BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039940
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/446 (72%), Positives = 376/446 (84%), Gaps = 4/446 (0%)
Query: 1 LQSQLFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE 60
LQ+Q +P++ A ++ KLE LPAM+ GV+SDDN++QLEA TQFR+LLSIERS PI+E
Sbjct: 55 LQAQAPVPASAATGVD--KKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEE 112
Query: 61 VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP 120
VIQ+G+VPRFV+FL RED+P+LQFEAAW LTNIASGTS NTKV+IDHGAVPIFVKLL S
Sbjct: 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 172
Query: 121 SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180
SDDVREQAVWALGN+ SP CR+LVL AL+PLLAQLNEH +LSMLR TWTLSN C+
Sbjct: 173 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232
Query: 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240
GKPQP F+Q RP LPALA+LIH +DEEVL + CW LS LSDGTNDKIQAVIEAGVC LV
Sbjct: 233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292
Query: 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300
ELL HPSPSVLIPALRTVGNIVTGDD QTQC+I+H A+P LL+LL N KKSIKKE+CWT
Sbjct: 293 ELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352
Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
+SNITAGN+ QIQAVI+AG+I PLVNLLQ AEFDIKKEAAWAISNAT G+ +QIKYLV
Sbjct: 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVS 412
Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420
EGCIKPLCDLL+C D IVTVCL+GLENILKVGE K + GDVN ++++++ AEG +
Sbjct: 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLE 470
Query: 421 KIEDLKSHGNNGIREKAVTILETYWL 446
KIE+L+SH NN I EKAV ILE YW+
Sbjct: 471 KIENLQSHDNNEIYEKAVKILEAYWM 496
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/423 (74%), Positives = 362/423 (85%), Gaps = 2/423 (0%)
Query: 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQ 83
LPAM+ GV+SDDN++QLEA TQFR+LLSIERS PI+EVIQ+G+VPRFV+FL RED+P+LQ
Sbjct: 38 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQ 97
Query: 84 FEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143
FEAAW LTNIASGTS NTKV+IDHGAVPIFVKLL S SDDVREQAVWALGN+ SP CR
Sbjct: 98 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 157
Query: 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL 203
+LVL AL+PLLAQLNEH +LSMLR TWTLSN C+GKPQP F+Q RP LPALA+LIH
Sbjct: 158 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS 217
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+DEEVL + CW LS LSDGTNDKIQAVIEAGVC LVELL HPSPSVLIPALRTVGNIVT
Sbjct: 218 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 277
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVP 323
GDD QTQC+I+H A+P LL+LL N KKSIKKE+CWT+SNITAGN+ QIQAVI+AG+I P
Sbjct: 278 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGP 337
Query: 324 LVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCL 383
LVNLLQ AEFDIKKEAAWAISNAT G+ +QIKYLV EGCIKPLCDLL+C D IVTVCL
Sbjct: 338 LVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 397
Query: 384 KGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILET 443
+GLENILKVGE K + GDVN ++++++ AEG +KIE+L+SH NN I EKAV ILE
Sbjct: 398 EGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 455
Query: 444 YWL 446
YW+
Sbjct: 456 YWM 458
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/425 (55%), Positives = 293/425 (68%), Gaps = 5/425 (1%)
Query: 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA-GIVPRFVEFLLREDYPR 81
I M+ ++S QL A +FR+LLS E + PIDEVI G+V RFVEFL R++
Sbjct: 18 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 77
Query: 82 LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
LQFE+AWVLTNIASG S+ T+++I GAVPIF++LL+S +DV+EQAVWALGNI S
Sbjct: 78 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 137
Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP-FDQVRPVLPALAQL 200
CR+ VL L PLL ++ RL+M R W LSNLC+GK PP F +V P L L+ L
Sbjct: 138 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 197
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+ + D +VL + CW LS LSDG NDKIQAVI+AGVC LVELL H V+ PALR VGN
Sbjct: 198 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 257
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTGDD QTQ ++N + L L+++ K+SIKKE+CWT+SNITAGNR QIQ VIDA +
Sbjct: 258 IVTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 316
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
L+++LQ AEF +KEAAWAI+NAT G+ EQIKYLV GCIKPLCDLL D +IV
Sbjct: 317 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 376
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L GLENIL++GE + R T +N Y L+E A G KIE L+SH N I +KA +
Sbjct: 377 VALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 434
Query: 441 LETYW 445
+E Y+
Sbjct: 435 IEHYF 439
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/425 (55%), Positives = 294/425 (69%), Gaps = 5/425 (1%)
Query: 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA-GIVPRFVEFLLREDYPR 81
I M+ ++S QL A +FR+LLS E + PIDEVI G+V RFVEFL R++
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 82 LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
LQFE+AWVLTNIASG S+ T+++I GAVPIF++LL+S +DV+EQAVWALGNI S
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP-FDQVRPVLPALAQL 200
CR+ VL L PLL ++ RL+M R W LSNLC+GK PP F +V P L L+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+ + D +VL + CW LS LSDG NDKIQAVI+AGVC LVELL H V+ PALR VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTGDD QTQ ++N A+ L L+++ K+SIKKE+CWT+SNITAGNR QIQ VIDA +
Sbjct: 261 IVTGDDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
L+++LQ AEF +KEAAWAI+NAT G+ EQIKYLV GCIKPLCDLL D +IV
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L GLENIL++GE + R T +N Y L+E A G KIE L+SH N I +KA +
Sbjct: 380 VALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 437
Query: 441 LETYW 445
+E Y+
Sbjct: 438 IEHYF 442
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/427 (54%), Positives = 294/427 (68%), Gaps = 11/427 (2%)
Query: 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
LP M + SDD QL A +FR++LS E PID VIQAG+VPR VEF+ RE+ P L
Sbjct: 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 147
