TFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRN 218 (329)
Q Consensus 156 ~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~ 218 (329)
.+..+++++ ++++++.--.+-. .+...-.-|.........+-.|++|+...+.+++.+..
T Consensus 63 ~~~~~~l~~~~~~D~iq~~~~~~---~~~~~~~~pe~~~~~~~q~~~E~iHs~sYs~il~tl~~ 123 (296)
T 3mjo_A 63 LATMRVFTGLTLLDTIQGTVGAI---SLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLAS 123 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH---HHGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH---HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 466677775 5788876433222 12222233677777888899999999999999999874
Done!