Query         039934
Match_columns 329
No_of_seqs    129 out of 1208
Neff          7.9 
Searched_HMMs 13730
Date          Mon Mar 25 05:01:48 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039934.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039934hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1jk0a_ a.25.1.2 (A:) Ribonucl 100.0   1E-77 7.3E-82  564.5  27.0  286    3-288    47-334 (334)
  2 d1w68a_ a.25.1.2 (A:) Ribonucl 100.0 4.2E-72   3E-76  516.1  34.2  279    5-283     2-281 (281)
  3 d1jk0b_ a.25.1.2 (B:) Ribonucl 100.0 7.1E-72 5.2E-76  515.3  21.8  275    2-277    10-285 (285)
  4 d1syya_ a.25.1.2 (A:) Ribonucl 100.0 4.1E-69   3E-73  503.9  32.2  281    3-286    13-317 (317)
  5 d1mxra_ a.25.1.2 (A:) Ribonucl 100.0   7E-69 5.1E-73  506.6  33.7  284    3-289    11-338 (339)
  6 d1r2fa_ a.25.1.2 (A:) Ribonucl 100.0 3.2E-62 2.3E-66  449.9  34.5  259   17-280     4-269 (283)
  7 d3dhza1 a.25.1.2 (A:14-297) Ri 100.0 2.3E-62 1.7E-66  451.3  33.1  259   16-279     5-270 (284)
  8 d2inca1 a.25.1.2 (A:2-492) Tol  98.9 6.4E-08 4.7E-12   92.3  19.5  221   54-276    82-313 (491)
  9 d1mtyd_ a.25.1.2 (D:) Methane   98.7 7.5E-07 5.4E-11   84.8  19.3  160   54-219    79-246 (512)
 10 d2incb1 a.25.1.2 (B:8-329) Tol  97.5   0.025 1.8E-06   50.0  23.5  165   53-220   103-272 (322)
 11 d1za0a1 a.25.1.2 (A:8-274) Pos  96.9   0.013 9.4E-07   50.4  15.0  174   25-222     9-202 (267)
 12 d1mtyb_ a.25.1.2 (B:) Methane   96.8   0.069 5.1E-06   48.1  19.8  213   53-269   128-360 (384)
 13 d1mhyb_ a.25.1.2 (B:) Methane   96.7   0.012   9E-07   53.2  13.4  169   52-221   125-300 (383)
 14 d1afra_ a.25.1.2 (A:) delta 9-  96.4   0.085 6.2E-06   46.5  16.9  117   94-223   113-232 (345)
 15 d2oc5a1 a.25.1.6 (A:20-241) Hy  95.8    0.33 2.4E-05   38.5  21.1  199   57-275     8-211 (222)
 16 d2fzfa1 a.25.1.1 (A:10-167) Hy  95.6   0.016 1.2E-06   44.9   7.5  137   67-217    15-153 (158)
 17 d1rcwa_ a.132.1.4 (A:) Hypothe  95.4    0.46 3.4E-05   37.8  22.1  151   85-242    54-211 (213)
 18 d1udda_ a.132.1.3 (A:) Hypothe  93.1     1.7 0.00012   34.7  16.8  151   85-244    59-212 (215)
 19 d1j30a_ a.25.1.1 (A:) Hypothet  90.5     2.4 0.00018   31.4  16.4  109   86-217    31-139 (141)
 20 d1otka_ a.25.1.2 (A:) Phenylac  87.2     6.9  0.0005   32.2  19.9  175   86-275    26-211 (244)
 21 d1vjxa_ a.25.1.1 (A:) Hypothet  86.1    0.76 5.5E-05   34.5   6.4  119   85-214    27-146 (149)
 22 d1lkoa1 a.25.1.1 (A:2-147) Rub  84.5     6.1 0.00045   29.2  13.2  110   85-218    31-143 (146)
 23 d1z72a1 a.132.1.3 (A:4-220) Pu  81.8      10 0.00074   29.8  19.9  145   85-241    64-214 (217)
 24 d1zpya1 a.25.1.5 (A:4-94) Hypo  80.6     6.9  0.0005   27.0  10.9   67   54-125     8-74  (91)
 25 d1yuza1 a.25.1.1 (A:23-157) Ni  79.9     8.8 0.00064   27.8  13.4  101   85-208    30-133 (135)
 26 d1nf4a_ a.25.1.1 (A:) Bacterio  79.7      11 0.00077   28.6  14.0  110   88-217    35-144 (169)
 27 d2fzfa1 a.25.1.1 (A:10-167) Hy  78.5      10 0.00074   27.7  10.5   59  182-240    33-112 (158)
 28 d1jkva_ a.25.1.3 (A:) Manganes  78.5      12 0.00089   31.0  11.6  117   93-217    53-193 (266)
 29 d1za0a1 a.25.1.2 (A:8-274) Pos  75.5     7.3 0.00054   32.5   9.4   38   84-121   160-197 (267)
 30 d1nnqa1 a.25.1.1 (A:2-134) Rub  73.2      14   0.001   26.9  15.4  101   84-218    29-129 (133)
 31 d1zpya1 a.25.1.5 (A:4-94) Hypo  69.3     9.4 0.00068   26.3   7.0   55  156-216    16-71  (91)
 32 d2oh3a1 a.25.1.8 (A:3-154) Unc  67.9      12  0.0009   27.1   8.5  115   88-216    29-146 (152)
 33 d2htna1 a.25.1.1 (A:1-158) Bac  65.9      22  0.0016   26.1  13.0  110   88-217    33-142 (158)
 34 d1euma_ a.25.1.1 (A:) Non-hem   65.8      21  0.0016   26.6   9.6   60  181-241    29-98  (161)
 35 d1lkoa1 a.25.1.1 (A:2-147) Rub  61.2       5 0.00037   29.7   4.8   34  183-216    33-66  (146)
 36 d1yuza1 a.25.1.1 (A:23-157) Ni  59.9      18  0.0013   26.0   7.8   36  183-218    32-67  (135)
 37 d1jkva_ a.25.1.3 (A:) Manganes  59.4     9.7 0.00071   31.7   6.7   37   84-120   156-192 (266)
 38 d2gm8a1 a.132.1.3 (A:2-212) Te  56.4      39  0.0028   25.9  18.9  149   85-244    55-208 (211)
 39 d1to9a_ a.132.1.3 (A:) Transcr  56.1      41   0.003   26.1  22.2  149   85-244    56-212 (225)
 40 d1nf4a_ a.25.1.1 (A:) Bacterio  53.1      14   0.001   27.8   6.4   58  184-241    35-101 (169)
 41 d2cwla1 a.25.1.3 (A:1-299) Man  51.9      13 0.00096   31.3   6.3   70   37-121   131-200 (299)
 42 d1afra_ a.25.1.2 (A:) delta 9-  47.7      44  0.0032   28.5   9.2   41   85-125   190-231 (345)
 43 d1jgca_ a.25.1.1 (A:) Bacterio  46.6      50  0.0036   24.2   9.9   58  184-241    33-99  (160)
 44 d2oh3a1 a.25.1.8 (A:3-154) Unc  45.2      47  0.0034   23.6   8.5   37   84-120   110-146 (152)
 45 d1krqa_ a.25.1.1 (A:) Non-hem   43.7      57  0.0042   24.1   9.1   59  182-241    31-99  (165)
 46 d1j30a_ a.25.1.1 (A:) Hypothet  41.2      19  0.0014   26.0   5.2   35  183-217    32-66  (141)
 47 d1vjxa_ a.25.1.1 (A:) Hypothet  35.5      68  0.0049   22.6   8.4   35   84-118   112-146 (149)
 48 d1rtwa_ a.132.1.3 (A:) Putativ  34.0      89  0.0065   23.5  19.6  145   85-242    56-204 (206)
 49 d2f2ga1 a.132.1.3 (A:5-219) Se  33.8      92  0.0067   23.6  19.7  132  104-244    79-214 (215)
 50 d2htna1 a.25.1.1 (A:1-158) Bac  33.8      59  0.0043   23.5   7.1   57  184-240    33-98  (158)
 51 d2fkza1 a.25.1.1 (A:1-154) Bac  32.9      80  0.0058   22.6  14.0  110   88-217    33-142 (154)
 52 d1rcda_ a.25.1.1 (A:) (Apo)fer  30.6      97  0.0071   22.9   9.6   61  181-241    35-107 (171)
 53 d1vlga_ a.25.1.1 (A:) Non-hem   30.3      95  0.0069   22.7   9.4   58  183-241    34-101 (164)
 54 d1rh5c_ f.23.29.1 (C:) Sec-bet  26.4      11 0.00078   19.8   0.9   17  160-176    16-32  (32)
 55 d1nnqa1 a.25.1.1 (A:2-134) Rub  25.8      62  0.0045   23.0   5.8   36   85-120    92-127 (133)
 56 d2fkza1 a.25.1.1 (A:1-154) Bac  22.8 1.2E+02  0.0089   21.4   9.6   57  184-240    33-98  (154)
 57 d1b0na1 a.34.1.1 (A:74-108) Si  21.7      32  0.0023   18.7   2.3   15  249-263    15-29  (35)
 58 d1jgca_ a.25.1.1 (A:) Bacterio  20.3 1.4E+02   0.011   21.3  12.3  110   88-217    33-142 (160)
 59 d2ib0a1 a.25.1.9 (A:17-158) Hy  20.2 1.4E+02  0.0099   21.0   8.5   46   73-119    89-134 (142)

No 1  
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Probab=100.00  E-value=1e-77  Score=564.49  Aligned_cols=286  Identities=63%  Similarity=1.066  Sum_probs=276.7

Q ss_pred             CCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 039934            3 SIPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWE-SLTADEKHFITHVLAFFAASDGIVLEN   81 (329)
Q Consensus         3 ~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~-~L~~~er~~~~~~l~~~~~~d~~v~~~   81 (329)
                      .+++|+||.+|+.|++++||+|||+|++|+++.++||+|+|||+++|+.||+ +||+.||++++++|++|+++|++|+++
T Consensus        47 ~~~~e~~l~~~~~r~~~~PikY~~~~~~Ykk~~~~fW~peEIdls~D~~dw~~~Lt~~Er~~i~~il~ffa~~D~~v~~~  126 (334)
T d1jk0a_          47 MEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNEN  126 (334)
T ss_dssp             HGGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHHTCCHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred             hhcCCcccCCCCCceeEeCCcCHHHHHHHHHHHHcCCCchhccCcCCHHHHhhcCCHHHHHHHHHHHHHHHhhhHHHHhH
Confidence            5789999999999999999999999999999999999999999999999996 699999999999999999999999999


Q ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCC-hhHHHH
Q 039934           82 LAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGS-ETFAER  160 (329)
Q Consensus        82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~-~~~~~~  160 (329)
                      +...+++.++.||+++++++|+++|+||+++||+++++++.|+.++..+|+++.+.|.+++|++|+.+++.+. ..+.++
T Consensus       127 l~~~~~~~v~~pE~~~~~~~q~~~E~IHsesYS~ii~tl~~d~~e~~~lf~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~  206 (334)
T d1jk0a_         127 LVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGER  206 (334)
T ss_dssp             HCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred             HHHhhhHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHCHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            9878999999999999999999999999999999999999999999999999999999999999999999654 458899


Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhh
Q 039934          161 LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFV  240 (329)
Q Consensus       161 lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~  240 (329)
                      +++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+++++.|++++++||++|.+|+
T Consensus       207 lva~~~lEgi~F~ssFa~~~~l~~~g~m~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~i~~i~~eAvelE~~~~  286 (334)
T d1jk0a_         207 LVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYF  286 (334)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHhhhhhHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhhhh
Q 039934          241 CDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWMEL  288 (329)
Q Consensus       241 ~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~  288 (329)
                      .++++.+++|||.+.+++||+|+||+||.+||++|+|+++||+|||+.
T Consensus       287 ~~~~~~~~~Gln~~~~~~YI~y~Anr~L~~LG~~~~f~~~NP~~wme~  334 (334)
T d1jk0a_         287 LDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMEN  334 (334)
T ss_dssp             HTTSCGGGGTCCHHHHHHHHHHHHHHHHHTTTCCCSSCCCCCCGGGGC
T ss_pred             HHhCCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCcccc
Confidence            999999999999999999999999999999999999999999999973


No 2  
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=4.2e-72  Score=516.15  Aligned_cols=279  Identities=70%  Similarity=1.196  Sum_probs=269.6

Q ss_pred             CCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039934            5 PEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAA   84 (329)
Q Consensus         5 ~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~   84 (329)
                      ++|+||++|++|++++|++|||+|++|++++++||.|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.+
T Consensus         2 ~~e~~l~~~~~r~~~~PikY~~~~~~y~~~~~~fW~peEi~ls~D~~dw~~L~~~Er~~~~~~l~~~~~~D~~v~~~~~~   81 (281)
T d1w68a_           2 EDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVE   81 (281)
T ss_dssp             TTCTTTSCCGGGGCCCSCSCHHHHHHHHHHHHTCCCGGGSCCGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCCceeeeCCcCHHHHHHHHHHHHcCCCchhccchhhHHHHHhCCHHHHHHHHHHHHHHHhhhhHHhhhhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC-ChhHHHHHHH
Q 039934           85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG-SETFAERLIA  163 (329)
Q Consensus        85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~-~~~~~~~lv~  163 (329)
                      .+++.++.||+++++++|+++|+||++|||+++++++.|+.++...++++...|.+++|+.++..+..+ ...+.+++++
T Consensus        82 ~~~~~~~~~e~~~~~~~~~~~E~iH~~sYs~il~t~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  161 (281)
T d1w68a_          82 RFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVA  161 (281)
T ss_dssp             THHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTGGGTCHHHHHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred             hhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhHHHHHHHHHHHhhhccccchHHHHHHH
Confidence            899999999999999999999999999999999999999998888999999999999999999887754 4568889999