Query: 83 QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
Q EAAW LTNIASGTS TKV++D AVP+F++LL + S +V+EQA+WALGN+ S
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
R+ VL A+ P+L N + + S++R TWTLSNLC+G KPQP + V LP LA+LI
Sbjct: 208 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
+ D E L + CW +S LSDG + IQAVI+ + LVELL H S V PALR VGNI
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
VTG+D QTQ VIN G +P L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 327 VTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
PLV LL+ AE+ KKEA WAISNA+ G Q + I+YLV +GCIKPLCDLL AD I+
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
V L LENILK+GEA K RG I N+ A +E A G +KI + + + N+ I EKA
Sbjct: 446 EVTLDALENILKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 502
Query: 439 TILETYW 445
I+ETY+
Sbjct: 503 KIIETYF 509
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/427 (54%), Positives = 294/427 (68%), Gaps = 11/427 (2%)
Query: 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
LP M + SDD QL A +FR++LS E PID VIQAG+VPR VEF+ RE+ P L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 83 QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
Q EAAW LTNIASGTS TKV++D AVP+F++LL + S +V+EQA+WALGN+ S
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
R+ VL A+ P+L N + + S++R TWTLSNLC+G KPQP + V LP LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
+ D E L + CW +S LSDG + IQAVI+ + LVELL H S V PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
VTG+D QTQ VIN G +P L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
PLV LL+ AE+ KKEA WAISNA+ G Q + I+YLV +GCIKPLCDLL AD I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
V L LENILK+GEA K RG I N+ A +E A G +KI + + + N+ I EKA
Sbjct: 358 EVTLDALENILKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 439 TILETYW 445
I+ETY+
Sbjct: 415 KIIETYF 421
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 233/427 (54%), Positives = 294/427 (68%), Gaps = 11/427 (2%)
Query: 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
LP M + SDD QL A +FR++LS E PID VIQAG+VPR VEF+ RE+ P L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 83 QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
Q EAAW LTNIASGTS TKV++D AVP+F++LL + S +V+EQA+WALGN+ S
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
R+ VL A+ P+L N + + S++R TWTLSNLC+G KPQP + V LP LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
+ D E L + CW +S LSDG + IQAVI+ + LVELL H S V PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
VTG+D QTQ VIN G +P L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
PLV LL+ AE+ KKEA WAISNA+ G Q + I+YLV +GCIKPLCDLL AD I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
V L LENI+K+GEA K RG I N+ A +E A G +KI + + + N+ I EKA
Sbjct: 358 EVTLDALENIIKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 439 TILETYW 445
I+ETY+
Sbjct: 415 KIIETYF 421
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 234/427 (54%), Positives = 293/427 (68%), Gaps = 11/427 (2%)
Query: 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
LP M + SDD QL A +FR++LS E PID VIQAG+VPR VEF+ RE+ P L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 61
Query: 83 QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
Q EAAW LTNIASGTS TKV++D AVP+F++LL + S +V+EQA+WALGN+ S
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
R+ VL A+ P+L N + + S++R TWTLSNLC+G KPQP + V LP LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
+ D E L + CW +S LSDG + IQAVI+ + LVELL H S V PALR VGNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
VTG+D QTQ VIN G +P L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
PLV LL+ AE KKEA WAISNA+ G Q + I+YLV +GCIKPLCDLL AD I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
V L LENILK+GEA K RG I N+ A +E A G +KI + + + N+ I EKA
Sbjct: 360 EVTLDALENILKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 439 TILETYW 445
I+ETY+
Sbjct: 417 KIIETYF 423
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 234/427 (54%), Positives = 293/427 (68%), Gaps = 11/427 (2%)
Query: 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
LP M + SDD QL A +FR++LS E PID VIQAG+VPR VEF+ RE+ P L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 83 QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
Q EAAW LTNIASGTS TKV++D AVP+F++LL + S +V+EQA+WALGN+ S
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
R+ VL A+ P+L N + + S++R TWTLSNLC+G KPQP + V LP LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
+ D E L + CW +S LSDG + IQAVI+ + LVELL H S V PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
VTG+D QTQ VIN G +P L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
PLV LL+ AE KKEA WAISNA+ G Q + I+YLV +GCIKPLCDLL AD I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
V L LENILK+GEA K RG I N+ A +E A G +KI + + + N+ I EKA
Sbjct: 359 EVTLDALENILKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 439 TILETYW 445
I+ETY+
Sbjct: 416 KIIETYF 422
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 234/427 (54%), Positives = 293/427 (68%), Gaps = 11/427 (2%)
Query: 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
LP M + SDD QL A +FR++LS E PID VIQAG+VPR VEF+ RE+ P L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 61
Query: 83 QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
Q EAAW LTNIASGTS TKV++D AVP+F++LL + S +V+EQA+WALGN+ S
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
R+ VL A+ P+L N + + S++R TWTLSNLC+G KPQP + V LP LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
+ D E L + CW +S LSDG + IQAVI+ + LVELL H S V PALR VGNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
VTG+D QTQ VIN G +P L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
PLV LL+ AE KKEA WAISNA+ G Q + I+YLV +GCIKPLCDLL AD I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
V L LENILK+GEA K RG I N+ A +E A G +KI + + + N+ I EKA
Sbjct: 360 EVTLDALENILKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 439 TILETYW 445
I+ETY+
Sbjct: 417 KIIETYF 423
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 417 bits (1071), Expect = e-117, Method: Compositional matrix adjust.
