Query 039940
Match_columns 449
No_of_seqs 316 out of 2426
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 03:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 2E-62 4.2E-67 438.4 46.1 423 21-448 65-488 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 7.7E-62 1.7E-66 402.8 33.4 425 21-448 70-498 (526)
3 KOG0166 Karyopherin (importin) 100.0 5.7E-47 1.2E-51 339.2 32.4 380 13-396 100-491 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 7.3E-46 1.6E-50 307.9 23.6 380 10-393 102-498 (526)
5 PLN03200 cellulose synthase-in 100.0 1.4E-39 3E-44 333.7 44.9 409 18-448 185-640 (2102)
6 PLN03200 cellulose synthase-in 100.0 3.4E-39 7.5E-44 330.8 44.7 418 19-447 401-861 (2102)
7 KOG4224 Armadillo repeat prote 100.0 1.3E-31 2.9E-36 225.1 25.0 366 19-395 123-497 (550)
8 KOG4224 Armadillo repeat prote 100.0 8.6E-32 1.9E-36 226.3 22.6 367 21-397 84-452 (550)
9 PF05804 KAP: Kinesin-associat 100.0 3.3E-26 7.1E-31 217.9 33.5 389 16-425 284-677 (708)
10 PF05804 KAP: Kinesin-associat 100.0 2.9E-25 6.3E-30 211.4 37.8 388 25-442 253-645 (708)
11 KOG0168 Putative ubiquitin fus 99.9 8.7E-20 1.9E-24 169.6 30.3 391 23-430 168-656 (1051)
12 KOG1048 Neural adherens juncti 99.9 3.9E-20 8.4E-25 172.5 26.7 379 7-395 220-688 (717)
13 KOG1048 Neural adherens juncti 99.9 2.6E-19 5.6E-24 167.0 28.2 364 66-447 234-685 (717)
14 PF10508 Proteasom_PSMB: Prote 99.8 5.5E-16 1.2E-20 147.0 38.9 395 25-443 41-459 (503)
15 KOG4500 Rho/Rac GTPase guanine 99.8 4.8E-18 1E-22 147.0 20.3 377 35-430 55-458 (604)
16 KOG2122 Beta-catenin-binding p 99.8 1.9E-17 4E-22 161.8 26.1 369 20-395 195-605 (2195)
17 PF10508 Proteasom_PSMB: Prote 99.8 5.6E-16 1.2E-20 146.9 35.8 367 68-447 41-421 (503)
18 KOG4199 Uncharacterized conser 99.8 1E-16 2.2E-21 134.5 24.9 310 33-349 118-445 (461)
19 KOG4199 Uncharacterized conser 99.8 8.8E-16 1.9E-20 129.0 30.1 319 63-390 102-443 (461)
20 KOG1222 Kinesin associated pro 99.8 1E-15 2.2E-20 134.7 29.5 391 18-432 300-698 (791)
21 KOG4500 Rho/Rac GTPase guanine 99.8 1.8E-15 3.9E-20 131.2 27.0 401 21-437 86-510 (604)
22 KOG2171 Karyopherin (importin) 99.7 2.1E-14 4.5E-19 139.5 32.5 365 21-395 117-553 (1075)
23 KOG2122 Beta-catenin-binding p 99.7 8E-16 1.7E-20 150.7 22.4 327 20-349 233-602 (2195)
24 KOG1293 Proteins containing ar 99.7 2.6E-14 5.7E-19 130.6 30.0 403 28-446 15-533 (678)
25 KOG1222 Kinesin associated pro 99.7 3.5E-14 7.6E-19 125.1 28.6 377 33-439 274-656 (791)
26 KOG1293 Proteins containing ar 99.7 8.9E-15 1.9E-19 133.6 25.2 375 17-395 46-537 (678)
27 PRK09687 putative lyase; Provi 99.7 4.9E-15 1.1E-19 128.9 22.2 256 65-388 23-279 (280)
28 PRK09687 putative lyase; Provi 99.7 1E-14 2.3E-19 126.9 22.8 258 19-345 20-279 (280)
29 KOG2171 Karyopherin (importin) 99.7 6.2E-13 1.3E-17 129.5 34.4 397 22-442 79-542 (1075)
30 PF04826 Arm_2: Armadillo-like 99.7 4.9E-14 1.1E-18 119.7 22.7 238 191-437 11-253 (254)
31 KOG2023 Nuclear transport rece 99.7 3.1E-14 6.7E-19 130.0 22.6 349 28-394 96-508 (885)
32 KOG2023 Nuclear transport rece 99.7 1.5E-14 3.2E-19 132.0 20.5 353 21-393 127-548 (885)
33 PRK13800 putative oxidoreducta 99.6 1.5E-13 3.1E-18 140.0 28.4 277 20-387 619-895 (897)
34 PF04826 Arm_2: Armadillo-like 99.6 9.8E-14 2.1E-18 117.9 20.2 196 62-264 9-206 (254)
35 PRK13800 putative oxidoreducta 99.6 2.4E-12 5.1E-17 131.2 28.9 276 64-442 620-895 (897)
36 PF01602 Adaptin_N: Adaptin N 99.5 6.8E-12 1.5E-16 122.3 27.1 330 22-395 42-373 (526)
37 cd00256 VATPase_H VATPase_H, r 99.5 4.6E-11 1E-15 108.3 29.6 322 108-445 53-424 (429)
38 cd00020 ARM Armadillo/beta-cat 99.5 4.1E-13 8.8E-18 103.0 13.8 118 230-348 3-120 (120)
39 cd00020 ARM Armadillo/beta-cat 99.5 6E-13 1.3E-17 102.0 14.0 119 60-180 2-120 (120)
40 PF01602 Adaptin_N: Adaptin N 99.5 8.7E-11 1.9E-15 114.6 31.1 356 25-443 7-366 (526)
41 PTZ00429 beta-adaptin; Provisi 99.5 9.7E-10 2.1E-14 107.5 37.0 293 67-394 107-400 (746)
42 KOG0168 Putative ubiquitin fus 99.5 5.7E-11 1.2E-15 111.9 25.7 343 22-372 211-653 (1051)
43 cd00256 VATPase_H VATPase_H, r 99.4 1.4E-10 3E-15 105.2 26.0 325 65-391 53-425 (429)
44 KOG1241 Karyopherin (importin) 99.4 7.2E-10 1.6E-14 103.6 26.9 369 21-395 171-588 (859)
45 KOG1241 Karyopherin (importin) 99.4 4.4E-10 9.4E-15 105.0 24.9 361 25-397 93-483 (859)
46 PTZ00429 beta-adaptin; Provisi 99.4 8.6E-09 1.9E-13 101.0 35.0 331 20-391 30-362 (746)
47 KOG2160 Armadillo/beta-catenin 99.3 7.5E-10 1.6E-14 95.6 21.9 190 204-395 95-286 (342)
48 KOG0946 ER-Golgi vesicle-tethe 99.2 6.3E-08 1.4E-12 91.3 31.2 325 66-396 23-404 (970)
49 KOG0213 Splicing factor 3b, su 99.2 2.9E-10 6.2E-15 105.8 15.2 346 23-392 717-1066(1172)
50 KOG2759 Vacuolar H+-ATPase V1 99.2 1.7E-08 3.7E-13 88.6 25.2 326 65-392 65-439 (442)
51 KOG2759 Vacuolar H+-ATPase V1 99.2 2.9E-09 6.3E-14 93.3 20.0 304 24-349 116-439 (442)
52 KOG0946 ER-Golgi vesicle-tethe 99.2 7.6E-08 1.7E-12 90.7 29.5 326 19-350 19-401 (970)
53 KOG1059 Vesicle coat complex A 99.2 7.5E-08 1.6E-12 89.9 28.8 226 16-264 138-366 (877)
54 PF03224 V-ATPase_H_N: V-ATPas 99.2 1.7E-09 3.6E-14 97.0 17.7 229 152-383 57-306 (312)
55 KOG2160 Armadillo/beta-catenin 99.2 4.5E-09 9.7E-14 90.9 18.3 188 162-349 94-283 (342)
56 PF03224 V-ATPase_H_N: V-ATPas 99.2 1.3E-09 2.8E-14 97.8 15.7 227 110-339 57-305 (312)
57 KOG1062 Vesicle coat complex A 99.1 6.6E-08 1.4E-12 91.4 24.9 370 24-440 144-575 (866)
58 KOG0212 Uncharacterized conser 99.1 4.3E-08 9.3E-13 89.0 21.6 357 21-393 83-446 (675)
59 COG5215 KAP95 Karyopherin (imp 99.1 2.6E-07 5.6E-12 84.3 26.5 373 6-392 303-712 (858)
60 COG5181 HSH155 U2 snRNP splice 99.1 3.8E-09 8.2E-14 96.6 14.5 266 108-393 604-872 (975)
61 COG5215 KAP95 Karyopherin (imp 99.1 4.8E-08 1E-12 88.8 20.9 356 24-395 135-533 (858)
62 KOG1789 Endocytosis protein RM 99.1 3.1E-07 6.8E-12 89.3 27.2 330 37-373 1740-2141(2235)
63 KOG0212 Uncharacterized conser 99.0 2.3E-08 5E-13 90.7 17.3 321 62-395 81-410 (675)
64 KOG1242 Protein containing ada 99.0 9.6E-07 2.1E-11 81.8 27.4 315 66-396 97-449 (569)
65 KOG0213 Splicing factor 3b, su 99.0 1.6E-06 3.4E-11 81.6 27.5 385 22-442 636-1061(1172)
66 KOG1517 Guanine nucleotide bin 99.0 8.9E-08 1.9E-12 92.9 19.3 270 35-315 449-741 (1387)
67 KOG1824 TATA-binding protein-i 98.9 8.4E-07 1.8E-11 85.6 24.1 355 26-395 9-406 (1233)
68 KOG4413 26S proteasome regulat 98.9 1.9E-05 4.2E-10 67.5 28.6 359 26-390 86-483 (524)
69 KOG1062 Vesicle coat complex A 98.9 2.3E-06 4.9E-11 81.4 25.5 287 69-374 111-453 (866)
70 KOG0211 Protein phosphatase 2A 98.9 1.1E-06 2.3E-11 85.8 24.0 389 17-442 232-660 (759)
71 KOG1517 Guanine nucleotide bin 98.9 1.8E-07 3.9E-12 90.9 18.1 248 22-273 472-742 (1387)
72 KOG1061 Vesicle coat complex A 98.8 9.3E-07 2E-11 83.9 20.8 306 18-349 82-416 (734)
73 COG5369 Uncharacterized conser 98.8 3.5E-08 7.7E-13 89.0 10.8 282 59-346 425-739 (743)
74 KOG1824 TATA-binding protein-i 98.8 2.4E-05 5.1E-10 76.0 29.6 356 21-396 650-1100(1233)
75 KOG2973 Uncharacterized conser 98.8 8.5E-06 1.8E-10 69.0 23.4 271 153-446 6-315 (353)
76 KOG1061 Vesicle coat complex A 98.8 3.2E-06 7E-11 80.3 23.1 303 67-396 88-420 (734)
77 KOG1242 Protein containing ada 98.8 2.8E-05 6.1E-10 72.4 27.8 313 21-349 95-445 (569)
78 KOG3678 SARM protein (with ste 98.8 6E-07 1.3E-11 80.0 16.3 269 21-306 179-452 (832)
79 KOG2973 Uncharacterized conser 98.7 6.4E-06 1.4E-10 69.8 20.3 271 24-306 5-315 (353)
80 COG5369 Uncharacterized conser 98.7 1.4E-07 3E-12 85.3 10.8 311 126-444 407-739 (743)
81 KOG1059 Vesicle coat complex A 98.7 9.7E-06 2.1E-10 76.3 22.9 216 152-393 146-367 (877)
82 PF05536 Neurochondrin: Neuroc 98.7 6.5E-05 1.4E-09 72.2 29.0 383 21-424 4-458 (543)
83 TIGR02270 conserved hypothetic 98.7 1.2E-05 2.5E-10 74.0 22.9 243 22-349 54-297 (410)
84 COG5181 HSH155 U2 snRNP splice 98.7 1.3E-05 2.8E-10 74.2 22.3 337 66-446 605-947 (975)
85 KOG3678 SARM protein (with ste 98.7 9E-07 2E-11 78.9 14.5 186 228-430 174-361 (832)
86 PF14664 RICTOR_N: Rapamycin-i 98.6 1.6E-05 3.4E-10 72.3 22.6 328 95-445 12-363 (371)
87 KOG1060 Vesicle coat complex A 98.6 0.00021 4.5E-09 68.4 28.2 256 73-354 151-464 (968)
88 KOG1060 Vesicle coat complex A 98.6 0.00027 5.8E-09 67.7 28.6 364 25-446 38-458 (968)
89 KOG2259 Uncharacterized conser 98.5 6.2E-06 1.3E-10 76.8 16.9 223 155-393 203-441 (823)
90 KOG4646 Uncharacterized conser 98.5 3.2E-06 6.9E-11 62.3 11.5 154 277-446 17-170 (173)
91 KOG1789 Endocytosis protein RM 98.5 0.00015 3.3E-09 71.5 25.1 303 21-331 1770-2142(2235)
92 KOG1077 Vesicle coat complex A 98.5 0.00092 2E-08 63.4 29.0 296 69-391 115-433 (938)
93 TIGR02270 conserved hypothetic 98.4 0.00011 2.4E-09 67.8 22.6 244 65-392 54-297 (410)
94 PF14664 RICTOR_N: Rapamycin-i 98.4 5.2E-05 1.1E-09 69.0 20.1 338 45-393 6-366 (371)
95 KOG4413 26S proteasome regulat 98.4 7.4E-05 1.6E-09 64.0 19.4 216 171-392 63-287 (524)
96 COG1413 FOG: HEAT repeat [Ener 98.4 0.00027 5.9E-09 64.6 24.5 251 22-349 43-305 (335)
97 KOG4646 Uncharacterized conser 98.4 1.4E-05 3E-10 59.0 12.1 125 20-148 14-139 (173)
98 COG5231 VMA13 Vacuolar H+-ATPa 98.4 8.1E-05 1.8E-09 63.5 18.3 239 196-448 153-430 (432)
99 KOG0915 Uncharacterized conser 98.4 8.9E-05 1.9E-09 75.8 21.6 376 25-433 821-1232(1702)
100 KOG1240 Protein kinase contain 98.4 2.5E-05 5.3E-10 77.8 17.4 270 24-306 424-725 (1431)
101 PF12460 MMS19_C: RNAPII trans 98.4 0.00079 1.7E-08 63.2 26.7 350 24-394 1-397 (415)
102 COG5231 VMA13 Vacuolar H+-ATPa 98.3 6.9E-05 1.5E-09 63.9 16.8 230 73-306 157-428 (432)
103 COG5240 SEC21 Vesicle coat com 98.3 7.5E-05 1.6E-09 68.8 17.9 290 22-348 264-555 (898)
104 PF00514 Arm: Armadillo/beta-c 98.3 1.5E-06 3.1E-11 51.5 4.7 41 97-137 1-41 (41)
105 KOG2259 Uncharacterized conser 98.3 5.8E-06 1.2E-10 77.0 10.4 260 25-312 201-481 (823)
106 KOG0915 Uncharacterized conser 98.3 0.00089 1.9E-08 68.8 26.2 289 65-360 998-1318(1702)
107 PF00514 Arm: Armadillo/beta-c 98.3 2.1E-06 4.6E-11 50.8 5.1 41 265-306 1-41 (41)
108 PF05536 Neurochondrin: Neuroc 98.3 0.00017 3.7E-09 69.4 20.1 238 109-349 6-262 (543)
109 PF10165 Ric8: Guanine nucleot 98.3 0.00045 9.8E-09 65.0 22.6 257 55-312 12-343 (446)
110 KOG1058 Vesicle coat complex C 98.2 0.00043 9.2E-09 66.0 21.6 243 74-355 108-353 (948)
111 PF12348 CLASP_N: CLASP N term 98.2 2.2E-05 4.9E-10 67.3 12.8 189 202-397 17-212 (228)
112 COG1413 FOG: HEAT repeat [Ener 98.2 0.00039 8.5E-09 63.6 21.1 215 65-344 43-269 (335)
113 KOG1240 Protein kinase contain 98.2 8.1E-05 1.7E-09 74.3 17.1 295 67-395 424-729 (1431)
114 KOG1991 Nuclear transport rece 98.2 0.0024 5.3E-08 63.1 26.5 342 41-395 391-761 (1010)
115 KOG2734 Uncharacterized conser 98.2 0.001 2.3E-08 59.5 21.3 224 188-425 121-369 (536)
116 KOG2734 Uncharacterized conser 98.1 0.0013 2.8E-08 59.0 21.2 228 56-286 116-371 (536)
117 KOG1077 Vesicle coat complex A 98.1 0.0028 6.1E-08 60.2 24.5 302 69-394 78-401 (938)
118 KOG0211 Protein phosphatase 2A 98.1 0.00075 1.6E-08 66.5 21.4 349 18-390 272-663 (759)
119 PF12348 CLASP_N: CLASP N term 98.1 4.3E-05 9.4E-10 65.6 11.7 189 32-228 17-213 (228)
120 PF13513 HEAT_EZ: HEAT-like re 98.1 7.4E-06 1.6E-10 52.2 4.6 55 291-346 1-55 (55)
121 KOG1248 Uncharacterized conser 98.1 0.005 1.1E-07 62.2 25.9 238 154-396 657-903 (1176)
122 COG5240 SEC21 Vesicle coat com 98.0 0.00052 1.1E-08 63.5 17.4 289 68-392 267-556 (898)
123 COG5096 Vesicle coat complex, 98.0 0.0082 1.8E-07 59.0 26.2 103 67-181 94-196 (757)
124 PF12755 Vac14_Fab1_bd: Vacuol 98.0 4.7E-05 1E-09 54.4 8.4 94 294-391 3-96 (97)
125 KOG4535 HEAT and armadillo rep 98.0 4.5E-05 9.7E-10 68.7 9.5 304 81-387 270-599 (728)
126 PF13646 HEAT_2: HEAT repeats; 98.0 3.1E-05 6.7E-10 55.1 6.8 87 67-176 1-88 (88)
127 KOG1943 Beta-tubulin folding c 98.0 0.0061 1.3E-07 60.9 24.0 232 108-349 341-612 (1133)
128 KOG1943 Beta-tubulin folding c 97.9 0.023 4.9E-07 57.1 27.2 343 22-393 341-707 (1133)
129 KOG2274 Predicted importin 9 [ 97.9 0.0038 8.3E-08 61.1 21.3 315 26-349 453-781 (1005)
130 PF12460 MMS19_C: RNAPII trans 97.9 0.017 3.7E-07 54.4 25.7 304 35-350 56-396 (415)
131 PF13646 HEAT_2: HEAT repeats; 97.9 7.6E-05 1.6E-09 53.1 7.8 87 152-259 1-88 (88)
132 KOG1991 Nuclear transport rece 97.8 0.011 2.5E-07 58.6 22.9 299 85-395 391-715 (1010)
133 KOG4535 HEAT and armadillo rep 97.8 0.00012 2.7E-09 65.9 9.1 308 36-349 269-604 (728)
134 PF13513 HEAT_EZ: HEAT-like re 97.8 2E-05 4.2E-10 50.2 3.1 55 248-304 1-55 (55)
135 PF08569 Mo25: Mo25-like; Int 97.8 0.025 5.5E-07 50.8 23.2 223 191-429 75-313 (335)
136 PF09759 Atx10homo_assoc: Spin 97.8 0.00014 3E-09 52.0 7.1 66 83-148 3-70 (102)
137 KOG1058 Vesicle coat complex C 97.8 0.014 3.1E-07 56.1 22.1 320 29-396 106-430 (948)
138 KOG2062 26S proteasome regulat 97.8 0.0021 4.6E-08 61.3 16.6 137 192-351 519-656 (929)
139 PF10165 Ric8: Guanine nucleot 97.8 0.0087 1.9E-07 56.5 21.1 239 21-263 21-337 (446)
140 KOG1078 Vesicle coat complex C 97.7 0.013 2.7E-07 56.8 21.3 248 164-448 185-441 (865)
141 KOG1248 Uncharacterized conser 97.7 0.0044 9.6E-08 62.5 19.1 237 119-360 665-910 (1176)
142 COG5096 Vesicle coat complex, 97.7 0.0014 3E-08 64.2 14.9 166 162-349 30-196 (757)
143 KOG2274 Predicted importin 9 [ 97.7 0.022 4.7E-07 56.1 22.5 242 73-322 457-705 (1005)
144 PF11841 DUF3361: Domain of un 97.6 0.0026 5.7E-08 49.5 13.0 131 228-359 5-142 (160)
145 KOG1078 Vesicle coat complex C 97.6 0.0051 1.1E-07 59.3 17.4 279 72-390 252-531 (865)
146 smart00185 ARM Armadillo/beta- 97.6 0.00017 3.6E-09 42.6 5.2 39 98-136 2-40 (41)
147 KOG0414 Chromosome condensatio 97.6 0.11 2.5E-06 52.9 27.5 143 235-393 920-1066(1251)
148 PF12717 Cnd1: non-SMC mitotic 97.6 0.0053 1.2E-07 50.1 14.6 93 205-307 1-93 (178)
149 KOG0567 HEAT repeat-containing 97.5 0.012 2.6E-07 49.4 16.2 256 68-390 6-279 (289)
150 KOG2025 Chromosome condensatio 97.5 0.027 5.9E-07 54.0 20.1 126 167-301 62-188 (892)
151 KOG4151 Myosin assembly protei 97.5 0.0086 1.9E-07 58.1 17.1 240 143-389 497-739 (748)
152 smart00185 ARM Armadillo/beta- 97.5 0.00038 8.2E-09 41.0 5.3 38 267-305 3-40 (41)
153 PF12717 Cnd1: non-SMC mitotic 97.5 0.0071 1.5E-07 49.4 14.3 92 80-182 2-94 (178)
154 PF05918 API5: Apoptosis inhib 97.5 0.026 5.6E-07 53.8 19.4 295 69-395 27-349 (556)
155 PF08569 Mo25: Mo25-like; Int 97.5 0.048 1E-06 49.0 20.3 201 228-443 70-280 (335)
156 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.0034 7.3E-08 45.0 10.3 89 336-440 3-91 (97)
157 PRK14707 hypothetical protein; 97.4 0.29 6.4E-06 53.2 28.2 394 23-439 164-564 (2710)
158 PF11841 DUF3361: Domain of un 97.4 0.0075 1.6E-07 47.0 12.3 127 269-397 4-137 (160)
159 PF09759 Atx10homo_assoc: Spin 97.4 0.0021 4.6E-08 46.0 8.6 66 293-359 2-69 (102)
160 KOG0567 HEAT repeat-containing 97.4 0.07 1.5E-06 45.0 18.9 254 110-443 5-277 (289)
161 KOG3036 Protein involved in ce 97.3 0.022 4.8E-07 47.2 15.1 142 39-182 96-249 (293)
162 PF05004 IFRD: Interferon-rela 97.3 0.12 2.6E-06 46.3 21.1 195 196-395 47-261 (309)
163 KOG1967 DNA repair/transcripti 97.3 0.0042 9.2E-08 60.9 12.4 155 190-348 865-1024(1030)
164 KOG1967 DNA repair/transcripti 97.3 0.0026 5.6E-08 62.4 10.7 191 109-305 816-1023(1030)
165 PF06025 DUF913: Domain of Unk 97.2 0.088 1.9E-06 48.5 20.0 192 85-288 3-208 (379)
166 KOG4151 Myosin assembly protei 97.2 0.0052 1.1E-07 59.5 12.3 233 20-258 502-736 (748)
167 PF04078 Rcd1: Cell differenti 97.2 0.017 3.8E-07 48.8 13.8 141 40-182 68-220 (262)
168 PF11864 DUF3384: Domain of un 97.2 0.22 4.8E-06 47.7 30.1 266 22-306 24-330 (464)
169 KOG4653 Uncharacterized conser 97.2 0.031 6.8E-07 54.8 16.9 222 161-393 737-966 (982)
170 KOG4653 Uncharacterized conser 97.2 0.018 3.9E-07 56.3 15.2 231 18-261 723-962 (982)
171 PRK14707 hypothetical protein; 97.1 0.58 1.2E-05 51.2 28.6 400 20-441 203-608 (2710)
172 PF11701 UNC45-central: Myosin 97.1 0.0049 1.1E-07 49.0 9.4 144 237-388 6-156 (157)
173 PF05918 API5: Apoptosis inhib 97.1 0.12 2.5E-06 49.5 19.1 182 19-221 20-207 (556)
174 PF05004 IFRD: Interferon-rela 97.0 0.071 1.5E-06 47.7 16.8 191 110-306 45-257 (309)
175 PF12719 Cnd3: Nuclear condens 97.0 0.038 8.3E-07 49.4 15.1 111 234-350 26-145 (298)
176 KOG0414 Chromosome condensatio 97.0 0.034 7.4E-07 56.5 15.5 147 189-351 916-1067(1251)
177 KOG1020 Sister chromatid cohes 97.0 0.69 1.5E-05 48.9 34.5 397 23-446 817-1254(1692)
178 PF11698 V-ATPase_H_C: V-ATPas 97.0 0.0044 9.5E-08 45.7 7.0 70 363-445 44-114 (119)
179 KOG2956 CLIP-associating prote 96.9 0.082 1.8E-06 48.4 15.6 147 151-306 330-477 (516)
180 KOG2032 Uncharacterized conser 96.9 0.38 8.1E-06 44.6 21.4 161 174-337 240-405 (533)
181 KOG3665 ZYG-1-like serine/thre 96.8 0.37 8E-06 48.3 21.5 176 257-446 494-697 (699)
182 KOG2032 Uncharacterized conser 96.8 0.2 4.4E-06 46.2 17.7 268 107-391 253-531 (533)
183 PF11698 V-ATPase_H_C: V-ATPas 96.8 0.0018 3.8E-08 47.7 4.0 74 276-349 43-116 (119)
184 PF12719 Cnd3: Nuclear condens 96.8 0.12 2.5E-06 46.4 16.3 172 65-247 26-210 (298)
185 KOG2956 CLIP-associating prote 96.8 0.092 2E-06 48.0 15.1 173 80-263 301-477 (516)
186 COG5116 RPN2 26S proteasome re 96.8 0.012 2.6E-07 54.8 9.7 104 234-353 551-655 (926)
187 KOG2062 26S proteasome regulat 96.8 0.11 2.3E-06 50.4 16.1 133 237-394 522-656 (929)
188 COG5656 SXM1 Importin, protein 96.7 0.64 1.4E-05 45.4 21.2 341 40-393 388-759 (970)
189 PF04078 Rcd1: Cell differenti 96.7 0.079 1.7E-06 45.0 13.6 194 247-446 8-218 (262)
190 PF01603 B56: Protein phosphat 96.7 0.041 8.9E-07 51.4 12.9 255 86-354 110-375 (409)
191 PF08045 CDC14: Cell division 96.6 0.056 1.2E-06 46.1 12.4 102 293-395 107-211 (257)
192 COG5098 Chromosome condensatio 96.6 0.011 2.5E-07 56.3 8.5 144 235-394 893-1040(1128)
193 PF13764 E3_UbLigase_R4: E3 ub 96.5 1.1 2.4E-05 45.4 24.0 210 105-329 114-360 (802)
194 PF13764 E3_UbLigase_R4: E3 ub 96.5 0.85 1.8E-05 46.2 21.2 237 192-446 117-406 (802)
195 KOG2025 Chromosome condensatio 96.5 0.21 4.5E-06 48.3 16.1 106 64-176 84-189 (892)
196 KOG3036 Protein involved in ce 96.4 0.51 1.1E-05 39.6 19.5 139 253-394 98-250 (293)
197 PF06371 Drf_GBD: Diaphanous G 96.3 0.026 5.7E-07 46.6 8.7 114 20-136 64-186 (187)
198 KOG1020 Sister chromatid cohes 96.3 1.9 4.1E-05 45.9 29.5 294 125-446 1054-1405(1692)
199 PF06025 DUF913: Domain of Unk 96.3 0.89 1.9E-05 42.0 21.1 191 127-331 3-208 (379)
200 PF02985 HEAT: HEAT repeat; I 96.3 0.006 1.3E-07 33.2 3.0 30 320-349 1-30 (31)
201 KOG1243 Protein kinase [Genera 96.3 0.35 7.6E-06 46.8 16.4 193 189-396 327-520 (690)
202 PF08045 CDC14: Cell division 96.3 0.094 2E-06 44.8 11.5 101 37-138 106-208 (257)
203 COG5218 YCG1 Chromosome conden 96.2 0.75 1.6E-05 43.7 17.5 107 187-299 86-192 (885)
204 PF02985 HEAT: HEAT repeat; I 96.2 0.0093 2E-07 32.4 3.4 30 277-307 1-30 (31)
205 KOG1820 Microtubule-associated 96.1 0.22 4.7E-06 50.2 15.0 187 111-306 256-443 (815)
206 KOG1243 Protein kinase [Genera 96.1 0.41 8.9E-06 46.4 15.8 190 105-307 327-516 (690)
207 PF11701 UNC45-central: Myosin 96.1 0.013 2.9E-07 46.5 5.4 147 152-303 5-156 (157)
208 KOG1566 Conserved protein Mo25 96.1 0.59 1.3E-05 40.7 15.3 202 145-350 74-288 (342)
209 PF01603 B56: Protein phosphat 96.1 0.38 8.3E-06 45.1 15.7 265 38-315 106-379 (409)
210 KOG1566 Conserved protein Mo25 96.1 0.89 1.9E-05 39.7 18.6 225 191-429 78-316 (342)
211 KOG1993 Nuclear transport rece 96.1 1.7 3.8E-05 42.9 23.4 328 17-355 521-871 (978)
212 PLN03076 ARF guanine nucleotid 96.0 1.6 3.5E-05 48.4 21.8 272 118-394 1147-1492(1780)
213 KOG1949 Uncharacterized conser 96.0 0.45 9.7E-06 46.1 15.4 188 236-448 176-373 (1005)
214 PF14668 RICTOR_V: Rapamycin-i 95.9 0.075 1.6E-06 35.5 7.4 67 251-319 4-70 (73)
215 PF14668 RICTOR_V: Rapamycin-i 95.9 0.092 2E-06 35.1 7.8 66 294-362 4-70 (73)
216 PF11707 Npa1: Ribosome 60S bi 95.9 1.4 2.9E-05 40.2 22.0 209 236-444 58-301 (330)
217 PF07814 WAPL: Wings apart-lik 95.8 0.87 1.9E-05 41.9 16.4 92 67-160 23-116 (361)
218 KOG2137 Protein kinase [Signal 95.7 0.33 7.2E-06 47.2 13.7 214 164-395 286-500 (700)
219 COG5116 RPN2 26S proteasome re 95.7 0.19 4.1E-06 47.3 11.5 152 156-332 521-675 (926)
220 COG5656 SXM1 Importin, protein 95.7 2.4 5.2E-05 41.7 25.2 300 85-397 389-717 (970)
221 COG5098 Chromosome condensatio 95.7 0.38 8.3E-06 46.5 13.6 182 193-397 893-1082(1128)
222 PF14500 MMS19_N: Dos2-interac 95.5 1.5 3.3E-05 38.2 19.8 226 111-353 2-242 (262)
223 KOG1820 Microtubule-associated 95.5 0.62 1.3E-05 47.1 15.2 187 161-356 263-451 (815)
224 KOG2933 Uncharacterized conser 95.5 0.089 1.9E-06 45.5 8.1 146 236-392 90-235 (334)
225 PF11865 DUF3385: Domain of un 95.4 0.23 5E-06 39.6 10.0 147 65-220 10-156 (160)
226 KOG3665 ZYG-1-like serine/thre 95.3 3.6 7.7E-05 41.5 19.9 192 131-342 494-691 (699)
227 cd03567 VHS_GGA VHS domain fam 95.3 0.47 1E-05 36.6 10.8 76 320-395 39-120 (139)
228 PF12530 DUF3730: Protein of u 95.2 1.7 3.8E-05 37.2 17.2 202 67-288 2-215 (234)
229 PF07814 WAPL: Wings apart-lik 95.2 1.5 3.3E-05 40.4 15.8 275 110-394 23-358 (361)
230 KOG1949 Uncharacterized conser 94.9 1.3 2.7E-05 43.2 14.5 230 148-389 127-368 (1005)
231 KOG2999 Regulator of Rac1, req 94.9 2.1 4.5E-05 40.5 15.4 157 237-397 86-248 (713)
232 PF12830 Nipped-B_C: Sister ch 94.8 1.1 2.4E-05 36.8 12.7 146 24-182 10-169 (187)
233 PF13251 DUF4042: Domain of un 94.8 0.81 1.8E-05 37.1 11.4 145 250-395 2-178 (182)
234 PF08506 Cse1: Cse1; InterPro 94.7 1 2.2E-05 41.5 13.3 142 192-343 210-370 (370)
235 KOG2933 Uncharacterized conser 94.7 0.36 7.7E-06 42.0 9.5 147 191-350 87-236 (334)
236 PF12530 DUF3730: Protein of u 94.7 2.5 5.4E-05 36.3 16.8 138 153-306 3-151 (234)
237 KOG2137 Protein kinase [Signal 94.7 2 4.3E-05 42.1 15.3 153 188-349 385-540 (700)
238 PF11864 DUF3384: Domain of un 94.7 4.4 9.5E-05 38.9 31.6 288 36-348 4-330 (464)
239 PF14225 MOR2-PAG1_C: Cell mor 94.6 2.8 6E-05 36.5 17.0 214 27-262 12-253 (262)
240 KOG0413 Uncharacterized conser 94.6 6 0.00013 40.4 23.0 128 251-394 948-1076(1529)
241 PF13251 DUF4042: Domain of un 94.6 0.89 1.9E-05 36.9 11.2 142 82-223 2-176 (182)
242 PF04063 DUF383: Domain of unk 94.6 0.63 1.4E-05 38.2 10.5 125 244-372 5-157 (192)
243 cd03569 VHS_Hrs_Vps27p VHS dom 94.6 0.87 1.9E-05 35.4 10.8 76 320-395 42-118 (142)
244 cd03568 VHS_STAM VHS domain fa 94.6 0.3 6.5E-06 38.0 8.2 76 320-395 38-114 (144)
245 KOG2611 Neurochondrin/leucine- 94.5 4.2 9.1E-05 37.9 16.7 187 70-262 16-224 (698)
246 PF04063 DUF383: Domain of unk 94.4 0.75 1.6E-05 37.8 10.6 122 204-329 7-157 (192)
247 PF10363 DUF2435: Protein of u 94.3 0.19 4.1E-06 35.6 6.0 72 321-395 5-76 (92)
248 PF11865 DUF3385: Domain of un 94.1 0.66 1.4E-05 37.0 9.5 147 190-347 8-156 (160)
249 KOG2999 Regulator of Rac1, req 94.0 2.5 5.4E-05 40.0 13.9 167 192-360 83-254 (713)
250 cd03572 ENTH_epsin_related ENT 94.0 1 2.3E-05 33.7 9.6 74 363-448 39-121 (122)
251 KOG1525 Sister chromatid cohes 93.7 12 0.00025 40.4 23.8 73 275-349 258-330 (1266)
252 PF14500 MMS19_N: Dos2-interac 93.6 4.6 9.9E-05 35.3 16.7 223 27-264 4-238 (262)
253 PLN03076 ARF guanine nucleotid 93.5 10 0.00022 42.6 19.7 200 164-371 1150-1402(1780)
254 PF10363 DUF2435: Protein of u 93.3 0.4 8.6E-06 34.0 6.2 77 278-357 5-81 (92)
255 PF08324 PUL: PUL domain; Int 93.3 3.6 7.7E-05 36.2 13.8 159 67-228 65-238 (268)
256 COG5218 YCG1 Chromosome conden 93.3 8.1 0.00018 37.2 17.3 109 19-138 88-197 (885)
257 cd03561 VHS VHS domain family; 93.3 1.8 3.9E-05 33.3 10.3 76 320-395 38-116 (133)
258 PF06371 Drf_GBD: Diaphanous G 93.2 1.6 3.6E-05 35.8 10.9 109 277-390 67-186 (187)
259 PF04388 Hamartin: Hamartin pr 93.1 4.6 0.0001 40.6 15.4 158 22-201 4-161 (668)
260 smart00288 VHS Domain present 93.1 2.5 5.4E-05 32.5 10.8 75 320-394 38-114 (133)
261 KOG1848 Uncharacterized conser 93.0 6.6 0.00014 41.7 16.3 245 119-393 853-1134(1610)
262 PF11707 Npa1: Ribosome 60S bi 93.0 7 0.00015 35.6 21.4 164 271-445 52-236 (330)
263 PF14726 RTTN_N: Rotatin, an a 92.9 1.2 2.6E-05 31.9 8.0 70 360-443 28-97 (98)
264 PF01347 Vitellogenin_N: Lipop 92.7 5.5 0.00012 40.1 15.8 163 110-300 433-616 (618)
265 KOG0413 Uncharacterized conser 92.7 13 0.00029 38.1 20.0 146 35-200 944-1091(1529)
266 PF08167 RIX1: rRNA processing 92.5 1.2 2.7E-05 35.7 8.8 114 22-140 25-146 (165)
267 PF00790 VHS: VHS domain; Int 92.4 1.3 2.9E-05 34.4 8.6 75 320-394 43-121 (140)
268 PF08167 RIX1: rRNA processing 92.3 1.4 3E-05 35.4 8.9 112 234-349 25-144 (165)
269 KOG2005 26S proteasome regulat 92.3 7.9 0.00017 37.8 14.7 289 23-353 416-709 (878)
270 COG5209 RCD1 Uncharacterized p 92.3 0.91 2E-05 37.5 7.6 146 34-181 111-269 (315)
271 KOG2611 Neurochondrin/leucine- 92.0 11 0.00023 35.4 17.9 191 112-306 15-225 (698)
272 cd03572 ENTH_epsin_related ENT 92.0 3.8 8.3E-05 30.7 10.1 89 299-392 23-120 (122)
273 smart00638 LPD_N Lipoprotein N 91.8 8.9 0.00019 38.1 15.8 135 192-346 393-543 (574)
274 cd03569 VHS_Hrs_Vps27p VHS dom 91.3 0.88 1.9E-05 35.4 6.5 75 21-95 40-114 (142)
275 PF08506 Cse1: Cse1; InterPro 91.3 12 0.00026 34.6 17.2 147 230-386 206-370 (370)
276 COG5209 RCD1 Uncharacterized p 91.3 0.97 2.1E-05 37.3 6.8 138 253-393 119-270 (315)
277 cd03568 VHS_STAM VHS domain fa 91.2 1.6 3.5E-05 34.0 7.9 70 363-444 38-108 (144)
278 PF01347 Vitellogenin_N: Lipop 90.8 4.1 8.9E-05 40.9 12.4 164 192-385 431-616 (618)
279 PF13001 Ecm29: Proteasome sta 90.6 8.6 0.00019 37.3 13.9 220 203-448 248-490 (501)
280 cd03567 VHS_GGA VHS domain fam 90.5 2.3 5E-05 32.9 8.0 70 363-444 39-114 (139)
281 PF12031 DUF3518: Domain of un 90.1 1.4 3.1E-05 37.0 6.8 80 81-161 139-227 (257)
282 KOG1832 HIV-1 Vpr-binding prot 89.8 15 0.00033 37.3 14.4 317 34-360 365-783 (1516)
283 PF10521 DUF2454: Protein of u 89.7 3.8 8.2E-05 36.3 9.9 75 320-394 120-206 (282)
284 smart00288 VHS Domain present 89.7 1.5 3.3E-05 33.7 6.5 75 21-95 36-111 (133)
285 PF13001 Ecm29: Proteasome sta 89.5 8 0.00017 37.6 12.7 159 234-395 319-492 (501)
286 KOG1525 Sister chromatid cohes 89.4 36 0.00077 37.0 21.9 148 234-392 259-406 (1266)
287 cd03561 VHS VHS domain family; 89.2 2.5 5.5E-05 32.5 7.5 75 21-95 36-112 (133)
288 KOG1992 Nuclear export recepto 89.0 28 0.0006 35.2 20.8 299 67-372 363-705 (960)
289 PF12054 DUF3535: Domain of un 89.0 22 0.00047 33.9 15.3 145 290-442 289-439 (441)
290 PF03378 CAS_CSE1: CAS/CSE pro 88.9 22 0.00047 33.8 17.4 299 67-374 28-351 (435)
291 KOG1848 Uncharacterized conser 88.8 15 0.00034 39.2 14.2 115 322-444 1000-1130(1610)
292 KOG0891 DNA-dependent protein 88.7 6.1 0.00013 45.2 12.4 265 33-308 492-765 (2341)
293 PF10521 DUF2454: Protein of u 88.3 8 0.00017 34.3 10.9 139 65-204 119-277 (282)
294 PF00790 VHS: VHS domain; Int 87.9 11 0.00024 29.2 10.7 69 363-443 43-115 (140)
295 smart00638 LPD_N Lipoprotein N 87.8 31 0.00067 34.4 17.7 161 109-298 394-570 (574)
296 KOG1822 Uncharacterized conser 87.5 54 0.0012 36.8 21.1 113 110-225 878-992 (2067)
297 cd03565 VHS_Tom1 VHS domain fa 87.3 8.1 0.00017 30.0 9.1 75 320-394 39-118 (141)
298 PF10274 ParcG: Parkin co-regu 87.0 14 0.0003 30.1 10.4 72 276-349 38-110 (183)
299 PF12830 Nipped-B_C: Sister ch 86.9 16 0.00035 30.1 13.7 145 151-306 9-167 (187)
300 PF12231 Rif1_N: Rap1-interact 86.5 28 0.0006 32.4 22.2 306 32-348 3-352 (372)
301 KOG1993 Nuclear transport rece 86.4 39 0.00085 34.1 23.1 274 67-349 528-813 (978)
302 KOG2199 Signal transducing ada 86.3 13 0.00029 33.7 10.8 78 319-396 45-123 (462)
303 PF12031 DUF3518: Domain of un 86.3 2.2 4.9E-05 35.9 5.8 84 36-121 138-229 (257)
304 PF12463 DUF3689: Protein of u 86.1 13 0.00028 33.1 10.7 79 318-396 94-178 (303)
305 PF14225 MOR2-PAG1_C: Cell mor 85.7 24 0.00051 30.9 17.7 178 110-306 66-254 (262)
306 PF08324 PUL: PUL domain; Int 85.6 1.9 4E-05 38.0 5.5 135 204-339 122-265 (268)
307 KOG4464 Signaling protein RIC- 84.5 33 0.00072 31.6 12.6 158 235-394 46-231 (532)
308 PF12074 DUF3554: Domain of un 84.3 30 0.00065 31.7 12.9 217 62-287 19-255 (339)
309 KOG1410 Nuclear transport rece 83.9 48 0.001 32.9 21.6 293 21-329 4-355 (1082)