Q ss_pred             HHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhHhh
Q 039934          164 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDA  243 (329)
Q Consensus       164 ~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~  243 (329)
                      ++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++++.++.+++.+++++++||++|.+|+.+.
T Consensus       162 ~~~~Egi~f~s~F~~~~~~~~~g~m~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~e~~~~~v~~~~~~av~lE~~~~~~~  241 (281)
T d1w68a_         162 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEA  241 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCc
Q 039934          244 LPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPF  283 (329)
Q Consensus       244 ~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~  283 (329)
                      ++.+++|||.+.+++||+|+||+||++||++|+|+++||+
T Consensus       242 ~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~NPf  281 (281)
T d1w68a_         242 LPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPF  281 (281)
T ss_dssp             SCGGGGTCCHHHHHHHHHHHHHHHHHHHTSCCSSCCCCCC
T ss_pred             CCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcC
Confidence            9888999999999999999999999999999999999996


No 3  
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Probab=100.00  E-value=7.1e-72  Score=515.26  Aligned_cols=275  Identities=44%  Similarity=0.803  Sum_probs=244.6

Q ss_pred             CCCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 039934            2 PSIPEEPLLTPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLEN   81 (329)
Q Consensus         2 ~~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~   81 (329)
                      +.|++|+||.+|++||+++|++|||+|++|+++.++||.|+|||+++|++||++||+.||++++++|++|+.+|++|+++
T Consensus        10 ~~~~~e~~l~e~~~r~~l~Piky~~~~~~y~~~~~~fW~peEi~l~~D~~d~~~Lt~~Ek~~~~~~l~~f~~~D~~v~~~   89 (285)
T d1jk0b_          10 EAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKY   89 (285)
T ss_dssp             HHTTTCTTTSCCTTCCSCCSCSCHHHHHHHHHHHHTCCCGGGCCCTTTSTTTTTSCTTHHHHHHHHHHHHC---------
T ss_pred             hhccCCCccCCCCCceeeeCCcCHHHHHHHHHHHHcCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCh-hHHHH
Q 039934           82 LAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSE-TFAER  160 (329)
Q Consensus        82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~-~~~~~  160 (329)
                      +.+.+++.++.||+++++++|+++|+||+++||+++++++.||+ +.++|+++.++|.+++|++|+.++++++. .+.++
T Consensus        90 ~~~~i~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~~l~~~~e-~~~~f~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~  168 (285)
T d1jk0b_          90 LIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPK-NIPLFKEIANLPEVKHKAAFIERWISNDDSLYAER  168 (285)
T ss_dssp             CHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCT-TSCSGGGGCSCHHHHHHHHHHHHTTSSSSCCHHHH
T ss_pred             hHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChH-HHHHHHHHhhcHHHHHHhhhhhhhcccchhHHHHH
Confidence            98889999999999999999999999999999999999988874 34679999999999999999999987554 47889


Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhh
Q 039934          161 LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFV  240 (329)
Q Consensus       161 lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~  240 (329)
                      +++++++||++|+|||+++++|+++|+|||+++++++|+|||++|+.|++.+++.+..+++++.|++++++||++|.+|+
T Consensus       169 ~i~~~~~Egi~f~s~Fa~~~~l~~~~~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~i~~l~~eAv~lE~~~~  248 (285)
T d1jk0b_         169 LVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYY  248 (285)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcchhHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 039934          241 CDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVY  277 (329)
Q Consensus       241 ~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y  277 (329)
                      +++++.+++|||.+++++||+|+||+||.+||++|+|
T Consensus       249 ~~~~~~~~~Gl~~~~~~~Yi~y~an~~L~~lG~~~~y  285 (285)
T d1jk0b_         249 SNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYY  285 (285)
T ss_dssp             TTSCC-----------CTHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHcCCCcCCCCHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            9999999999999999999999999999999999987


No 4  
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]}
Probab=100.00  E-value=4.1e-69  Score=503.90  Aligned_cols=281  Identities=27%  Similarity=0.528  Sum_probs=260.8

Q ss_pred             CCCCCCCCCCCCCC-ccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHH
Q 039934            3 SIPEEPLLTPNPDR-FCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWES--LTADEKHFITHVLAFFAASDGIVL   79 (329)
Q Consensus         3 ~~~~e~il~~~~~~-~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~--L~~~er~~~~~~l~~~~~~d~~v~   79 (329)
                      ..++++|++|++.. .+++|++|||+|++|+++.++||+|+|||+++|+.||++  ||+.||+.++++|++|+.+|++|+
T Consensus        13 ~~~~~~~~~~~~~~~~~l~p~kYp~~~~~yk~~~~~fW~peEi~ls~D~~dw~~~kL~~~e~~~~~~~l~~~~~~d~~v~   92 (317)
T d1syya_          13 NLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVG   92 (317)
T ss_dssp             CGGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccceeeCCCCCchhhcCCCCCHHHHHHHHHHHHcCCCccccCccccHHHHhhCCCCHHHHHHHHHHHHHHHHHhhHHh
Confidence            45678999999975 599999999999999999999999999999999999975  999999999999999999999999


Q ss_pred             hHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC------
Q 039934           80 ENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG------  153 (329)
Q Consensus        80 ~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~------  153 (329)
                      +++...+++.++.||+++++++|+++|+||+++||+++++++.|++   ++|+++.++|.+++|++++..++..      
T Consensus        93 ~~~~~~l~~~i~~pE~~~~~~~q~~~E~iH~~sYs~il~~l~~d~~---e~~~~~~~~~~i~~k~~~~~~~~~~~~~~~~  169 (317)
T d1syya_          93 NNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEK---EIFNAYNERAAIKAKDDFQMEITGKVLDPNF  169 (317)
T ss_dssp             HHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH---HHTTHHHHCHHHHHHHHHHHHTTSGGGSTTC
T ss_pred             hhhHhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH---HHHHHHhhHHHHHHHHHHHHHHHhhhccccc
Confidence            9998899999999999999999999999999999999999988886   5789999999999999999887641      


Q ss_pred             -------ChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC----
Q 039934          154 -------SETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS----  221 (329)
Q Consensus       154 -------~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~----  221 (329)
                             ...++.+++++. ++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++.+    
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~lEgi~F~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~e~~e~~~  249 (317)
T d1syya_         170 RTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWT  249 (317)
T ss_dssp             CSSSHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhhHHHHhhHHHHHHHHHhhhhHHHHh
Confidence                   123556666654 78999999999999999999999999999999999999999999999999987654    


Q ss_pred             ---HHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhh
Q 039934          222 ---EERVKGIVKEAVEIEREFVCDALPCALVGMNGALMSQYIEFVADRLLGALGCGKVYGVTNPFDWM  286 (329)
Q Consensus       222 ---~~~i~~~~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~  286 (329)
                         .++|++++++||++|.+|++++++.+++|||.+++++||+|+||+||.+||++|+|+++||+|||
T Consensus       250 ~~~~~~i~el~~eav~~E~~~~~~~~~~~~~Gl~~~~l~~Yv~y~an~~L~~LG~~~~f~~~NP~~wm  317 (317)
T d1syya_         250 PELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWM  317 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCSCTTC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Confidence               46799999999999999999999888999999999999999999999999999999999999997


No 5  
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=7e-69  Score=506.59  Aligned_cols=284  Identities=23%  Similarity=0.364  Sum_probs=261.6

Q ss_pred             CCCCCCCCCCCCCC-ccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 039934            3 SIPEEPLLTPNPDR-FCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLEN   81 (329)
Q Consensus         3 ~~~~e~il~~~~~~-~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~   81 (329)
                      .+..|+|++|++.+ ..+.|++|||+|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|+++
T Consensus        11 ~~~~~~~~~g~~~~~~~~~~~ky~~~~~ly~~~~~~fW~p~Ei~ls~D~~dw~~L~~~Ek~~~~~~l~~f~~~D~~v~~~   90 (339)
T d1mxra_          11 DQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRS   90 (339)
T ss_dssp             CTTSSCSBSSSCCCSCCCSCCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCCCCcccCCccccHHHHHHHHHHHhCCCCcccccchhhHHHHHHCCHHHHHHHHHHHHHHHHhhHHHhcc
Confidence            35568999999976 47889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC--------
Q 039934           82 LAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDG--------  153 (329)
Q Consensus        82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~--------  153 (329)
                      +++.+++.++.||+++++++|+++|+||+++||+++++++.||+   ++|+++.++|.+++|+.++..+++.        
T Consensus        91 ~~~~~~~~~~~pE~~~~~~~q~~~E~iH~~sYs~il~~l~~d~~---~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~  167 (339)
T d1mxra_          91 PNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEQIQKRAEGISSYYDELIEMTSYW  167 (339)
T ss_dssp             HHHHTGGGBCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHH---HHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHhcHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999999998876   4799999999999998877665531        


Q ss_pred             ----------------------ChhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHH
Q 039934          154 ----------------------SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL  211 (329)
Q Consensus       154 ----------------------~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~  211 (329)
                                            ...+++++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lEGi~f~ssF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~  247 (339)
T d1mxra_         168 HLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQH  247 (339)
T ss_dssp             HHHCSEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccccccHHHHHHHHHhhhHHHHHHHHH
Confidence                                  1246778888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCC-----------HHHHHHHHHHHHHHHHHhhHhhc-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 039934          212 LYSLLRNKLS-----------EERVKGIVKEAVEIEREFVCDAL-PCALVGMNGALMSQYIEFVADRLLGALGCGKVYGV  279 (329)
Q Consensus       212 l~~~l~~~~~-----------~~~i~~~~~eav~~E~~~~~~~~-~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~  279 (329)
                      +++.++++.+           .++|++++++||++|.+|+++++ +++++|||++++++||+|+||+||.+||++|+|++
T Consensus       248 l~~~l~~~~~~~~~~~~~~e~~~~i~~~~~eave~E~~~~~~~~~~~~l~Gl~~~~~~~yi~y~an~~L~~lG~~~~f~~  327 (339)
T d1mxra_         248 MLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQT  327 (339)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHHHHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred             HHHHHHhcCChhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            9999987643           13599999999999999999999 55899999999999999999999999999999986


Q ss_pred             -CCCchhhhhh
Q 039934          280 -TNPFDWMELI  289 (329)
Q Consensus       280 -~nP~~w~~~~  289 (329)
                       .||+|||+.+
T Consensus       328 ~~NP~~w~~~~  338 (339)
T d1mxra_         328 RSNPIPWINTW  338 (339)
T ss_dssp             CCCSCGGGGGT
T ss_pred             CCCChHHHHhh
Confidence             5999999865


No 6  
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]}
Probab=100.00  E-value=3.2e-62  Score=449.90  Aligned_cols=259  Identities=22%  Similarity=0.296  Sum_probs=239.4

Q ss_pred             ccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHH
Q 039934           17 FCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEAR   96 (329)
Q Consensus        17 ~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~   96 (329)
                      .+.+.++|++.+++|+|++++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.+.+++.++.||++
T Consensus         4 ~nwn~~~d~~~~~~y~k~~~~fW~peEi~l~~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~~~~E~~   83 (283)
T d1r2fa_           4 INWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEE   83 (283)
T ss_dssp             CCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCSSHHHH
T ss_pred             ccCCCCCcHHHHHHHHHHHhCCCCCcccChHhhHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHccchhhhhhhcccHHHH
Confidence            35567899999999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhHH
Q 039934           97 AFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSF  176 (329)
Q Consensus        97 ~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~s~F  176 (329)
                      +++++|+++|+||+++||+++++++ ++.++.++|+++.++|.+++|++|+.+++.++..+ .++++++++||++|||||
T Consensus        84 ~~~~~q~~~E~iH~~~Ys~il~~l~-~~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~l-~~~i~~~~lEGi~F~s~F  161 (283)
T d1r2fa_          84 AVLSNISFMEAVHARSYSSIFSTLC-QTKEVDAAYAWSEENPPLQRKAQIILAHYVSDEPL-KKKIASVFLESFLFYSGF  161 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHhhhHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHHHHHHhhH
Confidence            9999999999999999999999995 67778899999999999999999999999877665 566778899999999999


Q ss_pred             HHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCH-------HHHHHHHHHHHHHHHHhhHhhcCCCCC
Q 039934          177 CAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSE-------ERVKGIVKEAVEIEREFVCDALPCALV  249 (329)
Q Consensus       177 ~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~-------~~i~~~~~eav~~E~~~~~~~~~~~~~  249 (329)
                      +++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+.+.       +.++++++++|++|.+|+++.++..  
T Consensus       162 ~~~~~~~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~e~~~~~~~~~~~~v~~~~~e~v~~E~~~~~~~~~~~--  239 (283)
T d1r2fa_         162 WLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALYAET--  239 (283)
T ss_dssp             HHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT--
T ss_pred             HHHHHHHHcCcchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcC--
Confidence            9999999999999999999999999999999999999999988774       3588999999999999999877432  


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 039934          250 GMNGALMSQYIEFVADRLLGALGCGKVYGVT  280 (329)
Q Consensus       250 Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~  280 (329)
                      |+ .+++++||+|+||+||++||++|+|+++
T Consensus       240 ~~-~~~~~~yiky~an~~L~~lG~~~~f~~~  269 (283)
T d1r2fa_         240 GW-VNDVKAFLCYNANKALMNLGYEALFPPE  269 (283)
T ss_dssp             SC-HHHHHHHHHHHHHHHHHHTTCCCCSCTT
T ss_pred             CC-HHHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence            23 4679999999999999999999999763


No 7  
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=100.00  E-value=2.3e-62  Score=451.30  Aligned_cols=259  Identities=21%  Similarity=0.314  Sum_probs=243.0