Identities = 234/427 (54%), Positives = 293/427 (68%), Gaps = 11/427 (2%)
Query: 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-L 82
LP M + SDD QL A +FR++LS E PID VIQAG+VPR VEF+ RE+ P L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 83 QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC 142
Q EAAW LTNIASGTS TKV++D AVP+F++LL + S +V+EQA+WALGN+ S
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG-KPQPPFDQVRPVLPALAQLI 201
R+ VL A+ P+L N + + S++R TWTLSNLC+G KPQP + V LP LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
+ D E L + CW +S LSDG + IQAVI+ + LVELL H S V PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
VTG+D QTQ VIN G +P L LL+++ K++IKKE+CWT+SNITAGN +QIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIV 379
PLV LL+ AE KKEA WAISNA+ G Q + I+YLV +GCIKPLCDLL AD I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 380 TVCLKGLENILKVGEAKKN-RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438
V L LENILK+GEA K RG I N+ A +E A G +KI + + + N+ I EKA
Sbjct: 359 EVTLDALENILKMGEADKEARGLNI---NENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 439 TILETYW 445
I+ETY+
Sbjct: 416 KIIETYF 422
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 360 bits (924), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 271/424 (63%), Gaps = 13/424 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S + QL+A R+LLS E+ PID +I+AG++P+FV FL R D +QFE+
Sbjct: 13 IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 73 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 147 LHEEALIPLLAQLNEHARLSM----LRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLI 201
+ A+ PLLA L S+ LR TWTLSNLC+ K P PP D V +LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 202 HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261
H DD EVL + CW +S L+DG N++I V++ GV LV+LLG ++ PALR +GNI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321
VTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTV 381
LV++L A+F +KEA WA++N T GT EQI YLV G I+PL +LL D +I+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 382 CLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTIL 441
L + NI + E +G+ + + ++E G KIE L++H N + + +++++
Sbjct: 372 ILDAISNIFQAAEK-------LGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLI 424
Query: 442 ETYW 445
E Y+
Sbjct: 425 EKYF 428
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 360 bits (923), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 48 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 168 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 226
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 227 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 286
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 287 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 345
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 346 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 405
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 406 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 458
Query: 441 LETYW 445
+E Y+
Sbjct: 459 IEKYF 463
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 359 bits (922), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 420 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 472
Query: 441 LETYW 445
+E Y+
Sbjct: 473 IEKYF 477
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 359 bits (922), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 420 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 472
Query: 441 LETYW 445
+E Y+
Sbjct: 473 IEKYF 477
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 420 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 472
Query: 441 LETYW 445
+E Y+
Sbjct: 473 IEKYF 477
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 38 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 98 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 158 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 216
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 217 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 276
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 277 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 335
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 336 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 395
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 396 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 448
Query: 441 LETYW 445
+E Y+
Sbjct: 449 IEKYF 453
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 138 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 196
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 197 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 257 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 315
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 375
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 376 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 428
Query: 441 LETYW 445
+E Y+
Sbjct: 429 IEKYF 433
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 370 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 422
Query: 441 LETYW 445
+E Y+
Sbjct: 423 IEKYF 427
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 46 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 166 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 224
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 225 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 284
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 285 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 343
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 344 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 403
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 404 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 456
Query: 441 LETYW 445
+E Y+
Sbjct: 457 IEKYF 461
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 365 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 417
Query: 441 LETYW 445
+E Y+
Sbjct: 418 IEKYF 422
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 370 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 422
Query: 441 LETYW 445
+E Y+
Sbjct: 423 IEKYF 427
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 369 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 421
Query: 441 LETYW 445
+E Y+
Sbjct: 422 IEKYF 426
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 365 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 417
Query: 441 LETYW 445
+E Y+
Sbjct: 418 IEKYF 422
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 369 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 421
Query: 441 LETYW 445
+E Y+
Sbjct: 422 IEKYF 426
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 271/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +KEAAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 370 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 422
Query: 441 LETYW 445
+E Y+
Sbjct: 423 IEKYF 427
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 357 bits (917), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 195/425 (45%), Positives = 270/425 (63%), Gaps = 15/425 (3%)
Query: 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86
+V G+ S++ QL+A R+LLS E+ PID +I+AG++P+FV FL + D +QFE+
Sbjct: 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 87 AWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146
AW LTNIASGTS TK ++D GA+P F+ LLASP + EQAVWALGNI R+LV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 147 LHEEALIPLLAQLNEHARLSMLRIG-----TWTLSNLCKGK-PQPPFDQVRPVLPALAQL 200
+ A+ PLLA L LS L G TWTLSNLC+ K P PP D V +LP L +L
Sbjct: 201 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 259
Query: 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260
+H +D EVL + CW +S L+DG N++I+ V++ GV LV+LLG ++ PALR +GN