310 KOG1822 Uncharacterized conser 83.8 82 0.0018 35.5 21.9 230 67-305 878-1126(2067)
311 KOG0891 DNA-dependent protein 82.1 52 0.0011 38.3 15.4 253 125-393 461-721 (2341)
312 PF08767 CRM1_C: CRM1 C termin 82.1 16 0.00035 33.0 10.0 186 208-396 43-249 (319)
313 COG5101 CRM1 Importin beta-rel 81.6 57 0.0012 32.1 13.6 58 33-95 204-261 (1053)
314 PF14726 RTTN_N: Rotatin, an a 81.6 16 0.00034 26.2 7.7 92 37-132 2-95 (98)
315 PF09758 FPL: Uncharacterised 81.6 15 0.00032 28.7 8.1 125 96-220 14-148 (149)
316 cd00197 VHS_ENTH_ANTH VHS, ENT 81.5 19 0.00042 26.7 9.6 70 320-389 38-113 (115)
317 cd00197 VHS_ENTH_ANTH VHS, ENT 81.3 11 0.00023 28.1 7.4 70 363-444 38-113 (115)
318 PF06685 DUF1186: Protein of u 80.9 36 0.00078 29.4 14.7 129 232-366 71-201 (249)
319 PF04499 SAPS: SIT4 phosphatas 80.8 18 0.00039 34.8 10.2 117 275-395 20-152 (475)
320 KOG2085 Serine/threonine prote 80.7 47 0.001 30.7 13.7 50 97-146 166-215 (457)
321 PF04388 Hamartin: Hamartin pr 80.5 39 0.00084 34.3 12.8 81 247-328 81-161 (668)
322 KOG1788 Uncharacterized conser 79.9 18 0.0004 37.6 10.0 278 32-329 477-784 (2799)
323 PF10274 ParcG: Parkin co-regu 78.8 34 0.00074 27.9 11.2 73 234-308 38-111 (183)
324 PF12726 SEN1_N: SEN1 N termin 78.7 85 0.0018 32.4 25.6 113 321-448 443-555 (727)
325 PF04869 Uso1_p115_head: Uso1 78.4 51 0.0011 29.7 13.9 158 192-349 34-232 (312)
326 PF08767 CRM1_C: CRM1 C termin 78.2 53 0.0011 29.8 13.2 138 250-395 43-198 (319)
327 KOG0392 SNF2 family DNA-depend 78.0 24 0.00052 37.5 10.4 236 21-264 76-326 (1549)
328 cd08050 TAF6 TATA Binding Prot 77.1 20 0.00043 32.8 9.0 112 191-304 209-338 (343)
329 PF08389 Xpo1: Exportin 1-like 76.8 20 0.00043 27.8 8.1 63 192-258 82-148 (148)
330 PF09324 DUF1981: Domain of un 76.7 7.3 0.00016 27.2 4.8 71 147-217 14-84 (86)
331 KOG4464 Signaling protein RIC- 75.8 68 0.0015 29.8 12.2 154 154-307 49-232 (532)
332 KOG1832 HIV-1 Vpr-binding prot 75.6 26 0.00056 35.8 9.6 159 56-224 592-776 (1516)
333 PF12074 DUF3554: Domain of un 75.1 67 0.0015 29.4 18.2 212 125-350 4-237 (339)
334 smart00509 TFS2N Domain in the 74.7 16 0.00034 24.7 5.9 51 379-443 18-68 (75)
335 KOG2149 Uncharacterized conser 74.1 44 0.00096 30.8 10.0 116 277-395 59-174 (393)
336 PF03378 CAS_CSE1: CAS/CSE pro 74.0 43 0.00093 31.9 10.5 114 152-266 28-149 (435)
337 KOG0889 Histone acetyltransfer 73.4 1.6E+02 0.0034 35.9 15.8 175 190-371 1124-1328(3550)
338 KOG2011 Sister chromatid cohes 72.9 23 0.00049 37.1 8.9 99 328-442 296-395 (1048)
339 PF04499 SAPS: SIT4 phosphatas 72.9 54 0.0012 31.6 11.0 81 269-349 55-149 (475)
340 PF12231 Rif1_N: Rap1-interact 72.5 83 0.0018 29.3 25.1 221 164-394 59-306 (372)
341 KOG2073 SAP family cell cycle 72.0 1.3E+02 0.0028 31.3 15.1 195 191-391 189-396 (838)
342 KOG1788 Uncharacterized conser 71.9 1.4E+02 0.0031 31.7 15.4 226 117-349 476-712 (2799)
343 KOG0301 Phospholipase A2-activ 71.7 1.1E+02 0.0024 30.4 16.4 167 73-245 552-727 (745)
344 PF12726 SEN1_N: SEN1 N termin 71.0 1.3E+02 0.0029 31.0 15.0 147 21-182 440-587 (727)
345 cd08050 TAF6 TATA Binding Prot 70.5 37 0.0008 31.1 9.1 101 25-137 181-297 (343)
346 KOG1087 Cytosolic sorting prot 69.8 20 0.00044 34.1 7.3 70 363-444 39-110 (470)
347 PRK09169 hypothetical protein; 69.4 2.3E+02 0.005 33.1 27.8 116 22-141 163-281 (2316)
348 KOG2149 Uncharacterized conser 68.8 63 0.0014 29.8 9.8 115 192-308 58-172 (393)
349 PF11791 Aconitase_B_N: Aconit 68.3 12 0.00027 29.0 4.6 101 21-137 21-123 (154)
350 PF04821 TIMELESS: Timeless pr 67.6 60 0.0013 28.5 9.5 56 375-430 133-191 (266)
351 PF08711 Med26: TFIIS helical 67.3 22 0.00047 22.0 4.9 34 410-443 13-47 (53)
352 cd00183 TFIIS_I N-terminal dom 66.9 30 0.00065 23.4 5.9 34 410-443 37-70 (76)
353 PF06012 DUF908: Domain of Unk 66.8 45 0.00098 30.4 8.9 77 81-158 237-324 (329)
354 KOG1988 Uncharacterized conser 66.7 1.6E+02 0.0035 30.3 14.5 248 28-306 30-281 (970)
355 PF06685 DUF1186: Protein of u 66.7 86 0.0019 27.2 13.4 88 64-158 72-161 (249)
356 PF01417 ENTH: ENTH domain; I 66.5 24 0.00051 26.7 6.0 96 334-448 18-123 (125)
357 PF04869 Uso1_p115_head: Uso1 65.7 1E+02 0.0023 27.8 17.6 184 235-425 35-261 (312)
358 KOG2549 Transcription initiati 64.9 1.2E+02 0.0027 29.4 11.1 112 191-304 238-368 (576)
359 PF09324 DUF1981: Domain of un 64.6 22 0.00049 24.8 5.1 67 273-344 14-84 (86)
360 KOG0392 SNF2 family DNA-depend 64.1 99 0.0022 33.4 11.2 233 108-350 77-327 (1549)
361 KOG1087 Cytosolic sorting prot 62.6 49 0.0011 31.6 8.3 76 320-395 39-116 (470)
362 PF12783 Sec7_N: Guanine nucle 62.2 64 0.0014 25.9 8.2 106 36-145 36-154 (168)
363 PRK09169 hypothetical protein; 62.0 3.2E+02 0.0069 32.1 27.7 108 67-177 165-274 (2316)
364 cd03565 VHS_Tom1 VHS domain fa 62.0 74 0.0016 24.7 10.5 70 363-444 39-113 (141)
365 KOG1086 Cytosolic sorting prot 61.4 45 0.00097 30.9 7.4 113 329-448 55-204 (594)
366 PF01365 RYDR_ITPR: RIH domain 61.0 36 0.00077 28.5 6.7 118 271-394 38-172 (207)
367 KOG2676 Uncharacterized conser 60.4 12 0.00027 33.5 3.8 63 85-147 375-439 (478)
368 PF07539 DRIM: Down-regulated 60.2 41 0.00089 26.1 6.3 83 107-202 16-98 (141)
369 PF11791 Aconitase_B_N: Aconit 60.2 55 0.0012 25.6 6.7 99 195-306 25-123 (154)
370 KOG4524 Uncharacterized conser 58.4 31 0.00067 35.6 6.5 97 189-287 800-900 (1014)
371 PF08216 CTNNBL: Catenin-beta- 57.7 14 0.0003 26.9 3.1 42 84-126 64-105 (108)
372 PF08216 CTNNBL: Catenin-beta- 57.2 13 0.00029 27.0 2.9 42 337-380 64-105 (108)
373 PF09758 FPL: Uncharacterised 57.1 15 0.00032 28.7 3.4 125 265-389 15-147 (149)
374 PF12397 U3snoRNP10: U3 small 57.1 36 0.00078 25.5 5.5 68 109-182 7-76 (121)
375 KOG2011 Sister chromatid cohes 56.9 2.8E+02 0.006 29.7 14.3 131 245-387 298-431 (1048)
376 PF08713 DNA_alkylation: DNA a 55.6 1.2E+02 0.0026 25.3 11.3 144 192-361 51-196 (213)
377 KOG1791 Uncharacterized conser 55.6 3.4E+02 0.0074 30.4 14.7 200 191-392 1438-1661(1758)
378 KOG4524 Uncharacterized conser 55.5 83 0.0018 32.7 8.9 97 19-118 800-899 (1014)
379 COG5537 IRR1 Cohesin [Cell div 55.0 2.2E+02 0.0048 28.1 11.9 135 119-263 286-422 (740)
380 PF11229 DUF3028: Protein of u 54.8 2.1E+02 0.0045 27.7 15.8 232 108-349 97-354 (589)
381 PLN03205 ATR interacting prote 52.4 2E+02 0.0043 26.7 12.0 160 191-351 322-519 (652)
382 PF12783 Sec7_N: Guanine nucle 52.1 97 0.0021 24.8 7.6 83 149-232 72-157 (168)
383 KOG2199 Signal transducing ada 48.2 87 0.0019 28.8 7.0 70 363-444 46-116 (462)
384 KOG2085 Serine/threonine prote 47.4 2.4E+02 0.0053 26.3 10.2 77 58-136 170-247 (457)
385 PF11935 DUF3453: Domain of un 46.7 1.9E+02 0.0041 24.9 10.5 111 285-396 2-150 (239)
386 PF07923 N1221: N1221-like pro 45.5 1.2E+02 0.0026 27.1 7.8 79 318-396 59-170 (293)
387 smart00802 UME Domain in UVSB 45.5 1.2E+02 0.0026 22.2 8.1 80 276-360 11-95 (107)
388 PF14663 RasGEF_N_2: Rapamycin 45.3 44 0.00095 24.9 4.2 40 66-107 9-48 (115)
389 COG5110 RPN1 26S proteasome re 45.1 3.1E+02 0.0067 26.9 16.0 65 278-350 643-707 (881)
390 PF04821 TIMELESS: Timeless pr 45.0 2.2E+02 0.0047 25.1 15.0 61 21-95 12-72 (266)
391 KOG1992 Nuclear export recepto 44.5 3.8E+02 0.0083 27.8 25.4 327 33-395 16-395 (960)
392 PF08064 UME: UME (NUC010) dom 44.3 93 0.002 22.8 5.8 71 319-395 11-87 (107)
393 PF08064 UME: UME (NUC010) dom 44.1 1.3E+02 0.0027 22.1 8.1 80 276-360 11-95 (107)
394 KOG1410 Nuclear transport rece 44.0 3.6E+02 0.0077 27.3 20.5 276 152-443 7-331 (1082)
395 PF06012 DUF908: Domain of Unk 43.7 1.1E+02 0.0024 27.9 7.4 61 55-115 253-323 (329)
396 smart00567 EZ_HEAT E-Z type HE 43.1 50 0.0011 17.2 3.3 13 292-304 2-14 (30)
397 PF13925 Katanin_con80: con80 42.4 1.8E+02 0.0039 23.3 7.8 72 149-221 27-98 (164)
398 KOG2140 Uncharacterized conser 42.3 3.3E+02 0.0073 26.5 10.9 106 319-446 238-343 (739)
399 PF12765 Cohesin_HEAT: HEAT re 42.1 20 0.00043 21.0 1.6 24 319-342 18-41 (42)
400 PF03130 HEAT_PBS: PBS lyase H 40.9 46 0.00099 17.0 2.7 13 293-305 1-13 (27)
401 PF14631 FancD2: Fanconi anaem 40.7 5.9E+02 0.013 28.9 18.9 138 234-380 431-572 (1426)
402 KOG2213 Apoptosis inhibitor 5/ 40.4 3.1E+02 0.0067 25.5 17.9 252 19-286 22-289 (460)
403 PF08389 Xpo1: Exportin 1-like 40.2 34 0.00075 26.4 3.3 62 320-386 83-148 (148)
404 PF12397 U3snoRNP10: U3 small 39.5 1.6E+02 0.0035 22.0 9.9 93 320-425 7-103 (121)
405 KOG0301 Phospholipase A2-activ 39.0 4.2E+02 0.0091 26.7 16.9 165 201-373 553-727 (745)
406 PF01365 RYDR_ITPR: RIH domain 38.7 89 0.0019 26.1 5.6 94 249-348 76-169 (207)
407 PF14663 RasGEF_N_2: Rapamycin 37.8 1.7E+02 0.0037 21.8 9.5 101 320-446 9-110 (115)
408 KOG2038 CAATT-binding transcri 36.6 5E+02 0.011 26.8 17.8 92 33-136 315-408 (988)
409 KOG2229 Protein required for a 36.4 4.1E+02 0.0089 25.8 10.7 115 277-396 17-134 (616)
410 KOG2549 Transcription initiati 36.4 4.2E+02 0.0092 25.9 11.8 140 112-262 211-369 (576)
411 KOG2152 Sister chromatid cohes 36.3 4E+02 0.0087 27.2 9.9 72 110-181 334-406 (865)
412 PF10257 RAI16-like: Retinoic 35.5 3.6E+02 0.0079 24.9 12.3 130 228-360 3-169 (353)
413 smart00802 UME Domain in UVSB 35.5 1.6E+02 0.0034 21.6 5.7 71 319-395 11-87 (107)
414 KOG2038 CAATT-binding transcri 35.1 5.2E+02 0.011 26.6 22.6 74 67-146 306-379 (988)
415 PF12463 DUF3689: Protein of u 34.9 3.4E+02 0.0074 24.4 15.4 123 60-182 4-175 (303)
416 PF14631 FancD2: Fanconi anaem 34.7 1.2E+02 0.0026 33.9 7.0 138 65-210 431-572 (1426)
417 PF07923 N1221: N1221-like pro 34.2 74 0.0016 28.4 4.7 57 61-118 56-126 (293)
418 KOG0803 Predicted E3 ubiquitin 33.8 7.2E+02 0.016 27.8 14.5 111 236-348 43-153 (1312)
419 PF12243 CTK3: CTD kinase subu 33.8 2.3E+02 0.0049 22.0 7.8 100 281-392 13-120 (139)
420 PF06367 Drf_FH3: Diaphanous F 33.6 2.7E+02 0.0059 22.9 7.9 76 362-444 21-99 (197)
421 KOG0889 Histone acetyltransfer 33.3 1.1E+03 0.023 29.7 17.1 302 24-329 986-1329(3550)
422 PF08713 DNA_alkylation: DNA a 33.0 2.9E+02 0.0062 23.0 11.8 141 68-233 54-196 (213)
423 PF04510 DUF577: Family of unk 32.9 2.6E+02 0.0057 22.6 11.2 154 236-395 5-168 (174)
424 KOG2213 Apoptosis inhibitor 5/ 32.5 4.2E+02 0.0091 24.7 19.0 226 122-371 38-288 (460)
425 PF13981 SopA: SopA-like centr 31.7 2.3E+02 0.005 21.9 6.3 32 418-449 95-126 (135)
426 KOG2676 Uncharacterized conser 31.7 46 0.00099 30.1 2.8 56 127-182 375-431 (478)
427 cd03562 CID CID (CTD-Interacti 31.3 2.1E+02 0.0046 21.0 6.2 87 163-258 17-103 (114)
428 cd06561 AlkD_like A new struct 30.3 2.7E+02 0.0058 22.8 7.3 74 279-360 108-181 (197)
429 KOG1924 RhoA GTPase effector D 30.3 6.3E+02 0.014 26.1 14.4 142 292-442 207-360 (1102)
430 COG5537 IRR1 Cohesin [Cell div 30.2 5.7E+02 0.012 25.5 12.1 101 75-182 285-388 (740)
431 KOG2073 SAP family cell cycle 29.8 6.8E+02 0.015 26.4 16.0 182 143-331 183-377 (838)
432 PF04510 DUF577: Family of unk 29.4 3.1E+02 0.0066 22.2 11.1 156 278-447 5-165 (174)
433 KOG2374 Uncharacterized conser 28.6 4.9E+02 0.011 25.1 8.7 103 191-301 6-120 (661)
434 PF14750 INTS2: Integrator com 27.4 6.9E+02 0.015 27.3 10.7 77 63-139 873-979 (1049)
435 KOG1791 Uncharacterized conser 27.2 7E+02 0.015 28.2 10.5 186 229-429 1434-1640(1758)
436 KOG2005 26S proteasome regulat 25.9 7.1E+02 0.015 25.3 17.9 213 108-321 48-315 (878)
437 KOG2312 Predicted transcriptio 25.9 11 0.00025 36.7 -1.9 125 73-201 42-170 (847)
438 PF14666 RICTOR_M: Rapamycin-i 25.2 4.3E+02 0.0094 22.6 13.2 129 250-391 80-225 (226)
439 KOG1988 Uncharacterized conser 25.2 8.1E+02 0.018 25.7 13.9 246 74-349 33-282 (970)
440 cd07064 AlkD_like_1 A new stru 25.1 4.1E+02 0.0089 22.2 7.6 73 278-360 117-190 (208)
441 KOG4231 Intracellular membrane 25.0 1.3E+02 0.0027 29.0 4.5 71 235-306 329-399 (763)
442 cd03562 CID CID (CTD-Interacti 24.4 2.9E+02 0.0063 20.2 7.0 87 290-387 18-104 (114)
443 PF04064 DUF384: Domain of unk 24.2 2E+02 0.0043 18.3 5.0 40 409-448 11-51 (58)
444 KOG4231 Intracellular membrane 23.8 93 0.002 29.8 3.4 68 280-348 332-399 (763)
445 PF01465 GRIP: GRIP domain; I 23.3 1.8E+02 0.0039 17.4 3.6 31 111-141 10-40 (46)
446 PF11935 DUF3453: Domain of un 23.2 4.9E+02 0.011 22.4 8.3 70 370-444 1-70 (239)
447 PF15573 Imm27: Immunity prote 22.7 2.8E+02 0.0061 23.4 5.5 75 67-161 48-122 (259)
448 cd06561 AlkD_like A new struct 22.6 4.3E+02 0.0093 21.6 7.3 73 155-232 109-181 (197)
449 TIGR03504 FimV_Cterm FimV C-te 21.8 1.7E+02 0.0037 17.3 3.2 27 417-443 17-43 (44)
450 KOG0803 Predicted E3 ubiquitin 21.3 1.2E+03 0.026 26.2 18.7 205 188-396 37-268 (1312)
451 PF11229 DUF3028: Protein of u 21.3 7.8E+02 0.017 24.1 15.2 229 151-391 98-353 (589)
452 PF14666 RICTOR_M: Rapamycin-i 20.9 5.3E+02 0.012 22.0 13.3 131 36-180 78-225 (226)
453 KOG2312 Predicted transcriptio 20.8 7.3 0.00016 38.0 -4.2 130 238-371 39-170 (847)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-62 Score=438.35 Aligned_cols=423 Identities=65% Similarity=1.003 Sum_probs=402.3
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
....+..++.+.|+++..+..+...++++.+....+++..++..|++|.+++.|...+.+.++..|+|+|.|+++++++.
T Consensus 65 ~~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~ 144 (514)
T KOG0166|consen 65 ASNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ 144 (514)
T ss_pred hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh
Confidence 34478999999999999999999999999998888999999999999999999987766899999999999999999999
Q ss_pred hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
...+++.|++|.|+.++.+++..++++|.|+|+|++++++.+|+.+.+.|++.+|+.++..+....+.++++|+|+|||+
T Consensus 145 T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999655555899999999999999
Q ss_pred CC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940 181 GK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG 259 (449)
Q Consensus 181 ~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~ 259 (449)
+. |.+.+.....++|.|..++++.|+++...++|++++++.+..+.++.+++.|+++.|+.+|.+.++.++..|+++++
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiG 304 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIG 304 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcc
Confidence 99 88888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHH
Q 039940 260 NIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEA 339 (449)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a 339 (449)
|++.+++.+.+.+++.|+++.|..++...+...++++|||+++|++.|+.+.++.+++.|++|.|+++++..+.++|++|
T Consensus 305 NIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEA 384 (514)
T KOG0166|consen 305 NIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEA 384 (514)
T ss_pred ceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHH
Confidence 99999999999999999999999999955367799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchH
Q 039940 340 AWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGF 419 (449)
Q Consensus 340 ~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (449)
+|+++|++.+|++++..+|++.|+++.++++|.-.|.++...++.+++++++.++.....+ . +.+...++++||+
T Consensus 385 awaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~----~-n~~~~~IEe~ggl 459 (514)
T KOG0166|consen 385 AWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG----T-NPLAIMIEEAGGL 459 (514)
T ss_pred HHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc----c-cHHHHHHHHccCh
Confidence 9999999999999999999999999999999999999999999999999999999876421 1 7899999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940 420 KKIEDLKSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 420 ~~l~~l~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
++++.||+|+|.++|++|-+||++||+.|
T Consensus 460 dkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 460 DKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred hHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999975
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.7e-62 Score=402.85 Aligned_cols=425 Identities=55% Similarity=0.860 Sum_probs=399.9
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
...+|.+.+.|.|+|.+.+..|...++++++.+..++++.+++.|++|.++++++.......+..|+|+|.|+++++...
T Consensus 70 ~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 70 YSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 45679999999999999999999999999999989999999999999999999966554788999999999999999999
Q ss_pred hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc-cHHHHHHHHHHHHHhh
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA-RLSMLRIGTWTLSNLC 179 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~l~~l~ 179 (449)
...+++.|++|.++++|.+.+.++++++.|+|+|++++++.+|+.++++|++.+++.++..+. +..+.+++.|+|+|||
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999995433 4689999999999999
Q ss_pred cCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 180 KGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 180 ~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
++. |.+........+|.|.+++.+.|+++...++|++++++.+..+..+.+++.|....|+.+|.+++..++..|++.+
T Consensus 230 RGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~v 309 (526)
T COG5064 230 RGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSV 309 (526)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhh
Confidence 998 7777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHH
Q 039940 259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKE 338 (449)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~ 338 (449)
+|+..+++.+.+.+++.|+++.+..+|+++ ...+|++|||+++|++.++.+.++.+++.+++|+|+++|...+..++++
T Consensus 310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE 388 (526)
T COG5064 310 GNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE 388 (526)
T ss_pred cCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 7799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC--CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhc
Q 039940 339 AAWAISNATKAG--TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA 416 (449)
Q Consensus 339 a~~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (449)
||||++|...+| .++..++++++|++++|+++|.-.+.++.+.+++++.++++.++.+..... ...|.|...+++.
T Consensus 389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~A 466 (526)
T COG5064 389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKA 466 (526)
T ss_pred HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhc
Confidence 999999999986 578999999999999999999999999999999999999999988776543 2466788999999
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940 417 EGFKKIEDLKSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 417 ~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
||++.+..+|++.|.+++.+|-.||++||.+|
T Consensus 467 ggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee 498 (526)
T COG5064 467 GGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE 498 (526)
T ss_pred ccHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence 99999999999999999999999999999876
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-47 Score=339.21 Aligned_cols=380 Identities=25% Similarity=0.392 Sum_probs=341.9
Q ss_pred CCchhhHhhhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 039940 13 PSLNLQTKLEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLT 91 (449)
Q Consensus 13 ~~~~~~~~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~ 91 (449)
|+.......|.+|.+++.|.. +++.++++|+|+|.+++++. .+..+.+++.|.+|.++.++.+++ .+++++|+|+|+
T Consensus 100 ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALg 177 (514)
T KOG0166|consen 100 PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALG 177 (514)
T ss_pred CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHh
Confidence 667777778999999999975 56999999999999999988 788889999999999999999999 899999999999
Q ss_pred HhcCCChhhhHHHHhCCChHHHHHhhCCCCh-HHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHH
Q 039940 92 NIASGTSVNTKVLIDHGAVPIFVKLLASPSD-DVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRI 170 (449)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~ 170 (449)
|++.+++.+|+.+++.|+++.|+.++...+. ....++.|+|.|+|++.......-.-..+++.|..++ ++.|+++...
T Consensus 178 NIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~D 256 (514)
T KOG0166|consen 178 NIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTD 256 (514)
T ss_pred ccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHH
Confidence 9999999999999999999999999988665 7888999999999987632223333456788888888 8999999999
Q ss_pred HHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC-CCCC
Q 039940 171 GTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG-HPSP 248 (449)
Q Consensus 171 a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~ 248 (449)
++|++++|+.+.+.. ......|++|.++.+|.+.+..++..++++++|++.+++.+.+.+++.|+++.|..++. ++..
T Consensus 257 a~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~ 336 (514)
T KOG0166|consen 257 ACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKE 336 (514)
T ss_pred HHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcch
Confidence 999999999887443 45556899999999999999999999999999999999999999999999999999999 4566
Q ss_pred cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHH
Q 039940 249 SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNL 327 (449)
Q Consensus 249 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~l 327 (449)
.++++|||+++|++.++.++++.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++.+.++++.|++++|+++
T Consensus 337 ~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdl 415 (514)
T KOG0166|consen 337 SIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDL 415 (514)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhc
Confidence 6999999999999999999999999999999999999999 99999999999999997 789999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHHhhccCCH-------HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940 328 LQDAEFDIKKEAAWAISNATKAGTQ-------EQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 328 l~~~~~~v~~~a~~aL~~l~~~~~~-------~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 396 (449)
|...|.++...++.++.++...+.. .....+-+.|+++.+..+-.+++.++...|..++.+++..+++.
T Consensus 416 L~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~~ 491 (514)
T KOG0166|consen 416 LTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDDE 491 (514)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCccc
Confidence 9988999999999999999987532 22345557899999999999999999999999999999876443
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.3e-46 Score=307.94 Aligned_cols=380 Identities=24% Similarity=0.350 Sum_probs=335.1
Q ss_pred CCCCCchhhHhhhcHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHH
Q 039940 10 APAPSLNLQTKLEILPAMVAGVW-SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAW 88 (449)
Q Consensus 10 ~~~~~~~~~~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~ 88 (449)
...||.......|.+|.+++++. .+..-.+++|+|+|.+++++. ....+.+++.|.+|.++++|.+++ .+++++++|
T Consensus 102 E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavW 179 (526)
T COG5064 102 ETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVW 179 (526)
T ss_pred ccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHH
Confidence 34567788899999999999994 577888999999999999988 677888899999999999999999 899999999
Q ss_pred HHHHhcCCChhhhHHHHhCCChHHHHHhhCCCC--hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHH
Q 039940 89 VLTNIASGTSVNTKVLIDHGAVPIFVKLLASPS--DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLS 166 (449)
Q Consensus 89 ~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~ 166 (449)
+|+|++.+++.+|+.+.++|++..++.++.+.- ..+..++.|+|+|+|++.....+.-.-...++.|.+++ .+.|++
T Consensus 180 ALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~e 258 (526)
T COG5064 180 ALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPE 258 (526)
T ss_pred HhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHH
Confidence 999999999999999999999999999997644 47888999999999976522222222234677777777 889999
Q ss_pred HHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC
Q 039940 167 MLRIGTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH 245 (449)
Q Consensus 167 ~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 245 (449)
+...|+|++++++...... ......|+.+.|+.+|.+++..++..+++.++|+..+++.+.+.+++.|+++.+..+|.+
T Consensus 259 vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~ 338 (526)
T COG5064 259 VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS 338 (526)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcC
Confidence 9999999999999987333 333447888899999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHCCChH
Q 039940 246 PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA---GNRKQIQAVIDAGLIV 322 (449)
Q Consensus 246 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~ 322 (449)
+...++++|||+++|+..++.++++.+++.+++|+|+.+|++. +..++++|||+++|... +-|+.+.++++.|+++
T Consensus 339 ~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~Ik 417 (526)
T COG5064 339 PKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIK 417 (526)
T ss_pred hhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchh
Confidence 9999999999999999999999999999999999999999999 99999999999999997 3578899999999999
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHhhccCCHH----------HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940 323 PLVNLLQDAEFDIKKEAAWAISNATKAGTQE----------QIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 323 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~----------~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 392 (449)
+|+++|...+..+-+.++.++.|+...|..+ ...++-+.|+++.+..+.++.+.++..+|..++..+|..
T Consensus 418 pLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFge 497 (526)
T COG5064 418 PLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGE 497 (526)
T ss_pred HHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence 9999999988889999999999999876432 223344589999999999999999999999999999844
Q ss_pred h
Q 039940 393 G 393 (449)
Q Consensus 393 ~ 393 (449)
.
T Consensus 498 e 498 (526)
T COG5064 498 E 498 (526)
T ss_pred c
Confidence 3
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=333.68 Aligned_cols=409 Identities=21% Similarity=0.225 Sum_probs=344.3
Q ss_pred hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940 18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT 97 (449)
Q Consensus 18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 97 (449)
..+.|++|.++++|+++++..+..|+++|.+++... .+.+..+++.|++|.|+++|+++++..+++.|+++|++++.++
T Consensus 185 IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s 263 (2102)
T PLN03200 185 TLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS 263 (2102)
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCC
Confidence 357899999999999999999999999998887654 5678889999999999999987654799999999999999999
Q ss_pred hhhhHHHHhCCChHHHHHhhCCCC---------hHHHHHHHHHHHHHhcCCCc-----------hhh---hHhhcCCHHH
Q 039940 98 SVNTKVLIDHGAVPIFVKLLASPS---------DDVREQAVWALGNIVAHSPG-----------CRN---LVLHEEALIP 154 (449)
Q Consensus 98 ~~~~~~~~~~~~i~~L~~~l~~~~---------~~~~~~a~~~L~~l~~~~~~-----------~~~---~~~~~~~i~~ 154 (449)
++.+..+++.|+++.|++++.+++ ..++++|+|+|+|+|++.+. .++ .....|++.+
T Consensus 264 ~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALay 343 (2102)
T PLN03200 264 KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAY 343 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHH
Confidence 999999999999999999998655 34699999999999986433 111 1133466777
Q ss_pred HHHHHcccccHHHH----HHHHHHHHHhhcCC-CCCChh-------------------hhhchHHHHHHhhcCCCHHHHH
Q 039940 155 LLAQLNEHARLSML----RIGTWTLSNLCKGK-PQPPFD-------------------QVRPVLPALAQLIHLDDEEVLR 210 (449)
Q Consensus 155 l~~~l~~~~~~~~~----~~a~~~l~~l~~~~-~~~~~~-------------------~~~~~l~~l~~ll~~~~~~~~~ 210 (449)
++..+ +..+...+ ..++|+|.+++++. +..... ...++++.|+.++...+.+++.