Q ss_pred             CccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHH
Q 039934           16 RFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEA   95 (329)
Q Consensus        16 ~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~   95 (329)
                      ..+++.++|++.+++|+|++++||+|+|||+++|++||++||+.||+.++++|++|+.+|++|++++...+++.++.||+
T Consensus         5 ~~nwn~~~~~~~~~~y~k~~~~fW~peEi~l~~D~~d~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~~~~~~~~~E~   84 (284)
T d3dhza1           5 AINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHE   84 (284)
T ss_dssp             CCCTTSCSSHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHTGGGCSSHHH
T ss_pred             CcCCCCCCcHHHHHHHHHHHhCCCCccccChHhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHccCccccccccCCHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhH
Q 039934           96 RAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGS  175 (329)
Q Consensus        96 ~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~s~  175 (329)
                      ++++++|+++|+||+++||+++++++.+| ++.++|+++.++|.+++|++|+.++++++.. .+++++++++||++||||
T Consensus        85 ~~~~~~q~~~E~iH~~sYs~i~~~~~~~~-~~~~~~~~~~~~~~i~~k~~~~~~~~~~~~~-~~~~va~~~~EGi~F~s~  162 (284)
T d3dhza1          85 EAVYTNIAFMESVHAKSYSNIFMTLASTP-QINEAFRWSEENENLQRKAKIIMSYYNGDDP-LKKKVASTLLESFLFYSG  162 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHCHHHHHHHHHHHHHHTSSCH-HHHHHHHHHHHHTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999997665 5678999999999999999999999986654 577788899999999999


Q ss_pred             HHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCH-------HHHHHHHHHHHHHHHHhhHhhcCCCC
Q 039934          176 FCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSE-------ERVKGIVKEAVEIEREFVCDALPCAL  248 (329)
Q Consensus       176 F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~-------~~i~~~~~eav~~E~~~~~~~~~~~~  248 (329)
                      |+++++|+++|+|||+++++++|+|||++|+.||+.+++.++++.++       ++|++++.+||++|++|++++++.  
T Consensus       163 F~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~e~~~~~~~e~~~~i~~~~~~ave~E~~~~~~~~~~--  240 (284)
T d3dhza1         163 FYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDD--  240 (284)
T ss_dssp             HHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            99999999999999999999999999999999999999999998874       458889999999999999999854  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 039934          249 VGMNGALMSQYIEFVADRLLGALGCGKVYGV  279 (329)
Q Consensus       249 ~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~  279 (329)
                      .|++. ++++||+|+||+||++||++|+|++
T Consensus       241 ~gl~~-~~~~yiky~an~~L~~lG~~~~f~~  270 (284)
T d3dhza1         241 LGWTE-DVKRFLRYNANKALNNLGYEGLFPT  270 (284)
T ss_dssp             TTCHH-HHHHHHHHHHHHHHHHTTCCCSSCG
T ss_pred             cCcHH-HHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            79985 6999999999999999999999985


No 8  
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]}
Probab=98.87  E-value=6.4e-08  Score=92.28  Aligned_cols=221  Identities=14%  Similarity=0.044  Sum_probs=138.2

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 039934           54 ESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRA  133 (329)
Q Consensus        54 ~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~  133 (329)
                      +.+++.-++.++..++.+.-++-.-.... ..+.+.++.++++..+..|+.+|.+|+....++...+..++..-......
T Consensus        82 ~~~dprw~~~Lk~~Ls~i~~~Ey~A~~~~-A~l~r~ap~~~~r~aaa~Q~lDElRHaQ~~~~l~~~~~~~~~~~d~~~k~  160 (491)
T d2inca1          82 DRADPGWVSTMQLHFGAIALEEYAASTAE-ARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHKA  160 (491)
T ss_dssp             GTSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGCGGGGHHHHG
T ss_pred             ccCCHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchHHHHH
Confidence            34677778889999999888886654444 46889999999999999999999999999888888775433211111122


Q ss_pred             -HhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHH
Q 039934          134 -FETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL  211 (329)
Q Consensus       134 -~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~  211 (329)
                       ..++|..+.--..+.+.+.+ ....+..++.. ++|.++=-..|..+-..+..+-=|-+.+++..|++||++|+.+|..
T Consensus       161 ~~~~~~~~~~~R~~~Ed~l~~-~dw~e~~val~~v~E~~~tnL~~v~f~~~Aa~ngD~l~~tv~~siqsDEaRH~~~~~~  239 (491)
T d2inca1         161 IHTNEWAAIAARSFFDDMMMT-RDSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQGGP  239 (491)
T ss_dssp             GGSCCHHHHHHHHHHHHHTTS-SCHHHHHHHCCCCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             hcccCcccHHHHHHHHHHhhc-CCHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhccChhHHHHHHHhhhHHHhhhhccHH
Confidence             34455543322233333332 34678888875 5785422222323333344444477899999999999999999999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHHHh--------hHhhcCCCCCCCC-HHHHHHHHHHHHHHHHHHcCCCCC
Q 039934          212 LYSLLRNKLSEERVKGIVKEAVEIEREF--------VCDALPCALVGMN-GALMSQYIEFVADRLLGALGCGKV  276 (329)
Q Consensus       212 l~~~l~~~~~~~~i~~~~~eav~~E~~~--------~~~~~~~~~~Gl~-~~~~~~yi~y~an~~l~~lG~~~~  276 (329)
                      +++.|.+..+.+.+...++.+.=.=-++        .++..+...=-.+ ++-+.+++--.-=++|..+|++++
T Consensus       240 ~l~~l~e~~~~~~~Q~~vd~~fWr~~r~~~~l~G~~mdY~~p~~~r~~s~ke~~~ew~~~~~~~~L~~yGl~~P  313 (491)
T d2inca1         240 SLKILVENGKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKP  313 (491)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTSCGGGCCSCHHHHHHHHTHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999987766555554444332211111        1222221111234 244444443333357889999986


No 9  
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=98.65  E-value=7.5e-07  Score=84.80  Aligned_cols=160  Identities=11%  Similarity=-0.040  Sum_probs=104.0

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCcHHHHHH
Q 039934           54 ESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEM---YSLLLETYIKNSDEKSRL  130 (329)
Q Consensus        54 ~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~s---Ys~il~~~~~d~~e~~~~  130 (329)
                      .++++.-.+.++..++.+..++-.-... .+.+.+.++.++++.++++|+++|++|+..   |++.+..-+.++.--...
T Consensus        79 ~~~d~~wl~~lk~~ls~~~hgE~gA~l~-~A~l~r~apt~~ak~~aa~Qt~DE~RH~q~~a~~~~~l~~~~~d~~~~~~~  157 (512)
T d1mtyd_          79 VRVHPKWNETMKVVSNFLEVGEYNAIAA-TGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDA  157 (512)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTTTTH
T ss_pred             ccCCHHHHHHHHHHhcccCHHHHHHHHH-HHHHHHhCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcchhhhh
Confidence            4577777788888888888887544333 347889999999999999999999999999   444444333343210111


Q ss_pred             HHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHH----HHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhH
Q 039934          131 FRAFETVPCVAKKADWALNWIDGSETFAERLIAFA-CVE----GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLH  205 (329)
Q Consensus       131 ~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lE----gi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H  205 (329)
                      ..+...+|.-+.--..+.+.+.+ ....+.++++. ++|    +++ +++|......  +|= +-+.+.+..|++||++|
T Consensus       158 r~~~~~~Pi~q~~r~lfed~l~~-~Dw~e~~ial~~v~E~~ftnL~-fv~f~~~Aa~--nGD-~~~~tl~~SiqsDEaRH  232 (512)
T d1mtyd_         158 RRTRTIGPLWKGMKRVFSDGFIS-GDAVECSLNLQLVGEACFTNPL-IVAVTEWAAA--NGD-EITPTVFLSIETDELRH  232 (512)
T ss_dssp             HHHGGGSSHHHHHHHHHTHHHHS-SCHHHHHHHHTTTHHHHTHHHH-HHHHHHHHHH--TTC-CHHHHHHHHHHHHHHHH
T ss_pred             hhhhccCchhHHHHHHHHHHHhc-CCHHHHHHhhhhhhhhcccHHH-HHHHHHHHHH--ccC-ccHHHHHHHHHhhHhhh
Confidence            23445566432211222222222 23567778875 689    444 3445444333  332 77888999999999999


Q ss_pred             HHHHHHHHHHHHcc
Q 039934          206 CDFACLLYSLLRNK  219 (329)
Q Consensus       206 ~~~~~~l~~~l~~~  219 (329)
                      ...|...+..+..+
T Consensus       233 ~~~g~~tL~~~l~~  246 (512)
T d1mtyd_         233 MANGYQTVVSIAND  246 (512)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             hhhhHHHHHHHHhc
Confidence            99998877555544


No 10 
>d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase oxygenase subunit TouE {Pseudomonas stutzeri [TaxId: 316]}
Probab=97.46  E-value=0.025  Score=50.04  Aligned_cols=165  Identities=10%  Similarity=-0.047  Sum_probs=111.8

Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCcHHHHH
Q 039934           53 WESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY---IKNSDEKSR  129 (329)
Q Consensus        53 ~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~---~~d~~e~~~  129 (329)
                      +..|++.-++.++..++.+...+-....+.+ .+....+.+.++.+..+|+++|-+|+.-.+++...+   ..|+..-..
T Consensus       103 ~~~l~~~w~~~l~~~l~p~r~~E~ga~~~~a-~~~r~~~~~~i~~~~~~qa~D~lR~aQ~~~~~~~~L~~~~~d~~~~~~  181 (322)
T d2incb1         103 DQMLTREWVETLARFYTPARYLFHALQMGSV-YIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKR  181 (322)
T ss_dssp             GGGSCHHHHHHHHHHTTTHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTS
T ss_pred             hhcCCHHHHHHHHHHHhhhhHHHHHHHHhHH-HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHH
Confidence            3458888888888888888777755544443 577888999999999999999999988666665544   233310000


Q ss_pred             HHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHH-HhcCCCcchHHHHHHHHhhhhhHHH
Q 039934          130 LFRAFETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCD  207 (329)
Q Consensus       130 ~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l-~~~~~l~g~~~~i~~I~rDE~~H~~  207 (329)
                      -=..|.++|..+-=-+++.+.+-. .++.+.+++.. ++|+++--.-|.-+... +.+|= ..+..++..+..||.+|..
T Consensus       182 ~k~~W~~dp~WQ~~R~~vE~~l~~-~Dw~E~~vA~nlv~e~l~~~l~~~~l~~~A~~nGD-~~t~~l~~s~~~D~~r~~~  259 (322)
T d2incb1         182 ERDVWENDPAWQGFRELIEKALIA-WDWGEAFTAINLVTKPAVEEALLQQLGSLAQSEGD-TLLGLLAQAQKRDAERHRR  259 (322)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHTTC-CSHHHHHHHHHTTHHHHHHHHHTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcchHHHHHHHHHHhhc-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHHHH
Confidence            112577888766544455444432 24778888875 67887543333333333 23332 4577788999999999999


Q ss_pred             HHHHHHHHHHccC
Q 039934          208 FACLLYSLLRNKL  220 (329)
Q Consensus       208 ~~~~l~~~l~~~~  220 (329)
                      .+..+++.+.+.+
T Consensus       260 w~~alvk~~~e~~  272 (322)
T d2incb1         260 WSSALVKMALEKE  272 (322)
T ss_dssp             HHHHHHHHHTTST
T ss_pred             HHHHHHHHHhcCh
Confidence            9999999877543


No 11 
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=96.92  E-value=0.013  Score=50.42  Aligned_cols=174  Identities=19%  Similarity=0.067  Sum_probs=94.8

Q ss_pred             hHHHHHHHHHH--hCCCCCCccCc-cc-------cHHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHH
Q 039934           25 PEIWEMYKKAE--ASFWTAEEVDL-SQ-------DIRQW----ESLTADEKHFITHVLAFFAASDGIVLENLAA---RFM   87 (329)
Q Consensus        25 ~~~~~ly~k~~--~~fW~p~eid~-~~-------D~~~~----~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~---~~~   87 (329)
                      |++.+...+..  +.-|.|.++=. ++       ...+|    .+||+.-+.++..        +.+..+++..   .+.
T Consensus         9 ~~~e~~~~~hl~~~~~W~p~d~lP~~~~~~f~~~~~~~~~~~~~~l~~~~~~alv~--------~lltEdnLP~Y~~~l~   80 (267)
T d1za0a1           9 PVVEANMTRHLDTEDIWFAHDYVPFDQGENFAFLGGRDWDPSQSTLPRTITDACEI--------LLILKDNLAGHHRELV   80 (267)
T ss_dssp             HHHHHHHHHHHHTCCCCCGGGGCCGGGCCCCGGGTSCCCCGGGCCSCHHHHHHHHH--------HHHHHHC---------
T ss_pred             HHHHHHHHHhhhhhhccCccccCCCCCCCCccccCcccCChhhccCchhHHHHHHh--------hhhcccCCcHHHHHHH
Confidence            34444444433  46799987644 22       22355    2588887776653        3333344421   122


Q ss_pred             hhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHhhcHHHHHHHHHHHHhhc-CChhHHHHHHHH
Q 039934           88 KEV-QVSEARAFYGFQIAIENIHSEMYSLLLETYI-KNSDEKSRLFRAFETVPCVAKKADWALNWID-GSETFAERLIAF  164 (329)
Q Consensus        88 ~~~-~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~-~~~~~~~~lv~~  164 (329)
                      ..+ .++....|.....++|+.|..+-.+++..-. -||..   +...  ....+.       +-++ ...+-...++.-
T Consensus        81 ~~f~~d~~w~~wv~~WtaEEnrHg~aL~~YL~lsg~vDp~~---~e~~--~~~~~~-------~G~~~~~~~p~~~l~y~  148 (267)
T d1za0a1          81 EHFILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVA---NEDV--RVQHVM-------KGYRAEKYTQVETLVYM  148 (267)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTT---TTCT--TC-----------------CCCHHHHHHHH
T ss_pred             HHhccchHHHHHHhcccHHHhhHHHHHHHHHHHhccCChhH---hHHH--HHHHHH-------hccCCCCCchHHHHHHH
Confidence            211 2356777889999999999999888774332 25532   1110  011111       1111 111223444333