Sbjct: 260 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 319
Query: 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320
IVTG D QTQ VI+ GA+ +LL N K +I+KE+ WT+SNITAG + QIQ V++ GL
Sbjct: 320 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 378
Query: 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380
+ LV +L A+F +K AAWAI+N T GT EQI YLV G I+PL +LL D +I+
Sbjct: 379 VPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440
V L + NI + E +G+ + + ++E G KIE L+ H N + + ++ +
Sbjct: 439 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 491
Query: 441 LETYW 445
+E Y+
Sbjct: 492 IEKYF 496
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 138/250 (55%), Gaps = 17/250 (6%)
Query: 194 LPALAQLIHLDDEEVLRNVCWTLSN-LSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252
LP + Q ++ DD + + S LSDG N++IQAVI+AG LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312
AL + NI +G + Q Q VI+ GA+P L+ LL + +++ I +E+ W +SNI +G +QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131
Query: 313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL 372
QAVIDAG + LV LL I +EA WA+SN G EQI+ ++ G + L LL
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLS 190
Query: 373 CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNG 432
+ +I+ L L NI G N+ + V+ A +K+E L+SH N
Sbjct: 191 SPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 433 IREKAVTILE 442
I+++A LE
Sbjct: 238 IQKEAQEALE 247
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 117/197 (59%), Gaps = 2/197 (1%)
Query: 193 VLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252
LPAL QL+ +E++L+ W LSN++ G N++IQAVI+AG LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312
AL + NI +G + Q Q VI+ GA+P L+ LL + +++ I +E+ W +SNI +G +QI
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 173
Query: 313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL 372
QAVIDAG + LV LL I +EA WA+SN G EQ + + G ++ L L
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQS 232
Query: 373 CADPEIVTVCLKGLENI 389
+ +I + LE +
Sbjct: 233 HENEKIQKEAQEALEKL 249
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 127/232 (54%), Gaps = 12/232 (5%)
Query: 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQ 83
LP M + SDD QL A +F ++LS + + I VI AG +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 84 FEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143
EA W L+NIASG + + +ID GA+P V+LL+SP++ + ++A+WAL NI +
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPV-----LPALA 198
V+ AL P L QL +L+ W LSN+ G +Q++ V LPAL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPALV 186
Query: 199 QLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSV 250
QL+ +E++L+ W LSN++ G N++ QAV EAG L +L H + +
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 138/282 (48%), Gaps = 54/282 (19%)
Query: 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126
+P+ + L +D Q A + I S + + +ID GA+P V+LL+SP++ +
Sbjct: 14 LPQMTQQLNSDDMQE-QLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI-- 70
Query: 127 QAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP 186
L+ W LSN+ G
Sbjct: 71 -----------------------------------------LQEALWALSNIASGG---- 85
Query: 187 FDQVRPV-----LPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE 241
+Q++ V LPAL QL+ +E++L+ W LSN++ G N++IQAVI+AG LV+
Sbjct: 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145
Query: 242 LLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTV 301
LL P+ +L AL + NI +G + Q Q VI+ GA+P L+ LL + +++ I +E+ W +
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWAL 204
Query: 302 SNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAI 343
SNI +G +Q QAV +AG + L L I+KEA A+
Sbjct: 205 SNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 58 IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL 117
I VI AG +P V+ L + LQ EA W L+NIASG + + + + GA+ +L
Sbjct: 173 IQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231
Query: 118 ASPSDDVREQAVWALGNIVAH 138
+ ++ ++++A AL + +H
Sbjct: 232 SHENEKIQKEAQEALEKLQSH 252
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 115/197 (58%), Gaps = 4/197 (2%)
Query: 194 LPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIP 253
LP + Q ++ D++ L++ LS ++ G N++IQAVI+AG LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 254 ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQ 313
AL + NI +G + Q Q VI+ GA+P L+ LL + +++ I +E+ W +SNI +G +QIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 314 AVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC 373
AVIDAG + LV LL I +EA WA+SN G ++ K V+E +P + L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 374 ADPE-IVTVCLKGLENI 389
+ E I + LE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 98/199 (49%), Gaps = 8/199 (4%)
Query: 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIER--SLPIDEVIQAGIVPRFVEFLLREDYPR 81
LP MV + S D Q E + R+L I + I VI AG +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 82 LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
LQ EA W L+NIASG + + +ID GA+P V+LL+SP++ + ++A+WAL NI +
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK-GKPQPPFDQVRPVLPALAQL 200
V+ AL P L QL +L+ W LSN+ G Q + PAL QL
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 201 IHLDDEEVLRNVCWTLSNL 219
+E++ + L +
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR 360
+S I +G +QIQAVIDAG + LV LL I +EA WA+SN G EQI+ ++
Sbjct: 36 LSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVID 94
Query: 361 EGCIKPLCDLLLCADPEIVTVCLKGLENILKVG 393
G + L LL + +I+ L L NI G
Sbjct: 95 AGALPALVQLLSSPNEQILQEALWALSNIASGG 127
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 58 IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL 117
I VI AG +P V+ L + LQ EA W L+NIASG + + + + GA P +L
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGAEPALEQLQ 189
Query: 118 ASPSDDVREQAVWALGNIVAH 138
+SP++ ++++A AL I +H
Sbjct: 190 SSPNEKIQKEAQEALEKIQSH 210
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 114/196 (58%), Gaps = 2/196 (1%)
Query: 194 LPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIP 253
LP + Q ++ D++ L++ LS ++ G N++IQAVI+AG LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 254 ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQ 313
AL + NI +G + Q Q VI+ GA+P L+ LL + +++ I +E+ W +SNI +G +QIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 314 AVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC 373
AVIDAG + LV LL I +EA WA+SN G EQ + + G ++ L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSH 191
Query: 374 ADPEIVTVCLKGLENI 389
+ +I + LE +
Sbjct: 192 ENEKIQKEAQEALEKL 207
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 15/204 (7%)
Query: 239 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESC 298
+V+ L P L ALR + I +G + Q Q VI+ GA+P L+ LL + +++ I +E+
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEAL 75
Query: 299 WTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYL 358
W +SNI +G +QIQAVIDAG + LV LL I +EA WA+SN G EQI+ +
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAV 134
Query: 359 VREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEG 418
+ G + L LL + +I+ L L NI G N+ + V+ A
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGA 181
Query: 419 FKKIEDLKSHGNNGIREKAVTILE 442
+K+E L+SH N I+++A LE
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEALE 205
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 98/199 (49%), Gaps = 8/199 (4%)
Query: 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIER--SLPIDEVIQAGIVPRFVEFLLREDYPR 81
LP MV + S D Q E + R+L I + I VI AG +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 82 LQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141
LQ EA W L+NIASG + + +ID GA+P V+LL+SP++ + ++A+WAL NI +
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK-GKPQPPFDQVRPVLPALAQL 200
V+ AL P L QL +L+ W LSN+ G Q + L L QL