T Consensus 344 ll~l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~ 422 (2102)
T PLN03200 344 ALMVF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQE 422 (2102)
T ss_pred HHHhc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHH
Confidence 77766 33333333 25678999999876 222111 1245677888899888999999
Q ss_pred HHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCc
Q 039940 211 NVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHK 290 (449)
Q Consensus 211 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 290 (449)
.++++|.+++.++.+..+.+.+.|+++.|+.+|.+++..++..|++++++++.++++.+..+.+.|+++.|+++|.++ +
T Consensus 423 ~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~ 501 (2102)
T PLN03200 423 ELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-S 501 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-C
Confidence 999999999999989999999999999999999999999999999999999999888899999999999999999999 9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhh
Q 039940 291 KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL 370 (449)
Q Consensus 291 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l 370 (449)
..++++|+|+|+|++.+++.....+.+.|+++.|+++|+++++++++.|+++|.+++..++.+. ++.++.+
T Consensus 502 ~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~L 572 (2102)
T PLN03200 502 QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTAL 572 (2102)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHH
Confidence 9999999999999998765555445578999999999999999999999999999998766553 3667788
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940 371 LLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 371 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
+.++++.++..++.++.+++...+.... ..+.....||++.|.+|+.++++++++.|..+|.+||...
T Consensus 573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~----------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 573 LLGDLPESKVHVLDVLGHVLSVASLEDL----------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred hcCCChhHHHHHHHHHHHHHhhcchhHH----------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999887665321 2333446799999999999999999999999999999753
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=330.78 Aligned_cols=418 Identities=17% Similarity=0.202 Sum_probs=369.9
Q ss_pred HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940 19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 98 (449)
.+.++++.|+.++...+.++|..++++|..++.++ .+.++.+.+.|++|.|+++|.+++ ..++..|++.+++++.+++
T Consensus 401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~nd 478 (2102)
T PLN03200 401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVD 478 (2102)
T ss_pred HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCH
Confidence 34577889999999999999999999999998765 778899999999999999999998 8999999999999999888
Q ss_pred hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940 99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l 178 (449)
+++..+++.|++|.|+++|.+++.++++.|+|+|+|++.++++.+..+.+.|+++++++++ ++.+.+.++.++|+|.++
T Consensus 479 enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nL 557 (2102)
T PLN03200 479 ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKL 557 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998878888887889999999999 677899999999999999
Q ss_pred hcCCCCC---------------------------------C--h---hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940 179 CKGKPQP---------------------------------P--F---DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLS 220 (449)
Q Consensus 179 ~~~~~~~---------------------------------~--~---~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 220 (449)
+...... . . ....++++.|..+++++++.+++.++|+|.+++
T Consensus 558 i~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 558 VRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF 637 (2102)
T ss_pred HhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 7533110 0 0 012478999999999999999999999999999
Q ss_pred cCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh-hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHH
Q 039940 221 DGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCVINHGAVPYLLALLINNHKKSIKKESCW 299 (449)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~ 299 (449)
.++.+..+.++..|++++++.+|.+.+.+++..++|+|++++.+.. .++..+++.|++++|+++|+++ +.+++..|+.
T Consensus 638 a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ 716 (2102)
T PLN03200 638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVC 716 (2102)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHH
Confidence 9999888889999999999999999999999999999999987543 4455678999999999999999 9999999999
Q ss_pred HHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHH--HHHHHHcCChHHHHhhccCCCHH
Q 039940 300 TVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQ--IKYLVREGCIKPLCDLLLCADPE 377 (449)
Q Consensus 300 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~~~~L~~ll~~~~~~ 377 (449)
+|.|++... +....+.+.|+++.|++++.+++++.|+.|+++|.+++.+++.++ ..++...|.+.+|+++|+..|.+
T Consensus 717 ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~ 795 (2102)
T PLN03200 717 ALANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLD 795 (2102)
T ss_pred HHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcc
Confidence 999998865 456677888999999999999999999999999999999876554 36667789999999999999888
Q ss_pred HHHH--HHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 039940 378 IVTV--CLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLK 447 (449)
Q Consensus 378 ~~~~--~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~ 447 (449)
.... ++++|..+.+...... ...++|..+++..++++.|.....+.+|.++++|+.+++++..+
T Consensus 796 ~~~~~~al~~l~~l~~~~~~~~------~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 796 SSATSEALEALALLARTKGGAN------FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred hhhHHHHHHHHHHHHhhcccCC------CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 7665 9999999998665544 34678999999999999997777999999999999999997653
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-31 Score=225.14 Aligned_cols=366 Identities=19% Similarity=0.262 Sum_probs=320.9
Q ss_pred HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940 19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 98 (449)
.+++++..++..+.++.-++|..+..++.+++.. ......+...|++..+.++-++.+ ..+|..+..+|.++.. ..
T Consensus 123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~ 198 (550)
T KOG4224|consen 123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SR 198 (550)
T ss_pred EeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hh
Confidence 4567888999999999999999999999999876 577777889999999999777777 8999999999999997 78
Q ss_pred hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcC--CHHHHHHHHcccccHHHHHHHHHHHH
Q 039940 99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEE--ALIPLLAQLNEHARLSMLRIGTWTLS 176 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~l~ 176 (449)
++|+.++..|++|.|+.++.+.+..+|+.|..+++|++-+. ..|+.+.+.+ .++.++.++ +++++.++..|..+|.
T Consensus 199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~-~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALr 276 (550)
T KOG4224|consen 199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR-RARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALR 276 (550)
T ss_pred hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH-HHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999997654 4566777777 899999999 8899999999999999
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCC-cchhhHH
Q 039940 177 NLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSP-SVLIPAL 255 (449)
Q Consensus 177 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-~v~~~a~ 255 (449)
+++.+..-.......|.+|.++++++++..........|+.|++.++-+ .-.+.+.|++.+|+.+|...+. +++..|.
T Consensus 277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAv 355 (550)
T KOG4224|consen 277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAV 355 (550)
T ss_pred hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHH
Confidence 9999864444555589999999999999888888899999999976543 3458889999999999998654 5999999
Q ss_pred HHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhH
Q 039940 256 RTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDI 335 (449)
Q Consensus 256 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v 335 (449)
.+|+|++..+......+.+.|.++.+..++.++ .-.++.+...+++.++.. +.....+.+.|+++.|+.++.+.+.++
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev 433 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEV 433 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhh
Confidence 999999998888888999999999999999999 889999999999999764 345668889999999999999999999
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHH------cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 336 KKEAAWAISNATKAGTQEQIKYLVR------EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 336 ~~~a~~aL~~l~~~~~~~~~~~l~~------~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
+-+|+.+|.|+++ +.++..++++ .|.-..|.+++.+.+-.++..+.|.+..+.+..+.
T Consensus 434 ~gNaAaAL~Nlss--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~ 497 (550)
T KOG4224|consen 434 RGNAAAALINLSS--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL 497 (550)
T ss_pred cccHHHHHHhhhh--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999998 5677777775 35566788889988888999999999999987654
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-32 Score=226.26 Aligned_cols=367 Identities=21% Similarity=0.228 Sum_probs=321.1
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
.+..+++..++++.++.++..|..++.+++-. .++.-.++.-+++..|+.-+..+. .++|..++.|+.|++. .+++
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~n 159 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSN 159 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccc
Confidence 45677888899999999999999999999865 455556667777887777666666 5999999999999999 5788
Q ss_pred hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
+..+...|++..+..+-++.+..+|.++..+|.|+.. +.+.|+.+...|+++.++.++ ++.|..++.+++.+++++.-
T Consensus 160 k~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaV 237 (550)
T KOG4224|consen 160 KVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAV 237 (550)
T ss_pred hhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhh
Confidence 9999999999999998888999999999999999964 446778888999999999999 89999999999999999998
Q ss_pred CCCCCChhhhh--chHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 181 GKPQPPFDQVR--PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 181 ~~~~~~~~~~~--~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
+...++..... ..+|.|+.++++++++++-.+..+|.+++.... +...+++.|.+|.++.+++++..........|+
T Consensus 238 d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCI 316 (550)
T KOG4224|consen 238 DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACI 316 (550)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHH
Confidence 87555554444 499999999999999999999999999997665 445589999999999999998888888899999
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHH
Q 039940 259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKE 338 (449)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~ 338 (449)
.|++-+ +-..-.+.+.|++.+|+.+|..+.+.+++-.|..+|.|++..+.+....+.+.|.+|.++.++.++...++..
T Consensus 317 rnisih-plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqse 395 (550)
T KOG4224|consen 317 RNISIH-PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSE 395 (550)
T ss_pred hhcccc-cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHH
Confidence 999876 3334457789999999999999855669999999999999988888889999999999999999999999999
Q ss_pred HHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 039940 339 AAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKK 397 (449)
Q Consensus 339 a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 397 (449)
...++..++.. .....+|.+.|.++.|+.+..+.+.+++-.+..+|.|+....++..
T Consensus 396 isac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Ya 452 (550)
T KOG4224|consen 396 ISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYA 452 (550)
T ss_pred HHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHH
Confidence 99999999884 4678899999999999999999999999999999999998776643
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.96 E-value=3.3e-26 Score=217.87 Aligned_cols=389 Identities=19% Similarity=0.213 Sum_probs=319.6
Q ss_pred hhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940 16 NLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS 95 (449)
Q Consensus 16 ~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 95 (449)
....+.++++.|++.|.+++.++...++..|.+++.. .++...+.+.|+++.|.+++.+++ .+++..++++|.|++.
T Consensus 284 ~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf 360 (708)
T PF05804_consen 284 LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF 360 (708)
T ss_pred HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc
Confidence 3455679999999999999999999999999999765 578999999999999999999998 8999999999999999
Q ss_pred CChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHH
Q 039940 96 GTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTL 175 (449)
Q Consensus 96 ~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l 175 (449)
+++.|..+++.|++|.|+.+|.++ ..+..++.+|++++.+. ..+..+...++++.+++++...+++.+...+++.+
T Consensus 361 -d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~ 436 (708)
T PF05804_consen 361 -DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALL 436 (708)
T ss_pred -CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHH
Confidence 788999999999999999999854 46677999999998765 57888888899999999987777888888899999
Q ss_pred HHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhH
Q 039940 176 SNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPA 254 (449)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a 254 (449)
.|++.+..+.......++++.|+.........+ .+..+.|++.+++.... .+. +++..|+.++..+ +++...++
T Consensus 437 iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~-~f~-~~i~~L~~~v~~~~~ee~~vE~ 511 (708)
T PF05804_consen 437 INLALNKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKE-LFV-DFIGDLAKIVSSGDSEEFVVEC 511 (708)
T ss_pred HHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHH-HHH-HHHHHHHHHhhcCCcHHHHHHH
Confidence 999999866666666778888887655433222 34688899988754333 332 5677777777664 66789999
Q ss_pred HHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--
Q 039940 255 LRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-- 331 (449)
Q Consensus 255 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-- 331 (449)
+++|+|+...+....+.+.+.+++|.+..+|..+. ++++.-+++..++.++. ++.....+.+.|+++.|++++...
T Consensus 512 LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqe 590 (708)
T PF05804_consen 512 LGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQE 590 (708)
T ss_pred HHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCc
Confidence 99999998876666666667899999999997652 45789999999998875 567777888999999999999775
Q ss_pred chhHHHHHHHHHHHhhccCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHH
Q 039940 332 EFDIKKEAAWAISNATKAGTQEQIKYLVR-EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYA 410 (449)
Q Consensus 332 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 410 (449)
|.++..+.++++..+..+ ++.+..++. .+++..|+++++++|++++..|-.+|.-+.+..+.+... .....
T Consensus 591 DdE~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~r------i~~~k 662 (708)
T PF05804_consen 591 DDEIVLQILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAER------IRREK 662 (708)
T ss_pred hHHHHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHH------hhHHH
Confidence 789999999999999997 356677765 789999999999999999999999999999999888743 22223
Q ss_pred HHHHhcchHHHHHHH
Q 039940 411 RLVEGAEGFKKIEDL 425 (449)
Q Consensus 411 ~~~~~~~~~~~l~~l 425 (449)
-......+++.++.=
T Consensus 663 F~~hN~~WLe~v~~~ 677 (708)
T PF05804_consen 663 FRWHNAQWLEMVESQ 677 (708)
T ss_pred HHHHHHHHHHHHhcc
Confidence 344455678877653
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.96 E-value=2.9e-25 Score=211.44 Aligned_cols=388 Identities=20% Similarity=0.177 Sum_probs=317.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHH
Q 039940 25 PAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVL 104 (449)
Q Consensus 25 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 104 (449)
.++-.++++. ..+.+.+...|.+++.. ......+.+.|+++.|+++|++++ .++...++.+|.+++. ..+++..+
T Consensus 253 kk~~~l~~kQ-eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQ-EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM 327 (708)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 3344444443 44555778889999864 466677899999999999999998 8999999999999998 68899999
Q ss_pred HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCC
Q 039940 105 IDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ 184 (449)
Q Consensus 105 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~ 184 (449)
.+.|+++.|.+++.+++..++..++++|.|++.+. ..|..+.+.|.+|.++.++. ++..+..++.+|++++..+..
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~-~~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP-ELRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH-HHHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhh
Confidence 99999999999999999999999999999997665 67888889999999999993 245667799999999998866
Q ss_pred CChhhhhchHHHHHHhhcC-CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 039940 185 PPFDQVRPVLPALAQLIHL-DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263 (449)
Q Consensus 185 ~~~~~~~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~ 263 (449)
+......+++|.++.++-+ +++.+...++..+.|++.+.. +.+.+.+.++++.|+........ ...+.++.|++.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~ 479 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ 479 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence 6666668899999987654 567777788899999997765 45778888889998887655332 235578999999
Q ss_pred CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHH
Q 039940 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAW 341 (449)
Q Consensus 264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~ 341 (449)
+.+.....+. +.+..|+.++..+.+.+...++.++|+|+...+......+.+.+++|.+.+.|..+ ++++..++..
T Consensus 480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 8755444443 47888888888776888999999999999876555444555689999999999876 5689999999
Q ss_pred HHHHhhccCCHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchH
Q 039940 342 AISNATKAGTQEQIKYLVREGCIKPLCDLLLC--ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGF 419 (449)
Q Consensus 342 aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (449)
.++.++. +++....+.+.|+++.|+.++.. +|.++....+.++++++...+.. ...+.+.++.
T Consensus 558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr-------------~~ll~~~~~~ 622 (708)
T PF05804_consen 558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR-------------EVLLKETEIP 622 (708)
T ss_pred HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-------------HHHHhccchH
Confidence 9999987 67888889999999999999975 47889999999999999886653 4566778899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Q 039940 420 KKIEDLKSHGNNGIREKAVTILE 442 (449)
Q Consensus 420 ~~l~~l~~~~~~~i~~~a~~~i~ 442 (449)
..+-.++++.|++|++.|...+.
T Consensus 623 ~ylidL~~d~N~~ir~~~d~~Ld 645 (708)
T PF05804_consen 623 AYLIDLMHDKNAEIRKVCDNALD 645 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999888776654
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8.7e-20 Score=169.60 Aligned_cols=391 Identities=20% Similarity=0.282 Sum_probs=315.1
Q ss_pred cHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940 23 ILPAMVAGVWSD-DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 23 ~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
-+.+|++.|+.+ |+..|++|+..|+.++....++....+--.-++|.|+.+|++....+++..|+++|.+++..-|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 467888888876 9999999999999988766566666555667899999999998779999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 102 KVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
..+++.++||.|+.-|.. +..++.++++.+|-.+++..+. .+++.|++...+.++ +-....+++.|+.+..|.|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999997765 6789999999999999988754 577899999999999 77788999999999999999
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHccc---CChhHHHHHHHhCcHHHHHHhhCCCCC----cchhh
Q 039940 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSD---GTNDKIQAVIEAGVCGPLVELLGHPSP----SVLIP 253 (449)
Q Consensus 181 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~L~~ll~~~~~----~v~~~ 253 (449)
..+...+..+...+|.|..+|...|.+..+.++-|+..++. +.++..+.+...|++.....++..... .+...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 99888888889999999999999999999999999999874 456777888899999999999876532 34455
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCc-------------h-hHHHHHH---------------------
Q 039940 254 ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHK-------------K-SIKKESC--------------------- 298 (449)
Q Consensus 254 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-------------~-~v~~~a~--------------------- 298 (449)
.++.+.-++.+++.....+.+.++...|..+|..... + ++-....
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~ 483 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL 483 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence 6778888888888888888888888888877754200 0 0000000
Q ss_pred ------------------------------HHHH-------------HH---------hcCCHHHHHHHHHCCChHHHHH
Q 039940 299 ------------------------------WTVS-------------NI---------TAGNRKQIQAVIDAGLIVPLVN 326 (449)
Q Consensus 299 ------------------------------~~l~-------------nl---------~~~~~~~~~~l~~~~~~~~L~~ 326 (449)
+.+. +. ....|+..+.+.+ .++|.|++
T Consensus 484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve 562 (1051)
T KOG0168|consen 484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE 562 (1051)
T ss_pred hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence 0001 00 0011222333333 47889999
Q ss_pred HhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHc-CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCC
Q 039940 327 LLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVRE-GCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIG 404 (449)
Q Consensus 327 ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 404 (449)
++.+. ++.||..++.||..++...+.+.+..++.. .+-..+-.++.++|..+...|+.....|++..++
T Consensus 563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd--------- 633 (1051)
T KOG0168|consen 563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD--------- 633 (1051)
T ss_pred HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH---------
Confidence 99877 999999999999999998888888887764 5556677899999999999999999999987765
Q ss_pred cccHHHHHHHhcchHHHHHHHhcCCC
Q 039940 405 DVNQYARLVEGAEGFKKIEDLKSHGN 430 (449)
Q Consensus 405 ~~~~~~~~~~~~~~~~~l~~l~~~~~ 430 (449)
.|...|++.|++..+.+|....+
T Consensus 634 ---~F~~~F~REGV~~~v~~L~~~~~ 656 (1051)
T KOG0168|consen 634 ---TFSPSFRREGVFHAVKQLSVDSN 656 (1051)
T ss_pred ---HhhhhHhhhhHHHHHHHHhccCC
Confidence 47889999999999999977443
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.88 E-value=3.9e-20 Score=172.46 Aligned_cols=379 Identities=21% Similarity=0.232 Sum_probs=290.6
Q ss_pred cCCCCCCCchhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHH
Q 039940 7 LPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEA 86 (449)
Q Consensus 7 ~p~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a 86 (449)
+++..+.+. .+..-.+|..+.+|.+.++.+|..|+..+..++.+. ......+.+.|+|+.|+.++.+.+ .+++.+|
T Consensus 220 ~~s~~~~p~--~w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~a 295 (717)
T KOG1048|consen 220 LDSILKDPR--SWRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQA 295 (717)
T ss_pred CcccccCCc--cccccccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHH
Confidence 344444444 256677899999999999999999999998886654 666678889999999999999999 8999999
Q ss_pred HHHHHHhcCCChh--hhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc--
Q 039940 87 AWVLTNIASGTSV--NTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE-- 161 (449)
Q Consensus 87 ~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-- 161 (449)
+++|.|+..+... ++-.+.+.++++.++.+|.. .|.++++.+..+|+||++.+ ..+..+. ...+..|...+..
T Consensus 296 cgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii-~~al~tLt~~vI~P~ 373 (717)
T KOG1048|consen 296 CGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLII-TSALSTLTDNVIIPH 373 (717)
T ss_pred HHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHH-HHHHHHHHHhhcccc
Confidence 9999999986655 88889999999999999986 89999999999999998774 3444442 3445555444321
Q ss_pred -----------cccHHHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhcC------CCHHHHHHHHHHHHHcccC
Q 039940 162 -----------HARLSMLRIGTWTLSNLCKGK--PQPPFDQVRPVLPALAQLIHL------DDEEVLRNVCWTLSNLSDG 222 (449)
Q Consensus 162 -----------~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~ 222 (449)
..+.++..++..||.|++... ....+....|.+..|+..+++ .|.+..++++..+.|++..
T Consensus 374 Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYr 453 (717)
T KOG1048|consen 374 SGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYR 453 (717)
T ss_pred cccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCch
Confidence 113678899999999999865 233444558888888888762 3677888888899888743
Q ss_pred Ch-----hHH--------------------------H----------------------HHHHhCcHHHHHHhhC-CCCC
Q 039940 223 TN-----DKI--------------------------Q----------------------AVIEAGVCGPLVELLG-HPSP 248 (449)
Q Consensus 223 ~~-----~~~--------------------------~----------------------~~~~~~~~~~L~~ll~-~~~~ 248 (449)
-. ... + .+....++..-..++. ..++
T Consensus 454 l~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~ 533 (717)
T KOG1048|consen 454 LEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKND 533 (717)
T ss_pred hhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcch
Confidence 22 000 0 0111123333233333 3456
Q ss_pred cchhhHHHHHHHhhcCCh----hhHHHH-HhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH
Q 039940 249 SVLIPALRTVGNIVTGDD----FQTQCV-INHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVP 323 (449)
Q Consensus 249 ~v~~~a~~~l~~l~~~~~----~~~~~~-~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~ 323 (449)
.+.+.++.+|-|++.+.. .....+ .+..+++.+++++..+ ++.+...++.+|.|++.+ ... +.++..++++.
T Consensus 534 ~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~rn-k~ligk~a~~~ 610 (717)
T KOG1048|consen 534 NTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IRN-KELIGKYAIPD 610 (717)
T ss_pred HHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-chh-hhhhhcchHHH
Confidence 788899999999988753 233334 5789999999999999 999999999999999774 233 35556789999
Q ss_pred HHHHhhcC------chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhh
Q 039940 324 LVNLLQDA------EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 324 L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~ 395 (449)
|++.|... +.++...++.+|.+++.. +.+..+.+.+.++++.|+.+..+. +++..+.+...|..|..+.+-
T Consensus 611 lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 611 LVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred HHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999765 368999999999999976 788999999999999999998864 668888998899888877653
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.87 E-value=2.6e-19 Score=166.99 Aligned_cols=364 Identities=22% Similarity=0.245 Sum_probs=282.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc--hh
Q 039940 66 IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG--CR 143 (449)
Q Consensus 66 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~ 143 (449)
-+|..+.+|.+.+ +.++..|+.-+-.+|.++.+.+..+.+.|+|+.|+.++.+.+.+++.+|+++|.||..+... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3788899999999 89999999999999999999999999999999999999999999999999999999977655 67
Q ss_pred hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--------------CHHHH
Q 039940 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD--------------DEEVL 209 (449)
Q Consensus 144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--------------~~~~~ 209 (449)
-.+.+.++++.++..+.+..|.++++.+..+|+||++.+ ..+.......+..|..-+-.+ +.++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 778899999999999988899999999999999999995 444555566666666544311 35788
Q ss_pred HHHHHHHHHcccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcCChh---------------
Q 039940 210 RNVCWTLSNLSDGTNDKIQAVIEA-GVCGPLVELLGH------PSPSVLIPALRTVGNIVTGDDF--------------- 267 (449)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~~--------------- 267 (449)
.++..||.|++....+..+.+.+. |+++.|+..+++ .+....++++-++.|++..-..
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 999999999998766655555544 889999988763 3445566677777777643210
Q ss_pred ----------------hHHH----------------------HHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC-
Q 039940 268 ----------------QTQC----------------------VINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN- 308 (449)
Q Consensus 268 ----------------~~~~----------------------~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~- 308 (449)
..+. +....++..-..++....+..+.+.++.+|-|++.+.
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0000 1112234444555544437889999999999999743
Q ss_pred ---HHHHHHH-HHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC------CHHH
Q 039940 309 ---RKQIQAV-IDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA------DPEI 378 (449)
Q Consensus 309 ---~~~~~~l-~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~------~~~~ 378 (449)
......+ .+..+++.+++++..++..+.+.++.+|.|++.+ .. .+.++..++++.|++.|... ++++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~r-nk~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IR-NKELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--ch-hhhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 2333334 4678999999999999999999999999999985 33 34556688999999999754 3578
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC-CCHHHHHHHHHHHHHhcCC
Q 039940 379 VTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH-GNNGIREKAVTILETYWLK 447 (449)
Q Consensus 379 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~~~a~~~i~~~~~~ 447 (449)
...++..|.+++...-.. +.-+.+.+|+++|..+..+ .++...+.|..++..+|.+
T Consensus 629 v~~vc~tl~niv~~~~~n-------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVLN-------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred HHHHHHhHHHHHHHhHHH-------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 888999999999655443 5566688999999999444 5678999999999887753
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.82 E-value=5.5e-16 Score=146.95 Aligned_cols=395 Identities=17% Similarity=0.179 Sum_probs=294.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHH
Q 039940 25 PAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVL 104 (449)
Q Consensus 25 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 104 (449)
+.++..|++.+.+....++.+|..+.... .... + ..+..+.|...|.+++ +.++..+++.+.++..++......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~-l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDS-L-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHH-H-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 34778888877777778888898887642 2222 2 5677899999999999 8999999999999999777778888
Q ss_pred HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCC
Q 039940 105 IDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ 184 (449)
Q Consensus 105 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~ 184 (449)
.+.++++.++.++.+++..+...|+.+|.+++...+.. +.+...+.+..+..++ ...+..++..+..++.+++...+.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence 88999999999999999999999999999999876554 4455777788888888 555778888999999999988743
Q ss_pred C-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcc------hhhHHHH
Q 039940 185 P-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSV------LIPALRT 257 (449)
Q Consensus 185 ~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v------~~~a~~~ 257 (449)
. ......|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+...+- ....+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 3 233347899999999999999999999999999998 5556788999999999999998743222 2234567
Q ss_pred HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHC-CC----hHHHHHHhhcC
Q 039940 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV-IDA-GL----IVPLVNLLQDA 331 (449)
Q Consensus 258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l-~~~-~~----~~~L~~ll~~~ 331 (449)
+++++...+....... ..++..+..++.+. |+..+..|.-+++.++. +.+....+ ... +. +..+.....++
T Consensus 273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~ 349 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSG 349 (503)
T ss_pred HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence 7888775443332221 34666777788888 99999999999999975 45655555 332 23 44444445556
Q ss_pred chhHHHHHHHHHHHhhccCCH---HH----HHHHHH---cCChH-HHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccC
Q 039940 332 EFDIKKEAAWAISNATKAGTQ---EQ----IKYLVR---EGCIK-PLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRG 400 (449)
Q Consensus 332 ~~~v~~~a~~aL~~l~~~~~~---~~----~~~l~~---~~~~~-~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 400 (449)
..++|..++.++.++...+.. +. .+..++ .+-.. .+.++++.+=++++..++..+..++....-.
T Consensus 350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~---- 425 (503)
T PF10508_consen 350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQ---- 425 (503)
T ss_pred chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHH----
Confidence 789999999999999765432 11 222222 33444 7888888888999999999999999876442
Q ss_pred CCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039940 401 STIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILET 443 (449)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~ 443 (449)
.......|.++-+-.-....+++.++.=-.++.+
T Consensus 426 ---------~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~ 459 (503)
T PF10508_consen 426 ---------REICSSPGFIEYLLDRSTETTKEGKEAKYDIIKA 459 (503)
T ss_pred ---------HHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHH
Confidence 4556666777777666656666665544444443
No 15
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.81 E-value=4.8e-18 Score=146.97 Aligned_cols=377 Identities=15% Similarity=0.131 Sum_probs=267.6
Q ss_pred CHHHHHHHHHHHHHHhccC--CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHH
Q 039940 35 DNSMQLEAATQFRRLLSIE--RSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPI 112 (449)
Q Consensus 35 ~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 112 (449)
+..++..+..++......+ +....+..+..+.++.|.+...+++ .++..++.++|+|+|.++.++|..+.+.|+-..
T Consensus 55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 4455555666666664321 0122333456778888888888887 799999999999999999999999999999888
Q ss_pred HHHhhCC-------CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc-ccccHHHHHHHHHHHHHhhcCCC-
Q 039940 113 FVKLLAS-------PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN-EHARLSMLRIGTWTLSNLCKGKP- 183 (449)
Q Consensus 113 L~~~l~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~~- 183 (449)
++..|+. .+.+...-+...|.|..-++.+.+..+++.|+++.+...+. +..+...-+.....+.|+.+-..
T Consensus 134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e 213 (604)
T KOG4500|consen 134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE 213 (604)
T ss_pred hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence 8888763 23567777788999999899899999999999999888774 33444444444433333322110
Q ss_pred -CCChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCc-------chhh
Q 039940 184 -QPPFDQVRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPS-------VLIP 253 (449)
Q Consensus 184 -~~~~~~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~-------v~~~ 253 (449)
-........+.-.+++++.+. ++++.+.+...+...+.++.-. -.+.+.|.++.++.+++. .... ....
T Consensus 214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 111122234444555555543 5677777888888888766533 336777999999998876 2211 2233
Q ss_pred HHHHHHHhhcCChhhHHHHHhcC-CHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc--
Q 039940 254 ALRTVGNIVTGDDFQTQCVINHG-AVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD-- 330 (449)
Q Consensus 254 a~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-- 330 (449)
++....-+..++ +..+.+...+ +++.+..++.+. |......+..+++|+++.+. ...++++.|++..|++++..
T Consensus 293 ~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 293 IAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred hhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhc
Confidence 444444445553 3444555444 899999999999 99999999999999998764 45588889999999999965
Q ss_pred ---CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCccc
Q 039940 331 ---AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVN 407 (449)
Q Consensus 331 ---~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 407 (449)
++.+++..++.||.|++.. ......+...|+.+.+...++...|.+..+-+..+.-+....+...
T Consensus 370 ~vdgnV~~qhA~lsALRnl~IP--v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a---------- 437 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLMIP--VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIA---------- 437 (604)
T ss_pred CCCccchhHHHHHHHHHhcccc--CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHH----------
Confidence 3778999999999999984 3556778899999999999999999999999999987776555432
Q ss_pred HHHHHHHhcchHHHHHHHhcCCC
Q 039940 408 QYARLVEGAEGFKKIEDLKSHGN 430 (449)
Q Consensus 408 ~~~~~~~~~~~~~~l~~l~~~~~ 430 (449)
.+..+.-..+++|..+..+++
T Consensus 438 --~eL~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 438 --CELAKNPELFEKLVDWSKSPD 458 (604)
T ss_pred --HHHhcCHHHHHHHHHhhhCCc
Confidence 344444445666666655554
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.81 E-value=1.9e-17 Score=161.80 Aligned_cols=369 Identities=18% Similarity=0.182 Sum_probs=282.6
Q ss_pred hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC--CHHHHHHHHHHHHHhcCCC
Q 039940 20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED--YPRLQFEAAWVLTNIASGT 97 (449)
Q Consensus 20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~ 97 (449)
.......+..++...|. ..-++.|..+... .+....++..|.++.|++++.-++ ..+.+..|-.+|.||....
T Consensus 195 ~vets~sllsml~t~D~---ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq 269 (2195)
T KOG2122|consen 195 SVETSNSLLSMLGTDDE---EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ 269 (2195)
T ss_pred chhhhhHHhhhcccCCH---HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC
Confidence 34455566666666555 3445566666443 677788999999999999998664 2577888999999999866
Q ss_pred hhhhHHHHhCCChHHHHH----------hhCC--------CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHH
Q 039940 98 SVNTKVLIDHGAVPIFVK----------LLAS--------PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQL 159 (449)
Q Consensus 98 ~~~~~~~~~~~~i~~L~~----------~l~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l 159 (449)
++....-.+..+++.|-+ .+.. ++..-...|+.+|..++++ .+.|..+.+.|++..+.+++
T Consensus 270 PD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl 348 (2195)
T KOG2122|consen 270 PDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELL 348 (2195)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHH
Confidence 655444333333333321 1111 1122223567777777554 57899999999999998877
Q ss_pred cc-----------cccHHHHHHHHHHHHHhhcCCCCC--ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH
Q 039940 160 NE-----------HARLSMLRIGTWTLSNLCKGKPQP--PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK 226 (449)
Q Consensus 160 ~~-----------~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 226 (449)
.- .....+++++..+|.||+.++... ......+++..++..|.+...++..-....|.||+-..+.+
T Consensus 349 ~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~n 428 (2195)
T KOG2122|consen 349 QVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSN 428 (2195)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcccccccc
Confidence 41 123568999999999999998332 33445899999999999988899999999999999766554
Q ss_pred HHH-HHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChhhHHHHH-hcCCHHHHHHHhccCC---chhHHHHHHHH
Q 039940 227 IQA-VIEAGVCGPLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCVI-NHGAVPYLLALLINNH---KKSIKKESCWT 300 (449)
Q Consensus 227 ~~~-~~~~~~~~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~---~~~v~~~a~~~ 300 (449)
.+. +.+.|-+..|... |....+.....++.+||||+.++.+++..|- -.|.+.+|+.+|.... .-.+.+.|.++
T Consensus 429 mKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGI 508 (2195)
T KOG2122|consen 429 MKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGI 508 (2195)
T ss_pred HHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccH
Confidence 444 4555777777765 4456667889999999999998877766665 4689999999997541 34677888888
Q ss_pred HHHHhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHH
Q 039940 301 VSNITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE 377 (449)
Q Consensus 301 l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~ 377 (449)
|.|... .++..++.+.+++++..|+..|++++..+..++|.+|+||... +++..+.|++.|++..|.+++++++..
T Consensus 509 LRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkM 587 (2195)
T KOG2122|consen 509 LRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKM 587 (2195)
T ss_pred HHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhh
Confidence 888875 5667788888999999999999999999999999999999998 788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 039940 378 IVTVCLKGLENILKVGEA 395 (449)
Q Consensus 378 ~~~~~~~~l~~l~~~~~~ 395 (449)
+...+..+|.|++.+.+-
T Consensus 588 Ia~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 588 IAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred hhhhHHHHHHHHhcCCch
Confidence 999999999999987743
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.81 E-value=5.6e-16 Score=146.90 Aligned_cols=367 Identities=19% Similarity=0.216 Sum_probs=278.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh
Q 039940 68 PRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL 147 (449)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 147 (449)
+.+...+++.+ .+....++.+|..+... ...... ..+..+.|...|.++++.+|..+++.++++...+......+.
T Consensus 41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~~-~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 41 PVLFDCLNTSN-REQVELICDILKRLLSA-LSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHHhhcC-hHHHHHHHHHHHHHHhc-cCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 33778888877 67778888999988873 222222 446789999999999999999999999999988877777777
Q ss_pred hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHH
Q 039940 148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKI 227 (449)
Q Consensus 148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 227 (449)
+.+.++.++.++ .+++.++...|+.+|.+++...+........+.++.|..++.+++..+|..++.++.+++..+++..
T Consensus 117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 889999999999 8899999999999999999986544444446668889999988888999999999999999999988
Q ss_pred HHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-ch---h-HHHHHHHHHH
Q 039940 228 QAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-KK---S-IKKESCWTVS 302 (449)
Q Consensus 228 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~---~-v~~~a~~~l~ 302 (449)
..+.+.|+++.++..++++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+.. |+ . .--......+
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 989999999999999999888899999999999999 5777888899999999999997652 22 1 1222346677
Q ss_pred HHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHH-HHcC-----ChHHHHhhccCCCH
Q 039940 303 NITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYL-VREG-----CIKPLCDLLLCADP 376 (449)
Q Consensus 303 nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~~-----~~~~L~~ll~~~~~ 376 (449)
+++...+..+.... ..++..+.+++.+.|+..+..|..+++.++. ..+....+ ...+ ++..+.....+...
T Consensus 275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 77764444332211 2356667777788899999999999999987 45666666 3322 35566666677788
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcch--HH-HHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 039940 377 EIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEG--FK-KIEDLKSHGNNGIREKAVTILETYWLK 447 (449)
Q Consensus 377 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~l~~l~~~~~~~i~~~a~~~i~~~~~~ 447 (449)
+++..++.++.+++...+..... .-.+.....+...+. .. .+..+...+=++++-.+-.++...+..