Q ss_pred             HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCH
Q 039934          165 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSE  222 (329)
Q Consensus       165 ~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~  222 (329)
                      ++-|..-. .++   ..+++..-=|-++++...|++||.+|..|...+++.+.+..|.
T Consensus       149 ~fqE~aT~-i~h---~nla~~~~dPvL~~i~~rIA~DE~rH~~fy~~~v~~~le~dpd  202 (267)
T d1za0a1         149 AFYERCGA-VFC---RNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRD  202 (267)
T ss_dssp             HHHHHHHH-HHH---HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred             HHHHhHHH-HHH---HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            45565431 222   2345544458999999999999999999999999888865553


No 12 
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=96.82  E-value=0.069  Score=48.08  Aligned_cols=213  Identities=10%  Similarity=-0.016  Sum_probs=125.6

Q ss_pred             HhcCCHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-cHHH
Q 039934           53 WESLTADEKH-FITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI---KN-SDEK  127 (329)
Q Consensus        53 ~~~L~~~er~-~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~---~d-~~e~  127 (329)
                      ...|++..+. ++...|+.+...+-....+. ..+....+.+.++.+..+|++.|.+|+..=.+.+..+.   .. +.. 
T Consensus       128 ~~~l~~~w~~~~L~~~l~p~r~~E~ga~~~~-a~i~r~~~g~~i~~a~~fqa~DeLR~aQ~i~~~~~~L~~~~pgf~~~-  205 (384)
T d1mtyb_         128 IRAMNPTWRDEFINRYWGAFLFNEYGLFNAH-SQGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDES-  205 (384)
T ss_dssp             GGGSCHHHHHTTTTTHHHHHHHHHHHHHHTT-HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCC-
T ss_pred             cccCCHHHHHHHHHHHhcchhHHHHHHHHHH-HHHHhhcCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCcch-
Confidence            4578888774 67777777777775554444 35778889999999999999999999985333333332   11 110 


Q ss_pred             HHHH-HHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHH-HHHH-hcCCCcchHHHHHHHHhhhh
Q 039934          128 SRLF-RAFETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAI-FWLK-KRGLMPGLTFSNELISRDEG  203 (329)
Q Consensus       128 ~~~~-~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~-~~l~-~~~~l~g~~~~i~~I~rDE~  203 (329)
                      .... ..|.++|..+---+++.+.+....++.+.+++.. ++|+++----+.-+ -.++ .+|= ..+...+..+..||+
T Consensus       206 ~~~~k~~W~~dp~wQg~R~~vE~~l~~~~Dw~E~~vA~Nlv~dpll~~L~~~~f~~~~Aa~nGD-~~t~~l~~s~q~D~~  284 (384)
T d1mtyb_         206 TAVPKAEWTNGEVYKSARLAVEGLWQEVFDWNESAFSVHAVYDALFGQFVRREFFQRLAPRFGD-NLTPFFINQAQTYFQ  284 (384)
T ss_dssp             SHHHHHHHHHCSTTHHHHHHHHHHHHTCCCHHHHHHHHHHTHHHHHHHHHHHTTHHHHGGGGTC-CHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhccCchhHHHHHHHHHHHHhcccHHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHH
Confidence            0122 2456777655544555554422235778888875 57887543333322 2343 3342 235567789999999


Q ss_pred             hHHHHHHHHHHHHHccCCH------HHHH----HHHHHHHHHHHHhhHhhcCCCCCCCC-HHHHHHHHHHHHHHHHH
Q 039934          204 LHCDFACLLYSLLRNKLSE------ERVK----GIVKEAVEIEREFVCDALPCALVGMN-GALMSQYIEFVADRLLG  269 (329)
Q Consensus       204 ~H~~~~~~l~~~l~~~~~~------~~i~----~~~~eav~~E~~~~~~~~~~~~~Gl~-~~~~~~yi~y~an~~l~  269 (329)
                      +|...+..+++.+..+.++      ..+.    +-...+.+.=..+.- ++.....|.+ .+.+...++.+.+....
T Consensus       285 Rh~~~~~alvk~~l~~dpe~~~~Nr~llq~Wi~~W~~~a~~Al~~~~p-i~s~~p~~~~~~~~~~a~~~rv~~d~~~  360 (384)
T d1mtyb_         285 IAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWLEPTIAALRDFMG-LFAKLPAGTTDKEEITASLYRVVDDWIE  360 (384)
T ss_dssp             HHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GGGGSCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHHHhH-HhhhcCCCCCCHHHHHHHHHHHHHHhhh
Confidence            9999999998876655431      2222    222222322233331 2222223443 46667777777776544


No 13 
>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]}
Probab=96.66  E-value=0.012  Score=53.19  Aligned_cols=169  Identities=10%  Similarity=-0.047  Sum_probs=110.7

Q ss_pred             HHhcCCHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcHHH
Q 039934           52 QWESLTADEKH-FITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI---KNSDEK  127 (329)
Q Consensus        52 ~~~~L~~~er~-~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~---~d~~e~  127 (329)
                      .+.+|++..+. ++...++.+...+-....+.+ .+....+.+.++.+..+|++.|.+|+.--+++...+.   .....-
T Consensus       125 ~~~~l~p~w~~~~L~~~l~p~r~~E~ga~m~~a-~i~r~a~~~~i~n~~~fqa~DeLR~aQ~l~~~~~~L~~~~~gf~~~  203 (383)
T d1mhyb_         125 SIRTIDPYWRDEILNKYFGALLYSEYGLFNAHS-SVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDAS  203 (383)
T ss_dssp             GGGGSCHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCC
T ss_pred             ccccCCHHHHHHHHHHHhccccHHHHHHHHHHH-HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChh
Confidence            34578888874 678888887777755544443 5778889999999999999999999987666655442   111000


Q ss_pred             HHH-HHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHH-HHHhcCCCcchHHHHHHHHhhhhh
Q 039934          128 SRL-FRAFETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIF-WLKKRGLMPGLTFSNELISRDEGL  204 (329)
Q Consensus       128 ~~~-~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~-~l~~~~~l~g~~~~i~~I~rDE~~  204 (329)
                      .+. =..|.++|.-+---+++.+.+-...++.+.+++.. ++|+++----|.-+. .++..+==.-+...+..+..|+++
T Consensus       204 ~~~~k~~W~~dp~WQ~~R~~vE~~lva~~Dw~E~~vA~NlV~e~ll~~L~~~~f~~~~Aa~nGD~~t~~l~~s~q~D~~R  283 (383)
T d1mhyb_         204 TDVPKKIWTTDPIYSGARATVQEIWQGVQDWNEILWAGHAVYDATFGQFARREFFQRLATVYGDTLTPFFTAQSQTYFQT  283 (383)
T ss_dssp             SHHHHHHHHHCGGGHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHHHTTTHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcCHhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence            011 13457788655544455554432235788888875 689986543333332 234332113356678889999999


Q ss_pred             HHHHHHHHHHHHHccCC
Q 039934          205 HCDFACLLYSLLRNKLS  221 (329)
Q Consensus       205 H~~~~~~l~~~l~~~~~  221 (329)
                      |...+..+++.+..+.+
T Consensus       284 ~~~w~~alvk~~l~~d~  300 (383)
T d1mhyb_         284 TRGAIDDLFVYCLANDS  300 (383)
T ss_dssp             HHHHHHHHHCCCCCTCT
T ss_pred             HHHHHHHHHHHHHhcCc
Confidence            99999999887765543


No 14 
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]}
Probab=96.40  E-value=0.085  Score=46.53  Aligned_cols=117  Identities=14%  Similarity=-0.127  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHH
Q 039934           94 EARAFYGFQIAIENIHSEMYSLLLETYI-KNSDEKSRLFRAFETVPCVAKKADWALNWIDG--SETFAERLIAFACVEGI  170 (329)
Q Consensus        94 E~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~--~~~~~~~lv~~~~lEgi  170 (329)
                      ....|.+...++|+.|+.+-..++-.-. .||...   .         +.+...+..-++.  +.+....++...+-|..
T Consensus       113 ~W~~Wv~~WTAEEnRHg~aLr~YL~vsr~VDp~~l---E---------~~~~~~~~~G~~~~~~~~p~~~~vY~sfQE~A  180 (345)
T d1afra_         113 SWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQI---E---------KTIQYLIGSGMDPRTENSPYLGFIYTSFQERA  180 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHH---H---------HHHHHHHHHCCCCSCTTCHHHHHHHHHHHHHH
T ss_pred             chhhhccccccccchHHHHHHHHHHHhCCCChHHH---H---------HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHh
Confidence            4667889999999999999888884332 255321   1         1122333333432  22344444433445554


Q ss_pred             HhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHH
Q 039934          171 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEE  223 (329)
Q Consensus       171 ~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~  223 (329)
                      - ..++.-+-.+++..-=|-++++...|++||.+|..|...++..+.+..|..
T Consensus       181 T-~vsh~nt~~~a~e~gDPvL~~I~~rIA~DE~rH~~fY~~~v~~~Le~dPd~  232 (345)
T d1afra_         181 T-FISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDG  232 (345)
T ss_dssp             H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             H-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccH
Confidence            3 223333333343322377899999999999999999999998887655443


No 15 
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]}
Probab=95.78  E-value=0.33  Score=38.55  Aligned_cols=199  Identities=12%  Similarity=0.088  Sum_probs=109.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH--HHHHHHHH
Q 039934           57 TADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDE--KSRLFRAF  134 (329)
Q Consensus        57 ~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e--~~~~~~~~  134 (329)
                      |+.=|+++.++=+-..-++....+|... +...+|.  -+-=+..-+-||++|.+.|.--=+++...|+-  -.+.|...
T Consensus         8 se~YkdAYSRINaIVIEGEqeA~~Nyi~-la~llP~--~~dEL~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L   84 (222)
T d2oc5a1           8 SDRYKDAYSRINAIVIEGEQEAHDNYIA-IGTLLPD--HVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPL   84 (222)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhheeeEechHHHHHhHHH-HHHHCch--hHHHHHHHHHHHHHHHhHHHHHccCCcCCCCcHHHHHHHHHH
Confidence            5677899999988888888777777653 5555544  33346777789999999998888888654531  12233322


Q ss_pred             hhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Q 039934          135 ETVPCVAKKADWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY  213 (329)
Q Consensus       135 ~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~  213 (329)
                      ..+=   .++      ... ......++.-+ ++|... -+.|.+.  +.--  =|--.++-.-+.+||..|..||..-+
T Consensus        85 h~nF---q~A------~~e-gk~~tCLlIQaliIE~FA-IaAY~iY--ipVA--D~FARkITegVVkDEY~HLN~Ge~WL  149 (222)
T d2oc5a1          85 RDNF---QTA------LGQ-GKTPTCLLIQALLIEAFA-ISAYHTY--IPVS--DPFARKITEGVVKDEYTHLNYGEAWL  149 (222)
T ss_dssp             HHHH---HHH------HHT-TCHHHHHHHHHTHHHHHH-HHHHHHH--GGGS--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH---HHH------Hhc-CCeeehHHHHHHHHHHHH-HHHHHhc--cccc--cHHHHHHHHhHHhhHHHhhhhHHHHH
Confidence            2110   111      111 11222222222 455421 1222221  1100  12234477889999999999998765


Q ss_pred             HHHHccCCHHHHHHHHHHHHHHHHHhhHhhc-CCCCCCCCHHHH-HHHHHHHHHHHHHHcCCCC
Q 039934          214 SLLRNKLSEERVKGIVKEAVEIEREFVCDAL-PCALVGMNGALM-SQYIEFVADRLLGALGCGK  275 (329)
Q Consensus       214 ~~l~~~~~~~~i~~~~~eav~~E~~~~~~~~-~~~~~Gl~~~~~-~~yi~y~an~~l~~lG~~~  275 (329)
                      +.-.. .+.+++.+.-++...+-.+.++..- +..++|++++.+ ..|+- .-...|.++|+..
T Consensus       150 k~~f~-~~k~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi-~Y~eAL~~IGf~~  211 (222)
T d2oc5a1         150 KANLE-SCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLI-AYQESLTEIGFNT  211 (222)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHHHHHHTCCH
T ss_pred             HHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHcCCcH
Confidence            43321 1233443333333333333333222 236788887554 55544 4567888999863


No 16 
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=95.58  E-value=0.016  Score=44.89  Aligned_cols=137  Identities=11%  Similarity=0.019  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHH
Q 039934           67 VLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADW  146 (329)
Q Consensus        67 ~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~  146 (329)
                      +|.....++..-. ++-..++..+++|+++..+...+-+|..|.+.+..+++..+.+|..   ........+..    ..
T Consensus        15 ~l~~ai~~E~~a~-~~Y~~~a~~~~~~~~~~~f~~la~eE~~H~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~   86 (158)
T d2fzfa1          15 LLGMAIKAEIGAR-EFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEV---VFPKEHIGPEL----QP   86 (158)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHSCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCC---CCCSCCBSCCC----CC
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cchhhhhhhhh----hh
Confidence            3443344443332 3334577788999999999999999999999999999998765421   00000000000    00


Q ss_pred             HHHhhcCChhHHHHHHHHHHHHHH--HhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934          147 ALNWIDGSETFAERLIAFACVEGI--FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR  217 (329)
Q Consensus       147 ~~~~~~~~~~~~~~lv~~~~lEgi--~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~  217 (329)
                      .........+....+-.....|..  -+|.      .++..-.=|.+.+++..|..||..|......++..+.
T Consensus        87 ~~~~~~~~~~~~~~l~~a~~~E~~a~~~Y~------~la~~~~d~~~~~l~~~i~~~E~~H~~~l~~~~d~l~  153 (158)
T d2fzfa1          87 VARELEKVQDIIDLIRWAMKAEEIAAEFYL------KLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELLL  153 (158)
T ss_dssp             CCSCCCSHHHHHHHHHHHHHHHHHHHHHHH------HHHHTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhccccCCHHHHHHHHHHHHHHHHHHHH------HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            000111111222222222234443  2222      2233223378899999999999999998887776664