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 201 IHLDDEEVLRNVCWTLSNL 219
++E++ + L L
Sbjct: 189 QSHENEKIQKEAQEALEKL 207
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 58 IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL 117
I VI AG +P V+ L + LQ EA W L+NIASG + + + + GA+ +L
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189
Query: 118 ASPSDDVREQAVWALGNIVAH 138
+ ++ ++++A AL + +H
Sbjct: 190 SHENEKIQKEAQEALEKLQSH 210
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 112/197 (56%), Gaps = 4/197 (2%)
Query: 194 LPALAQLIHLDDEEVLRNVCWTLSN-LSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252
LP + Q ++ DD + + S LSDG N++IQAVI+AG LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312
AL + NI +G + Q Q VI+ GA+P L+ LL + +++ I +E+ W +SNI +G +QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131
Query: 313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL 372
QAVIDAG + LV LL I +EA WA+SN G EQ + + G ++ L L
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQS 190
Query: 373 CADPEIVTVCLKGLENI 389
+ +I + LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 102/191 (53%), Gaps = 15/191 (7%)
Query: 252 IPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQ 311
+ A R I++ + Q Q VI+ GA+P L+ LL + +++ I +E+ W +SNI +G +Q
Sbjct: 30 LSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQ 88
Query: 312 IQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL 371
IQAVIDAG + LV LL I +EA WA+SN G EQI+ ++ G + L LL
Sbjct: 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLL 147
Query: 372 LCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNN 431
+ +I+ L L NI G N+ + V+ A +K+E L+SH N
Sbjct: 148 SSPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENE 194
Query: 432 GIREKAVTILE 442
I+++A LE
Sbjct: 195 KIQKEAQEALE 205
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 101/197 (51%), Gaps = 4/197 (2%)
Query: 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQ 83
LP M + SDD QL A +F ++LS + + I VI AG +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 84 FEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143
EA W L+NIASG + + +ID GA+P V+LL+SP++ + ++A+WAL NI +
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK-GKPQPPFDQVRPVLPALAQLIH 202
V+ AL P L QL +L+ W LSN+ G Q + L L QL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 203 LDDEEVLRNVCWTLSNL 219
++E++ + L L
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 58 IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL 117
I VI AG +P V+ L + LQ EA W L+NIASG + + + + GA+ +L
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189
Query: 118 ASPSDDVREQAVWALGNIVAH 138
+ ++ ++++A AL + +H
Sbjct: 190 SHENEKIQKEAQEALEKLQSH 210
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 15/245 (6%)
Query: 150 EALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPA-----LAQLIHLD 204
E L+ LL + + R L+ + G P ++ ++ A L +L+
Sbjct: 5 EKLVKLLTSTDSETQKEAAR----DLAEIASG----PASAIKAIVDAGGVEVLVKLLTST 56
Query: 205 DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG 264
D EV + L+N++ G ++ I+A+++AG LV+LL V A R + NI +G
Sbjct: 57 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 116
Query: 265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPL 324
D + +++ G V L+ LL + + ++KE+ ++NI +G + I+A++DAG + L
Sbjct: 117 PDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVL 175
Query: 325 VNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLK 384
V LL + +++KEAA A++N +G IK +V G ++ L LL D E+ +
Sbjct: 176 VKLLTSTDSEVQKEAARALAN-IASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQR 234
Query: 385 GLENI 389
LENI
Sbjct: 235 ALENI 239
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 131/289 (45%), Gaps = 54/289 (18%)
Query: 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126
V + V+ L D Q EAA L IASG + K ++D G V + VKLL S +V++
Sbjct: 4 VEKLVKLLTSTDS-ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 127 QAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP 186
+A AL +N+ G P
Sbjct: 63 EAARAL-------------------------------------------ANIASG----P 75
Query: 187 FDQVRPVLPA-----LAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE 241
+ ++ ++ A L +L+ D EV + L+N++ G ++ I+A+++AG LV+
Sbjct: 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 135
Query: 242 LLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTV 301
LL V A R + NI +G D + +++ G V L+ LL + + ++KE+ +
Sbjct: 136 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARAL 194
Query: 302 SNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG 350
+NI +G I+A++DAG + L LL + +++KEA A+ N G
Sbjct: 195 ANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 119/281 (42%), Gaps = 55/281 (19%)
Query: 33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTN 92
S D+ Q EAA + S S I ++ AG V V+ L D +Q EAA L N
Sbjct: 13 STDSETQKEAARDLAEIASGPAS-AIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALAN 70
Query: 93 IASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEAL 152
IASG K ++D G V + VKLL S +V+++A AL NI +
Sbjct: 71 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-------------- 116
Query: 153 IPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPA-----LAQLIHLDDEE 207
P + ++ ++ A L +L+ D E
Sbjct: 117 ---------------------------------PDEAIKAIVDAGGVEVLVKLLTSTDSE 143
Query: 208 VLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF 267
V + L+N++ G ++ I+A+++AG LV+LL V A R + NI +G
Sbjct: 144 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS 203
Query: 268 QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN 308
+ +++ G V L LL + + ++KE+ + NI +G
Sbjct: 204 AIKAIVDAGGVEVLQKLLTSTDSE-VQKEAQRALENIKSGG 243
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+ +
Sbjct: 99 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 157
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
L I T L L G PQ + +R
Sbjct: 158 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 217
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
PA+ + +HL D + +++N WTL NLSD Q +E G+ G LV+LLG
Sbjct: 218 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 274
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
+V+ A + N+ T ++++ + ++
Sbjct: 275 SDDINVVTCAAGILSNL-TCNNYKNKMMV 302
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 70 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 128
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 129 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 186
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATK 348
LVN+++ ++ + W S K
Sbjct: 187 ALVNIMRTYTYE---KLLWTTSRVLK 209
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+ +
Sbjct: 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 159
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
L I T L L G PQ + +R
Sbjct: 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
PA+ + +HL D + +++N WTL NLSD Q +E G+ G LV+LLG
Sbjct: 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 276
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
+V+ A + N+ T ++++ + ++
Sbjct: 277 SDDINVVTCAAGILSNL-TCNNYKNKMMV 304
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 72 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 188
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATK 348
LVN+++ ++ + W S K
Sbjct: 189 ALVNIMRTYTYE---KLLWTTSRVLK 211
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+ +
Sbjct: 103 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 161
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
L I T L L G PQ + +R
Sbjct: 162 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 221
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
PA+ + +HL D + +++N WTL NLSD Q +E G+ G LV+LLG
Sbjct: 222 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 278
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
+V+ A + N+ T ++++ + ++
Sbjct: 279 SDDINVVTCAAGILSNL-TCNNYKNKMMV 306