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~----~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDN----DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 99999999999998766542110 000111222222222 22 666777777799999999998876643
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1e-16 Score=134.55 Aligned_cols=310 Identities=13% Similarity=0.127 Sum_probs=251.3
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChH
Q 039940 33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE-DYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVP 111 (449)
Q Consensus 33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 111 (449)
+++..+...++.+|..+..+ ...+.+..++..++++|... ++.++....+.++..-|..++.+++.+++.++++
T Consensus 118 ~~~~~~l~ksL~al~~lt~~-----qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHK-----QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CCchhHHHHHHHHHHHhhcC-----CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 56677777777777777433 23466778889999988653 3378888999999999998999999999999999
Q ss_pred HHHHhhCCCC-hHHHHHHHHHHHHHhcCCC---------chhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940 112 IFVKLLASPS-DDVREQAVWALGNIVAHSP---------GCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181 (449)
Q Consensus 112 ~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 181 (449)
.+.+.+.... ..+...+.|++.-+..++. ...+.+...|++..|.+.+.-..++.+...++.+|..++-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9998886533 4566778999999876543 23455667788889999997777899999999999999988
Q ss_pred CCCCChhhhhchHHHHHHhhcCC-CHH---HHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHH
Q 039940 182 KPQPPFDQVRPVLPALAQLIHLD-DEE---VLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLIPAL 255 (449)
Q Consensus 182 ~~~~~~~~~~~~l~~l~~ll~~~-~~~---~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~ 255 (449)
+.........|++..++.++.+. +.+ ....++..|..++-++ +....+++.|+.+.++.++.. ++|.+...++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 76666667789999999999874 333 4567888888888544 456678999999999998754 6788999999
Q ss_pred HHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchh
Q 039940 256 RTVGNIVTGDDFQTQCVINHGAVPYLLALLINN-HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFD 334 (449)
Q Consensus 256 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~ 334 (449)
.+++.++-..++....+++.|+-...++.|+.. ....+++.|||.+.|++.++.++...++. .+++.|++.....++.
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~t 430 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHET 430 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999754 25679999999999999988888877776 5678888888888889
Q ss_pred HHHHHHHHHHHhhcc
Q 039940 335 IKKEAAWAISNATKA 349 (449)
Q Consensus 335 v~~~a~~aL~~l~~~ 349 (449)
....|..+|..+..+
T Consensus 431 ce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 431 CEAAAKAALRDLGCD 445 (461)
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999999988764
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=8.8e-16 Score=128.99 Aligned_cols=319 Identities=15% Similarity=0.162 Sum_probs=253.3
Q ss_pred HcCCHHHHHH---hhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhc
Q 039940 63 QAGIVPRFVE---FLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS--PSDDVREQAVWALGNIVA 137 (449)
Q Consensus 63 ~~~~i~~L~~---ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~ 137 (449)
..|..+.++- +-.+++ ..+...++.+|..+....|+ +.+..++..++++|.. ++.++-...+..+..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 4455555443 333455 67888899999998886665 5677889999999864 667888888888888888
Q ss_pred CCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCC----------hhhhhchHHHHHHhhcCC-CH
Q 039940 138 HSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP----------FDQVRPVLPALAQLIHLD-DE 206 (449)
Q Consensus 138 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~----------~~~~~~~l~~l~~ll~~~-~~ 206 (449)
.....|+.+++.++++-+...+.......+.+.++|++..+..++..+. .....+++..|+..++-. |+
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 8888999999999998888788666656899999999999988773221 112256788888888754 79
Q ss_pred HHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC-Ccch---hhHHHHHHHhhcCChhhHHHHHhcCCHHHHH
Q 039940 207 EVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS-PSVL---IPALRTVGNIVTGDDFQTQCVINHGAVPYLL 282 (449)
Q Consensus 207 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~---~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 282 (449)
++....+.+|..++-.+ +..+.+.+.|+++.+++++.+.+ ...+ ..++..|..++- +++.+..+++.|+.+.++
T Consensus 257 ~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence 99999999999998655 45677999999999999998843 3344 556777777765 577888899999999999
Q ss_pred HHhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhccCCHHHHHHHH
Q 039940 283 ALLI-NNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAGTQEQIKYLV 359 (449)
Q Consensus 283 ~ll~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~ 359 (449)
.++. +..+|.+..+++.+++-++-.+|+....+++.|+-...++.++.. ...++++||+.+.|++.+ +.++++.++
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l 413 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL 413 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence 9874 333889999999999999988888888999999999999999876 578999999999999998 567777766
Q ss_pred HcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 039940 360 REGCIKPLCDLLLCADPEIVTVCLKGLENIL 390 (449)
Q Consensus 360 ~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~ 390 (449)
.. +++.|+..-...++.+...+-.+|..+-
T Consensus 414 ~~-GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 414 AN-GIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred hc-cHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 54 6788888888888888777777776554
No 20
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1e-15 Score=134.67 Aligned_cols=391 Identities=16% Similarity=0.161 Sum_probs=299.7
Q ss_pred hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940 18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT 97 (449)
Q Consensus 18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 97 (449)
...-..+..+++.|..++.++.......|.++.-. .++...+.+.|++..|+++..... ++++..++..+.|++. +
T Consensus 300 MrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D 375 (791)
T KOG1222|consen 300 MRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-D 375 (791)
T ss_pred HHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-c
Confidence 34456788999999988888888888889888655 688889999999999999999999 8999999999999998 6
Q ss_pred hhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHH
Q 039940 98 SVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN 177 (449)
Q Consensus 98 ~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~ 177 (449)
...+..+++.|.+|.+..++.++.. ...|+..++.++.++ ..+.++....+++.+.+.+....+.++-........|
T Consensus 376 ~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciN 452 (791)
T KOG1222|consen 376 SGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCIN 452 (791)
T ss_pred ccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHH
Confidence 7789999999999999999986543 344778888887665 5677888888999999888788888888888888899
Q ss_pred hhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHH
Q 039940 178 LCKGKPQPPFDQVRPVLPALAQLI-HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPAL 255 (449)
Q Consensus 178 l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~ 255 (449)
+|.+..+.+......++..+...- +..|+- . ...+.|++++.......+++ .+..|...++.. +++...+++
T Consensus 453 l~lnkRNaQlvceGqgL~~LM~ra~k~~D~l-L---mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~ECl 526 (791)
T KOG1222|consen 453 LCLNKRNAQLVCEGQGLDLLMERAIKSRDLL-L---MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECL 526 (791)
T ss_pred HHhccccceEEecCcchHHHHHHHhcccchH-H---HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHH
Confidence 999987777777777787777654 333432 2 34556777776543333433 355566666554 455778889
Q ss_pred HHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--c
Q 039940 256 RTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--E 332 (449)
Q Consensus 256 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~ 332 (449)
++++|+....-+....+.+.+.+|++-..|..+. ..++.-...-+++.++.. ......+...|+++.|+++|+.. +
T Consensus 527 GtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeD 605 (791)
T KOG1222|consen 527 GTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQED 605 (791)
T ss_pred HHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhccc
Confidence 9999998766666666678899999999987653 344666677777777553 34445566789999999999765 7
Q ss_pred hhHHHHHHHHHHHhhccCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHH
Q 039940 333 FDIKKEAAWAISNATKAGTQEQIKYLVR-EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYAR 411 (449)
Q Consensus 333 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 411 (449)
.+...+.++++..+..+ ...++.++. ...-..+++++++.+.++++.|-.+|..+......+.+.- -.+
T Consensus 606 DEfV~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI--------~~E 675 (791)
T KOG1222|consen 606 DEFVVQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRI--------AGE 675 (791)
T ss_pred chHHHHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHH--------hhh
Confidence 88889999999999987 455666665 4556789999999999999999999999999888876531 123
Q ss_pred HH--HhcchHHHHHHHhcCCCHH
Q 039940 412 LV--EGAEGFKKIEDLKSHGNNG 432 (449)
Q Consensus 412 ~~--~~~~~~~~l~~l~~~~~~~ 432 (449)
.| +.+.+++.++.-|.+.++.
T Consensus 676 kFrwHNsQWLeMVEs~q~ddsEq 698 (791)
T KOG1222|consen 676 KFRWHNSQWLEMVESQQRDDSEQ 698 (791)
T ss_pred hcccchhHHHHHHHHhhccchhh
Confidence 33 3455777777666655544
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.76 E-value=1.8e-15 Score=131.22 Aligned_cols=401 Identities=12% Similarity=0.041 Sum_probs=294.3
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC------CCHHHHHHHHHHHHHhc
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE------DYPRLQFEAAWVLTNIA 94 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~------~~~~~~~~a~~~L~~l~ 94 (449)
.+.++.+.+...|++.++.....++|.+.+..+ .+.+..+.+.|+-..+++.|+.. ...+....+...|.|..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 456777777778899999999999999998776 88899999999988888877642 22356667788999999
Q ss_pred CCChhhhHHHHhCCChHHHHHhhC--CCChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccccHHHHHHH
Q 039940 95 SGTSVNTKVLIDHGAVPIFVKLLA--SPSDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHARLSMLRIG 171 (449)
Q Consensus 95 ~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a 171 (449)
.++.+.+....+.|+++.|...+. -.+....+..+..+.|+.+-- ....+...+......+++++.....+...+.+
T Consensus 165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~ 244 (604)
T KOG4500|consen 165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI 244 (604)
T ss_pred CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence 999999999999999999999875 356667777777777665322 22344555666677788888777788888999
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-CC-------HHHHHHHHHHHHHcccCChhHHHHHHHhC-cHHHHHHh
Q 039940 172 TWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL-DD-------EEVLRNVCWTLSNLSDGTNDKIQAVIEAG-VCGPLVEL 242 (449)
Q Consensus 172 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-~~-------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~l 242 (449)
...+...+.++.-.-.....|.+..+..+++. .+ -.....++....-+..+++. .+.+...+ +++.+.+.
T Consensus 245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHH
Confidence 99999998887555455556777778877764 21 22333444444445555544 34455555 89999999
Q ss_pred hCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC----chhHHHHHHHHHHHHhcCCHHHHHHHHHC
Q 039940 243 LGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH----KKSIKKESCWTVSNITAGNRKQIQAVIDA 318 (449)
Q Consensus 243 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~l~nl~~~~~~~~~~l~~~ 318 (449)
+.+++......+.-+++|+++. +.....+++.+++..|++++.... +.+++..++.+|.|+.-.- .+...++..
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~a 401 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPA 401 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhcccc
Confidence 9999999999999999999997 555567888999999999985421 5567788899999998632 334578899
Q ss_pred CChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHH-HcCChHHHHhhccCCCHH-HHHHHHHHHHHHHHhhhhh
Q 039940 319 GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLV-REGCIKPLCDLLLCADPE-IVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 319 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~~~~L~~ll~~~~~~-~~~~~~~~l~~l~~~~~~~ 396 (449)
|+.+.++..++...|++...-..++.-+..+. +-....+. +...++.|++.-+++|.. +.-...+.+..+++.....
T Consensus 402 GvteaIL~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k 480 (604)
T KOG4500|consen 402 GVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK 480 (604)
T ss_pred chHHHHHHHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh
Confidence 99999999999999999999999998887642 21222332 345678888888887765 6667777777777664321
Q ss_pred hccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHH
Q 039940 397 KNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKA 437 (449)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a 437 (449)
...-.+-+.||++....+.....-..+..|
T Consensus 481 -----------dv~~tvpksg~ik~~Vsm~t~~hi~mqnEa 510 (604)
T KOG4500|consen 481 -----------DVILTVPKSGGIKEKVSMFTKNHINMQNEA 510 (604)
T ss_pred -----------hhHhhccccccHHHHHHHHHHhhHHHhHHH
Confidence 235566677888887777555544444443
No 22
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.1e-14 Score=139.52 Aligned_cols=365 Identities=19% Similarity=0.215 Sum_probs=254.7
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh--
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS-- 98 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-- 98 (449)
.+.++.+++..+|+++..|..|+..|..+...-+......+ ..+.+.+.+.+.+++.+ ++..|+++++.++...+
T Consensus 117 Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~ 193 (1075)
T KOG2171|consen 117 PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENN 193 (1075)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccc
Confidence 46678888888999999999999999988654322222211 13467777888888854 99999999998887443
Q ss_pred -hhhHHHHhCCChHHHHHhh----CCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc-ccccHHHHHHHH
Q 039940 99 -VNTKVLIDHGAVPIFVKLL----ASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN-EHARLSMLRIGT 172 (449)
Q Consensus 99 -~~~~~~~~~~~i~~L~~~l----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~ 172 (449)
..+..+. ..+|.++..+ ..++......++.+|.-++...|.+-...++ .++...+.... +.-++.+|..|+
T Consensus 194 ~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~AL 270 (1075)
T KOG2171|consen 194 KSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLAL 270 (1075)
T ss_pred hHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHH
Confidence 3333333 3455555554 4566766777888888887665543222211 12222222221 233566666666
Q ss_pred HHHHHhhcCCCC----------------------------------------------------------CChhhhhchH
Q 039940 173 WTLSNLCKGKPQ----------------------------------------------------------PPFDQVRPVL 194 (449)
Q Consensus 173 ~~l~~l~~~~~~----------------------------------------------------------~~~~~~~~~l 194 (449)
.++..++...|. .........+
T Consensus 271 e~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~ 350 (1075)
T KOG2171|consen 271 EFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLF 350 (1075)
T ss_pred HHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHH
Confidence 666555444110 0001113445
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHh
Q 039940 195 PALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN 274 (449)
Q Consensus 195 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 274 (449)
+.+-.++.+.++.-|..++.+|+.++.+..+.....++ .+++.++..+.++++.||..||.+++.++..-....+....
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~ 429 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH 429 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence 56677778889999999999999999998876665444 68888999999999999999999999999887776776677
Q ss_pred cCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHCCChH-HHHHHhhcCchhHHHHHHHHHHHhhccCCH
Q 039940 275 HGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK-QIQAVIDAGLIV-PLVNLLQDAEFDIKKEAAWAISNATKAGTQ 352 (449)
Q Consensus 275 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~l~~~~~~~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 352 (449)
..+++.|+..+.+..++.++.+|+.++-|+...++. .+...+. +++. .+..++.++.+.+++.+..+|+..+.....
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 788889999999887889999999999999875443 3333333 4555 455556777999999999999999998766
Q ss_pred HHHHHHHHcCChHHHHhhccCCC----HHHHHHHHHHHHHHHHhhhh
Q 039940 353 EQIKYLVREGCIKPLCDLLLCAD----PEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 353 ~~~~~l~~~~~~~~L~~ll~~~~----~~~~~~~~~~l~~l~~~~~~ 395 (449)
.+.+|+-. .++.|...+++.+ ..++-++.++++-+-....+
T Consensus 509 ~F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGk 553 (1075)
T KOG2171|consen 509 KFIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGK 553 (1075)
T ss_pred hhHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhh
Confidence 67777655 7888888887654 23566777777777665544
No 23
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.73 E-value=8e-16 Score=150.66 Aligned_cols=327 Identities=19% Similarity=0.188 Sum_probs=250.0
Q ss_pred hhhcHHHHHHHhcC---CCHHHHHHHHHHHHHHhccCCCCc--HHHHHHcCCHHHHHHh-------hcCC------CCHH
Q 039940 20 KLEILPAMVAGVWS---DDNSMQLEAATQFRRLLSIERSLP--IDEVIQAGIVPRFVEF-------LLRE------DYPR 81 (449)
Q Consensus 20 ~~~~i~~l~~~l~s---~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~l-------l~~~------~~~~ 81 (449)
..|-+|.+++.|.- ++.+.+..|-.+|.++.....++. ++++.--.+++.+..+ ++.. ...+
T Consensus 233 ~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~ 312 (2195)
T KOG2122|consen 233 RSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDE 312 (2195)
T ss_pred hccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Confidence 46789999999984 356888889999999976432221 2222222233333222 2211 1123
Q ss_pred HHH-HHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC------------CChHHHHHHHHHHHHHhcCCCchhhhHh-
Q 039940 82 LQF-EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS------------PSDDVREQAVWALGNIVAHSPGCRNLVL- 147 (449)
Q Consensus 82 ~~~-~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~- 147 (449)
-+. .|+..|.+++. ++++|..+.+.|++.++-+++.- ....+|..+..+|.||..++...+..+.
T Consensus 313 H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred hhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 344 78888888888 79999999999999999998742 1357999999999999988877666554
Q ss_pred hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC--ChhhhhchHHHHHHh-hcCCCHHHHHHHHHHHHHcccCCh
Q 039940 148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP--PFDQVRPVLPALAQL-IHLDDEEVLRNVCWTLSNLSDGTN 224 (449)
Q Consensus 148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~l~~l-l~~~~~~~~~~~~~~l~~l~~~~~ 224 (449)
..|++..++..| .+..+++..-.+.+|.||+-..... ......|.+..|..+ ++.........++.+|+||+.+..
T Consensus 392 ~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 392 QRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 568899999999 5556678888889999999765222 222234555555544 455667788899999999998877
Q ss_pred hHHHHHHHh-CcHHHHHHhhCCCC----CcchhhHHHHHHHhhc---CChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940 225 DKIQAVIEA-GVCGPLVELLGHPS----PSVLIPALRTVGNIVT---GDDFQTQCVINHGAVPYLLALLINNHKKSIKKE 296 (449)
Q Consensus 225 ~~~~~~~~~-~~~~~L~~ll~~~~----~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 296 (449)
++...+... |.+.+|+.+|.... ..+.+.+-.+|.|.+. ....+++.+.+++.+..|+..|++. .-.+..+
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSN 549 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSN 549 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeec
Confidence 665555554 88999999998753 3577777777777653 4577888888999999999999999 8999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
+|++|+||...+++..+.+++.|.++.|.+++.+.+..+..-++.+|.|++..
T Consensus 550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999886
No 24
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.72 E-value=2.6e-14 Score=130.61 Aligned_cols=403 Identities=15% Similarity=0.075 Sum_probs=284.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHhcCCChhhhHHHHh
Q 039940 28 VAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED-YPRLQFEAAWVLTNIASGTSVNTKVLID 106 (449)
Q Consensus 28 ~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 106 (449)
+..+...+++....|..-..+++.+. .++...+++.|.++.++.++...+ ..+.+...+.++.....+.......+..
T Consensus 15 l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~ 93 (678)
T KOG1293|consen 15 LYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR 93 (678)
T ss_pred HHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence 34445667788888888999998876 566667999999999999988654 2566667777888888888888999999
Q ss_pred CCChHHHHHhhCCCC-hHHHHHHHHHHHHHhcCCCchhhhH--hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC
Q 039940 107 HGAVPIFVKLLASPS-DDVREQAVWALGNIVAHSPGCRNLV--LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP 183 (449)
Q Consensus 107 ~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 183 (449)
.+.++.++.++.+.+ ..+++.+++++.++...++...... .....++.+..+. ..+.......-+....+++....
T Consensus 94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~ 172 (678)
T KOG1293|consen 94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKD 172 (678)
T ss_pred HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccch
Confidence 999999999999988 8999999999999987664332222 1222343333333 33445556666667777777764
Q ss_pred CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHH---HcccCChhHHHHH----HHhCcHH--HHHHhhCCCCCcchhhH
Q 039940 184 QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLS---NLSDGTNDKIQAV----IEAGVCG--PLVELLGHPSPSVLIPA 254 (449)
Q Consensus 184 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~---~l~~~~~~~~~~~----~~~~~~~--~L~~ll~~~~~~v~~~a 254 (449)
........++.+.+.-++.......+..++.+++ ++..+++.....+ .+.|+.+ .+..++++++...+..+
T Consensus 173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~s 252 (678)
T KOG1293|consen 173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRS 252 (678)
T ss_pred hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHH
Confidence 4455555777788887877778899999999999 7877777544332 3335555 55666777777667777
Q ss_pred HHHHHHhhcCChhh----------------H-----------------------------------HHHHhcCCHHHHHH
Q 039940 255 LRTVGNIVTGDDFQ----------------T-----------------------------------QCVINHGAVPYLLA 283 (449)
Q Consensus 255 ~~~l~~l~~~~~~~----------------~-----------------------------------~~~~~~~~l~~L~~ 283 (449)
+.++.++...+... . ....+....+...+
T Consensus 253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~e 332 (678)
T KOG1293|consen 253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTE 332 (678)
T ss_pred HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHH
Confidence 77776665443000 0 00000111111111
Q ss_pred Hh----------------------------------------------------ccCCchhHHHHHHHHHHHHhcCCHHH
Q 039940 284 LL----------------------------------------------------INNHKKSIKKESCWTVSNITAGNRKQ 311 (449)
Q Consensus 284 ll----------------------------------------------------~~~~~~~v~~~a~~~l~nl~~~~~~~ 311 (449)
++ ... |...+..|+.++.++++.-...
T Consensus 333 llf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 333 LLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 11 112 4455666666676665533333
Q ss_pred HHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940 312 IQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK 391 (449)
Q Consensus 312 ~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~ 391 (449)
...+-...+..+|+.++.+++..++..+.++++|++..- ......|++.|+++.+..++.+.++.++..++|+|++++-
T Consensus 412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmef-s~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF-SNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc-ccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 333445678999999999999999999999999999863 4567889999999999999999999999999999999998
Q ss_pred hhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940 392 VGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL 446 (449)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~ 446 (449)
.++...+ .+.. ..=+...|..+.++++..|++.+.++++++--
T Consensus 491 ~~de~~k-----------~~~~-~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 491 NCDEEEK-----------FQLL-AKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred cchHHHH-----------HHHH-HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 7766432 2222 22246778889999999999999999998754
No 25
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=3.5e-14 Score=125.11 Aligned_cols=377 Identities=18% Similarity=0.122 Sum_probs=282.0
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHH
Q 039940 33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPI 112 (449)
Q Consensus 33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 112 (449)
.....+...|...|.+++.. ...-..++..+++..|++.|+.++ .++...+...|..++- ..+++..+.+.|++..
T Consensus 274 ~KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveK 349 (791)
T KOG1222|consen 274 RKQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEK 349 (791)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHH
Confidence 34466677788889999854 344456888899999999999999 7999999999999997 6788899999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhc
Q 039940 113 FVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRP 192 (449)
Q Consensus 113 L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 192 (449)
|++++....++++...+..+.|++.++. .+..+...|.+|.+..++..+. -...|+..++.++.++....+.....
T Consensus 350 L~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~dD~~K~MfayTd 425 (791)
T KOG1222|consen 350 LLKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCDDDAKAMFAYTD 425 (791)
T ss_pred HHHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcc---cchhhhhhhhhhccCcHHHHHHHHHH
Confidence 9999999999999999999999988774 5566668899999999994433 23457778888888876666666788
Q ss_pred hHHHHHHhhcC-CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChhhHH
Q 039940 193 VLPALAQLIHL-DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQ 270 (449)
Q Consensus 193 ~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~ 270 (449)
+++.+.+.+-. .+.++-...+....|++-+.. +.+.+.+..++..|... ++..++ ..+..+.|++.+......
T Consensus 426 ci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn 500 (791)
T KOG1222|consen 426 CIKLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQN 500 (791)
T ss_pred HHHHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHH
Confidence 89888876654 456666666665667775544 34556666667766654 333333 345677888887655555
Q ss_pred HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhc
Q 039940 271 CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATK 348 (449)
Q Consensus 271 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 348 (449)
.+++ .+..|...++...+.....++.++++|+...+-+....+.+.+.+|.+...|..+ ..+++.....+++.++.
T Consensus 501 ~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~ 578 (791)
T KOG1222|consen 501 MFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR 578 (791)
T ss_pred HHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh
Confidence 5554 5777777777664677888999999999876555555566789999999999876 55677778888888877
Q ss_pred cCCHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHh
Q 039940 349 AGTQEQIKYLVREGCIKPLCDLLLC--ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLK 426 (449)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 426 (449)
+......+...++++.++.+++. .|.+.....+..+..+++..... .-++++...--.+..|+
T Consensus 579 --d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr-------------~~miket~~~AylIDLM 643 (791)
T KOG1222|consen 579 --DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTR-------------RLMIKETALGAYLIDLM 643 (791)
T ss_pred --hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH-------------HHHHhhccchHHHHHHH
Confidence 45666777788999999999975 46677777777777777663321 33455555556678899
Q ss_pred cCCCHHHHHHHHH
Q 039940 427 SHGNNGIREKAVT 439 (449)
Q Consensus 427 ~~~~~~i~~~a~~ 439 (449)
++.|.++++-+..
T Consensus 644 HDkN~eiRkVCDn 656 (791)
T KOG1222|consen 644 HDKNAEIRKVCDN 656 (791)
T ss_pred hcccHHHHHHHHH
Confidence 9999988765543
No 26
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.71 E-value=8.9e-15 Score=133.65 Aligned_cols=375 Identities=14% Similarity=0.081 Sum_probs=252.6
Q ss_pred hhHhhhcHHHHHHHhcCCC--HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 039940 17 LQTKLEILPAMVAGVWSDD--NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIA 94 (449)
Q Consensus 17 ~~~~~~~i~~l~~~l~s~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 94 (449)
...+.|.+|.+..+++.++ ++.....+..+..++.++ +.....+.+.+.++.|++++.++++..+....++++.++.
T Consensus 46 ~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~If 124 (678)
T KOG1293|consen 46 TNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIF 124 (678)
T ss_pred hhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHH
Confidence 5778999999999999766 445544555666666666 7888889999999999999999886789999999999998
Q ss_pred CCChh--hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHH
Q 039940 95 SGTSV--NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGT 172 (449)
Q Consensus 95 ~~~~~--~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~ 172 (449)
..++. .........+++.+..++..+.......-+....++++. +..+......|+.+.+.-++ .......+..+.
T Consensus 125 et~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~-~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL 202 (678)
T KOG1293|consen 125 ETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST-KDHQLILCNAGILEKINILL-MYLSSKLRLAAL 202 (678)
T ss_pred hcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-chhhheeccccchhhHHHHH-HhhhHHHHHHHH
Confidence 84422 222222335566666666534444444445555555444 35555666666666555554 555677888888
Q ss_pred HHHH---HhhcCCCCCChhhh-----hchHH--HHHHhhcCCCHHHHHHHHHHHHHcccCChhH----------------
Q 039940 173 WTLS---NLCKGKPQPPFDQV-----RPVLP--ALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK---------------- 226 (449)
Q Consensus 173 ~~l~---~l~~~~~~~~~~~~-----~~~l~--~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~---------------- 226 (449)
.+++ ++..+++....... .++.+ .+.+++++++..-+..++.|+..+...+.+.
T Consensus 203 ~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~ 282 (678)
T KOG1293|consen 203 LCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSL 282 (678)
T ss_pred HHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHH
Confidence 8888 66666543333222 33443 3445555666655666666665555433100
Q ss_pred -----------------------------------HHHHHHhCcHHHHHHhhC---------------------------
Q 039940 227 -----------------------------------IQAVIEAGVCGPLVELLG--------------------------- 244 (449)
Q Consensus 227 -----------------------------------~~~~~~~~~~~~L~~ll~--------------------------- 244 (449)
.....+....+.+.+++.
T Consensus 283 i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~ 362 (678)
T KOG1293|consen 283 IVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLE 362 (678)
T ss_pred HHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhh
Confidence 000001111111111111
Q ss_pred -------------------------CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHH
Q 039940 245 -------------------------HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCW 299 (449)
Q Consensus 245 -------------------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~ 299 (449)
..+...+.+||.++.++++.-......+-..++.++|++++..+ +..++..+.+
T Consensus 363 ~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lg 441 (678)
T KOG1293|consen 363 YGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLG 441 (678)
T ss_pred hhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHH
Confidence 12234555666666666554333333333567899999999888 8999999999
Q ss_pred HHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHH
Q 039940 300 TVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIV 379 (449)
Q Consensus 300 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~ 379 (449)
+++|+.-.-......++..|+++.+..++.+.++.++..+.|+|.++.-.++......+...-....|..+.+++++.|+
T Consensus 442 ai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vq 521 (678)
T KOG1293|consen 442 AICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQ 521 (678)
T ss_pred HHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHH
Confidence 99999975445667889999999999999999999999999999999998665555555555556677788889999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 039940 380 TVCLKGLENILKVGEA 395 (449)
Q Consensus 380 ~~~~~~l~~l~~~~~~ 395 (449)
+.|+..+.|+.....+
T Consensus 522 eq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 522 EQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHHHHHHHhhcCcHH
Confidence 9999999999977443
No 27
>PRK09687 putative lyase; Provisional
Probab=99.70 E-value=4.9e-15 Score=128.90 Aligned_cols=256 Identities=15% Similarity=0.132 Sum_probs=202.1
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940 65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN 144 (449)
Q Consensus 65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 144 (449)
--++.|..+|.+.+ ..++..|++.|..+.. + .+++.+..++.++++.+|..++++|+.+-... ..
T Consensus 23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~--~---------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~-- 87 (280)
T PRK09687 23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGG--Q---------DVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC-- 87 (280)
T ss_pred ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc--c---------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc--
Confidence 34788999999999 8999999999998764 1 35788888899999999999999999984322 11
Q ss_pred hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh
Q 039940 145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN 224 (449)
Q Consensus 145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~ 224 (449)
....++.|..++.+++++.|+..++.+|++++...... ...++..+...+.++++.++..++++|+.+.. +
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~ 158 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E 158 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H
Confidence 12345667767568899999999999999997654322 23456667777888899999999999986641 1
Q ss_pred hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHH
Q 039940 225 DKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNI 304 (449)
Q Consensus 225 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl 304 (449)
..++.|+.++.++++.++..|+.+|+.+...++ .+++.|+..+.+. +..||..|+++|+.+
T Consensus 159 ---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 159 ---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence 357899999999999999999999999943333 3567799999988 999999999999986
Q ss_pred hcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc-CCCHHHHHHHH
Q 039940 305 TAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL-CADPEIVTVCL 383 (449)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~~~ 383 (449)
+++ .+++.|++.+.+++ ++..++.+|+++.. ++ .++.|..+++ +.|+.++..+.
T Consensus 220 --~~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 --KDK---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred --CCh---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence 233 37889999998765 67788999988864 22 6788888886 78999999999
Q ss_pred HHHHH
Q 039940 384 KGLEN 388 (449)
Q Consensus 384 ~~l~~ 388 (449)
+++..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 88763
No 28
>PRK09687 putative lyase; Provisional
Probab=99.69 E-value=1e-14 Score=126.85 Aligned_cols=258 Identities=13% Similarity=0.094 Sum_probs=201.3
Q ss_pred HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940 19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 98 (449)
.+--.++.|.+.|.+++..++..|+..|..+-. ..+++.+..++++++ +.++..|+++|+.+.....
T Consensus 20 ~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 20 CKKLNDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKR 86 (280)
T ss_pred HhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCcc
Confidence 344557889999999999999999999987732 234677888899998 8999999999999875221
Q ss_pred hhhHHHHhCCChHHHHHh-hCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHH
Q 039940 99 VNTKVLIDHGAVPIFVKL-LASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN 177 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~ 177 (449)
. ....++.|..+ ++++++.+|..++.+|++++...+.. ....+..+...+ .+.+..|+..++++|..
T Consensus 87 -~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~ 154 (280)
T PRK09687 87 -C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSV 154 (280)
T ss_pred -c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhc
Confidence 1 12356888877 67789999999999999996443221 111333455555 67789999999999976
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940 178 LCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257 (449)
Q Consensus 178 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 257 (449)
+.. ...++.|+.++.++++.++..++.+|+.+....+ ...+.|+..+.+.++.++..|++.
T Consensus 155 ~~~----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~a 215 (280)
T PRK09687 155 IND----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIG 215 (280)
T ss_pred cCC----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHH
Confidence 543 3688999999999999999999999999843333 356788999999999999999999
Q ss_pred HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh-cCchhHH
Q 039940 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ-DAEFDIK 336 (449)
Q Consensus 258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~ 336 (449)
|+.+-. ..+++.|++.+.++ + ++..++.+|+++.. +. .+|.|..++. ..|..++
T Consensus 216 Lg~~~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~ 270 (280)
T PRK09687 216 LALRKD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEII 270 (280)
T ss_pred HHccCC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHH
Confidence 988632 24789999999977 4 78889999998833 32 6788889997 6699999
Q ss_pred HHHHHHHHH
Q 039940 337 KEAAWAISN 345 (449)
Q Consensus 337 ~~a~~aL~~ 345 (449)
..|.+++..
T Consensus 271 ~~a~~a~~~ 279 (280)
T PRK09687 271 TKAIDKLKR 279 (280)
T ss_pred HHHHHHHhc
Confidence 999988764
No 29
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=6.2e-13 Score=129.47 Aligned_cols=397 Identities=15% Similarity=0.173 Sum_probs=275.3
Q ss_pred hcHHHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 22 EILPAMVAGVWSDD-NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 22 ~~i~~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
..-..++..+.++. +.++..-+..+..+++..-...| .++++.|++..++++ +..|+.|+.+|..+...-...
T Consensus 79 siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~W-----Pell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 79 SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKW-----PELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccc
Confidence 44456666666654 77888888888888766422222 355778888889999 899999999999988733222
Q ss_pred hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhh-cCCHHHHHHHHc---ccccHHHHHHHHHHHH
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLH-EEALIPLLAQLN---EHARLSMLRIGTWTLS 176 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~---~~~~~~~~~~a~~~l~ 176 (449)
-...+ ..+.+.+.+.+.+++..+|..++++++.++...+..+..... ...+|.++..+. +..|......++.++.
T Consensus 153 ~~~~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 153 LQPHL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALI 231 (1075)
T ss_pred cchhH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence 11111 134567777777777669999999999998655322222211 234666666653 3456667788888888
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHcccCChhHHHH-------------------------
Q 039940 177 NLCKGKPQPPFDQVRPVLPALAQLIHLD--DEEVLRNVCWTLSNLSDGTNDKIQA------------------------- 229 (449)
Q Consensus 177 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~------------------------- 229 (449)
.+....|..-......++........+. +..+|..++.+|..+++..+...+.
T Consensus 232 El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew 311 (1075)
T KOG2171|consen 232 ELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEW 311 (1075)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhh
Confidence 8888876655555667777777776654 5777888888777766553322110
Q ss_pred --------------------HHH------------hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCC
Q 039940 230 --------------------VIE------------AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGA 277 (449)
Q Consensus 230 --------------------~~~------------~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 277 (449)
.++ .-+++.+-.++.++++.-|..++.+|+.++.+..+.....+ ..+
T Consensus 312 ~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~I 390 (1075)
T KOG2171|consen 312 SNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKI 390 (1075)
T ss_pred ccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHH
Confidence 000 01234444556677888899999999999998877665544 358
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHH
Q 039940 278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIK 356 (449)
Q Consensus 278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~ 356 (449)
++.++..+.++ ++.||..|+.+++.++..-...++.-....+.+.|+..+.+. ++.++..|+.++-|++..+.++...
T Consensus 391 l~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~ 469 (1075)
T KOG2171|consen 391 LPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE 469 (1075)
T ss_pred HHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 88899999999 999999999999999886545555555567888999998876 7899999999999999987666554
Q ss_pred HHHHcCChH-HHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH-hcCCCHHHH
Q 039940 357 YLVREGCIK-PLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL-KSHGNNGIR 434 (449)
Q Consensus 357 ~l~~~~~~~-~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~i~ 434 (449)
...+ ++++ .+..+++++.+.+++.++.+|.......+.. -.+|...+ +..|... ++..+++.+
T Consensus 470 pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~---------F~pY~d~~-----Mp~L~~~L~n~~~~d~r 534 (1075)
T KOG2171|consen 470 PYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK---------FIPYFDRL-----MPLLKNFLQNADDKDLR 534 (1075)
T ss_pred HHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh---------hHhHHHHH-----HHHHHHHHhCCCchhhH
Confidence 4333 3555 5555667888999999999999998877653 33455555 5666666 444547777
Q ss_pred HHHHHHHH
Q 039940 435 EKAVTILE 442 (449)
Q Consensus 435 ~~a~~~i~ 442 (449)
...-+.++
T Consensus 535 ~LrgktmE 542 (1075)
T KOG2171|consen 535 ELRGKTME 542 (1075)
T ss_pred HHHhhHHH
Confidence 66666554
No 30
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.66 E-value=4.9e-14 Score=119.72 Aligned_cols=238 Identities=17% Similarity=0.163 Sum_probs=187.5
Q ss_pred hchHHHHHHhhcC-CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhH
Q 039940 191 RPVLPALAQLIHL-DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQT 269 (449)
Q Consensus 191 ~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~ 269 (449)
.+-++.++.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..++.++++.++..|++++.|++...+..
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~- 88 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ- 88 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH-
Confidence 5677889999985 58999999999999987554 45677888999999999999999999999999999998764433
Q ss_pred HHHHhcCCHHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhc
Q 039940 270 QCVINHGAVPYLLALL-INNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATK 348 (449)
Q Consensus 270 ~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 348 (449)
..+ +. .++.+.+.. .++.+..++..+..+|.|++..+.. ...+. +.++.+++++..++..+|..++++|.|++.