No 17 
>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]}
Probab=95.43  E-value=0.46  Score=37.84  Aligned_cols=151  Identities=17%  Similarity=0.145  Sum_probs=102.2

Q ss_pred             HHHhhcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHH
Q 039934           85 RFMKEVQVSEARAFYGFQIAIEN----IHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAER  160 (329)
Q Consensus        85 ~~~~~~~~~E~~~~~~~q~~~E~----iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~  160 (329)
                      .++...++++.+..+...+..|.    .|...|...++.++.++++    .....-.|..+.=.+++......+ ++...
T Consensus        54 ~~~~~~~~~~~~~~l~~~l~~e~~~~~~h~~l~~~~~~~~g~~~~~----~~~~~~~p~t~a~~~~~~~~~~~~-~~~~~  128 (213)
T d1rcwa_          54 AIHSRCDDLEARKLLLDNLMDEENGYPNHIDLWKQFVFALGVTPEE----LEAHEPSEAAKAKVATFMRWCTGD-SLAAG  128 (213)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHTTCCHHH----HHHCCCCHHHHHHHHHHHHHHTSS-CHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHhccccchHHHHHHHHHHcCCCHHH----HhhhhhhhHHHHHHHHHHHHHccc-cHHHH
Confidence            46677888999988888877663    6999999999999877753    445566788887777777766543 34444


Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHHhc-CCC--cchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 039934          161 LIAFACVEGIFFSGSFCAIFWLKKR-GLM--PGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIER  237 (329)
Q Consensus       161 lv~~~~lEgi~f~s~F~~~~~l~~~-~~l--~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~  237 (329)
                      +.++..+|.+.-.-+-...-.+.+. |..  .++.-.-..+.-|+ .|......++..+..+ .++.+.+.+..+.+.|.
T Consensus       129 ~a~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~D~-~H~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~  206 (213)
T d1rcwa_         129 VAALYSYESQIPRIAREKIRGLTEYFGFSNPEDYAYFTEHEEADV-RHAREEKALIEMLLKD-DADKVLEASQEVTQSLY  206 (213)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHSCCCSGGGGHHHHHHHHHHH-HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHhHHHHHHHHHHH-HHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHH
Confidence            4444556665432221122223333 333  23455567788886 6998888887766544 57889999999999998


Q ss_pred             HhhHh
Q 039934          238 EFVCD  242 (329)
Q Consensus       238 ~~~~~  242 (329)
                      .|.+-
T Consensus       207 ~f~D~  211 (213)
T d1rcwa_         207 GFLDS  211 (213)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            88764


No 18 
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=93.05  E-value=1.7  Score=34.75  Aligned_cols=151  Identities=12%  Similarity=-0.044  Sum_probs=92.1

Q ss_pred             HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 039934           85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAF  164 (329)
Q Consensus        85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~  164 (329)
                      ......++++.+.++......+..|.+.+.+.+..++.++++    .....-.|..+.-.+++.+...+. ++...++++
T Consensus        59 ~~~~ka~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~----~~~~~~~~~~~~y~~~l~~~a~~~-~~~~~l~al  133 (215)
T d1udda_          59 VISSKAEYPLMAELIELARDEVTVEVENYVKLLKELDLTLED----AIKTEPTLVNSAYMDFMLATAYKG-NIIEGLTAL  133 (215)
T ss_dssp             HHHHHSCTTHHHHHHHHHHHHTTHHHHHHHHHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHHS-CHHHHHHHH
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH----hcccCcchhhHHHHHHHHHHHhCC-CHHHHHHHH
Confidence            345566778888777767667788999999999999777642    444555677777667776554322 466777777


Q ss_pred             HHHHHHHhHhHHHHHHHHHhcCCCcc--hHHHHHHHHhhh-hhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhH
Q 039934          165 ACVEGIFFSGSFCAIFWLKKRGLMPG--LTFSNELISRDE-GLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVC  241 (329)
Q Consensus       165 ~~lEgi~f~s~F~~~~~l~~~~~l~g--~~~~i~~I~rDE-~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~  241 (329)
                      ..+|.++...+-...   ...+.-|+  ...=|+.-.-|+ .-++.....++..+ .+...+.+.+++..+.+.|..|-+
T Consensus       134 ~~c~~~Y~~~~~~~~---~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~~d~~-~~~~~~~~~~iF~~~~~lE~~Fwd  209 (215)
T d1udda_         134 LPCFWSYAEIAEYHK---DKLRDNPIKIYREWGKVYLSNEYLNLVGRLRKIIDSS-GHSGYDRLRRIFITGSKFELAFWE  209 (215)
T ss_dssp             HHHHHHHHHHHHHTH---HHHTTCSCHHHHHHHHGGGSHHHHHHHHHHHHHHHTS-CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH---HhcccCCCcchHHHHHHcCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777655432211   11122233  223333333443 34444333333221 122357889999999999999887


Q ss_pred             hhc
Q 039934          242 DAL  244 (329)
Q Consensus       242 ~~~  244 (329)
                      ...
T Consensus       210 ~ay  212 (215)
T d1udda_         210 MAW  212 (215)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654


No 19 
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=90.55  E-value=2.4  Score=31.36  Aligned_cols=109  Identities=16%  Similarity=0.010  Sum_probs=68.2

Q ss_pred             HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 039934           86 FMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFA  165 (329)
Q Consensus        86 ~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~  165 (329)
                      .+..-.-|++..++..|+..|..|+......+..++..|..     .   ..|.            .+...-.+..+.--
T Consensus        31 ~a~~~g~~~iA~~f~~~A~eE~~HA~~~~~~i~~lg~~p~~-----~---~~~~------------~~~~~~l~~~~~~e   90 (141)
T d1j30a_          31 RADEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPA-----T---DKPI------------GTLEQMIESAIAGE   90 (141)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTT-----T---SCBC------------SSHHHHHHHHHHHH
T ss_pred             HHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----C---CcCc------------CchhhHHHHHHHHH
Confidence            44444558899999999999999999988888888655521     0   0000            00000001111101


Q ss_pred             HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934          166 CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR  217 (329)
Q Consensus       166 ~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~  217 (329)
                      ..|..-.|..|+   -.++.-.-+++...+++|..||..|......++..|.
T Consensus        91 ~~e~~~~y~~~~---~~A~~e~d~~~~~~~~~i~~~E~~H~~~f~~~l~~l~  139 (141)
T d1j30a_          91 TYEWTQMYPGFA---KVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLK  139 (141)
T ss_dssp             HHHHHTHHHHHH---HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            122232233333   3355555799999999999999999999999888775


No 20 
>d1otka_ a.25.1.2 (A:) Phenylacetic acid degradation protein PaaC {Escherichia coli [TaxId: 562]}
Probab=87.21  E-value=6.9  Score=32.21  Aligned_cols=175  Identities=9%  Similarity=0.015  Sum_probs=102.9

Q ss_pred             HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhc-CChhHHHHHHHH
Q 039934           86 FMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWID-GSETFAERLIAF  164 (329)
Q Consensus        86 ~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~-~~~~~~~~lv~~  164 (329)
                      .....|.-|.+..++..+-+|.=|+..+-.++..+..++.+  +.+.. ..++.-. |+   ....+ ...+|+..++..
T Consensus        26 W~~~aP~LEediAlanialD~lGhAr~ly~~a~el~g~~~e--D~la~-~R~~~~f-rn---~~l~e~P~~dwa~tv~r~   98 (244)
T d1otka_          26 WCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDE--DTLAF-TRDERQF-SN---LLLVEQPNGNFADTIARQ   98 (244)
T ss_dssp             TTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCH--HHHHH-SCCGGGC-CC---CGGGGSCCCSHHHHHHHH
T ss_pred             HhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH--HHHHH-hcChhhh-hc---hHHHcCCCCCHHHHHHHH
Confidence            44567888999999999999999999888888888543321  22221 1122100 00   00111 223466555432


Q ss_pred             HHHHHHHhHhHHHHHHHH-HhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhHhh
Q 039934          165 ACVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVKGIVKEAVEIEREFVCDA  243 (329)
Q Consensus       165 ~~lEgi~f~s~F~~~~~l-~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~i~~~~~eav~~E~~~~~~~  243 (329)
                            +||..|..+.+- -.+.--+-++.+..+|.+.|.-|..++..-+.+|...  .++-++.+.+|++.=-.++...
T Consensus        99 ------fl~d~~~~~~l~~L~~ss~~pLa~ia~K~~kEe~yH~~h~~~W~~rL~~g--TeEsr~rmq~Al~~lwp~~~el  170 (244)
T d1otka_          99 ------YFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNG--TDVSGQKMQQAINKLWRFTAEL  170 (244)
T ss_dssp             ------HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHGGGTGGG
T ss_pred             ------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHH
Confidence                  355555555431 1345678899999999999999999998866666532  3555666666665444555444


Q ss_pred             cCCC---------CCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q 039934          244 LPCA---------LVGMNGALMSQYIEFVADRLLGALGCGK  275 (329)
Q Consensus       244 ~~~~---------~~Gl~~~~~~~yi~y~an~~l~~lG~~~  275 (329)
                      |+.+         -++.+.+.+++=-.-.....|...|++-
T Consensus       171 F~~~~~~~~l~~~Gi~~~~~~Lr~~w~~~v~~vl~~agL~~  211 (244)
T d1otka_         171 FDADEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLNV  211 (244)
T ss_dssp             GCCCHHHHHHHHTTSSCCGGGGHHHHHHHHHHHHHHTTCCC
T ss_pred             cCCChHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            4211         1234444454433445566666666663


No 21 
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}
Probab=86.14  E-value=0.76  Score=34.47  Aligned_cols=119  Identities=14%  Similarity=0.024  Sum_probs=64.2

Q ss_pred             HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 039934           85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAF  164 (329)
Q Consensus        85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~  164 (329)
                      .++..+ +|+++..+...+-+|..|.+.+..+++.+.  +..   .-......+.......+.........+. ..++..
T Consensus        27 ~~a~~~-~~~~~~~f~~la~eE~~H~~~l~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~   99 (149)
T d1vjxa_          27 ELSEHF-NGEIKKTFLELADQERIHAEIFRKMSDQEN--WDE---VDSYLAGYAFYEVFPDTSEILRRKDLTL-KEVLDI   99 (149)
T ss_dssp             HHTTSC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHSC--HHH---HTCBCCSBCCCCCCCCCTTGGGCSCCCH-HHHHHH
T ss_pred             HHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCc---chHHHHHHhhhhhhhhhHHHHhccCCCH-HHHHHH
Confidence            344444 578898999999999999999999999874  221   1110000000000000001111122222 223333


Q ss_pred             H-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHH
Q 039934          165 A-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS  214 (329)
Q Consensus       165 ~-~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~  214 (329)
                      + .+|...    ......++..-.=|.+..++..|+.||..|......+.+
T Consensus       100 ai~~E~~a----~~~Y~~l~~~~~d~~~r~~~~~i~~eE~~H~~~l~~l~~  146 (149)
T d1vjxa_         100 AISVEKDS----IILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKR  146 (149)
T ss_dssp             HHHHHHHH----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2 344332    111123343334478999999999999999987766543


No 22 
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=84.53  E-value=6.1  Score=29.21  Aligned_cols=110  Identities=16%  Similarity=0.006  Sum_probs=69.5

Q ss_pred             HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 039934           85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAF  164 (329)
Q Consensus        85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~  164 (329)
                      ..+....-|++..++..++..|..|+.....++..++.+|..         ..|.           .....+ ...++..
T Consensus        31 ~~a~~~g~~~ia~~f~~~A~eE~~HA~~l~~~l~~lg~~p~~---------~~~~-----------~~~~~~-~~~l~~~   89 (146)
T d1lkoa1          31 GQAKKDGFVQISDIFAETADQEREHAKRLFKFLEGGDLEIVA---------AFPA-----------GIIADT-HANLIAS   89 (146)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCCCC---------CCCC-----------CCCCCH-HHHHHHH
T ss_pred             HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcCC---------CCCc-----------cccCCc-HHHHHHH
Confidence            344555668999999999999999999877777666555521         0000           000111 1111111


Q ss_pred             H---HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHc
Q 039934          165 A---CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRN  218 (329)
Q Consensus       165 ~---~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~  218 (329)
                      .   --|.+-.|..|+-.   ++.-.-+.++..+++|..||..|......++..+.+
T Consensus        90 ~~~~e~e~~~~y~~~~~~---a~~~~D~~~~~~f~~i~~~E~~H~~~f~~~l~~l~~  143 (146)
T d1lkoa1          90 AAGEHHEYTEMYPSFARI---AREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKE  143 (146)
T ss_dssp             HHHHHHHHHTHHHHHHHH---HHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            1   12344444444433   444445889999999999999999999988887754


No 23 
>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=81.83  E-value=10  Score=29.77  Aligned_cols=145  Identities=13%  Similarity=0.169  Sum_probs=94.6

Q ss_pred             HHHhhcChHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 039934           85 RFMKEVQVSEARAFYGFQIAI-ENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIA  163 (329)
Q Consensus        85 ~~~~~~~~~E~~~~~~~q~~~-E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~  163 (329)
                      .++...++++.+..+..++.. +.-|.+.+.+.++.++.++++    .....-.|..+.=.+++.+...+. ++...+++
T Consensus        64 ~~~~ka~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~----~~~~~~~p~t~~y~~~l~~~a~~~-~~~~~l~a  138 (217)
T d1z72a1          64 ACVAHADKLESKLRFAKQLGFLEADEDGYFQKAFKELKVAEND----YLEVTLHPVTKAFQDLMYSAVASS-DYAHLLVM  138 (217)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTHH----HHSCCCCHHHHHHHHHHHHHHHHT-CHHHHHHH
T ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh----ccccCCChHhhHHHHHHHHHHhcC-CHHHHHHH
Confidence            455667777777776666544 567899999999999766642    455566788777777776655332 46677777