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 74 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 132
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 133 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 190
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATK 348
LVN+++ ++ + W S K
Sbjct: 191 ALVNIMRTYTYE---KLLWTTSRVLK 213
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+ +
Sbjct: 90 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 148
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
L I T L L G PQ + +R
Sbjct: 149 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 208
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
PA+ + +HL D + +++N WTL NLSD Q +E G+ G LV+LLG
Sbjct: 209 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 265
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
+V+ A + N+ T ++++ + ++
Sbjct: 266 SDDINVVTCAAGILSNL-TCNNYKNKMMV 293
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 61 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 119
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 120 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 177
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATK 348
LVN+++ ++ + W S K
Sbjct: 178 ALVNIMRTYTYE---KLLWTTSRVLK 200
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+ +
Sbjct: 103 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 161
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
L I T L L G PQ + +R
Sbjct: 162 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 221
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
PA+ + +HL D + +++N WTL NLSD Q +E G+ G LV+LLG
Sbjct: 222 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 278
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
+V+ A + N+ T ++++ + ++
Sbjct: 279 SDDINVVTCAAGILSNL-TCNNYKNKMMV 306
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 74 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 132
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 133 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 190
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATK 348
LVN+++ ++ + W S K
Sbjct: 191 ALVNIMRTYTYE---KLLWTTSRVLK 213
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+ +
Sbjct: 99 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 157
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
L I T L L G PQ + +R
Sbjct: 158 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 217
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
PA+ + +HL D + +++N WTL NLSD Q +E G+ G LV+LLG
Sbjct: 218 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 274
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
+V+ A + N+ T ++++ + ++
Sbjct: 275 SDDINVVTCAAGILSNL-TCNNYKNKMMV 302
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 70 NDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 128
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 129 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 186
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATK 348
LVN+++ ++ + W S K
Sbjct: 187 ALVNIMRTYTYE---KLLWTTSRVLK 209
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+ +
Sbjct: 86 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 144
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
L I T L L G PQ + +R
Sbjct: 145 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 204
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
PA+ + +HL D + +++N WTL NLSD Q +E G+ G LV+LLG
Sbjct: 205 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 261
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
+V+ A + N+ T ++++ + ++
Sbjct: 262 SDDINVVTCAAGILSNL-TCNNYKNKMMV 289
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 57 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 115
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 116 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 173
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATK 348
LVN+++ ++ + W S K
Sbjct: 174 ALVNIMRTYTYE---KLLWTTSRVLK 196
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+ +
Sbjct: 86 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 144
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
L I T L L G PQ + +R
Sbjct: 145 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 204
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
PA+ + +HL D + +++N WTL NLSD Q +E G+ G LV+LLG
Sbjct: 205 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 261
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
+V+ A + N+ T ++++ + ++
Sbjct: 262 SDDINVVTCAAGILSNL-TCNNYKNKMMV 289
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 57 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 115
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 116 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 173
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATK 348
LVN+++ ++ + W S K
Sbjct: 174 ALVNIMRTYTYE---KLLWTTSRVLK 196
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+ +
Sbjct: 88 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 146
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
L I T L L G PQ + +R
Sbjct: 147 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 206
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
PA+ + +HL D + +++N WTL NLSD Q +E G+ G LV+LLG
Sbjct: 207 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 263
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
+V+ A + N+ T ++++ + ++
Sbjct: 264 SDDINVVTCAAGILSNL-TCNNYKNKMMV 291
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 59 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 117
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 118 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 175
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATK 348
LVN+++ ++ + W S K
Sbjct: 176 ALVNIMRTYTYE---KLLWTTSRVLK 198
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+ +
Sbjct: 102 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 160
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
L I T L L G PQ + +R
Sbjct: 161 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 220
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
PA+ + +HL D + +++N WTL NLSD Q +E G+ G LV+LLG
Sbjct: 221 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 277
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
+V+ A + N+ T ++++ + ++
Sbjct: 278 SDDINVVTCAAGILSNL-TCNNYKNKMMV 305
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 73 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 131
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 132 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 189
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATK 348
LVN+++ ++ + W S K
Sbjct: 190 ALVNIMRTYTYE---KLLWTTSRVLK 212
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+ +
Sbjct: 104 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 162
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
L I T L L G PQ + +R
Sbjct: 163 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 222
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
PA+ + +HL D + +++N WTL NLSD Q +E G+ G LV+LLG
Sbjct: 223 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 279
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
+V+ A + N+ T ++++ + ++
Sbjct: 280 SDDINVVTCAAGILSNL-TCNNYKNKMMV 307
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 75 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 133
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 134 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 191
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATK 348
LVN+++ ++ + W S K
Sbjct: 192 ALVNIMRTYTYE---KLLWTTSRVLK 214
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+ +