T Consensus 89 ~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 89 EQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-HHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-hhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 333 32 455555544 4333778999999999999764322 22332 479999999999999999999999999998
Q ss_pred cCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhhhhccCC-CCCcccHHHHHHHhcc-hHHHHHHH
Q 039940 349 AGTQEQIKYLVREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKVGEAKKNRGS-TIGDVNQYARLVEGAE-GFKKIEDL 425 (449)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~~l 425 (449)
++...+.++..+++..++.+++.. +.++...++..+.|+.+...+....-. .-.........|.+.+ .-++|..|
T Consensus 164 --np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l 241 (254)
T PF04826_consen 164 --NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQAL 241 (254)
T ss_pred --CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHH
Confidence 678899999999999999999875 678899999999999766655422110 0023344557888777 77899999
Q ss_pred hcCCCHHHHHHH
Q 039940 426 KSHGNNGIREKA 437 (449)
Q Consensus 426 ~~~~~~~i~~~a 437 (449)
..|++++|++++
T Consensus 242 ~~h~d~ev~~~v 253 (254)
T PF04826_consen 242 ANHPDPEVKEQV 253 (254)
T ss_pred HcCCCHHHhhhc
Confidence 999999999875
No 31
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.1e-14 Score=129.96 Aligned_cols=349 Identities=14% Similarity=0.131 Sum_probs=240.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhC
Q 039940 28 VAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDH 107 (449)
Q Consensus 28 ~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 107 (449)
++.+...++-++...-..+..+++..+-..+ ..++|.|+.+|.+++ ...++-|..+|.++|.++.+.-+.-...
T Consensus 96 l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~ 169 (885)
T KOG2023|consen 96 LHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLT 169 (885)
T ss_pred HhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhccc
Confidence 4444444554444444445555554433334 346899999999999 6899999999999999776554432211
Q ss_pred ----CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhc-CCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940 108 ----GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHE-EALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 108 ----~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
-.+|.++++.+++++.+|..|+.++..+.-..+.. ....- ..+..+..+- .+.+++|+.+.|.++..|..-.
T Consensus 170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr 246 (885)
T KOG2023|consen 170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVR 246 (885)
T ss_pred CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999999998886544322 22111 2344444444 8899999999999999999988
Q ss_pred CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHh--CcHHHHHHhhCCCC-------------
Q 039940 183 PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA--GVCGPLVELLGHPS------------- 247 (449)
Q Consensus 183 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~~~~L~~ll~~~~------------- 247 (449)
+.+......+++.+++...++.|.++...||.....++..+.. ...+..+ .++|.|+.-+...+
T Consensus 247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~ 325 (885)
T KOG2023|consen 247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPIC-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDE 325 (885)
T ss_pred HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHHHHccCccccccHHHhcCccccc
Confidence 8877778889999999999999999999999999998877531 1212111 45666655443211
Q ss_pred -------------------------------------------CcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH
Q 039940 248 -------------------------------------------PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL 284 (449)
Q Consensus 248 -------------------------------------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 284 (449)
+.+|+..+.+|.-++..-.+ .++. .++|.|-+.
T Consensus 326 ~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL~-~l~PlLk~~ 401 (885)
T KOG2023|consen 326 SVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELLP-ILLPLLKEH 401 (885)
T ss_pred cCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH---HHHH-HHHHHHHHH
Confidence 23444444444444322111 1111 245566666
Q ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHH-HHHHHcCC
Q 039940 285 LINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQI-KYLVREGC 363 (449)
Q Consensus 285 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~~~ 363 (449)
|.+. +..+|+.+..+++.++.|.......-+- .++|.|+++|.++.+-||...||+|+..+..--.+.. ++|.. +
T Consensus 402 L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--v 477 (885)
T KOG2023|consen 402 LSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--V 477 (885)
T ss_pred cCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--H
Confidence 6777 8899999999999999876543222111 3789999999999999999999999988765322222 33333 5
Q ss_pred hHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940 364 IKPLCDLLLCADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 364 ~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
+..|.+.+-+.+.+|+++|+.++..+-+...
T Consensus 478 L~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 478 LEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 6667777778899999999999988876554
No 32
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.5e-14 Score=132.04 Aligned_cols=353 Identities=16% Similarity=0.174 Sum_probs=229.8
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHH-HH---HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDE-VI---QAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASG 96 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~---~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 96 (449)
.+.+|.+.++|.+++......|..+|.+++..+ .+..+. .. -.-.+|.++++.++++ +.++..|+.++..+.-.
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIII 204 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeec
Confidence 578999999999999999999999999997543 111111 00 0235899999999998 99999999999887764
Q ss_pred ChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh-hcCCHHHHHHHHcccccHHHHHHHHHHH
Q 039940 97 TSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL-HEEALIPLLAQLNEHARLSMLRIGTWTL 175 (449)
Q Consensus 97 ~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~l 175 (449)
.++....-+ ..++..+..+-+++++++|.+.+.++..+....|.. .+- -.+++...+... ++.|+++.-.||...
T Consensus 205 ~~qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk--l~phl~~IveyML~~t-qd~dE~VALEACEFw 280 (885)
T KOG2023|consen 205 QTQALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK--LVPHLDNIVEYMLQRT-QDVDENVALEACEFW 280 (885)
T ss_pred CcHHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh--cccchHHHHHHHHHHc-cCcchhHHHHHHHHH
Confidence 333222111 245677777778899999999999999998665431 111 123444455444 778899999999999
Q ss_pred HHhhcCCCCCC--hhhhhchHHHHHHhhcCCC------------------------------------------------
Q 039940 176 SNLCKGKPQPP--FDQVRPVLPALAQLIHLDD------------------------------------------------ 205 (449)
Q Consensus 176 ~~l~~~~~~~~--~~~~~~~l~~l~~ll~~~~------------------------------------------------ 205 (449)
..++..+-... ......++|.|+.-+.-++
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 99998861111 1223556666655433111
Q ss_pred --------HHHHHHHHHHHHHcccCChhHHHHHHHhCc----HHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH
Q 039940 206 --------EEVLRNVCWTLSNLSDGTNDKIQAVIEAGV----CGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI 273 (449)
Q Consensus 206 --------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~----~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 273 (449)
.++|+....+|--++ .++...+ +|.|-..|.++++.+++.+..++|.++.+.-...-.-+
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLa--------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L 432 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLA--------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL 432 (885)
T ss_pred ccccccccccHhhccHHHHHHHH--------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch
Confidence 112222222222221 1222233 45555556678899999999999999876422111111
Q ss_pred hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCC
Q 039940 274 NHGAVPYLLALLINNHKKSIKKESCWTVSNITA--GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGT 351 (449)
Q Consensus 274 ~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 351 (449)
..+++.++.+|.++ .+-||+-+||+|+.++. .+.+.-+.+. .++..|++.+-+++.+|++.||.++..+-+...
T Consensus 433 -peLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 433 -PELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred -HHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 24789999999999 99999999999999875 1112212222 256667777777899999999999999988766
Q ss_pred HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940 352 QEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 352 ~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 393 (449)
.+.+.++-. .+..|...+.....+-.....+++..+....
T Consensus 509 ~eLVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv 548 (885)
T KOG2023|consen 509 EELVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSV 548 (885)
T ss_pred chhHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence 666665433 5566666665444443334444555555443
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.65 E-value=1.5e-13 Score=139.96 Aligned_cols=277 Identities=19% Similarity=0.192 Sum_probs=219.9
Q ss_pred hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
....++.|++.|.++++.+|..|+..|..+.. .+.++.|+..|++++ ++++..|+..|..+....+
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP- 684 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC-
Confidence 34567899999999999999999999987732 235788999999888 8999999999988854111
Q ss_pred hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940 100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~ 179 (449)
..+.+...|.++++.+|..++.+|..+.... ...++..+ .+.++.++..++.+|..+-
T Consensus 685 ---------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~ 742 (897)
T PRK13800 685 ---------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVD 742 (897)
T ss_pred ---------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhccc
Confidence 2367888889999999999999999874221 23466677 8899999999999998752
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940 180 KGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG 259 (449)
Q Consensus 180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~ 259 (449)
. .+.+..++.++++.++..++.+|..+..... ..++.|..+++++++.+|..|+.+|+
T Consensus 743 ~-------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg 800 (897)
T PRK13800 743 D-------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALA 800 (897)
T ss_pred C-------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1 1346678889999999999999998865432 23678889999999999999999998
Q ss_pred HhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHH
Q 039940 260 NIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEA 339 (449)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a 339 (449)
.+... + ...+.+...+.++ ++.||..|+++|+.+.. + ..++.|+.++.+++..||..|
T Consensus 801 ~~g~~-~---------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 801 ELGCP-P---------DDVAAATAALRAS-AWQVRQGAARALAGAAA--D---------VAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred hcCCc-c---------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCCCHHHHHHH
Confidence 88542 1 1235688889988 99999999999997732 1 245899999999999999999
Q ss_pred HHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 039940 340 AWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLE 387 (449)
Q Consensus 340 ~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~ 387 (449)
+++|..+. +++. ..+.|...+++.|+.|+..+..+|.
T Consensus 859 ~~aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 859 VLALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99999972 2333 3556678889999999999999886
No 34
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.62 E-value=9.8e-14 Score=117.86 Aligned_cols=196 Identities=21% Similarity=0.267 Sum_probs=162.7
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc
Q 039940 62 IQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141 (449)
Q Consensus 62 ~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 141 (449)
.+.+-++.|+.+|+...++.+++.|+.++++.+. .+.+++.+.+.|+++.+..++.++++.+++.|++++.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 4566689999999987669999999999999887 789999999999999999999999999999999999999876543
Q ss_pred hhhhHhhcCCHHHHHHHHcc-cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940 142 CRNLVLHEEALIPLLAQLNE-HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLS 220 (449)
Q Consensus 142 ~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 220 (449)
+..+. ..++.+++.... ..+.+++..++.+|.|++...... ......++.++.++.+++..++..++.+|.|++
T Consensus 88 -~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 -QEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred -HHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 34442 246666665533 347889999999999998775332 223568999999999999999999999999999
Q ss_pred cCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcC
Q 039940 221 DGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTG 264 (449)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~ 264 (449)
.++. ..+.++..+++..++.++..+ +.++...++..+.|+..+
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 7665 456688889999999999886 677899999999999644
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.58 E-value=2.4e-12 Score=131.22 Aligned_cols=276 Identities=17% Similarity=0.186 Sum_probs=217.2
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh
Q 039940 64 AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143 (449)
Q Consensus 64 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 143 (449)
...++.|+..|++++ +.++..|+..|+.+.. .+.++.|...|.++++.+|..|+.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 620 APSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred chhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence 345788999999999 9999999999998763 2468999999999999999999999998843221
Q ss_pred hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT 223 (449)
Q Consensus 144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 223 (449)
..+.+...+ ++.++.++..++.+|..+.... ...++..+.++|+.++..++.+|..+-.
T Consensus 685 -------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-- 743 (897)
T PRK13800 685 -------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD-- 743 (897)
T ss_pred -------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence 123566677 6789999999999998865322 2356778899999999999999987521
Q ss_pred hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940 224 NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN 303 (449)
Q Consensus 224 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n 303 (449)
.+.|..++.++++.+|..++.+|+.+..... ..++.|..+++++ ++.+|..|+.+|++
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~ 801 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAE 801 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence 2346678999999999999999998865321 2367888999999 99999999999998
Q ss_pred HhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 039940 304 ITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCL 383 (449)
Q Consensus 304 l~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~ 383 (449)
+... +. ..+.+...+.++++.||..|+.+|..+-.. ..++.|..+++++++.||..++
T Consensus 802 ~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 802 LGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred cCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHH
Confidence 8432 11 235677889999999999999999887431 2468899999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 039940 384 KGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILE 442 (449)
Q Consensus 384 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~ 442 (449)
.+|..+ . .+. ...+.|....++++++|+..|.+.|+
T Consensus 860 ~aL~~~-~-~~~---------------------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 860 LALTRW-P-GDP---------------------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHhcc-C-CCH---------------------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 999885 1 111 11355677888999999999998876
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.53 E-value=6.8e-12 Score=122.29 Aligned_cols=330 Identities=19% Similarity=0.208 Sum_probs=243.4
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
.+.+.+++++.+.+...+..+.-++..+.... +..-.+ +++.+.+=+.+++ +.++..|++++++++. ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence 45677888888999999998888888886542 222222 3667777788988 8999999999999984 5655
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940 102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 181 (449)
+.+ ++.+.+++.++++.+|..|+.++.++....|.. +... .++.+.+++ .+.++.++..|+.++..+ ..
T Consensus 113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence 544 688999999999999999999999998776553 2222 467788888 888899999999999999 22
Q ss_pred CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 039940 182 KPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261 (449)
Q Consensus 182 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l 261 (449)
.+..........+..+.+++...++..+..++..+..++...+..... ..+++.+..++.+.++.+..+++.++..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 211111344566777777778889999999999999999877654421 35778888888888889999999999887
Q ss_pred hcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh-cCchhHHHHHH
Q 039940 262 VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ-DAEFDIKKEAA 340 (449)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~~~a~ 340 (449)
..... .-..+++.|..++.++ ++.++..++..+..++...+... . .....+..+. +++..+|..++
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v----~--~~~~~~~~l~~~~d~~Ir~~~l 325 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAV----F--NQSLILFFLLYDDDPSIRKKAL 325 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHH----G--THHHHHHHHHCSSSHHHHHHHH
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhh----h--hhhhhhheecCCCChhHHHHHH
Confidence 76432 2234788999999988 99999999999999987653322 2 2222233444 77899999999
Q ss_pred HHHHHhhccCCHHHHHHHHHcCChHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 341 WAISNATKAGTQEQIKYLVREGCIKPLCDLL-LCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 341 ~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
..+..++. +...+. +++.|...+ ...+++++..++..+..++.....
T Consensus 326 ~lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 326 DLLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp HHHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred HHHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 99999985 345444 466677777 445788888888888888876654
No 37
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.53 E-value=4.6e-11 Score=108.29 Aligned_cols=322 Identities=15% Similarity=0.176 Sum_probs=232.7
Q ss_pred CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhc-----CCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940 108 GAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHE-----EALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181 (449)
Q Consensus 108 ~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 181 (449)
..+..++.+++. .++++.+..+..+.-+....|.....+.+. ....+++.++ ...|.-+...++.++..+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence 456677777764 568888889999999988887666655543 4567788877 567888999999999999877
Q ss_pred CCCCCh-hhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHH
Q 039940 182 KPQPPF-DQVRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP--SPSVLIPALRT 257 (449)
Q Consensus 182 ~~~~~~-~~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~ 257 (449)
.+.... ......++.+...+.++ +...+..++.++..+...++-+ ..+.+.++++.|+.+|+.. +..+...++.|
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 643222 12233455666666654 4777778889999998877654 5577778999999999763 44788889999
Q ss_pred HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC------HHHHHHHHHCCChHHHHHHhhcC
Q 039940 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN------RKQIQAVIDAGLIVPLVNLLQDA 331 (449)
Q Consensus 258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~------~~~~~~l~~~~~~~~L~~ll~~~ 331 (449)
++-++... +........++++.++.+++.....++-+-+..++.|+...+ ......++..|+.+.+-.+...+
T Consensus 211 lWlLSF~~-~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNP-HAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhccH-HHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 99998764 355555678999999999988767888999999999998732 22344566777776665555443
Q ss_pred --chhHHHHHHHH-------HHHhhcc---------C---------C----HHHHHHHHHcC--ChHHHHhhcc-CCCHH
Q 039940 332 --EFDIKKEAAWA-------ISNATKA---------G---------T----QEQIKYLVREG--CIKPLCDLLL-CADPE 377 (449)
Q Consensus 332 --~~~v~~~a~~a-------L~~l~~~---------~---------~----~~~~~~l~~~~--~~~~L~~ll~-~~~~~ 377 (449)
|+++.+..-.. +..++.. | + .++...|.+++ ++..|..++. +.|+.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 55544322211 1111110 0 1 23455666544 4788999985 56788
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940 378 IVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW 445 (449)
Q Consensus 378 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~ 445 (449)
+...|+.=+..+++..+.. ...+.+.|+.+.+.+|+.|+|++|+..|...++++.
T Consensus 370 ~laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eeehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8888999999999887653 567789999999999999999999999999988764
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.52 E-value=4.1e-13 Score=102.97 Aligned_cols=118 Identities=33% Similarity=0.488 Sum_probs=110.2
Q ss_pred HHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 039940 230 VIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNR 309 (449)
Q Consensus 230 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 309 (449)
+.+.|+++.++.++.++++.++..+++++++++..++.....+.+.++++.+.+++.++ ++.++..++|+|+|++...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999999888888889999999999999998 99999999999999999887
Q ss_pred HHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhc
Q 039940 310 KQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATK 348 (449)
Q Consensus 310 ~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 348 (449)
.....+.+.|+++.+++.+...+.++++.++++|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 777788899999999999999999999999999999863
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.51 E-value=6e-13 Score=102.04 Aligned_cols=119 Identities=34% Similarity=0.548 Sum_probs=110.0
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC
Q 039940 60 EVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS 139 (449)
Q Consensus 60 ~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 139 (449)
.+++.|+++.+++++.+++ .+++..++++|.+++..+++....+.+.|+++.+++++.++++.++..++++|++++...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 3568899999999999998 899999999999999988999999999999999999999999999999999999999988
Q ss_pred CchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 140 PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 140 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
+.....+...|.++.+++.+ ++.+..+++.++|++.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77778888889999999999 66689999999999999873
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.49 E-value=8.7e-11 Score=114.57 Aligned_cols=356 Identities=17% Similarity=0.187 Sum_probs=250.4
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940 25 PAMVAGVWSD--DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK 102 (449)
Q Consensus 25 ~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 102 (449)
..+.+.+.+. +...+..++..+..+.... .+. ..+.+.+++++.+.+ ...+.-+--.+..+...+++...
T Consensus 7 ~el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~ 78 (526)
T PF01602_consen 7 QELAKILNSFKIDISKKKEALKKLIYLMMLG-YDI------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLI 78 (526)
T ss_dssp HHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CCC------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHH
Confidence 3455556555 7777777776665553322 221 256888999999887 89999999999999987776333
Q ss_pred HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940 103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
. +++.+.+-+.++++.++..|++++++++ .++..+ ..++.+.+.+ .++++.+++.|+.++..+....
T Consensus 79 l-----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~-----~l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~ 145 (526)
T PF01602_consen 79 L-----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE-----PLIPDVIKLL-SDPSPYVRKKAALALLKIYRKD 145 (526)
T ss_dssp H-----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH-----HHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHC
T ss_pred H-----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh-----HHHHHHHHHh-cCCchHHHHHHHHHHHHHhccC
Confidence 2 3688888899999999999999999996 223222 2456677777 7889999999999999999875
Q ss_pred CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 039940 183 PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIV 262 (449)
Q Consensus 183 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~ 262 (449)
|... ... .++.+..++.++|+.++..++.++..+ ..++.....+. ...+..+..++...++-.+..++.++..++
T Consensus 146 p~~~--~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 146 PDLV--EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp HCCH--HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred HHHH--HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 4321 112 689999999999999999999999999 33332211122 245666777778888989999999999888
Q ss_pred cCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHH
Q 039940 263 TGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWA 342 (449)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~a 342 (449)
...+..... ..+++.+..++.+. ++.|..+++.++..+... +. .-..+++.|..++.++++.++..++.+
T Consensus 221 ~~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~ 290 (526)
T PF01602_consen 221 PMEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDS 290 (526)
T ss_dssp SSSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred cCChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHH
Confidence 765554421 35788888899888 999999999999988653 33 222478899999998899999999999
Q ss_pred HHHhhccCCHHHHHHHHHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHH
Q 039940 343 ISNATKAGTQEQIKYLVREGCIKPLCDLLL-CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKK 421 (449)
Q Consensus 343 L~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (449)
|..++... +... . ........+. ++|..++..++.+|..++....- .. .++.
T Consensus 291 L~~l~~~~-~~~v----~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~--------------~~------Il~e 343 (526)
T PF01602_consen 291 LSQLAQSN-PPAV----F--NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV--------------KE------ILDE 343 (526)
T ss_dssp HHHHCCHC-HHHH----G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH--------------HH------HHHH
T ss_pred HHHhhccc-chhh----h--hhhhhhheecCCCChhHHHHHHHHHhhcccccch--------------hh------HHHH
Confidence 99999863 2221 1 2233333444 78899999999999999864432 11 1333
Q ss_pred HHHHh-cCCCHHHHHHHHHHHHH
Q 039940 422 IEDLK-SHGNNGIREKAVTILET 443 (449)
Q Consensus 422 l~~l~-~~~~~~i~~~a~~~i~~ 443 (449)
|.... +..+++++..+.+.|..
T Consensus 344 L~~~l~~~~d~~~~~~~i~~I~~ 366 (526)
T PF01602_consen 344 LLKYLSELSDPDFRRELIKAIGD 366 (526)
T ss_dssp HHHHHHHC--HHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhhhhHHHHHHH
Confidence 44444 44466666666665543
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=99.48 E-value=9.7e-10 Score=107.52 Aligned_cols=293 Identities=12% Similarity=0.095 Sum_probs=183.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 146 (449)
++.+.+=+.+++ +.++..|++.++++-. ++.... +++.+.+.+.+.++.||..|+.++.++...+|+ .+
T Consensus 107 INtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv 175 (746)
T PTZ00429 107 VNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LF 175 (746)
T ss_pred HHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cc
Confidence 444555555666 6777777776666654 333222 246667777788888888888888888766554 33
Q ss_pred hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH
Q 039940 147 LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK 226 (449)
Q Consensus 147 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 226 (449)
.+.+.++.+.+++ .+.++.|+.+|+.+|..+....+. ........+..++..+..-++..+..++.++......++..
T Consensus 176 ~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e 253 (746)
T PTZ00429 176 YQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES 253 (746)
T ss_pred cccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH
Confidence 4556777777776 788888999999988888776543 23344555666666666667777878887776533222211
Q ss_pred HHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 039940 227 IQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGD-DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT 305 (449)
Q Consensus 227 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 305 (449)
. ..++..+...+++.++.|...|++++.++.... +....... ..+-..++.++ ++ +++++.-+...+.-++
T Consensus 254 ~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 254 A-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALL 325 (746)
T ss_pred H-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHH
Confidence 1 256788888899999999999999999887542 22222221 12335566664 45 6788888888887776
Q ss_pred cCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHH
Q 039940 306 AGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKG 385 (449)
Q Consensus 306 ~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~ 385 (449)
...+..... -+..+.-..++ ...++...+..|..++.. ++... ++.-|.....+.|.+++..++.+
T Consensus 326 ~~~P~lf~~-----~~~~Ff~~~~D-p~yIK~~KLeIL~~Lane---~Nv~~-----IL~EL~eYa~d~D~ef~r~aIrA 391 (746)
T PTZ00429 326 VIFPNLLRT-----NLDSFYVRYSD-PPFVKLEKLRLLLKLVTP---SVAPE-----ILKELAEYASGVDMVFVVEVVRA 391 (746)
T ss_pred HHCHHHHHH-----HHHhhhcccCC-cHHHHHHHHHHHHHHcCc---ccHHH-----HHHHHHHHhhcCCHHHHHHHHHH
Confidence 655543221 12233222233 334677777777777653 33333 23445555556666777777777
Q ss_pred HHHHHHhhh
Q 039940 386 LENILKVGE 394 (449)
Q Consensus 386 l~~l~~~~~ 394 (449)
+.++....+
T Consensus 392 Ig~lA~k~~ 400 (746)
T PTZ00429 392 IASLAIKVD 400 (746)
T ss_pred HHHHHHhCh
Confidence 777665443
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.7e-11 Score=111.90 Aligned_cols=343 Identities=15% Similarity=0.169 Sum_probs=250.7
Q ss_pred hcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 22 EILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 22 ~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
..+|.|+.+|+. .+.++...|+++|..++.-- ......+++.+.||.|++-|..-.+.++.++++.+|-.|+.. .
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H 286 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---H 286 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---c
Confidence 457888888886 46999999999999997654 566777889999999998887766689999999999999984 3
Q ss_pred hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~ 179 (449)
-..+.+.|++...+.++.--+..++..|+.+..|.|..- ++--+.+++ .+|.|..++ +..|....+.++-|+..++
T Consensus 287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHH
Confidence 456788999999999998888999999999999999532 232334433 677777777 8888899999999999988
Q ss_pred cCCCC-C---ChhhhhchHHHHHHhhcCC----CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCC---
Q 039940 180 KGKPQ-P---PFDQVRPVLPALAQLIHLD----DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSP--- 248 (449)
Q Consensus 180 ~~~~~-~---~~~~~~~~l~~l~~ll~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~--- 248 (449)
..... . +.....+.+.-+.+++... +..+....++.+..++.+.+.....+.+.++...+..+|.....
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~n 443 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSAN 443 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcc
Confidence 77622 2 1222367777777777644 24456667777888888877777777777888888877754210
Q ss_pred ----c--ch------hhH---------------------------------------------------HHHHHHh----
Q 039940 249 ----S--VL------IPA---------------------------------------------------LRTVGNI---- 261 (449)
Q Consensus 249 ----~--v~------~~a---------------------------------------------------~~~l~~l---- 261 (449)
+ .+ +.. .+.+..+
T Consensus 444 as~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~ 523 (1051)
T KOG0168|consen 444 ASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDT 523 (1051)
T ss_pred cccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCc
Confidence 0 00 000 0011100
Q ss_pred ------------------hcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-CCCh
Q 039940 262 ------------------VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVID-AGLI 321 (449)
Q Consensus 262 ------------------~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~-~~~~ 321 (449)
....++..+.+. ..+++.|+++..+..++.||..+..+|..+.. .+.+.+..++. ..+-
T Consensus 524 ~t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vS 602 (1051)
T KOG0168|consen 524 GTSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVS 602 (1051)
T ss_pred ccchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHH
Confidence 000011112222 24788889998887799999999999999986 67777877774 5677
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc
Q 039940 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL 372 (449)
Q Consensus 322 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~ 372 (449)
..+-.+|..++..+..-|+...--++..-..-+-..|.++|++..+.++..
T Consensus 603 S~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 603 SHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 788888999898888888877777777655556778888999988888876
No 43
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.44 E-value=1.4e-10 Score=105.19 Aligned_cols=325 Identities=13% Similarity=0.113 Sum_probs=228.8
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhC-----CChHHHHHhhCCCChHHHHHHHHHHHHHhcCC
Q 039940 65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDH-----GAVPIFVKLLASPSDDVREQAVWALGNIVAHS 139 (449)
Q Consensus 65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 139 (449)
.....++.++.....+++....+..+..+...++.....+.+. .....++.+|..++.-+...++.++..+...+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4577788888877668999999999999998777777777654 46778888999999999999999999998765
Q ss_pred CchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHH
Q 039940 140 PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD--DEEVLRNVCWTLS 217 (449)
Q Consensus 140 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~ 217 (449)
+.........-....+...+....+...+..++.++..+.+.++.+......++++.|..+++.. +..++..++.|+.
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 43211111111233444555333457778888899999998876555444566899999999753 5688899999999
Q ss_pred HcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCC------hhhHHHHHhcCCHHHHHHHhccCC-
Q 039940 218 NLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTGD------DFQTQCVINHGAVPYLLALLINNH- 289 (449)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~~- 289 (449)
-++...+ ......+.++++.++.+++.. .+.+..-++.++.|+...+ ......+++.|+++.+-.+...+-
T Consensus 213 lLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~ 291 (429)
T cd00256 213 LLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD 291 (429)
T ss_pred HHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence 9887655 445566679999999999874 5668888999999998743 123334556666555544443321
Q ss_pred chhHHHHHHHHHH-------HHhc------------------C-C----HHHHHHHHHC--CChHHHHHHhh-cCchhHH
Q 039940 290 KKSIKKESCWTVS-------NITA------------------G-N----RKQIQAVIDA--GLIVPLVNLLQ-DAEFDIK 336 (449)
Q Consensus 290 ~~~v~~~a~~~l~-------nl~~------------------~-~----~~~~~~l~~~--~~~~~L~~ll~-~~~~~v~ 336 (449)
|+++....-..-. .++. | + .++...+-+. .++..|++++. +.++.+.
T Consensus 292 DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~l 371 (429)
T cd00256 292 DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIIL 371 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCccee
Confidence 4444332211111 1110 1 1 1222333332 25788999985 4488889
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940 337 KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK 391 (449)
Q Consensus 337 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~ 391 (449)
..||.=++.++.+. |..+..+-+-|+=..++.++.++|++++..|+.++..++-
T Consensus 372 aVAc~Dige~vr~~-P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 372 AVACHDIGEYVRHY-PRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred ehhhhhHHHHHHHC-ccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999984 6666666678999999999999999999999999998864
No 44
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=7.2e-10 Score=103.60 Aligned_cols=369 Identities=17% Similarity=0.179 Sum_probs=245.7
Q ss_pred hhcHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940 21 LEILPAMVAGVWSD--DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 21 ~~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 98 (449)
-.++..+++..+++ +..+|+.|+.+|.+.+...+...-.+.-.+=++...++.-++++ .+++..|+.||..+..-.-
T Consensus 171 N~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 171 NDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred hHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHH
Confidence 45677788888764 57899999999998876543333444445556677778888888 8999999999999998767
Q ss_pred hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC---------------C-chhhhH--hhcCCHHHHHHHHc
Q 039940 99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS---------------P-GCRNLV--LHEEALIPLLAQLN 160 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~---------------~-~~~~~~--~~~~~i~~l~~~l~ 160 (449)
+.....+....+..-+..+.++++++.-+++...+++|... | ....+. .-.+.+|.|++.|.
T Consensus 250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 77777777778888888899999999999999999998421 1 111111 01245777788775
Q ss_pred c-cc-----cHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhC
Q 039940 161 E-HA-----RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAG 234 (449)
Q Consensus 161 ~-~~-----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 234 (449)
+ ++ +-..-..|..||.-++..-.+ ..+..++|++-.-++++|..-+..+..+++.+-.+.+.....-+-.+
T Consensus 330 kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~q 406 (859)
T KOG1241|consen 330 KQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQ 406 (859)
T ss_pred hCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhh
Confidence 4 22 122333444444333332111 23347888888888999999999999999999988765554445558
Q ss_pred cHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHH-HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 039940 235 VCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ-CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQ 313 (449)
Q Consensus 235 ~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~ 313 (449)
.++.++.++.++.-.++..+.|+++.++...++.+. .......++.++..|.+ .|.+...+||++.+++.+.++...
T Consensus 407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~ 484 (859)
T KOG1241|consen 407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAV 484 (859)
T ss_pred hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999988888999999999999987654322 23345567777777775 478999999999999853222111
Q ss_pred HH-----HH---CCChHHHHHHhhc---CchhHHHHHHHHHHHhhccCCHHHHHHHHHc--CChHHHHhhcc-----CCC
Q 039940 314 AV-----ID---AGLIVPLVNLLQD---AEFDIKKEAAWAISNATKAGTQEQIKYLVRE--GCIKPLCDLLL-----CAD 375 (449)
Q Consensus 314 ~l-----~~---~~~~~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--~~~~~L~~ll~-----~~~ 375 (449)
.- .. ..++..|+...+. .+...|..|..+|..++....++....+.+. -.+..|-..++ ..|
T Consensus 485 s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~d 564 (859)
T KOG1241|consen 485 SNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLAD 564 (859)
T ss_pred CCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 00 00 0123334433333 3578999999999999998655544433221 12233333332 222
Q ss_pred H----HHHHHHHHHHHHHHHhhhh
Q 039940 376 P----EIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 376 ~----~~~~~~~~~l~~l~~~~~~ 395 (449)
. +++...+..|..+.+....
T Consensus 565 r~q~~eLQs~Lc~~Lq~i~rk~~~ 588 (859)
T KOG1241|consen 565 RAQLNELQSLLCNTLQSIIRKVGS 588 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc
Confidence 2 3445556666666655544
No 45
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=4.4e-10 Score=105.01 Aligned_cols=361 Identities=13% Similarity=0.074 Sum_probs=231.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHH
Q 039940 25 PAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVL 104 (449)
Q Consensus 25 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 104 (449)
..+++.|.+..+...-.|+.++..+++-+ -+.- .-.++++.|+..........+++.++.+++.+|.+-......-
T Consensus 93 ~~il~tL~~~ep~~~s~Aaq~va~IA~~E-lP~n---~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~ 168 (859)
T KOG1241|consen 93 NNILRTLGSPEPRRPSSAAQCVAAIACIE-LPQN---QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQ 168 (859)
T ss_pred HHHHHHcCCCCCCccchHHHHHHHHHHhh-Cchh---hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHH
Confidence 34556666666766677777777776653 1111 1123455666666665534689999999999998432222222
Q ss_pred HhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCCC-chhhhHhhcCCHH-HHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 105 IDHGAVPIFVKLLAS--PSDDVREQAVWALGNIVAHSP-GCRNLVLHEEALI-PLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 105 ~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~-~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
....++..++..+.. ++..+|-.|+.+|.|-..... .+... .+.+.+. ..++.- +++|.+++..|..||..+..
T Consensus 169 ~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E-~ern~iMqvvcEat-q~~d~~i~~aa~~ClvkIm~ 246 (859)
T KOG1241|consen 169 QSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE-MERNYIMQVVCEAT-QSPDEEIQVAAFQCLVKIMS 246 (859)
T ss_pred HHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH-hhhceeeeeeeecc-cCCcHHHHHHHHHHHHHHHH
Confidence 223677888887764 678999999999998653222 11111 1223322 233333 78899999999999998876
Q ss_pred CCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH---------------HHHHHH---hCcHHHHHH
Q 039940 181 GKPQPPF-DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK---------------IQAVIE---AGVCGPLVE 241 (449)
Q Consensus 181 ~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~---------------~~~~~~---~~~~~~L~~ 241 (449)
-...... -+....++.-+..++++++++...++..-+++|...-+. ...+.. .+++|.|+.
T Consensus 247 LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~ 326 (859)
T KOG1241|consen 247 LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLE 326 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHH
Confidence 5422211 122345566666777889999999998888887543220 011111 156788888
Q ss_pred hhCC-------CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 039940 242 LLGH-------PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQA 314 (449)
Q Consensus 242 ll~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 314 (449)
+|.. +++.....|-.||.-++....+. ++. .+++.+-+-++++ +..-|..|+.+++.+..+.......
T Consensus 327 ~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt 401 (859)
T KOG1241|consen 327 LLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLT 401 (859)
T ss_pred HHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhh
Confidence 8864 34667777777777665432221 222 4677777788888 9999999999999998764444434
Q ss_pred HHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940 315 VIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 315 l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
-+..+.+|.++.++.+++..++..+.|+++.++................+..+..-+ ...|.+-.+++|++.+|.+...
T Consensus 402 ~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 402 PIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAY 480 (859)
T ss_pred HHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHH
Confidence 444589999999999889999999999999999874211111111122333333333 2567888999999999997665
Q ss_pred hhh
Q 039940 395 AKK 397 (449)
Q Consensus 395 ~~~ 397 (449)
+..
T Consensus 481 eA~ 483 (859)
T KOG1241|consen 481 EAA 483 (859)
T ss_pred Hhc
Confidence 544
No 46
>PTZ00429 beta-adaptin; Provisional
Probab=99.37 E-value=8.6e-09 Score=101.00 Aligned_cols=331 Identities=14% Similarity=0.062 Sum_probs=227.4
Q ss_pred hhhcHHHHHHHhcCCCHHHHHHHHHHHH-HHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940 20 KLEILPAMVAGVWSDDNSMQLEAATQFR-RLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 98 (449)
+.|-+..+.+.|.+.+...+..|++.+. .+..| .+.. .+++.+++++.+++ .+++.-+...+.+++...+
T Consensus 30 ~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G--~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~p 100 (746)
T PTZ00429 30 RRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMG--RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQP 100 (746)
T ss_pred ccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC--CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccCh
Confidence 3456778888888888888888876554 44444 2222 24677888899888 8999999999999988666
Q ss_pred hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940 99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l 178 (449)
+..-. .++.+.+=+.++|+.+|..|+++++++-. +...+ -.+..+.+.+ .+.++.|++.|+.++.++
T Consensus 101 elalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e-----~l~~~lkk~L-~D~~pYVRKtAalai~Kl 167 (746)
T PTZ00429 101 EKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLE-----YTLEPLRRAV-ADPDPYVRKTAAMGLGKL 167 (746)
T ss_pred HHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHH-----HHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence 54322 37888888999999999999999998732 12211 2344566666 788999999999999999
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 179 CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 179 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
....|. .....+.++.+..++.+.|+.+..+++.++..+....+.... ...+.+..++..+..-++-.+...+.+|
T Consensus 168 y~~~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL 243 (746)
T PTZ00429 168 FHDDMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELL 243 (746)
T ss_pred HhhCcc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 887653 223356788899999999999999999999999866554322 2234566677777666665666666666
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHH
Q 039940 259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKK 337 (449)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~ 337 (449)
....-.++.. . ..++..+...+++. ++.|.-+|+.++.++... +++....+.. .+.+.++.++ +++++++-
T Consensus 244 ~~y~P~~~~e---~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqy 315 (746)
T PTZ00429 244 AAQRPSDKES---A--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQY 315 (746)
T ss_pred HhcCCCCcHH---H--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHH
Confidence 4432221211 1 24677888889998 999999999999999753 3343333322 2345666664 56789999
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940 338 EAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK 391 (449)
Q Consensus 338 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~ 391 (449)
.++..+.-++.. .+. ++.. -++.+.-..++ ...++...+++|..++.