Q ss_pred             HHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHH---Hhhh-hhHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHH
Q 039934          164 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELI---SRDE-GLHCDFACLLYSLLRN-KLSEERVKGIVKEAVEIERE  238 (329)
Q Consensus       164 ~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I---~rDE-~~H~~~~~~l~~~l~~-~~~~~~i~~~~~eav~~E~~  238 (329)
                      +..+|.++...+       .+....|.-..-..||   .-+| .-|+.....++..+.. +...+.+.+++..+.+.|..
T Consensus       139 l~~~~~~Y~~~~-------~~~~~~~~~~~y~~wi~~~~~~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~f~~~~~lE~~  211 (217)
T d1z72a1         139 LVIAEGLYLDWG-------SKDLALPEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGKNREDLTELQQRWNQAVALELA  211 (217)
T ss_dssp             HHHHHHHHHHHH-------TCSSCCCSSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-------HHHhcCCCCchHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            766666543211       1122233323344566   4455 5777777777766654 33467899999999999999


Q ss_pred             hhH
Q 039934          239 FVC  241 (329)
Q Consensus       239 ~~~  241 (329)
                      |-+
T Consensus       212 Fwd  214 (217)
T d1z72a1         212 FFD  214 (217)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            864


No 24 
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]}
Probab=80.57  E-value=6.9  Score=27.01  Aligned_cols=67  Identities=10%  Similarity=0.205  Sum_probs=52.8

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Q 039934           54 ESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSD  125 (329)
Q Consensus        54 ~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~  125 (329)
                      .+||+..++...-+.+...-+|.+   ++=...+....+|+++.++.-.+-+|-.|.-.+-.+|+.+  ||.
T Consensus         8 e~Ls~e~~d~~Rai~sli~EleAI---~~Y~q~a~~t~d~~~k~Vl~hia~EEkeH~g~~LelLrr~--Dp~   74 (91)
T d1zpya1           8 QELSDETRDMHRAIISLREELEAV---DLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRC--DPA   74 (91)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHH
T ss_pred             hHcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHH
Confidence            378999888777776554445544   3444577888999999999999999999999999999976  664


No 25 
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=79.89  E-value=8.8  Score=27.82  Aligned_cols=101  Identities=14%  Similarity=0.029  Sum_probs=61.2

Q ss_pred             HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 039934           85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAF  164 (329)
Q Consensus        85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~  164 (329)
                      ..+....-|++..++..++.+|..|+......+..++.+|.-        ...+.           ... ....+.+...
T Consensus        30 ~~~~~~g~~~ia~~f~~~A~eE~~HA~~l~~~l~~lgg~p~~--------~~~~~-----------~~~-~~~~~~L~~~   89 (135)
T d1yuza1          30 KAAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYEK--------PTVAA-----------PSA-YSCDLNLISG   89 (135)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC--------CCC-------------CCC-CCHHHHHHHH
T ss_pred             HHHhHCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--------ccccc-----------CcC-CchhhhHHHH
Confidence            344455568899999999999999999988888888766631        11110           000 0111111111


Q ss_pred             HH---HHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHH
Q 039934          165 AC---VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF  208 (329)
Q Consensus       165 ~~---lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~  208 (329)
                      ..   .|.+-.|..   +.-.++.-.-+.+++.+..|..||..|...
T Consensus        90 ~~~ee~e~~~~Y~~---~~~~A~~~~d~~~~~~f~~i~~~E~~H~e~  133 (135)
T d1yuza1          90 ANGEIYETSDMYPA---FIRKAQEEGNSKAVHVFTRAKLAESVHAER  133 (135)
T ss_dssp             HHHHHHHHHTHHHH---HHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence            11   223332322   223455545688999999999999999874


No 26 
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=79.68  E-value=11  Score=28.59  Aligned_cols=110  Identities=12%  Similarity=-0.091  Sum_probs=66.8

Q ss_pred             hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 039934           88 KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACV  167 (329)
Q Consensus        88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~l  167 (329)
                      ....-+....++..++..|..|+......+..+++.|.     +..... |.          ...+.....+..+.. =-
T Consensus        35 ~~~~~~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~-----~~~~~~-~~----------~~~~~~e~l~~~l~~-E~   97 (169)
T d1nf4a_          35 DDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPT-----TQKEGK-VV----------TGQAVPVIYESDADQ-ED   97 (169)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CCCSSC-CC----------CSCCHHHHHHHHHHH-HH
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCc-----cccccc-cc----------CCCCHHHHHHHHHHH-HH
Confidence            44455778889999999999999999999999987663     111100 00          000111111111110 01


Q ss_pred             HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934          168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR  217 (329)
Q Consensus       168 Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~  217 (329)
                      +.+-.|..   +...+..-.=++++..++.|..||..|......++..+.
T Consensus        98 ~~~~~y~~---~~~~A~~~~D~~t~~~l~~il~eE~~H~~~~e~~l~~i~  144 (169)
T d1nf4a_          98 ATIEAYSQ---FLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIK  144 (169)
T ss_dssp             HHHHHHHH---HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12222222   223344444589999999999999999999888877664


No 27 
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=78.47  E-value=10  Score=27.73  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=45.1

Q ss_pred             HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccC---------------------CHHHHHHHHHHHHHHHHHhh
Q 039934          182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKL---------------------SEERVKGIVKEAVEIEREFV  240 (329)
Q Consensus       182 l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~---------------------~~~~i~~~~~eav~~E~~~~  240 (329)
                      ++..-.-|++.+++..+++||..|......+++.+...+                     +.....+++..++..|..=+
T Consensus        33 ~a~~~~~~~~~~~f~~la~eE~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~a~  112 (158)
T d2fzfa1          33 LAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAA  112 (158)
T ss_dssp             HHHSCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCCCSCCBSCCCCCCCSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccchhhhhhhhhhhhHhhccccCCHHHHHHHHHHHHHHHH
Confidence            344445599999999999999999999999988775321                     13457788888888887644


No 28 
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}
Probab=78.46  E-value=12  Score=31.01  Aligned_cols=117  Identities=13%  Similarity=0.049  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHhhcHHHHHHHH-----------------------HHH
Q 039934           93 SEARAFYGFQIAIENIHSEMYSLLLETYIKNSD-EKSRLFRAFETVPCVAKKAD-----------------------WAL  148 (329)
Q Consensus        93 ~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~-e~~~~~~~~~~~~~l~~k~~-----------------------~~~  148 (329)
                      ...+..+.-.+.+|--|.+..+.++..+..+.. ...    ....+|.+..-..                       |..
T Consensus        53 ~~~~dll~dIatEEl~HlEmvat~I~~Ll~~~~~~~~----~~~~~~~~~~~~~G~~p~~~~~~g~g~~~~ds~G~pWt~  128 (266)
T d1jkva_          53 EKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPE----DLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNA  128 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHH----HHHHCTTHHHHHHHSCHHHHHTTSSCCCSBCTTCCBCBG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh----hcccchhHHHHhcCCCcceeeeccCcccccCCCCCCCCc
Confidence            457888999999999999999999998864321 111    1223333322111                       122


Q ss_pred             HhhcCChhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934          149 NWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR  217 (329)
Q Consensus       149 ~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~  217 (329)
                      +++...-++..-+.+....|.-.- ..+.-   +.+.-.=|++.+++.+|..||..|..-....++.|.
T Consensus       129 ~Yv~~~Gnl~~DL~~NiaAE~~Ar-~~Y~r---l~~~tdDp~vk~~L~fL~~rE~~H~~~f~~aLe~l~  193 (266)
T d1jkva_         129 GYVTSSGNLVADMRFNVVRESEAR-LQVSR---LYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELE  193 (266)
T ss_dssp             GGCCCCSCHHHHHHHHHHHHHHHH-HHHHH---HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCHHHHHHHHHHHHHHHH-HHHHH---HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222222334445555555554311 11222   222223399999999999999999998888887775


No 29 
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=75.51  E-value=7.3  Score=32.47  Aligned_cols=38  Identities=11%  Similarity=0.125  Sum_probs=34.2

Q ss_pred             HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039934           84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI  121 (329)
Q Consensus        84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~  121 (329)
                      ..+.+...+|-.+..++..+.+|++|..+|.++++.++
T Consensus       160 ~nla~~~~dPvL~~i~~rIA~DE~rH~~fy~~~v~~~l  197 (267)
T d1za0a1         160 RNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCL  197 (267)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35777889999999999999999999999999999875


No 30 
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=73.16  E-value=14  Score=26.85  Aligned_cols=101  Identities=9%  Similarity=-0.035  Sum_probs=65.3

Q ss_pred             HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 039934           84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIA  163 (329)
Q Consensus        84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~  163 (329)
                      ..++..-..|++...+...+..|..|++-....+..+..+|.          ..+.                    + +.
T Consensus        29 A~~a~~~G~~~lA~~f~~~A~eE~~HA~~~~~~i~~l~~~~~----------~L~~--------------------~-~~   77 (133)
T d1nnqa1          29 AEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPE----------NLQM--------------------G-IE   77 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH----------HHHH--------------------H-HH
T ss_pred             HHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh----------hhHH--------------------H-HH
Confidence            345566667888889999999999999887665543321111          0000                    0 00


Q ss_pred             HHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHc
Q 039934          164 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRN  218 (329)
Q Consensus       164 ~~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~  218 (329)
                      ---.|.+-.|..|+-.   ++.-..++++..+..|..||..|......++..+.+
T Consensus        78 ~e~~e~~~~Y~e~~~~---a~~egd~~~a~~f~~i~~~E~~Ha~~f~~~l~~le~  129 (133)
T d1nnqa1          78 GETFEVEEMYPVYNKA---AEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEK  129 (133)
T ss_dssp             HHHHHHHTHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            0012333333333333   555567899999999999999999999999888764


No 31 
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]}
Probab=69.30  E-value=9.4  Score=26.30  Aligned_cols=55  Identities=9%  Similarity=-0.055  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHH-HHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 039934          156 TFAERLIAFAC-VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL  216 (329)
Q Consensus       156 ~~~~~lv~~~~-lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l  216 (329)
                      .+.+++.+... +|.|-+|...+-.      -..|.+..++.-|+++|-.|.+....+++.+
T Consensus        16 d~~Rai~sli~EleAI~~Y~q~a~~------t~d~~~k~Vl~hia~EEkeH~g~~LelLrr~   71 (91)
T d1zpya1          16 DMHRAIISLREELEAVDLYNQRVNA------CKDKELKAILAHNRDEEKEHAAMLLEWIRRC   71 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566665443 8889888766554      6679999999999999999999777665543


No 32 
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}
Probab=67.90  E-value=12  Score=27.11  Aligned_cols=115  Identities=11%  Similarity=-0.060  Sum_probs=64.0

Q ss_pred             hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH-hhcHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 039934           88 KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAF-ETVPCVAKKADWALNWIDGSETFAERLIAFAC  166 (329)
Q Consensus        88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~-~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~  166 (329)
                      +....++++..+...+.+|..|.+.+..++..+...+..   ..... ...+....     ........+....+-...-
T Consensus        29 ~~~~~~~~~~~f~~la~eE~~H~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~Al~  100 (152)
T d2oh3a1          29 EAHNNLDTATVFRDMARFSTLHGDEIKQRSRALELPKLM---SWQYRWKTPPEVGD-----ENDIHYLMTPYHALRYARD  100 (152)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC---GGGTSCCCCCCSSC-----C---CGGGSHHHHHHHHHH
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc---hhhhccccchhHHH-----HHhhcccCCHHHHHHHHHH
Confidence            444568999999999999999999999888877543310   00000 00000000     0001111122222221122


Q ss_pred             HH--HHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 039934          167 VE--GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL  216 (329)
Q Consensus       167 lE--gi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l  216 (329)
                      .|  ++-||..+      +..-.=|.+..++..++.+|..|......+++.+
T Consensus       101 ~E~~a~~~Y~~~------a~~~~d~~~r~~~~~l~~~E~~H~~~l~~~l~~~  146 (152)
T d2oh3a1         101 NEIRGMEYYKEA------AANSADPEVKRLGADFAAEEAEHVVALDKWIEKT  146 (152)
T ss_dssp             HHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33  33333332      2211127889999999999999999888777665


No 33 
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=65.89  E-value=22  Score=26.14  Aligned_cols=110  Identities=13%  Similarity=-0.080  Sum_probs=65.8

Q ss_pred             hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 039934           88 KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACV  167 (329)
Q Consensus        88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~l  167 (329)
                      ....-+....++-.|+..|.-|++.....+..++..|.     ..... .|.          ...+.....+....   .
T Consensus        33 ~~~~~~~la~~f~~~a~eE~~Ha~~l~eri~~lGg~p~-----~~~~~-~~~----------~~~~~~~~l~~~~~---~   93 (158)
T d2htna1          33 KNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPN-----LQDLG-KLN----------IGEDVEEMLRSDLA---L   93 (158)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CSCCC-CCC----------CCSSHHHHHHHHHH---H
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----ccccc-ccc----------CCCCHHHHHHHHHH---H
Confidence            34445667788889999999999999999999987663     11111 000          00011111111111   1


Q ss_pred             HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934          168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR  217 (329)
Q Consensus       168 Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~  217 (329)
                      |- -....+.-+...+....=|++...+..|.+||..|..+....+..+.
T Consensus        94 e~-~~~~~~~~~~~~a~~~~D~~t~~~l~~il~eee~h~~~l~~~L~~~~  142 (158)
T d2htna1          94 EL-DGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQ  142 (158)
T ss_dssp             HH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 01112222233444455699999999999999999999988777664