Sbjct: 105 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 163
Query: 168 LRIGTWTLSNLCKGK------------PQPPFDQVRPVL--------------------- 194
L I T L L G PQ + +R
Sbjct: 164 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 223
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
PA+ + +HL D + +++N WTL NLSD Q +E G+ G LV+LLG
Sbjct: 224 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 280
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
+V+ A + N+ T ++++ + ++
Sbjct: 281 SDDINVVTCAAGILSNL-TCNNYKNKMMV 308
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 76 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 134
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 135 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 192
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATK 348
LVN+++ ++ + W S K
Sbjct: 193 ALVNIMRTYTYE---KLLWTTSRVLK 215
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+ +
Sbjct: 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF 156
Query: 168 LRIGTWTLS------------NLCKGKPQPPFDQVRPVL--------------------- 194
L I T L L G PQ + +R
Sbjct: 157 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216
Query: 195 -PALAQL-------IHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG 244
PA+ + +HL D + +++N WTL NLSD Q +E G+ G LV+LLG
Sbjct: 217 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGME-GLLGTLVQLLG 273
Query: 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVI 273
+V+ A + N+ T ++++ + ++
Sbjct: 274 SDDINVVTCAAGILSNL-TCNNYKNKMMV 301
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 9/208 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 69 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 127
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 128 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 185
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATKAGT--QEQIKYLVREGCIKPLCDLLLCADPEIVT 380
LVN+++ ++ + W S K + +V G ++ L L +V
Sbjct: 186 ALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQ 408
CL L N+ ++ +G + Q
Sbjct: 243 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 270
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 22/135 (16%)
Query: 91 TNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEE 150
TN+ T+ V+ D +P+ + LL P+ DVR A +A+ + R +
Sbjct: 142 TNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIR------D 195
Query: 151 ALIPLLAQLNEHARLSML-----RIGTWTLSNLCKG-KPQPPFDQV---------RPVLP 195
+ L NE R+ + R LS LC K +D + + +LP
Sbjct: 196 CFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLP 255
Query: 196 AL-AQLIHLDDEEVL 209
L L DD E++
Sbjct: 256 VLDTXLYKFDDNEII 270
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 9/208 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV +LG P SVL A+ T+ N++
Sbjct: 205 NDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + ++ALL + K + C + + GN++ ++ +G
Sbjct: 264 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 321
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATKAGT--QEQIKYLVREGCIKPLCDLLLCADPEIVT 380
LVN+++ ++ + W S K + +V G ++ L L +V
Sbjct: 322 ALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 378
Query: 381 VCLKGLENILKVGEAKKNRGSTIGDVNQ 408
CL L N+ ++ +G + Q
Sbjct: 379 NCLWTLRNLSDAATKQEGMEGLLGTLVQ 406
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 68 NDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 126
Query: 264 GDDFQTQCVINHGAVPYLLALL 285
+ V G + ++ALL
Sbjct: 127 HQEGAKMAVRLAGGLQKMVALL 148
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE 161
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+
Sbjct: 97 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 150
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV++LG P SVL A+ T+ N++
Sbjct: 68 NDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 126
Query: 264 GDDFQTQCVINHGAVPYLLALL 285
+ V G + ++ALL
Sbjct: 127 HQEGAKMAVRLAGGLQKMVALL 148
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE 161
G +P VK+L SP D V A+ L N++ H G + V L ++A LN+
Sbjct: 97 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 150
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 201 IHLDDEEVLRNVCWTLSNLS-DGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPA----- 254
+ + E L++V L NLS T +K G LV L + S + +
Sbjct: 180 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 239
Query: 255 --LRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312
LR V +++ ++ Q + + + LL L +H +I +C T+ N++A N K
Sbjct: 240 GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQ 298
Query: 313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN 345
+A+ D G + L NL+ I +A A+ N
Sbjct: 299 EALWDXGAVSXLKNLIHSKHKXIAXGSAAALRN 331
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 201 IHLDDEEVLRNVCWTLSNLS-DGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPA----- 254
+ + E L++V L NLS T +K G LV L + S + +
Sbjct: 189 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 248
Query: 255 --LRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312
LR V +++ ++ Q + + + LL L +H +I +C T+ N++A N K
Sbjct: 249 GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQ 307
Query: 313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN 345
+A+ D G + L NL+ I +A A+ N
Sbjct: 308 EALWDXGAVSXLKNLIHSKHKXIAXGSAAALRN 340
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 104/269 (38%), Gaps = 42/269 (15%)
Query: 82 LQFEAAWVLTNIASGTSVNTKVLID-HGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP 140
L+ A LTN+ G N L G + V L S S+D+++ L N+ +
Sbjct: 102 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 161
Query: 141 GCRNLVLHE----EALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPA 196
L E +AL+ ++ + + L + W LS C + V A
Sbjct: 162 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD----ICAVDGA 217
Query: 197 LAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALR 256
LA L+ L+ + A+IE+G G + LR
Sbjct: 218 LAFLV---------------GTLTYRSQTNTLAIIESG--GGI---------------LR 245
Query: 257 TVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVI 316
V +++ ++ Q + + + LL L +H +I +C T+ N++A N K +A+
Sbjct: 246 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 304
Query: 317 DAGLIVPLVNLLQDAEFDIKKEAAWAISN 345
D G + L NL+ I +A A+ N
Sbjct: 305 DMGAVSMLKNLIHSKHKMIAMGSAAALRN 333
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 104/269 (38%), Gaps = 42/269 (15%)
Query: 82 LQFEAAWVLTNIASGTSVNTKVLID-HGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP 140
L+ A LTN+ G N L G + V L S S+D+++ L N+ +
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 275
Query: 141 GCRNLVLHE----EALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPA 196
L E +AL+ ++ + + L + W LS C + V A
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA----DICAVDGA 331
Query: 197 LAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALR 256
LA L+ L+ + A+IE+G G + LR
Sbjct: 332 LAFLV---------------GTLTYRSQTNTLAIIESG--GGI---------------LR 359
Query: 257 TVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVI 316
V +++ ++ Q + + + LL L +H +I +C T+ N++A N K +A+
Sbjct: 360 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 418
Query: 317 DAGLIVPLVNLLQDAEFDIKKEAAWAISN 345
D G + L NL+ I +A A+ N
Sbjct: 419 DMGAVSMLKNLIHSKHKMIAMGSAAALRN 447
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263
+D E R TL NLS + + A+ ++G LV+ LG P SVL A+ T+ N++
Sbjct: 14 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLL 72
Query: 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIK-KESCWTVSNITAGNRKQIQAVIDAGLIV 322
+ V G + +ALL + K + C + + GN++ ++ +G
Sbjct: 73 HQEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQ 130
Query: 323 PLVNLLQDAEFDIKKEAAWAISNATK 348
LVN+ + ++ + W S K
Sbjct: 131 ALVNIXRTYTYE---KLLWTTSRVLK 153
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 104/269 (38%), Gaps = 42/269 (15%)
Query: 82 LQFEAAWVLTNIASGTSVNTKVLID-HGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP 140