T Consensus 316 vaLr~I~~i~~~-~P~----lf~~-~~~~Ff~~~~D-p~yIK~~KLeIL~~Lan 362 (746)
T PTZ00429 316 IVCKNIHALLVI-FPN----LLRT-NLDSFYVRYSD-PPFVKLEKLRLLLKLVT 362 (746)
T ss_pred HHHHHHHHHHHH-CHH----HHHH-HHHhhhcccCC-cHHHHHHHHHHHHHHcC
Confidence 999888777764 332 2222 13333333333 33578888888887763
No 47
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7.5e-10 Score=95.62 Aligned_cols=190 Identities=19% Similarity=0.247 Sum_probs=161.2
Q ss_pred CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHH
Q 039940 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLA 283 (449)
Q Consensus 204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ 283 (449)
.+.+-+..++.-|..++.+-+ +...+.+.|++..++..+.+++..+|..|+++++-.+.+++...+.+++.|+++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 356667777777777775544 3455888899999999999999999999999999999999999999999999999999
Q ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc--CchhHHHHHHHHHHHhhccCCHHHHHHHHHc
Q 039940 284 LLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD--AEFDIKKEAAWAISNATKAGTQEQIKYLVRE 361 (449)
Q Consensus 284 ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~ 361 (449)
++.+..+..+|..|.++++.+.++++.....+...++...|.+.+.+ .+...+..++..+..+... .......+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~-~~s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE-DKSDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-hhhhhhHHHHh
Confidence 99977567788999999999999999999999998899999999998 5788899999999999886 44444555567
Q ss_pred CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 362 GCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 362 ~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
++...+..+....+.++.+.++.++..+......
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 7788888888888889999988888777765544
No 48
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=6.3e-08 Score=91.28 Aligned_cols=325 Identities=14% Similarity=0.132 Sum_probs=240.4
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCCC---
Q 039940 66 IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS--PSDDVREQAVWALGNIVAHSP--- 140 (449)
Q Consensus 66 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~--- 140 (449)
-++.|++-..+..-.+-|..|++.|..++. .+|..+... +++.|++.|.. .|+++...++.++.++.....
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 378888877776557889999999999886 466666555 48999999975 578999999999999986442
Q ss_pred ---ch----------hh-hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh---hhhhchHHHHHHhhcC
Q 039940 141 ---GC----------RN-LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF---DQVRPVLPALAQLIHL 203 (449)
Q Consensus 141 ---~~----------~~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~---~~~~~~l~~l~~ll~~ 203 (449)
.. .+ ++...+.+..++..+ ...|-.|+.++...+.++.+..|.... .....++..++.+|++
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 11 11 223445666777777 677889999999999999988754322 2337889999999999
Q ss_pred CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC---C-CcchhhHHHHHHHhhcCChhhHHHHHhcCCHH
Q 039940 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP---S-PSVLIPALRTVGNIVTGDDFQTQCVINHGAVP 279 (449)
Q Consensus 204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~---~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 279 (449)
....+|..++..|..+...++...+.+.-.++++.|+.++... + .-|...++..+.|+...+....+.+.+.+.++
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 9999999999999999998887666666668999999999763 2 34788899999999999888888889999999
Q ss_pred HHHHHhccCC--ch--------hH--HHHHHHHHHHHhc-CCH-----HHHHHHHHCCChHHHHHHhhcC--chhHHHHH
Q 039940 280 YLLALLINNH--KK--------SI--KKESCWTVSNITA-GNR-----KQIQAVIDAGLIVPLVNLLQDA--EFDIKKEA 339 (449)
Q Consensus 280 ~L~~ll~~~~--~~--------~v--~~~a~~~l~nl~~-~~~-----~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a 339 (449)
.|.++|.... +. ++ ...+..++..+.. ++. .+.+.+...+++..|+.++.++ ..+++..+
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998885321 21 11 2235566666654 322 2223556789999999998776 67899999
Q ss_pred HHHHHHhhccCCHHHHHHHHHcC----------ChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhhh
Q 039940 340 AWAISNATKAGTQEQIKYLVREG----------CIKPLCDLLLCA-DPEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 340 ~~aL~~l~~~~~~~~~~~l~~~~----------~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~ 396 (449)
..++++++.+ +......|.+.. .+-.++.+..+. ....|..++.++..++...+..
T Consensus 338 iitvAevVRg-n~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 338 IITVAEVVRG-NARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred HHHHHHHHHh-chHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence 9999999987 455555555421 122344444544 4568899999999888766654
No 49
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.23 E-value=2.9e-10 Score=105.80 Aligned_cols=346 Identities=15% Similarity=0.123 Sum_probs=220.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHhcCCChhhh
Q 039940 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDY-PRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
.+..++.-++++.+..+..++....+....-+......-.....+..++-.++.++. ..+.......+.+-... +
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~----r 792 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG----R 792 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh----c
Confidence 355566666777777777777777666543322222222233344444444544331 23333344444333321 0
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh--hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940 102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR--NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~ 179 (449)
-.-.-..++..++..|++.++.+|++|+..++.++..-..+. +.+...|. .|.+.+ ...++++.-..+.++..++
T Consensus 793 ~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 793 VKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred cccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHH
Confidence 001111345677778899999999999999999874222221 12222232 245555 6678999888888777766
Q ss_pred cCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 180 KGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 180 ~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
... -.....-..+++|.|..+|++...+++.+++..++.++...++....---..+.--|+.+|+..+.++|..|...+
T Consensus 870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 554 1222333478999999999999999999999999999988776433222224455677788888999999999999
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHH
Q 039940 259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKE 338 (449)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~ 338 (449)
+.++.. +....++..|+.-|+.. +...|....-+++-.+..+.. -.++|.|++-...++..|+.-
T Consensus 950 G~Iaka-------IGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen 950 GYIAKA-------IGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred hHHHHh-------cCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHh
Confidence 999764 22234666777777766 555555444455544432211 137788887777788999999
Q ss_pred HHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940 339 AAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 339 a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 392 (449)
.+.+++.+.........+++.. +.+.|.+.+.+.|.--+..+..++..+.-.
T Consensus 1015 VLkalsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 9999999987643333444443 677788888888888888888777766543
No 50
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.23 E-value=1.7e-08 Score=88.57 Aligned_cols=326 Identities=13% Similarity=0.099 Sum_probs=227.2
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHh------CCChHHHHHhhCCCChHHHHHHHHHHHHHhcC
Q 039940 65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLID------HGAVPIFVKLLASPSDDVREQAVWALGNIVAH 138 (449)
Q Consensus 65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 138 (449)
..+..++.++...+.++....++..+..+...+......+.. .-.-..++.+|...+.-+.+...++++.++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 346778888888766788888888888888755444333322 13367788999999999999899999999865
Q ss_pred CCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC--CCHHHHHHHHHHH
Q 039940 139 SPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL--DDEEVLRNVCWTL 216 (449)
Q Consensus 139 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~~~~~~~~~l 216 (449)
.+.......-.-....+-..+.++.++.....+.+||..+...++-+.......++..++..+.+ .+-.++...+.|+
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 43321110000012344455545577788888999999999987555555556777777777733 3688899999999
Q ss_pred HHcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCCh------hhHHHHHhcCCHHHHHHHhccCC
Q 039940 217 SNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTGDD------FQTQCVINHGAVPYLLALLINNH 289 (449)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~L~~ll~~~~ 289 (449)
.-++.+++- .+.+...+.++.|..+++.. .+.|..-++.++.|++...+ ......+..++.+.+-.+-..+.
T Consensus 225 WlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky 303 (442)
T KOG2759|consen 225 WLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY 303 (442)
T ss_pred HHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence 998876654 46667779999999999874 56688889999999988763 33344556666666555554332
Q ss_pred -chhHHHHHHHHHHHHh-------c----------C----C---------HHHHHHHHH--CCChHHHHHHhhcC-chhH
Q 039940 290 -KKSIKKESCWTVSNIT-------A----------G----N---------RKQIQAVID--AGLIVPLVNLLQDA-EFDI 335 (449)
Q Consensus 290 -~~~v~~~a~~~l~nl~-------~----------~----~---------~~~~~~l~~--~~~~~~L~~ll~~~-~~~v 335 (449)
|+++....-+.-..+- + | + .++...+-+ ..++..|+.+|... +|.+
T Consensus 304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i 383 (442)
T KOG2759|consen 304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII 383 (442)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence 4433333222111111 1 0 0 122333333 23688999999877 6889
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940 336 KKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 336 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 392 (449)
...||.-++..+.+ -|+....+.+-|+=+.++++++++|++|+..|+.++..++-.
T Consensus 384 L~VAc~DIge~Vr~-yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 384 LCVACHDIGEYVRH-YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred eehhhhhHHHHHHh-CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 99999999999998 677778778889999999999999999999999999988753
No 51
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.22 E-value=2.9e-09 Score=93.29 Aligned_cols=304 Identities=13% Similarity=0.097 Sum_probs=209.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcH---HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPI---DEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 24 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
.+..+.+|..++..+...+.+.+..+++... ... ..-+. ...+-..+++....+....|++||..+.. -++.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~-~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~ey 190 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGN-CKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEY 190 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhcc-ccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccch
Confidence 5677888999999888888999999887542 211 11111 23344455553336788889999999998 6889
Q ss_pred hHHHHhCCChHHHHHhhC-C-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940 101 TKVLIDHGAVPIFVKLLA-S-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~-~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l 178 (449)
|..+...+++..++..+. + .+-.++.+.+.+++.++...+.. +.+...+.++.+...+..+..+.|.+.++.++.|+
T Consensus 191 R~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl 269 (442)
T KOG2759|consen 191 RYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL 269 (442)
T ss_pred hheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988999999883 2 56789999999999997765544 55677888999999998888999999999999999
Q ss_pred hcCCCCCChh------hhhchHHHHHHhhcC---CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcH-HHHHHhhC---C
Q 039940 179 CKGKPQPPFD------QVRPVLPALAQLIHL---DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVC-GPLVELLG---H 245 (449)
Q Consensus 179 ~~~~~~~~~~------~~~~~l~~l~~ll~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~L~~ll~---~ 245 (449)
+...+..... +...-++..++.|.. +|+++....-..-..+- +..+.+. -. +..-.+.. +
T Consensus 270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~----~svq~Ls---SFDeY~sEl~sG~L~ 342 (442)
T KOG2759|consen 270 LDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLK----NSVQDLS---SFDEYKSELRSGRLE 342 (442)
T ss_pred hccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHH----HHHHhhc---cHHHHHHHHHhCCcC
Confidence 9987543322 223333444444443 35666554332222221 1111110 01 11111111 1
Q ss_pred CCCcchhhHHHHHHHhhcCChhhHHHHH--hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH
Q 039940 246 PSPSVLIPALRTVGNIVTGDDFQTQCVI--NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVP 323 (449)
Q Consensus 246 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~ 323 (449)
-+|.-+.+-.| .++...+- +..++..|+++|+.+.||.+..-||.=++.+.++.|+....+.+.|+=..
T Consensus 343 WSP~Hk~e~FW---------~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~ 413 (442)
T KOG2759|consen 343 WSPVHKSEKFW---------RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKER 413 (442)
T ss_pred CCccccccchH---------HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHH
Confidence 12222322222 11122222 23478899999998867989999999999999999999988889999999
Q ss_pred HHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 324 LVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 324 L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
++++++.+|++||.+|+.|+..+..+
T Consensus 414 vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 414 VMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 99999999999999999999888754
No 52
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=7.6e-08 Score=90.74 Aligned_cols=326 Identities=17% Similarity=0.193 Sum_probs=240.7
Q ss_pred HhhhcHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHhcCC
Q 039940 19 TKLEILPAMVAGVWSD-DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE-DYPRLQFEAAWVLTNIASG 96 (449)
Q Consensus 19 ~~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~ 96 (449)
...+.|+.|+..+.+. -.+-|..|++.|..++. ..+..+. ..+++.+++.|+.+ .++++...++..+.++...
T Consensus 19 s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~ 93 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH 93 (970)
T ss_pred cHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 3478899999999764 48889999999998863 3344444 45588888888764 3489999999999999874
Q ss_pred Ch------hh----------hHHHH-hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhhc-CCHHHHHH
Q 039940 97 TS------VN----------TKVLI-DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLHE-EALIPLLA 157 (449)
Q Consensus 97 ~~------~~----------~~~~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~-~~i~~l~~ 157 (449)
++ +. .+.++ ..+.|..++..+...|-.+|..++..+.++.... ++.++.+... .++..++.
T Consensus 94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 42 11 12233 4588999999999999999999999999998655 4566665543 46889999
Q ss_pred HHcccccHHHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhcCC---C-HHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940 158 QLNEHARLSMLRIGTWTLSNLCKGKPQPP-FDQVRPVLPALAQLIHLD---D-EEVLRNVCWTLSNLSDGTNDKIQAVIE 232 (449)
Q Consensus 158 ~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~---~-~~~~~~~~~~l~~l~~~~~~~~~~~~~ 232 (449)
++ .+.-+.++..++..|..++++.+... ....+++...|..++... | .-|...++..+.|+..++..+...+.+
T Consensus 174 lL-~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE 252 (970)
T KOG0946|consen 174 LL-RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE 252 (970)
T ss_pred HH-hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence 99 67778889999999999999985554 444588999999999853 3 357889999999999998888888999
Q ss_pred hCcHHHHHHhhCC---CC-----Ccch-----hhHHHHHHHhhcCC-h-----hhHHHHHhcCCHHHHHHHhccC-Cchh
Q 039940 233 AGVCGPLVELLGH---PS-----PSVL-----IPALRTVGNIVTGD-D-----FQTQCVINHGAVPYLLALLINN-HKKS 292 (449)
Q Consensus 233 ~~~~~~L~~ll~~---~~-----~~v~-----~~a~~~l~~l~~~~-~-----~~~~~~~~~~~l~~L~~ll~~~-~~~~ 292 (449)
.+.+|.|..+|.. .+ |..+ ..++.++.-+.... . .....+...+++..|..++.++ -..+
T Consensus 253 ~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~d 332 (970)
T KOG0946|consen 253 GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPAD 332 (970)
T ss_pred cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHh
Confidence 9999999988864 22 2211 22444444444321 1 1223455788999999988776 3567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCC----------ChHHHHHHhhcC-chhHHHHHHHHHHHhhccC
Q 039940 293 IKKESCWTVSNITAGNRKQIQAVIDAG----------LIVPLVNLLQDA-EFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 293 v~~~a~~~l~nl~~~~~~~~~~l~~~~----------~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~ 350 (449)
++.++.-++++..+++......+.+.. ++-.++.+.... .+..|..+.+++......+
T Consensus 333 IltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 333 ILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 999999999999999888777776521 122344444433 6788999999999888763
No 53
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=7.5e-08 Score=89.88 Aligned_cols=226 Identities=15% Similarity=0.164 Sum_probs=168.5
Q ss_pred hhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940 16 NLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS 95 (449)
Q Consensus 16 ~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 95 (449)
++.-..+.-+.++.+|.+.-+.++..|+..+.++.-.- .+..+ ..+|.|++-|.+++ +.++.+|+.+++.++.
T Consensus 138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELAR 210 (877)
T ss_pred CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHh
Confidence 33444566778899999999999999999998886542 22222 34899999999999 8999999999999999
Q ss_pred CChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHH
Q 039940 96 GTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWT 174 (449)
Q Consensus 96 ~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 174 (449)
.+|.+-- ..-|.+.++|.. .|.=+.-..+..+++|+--.|... ...++++.+++.......+...+..+
T Consensus 211 KnPknyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNT 280 (877)
T KOG1059|consen 211 KNPQNYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNT 280 (877)
T ss_pred hCCcccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 8886543 345889998864 333344557788888876666543 34577999999555555566666655
Q ss_pred HHHh--hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchh
Q 039940 175 LSNL--CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252 (449)
Q Consensus 175 l~~l--~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 252 (449)
+... +.+. ........-+++.|-.++.++|++++.-.+.+++.+...++...+ ..-+.++.+|.+.++.+|.
T Consensus 281 VVa~s~s~g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRl 354 (877)
T KOG1059|consen 281 VVAVSMSSGM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRL 354 (877)
T ss_pred heeehhccCC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHH
Confidence 5433 3332 233444467788888888999999999999999999988876544 2357889999999999999
Q ss_pred hHHHHHHHhhcC
Q 039940 253 PALRTVGNIVTG 264 (449)
Q Consensus 253 ~a~~~l~~l~~~ 264 (449)
.|+..+.-+...
T Consensus 355 rALdLl~gmVsk 366 (877)
T KOG1059|consen 355 RALDLLYGMVSK 366 (877)
T ss_pred HHHHHHHHHhhh
Confidence 999999887753
No 54
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.19 E-value=1.7e-09 Score=97.02 Aligned_cols=229 Identities=14% Similarity=0.148 Sum_probs=164.6
Q ss_pred HHHHHHHHccc-ccHHHHHHHHHHHHHhhcCCCCCChhhhh-------chHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940 152 LIPLLAQLNEH-ARLSMLRIGTWTLSNLCKGKPQPPFDQVR-------PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT 223 (449)
Q Consensus 152 i~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-------~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 223 (449)
...+++++... .++++..+++..+..+....+........ .....+++++.++|..+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 45566777666 78999999999999999988754433321 24566677888999999999999999998776
Q ss_pred hhHHHHHHHhCcHHHHHHhhCC----CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHh------ccCCchhH
Q 039940 224 NDKIQAVIEAGVCGPLVELLGH----PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALL------INNHKKSI 293 (449)
Q Consensus 224 ~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll------~~~~~~~v 293 (449)
+....... .+.++.++..+.+ ++.+++..++.++.++... +..+..+.+.++++.+..++ .++...++
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 54433222 3455666666654 4556778899999999875 88888899999999999999 44447789
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc
Q 039940 294 KKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL 372 (449)
Q Consensus 294 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~ 372 (449)
+.+++.++.-++. +++....+.+.++++.|.++++.. ..++.+.+..++.|++..........++..|+++.+..+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 9999999999966 567788888889999999999776 78999999999999999866558888899888888877776
Q ss_pred C--CCHHHHHHHH
Q 039940 373 C--ADPEIVTVCL 383 (449)
Q Consensus 373 ~--~~~~~~~~~~ 383 (449)
. .|+++.+-.-
T Consensus 294 rk~~Dedl~edl~ 306 (312)
T PF03224_consen 294 RKWSDEDLTEDLE 306 (312)
T ss_dssp S--SSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 4 5888765433
No 55
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.5e-09 Score=90.94 Aligned_cols=188 Identities=15% Similarity=0.168 Sum_probs=156.5
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHH
Q 039940 162 HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE 241 (449)
Q Consensus 162 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 241 (449)
+.+.+-+..++.-|..++.+..+......-+++..++..+.+.+.++|..++++|+..+++++.....+++.|+++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 34566777788888888877655555555667777777999999999999999999999999998899999999999999
Q ss_pred hhCCCCC-cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 039940 242 LLGHPSP-SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN-HKKSIKKESCWTVSNITAGNRKQIQAVIDAG 319 (449)
Q Consensus 242 ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~ 319 (449)
.+.++++ .++..|+.+++.+.++++.....+...++...|...++++ .+...+..++..++.+..........+...+
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 9987654 4679999999999999999999999999999999999984 2788899999999999986555555555567
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
+-..+..+....+.++++.+..++..+...
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 777777777888999999999888887664
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.16 E-value=1.3e-09 Score=97.77 Aligned_cols=227 Identities=20% Similarity=0.270 Sum_probs=160.1
Q ss_pred hHHHHHhhC--CCChHHHHHHHHHHHHHhcCCCchhhhHhh------cCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940 110 VPIFVKLLA--SPSDDVREQAVWALGNIVAHSPGCRNLVLH------EEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181 (449)
Q Consensus 110 i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 181 (449)
...++.+|+ +.++++....+..+..+..+++...+.+.. .....++++++ +.+|..+...++.++..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 444445544 468999999999999999998877776654 23577888866 677999999999999999998
Q ss_pred CCCCChhhhhchHHHHHHhhc----CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh-----CC--CCCcc
Q 039940 182 KPQPPFDQVRPVLPALAQLIH----LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL-----GH--PSPSV 250 (449)
Q Consensus 182 ~~~~~~~~~~~~l~~l~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll-----~~--~~~~v 250 (449)
.+........+.++.+...+. +++.+++..++.++.++...+. ....+.+.++++.+..++ .+ .+..+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 866665534556666666555 3567788999999999996654 456688889999999999 22 34568
Q ss_pred hhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHhh
Q 039940 251 LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK-QIQAVIDAGLIVPLVNLLQ 329 (449)
Q Consensus 251 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~l~~~~~~~~L~~ll~ 329 (449)
...++.|++.++.. ++....+.+.++++.|..+++.....++.+-+..++.|++...+. ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 88899999999875 677777888889999999998776788999999999999975443 6777778777777766665
Q ss_pred cC--chhHHHHH
Q 039940 330 DA--EFDIKKEA 339 (449)
Q Consensus 330 ~~--~~~v~~~a 339 (449)
.+ |+++.+..
T Consensus 294 rk~~Dedl~edl 305 (312)
T PF03224_consen 294 RKWSDEDLTEDL 305 (312)
T ss_dssp S--SSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 44 66665543
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=6.6e-08 Score=91.43 Aligned_cols=370 Identities=15% Similarity=0.161 Sum_probs=195.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHH
Q 039940 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKV 103 (449)
Q Consensus 24 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 103 (449)
.|.+.++++..++.++..|+.+..++.... +.... .+++....+|.+.+ .-+...++..+..+|..+++....
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVE----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHH----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHHH
Confidence 344444555555555555555555554332 21111 12344444454444 355555555555555555544444
Q ss_pred HHhCCChHHHHHhhCC---------------CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccc--ccHH
Q 039940 104 LIDHGAVPIFVKLLAS---------------PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH--ARLS 166 (449)
Q Consensus 104 ~~~~~~i~~L~~~l~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~ 166 (449)
+.+ .++.|+..|+. +++-++...++.|+-+-.+++...+.+.+ .+..+..-...+ ....
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~GnA 292 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAGNA 292 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccchhH
Confidence 443 33444443321 34556666666666665555544433321 111111111000 0123
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC
Q 039940 167 MLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP 246 (449)
Q Consensus 167 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~ 246 (449)
+...++.++..+-... ....-++..|-++|.+.|.+++.-++..|......++...+ .-=..++.+|+++
T Consensus 293 ILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq-----rHr~tIleCL~Dp 362 (866)
T KOG1062|consen 293 ILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ-----RHRSTILECLKDP 362 (866)
T ss_pred HHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH-----HHHHHHHHHhcCC
Confidence 3444444444333222 11123455666777777777777777777777766664433 1225678888888
Q ss_pred CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHH-----------
Q 039940 247 SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQA----------- 314 (449)
Q Consensus 247 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~----------- 314 (449)
+..++..|+..+..+... .+... .++.|+..|.+. +++.+...+.-+..++. -.|+.+..
T Consensus 363 D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~a 434 (866)
T KOG1062|consen 363 DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTA 434 (866)
T ss_pred cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence 988999988888777654 22222 355677888777 78888887777777765 22222221
Q ss_pred --HHHCCChHHHHHHhhcC-------------------------chhHHHHHHHHHHHhh---cc-CCHHHHHHHHHcCC
Q 039940 315 --VIDAGLIVPLVNLLQDA-------------------------EFDIKKEAAWAISNAT---KA-GTQEQIKYLVREGC 363 (449)
Q Consensus 315 --l~~~~~~~~L~~ll~~~-------------------------~~~v~~~a~~aL~~l~---~~-~~~~~~~~l~~~~~ 363 (449)
+++..++..+++++.+. .+.+...|.|+|+.-. .. ++.+.-...-+..+
T Consensus 435 G~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdi 514 (866)
T KOG1062|consen 435 GDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDI 514 (866)
T ss_pred ccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHH
Confidence 12233556666666543 2334455666665432 11 11111112223456
Q ss_pred hHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHH
Q 039940 364 IKPLCDLLLC--ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440 (449)
Q Consensus 364 ~~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~ 440 (449)
+..|..++.+ .+..++..++.++.+|....... .+.+ -+.+..+..+-+.+++++|...
T Consensus 515 vd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-------------~~ri-----~~lI~~~~~s~~~elQQRa~E~ 575 (866)
T KOG1062|consen 515 VDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-------------SERI-----KQLISSYKSSLDTELQQRAVEY 575 (866)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-------------HHHH-----HHHHHHhcccccHHHHHHHHHH
Confidence 7778887765 35677888888888887655431 1112 2335566777788888887653
No 58
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=4.3e-08 Score=88.97 Aligned_cols=357 Identities=10% Similarity=0.072 Sum_probs=222.5
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
.+.+++++.++.+.|..++..|+..+.+++..-+.+ ....-+.+...+.++..+++ ..++. ++..+-.+..+-...
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~--v~~~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE--VLVYFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTE 158 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC--cccchHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccc
Confidence 467899999999999999999999999987653222 12223445677777777776 45544 444444333311111
Q ss_pred hH-HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH-hhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940 101 TK-VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV-LHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178 (449)
Q Consensus 101 ~~-~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l 178 (449)
.. .+--.+++|.|-.-+...++..|...+.-|..+-.. |.. +++ .-...++.+++++ .+++.+++..+-.+++++
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~-~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~f 235 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDL-EMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEF 235 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcH-HHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHH
Confidence 11 232235677777777778899999888888877332 322 222 1223566677788 777888888777777776
Q ss_pred hcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCc-chhhHHH
Q 039940 179 CKGKP-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPS-VLIPALR 256 (449)
Q Consensus 179 ~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~-v~~~a~~ 256 (449)
..... .+........++.++.-+.++++.++..++.-+.....-.+... ...-+|++..++.++.++++. ++..+..
T Consensus 236 L~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~ 314 (675)
T KOG0212|consen 236 LAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQM 314 (675)
T ss_pred HHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHH
Confidence 65542 22232456788899999999999999888766666655444322 234457888888888877664 4444332
Q ss_pred H---HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCch
Q 039940 257 T---VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEF 333 (449)
Q Consensus 257 ~---l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~ 333 (449)
. +..++.. +...+.+--..+++.+.+.+++. ..+.|..+..-+.-+-...+... ......+++.|+.-|.+.+.
T Consensus 315 ~n~~l~~l~s~-~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd 391 (675)
T KOG0212|consen 315 VNGLLLKLVSS-ERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSD 391 (675)
T ss_pred HHHHHHHHHhh-hhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchh
Confidence 2 2222221 11111111124678888889888 88899888866665544333221 22245789999999999999
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940 334 DIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 334 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 393 (449)
+|...++..+.+++...+..+... ++..|..++..+..-+...+.-++..++-.-
T Consensus 392 ~vvl~~L~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL 446 (675)
T KOG0212|consen 392 EVVLLALSLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQLCLLL 446 (675)
T ss_pred HHHHHHHHHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHh
Confidence 999999999999999743322211 3344445554444334445555555555433
No 59
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.09 E-value=2.6e-07 Score=84.26 Aligned_cols=373 Identities=13% Similarity=0.139 Sum_probs=229.1
Q ss_pred ccCCCCCCC--chhhHhhhcHHHHHHHhcC-------CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC
Q 039940 6 FLPSAPAPS--LNLQTKLEILPAMVAGVWS-------DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR 76 (449)
Q Consensus 6 ~~p~~~~~~--~~~~~~~~~i~~l~~~l~s-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~ 76 (449)
.+|..|.+. .-...-.+.+|.++++|.. +|+..-..|..+|.-++... ...+.+. ++..+=+-+++
T Consensus 303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~p-Vl~FvEqni~~ 377 (858)
T COG5215 303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMRP-VLGFVEQNIRS 377 (858)
T ss_pred hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHHH-HHHHHHHhccC
Confidence 356666633 1122234578999999953 34667777777776665322 1122221 34444455778
Q ss_pred CCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHH
Q 039940 77 EDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLL 156 (449)
Q Consensus 77 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 156 (449)
++ -.-++.|+.+++.+..+..+....-+-...+|.+...+.++..-+...++|+++.++..-+. .+-.++.++..+
T Consensus 378 ~~-w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~v 453 (858)
T COG5215 378 ES-WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM---IISPCGHLVLEV 453 (858)
T ss_pred ch-hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH---hcCccccccHHH
Confidence 88 48889999999999986544444444446799999999988888999999999999765332 233344444444
Q ss_pred HHHcc--cccHHHHHHHHHHHHHhhcCCCCCC---hhhh----hchHHHHHHhhc--CCCHHHHHHHHHHHHHcccCChh
Q 039940 157 AQLNE--HARLSMLRIGTWTLSNLCKGKPQPP---FDQV----RPVLPALAQLIH--LDDEEVLRNVCWTLSNLSDGTND 225 (449)
Q Consensus 157 ~~l~~--~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~----~~~l~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~ 225 (449)
..... ...+.+..+++|...|+..+.+... .... ..++..|++... .++...|.....+|+.+....++
T Consensus 454 sa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d 533 (858)
T COG5215 454 SASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD 533 (858)
T ss_pred HHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch
Confidence 33211 2346777899999999988763322 1112 333333333322 24567788888888887755544
Q ss_pred HHHHHHHhCcHHHHHHhhC-----------CC----CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCc
Q 039940 226 KIQAVIEAGVCGPLVELLG-----------HP----SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHK 290 (449)
Q Consensus 226 ~~~~~~~~~~~~~L~~ll~-----------~~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 290 (449)
....+. .|+......-+. .. ..+++.+-+..|..+.+.....++.+ +..++..++.+|++...
T Consensus 534 ~V~~~~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les~~~ 611 (858)
T COG5215 534 AVSDIL-AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILESTKP 611 (858)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhccCC
Confidence 322221 133333332221 21 23456666666666655433322211 22367788888888733
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhh
Q 039940 291 KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL 370 (449)
Q Consensus 291 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l 370 (449)
..+-.....++++++..-.+....... .++|.|.+-++..+..+...|...++.++..-+.++..+ ....+..|.++
T Consensus 612 t~~~~dV~~aIsal~~sl~e~Fe~y~~-~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~ 688 (858)
T COG5215 612 TTAFGDVYTAISALSTSLEERFEQYAS-KFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQC 688 (858)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHH
Confidence 445567788888887654454444443 699999999988899999999999999987644443332 33468889999
Q ss_pred ccCC--CHHHHHHHHHHHHHHHHh
Q 039940 371 LLCA--DPEIVTVCLKGLENILKV 392 (449)
Q Consensus 371 l~~~--~~~~~~~~~~~l~~l~~~ 392 (449)
++++ +.+++-..+.++..+...
T Consensus 689 lss~~~~R~lKPaiLSvFgDIAla 712 (858)
T COG5215 689 LSSEATHRDLKPAILSVFGDIALA 712 (858)
T ss_pred hcChhhccccchHHHHHHHHHHHH
Confidence 9876 445666666666665543
No 60
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.07 E-value=3.8e-09 Score=96.61 Aligned_cols=266 Identities=16% Similarity=0.128 Sum_probs=183.5
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh--hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC
Q 039940 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR--NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP 185 (449)
Q Consensus 108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~ 185 (449)
-++..++.+|++..+.+|.+|+...+.++..-..+. +.+...|. .|.+.+ ...++++....+.++..+.......
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence 356778888999999999999999888863221111 12222222 234444 5567888888887777766554222
Q ss_pred C-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC
Q 039940 186 P-FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG 264 (449)
Q Consensus 186 ~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 264 (449)
. ..-..+++|.+..+|++...++..+.+..++.++.+.++....---..+.--|++.|++.+.++|..|...++.++..
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 1 123478999999999999999999999999999988776433222224455677788888999999999999988764
Q ss_pred ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHH
Q 039940 265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAIS 344 (449)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~ 344 (449)
- ....++..|+.-|+.. +...|....-+++-.+..+-. ..++|.|+.=...++..|+.-.+.+++
T Consensus 761 i-------GPqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~ 825 (975)
T COG5181 761 I-------GPQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMC 825 (975)
T ss_pred c-------CHHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHH
Confidence 2 2234666777777766 555555555555544432211 136777777777778899999999999
Q ss_pred HhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940 345 NATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 345 ~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 393 (449)
.+.......-.+++.. ..+.|.+.+.+.|+--+..+...+..+.-.+
T Consensus 826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 9988644444455443 5677778888889888888888888776554
No 61
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.06 E-value=4.8e-08 Score=88.83 Aligned_cols=356 Identities=13% Similarity=0.076 Sum_probs=219.2
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCCcHHHHHHcC-C-HHHHHHhhcCCCCHHHHHHHHHHHHHhcC-----
Q 039940 24 LPAMVAGVWSDD-NSMQLEAATQFRRLLSIERSLPIDEVIQAG-I-VPRFVEFLLREDYPRLQFEAAWVLTNIAS----- 95 (449)
Q Consensus 24 i~~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-~-i~~L~~ll~~~~~~~~~~~a~~~L~~l~~----- 95 (449)
+..++.....+. ......++.++...+... .+...+-..+ + +......++......++..|+.+|.+-+.
T Consensus 135 m~~mv~nvg~eqp~~~k~~sl~~~gy~ces~--~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~n 212 (858)
T COG5215 135 MEEMVRNVGDEQPVSGKCESLGICGYHCESE--APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGN 212 (858)
T ss_pred HHHHHHhccccCchHhHHHHHHHHHHHhhcc--CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444443 456677788888886543 3322222222 2 22333345555557899999999987332
Q ss_pred -CChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHH
Q 039940 96 -GTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWT 174 (449)
Q Consensus 96 -~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 174 (449)
..++.++. ++...++.-+.++.+++..+..+|..+..-...+-+..++.-........+ ++++.++...+...
T Consensus 213 f~~E~erNy-----~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~qavEf 286 (858)
T COG5215 213 FCYEEERNY-----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQAVEF 286 (858)
T ss_pred hcchhhhch-----hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHH
Confidence 11223332 456777778889999999999999988644333333333322222233334 78889999999998
Q ss_pred HHHhhcCCCCCChh-----------------hhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHcccCChhHHHHH
Q 039940 175 LSNLCKGKPQPPFD-----------------QVRPVLPALAQLIHL-------DDEEVLRNVCWTLSNLSDGTNDKIQAV 230 (449)
Q Consensus 175 l~~l~~~~~~~~~~-----------------~~~~~l~~l~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~ 230 (449)
.+.+|.+....... ....++|.|+++|.. +|..+...+-.||--.+.... +.+
T Consensus 287 WsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g---d~i 363 (858)
T COG5215 287 WSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG---DKI 363 (858)
T ss_pred HHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh---hHh
Confidence 88888765221111 125688999999974 235566666666665554332 223
Q ss_pred HHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940 231 IEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK 310 (449)
Q Consensus 231 ~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 310 (449)
++ .++..+-.-+..+++.-++.+..+++.+..+..+....-+-...+|.+...+.++ .-.++..++|+++.++.+-+.
T Consensus 364 ~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 364 MR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred HH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHH
Confidence 33 2556666667888999999999999999888665544445567888888888877 888999999999999765433
Q ss_pred HHHHHHHCCChHHHHHHhhc---CchhHHHHHHHHHHHhhccCCHHHH--HHHHHcC---ChHHHHhhcc--CCCHHHHH
Q 039940 311 QIQAVIDAGLIVPLVNLLQD---AEFDIKKEAAWAISNATKAGTQEQI--KYLVREG---CIKPLCDLLL--CADPEIVT 380 (449)
Q Consensus 311 ~~~~l~~~~~~~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~--~~l~~~~---~~~~L~~ll~--~~~~~~~~ 380 (449)
.+ -.+|-++..+....- +.+.+..+++|+..|++.+-.+..+ ..++..- .+..|+..-+ ..+...|.
T Consensus 442 ~i---~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~ 518 (858)
T COG5215 442 II---SPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRV 518 (858)
T ss_pred hc---CccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 22 233444444433322 3678889999999999987432221 1111111 2222332222 23445778
Q ss_pred HHHHHHHHHHHhhhh
Q 039940 381 VCLKGLENILKVGEA 395 (449)
Q Consensus 381 ~~~~~l~~l~~~~~~ 395 (449)
.+..+|..++.+.++
T Consensus 519 s~fsaLgtli~~~~d 533 (858)
T COG5215 519 SLFSALGTLILICPD 533 (858)
T ss_pred HHHHHHHHHHhhcch
Confidence 888888888877654
No 62
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.1e-07 Score=89.31 Aligned_cols=330 Identities=16% Similarity=0.176 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHHhccCCCCc----HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHH
Q 039940 37 SMQLEAATQFRRLLSIERSLP----IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPI 112 (449)
Q Consensus 37 ~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 112 (449)
.-...++.+|.|+.+.. .+. .....--|.++.+..++.....+.++..|+.++..+.. +.++...+...|.+..