No 34 
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]}
Probab=65.76  E-value=21  Score=26.59  Aligned_cols=60  Identities=12%  Similarity=0.025  Sum_probs=41.7

Q ss_pred             HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccC--------C--HHHHHHHHHHHHHHHHHhhH
Q 039934          181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKL--------S--EERVKGIVKEAVEIEREFVC  241 (329)
Q Consensus       181 ~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~--------~--~~~i~~~~~eav~~E~~~~~  241 (329)
                      ++.+.| +||+++-++.-+.+|.-|..-...-+...-..+        +  ...+.+++..+.+.|++-+.
T Consensus        29 ~~~~~~-l~g~a~~f~~~a~EE~~HA~~l~~yl~~rgg~~~~~~i~~p~~~~~~~~~~~~~al~~E~~v~~   98 (161)
T d1euma_          29 WCSYHT-FEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQ   98 (161)
T ss_dssp             HHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHHHH
Confidence            345555 899999999999999999986555444332111        1  13577888888888887554


No 35 
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=61.22  E-value=5  Score=29.73  Aligned_cols=34  Identities=9%  Similarity=-0.133  Sum_probs=27.2

Q ss_pred             HhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 039934          183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL  216 (329)
Q Consensus       183 ~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l  216 (329)
                      ++..-+|+++..+..++++|..|......++..+
T Consensus        33 a~~~g~~~ia~~f~~~A~eE~~HA~~l~~~l~~l   66 (146)
T d1lkoa1          33 AKKDGFVQISDIFAETADQEREHAKRLFKFLEGG   66 (146)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred             HHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4455589999999999999999999766655433


No 36 
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=59.90  E-value=18  Score=26.03  Aligned_cols=36  Identities=11%  Similarity=0.034  Sum_probs=29.9

Q ss_pred             HhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHc
Q 039934          183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRN  218 (329)
Q Consensus       183 ~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~  218 (329)
                      ++..-+|++++.++.++++|..|.......+..+-.
T Consensus        32 ~~~~g~~~ia~~f~~~A~eE~~HA~~l~~~l~~lgg   67 (135)
T d1yuza1          32 AREQGYEQIARLFEATAAAELIHIGLEYALVAEMEP   67 (135)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             HhHCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            455568999999999999999999988777776643


No 37 
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}
Probab=59.41  E-value=9.7  Score=31.67  Aligned_cols=37  Identities=19%  Similarity=0.218  Sum_probs=34.9

Q ss_pred             HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039934           84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY  120 (329)
Q Consensus        84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~  120 (329)
                      .+++..+.+|.++.++.+-+..|.+|...|...|+++
T Consensus       156 ~rl~~~tdDp~vk~~L~fL~~rE~~H~~~f~~aLe~l  192 (266)
T d1jkva_         156 SRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEEL  192 (266)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678899999999999999999999999999999988


No 38 
>d2gm8a1 a.132.1.3 (A:2-212) TenA homolog PAE0170 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=56.39  E-value=39  Score=25.86  Aligned_cols=149  Identities=14%  Similarity=-0.073  Sum_probs=85.4

Q ss_pred             HHHhhcChHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 039934           85 RFMKEVQVSEARAFYGFQIA-IENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIA  163 (329)
Q Consensus        85 ~~~~~~~~~E~~~~~~~q~~-~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~  163 (329)
                      .+....++++....+..++. ....+...+..+++.++.++++    .......|..+.-.+++.....+ .++...+++
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~gi~~~~----~~~~~~~~~~~~y~~~l~~~a~~-~~~~~~l~a  129 (211)
T d2gm8a1          55 LAASRAPSVDLMKTALELAYGTVTGEMANYEALLKEVGLSLRD----AAEAEPNRVNVSYMAYLKSTCAL-EGFYQCMAA  129 (211)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHH----HhhcCCchhhhhHHHHHHHHHhc-CCHHHHHHH
Confidence            45566777776666555443 3455777778888888766642    33445566666555566544332 246667777


Q ss_pred             HHHHHHHHhHhHHHHHHHHHhc-CCCcchHHHHHHHH--hhhhhHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHh
Q 039934          164 FACVEGIFFSGSFCAIFWLKKR-GLMPGLTFSNELIS--RDEGLHCDFACLLYSLLRNK-LSEERVKGIVKEAVEIEREF  239 (329)
Q Consensus       164 ~~~lEgi~f~s~F~~~~~l~~~-~~l~g~~~~i~~I~--rDE~~H~~~~~~l~~~l~~~-~~~~~i~~~~~eav~~E~~~  239 (329)
                      +..+|.++-..+    -.+.++ +.-|+.- --.||.  .++. |..+...+.+.+-+- ...+++.+++..+++.|..|
T Consensus       130 l~~c~~~Y~~~~----~~~~~~~~~~~~~~-y~~wi~~~~~~~-f~~~v~~l~~~ld~~~~~~~~~~~~f~~~~~lE~~F  203 (211)
T d2gm8a1         130 LLPCFWSYAEIA----ERHGGKLRENPVHV-YKKWASVYLSPE-YRGLVERLRAVLDSSGLSAEELWPYFKEASLYELEF  203 (211)
T ss_dssp             HHHHHHHHHHHH----HHHGGGGGGCCCHH-HHHHHHHHHSHH-HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHhhccccCCCc-HHHHHHHhCCHH-HHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence            767777653322    122222 2223321 113443  2332 444555555544332 23578899999999999999


Q ss_pred             hHhhc
Q 039934          240 VCDAL  244 (329)
Q Consensus       240 ~~~~~  244 (329)
                      -+...
T Consensus       204 wd~ay  208 (211)
T d2gm8a1         204 WQAAY  208 (211)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654


No 39 
>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus subtilis [TaxId: 1423]}
Probab=56.06  E-value=41  Score=26.06  Aligned_cols=149  Identities=13%  Similarity=-0.018  Sum_probs=96.1

Q ss_pred             HHHhhcChHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 039934           85 RFMKEVQVSEARAFYGFQIA-IENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIA  163 (329)
Q Consensus        85 ~~~~~~~~~E~~~~~~~q~~-~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~  163 (329)
                      .++...++++.+..+..++. ....|.+.+..+.+.++.+++    -.......|..+.-.+++.+...+. ++...+++
T Consensus        56 ~~~~ka~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~----~~~~~~~~p~~~~y~~~l~~~a~~~-~~~~~l~A  130 (225)
T d1to9a_          56 FGAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEE----ERKAFKPSPTAYSYTSHMYRSVLSG-NFAEILAA  130 (225)
T ss_dssp             HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH----HHHTCCCCHHHHHHHHHHHHHHTTC-CHHHHHHH
T ss_pred             HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHhhcCcccccchHHHHHHHHHhcC-CHHHHHHH
Confidence            45566788877766655543 345677778888888876664    2444566777777777777666543 57788888


Q ss_pred             HHHHHHHHhHhHHHHHHHHHhcCCCcc---hHHHHHHHHhhh-hhHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHH
Q 039934          164 FACVEGIFFSGSFCAIFWLKKRGLMPG---LTFSNELISRDE-GLHCDFACLLYSLLRNKLSE---ERVKGIVKEAVEIE  236 (329)
Q Consensus       164 ~~~lEgi~f~s~F~~~~~l~~~~~l~g---~~~~i~~I~rDE-~~H~~~~~~l~~~l~~~~~~---~~i~~~~~eav~~E  236 (329)
                      +..+|.++...+-.    +.  +..++   ..+=|+.=.-++ .-++.....++..+.+..++   +.+.+++..+.++|
T Consensus       131 l~~ce~~Y~~~~~~----~~--~~~~~~~~y~~wi~~~~~~~f~~~~~~~~~~ld~~~~~~~~~~~~~~~~~f~~~~~lE  204 (225)
T d1to9a_         131 LLPCYWLYYEVGEK----LL--HCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYE  204 (225)
T ss_dssp             HHHHHHHHHHHHHH----TT--TCCCSSHHHHHHHHHHHSTTTTTHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HH--hcccCCchHHHHHHcccCchhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            77777765432211    11  22333   333233333344 35677777788888777765   45778899999999


Q ss_pred             HHhhHhhc
Q 039934          237 REFVCDAL  244 (329)
Q Consensus       237 ~~~~~~~~  244 (329)
                      ..|-+...
T Consensus       205 ~~Fwd~ay  212 (225)
T d1to9a_         205 YQFWGMAY  212 (225)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998776


No 40 
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=53.06  E-value=14  Score=27.82  Aligned_cols=58  Identities=17%  Similarity=0.044  Sum_probs=43.1

Q ss_pred             hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHhhH
Q 039934          184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---------EERVKGIVKEAVEIEREFVC  241 (329)
Q Consensus       184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~i~~~~~eav~~E~~~~~  241 (329)
                      ..--++++++.++.++.+|..|..-....+..+--.|+         ...+.+++..+++.|...+.
T Consensus        35 ~~~~~~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~  101 (169)
T d1nf4a_          35 DDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIE  101 (169)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCCCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            33458999999999999999999988877776653332         13456778888888776554


No 41 
>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus thermophilus [TaxId: 274]}
Probab=51.89  E-value=13  Score=31.34  Aligned_cols=70  Identities=19%  Similarity=0.281  Sum_probs=50.0

Q ss_pred             CCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 039934           37 SFWTAEEVDLSQDIRQWESLTADEKHFITHVLAFFAASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLL  116 (329)
Q Consensus        37 ~fW~p~eid~~~D~~~~~~L~~~er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~i  116 (329)
                      +.|+..-|.-+.|+..          -+...+    .++ ..++..-.+++..+.+|.++..+++-+..|.+|...|...
T Consensus       131 ~pWt~~Yv~~sGnl~a----------DL~~Ni----~aE-~~Ar~~y~rl~~~tdDp~vkd~L~fLi~RE~~H~~~f~~A  195 (299)
T d2cwla1         131 EHWNGEYVFTSGNLIL----------DLLHNF----FLE-VAARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKA  195 (299)
T ss_dssp             CBCBGGGCCCCSCHHH----------HHHHHH----HHH-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCccccCCCCCHHH----------HHHHHH----HHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4588888887776641          111111    111 1123333578889999999999999999999999999999


Q ss_pred             HHHhc
Q 039934          117 LETYI  121 (329)
Q Consensus       117 l~~~~  121 (329)
                      |+++-
T Consensus       196 Le~l~  200 (299)
T d2cwla1         196 LESLT  200 (299)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99994


No 42 
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]}
Probab=47.75  E-value=44  Score=28.50  Aligned_cols=41  Identities=24%  Similarity=0.242  Sum_probs=32.8

Q ss_pred             HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcH
Q 039934           85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYI-KNSD  125 (329)
Q Consensus        85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~  125 (329)
                      .++....+|-.+..++..+.+|++|..+|.++++.++ .||+
T Consensus       190 ~~a~e~gDPvL~~I~~rIA~DE~rH~~fY~~~v~~~Le~dPd  231 (345)
T d1afra_         190 RQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPD  231 (345)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence            3445555788888999999999999999999999885 2454


No 43 
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=46.55  E-value=50  Score=24.19  Aligned_cols=58  Identities=12%  Similarity=-0.018  Sum_probs=43.9

Q ss_pred             hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHhhH
Q 039934          184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---------EERVKGIVKEAVEIEREFVC  241 (329)
Q Consensus       184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~i~~~~~eav~~E~~~~~  241 (329)
                      ...-++|+++.++..+.+|..|..-...-+..+-..++         ...+.++++.+++.|...+.
T Consensus        33 ~~~~~~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~   99 (160)
T d1jgca_          33 EDWGLAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDPLRIGEGPRETLECDLAGEHDALK   99 (160)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence            44568999999999999999999977776665543221         13477888888888887664


No 44 
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}
Probab=45.16  E-value=47  Score=23.55  Aligned_cols=37  Identities=14%  Similarity=-0.041  Sum_probs=31.9

Q ss_pred             HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039934           84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY  120 (329)
Q Consensus        84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~  120 (329)
                      ..++..+++|+++..+...+..|..|......+++.+
T Consensus       110 ~~~a~~~~d~~~r~~~~~l~~~E~~H~~~l~~~l~~~  146 (152)
T d2oh3a1         110 KEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKT  146 (152)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3567788899999999999899999999999988887


No 45 
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]}
Probab=43.73  E-value=57  Score=24.12  Aligned_cols=59  Identities=8%  Similarity=-0.044  Sum_probs=39.2

Q ss_pred             HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHcc--------CC--HHHHHHHHHHHHHHHHHhhH
Q 039934          182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNK--------LS--EERVKGIVKEAVEIEREFVC  241 (329)
Q Consensus       182 l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~--------~~--~~~i~~~~~eav~~E~~~~~  241 (329)
                      +.+.| +||+++-+..-+.+|.-|..-...-+...-..        |.  ...+.++++.+.+.|+.-..
T Consensus        31 ~~~~~-l~g~a~~f~~~s~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~~~~l~~al~~E~~v~~   99 (165)
T d1krqa_          31 CYENS-LDGAGAFLFAHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITK   99 (165)
T ss_dssp             HHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCCCCCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred             Hhhcc-hhHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccCccccccccCCCHHHHHHHHHHHHHHHHH
Confidence            34555 89999999999999999998554433222111        11  13467788888888876554


No 46 
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=41.21  E-value=19  Score=25.96  Aligned_cols=35  Identities=11%  Similarity=-0.142  Sum_probs=28.5

Q ss_pred             HhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934          183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR  217 (329)
Q Consensus       183 ~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~  217 (329)
                      +..--+|+++..+..++++|..|.......+..+-
T Consensus        32 a~~~g~~~iA~~f~~~A~eE~~HA~~~~~~i~~lg   66 (141)
T d1j30a_          32 ADEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGG   66 (141)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            44456899999999999999999987777666553