L+ A LTN+ G N L G + V L S S+D+++ L N+ +
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 141 GCRNLVLHE----EALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPA 196
L E +AL+ ++ + + L + W LS C + V A
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA----DICAVDGA 215
Query: 197 LAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALR 256
LA L+ L+ + A+IE+G G + LR
Sbjct: 216 LAFLV---------------GTLTYRSQTNTLAIIESG--GGI---------------LR 243
Query: 257 TVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVI 316
V +++ ++ Q + + + LL L +H +I +C T+ N++A N K +A+
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302
Query: 317 DAGLIVPLVNLLQDAEFDIKKEAAWAISN 345
D G + L NL+ I +A A+ N
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 104/269 (38%), Gaps = 42/269 (15%)
Query: 82 LQFEAAWVLTNIASGTSVNTKVLID-HGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP 140
L+ A LTN+ G N L G + V L S S+D+++ L N+ +
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 141 GCRNLVLHE----EALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPA 196
L E +AL+ ++ + + L + W LS C + V A
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA----DICAVDGA 215
Query: 197 LAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALR 256
LA L+ L+ + A+IE+G G + LR
Sbjct: 216 LAFLV---------------GTLTYRSQTNTLAIIESG--GGI---------------LR 243
Query: 257 TVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVI 316
V +++ ++ Q + + + LL L +H +I +C T+ N++A N K +A+
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302
Query: 317 DAGLIVPLVNLLQDAEFDIKKEAAWAISN 345
D G + L NL+ I +A A+ N
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 112/285 (39%), Gaps = 49/285 (17%)
Query: 68 PRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLI---DHGAVPIFVKLLASPSDDV 124
P+ V ++R + A T+I S + + L+ G +P V++L+SP + V
Sbjct: 60 PQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVESV 119
Query: 125 REQAVWALGNIVAHSPGCRNLVLHEEAL---------------------IPLLAQLNEHA 163
A+ L N++ + G + V + L + LLA N+ +
Sbjct: 120 LFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQES 179
Query: 164 RLSMLRIG-----------------TWTLSNLCKGKPQPPFDQVRPV----LPALAQLIH 202
+L +L G WT S + K P ++ V + AL + +
Sbjct: 180 KLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEAGGMQALGKHLT 239
Query: 203 LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIV 262
+ +++N WTL NLSD Q +E+ V LV L +VL A T+ N+
Sbjct: 240 SNSPRLVQNCLWTLRNLSDVATK--QEGLES-VLKILVNQLSVDDVNVLTCATGTLSNLT 296
Query: 263 TGDDFQTQCVINHGAVPYLL-ALLINNHKKSIKKESCWTVSNITA 306
+ V + V L+ A+L K I + + + ++T+
Sbjct: 297 CNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTS 341
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 110 VPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLR 169
+P + + +P R+ AV A G+I+ P L +P L +L + + +
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGSIL-EGPEPNQLKPLVIQAMPTLIELMKDPSVVVRD 426
Query: 170 IGTWTLSNLCKGKPQPPFDQVR--PVLPALAQLIHLDDEEVLRNVCWTLSNLSDG 222
WT+ +C+ P+ + V P+L L + + + V NVCW S+L++
Sbjct: 427 TTAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 110 VPIFVKLLASPSDDVREQAVWALGNIVA--HSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
+P + + +P R+ AV A G I+ + LV+ +P L +L + + +
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVV 424
Query: 168 LRIGTWTLSNLCKGKPQPPFDQVR--PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND 225
WT+ +C+ P+ + V P+L L + + + V NVCW S+L++ +
Sbjct: 425 RDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPR-VASNVCWAFSSLAEAAYE 483
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE--HARLS 166
A+P ++L+ PS VR+ A W +G I P +++ L PLL L E A
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 167 MLRIGTWTLSNLCKG 181
+ W S+L +
Sbjct: 466 VASNVCWAFSSLAEA 480
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 110 VPIFVKLLASPSDDVREQAVWALGNIVA--HSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
+P + + +P R+ AV A G I+ + LV+ +P L +L + + +
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVV 424
Query: 168 LRIGTWTLSNLCKGKPQPPFDQVR--PVLPALAQLIHLDDEEVLRNVCWTLSNLSDG 222
WT+ +C+ P+ + V P+L L + + + V NVCW S+L++
Sbjct: 425 RDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE 161
A+P ++L+ PS VR+ A W +G I P +++ L PLL L E
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIE 458
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 110 VPIFVKLLASPSDDVREQAVWALGNIVA--HSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
+P + + +P R+ AV A G I+ + LV+ +P L +L + + +
Sbjct: 243 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVV 299
Query: 168 LRIGTWTLSNLCKGKPQPPFDQVR--PVLPALAQLIHLDDEEVLRNVCWTLSNLSDG 222
WT+ +C+ P+ + V P+L L + + + V NVCW S+L++
Sbjct: 300 RDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 355
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE 161
A+P ++L+ PS VR+ A W +G I P +++ L PLL L E
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIE 333
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 110 VPIFVKLLASPSDDVREQAVWALGNIVA--HSPGCRNLVLHEEALIPLLAQLNEHARLSM 167
+P + + +P R+ AV A G I+ + LV+ +P L +L + + +
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVV 424
Query: 168 LRIGTWTLSNLCKGKPQPPFDQVR--PVLPALAQLIHLDDEEVLRNVCWTLSNLSDG 222
WT+ +C+ P+ + V P+L L + + + V NVCW S+L++
Sbjct: 425 RDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE 161
A+P ++L+ PS VR+ A W +G I P +++ L PLL L E
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIE 458
>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 945
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 20/123 (16%)
Query: 74 LLREDYPRLQFEAAWVLTNIASGTSVNTKV-LIDHGAVPIFVKLLASPSDDVREQAVWAL 132
+L D L++ A+ + +GT N+ V + H AV + +DDVR AV AL
Sbjct: 539 MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-------SDSNDDVRRAAVIAL 591
Query: 133 GNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGT-WTLSNLCKGKP-QPPFDQV 190
G + +L + +P + QL + + +R GT + L C GK Q D +
Sbjct: 592 GFV----------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 641
Query: 191 RPV 193
P+
Sbjct: 642 DPL 644
>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2
pdb|4ADY|B Chain B, Crystal Structure Of 26s Proteasome Subunit Rpn2
Length = 963
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 20/122 (16%)
Query: 75 LREDYPRLQFEAAWVLTNIASGTSVNTKV-LIDHGAVPIFVKLLASPSDDVREQAVWALG 133
L D L++ A+ + +GT N+ V + H AV + +DDVR AV ALG
Sbjct: 551 LASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-------SDSNDDVRRAAVIALG 603
Query: 134 NIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGT-WTLSNLCKGKP-QPPFDQVR 191
+ +L + +P + QL + + +R GT + L C GK Q D +
Sbjct: 604 FV----------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653
Query: 192 PV 193
P+
Sbjct: 654 PL 655
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126
+P+ V++L +D + Q A+ + + + + G + V LL SP+ +V++
Sbjct: 4 IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 127 QAVWALGNIVAHS 139
A AL N+V S
Sbjct: 63 AAAGALRNLVFRS 75
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 130 WALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQ 189
+AL I +P ++ + + +L+ N +L+ L N + + F
Sbjct: 129 YALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKY 178
Query: 190 VRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI 231
V P LP + L+H DE V + L +L+ NDK++ V+
Sbjct: 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLA-TLNDKLRKVV 219
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE 161
A+P ++L+ PS VR+ A W +G I P +++ L PLL L E
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIE 458
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,026,446
Number of Sequences: 62578
Number of extensions: 528570
Number of successful extensions: 2169
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 166
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)