T Consensus 1740 ~~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence 35567899999998764 222 22233457788888888877668999999999988777 7899999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC---CCCChhh
Q 039940 113 FVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK---PQPPFDQ 189 (449)
Q Consensus 113 L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~ 189 (449)
|+.+|.+ -+..|+.++.+|+.+++.. +.....++.|++..+..++..+..++.+.+++..+..+..+. |......
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 9999975 5778999999999997654 455556688999999998878888999999999999999876 3333322
Q ss_pred hhchH-----------HHHHHhhcC--CCHHH------HHHHHHHHHHcc--------cCC------hhH----------
Q 039940 190 VRPVL-----------PALAQLIHL--DDEEV------LRNVCWTLSNLS--------DGT------NDK---------- 226 (449)
Q Consensus 190 ~~~~l-----------~~l~~ll~~--~~~~~------~~~~~~~l~~l~--------~~~------~~~---------- 226 (449)
....- ...++++.. +++++ +...-..+..+. .++ +++
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence 22222 223333331 22221 222222222211 000 000
Q ss_pred --------HHHHHH------------hCcHHHHHHhhCCCCCc--chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH
Q 039940 227 --------IQAVIE------------AGVCGPLVELLGHPSPS--VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL 284 (449)
Q Consensus 227 --------~~~~~~------------~~~~~~L~~ll~~~~~~--v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 284 (449)
...+.+ .++++.+..++..++++ .......++..+.+..+...+++-..|.+|+++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 001111 14566677777665543 33333444555566667777777788999999999
Q ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCCh
Q 039940 285 LINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCI 364 (449)
Q Consensus 285 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~ 364 (449)
+... +..+-..|..+|..++. +.-....+.....+..++..++.. +...--|+.+|..+......+........|++
T Consensus 2056 m~~~-n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred HHhc-CCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence 9887 77777899999999976 345556666666677777777653 35556889999999987666777777889999
Q ss_pred HHHHhhccC
Q 039940 365 KPLCDLLLC 373 (449)
Q Consensus 365 ~~L~~ll~~ 373 (449)
+.|+.+++.
T Consensus 2133 pyLL~LLd~ 2141 (2235)
T KOG1789|consen 2133 PYLLQLLDS 2141 (2235)
T ss_pred HHHHHHhcc
Confidence 999999975
No 63
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=2.3e-08 Score=90.69 Aligned_cols=321 Identities=16% Similarity=0.112 Sum_probs=208.8
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc
Q 039940 62 IQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141 (449)
Q Consensus 62 ~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 141 (449)
.-.+++++.+..+.+++ ..++..|+..+.|++.. ...........+...++++..+.+..++. +...+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence 44677889999999998 79999999999999873 11222222335677888888777777765 44555555433221
Q ss_pred hhh-hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940 142 CRN-LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLS 220 (449)
Q Consensus 142 ~~~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 220 (449)
-+. .+--.+.++-+-..+ ...++..+...+.-+..+-..++..-......+++.+..+|..+.++++.-+=.++.+..
T Consensus 158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 111 111112333333333 456788888888777777665444444455889999999999999998866555554433
Q ss_pred ---cCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchh-HHHH
Q 039940 221 ---DGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKS-IKKE 296 (449)
Q Consensus 221 ---~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-v~~~ 296 (449)
++++.. +-....++.++.-+.++++.++..|+..+..+..-.+... ...-+|++..++.++.+. +.. ++..
T Consensus 237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~~~ 311 (675)
T KOG0212|consen 237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIKEY 311 (675)
T ss_pred HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHHHH
Confidence 122221 1122678888999999999999999888887776533322 233467888888888877 443 4433
Q ss_pred HHHH---HHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHH-HcCChHHHHhhcc
Q 039940 297 SCWT---VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLV-REGCIKPLCDLLL 372 (449)
Q Consensus 297 a~~~---l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~~~~L~~ll~ 372 (449)
+... +..++. ++.....+--..+++.+...+.++..+.|..++..+..+-.....+ .+. .......|..-++
T Consensus 312 a~~~n~~l~~l~s-~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q---l~~h~~~if~tLL~tLs 387 (675)
T KOG0212|consen 312 AQMVNGLLLKLVS-SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ---LLVHNDSIFLTLLKTLS 387 (675)
T ss_pred HHHHHHHHHHHHh-hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch---hhhhccHHHHHHHHhhc
Confidence 3222 222222 2221112111246788888899999999999998888887653222 222 3457888999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhh
Q 039940 373 CADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 373 ~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
+.+.++...++..+.+++.....
T Consensus 388 d~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 388 DRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred CchhHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999977655
No 64
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=9.6e-07 Score=81.84 Aligned_cols=315 Identities=16% Similarity=0.111 Sum_probs=211.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhh
Q 039940 66 IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNL 145 (449)
Q Consensus 66 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 145 (449)
++..+..-+..+. +.+|.....++..+....... -...+.+.+.+++......-+..+.+.++.+..+... ..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGL----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhcc----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence 4677788888888 899998888888776521111 1113467788888888888889999999999776532 34
Q ss_pred HhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChh
Q 039940 146 VLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND 225 (449)
Q Consensus 146 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 225 (449)
..+.+.+..+.....+..+..-++.+..+....+..-...........+|.++....+..+.++..+..+...+.+.-+.
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 44667777888777433333334334444444443332223333456677777777777888998888877766544322
Q ss_pred H-HHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHH
Q 039940 226 K-IQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNI 304 (449)
Q Consensus 226 ~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl 304 (449)
. .+ .+++.++.-+....|..+..++..++.++...+.+.. ..-..++|.+.+.|.+. .+++|+.+..++.++
T Consensus 250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 1 11 2445555555555889999999999999887666554 33467999999999999 999999999999999
Q ss_pred hc--CCHHHHHHHHH------------------------------CC----ChHHHHHHhhcCchhHHHHHHHHHHHhhc
Q 039940 305 TA--GNRKQIQAVID------------------------------AG----LIVPLVNLLQDAEFDIKKEAAWAISNATK 348 (449)
Q Consensus 305 ~~--~~~~~~~~l~~------------------------------~~----~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 348 (449)
++ .+++ ++.++. .. ++|.|.+-+...+..+++.++..+.|++.
T Consensus 323 ~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 323 GSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred HHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 86 4443 222111 01 23334444444577888999999999988
Q ss_pred cC-CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940 349 AG-TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 349 ~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 396 (449)
-- ++.....++. .+++.|-..+.+..|++|..+..+|..+.+.....
T Consensus 402 LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 402 LVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred hhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 64 4444433332 26777777777789999999999998888776554
No 65
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.97 E-value=1.6e-06 Score=81.65 Aligned_cols=385 Identities=17% Similarity=0.179 Sum_probs=234.9
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc-------CCCCHHHHHHHHHHHHHhc
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLL-------REDYPRLQFEAAWVLTNIA 94 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-------~~~~~~~~~~a~~~L~~l~ 94 (449)
+.+-.+++-..|+|.+.....+..+.+++... ......+...++|.++.... ..++..+...++.+-..+.
T Consensus 636 evmlil~rEf~sPDeemkkivLKVv~qcc~t~--Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG 713 (1172)
T KOG0213|consen 636 EVMLILIREFGSPDEEMKKIVLKVVKQCCATD--GVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVG 713 (1172)
T ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHhccc--CCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhC
Confidence 44556677778899988888888888887653 33344555667777766543 2222233333333333322
Q ss_pred CCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc--hhhhHhhcCCHHHHHHHHcc-cccHHHHHHH
Q 039940 95 SGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG--CRNLVLHEEALIPLLAQLNE-HARLSMLRIG 171 (449)
Q Consensus 95 ~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a 171 (449)
. ...+..++.-+.++++..|..++.+..++...-+. +... .+...+..++..+.. +.+..+.-.+
T Consensus 714 ~-----------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~dider-leE~lidgil~Afqeqtt~d~vml~g 781 (1172)
T KOG0213|consen 714 S-----------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDER-LEERLIDGILYAFQEQTTEDSVMLLG 781 (1172)
T ss_pred c-----------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHH-HHHHHHHHHHHHHHhcccchhhhhhh
Confidence 2 12355666667778888888887777776543221 1111 133445556655532 3334455555
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH--HHHHHHhCcHHHHHHhhCCCCCc
Q 039940 172 TWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK--IQAVIEAGVCGPLVELLGHPSPS 249 (449)
Q Consensus 172 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~~L~~ll~~~~~~ 249 (449)
..++.+-... +.......++..++..|++..+.++..++..++.++.--... .+.+-..| -.|...|....++
T Consensus 782 fg~V~~~lg~---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypE 856 (1172)
T KOG0213|consen 782 FGTVVNALGG---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPE 856 (1172)
T ss_pred HHHHHHHHhh---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHH
Confidence 5555543332 223344577788899999999999999999998877321111 11122222 3567778888899
Q ss_pred chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH--HHHHHCCChHHHHHH
Q 039940 250 VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI--QAVIDAGLIVPLVNL 327 (449)
Q Consensus 250 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~--~~l~~~~~~~~L~~l 327 (449)
+.-..+.++..+...-.-....-=-.+++|.|..+|++. ..+++.+....++.++-..++.+ .+.. .+--.|+++
T Consensus 857 vLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWM--RIcfeLlel 933 (1172)
T KOG0213|consen 857 VLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWM--RICFELLEL 933 (1172)
T ss_pred HHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHH
Confidence 888887777766543110000000247899999999999 99999999999999996544422 1111 244467888
Q ss_pred hhcCchhHHHHHHHHHHHhhccCCHHHH-HH---------------------HH-H-cC---ChHHHHhhccCCCHHHHH
Q 039940 328 LQDAEFDIKKEAAWAISNATKAGTQEQI-KY---------------------LV-R-EG---CIKPLCDLLLCADPEIVT 380 (449)
Q Consensus 328 l~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~---------------------l~-~-~~---~~~~L~~ll~~~~~~~~~ 380 (449)
|...+.++|.+|..+++.++..-.+..+ .. ++ + +| +++.|++--..++-.++.
T Consensus 934 LkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen 934 LKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred HHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHH
Confidence 8999999999999999998886443321 11 11 1 22 355555555566777899
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 039940 381 VCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILE 442 (449)
Q Consensus 381 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~ 442 (449)
.++++++-+|++..+... .|.-.+ ...|+.-..+.+.-.++.|..+|.
T Consensus 1014 GVLkalsf~Feyigemsk---------dYiyav-----~PlleDAlmDrD~vhRqta~~~I~ 1061 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEMSK---------DYIYAV-----TPLLEDALMDRDLVHRQTAMNVIK 1061 (1172)
T ss_pred hHHHHHHHHHHHHHHHhh---------hHHHHh-----hHHHHHhhccccHHHHHHHHHHHH
Confidence 999999999988765432 122222 344444455555555666555554
No 66
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=8.9e-08 Score=92.92 Aligned_cols=270 Identities=19% Similarity=0.238 Sum_probs=203.8
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHH
Q 039940 35 DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFV 114 (449)
Q Consensus 35 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 114 (449)
...-|+.|...-....+.++.++-+ +|.+++.|-+ .--+..|+..|+....-.+-....-...|+.|+++
T Consensus 449 FFteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVL 518 (1387)
T KOG1517|consen 449 FFTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVL 518 (1387)
T ss_pred hHHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHH
Confidence 3455666766666666555455444 6667776665 34467899999999987788888888899999999
Q ss_pred HhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccc--ccHHHHHHHHHHHHHhhcCCCCCChhhh-h
Q 039940 115 KLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH--ARLSMLRIGTWTLSNLCKGKPQPPFDQV-R 191 (449)
Q Consensus 115 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~ 191 (449)
++|+++-.+++...+.+.+.+...++.++..+.+.++-..++..+..+ -+++-+..++++|+.++.+.+..+.... .
T Consensus 519 KLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~ 598 (1387)
T KOG1517|consen 519 KLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG 598 (1387)
T ss_pred HHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc
Confidence 999999999999999999999888888887777777776777777432 2468888999999999999755554444 6
Q ss_pred chHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC----Ch
Q 039940 192 PVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG----DD 266 (449)
Q Consensus 192 ~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~----~~ 266 (449)
+.+..+...+.++ .+-++..++-||+.|-.+.+...-.-.+.+..+.|+.+|.++-++||..|+++|+.+..+ .+
T Consensus 599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd 678 (1387)
T KOG1517|consen 599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD 678 (1387)
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc
Confidence 7778888888875 678899999999999988765444445567889999999999999999999999999875 23
Q ss_pred hhHHHH------------HhcCCH---HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940 267 FQTQCV------------INHGAV---PYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV 315 (449)
Q Consensus 267 ~~~~~~------------~~~~~l---~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 315 (449)
+....+ ++..+. -.++.+++.+ .+-++.+.+-+++.+..+........
T Consensus 679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~v 741 (1387)
T KOG1517|consen 679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVV 741 (1387)
T ss_pred hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHH
Confidence 322222 222222 2566677778 88999999999999987665544433
No 67
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.92 E-value=8.4e-07 Score=85.58 Aligned_cols=355 Identities=12% Similarity=0.111 Sum_probs=222.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHH
Q 039940 26 AMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLI 105 (449)
Q Consensus 26 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 105 (449)
.+++.+.+.|-+.|+.|+.-|.+=+... ....+.=-...++..++++|.+.+ .++|..|+.|++-++..-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le-- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE-- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence 6788888999999999998877655432 111221123456888999999999 899999999999999744333221
Q ss_pred hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHH----cccc-cHHHHHHHHHHHHHhhc
Q 039940 106 DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQL----NEHA-RLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 106 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l----~~~~-~~~~~~~a~~~l~~l~~ 180 (449)
..++.|+.-+-++.+..|..+.-.|......-+......+...+.+.+...+ .... ...++..++..+.-+..
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 2356666665554455554444444333332222222222333444444443 2222 23356666666555444
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHH
Q 039940 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPALRTVG 259 (449)
Q Consensus 181 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~ 259 (449)
.....-......++..++.-+.++-..++..++.+|+.++...+.. .+ .++++.+++-|..+ .+.....-..+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 4322222345677777787788888999999999999998654421 11 24566666666553 3444555667777
Q ss_pred HhhcCChhhHHHHHhcCCHHHHHHHh---ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc------
Q 039940 260 NIVTGDDFQTQCVINHGAVPYLLALL---INNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD------ 330 (449)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~------ 330 (449)
.+++........ .-..+++.+.+.. +.. +.++|+....++..+...+|..+...+. .++..+++.+..
T Consensus 239 ~i~r~ag~r~~~-h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGS-HLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhc-ccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence 777643322111 1235778888887 666 8889999999999998877765533322 233344443321
Q ss_pred -------------------------C---chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHH
Q 039940 331 -------------------------A---EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVC 382 (449)
Q Consensus 331 -------------------------~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~ 382 (449)
+ +..||++|+.++..+... ..+....+.+. +-+.+++-+++..+.++...
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q~-l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQT-LGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHH
Confidence 0 235999999999999886 55665555543 66788888888888888888
Q ss_pred HHHHHHHHHhhhh
Q 039940 383 LKGLENILKVGEA 395 (449)
Q Consensus 383 ~~~l~~l~~~~~~ 395 (449)
+.++..+++.-..
T Consensus 394 f~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 394 FHAYIALLKQTRP 406 (1233)
T ss_pred HHHHHHHHHcCCC
Confidence 8888888765543
No 68
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.9e-05 Score=67.48 Aligned_cols=359 Identities=16% Similarity=0.139 Sum_probs=233.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCCc---HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940 26 AMVAGVWSDDNSMQLEAATQFRRLLSIERSLP---IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK 102 (449)
Q Consensus 26 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 102 (449)
.+-..|..++..+...++..+..+....+... +..+++.++++.++..+...+ .++...|...+..++. .+....
T Consensus 86 dLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaale 163 (524)
T KOG4413|consen 86 DLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAALE 163 (524)
T ss_pred HHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHHHH
Confidence 33344456778888888888887776542222 334568999999999999999 7999999999999998 787778
Q ss_pred HHHhCCChHHH--HHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 103 VLIDHGAVPIF--VKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 103 ~~~~~~~i~~L--~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
.+......+-+ ..+...-+.-.|...+..+..+.+-+|.....+...|.+..+..-+....|.-++.+++.....+..
T Consensus 164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 78777655433 3333345667788888899999888998888888889898888888666788888899998888888
Q ss_pred CCCCCChhhhhchHHHHHHhhcC--CCHHHHHHHHHHHHHcccCChh---HHHHHHHh--CcHHHHHHhhCCCCCcchhh
Q 039940 181 GKPQPPFDQVRPVLPALAQLIHL--DDEEVLRNVCWTLSNLSDGTND---KIQAVIEA--GVCGPLVELLGHPSPSVLIP 253 (449)
Q Consensus 181 ~~~~~~~~~~~~~l~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~--~~~~~L~~ll~~~~~~v~~~ 253 (449)
......+...++.++.+..++.- ++|--.-.++...+.+.....- ..+.+.+. -.++..+..+...+++....
T Consensus 244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaiea 323 (524)
T KOG4413|consen 244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEA 323 (524)
T ss_pred HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHH
Confidence 77667777778999999988873 3443333344333333211100 00111111 23445556667789999999
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCC--HHHH-HHHhccCCchhHHHHHHHHHHHHhcC---CHHHH---------HHHH--
Q 039940 254 ALRTVGNIVTGDDFQTQCVINHGA--VPYL-LALLINNHKKSIKKESCWTVSNITAG---NRKQI---------QAVI-- 316 (449)
Q Consensus 254 a~~~l~~l~~~~~~~~~~~~~~~~--l~~L-~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~---------~~l~-- 316 (449)
|.-+++.+-+. .+..+.+.+.|- ...+ ......+ ...-+..+..+|.+++.. .++++ ..++
T Consensus 324 AiDalGilGSn-teGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifd 401 (524)
T KOG4413|consen 324 AIDALGILGSN-TEGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFD 401 (524)
T ss_pred HHHHHHhccCC-cchhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHH
Confidence 99999998765 333444444332 2222 2333322 333456677888888751 22211 1111
Q ss_pred ---H---CCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHH-HcCChHHHHhhccCCC---HHHHHHHHHHH
Q 039940 317 ---D---AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLV-REGCIKPLCDLLLCAD---PEIVTVCLKGL 386 (449)
Q Consensus 317 ---~---~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~~~~L~~ll~~~~---~~~~~~~~~~l 386 (449)
+ -.-...+..+++.+.++++..+..++..++.. +-..+.++ ..+.++...+.-...+ .+-+..+++++
T Consensus 402 aaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq--PWalkeifakeefieiVtDastEhaKaakdAkYeccKAi 479 (524)
T KOG4413|consen 402 AAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ--PWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAI 479 (524)
T ss_pred HHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC--cHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHH
Confidence 1 13355667777888999999999999999874 44444444 4677766665543322 22344555555
Q ss_pred HHHH
Q 039940 387 ENIL 390 (449)
Q Consensus 387 ~~l~ 390 (449)
.+-+
T Consensus 480 aeaf 483 (524)
T KOG4413|consen 480 AEAF 483 (524)
T ss_pred HHHH
Confidence 5443
No 69
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.3e-06 Score=81.40 Aligned_cols=287 Identities=15% Similarity=0.189 Sum_probs=159.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh-
Q 039940 69 RFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL- 147 (449)
Q Consensus 69 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~- 147 (449)
.+.+=|++++ .-++-.|+.+|++++. +|....+ .|-+.+++++.++.+|..|+.+...+.+..|...+.+.
T Consensus 111 slknDL~s~n-q~vVglAL~alg~i~s--~Emardl-----apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~ 182 (866)
T KOG1062|consen 111 SLKNDLNSSN-QYVVGLALCALGNICS--PEMARDL-----APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI 182 (866)
T ss_pred HHHhhccCCC-eeehHHHHHHhhccCC--HHHhHHh-----hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH
Confidence 3444456666 5666677777777775 4444432 46666777777777777777777777665554433222
Q ss_pred -------h--cCC----HHHHHHHHccccc-----HHHHHHHHHHHHHhhcCC--CCCChhhh-hchHH----HHHHhhc
Q 039940 148 -------H--EEA----LIPLLAQLNEHAR-----LSMLRIGTWTLSNLCKGK--PQPPFDQV-RPVLP----ALAQLIH 202 (449)
Q Consensus 148 -------~--~~~----i~~l~~~l~~~~~-----~~~~~~a~~~l~~l~~~~--~~~~~~~~-~~~l~----~l~~ll~ 202 (449)
+ .|+ +..+..++..+++ ..+.......|.++.... |......+ .++++ .++.+|.
T Consensus 183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 1 122 3333344422111 234555666677776655 22222111 23332 2344555
Q ss_pred CCCHHHHHHHHHHHHHcccCChhHH---HHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH------
Q 039940 203 LDDEEVLRNVCWTLSNLSDGTNDKI---QAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI------ 273 (449)
Q Consensus 203 ~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~------ 273 (449)
++|++........|..++.+.+... ..+.- ..+..+..+ .++..+|..|+.+|+.+..+.+.+.+.+.
T Consensus 263 q~d~daSd~M~DiLaqvatntdsskN~GnAILY-E~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r 339 (866)
T KOG1062|consen 263 QNDADASDLMNDILAQVATNTDSSKNAGNAILY-ECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLR 339 (866)
T ss_pred CCCccHHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHh
Confidence 6676666666666666665433211 11110 111122111 23444555555555555544443322110
Q ss_pred ----hc----CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHH
Q 039940 274 ----NH----GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN 345 (449)
Q Consensus 274 ----~~----~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~ 345 (449)
+. .-=..++++|+++ |..+|+.|...+..+.-.+ ++.. ++..|+..|...+++++...+..+..
T Consensus 340 ~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~~--Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~~ 411 (866)
T KOG1062|consen 340 VVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNES--NVRV-----MVKELLEFLESSDEDFKADIASKIAE 411 (866)
T ss_pred hhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhccc--cHHH-----HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 01 1123578889999 9999999998888776533 2323 45678888888899999999999999
Q ss_pred hhccCCHHHHHH-------------HHHcCChHHHHhhccCC
Q 039940 346 ATKAGTQEQIKY-------------LVREGCIKPLCDLLLCA 374 (449)
Q Consensus 346 l~~~~~~~~~~~-------------l~~~~~~~~L~~ll~~~ 374 (449)
++..-.++.+.. +++.+++..++.++.+.
T Consensus 412 laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 412 LAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 888755543322 22344677777777665
No 70
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=1.1e-06 Score=85.78 Aligned_cols=389 Identities=14% Similarity=0.120 Sum_probs=254.6
Q ss_pred hhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 039940 17 LQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASG 96 (449)
Q Consensus 17 ~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 96 (449)
-..+.+..+..-++.+.+.+.++..++.-+.+++... .......++++.+.++..+.. ..++..|...+.++..-
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l 306 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDL 306 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHh
Confidence 3455566666666667788999999998888887543 226677899999999999988 79999999988888762
Q ss_pred ChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-C-----c--------------hhhh-----------
Q 039940 97 TSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-P-----G--------------CRNL----------- 145 (449)
Q Consensus 97 ~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~-----~--------------~~~~----------- 145 (449)
..... -....+.+.+++..++++..++.........+...- + . -+..
T Consensus 307 ~~~~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~ 384 (759)
T KOG0211|consen 307 LDDDD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLAC 384 (759)
T ss_pred cCCch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhh
Confidence 21111 122245788888888888887777666555554210 0 0 0000
Q ss_pred ---------HhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHH
Q 039940 146 ---------VLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTL 216 (449)
Q Consensus 146 ---------~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l 216 (449)
+.....++.+-.+. .+.++.++...+..+..+.--.+ .........|.....++..++.++.+..+.+
T Consensus 385 ~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~l 461 (759)
T KOG0211|consen 385 YLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKL 461 (759)
T ss_pred hcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHH
Confidence 00000111111111 23333333333333333222211 2223356778888888888999999999877
Q ss_pred HHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940 217 SNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKE 296 (449)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 296 (449)
..+-..++...........++.+..+-....++++.+..+.+..++.... ..+++...-+.+...+.+. ...++..
T Consensus 462 s~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~ 537 (759)
T KOG0211|consen 462 SLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREA 537 (759)
T ss_pred HHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHH
Confidence 66654444333334555677888888777888999999998888875422 3344555666777777777 7889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCH
Q 039940 297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADP 376 (449)
Q Consensus 297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~ 376 (449)
|+..+..++..... .......++.++.+...++...|...+.++..++...+.+ +..+.+++.+.++..+..+
T Consensus 538 aa~~l~~l~~~~G~---~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----i~~~~Llp~~~~l~~D~va 610 (759)
T KOG0211|consen 538 AARNLPALVETFGS---EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----ITCEDLLPVFLDLVKDPVA 610 (759)
T ss_pred HHHHhHHHHHHhCc---chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----HHHHHHhHHHHHhccCCch
Confidence 99998888752111 1122346777777777777888998888888777654333 3444578999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 039940 377 EIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILE 442 (449)
Q Consensus 377 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~ 442 (449)
.|+..++..|..+...-... .++....+.++.+-.+++.+++-+|.....
T Consensus 611 nVR~nvak~L~~i~~~L~~~----------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 611 NVRINVAKHLPKILKLLDES----------------VRDEEVLPLLETLSSDQELDVRYRAILAFG 660 (759)
T ss_pred hhhhhHHHHHHHHHhhcchH----------------HHHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 99999999999999876542 234445677777877888887777766544
No 71
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=1.8e-07 Score=90.90 Aligned_cols=248 Identities=18% Similarity=0.220 Sum_probs=192.6
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
+.+|.+++.|-| .--|+.|+..|.+++... .........-|++|.++++|+++. .+++..-+.+.++|..-++.+.
T Consensus 472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred HhcchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence 456666666655 345667888888887643 566677778899999999999999 7999999999999998788898
Q ss_pred HHHHhCCChHHHHHhhCC-C--ChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940 102 KVLIDHGAVPIFVKLLAS-P--SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~-~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l 178 (449)
..+++.++-.++++.|.. + +++-|..|+.+|+.++..-+..++.+.+.+.+...+..++.+..+-++..++-||..|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 889999889999998876 2 3688999999999999887777788888888888888885545677888899999999
Q ss_pred hcCCCCCChh-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC----hhHHHHH------------HHhCc---HHH
Q 039940 179 CKGKPQPPFD-QVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT----NDKIQAV------------IEAGV---CGP 238 (449)
Q Consensus 179 ~~~~~~~~~~-~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~------------~~~~~---~~~ 238 (449)
-.+.+..... ...++...|..++..+-++||..++.+|+.+..+. +++...+ .+.-+ ...
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 9887544443 34778889999999999999999999999988752 2222211 12111 136
Q ss_pred HHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH
Q 039940 239 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI 273 (449)
Q Consensus 239 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 273 (449)
++.++++..+-++.+..-++..+..+.......+.
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 77778888888999988899888877665554443
No 72
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=9.3e-07 Score=83.86 Aligned_cols=306 Identities=16% Similarity=0.162 Sum_probs=189.1
Q ss_pred hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940 18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT 97 (449)
Q Consensus 18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 97 (449)
+...+.+..+++-..++++.+|..|++.+..+ . -+... .-....+...+++.+ +-++..|+.+..++-..+
T Consensus 82 ~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l---~-v~~i~----ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~ 152 (734)
T KOG1061|consen 82 DLAILAVNTFLKDCEDPNPLIRALALRTMGCL---R-VDKIT----EYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID 152 (734)
T ss_pred hHHHhhhhhhhccCCCCCHHHHHHHhhceeeE---e-ehHHH----HHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC
Confidence 33456677777777788888887776655443 2 12111 223667888888888 899999999988887743
Q ss_pred hhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHH
Q 039940 98 SVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN 177 (449)
Q Consensus 98 ~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~ 177 (449)
.+.....|.++.|-.++.++++.+..+|+.+|..+....+...........+..++..+ +.-.-..-+.++..
T Consensus 153 ---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~ 225 (734)
T KOG1061|consen 153 ---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDC 225 (734)
T ss_pred ---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHH
Confidence 45567789999999999999999999999999999876654222222222333444444 22223334455666
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940 178 LCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257 (449)
Q Consensus 178 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 257 (449)
++.+.|... .....++..+...+.+.+..+...+...+.++..........+. ..+-+.++.++.... ++..-++.-
T Consensus 226 l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~-~K~~~pl~tlls~~~-e~qyvaLrN 302 (734)
T KOG1061|consen 226 LAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLF-KKVAPPLVTLLSSES-EIQYVALRN 302 (734)
T ss_pred HHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHH-HHhcccceeeecccc-hhhHHHHhh
Confidence 666665544 34456777777888888887777777777766654443222222 255666777766655 555555555
Q ss_pred HHHhhcCChhhHHH-------------------------HH-hcC---CHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 039940 258 VGNIVTGDDFQTQC-------------------------VI-NHG---AVPYLLALLINNHKKSIKKESCWTVSNITAGN 308 (449)
Q Consensus 258 l~~l~~~~~~~~~~-------------------------~~-~~~---~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~ 308 (449)
+.-+....+..... +. +.+ ++.-+...-..- |.+..+++.+++++++..-
T Consensus 303 i~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~ 381 (734)
T KOG1061|consen 303 INLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKA 381 (734)
T ss_pred HHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhh
Confidence 54444332221100 00 111 122222222333 6778889999999998643
Q ss_pred HHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 309 RKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 309 ~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
++. .+++..|++++..+-..+..++...+..+...
T Consensus 382 e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 382 EQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred hhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 221 46777888888766555666666677776665
No 73
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=3.5e-08 Score=89.01 Aligned_cols=282 Identities=15% Similarity=0.200 Sum_probs=190.7
Q ss_pred HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcC
Q 039940 59 DEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAH 138 (449)
Q Consensus 59 ~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 138 (449)
..+.+..+.+.|+++|..++ ..+...+...++|..-..+.-+..+...|+|..++.++.+.+..+|.+..|+++++...
T Consensus 425 TgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyn 503 (743)
T COG5369 425 TGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYN 503 (743)
T ss_pred hhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhc
Confidence 34556788999999999988 68888889999999887788889999999999999999999999999999999999865
Q ss_pred CCch-hhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCC----CChhh----hhchHHHHHHhhcCCCHHHH
Q 039940 139 SPGC-RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ----PPFDQ----VRPVLPALAQLIHLDDEEVL 209 (449)
Q Consensus 139 ~~~~-~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~----~~~~l~~l~~ll~~~~~~~~ 209 (449)
..+. +-.....-++..++.+. ++++-.++.+++..+.|++.+... ..... ..-....++..+...+|-..
T Consensus 504 cq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i 582 (743)
T COG5369 504 CQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI 582 (743)
T ss_pred CcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh
Confidence 5433 22344566788888888 788889999999999999885421 11111 12355667777777777777
Q ss_pred HHHHHHHHHcccCChhHHHHHHHh-CcHHHHHHhhC----C-------CCCcchhhHHHHHHHhhcCChhhHHHHHhcCC
Q 039940 210 RNVCWTLSNLSDGTNDKIQAVIEA-GVCGPLVELLG----H-------PSPSVLIPALRTVGNIVTGDDFQTQCVINHGA 277 (449)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~ll~----~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 277 (449)
...+..+.+++..++.....+.+. +.+..+...|. . ....+...-.....++....+.........
T Consensus 583 ~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~-- 660 (743)
T COG5369 583 LEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT-- 660 (743)
T ss_pred hhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC--
Confidence 777888888887766555544443 44444444332 1 011222222222333333222222211100
Q ss_pred HHHHHHHhcc---CCchhHHHHHHHHHHHHhc---CC------HHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHH
Q 039940 278 VPYLLALLIN---NHKKSIKKESCWTVSNITA---GN------RKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN 345 (449)
Q Consensus 278 l~~L~~ll~~---~~~~~v~~~a~~~l~nl~~---~~------~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~ 345 (449)
|.+- .++. ..+.+.-.+..|.+.|+.. ++ .+.++.+.+.|+-+.+......+++.||+.+-.+|.+
T Consensus 661 -p~~D-~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~ 738 (743)
T COG5369 661 -PHLD-NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALEN 738 (743)
T ss_pred -CCcc-ccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 1111 1121 1145577788888888764 22 2566677788888888888888899999999999988
Q ss_pred h
Q 039940 346 A 346 (449)
Q Consensus 346 l 346 (449)
+
T Consensus 739 l 739 (743)
T COG5369 739 L 739 (743)
T ss_pred h
Confidence 6
No 74
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.80 E-value=2.4e-05 Score=76.00 Aligned_cols=356 Identities=16% Similarity=0.201 Sum_probs=202.6
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
-.+++.+...+++.....+...+.++-.+............. ..++..+-.++..++ -.+...|+.++..++...+..
T Consensus 650 ~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesd-lhvt~~a~~~L~tl~~~~ps~ 727 (1233)
T KOG1824|consen 650 TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLISESD-LHVTQLAVAFLTTLAIIQPSS 727 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhhhHHH-HHHHHHHHHHHHHHHhcccHH
Confidence 456778888888777777777777776665433111111222 223445555666666 688888999999888754443
Q ss_pred hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHH----hcCC-Cch--hhhH---------------------------
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNI----VAHS-PGC--RNLV--------------------------- 146 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l----~~~~-~~~--~~~~--------------------------- 146 (449)
. .-....+++.++.+++++- ++-.++.++-++ .... +.. ...+
T Consensus 728 l-~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cv 804 (1233)
T KOG1824|consen 728 L-LKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCV 804 (1233)
T ss_pred H-HHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHH
Confidence 3 3334456777777776532 111111111111 0000 000 0000
Q ss_pred ----h-----hcCCHHHHHHHHc-ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHH
Q 039940 147 ----L-----HEEALIPLLAQLN-EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTL 216 (449)
Q Consensus 147 ----~-----~~~~i~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l 216 (449)
. .......++.-+. ...+..++..++..++.+-+..+. ....+.-..+++.+++++.+++.+|..+|
T Consensus 805 A~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~---s~~~e~~~~iieaf~sp~edvksAAs~AL 881 (1233)
T KOG1824|consen 805 AALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL---SPQNELKDTIIEAFNSPSEDVKSAASYAL 881 (1233)
T ss_pred HHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC---CcchhhHHHHHHHcCCChHHHHHHHHHHh
Confidence 0 0001112222221 123445566666666666555422 22234555788999999999999999999
Q ss_pred HHcccCChh-HHHHHHHh----------------------------CcHHHHHHhh----CCCCCcchhhHHHHHHHhhc
Q 039940 217 SNLSDGTND-KIQAVIEA----------------------------GVCGPLVELL----GHPSPSVLIPALRTVGNIVT 263 (449)
Q Consensus 217 ~~l~~~~~~-~~~~~~~~----------------------------~~~~~L~~ll----~~~~~~v~~~a~~~l~~l~~ 263 (449)
++++.++-+ ....+.+. ..++.+..+| ...+...|.-...|||.++.
T Consensus 882 Gsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l 961 (1233)
T KOG1824|consen 882 GSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVL 961 (1233)
T ss_pred hhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHh
Confidence 999985432 22111110 0111111111 12233455556666666665
Q ss_pred CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHH
Q 039940 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAI 343 (449)
Q Consensus 264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL 343 (449)
.+++ ..+|.|-..+.++ .+..|..+..++.-.....+..++.+.+ ..+..++.++++++.+||+.|..++
T Consensus 962 ~epe--------sLlpkL~~~~~S~-a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen 962 IEPE--------SLLPKLKLLLRSE-ASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred CChH--------HHHHHHHHHhcCC-CcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHH
Confidence 5443 3677888888888 8888888777776555544454544444 4677788899999999999999999
Q ss_pred HHhhccCCHHHHHHHHHcCChHHH----------Hhhc-----cC---CCHHHHHHHHHHHHHHHHhhhhh
Q 039940 344 SNATKAGTQEQIKYLVREGCIKPL----------CDLL-----LC---ADPEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 344 ~~l~~~~~~~~~~~l~~~~~~~~L----------~~ll-----~~---~~~~~~~~~~~~l~~l~~~~~~~ 396 (449)
...+.+ .+..++.+... +++.| ++-. ++ +.-++|+.|.++++.+++.+...