No 47 
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}
Probab=35.53  E-value=68  Score=22.59  Aligned_cols=35  Identities=14%  Similarity=-0.016  Sum_probs=27.9

Q ss_pred             HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039934           84 ARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLE  118 (329)
Q Consensus        84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~  118 (329)
                      ..++..+++|+++.++...+.+|..|......+.+
T Consensus       112 ~~l~~~~~d~~~r~~~~~i~~eE~~H~~~l~~l~~  146 (149)
T d1vjxa_         112 YELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKR  146 (149)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677888899888888888889999887766654


No 48 
>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=33.99  E-value=89  Score=23.48  Aligned_cols=145  Identities=18%  Similarity=0.053  Sum_probs=85.8

Q ss_pred             HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 039934           85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAF  164 (329)
Q Consensus        85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~  164 (329)
                      .++...++++.+.+.... .....|.+.+.+.+..++.+..        ....|..+.-.+++.+...+ .++...++++
T Consensus        56 ~~~~~~~~~~~~~~~~~~-~~~~~E~~~~~~~~~~~g~~~~--------~~~~p~~~~y~~~l~~~a~~-~~~~~~~~al  125 (206)
T d1rtwa_          56 LLMAKAPDDLLPFFAESI-YYISKELEMFEKKAQELGISLN--------GEIDWRAKSYVNYLLSVASL-GSFLEGFTAL  125 (206)
T ss_dssp             HHHHHSCGGGHHHHHHHH-HHHHHHHHHHHHHHHHTTCCSS--------SCCCHHHHHHHHHHHHHHHH-SCHHHHHHHH
T ss_pred             HHHhcCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCccc--------cccchhHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence            344556776666544333 3334566666677777765432        12357766666777665543 2567777777


Q ss_pred             HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhh-hhHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHhh
Q 039934          165 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDE-GLHCDFACLLYSLLRNKLSE---ERVKGIVKEAVEIEREFV  240 (329)
Q Consensus       165 ~~lEgi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE-~~H~~~~~~l~~~l~~~~~~---~~i~~~~~eav~~E~~~~  240 (329)
                      ..+|.++...+-...-...  .--| ...=++.=..+| .-++.....++..+.+..++   +.+.+++..+.+.|..|-
T Consensus       126 ~~~e~~Y~~~~~~~~~~~~--~~~~-y~~wi~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~F~~~~~lE~~Fw  202 (206)
T d1rtwa_         126 YCEEKAYYEAWKWVRENLK--ERSP-YQEFINHWSSQEFGEYVKRIEKILNSLAEKHGEFEKERAREVFKEVSKFELIFW  202 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHCS--SCCT-THHHHHHHHSHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccc--cCCc-HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888887654432221111  1122 222232223444 46777777788877766664   457789999999999987


Q ss_pred             Hh
Q 039934          241 CD  242 (329)
Q Consensus       241 ~~  242 (329)
                      +.
T Consensus       203 d~  204 (206)
T d1rtwa_         203 DI  204 (206)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54


No 49 
>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=33.83  E-value=92  Score=23.61  Aligned_cols=132  Identities=11%  Similarity=0.016  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 039934          104 AIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLK  183 (329)
Q Consensus       104 ~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~  183 (329)
                      ..|..|.+.+...+.....+.+       .....|..+.-.+++.....+..++...++++..+|.++...+-...-...
T Consensus        79 ~~~~~e~~~~~~~~~~~~~~~~-------~~~~~p~~~~y~~~l~~~~~~~~~~~~~l~al~pc~~~Y~~~~~~~~~~~~  151 (215)
T d2f2ga1          79 ASLNDEIEWFKREGSKWDVDFS-------TVVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGN  151 (215)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCGG-------GCCCCHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCccHH-------hcccchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            4456777888787877754432       345567777767777665444445777777777778776544322211111


Q ss_pred             hcCCCcchHHHHHHHHhhh-hhHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHhhHhhc
Q 039934          184 KRGLMPGLTFSNELISRDE-GLHCDFACLLYSLLRNKLSE---ERVKGIVKEAVEIEREFVCDAL  244 (329)
Q Consensus       184 ~~~~l~g~~~~i~~I~rDE-~~H~~~~~~l~~~l~~~~~~---~~i~~~~~eav~~E~~~~~~~~  244 (329)
                      ..+  .-...=|..=..|| .-++.....++..+....++   +.+.+++..+.+.|..|-+...
T Consensus       152 ~~~--~~y~~Wi~~y~~~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~F~~~~~lE~~Fwd~Ay  214 (215)
T d2f2ga1         152 KTP--VELTGACHRWGNDGFKQYCSSVKNIAERCLENASGEVLGEAEDVLVRVLELEVAFWEMSR  214 (215)
T ss_dssp             TSS--SCCCHHHHHHSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCc--chHHHHHHHhCCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            111  01223333334555 57788778888877766664   4577899999999999987543


No 50 
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=33.80  E-value=59  Score=23.54  Aligned_cols=57  Identities=19%  Similarity=0.051  Sum_probs=41.1

Q ss_pred             hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHhh
Q 039934          184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---------EERVKGIVKEAVEIEREFV  240 (329)
Q Consensus       184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~i~~~~~eav~~E~~~~  240 (329)
                      +.--+++++..++-.+.+|..|..-....+..+-..+.         ...+.+++..+.+.|...+
T Consensus        33 ~~~~~~~la~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~~~~~~~~~~l~~~~~~e~~~~   98 (158)
T d2htna1          33 KNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGA   98 (158)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            44467999999999999999999988887777754332         1235666666666666544


No 51 
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}
Probab=32.92  E-value=80  Score=22.60  Aligned_cols=110  Identities=10%  Similarity=-0.077  Sum_probs=66.2

Q ss_pred             hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 039934           88 KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACV  167 (329)
Q Consensus        88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~l  167 (329)
                      ....-+....++..++..|..|+.-....+..+++.|.     +..+.  |.         ....+.....+..+.. --
T Consensus        33 ~~~~~~~la~~f~~~a~eE~~Ha~~l~~~i~~lGg~p~-----~~~~~--~~---------~~~~~~~e~l~~~l~~-E~   95 (154)
T d2fkza1          33 EDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPN-----LQELG--KL---------LIGEHTKEMLECDLKL-EQ   95 (154)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CSCCC--CC---------CCCSSHHHHHHHHHHH-HH
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc-----ccccc--cc---------ccCCCHHHHHHHHHHH-HH
Confidence            44445778888999999999999999998988876663     11110  00         0001111112211111 01


Q ss_pred             HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934          168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR  217 (329)
Q Consensus       168 Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~  217 (329)
                      +.+   ..+--+.-.+..-.=+++.+.++.|..||..|.......+..+.
T Consensus        96 ~~~---~~y~~~~~~a~~~~D~~t~~~l~~il~eE~~h~~~l~~~L~~~~  142 (154)
T d2fkza1          96 AGL---PDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLID  142 (154)
T ss_dssp             HHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111   11222223344555688999999999999999999988877663


No 52 
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]}
Probab=30.63  E-value=97  Score=22.89  Aligned_cols=61  Identities=7%  Similarity=0.040  Sum_probs=42.0

Q ss_pred             HHHhcC-CCcchHHHHHHHHhhhhhHHHHHHHHHHHHHcc--------CCH---HHHHHHHHHHHHHHHHhhH
Q 039934          181 WLKKRG-LMPGLTFSNELISRDEGLHCDFACLLYSLLRNK--------LSE---ERVKGIVKEAVEIEREFVC  241 (329)
Q Consensus       181 ~l~~~~-~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~--------~~~---~~i~~~~~eav~~E~~~~~  241 (329)
                      ++.+.+ -+||+++-++.-+.+|.-|..-...-+...-..        ++.   ..+.+++..++++|+..+.
T Consensus        35 ~f~~~~~~l~g~a~~f~~~s~EE~~Ha~~l~~yi~~rgg~~~~~~i~~~~~~~~~s~~e~~~~al~~Ek~v~~  107 (171)
T d1rcda_          35 YFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGRVFLQSVEKPERDDWANGLEALQTALKLQKSVNQ  107 (171)
T ss_dssp             HHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceecccCCCCCccccchhHHHHHHHHHHHHHHH
Confidence            444443 599999999999999999998555444333211        111   2477888888888887664


No 53 
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]}
Probab=30.34  E-value=95  Score=22.68  Aligned_cols=58  Identities=12%  Similarity=0.019  Sum_probs=39.9

Q ss_pred             HhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHcc--------CC--HHHHHHHHHHHHHHHHHhhH
Q 039934          183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNK--------LS--EERVKGIVKEAVEIEREFVC  241 (329)
Q Consensus       183 ~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~--------~~--~~~i~~~~~eav~~E~~~~~  241 (329)
                      ...| +||++.-++.-+.+|.-|..-...-+...-..        |.  ...+.+++..+.+.|++-+.
T Consensus        34 ~~~~-l~g~a~~f~~~s~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~~~~~~~al~~E~~v~~  101 (164)
T d1vlga_          34 DAEG-FKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQ  101 (164)
T ss_dssp             HHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             hhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4444 89999999999999999998655544333211        11  12477788888888877553


No 54 
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=26.39  E-value=11  Score=19.82  Aligned_cols=17  Identities=35%  Similarity=0.602  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHhHhHH
Q 039934          160 RLIAFACVEGIFFSGSF  176 (329)
Q Consensus       160 ~lv~~~~lEgi~f~s~F  176 (329)
                      --++|+++|.|+-|+-|
T Consensus        16 vtvafviieailtygrf   32 (32)
T d1rh5c_          16 VTVAFVIIEAILTYGRF   32 (32)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             EEEehhhHHHHHhhccC
Confidence            34678899999887643


No 55 
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=25.76  E-value=62  Score=23.04  Aligned_cols=36  Identities=22%  Similarity=0.216  Sum_probs=30.2

Q ss_pred             HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039934           85 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY  120 (329)
Q Consensus        85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~  120 (329)
                      ..+....+++++.++...+..|..|.+-|...++.+
T Consensus        92 ~~a~~egd~~~a~~f~~i~~~E~~Ha~~f~~~l~~l  127 (133)
T d1nnqa1          92 KAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKA  127 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677788899999999999999999999888876


No 56 
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}
Probab=22.77  E-value=1.2e+02  Score=21.44  Aligned_cols=57  Identities=18%  Similarity=0.040  Sum_probs=41.4

Q ss_pred             hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHhh
Q 039934          184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS---------EERVKGIVKEAVEIEREFV  240 (329)
Q Consensus       184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~i~~~~~eav~~E~~~~  240 (329)
                      ..--+++++..++.++.+|..|..-....+..+--.|.         ...+.+++..+.+.|.+.+
T Consensus        33 ~~~~~~~la~~f~~~a~eE~~Ha~~l~~~i~~lGg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~   98 (154)
T d2fkza1          33 EDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGL   98 (154)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccCCCHHHHHHHHHHHHHHHH
Confidence            34457999999999999999999988877766632221         2346677777777777655


No 57 
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=21.75  E-value=32  Score=18.67  Aligned_cols=15  Identities=7%  Similarity=0.496  Sum_probs=12.8

Q ss_pred             CCCCHHHHHHHHHHH
Q 039934          249 VGMNGALMSQYIEFV  263 (329)
Q Consensus       249 ~Gl~~~~~~~yi~y~  263 (329)
                      -|++++....|++|.
T Consensus        15 SGvSK~QFrEflef~   29 (35)
T d1b0na1          15 SGVSKKQFREFLDYQ   29 (35)
T ss_dssp             SCCCHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHH
Confidence            478999999999885


No 58 
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=20.29  E-value=1.4e+02  Score=21.31  Aligned_cols=110  Identities=12%  Similarity=-0.077  Sum_probs=62.0

Q ss_pred             hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 039934           88 KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACV  167 (329)
Q Consensus        88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~lv~~~~l  167 (329)
                      ....-+....++..++.+|.-|+......+..+++.|.     +......+           ...+....++..+.. --
T Consensus        33 ~~~~~~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~-----~~~~~~~~-----------~~~~~~e~l~~~l~~-E~   95 (160)
T d1jgca_          33 EDWGLAKMAKKSREESIEEMGHADKIIARILFLEGHPN-----LQKLDPLR-----------IGEGPRETLECDLAG-EH   95 (160)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CSCCCCCC-----------CCSSHHHHHHHHHHH-HH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-----cccccccc-----------CcCCHHHHHHHHHHH-HH
Confidence            34455777788888889999999998888888876552     11110000           000111111111110 01


Q ss_pred             HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039934          168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR  217 (329)
Q Consensus       168 Egi~f~s~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~  217 (329)
                      +.+-   .+--+.-.+....=+++...++.+.+||..|..+....+..+.
T Consensus        96 ~~~~---~~~~~~~~a~~~~D~~t~~~l~~~l~eee~h~~~l~~~l~~i~  142 (160)
T d1jgca_          96 DALK---LYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQISLYD  142 (160)
T ss_dssp             HHHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH---HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111   1111222333334488999999999999999998877765443


No 59 
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.20  E-value=1.4e+02  Score=20.99  Aligned_cols=46  Identities=7%  Similarity=0.124  Sum_probs=27.7

Q ss_pred             HHHHHHHhHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039934           73 ASDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLET  119 (329)
Q Consensus        73 ~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~  119 (329)
                      .++......+. .+...++++..|.........|++|+......+..
T Consensus        89 ~~E~~a~~~Y~-~~~~~~~d~~~r~la~~il~~ea~ha~~~r~~~~~  134 (142)
T d2ib0a1          89 RMENDGATAWR-AVVEHAETADDRVFASTALTESAVMATRWNRVLGA  134 (142)
T ss_dssp             HHHHHHHHHHH-HHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34433333332 35566677777777777777777777776666543


Done!