T Consensus 1032 nSaahN-KpslIrDllpe-LLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~ 1100 (1233)
T KOG1824|consen 1032 NSAAHN-KPSLIRDLLPE-LLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDR 1100 (1233)
T ss_pred HHHHcc-CHhHHHHHHHH-HHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhh
Confidence 998876 45444433321 22222 2221 11 22368999999999999988764
No 75
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=8.5e-06 Score=69.03 Aligned_cols=271 Identities=14% Similarity=0.146 Sum_probs=179.3
Q ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940 153 IPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIE 232 (449)
Q Consensus 153 ~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 232 (449)
..++.++ .+.++.++..|+.-+..++......-.......++.+.+++...++ ...+..++.|++....- .+.+++
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l-~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEEL-RKKLLQ 81 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHH-HHHHHH
Confidence 3567777 8889999999999999998883222222335677888888887766 77888999999976543 344555
Q ss_pred hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH--h----cCCHHHHHHHhccCCchhH-HHHHHHHHHHHh
Q 039940 233 AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI--N----HGAVPYLLALLINNHKKSI-KKESCWTVSNIT 305 (449)
Q Consensus 233 ~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~----~~~l~~L~~ll~~~~~~~v-~~~a~~~l~nl~ 305 (449)
. ++..++..+.++........|..++|++...+....... . .+.+........++.+... -...+..++|++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 4 888899999888888999999999999987655433322 2 4556666666655533212 234567778886
Q ss_pred cCCHHHHHHHHHCCChH--HHHHHhhcCchhHHH-HHHHHHHHhhccCCHHHHHHHHHc--CChHHHH------------
Q 039940 306 AGNRKQIQAVIDAGLIV--PLVNLLQDAEFDIKK-EAAWAISNATKAGTQEQIKYLVRE--GCIKPLC------------ 368 (449)
Q Consensus 306 ~~~~~~~~~l~~~~~~~--~L~~ll~~~~~~v~~-~a~~aL~~l~~~~~~~~~~~l~~~--~~~~~L~------------ 368 (449)
. .+..+..+.+...++ .+..+ ..++..+|+ ..+.+|.|++.. ......+... ++++.|.
T Consensus 161 ~-~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd--~~~h~~lL~e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 161 Q-FEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFD--AKLHEVLLDESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred h-hhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhcc--chhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence 5 345555665544322 23322 334445544 456788887663 2333333321 1122111
Q ss_pred ---------hhcc-----CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH-hcCCCHHH
Q 039940 369 ---------DLLL-----CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL-KSHGNNGI 433 (449)
Q Consensus 369 ---------~ll~-----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~i 433 (449)
+++. .+|+.++...+++|..++.-... .+.+++-|+...+..+ ...+++++
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G--------------Re~lR~kgvYpilRElhk~e~ded~ 302 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG--------------REVLRSKGVYPILRELHKWEEDEDI 302 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh--------------HHHHHhcCchHHHHHHhcCCCcHHH
Confidence 2332 35788999999999988865443 7889999999999999 55688999
Q ss_pred HHHHHHHHHHhcC
Q 039940 434 REKAVTILETYWL 446 (449)
Q Consensus 434 ~~~a~~~i~~~~~ 446 (449)
.+.+.++.+-...
T Consensus 303 ~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 303 REACEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888876554
No 76
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=3.2e-06 Score=80.32 Aligned_cols=303 Identities=16% Similarity=0.184 Sum_probs=203.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 146 (449)
++.+++=..+++ +.++..|++.++.+-. +.... .....+...+++.++.+|..+..+..++-..++ +.+
T Consensus 88 vnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~ 156 (734)
T KOG1061|consen 88 VNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLV 156 (734)
T ss_pred hhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhc
Confidence 444444445555 5666666655554443 11111 235677788888999999999988888855543 356
Q ss_pred hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChh
Q 039940 147 LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ-PPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND 225 (449)
Q Consensus 147 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 225 (449)
...|.+..+-.++ .+.++.|..+|+.++..+....+. .........+..++..+..-+..-+..++.++.+-...++.
T Consensus 157 ~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ 235 (734)
T KOG1061|consen 157 EDSGLVDALKDLL-SDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSR 235 (734)
T ss_pred cccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCch
Confidence 6788888888888 688999999999999999988764 34444466666777777666777777777777776655442
Q ss_pred HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 039940 226 KIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT 305 (449)
Q Consensus 226 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 305 (449)
... .+++.+...+.+.++.+...+...+.++........ ..+-..+-+.++.++.+. . +++.-|..-+.-+.
T Consensus 236 ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~-~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil 307 (734)
T KOG1061|consen 236 EAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN-ELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLIL 307 (734)
T ss_pred hHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH-HHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHH
Confidence 222 456788888999999999999999988876544422 233345667777777766 3 55555544444333
Q ss_pred cCCHHHHH-------------------------HHHH-CC---ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHH
Q 039940 306 AGNRKQIQ-------------------------AVID-AG---LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIK 356 (449)
Q Consensus 306 ~~~~~~~~-------------------------~l~~-~~---~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 356 (449)
...|.... .+.. .+ ++..+.......+.+....+.+|+++++....+.
T Consensus 308 ~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~--- 384 (734)
T KOG1061|consen 308 QKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS--- 384 (734)
T ss_pred HhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---
Confidence 33332111 0111 11 2333333334458889999999999998853221
Q ss_pred HHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940 357 YLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 357 ~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 396 (449)
++.+..|+++++.+-..+.+.++..++.+++..++.
T Consensus 385 ----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 385 ----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred ----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 568999999999888888888888999999888775
No 77
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.8e-05 Score=72.38 Aligned_cols=313 Identities=16% Similarity=0.196 Sum_probs=204.3
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
...++.+++.+.-+.+++|.....+|..+.......... .+.+.+.+++..++ ..-+..+.+.+..+..+. .
T Consensus 95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~-----~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~ 166 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGE-----YVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--G 166 (569)
T ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHH-----HHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--H
Confidence 356678888888888999999888888775443222222 34677888899777 677888888888888743 4
Q ss_pred hHHHHhCCChHHHHHhhCCCChHH-HHHHHHHHHHHhcC-CCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDV-REQAVWALGNIVAH-SPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~-~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l 178 (449)
...+.+.+++..+.....+..... ++.++.+....++. .+.....+ ...++.++... .+..+.++..+..+...+
T Consensus 167 i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi--v~~lp~il~~~-~d~~~~Vr~Aa~~a~kai 243 (569)
T KOG1242|consen 167 IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI--VPILPSILTNF-GDKINKVREAAVEAAKAI 243 (569)
T ss_pred HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH--HhhHHHHHHHh-hccchhhhHHHHHHHHHH
Confidence 455666788999999988754333 33333333333221 12221122 12344555555 566778888877777666
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 179 CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 179 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
.+.-+.. .+...+|.++.-+.......+..++..++.++...+.+... .-..++|.+...|.+.+++++..+..++
T Consensus 244 ~~~~~~~---aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~-~lp~iiP~lsevl~DT~~evr~a~~~~l 319 (569)
T KOG1242|consen 244 MRCLSAY---AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL-CLPDLIPVLSEVLWDTKPEVRKAGIETL 319 (569)
T ss_pred HHhcCcc---hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH-HHhHhhHHHHHHHccCCHHHHHHHHHHH
Confidence 5543221 22344555555555557788889999999998888776664 4448999999999999999999999999
Q ss_pred HHhhcCChh-hHHHHH------------------------------hcCCHHHHHHHhccC---CchhHHHHHHHHHHHH
Q 039940 259 GNIVTGDDF-QTQCVI------------------------------NHGAVPYLLALLINN---HKKSIKKESCWTVSNI 304 (449)
Q Consensus 259 ~~l~~~~~~-~~~~~~------------------------------~~~~l~~L~~ll~~~---~~~~v~~~a~~~l~nl 304 (449)
.+++..-+. .++.++ +...+..++.+++.+ .+..+++.++..+.|+
T Consensus 320 ~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm 399 (569)
T KOG1242|consen 320 LKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNM 399 (569)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence 888753211 111111 111233334444322 1456788899999999
Q ss_pred hc--CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 305 TA--GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 305 ~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
+. .++.....++. .++|.|-..+.+..|++|..+..+|+.+...
T Consensus 400 ~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 400 CKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred HHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 87 34555444443 3677777777777899999999999988875
No 78
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.76 E-value=6e-07 Score=80.01 Aligned_cols=269 Identities=14% Similarity=0.067 Sum_probs=183.1
Q ss_pred hhcHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940 21 LEILPAMVAGVWSDDN--SMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 98 (449)
.|++..+++++.+++. +++.+|.+.|.++.. .++.+.+...| +..++.+-+.....+.+...+.+|.++..+++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~---aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV---AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh---hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 4778899999998774 569999999999876 46667776666 55555555555447899999999999999999
Q ss_pred hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHH
Q 039940 99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN 177 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~ 177 (449)
+....++..|+++.++--....++.+..+|.-+|+|++-+. ...+..+.+..+-..++.+. .+.|+-.+.+||.+...
T Consensus 255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~v 333 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAV 333 (832)
T ss_pred HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhh
Confidence 99999999999999999888888999999999999998433 34555565666666666555 56678889999999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940 178 LCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257 (449)
Q Consensus 178 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 257 (449)
++............+.+..+-.++.+-|+.-...- -...+.+. ..+-++.|+.+|++...+.+.-+.+-
T Consensus 334 lat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD---~hd~aQG~--------~~d~LqRLvPlLdS~R~EAq~i~AF~ 402 (832)
T KOG3678|consen 334 LATNKEVEREVRKSGTLALVEPLVASLDPGRFARD---AHDYAQGR--------GPDDLQRLVPLLDSNRLEAQCIGAFY 402 (832)
T ss_pred hhhhhhhhHHHhhccchhhhhhhhhccCcchhhhh---hhhhhccC--------ChHHHHHhhhhhhcchhhhhhhHHHH
Confidence 98887444444445666666666665555322210 00111111 11346788888886655444443333
Q ss_pred HHHhhcC--ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 258 VGNIVTG--DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 258 l~~l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
+..=+.. -....+.+.+-|.++.|-++.+++ +..-.+.|-.+|.-+..
T Consensus 403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcc
Confidence 3222111 112233455778999999999877 66555555556655543
No 79
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=6.4e-06 Score=69.75 Aligned_cols=271 Identities=15% Similarity=0.183 Sum_probs=175.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHH--HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEV--IQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 24 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
+..++.++++.+|.++..|...+..+... ..+.+ .+...++.+.+++.... + ...|+.++.|++. .+..+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence 45788999999999999999988888543 11211 23345778888988877 4 6789999999998 67788
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhc-----CCHHHHHHHHcccc-c-HHHHHHHHHH
Q 039940 102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHE-----EALIPLLAQLNEHA-R-LSMLRIGTWT 174 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~-~-~~~~~~a~~~ 174 (449)
+.+++. ++..++..+.++...+....+..|.|++++........... .++..++..+.+.. + ..-..+.+.+
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 888776 78888888888877788888999999998876655444321 23334444332322 2 1335567788
Q ss_pred HHHhhcCCCCCChhhhhchH--HHHHHhhcCCCHHHHH-HHHHHHHHcccCChhHHHHHHHh--CcHHHHHH-h------
Q 039940 175 LSNLCKGKPQPPFDQVRPVL--PALAQLIHLDDEEVLR-NVCWTLSNLSDGTNDKIQAVIEA--GVCGPLVE-L------ 242 (449)
Q Consensus 175 l~~l~~~~~~~~~~~~~~~l--~~l~~ll~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~--~~~~~L~~-l------ 242 (449)
+.|+++....+........+ +.+..+-. .+..+|+ .++.+|.|.|........ ++.. .+++.++- +
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCcccc
Confidence 88888876444443333322 23333333 5666655 577888888866543322 2221 22332222 1
Q ss_pred --------------hC-----CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940 243 --------------LG-----HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN 303 (449)
Q Consensus 243 --------------l~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n 303 (449)
+. .+++.++..-+.+|..+|.- ...++.+...|+.+.+-.+=+...+++++...-.....
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 11 24567899999999888875 55666777777777777666655466666655555554
Q ss_pred Hhc
Q 039940 304 ITA 306 (449)
Q Consensus 304 l~~ 306 (449)
+..
T Consensus 313 Lv~ 315 (353)
T KOG2973|consen 313 LVR 315 (353)
T ss_pred HHh
Confidence 544
No 80
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.4e-07 Score=85.29 Aligned_cols=311 Identities=13% Similarity=0.093 Sum_probs=195.8
Q ss_pred HHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCC
Q 039940 126 EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHLD 204 (449)
Q Consensus 126 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~ 204 (449)
.+++.+|..+++.-...|.-+.+..+.+.+++.| .+++..+...+...+.|+.-.. +-.......+++..++.++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 3444556666655555666677778888999999 6666666666777777776655 3344555689999999999999
Q ss_pred CHHHHHHHHHHHHHcccCChhHHH-HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh---hHHHHHhc----C
Q 039940 205 DEEVLRNVCWTLSNLSDGTNDKIQ-AVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF---QTQCVINH----G 276 (449)
Q Consensus 205 ~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~----~ 276 (449)
|..++.+..|.+.++..+..+..+ .....-++..++.+..+++..++...+..+.|+.+.... ....+++. -
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 999999999999999877554322 244446779999999999999999999999999874332 22222221 2
Q ss_pred CHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHhhcC-----------chhHHHHHHHHHH
Q 039940 277 AVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID-AGLIVPLVNLLQDA-----------EFDIKKEAAWAIS 344 (449)
Q Consensus 277 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~-----------~~~v~~~a~~aL~ 344 (449)
..+.+++.+... +|-.-...++.|.+++..+......+.+ ..++..+...+... ...+-..-..+..
T Consensus 566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v 644 (743)
T COG5369 566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV 644 (743)
T ss_pred HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence 566777777777 7777777799999998865554444443 34444444444221 1122222222333
Q ss_pred HhhccCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHH
Q 039940 345 NATKAGTQEQIKYLVR-EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIE 423 (449)
Q Consensus 345 ~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 423 (449)
++..+. +..++... ..-....-+--.+++.++-....|.+.++....+..+-. ....+-++.+...|.-+-++
T Consensus 645 ~l~e~~--d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt----ratveR~~iL~~~G~~e~l~ 718 (743)
T COG5369 645 NLSENS--DKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT----RATVERIQILCANGIREWLV 718 (743)
T ss_pred cccccc--cccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc----hhhHHHHHHHHHccHHHHHH
Confidence 333321 11111110 000111111112235566777777777754333222110 11223577888899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHh
Q 039940 424 DLKSHGNNGIREKAVTILETY 444 (449)
Q Consensus 424 ~l~~~~~~~i~~~a~~~i~~~ 444 (449)
.++.++++.+++++-..++..
T Consensus 719 k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 719 KIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHhccCcHHHHHHHHHHHHhh
Confidence 999999999999999988753
No 81
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=9.7e-06 Score=76.28 Aligned_cols=216 Identities=16% Similarity=0.166 Sum_probs=164.5
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH
Q 039940 152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI 231 (449)
Q Consensus 152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 231 (449)
-+-++.+| .++-+-++..|...+..++...| .....++|.+..-|.++|+.++..+...++.|++.+|.+.-
T Consensus 146 a~Dv~tLL-~sskpYvRKkAIl~lykvFLkYP----eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--- 217 (877)
T KOG1059|consen 146 ADDVFTLL-NSSKPYVRKKAILLLYKVFLKYP----EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--- 217 (877)
T ss_pred HHHHHHHH-hcCchHHHHHHHHHHHHHHHhhh----HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence 34677888 78889999999999999887664 44568899999999999999999999999999998886433
Q ss_pred HhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHH--HHhcC-
Q 039940 232 EAGVCGPLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVS--NITAG- 307 (449)
Q Consensus 232 ~~~~~~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~--nl~~~- 307 (449)
.+.|.+..+|.+ ++.-+....+..+++++-..+... .+++++|..++.+..-..+..++..++. ++..+
T Consensus 218 --~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 218 --QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred --cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence 466888888876 445578888999999987655433 4688999999988744556666554443 33333
Q ss_pred -C-HHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHH
Q 039940 308 -N-RKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKG 385 (449)
Q Consensus 308 -~-~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~ 385 (449)
+ ...++. .+..|-.++.+.|+.++--++-|++.++.. .+..++. --+.++++|.+.|+.++..|+..
T Consensus 291 ~d~~asiqL-----CvqKLr~fiedsDqNLKYlgLlam~KI~kt-Hp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdL 359 (877)
T KOG1059|consen 291 SDHSASIQL-----CVQKLRIFIEDSDQNLKYLGLLAMSKILKT-HPKAVQA-----HKDLILRCLDDKDESIRLRALDL 359 (877)
T ss_pred CCcHHHHHH-----HHHHHhhhhhcCCccHHHHHHHHHHHHhhh-CHHHHHH-----hHHHHHHHhccCCchhHHHHHHH
Confidence 1 122222 456777888899999999999999999876 3444443 35678899999999999999999
Q ss_pred HHHHHHhh
Q 039940 386 LENILKVG 393 (449)
Q Consensus 386 l~~l~~~~ 393 (449)
++-+....
T Consensus 360 l~gmVskk 367 (877)
T KOG1059|consen 360 LYGMVSKK 367 (877)
T ss_pred HHHHhhhh
Confidence 99888654
No 82
>PF05536 Neurochondrin: Neurochondrin
Probab=98.69 E-value=6.5e-05 Score=72.19 Aligned_cols=383 Identities=16% Similarity=0.093 Sum_probs=226.4
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCc--HHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHH
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLP--IDEVIQAGIVPRFVEFLLRED------YPRLQFEAAWVLTN 92 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~ll~~~~------~~~~~~~a~~~L~~ 92 (449)
...+...+.+|++.+.+-++.++-.+.+++....... .+.+.+.=+.+.+-++|.++. ....+.-|+.+|..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3567888999999888888999999999987542111 234667666788888888722 25677889999999
Q ss_pred hcCCChhhhHHHHhCCChHHHHHhhCCCCh-HHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHH
Q 039940 93 IASGTSVNTKVLIDHGAVPIFVKLLASPSD-DVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIG 171 (449)
Q Consensus 93 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a 171 (449)
+|. .++....---.+-||.|++.+.+.+. .+...|+.+|..++ ..+..+..+.+.|.++.+...+.+ .+...+.+
T Consensus 84 f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A 159 (543)
T PF05536_consen 84 FCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIA 159 (543)
T ss_pred HcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence 998 55544222223569999999987766 99999999999998 566778888899999999999844 55667888
Q ss_pred HHHHHHhhcCCCCC----ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH-HHHH----HHhCcHHHHHHh
Q 039940 172 TWTLSNLCKGKPQP----PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK-IQAV----IEAGVCGPLVEL 242 (449)
Q Consensus 172 ~~~l~~l~~~~~~~----~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~----~~~~~~~~L~~l 242 (449)
+.++.+++...... .......+++.+...+.......+-..+..+..+....+.. .... .-..+...+..+
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 88888887765321 12222455666666666666667777888888877655311 0111 111344455555
Q ss_pred hCCC-CCcchhhHHHHHHHhhcCChhhHHHHHhc-----CCHHHHHH---------------HhccCCch----------
Q 039940 243 LGHP-SPSVLIPALRTVGNIVTGDDFQTQCVINH-----GAVPYLLA---------------LLINNHKK---------- 291 (449)
Q Consensus 243 l~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----~~l~~L~~---------------ll~~~~~~---------- 291 (449)
+++. .+.-|..++...+.+....... ..+.+. .++-.+++ ..+.+...
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~~~G~~-wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf 318 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLDLLGPE-WLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCF 318 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhChH-hhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHH
Confidence 6553 4455666666666664321100 000011 11111111 11111001
Q ss_pred hHHHHHHHHHHHHhc-----CCHHHHHHHHH--CCChHHHHHHhhcC------chhHHHHHHHHHHHhhccCCHHHHHHH
Q 039940 292 SIKKESCWTVSNITA-----GNRKQIQAVID--AGLIVPLVNLLQDA------EFDIKKEAAWAISNATKAGTQEQIKYL 358 (449)
Q Consensus 292 ~v~~~a~~~l~nl~~-----~~~~~~~~l~~--~~~~~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l 358 (449)
.+.+.....+.+-.. -.++....+.. .+.+...+.+|.+- ++.....+.++|+......+...++.+
T Consensus 319 ~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v 398 (543)
T PF05536_consen 319 SILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV 398 (543)
T ss_pred HHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 111112222222111 12333333332 23455555555432 333666778888877775444444544
Q ss_pred HHcCChHHHHhhccCCCH----------HHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHH
Q 039940 359 VREGCIKPLCDLLLCADP----------EIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIED 424 (449)
Q Consensus 359 ~~~~~~~~L~~ll~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 424 (449)
.+.++.++.+.+.... +.+...+=+|..+....+ -++.+...||.+.+.+
T Consensus 399 --~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~--------------gr~~l~~~~g~~~l~~ 458 (543)
T PF05536_consen 399 --YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEE--------------GRKILLSNGGWKLLCD 458 (543)
T ss_pred --HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHH--------------HHHHHHhCCcHHHHHH
Confidence 3588888888765322 345556666666664333 3566666777555543
No 83
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.68 E-value=1.2e-05 Score=74.05 Aligned_cols=243 Identities=16% Similarity=0.036 Sum_probs=166.3
Q ss_pred hcHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 22 EILPAMVAGVW-SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 22 ~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
.+++.++..|. .++..+...++..+... . .. ..+..|++.+.+.+ +.++..++..|+.+-. +
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~--~-- 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ---E-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG--R-- 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc---C-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc--h--
Confidence 34667777774 45666766655554322 1 11 12788888898888 7899999988886554 1
Q ss_pred hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
+..+.|+.++.+.++.++..++.+++..- ....+.+...+ ++.++.++..++.++..+-.
T Consensus 117 -------~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 117 -------QAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAAL-THEDALVRAAALRALGELPR 176 (410)
T ss_pred -------HHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhcc
Confidence 45688888898888999988887777621 12344677777 68889999999999988776
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 039940 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260 (449)
Q Consensus 181 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~ 260 (449)
. ..++.|...+.+.++.++..+++++..+-. + .....+..+...........+...+..
T Consensus 177 ~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal 235 (410)
T TIGR02270 177 R----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAV 235 (410)
T ss_pred c----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHh
Confidence 5 456677788888999999999998876642 2 123344443344444444343333333
Q ss_pred hhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHH
Q 039940 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAA 340 (449)
Q Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~ 340 (449)
. +.+ ..++.|..+++++ .++..++++++.+- .+ ..++.|+..+.+. .++..|.
T Consensus 236 ~--~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg--~p---------~av~~L~~~l~d~--~~aR~A~ 288 (410)
T TIGR02270 236 A--GGP---------DAQAWLRELLQAA---ATRREALRAVGLVG--DV---------EAAPWCLEAMREP--PWARLAG 288 (410)
T ss_pred C--Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcC--Cc---------chHHHHHHHhcCc--HHHHHHH
Confidence 2 111 4677888888866 38999999999773 23 2677788777644 4999999
Q ss_pred HHHHHhhcc
Q 039940 341 WAISNATKA 349 (449)
Q Consensus 341 ~aL~~l~~~ 349 (449)
.++..|+--
T Consensus 289 eA~~~ItG~ 297 (410)
T TIGR02270 289 EAFSLITGM 297 (410)
T ss_pred HHHHHhhCC
Confidence 999999864
No 84
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.66 E-value=1.3e-05 Score=74.19 Aligned_cols=337 Identities=15% Similarity=0.127 Sum_probs=212.8
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh--hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh
Q 039940 66 IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV--NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143 (449)
Q Consensus 66 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 143 (449)
++...+.+|++.. ++++..|+...+.++.--.. ....+...| ..|.+.+....+++.-..+.++..+..... ++
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~ 680 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR 680 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence 3556677888888 89999999887776641110 122333344 457777888888888777777776643211 11
Q ss_pred hhH-hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhh-hchHHHHHHhhcCCCHHHHHHHHHHHHHccc
Q 039940 144 NLV-LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQV-RPVLPALAQLIHLDDEEVLRNVCWTLSNLSD 221 (449)
Q Consensus 144 ~~~-~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~ 221 (449)
.+- --.|.+|.+...| .+....+..+....+..+|...|....... -.+---|+.+|.+.+.+++++|..+++.+++
T Consensus 681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 000 1256788888888 677788999999999999998865432221 2233346777788899999999999998875
Q ss_pred CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHH
Q 039940 222 GTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTV 301 (449)
Q Consensus 222 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l 301 (449)
.-. -.+++..|+.-|+..+...|....-+++..+..+. ...++|.|+.=-..+ +..|+.-...++
T Consensus 760 aiG-------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam 824 (975)
T COG5181 760 AIG-------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAM 824 (975)
T ss_pred hcC-------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence 422 22456667666666655555444444444433221 123667777666667 777888888777
Q ss_pred HHHhcCC-HHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHH-HHHHHHHcCChHHHHhhccCCCHHHH
Q 039940 302 SNITAGN-RKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQE-QIKYLVREGCIKPLCDLLLCADPEIV 379 (449)
Q Consensus 302 ~nl~~~~-~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~ 379 (449)
+-+.... ....+++. -+.|.|-+.+.+.|+.-|..|...+.+++.++... ....++. ++..|..-+-++.|.+.
T Consensus 825 ~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi 900 (975)
T COG5181 825 CFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVI 900 (975)
T ss_pred HHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHH
Confidence 7765421 12222332 37788888999999999999999999999874211 1111111 23333333445678887
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940 380 TVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL 446 (449)
Q Consensus 380 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~ 446 (449)
....+++..+...-... . .+..+++=.-|++..+++..-...+.+|-
T Consensus 901 ~~~~Eg~e~~~~~lg~g---------------~-----~m~Yv~qGLFHPs~~VRk~ywtvyn~myv 947 (975)
T COG5181 901 QSFDEGMESFATVLGSG---------------A-----MMKYVQQGLFHPSSTVRKRYWTVYNIMYV 947 (975)
T ss_pred HHHHHHHHHHHHHhccH---------------H-----HHHHHHHhccCchHHHHHHHHHHHhhhhh
Confidence 77777776655433221 1 24455666778888888888777776553
No 85
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.66 E-value=9e-07 Score=78.93 Aligned_cols=186 Identities=16% Similarity=0.166 Sum_probs=148.4
Q ss_pred HHHHHhCcHHHHHHhhCCCCCc--chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 039940 228 QAVIEAGVCGPLVELLGHPSPS--VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT 305 (449)
Q Consensus 228 ~~~~~~~~~~~L~~ll~~~~~~--v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 305 (449)
+.+...|+++.|+.++..++.+ ++.++...|..+.. .++.+.+...| +..++.+.+..+.++.....+..|.++.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 3345558999999999998755 58999999988765 33444455444 6666666655546788899999999999
Q ss_pred cCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHH
Q 039940 306 AGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKG 385 (449)
Q Consensus 306 ~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~ 385 (449)
.++++....++..|++..++-.....+|.+...++.+|+|++.++..+..+.+++...-+.|.-+-.+.|+-++..++-+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 99999999999999999999989988999999999999999999999999999999999999999988988889888888
Q ss_pred HHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCC
Q 039940 386 LENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGN 430 (449)
Q Consensus 386 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 430 (449)
...+....+ +-...+.+|-+..++.+..+-+
T Consensus 331 V~vlat~KE--------------~E~~VrkS~TlaLVEPlva~~D 361 (832)
T KOG3678|consen 331 VAVLATNKE--------------VEREVRKSGTLALVEPLVASLD 361 (832)
T ss_pred Hhhhhhhhh--------------hhHHHhhccchhhhhhhhhccC
Confidence 888876554 3444556666666665544433
No 86
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.65 E-value=1.6e-05 Score=72.35 Aligned_cols=328 Identities=15% Similarity=0.074 Sum_probs=202.4
Q ss_pred CCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccc-ccHHHHHHHHH
Q 039940 95 SGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH-ARLSMLRIGTW 173 (449)
Q Consensus 95 ~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~ 173 (449)
...++-+..+.-....+.+..++-+++.++|..+.++++.+..+... -..+.+.+.--.++.-+..+ ....=+++|+.
T Consensus 12 ~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALk 90 (371)
T PF14664_consen 12 KRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALK 90 (371)
T ss_pred HhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHH
Confidence 33444444433333445555455455599999999999999877644 34444555544555555443 34455789999
Q ss_pred HHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhh
Q 039940 174 TLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIP 253 (449)
Q Consensus 174 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~ 253 (449)
.+..+..... .......+++..++.+..+.++..+..++.++..++-.+++ .+...|++..+...+.++..++...
T Consensus 91 liR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~ 166 (371)
T PF14664_consen 91 LIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISES 166 (371)
T ss_pred HHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHH
Confidence 9988887742 22233468889999999999999999999999999988874 4678899999999998866667778
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHH-H-CCChHH
Q 039940 254 ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN------HKK--SIKKESCWTVSNITAGNRKQIQAVI-D-AGLIVP 323 (449)
Q Consensus 254 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~------~~~--~v~~~a~~~l~nl~~~~~~~~~~l~-~-~~~~~~ 323 (449)
.+.++..+... +..++.+...--++.++.-+.+. .+. +.-..+..++..+...=+-.. .+. + ...+..
T Consensus 167 l~~~lL~lLd~-p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl-~l~~~~~~~lks 244 (371)
T PF14664_consen 167 LLDTLLYLLDS-PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL-YLSMNDFRGLKS 244 (371)
T ss_pred HHHHHHHHhCC-cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee-eeecCCchHHHH
Confidence 88888888765 44444444433455555444332 022 233445555555544211111 111 1 147888
Q ss_pred HHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHH------HcCCh---HHHHhhccCCC---HHHHHHHHHHHHHHHH
Q 039940 324 LVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLV------REGCI---KPLCDLLLCAD---PEIVTVCLKGLENILK 391 (449)
Q Consensus 324 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~------~~~~~---~~L~~ll~~~~---~~~~~~~~~~l~~l~~ 391 (449)
|++.|..+++++|+.....+..+..-..+.....+. ..|-. ..+..-..+.. +.....-...+.++..
T Consensus 245 Lv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a 324 (371)
T PF14664_consen 245 LVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA 324 (371)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH
Confidence 999999999999999999999988764332222111 11111 00110000000 0000011112222211
Q ss_pred hhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCC-CHHHHHHHHHHHHHhc
Q 039940 392 VGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHG-NNGIREKAVTILETYW 445 (449)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~i~~~a~~~i~~~~ 445 (449)
-....|.++|.++.|..+..+. ++.+..+|..++.+++
T Consensus 325 ----------------Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 325 ----------------LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred ----------------HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 1356778999999999996665 8999999999988765
No 87
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00021 Score=68.37 Aligned_cols=256 Identities=17% Similarity=0.182 Sum_probs=149.5
Q ss_pred hhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCH
Q 039940 73 FLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEAL 152 (449)
Q Consensus 73 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 152 (449)
...++. +.++..|+.++-++-.-+++....+ +..+-.+|.+.++.+.-.|+.++-.+|-+. -+.+ .+-.
T Consensus 151 ~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--Hkny 219 (968)
T KOG1060|consen 151 AVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKNY 219 (968)
T ss_pred HhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHHH
Confidence 344555 6777777777777777666655533 456667777777888888888877776432 2222 2334
Q ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhcCC-CCC-------------------------C---hhhhhchHHHHHHhhcC
Q 039940 153 IPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQP-------------------------P---FDQVRPVLPALAQLIHL 203 (449)
Q Consensus 153 ~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~-------------------------~---~~~~~~~l~~l~~ll~~ 203 (449)
..+++++ .+-++==+......|..-++.. +.+ . ..-..-++.-.-.++.+
T Consensus 220 rklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S 298 (968)
T KOG1060|consen 220 RKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQS 298 (968)
T ss_pred HHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhc
Confidence 4555555 2222111222233333333322 111 0 00112344555567778
Q ss_pred CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHH------------
Q 039940 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC------------ 271 (449)
Q Consensus 204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~------------ 271 (449)
.++.+...++.+...++.... .. .+++.|+.+|.. +.+++.-.+..+..++...+.....
T Consensus 299 ~n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp 370 (968)
T KOG1060|consen 299 RNPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDP 370 (968)
T ss_pred CCcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCH
Confidence 899999999999999885432 12 456788887754 4456666666666666443322111
Q ss_pred ----HH---------hc----CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchh
Q 039940 272 ----VI---------NH----GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFD 334 (449)
Q Consensus 272 ----~~---------~~----~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~ 334 (449)
++ .. .+++-+-..+++. +..+...|..+|+.++...-. +...++..|+.++.+++..
T Consensus 371 ~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~ 444 (968)
T KOG1060|consen 371 TQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDEL 444 (968)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccch
Confidence 11 11 1233334444555 556777788888888753322 2234677888899998889
Q ss_pred HHHHHHHHHHHhhccCCHHH
Q 039940 335 IKKEAAWAISNATKAGTQEQ 354 (449)
Q Consensus 335 v~~~a~~aL~~l~~~~~~~~ 354 (449)
|..++...+..+......++
T Consensus 445 Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 445 VVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred hHHHHHHHHHHHHhhChHHH
Confidence 99999999998888744444
No 88
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00027 Score=67.67 Aligned_cols=364 Identities=13% Similarity=0.123 Sum_probs=221.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-HhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHH
Q 039940 25 PAMVAGVWSDDNSMQLEAATQFRR-LLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKV 103 (449)
Q Consensus 25 ~~l~~~l~s~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 103 (449)
..|.++|.|........|..-+.. ++.+. + . +..+|.+++...+.+ .+++...---|...+...++-.
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~--d-v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA-- 106 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGK--D-V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA-- 106 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCC--c-H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--
Confidence 468889999888888888765554 44442 2 2 335788999999999 8999888877888887544321
Q ss_pred HHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC
Q 039940 104 LIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP 183 (449)
Q Consensus 104 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 183 (449)
+ =-|..+-+-|.++|+.+|..|++++..+ +. |... +++-.-++.+..+..+.|+..|+.++-.+-+-++
T Consensus 107 L---LSIntfQk~L~DpN~LiRasALRvlSsI-Rv-p~Ia------PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~ 175 (968)
T KOG1060|consen 107 L---LSINTFQKALKDPNQLIRASALRVLSSI-RV-PMIA------PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP 175 (968)
T ss_pred e---eeHHHHHhhhcCCcHHHHHHHHHHHHhc-ch-hhHH------HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh
Confidence 1 2378899999999999999998888876 11 1111 1222223334478889999999999999988765
Q ss_pred CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 039940 184 QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263 (449)
Q Consensus 184 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~ 263 (449)
.... .++..+-.+|.+.++.+.-.++.+.-.+|-..-+... +-...+..++.+-+.--+.-.+..|..-|+
T Consensus 176 e~k~----qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 176 EQKD----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred hhHH----HHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 4433 5667777888888999999999999888855433222 334556666655443334444444444432
Q ss_pred CC---hhhHH---------------------HHHhcC----CHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940 264 GD---DFQTQ---------------------CVINHG----AVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV 315 (449)
Q Consensus 264 ~~---~~~~~---------------------~~~~~~----~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 315 (449)
.. +.... .+.... +++..-.++.+. ++.|.-.++.+...++..+.
T Consensus 247 ~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~~------ 319 (968)
T KOG1060|consen 247 HQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKNQ------ 319 (968)
T ss_pred hcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHHH------
Confidence 20 10000 000000 123334455666 77788888888887765331
Q ss_pred HHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC----------------CHHHHH--------HHHHcCC----hHHH
Q 039940 316 IDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG----------------TQEQIK--------YLVREGC----IKPL 367 (449)
Q Consensus 316 ~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----------------~~~~~~--------~l~~~~~----~~~L 367 (449)
..++++.|+++|.+ +..+|...+..+..++... ++.+.+ .+.+++- +.-+
T Consensus 320 -~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~ 397 (968)
T KOG1060|consen 320 -VTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILREL 397 (968)
T ss_pred -HHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 12467788887765 4466766676766666541 111111 1222222 2223
Q ss_pred HhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940 368 CDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL 446 (449)
Q Consensus 368 ~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~ 446 (449)
..+.++.|..+...++.+|.......... ....++-|.++..+.+..+-..+...|.++..
T Consensus 398 q~YI~s~d~~faa~aV~AiGrCA~~~~sv------------------~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 398 QTYIKSSDRSFAAAAVKAIGRCASRIGSV------------------TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHhhCch------------------hhHHHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence 33344455555555666665555433221 12236777888777788887777777777643
No 89
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=6.2e-06 Score=76.81 Aligned_cols=223 Identities=12% Similarity=0.111 Sum_probs=150.6
Q ss_pred HHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC-----hhHHHH
Q 039940 155 LLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT-----NDKIQA 229 (449)
Q Consensus 155 l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~ 229 (449)
+..+. ++.|..|+.+|+..+..|.... .....+....++.+.+++..++..|+..+....... .+..+.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 55555 7788888999988888887743 112345566788888889999998866655443222 111121
Q ss_pred HHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC--
Q 039940 230 VIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-- 307 (449)
Q Consensus 230 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-- 307 (449)
-....++..+...+.+.+..+|..|..+|+.+-..+++...+.++.+++..+-..-...+.++-.. .=+.+++|
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~----s~GewSsGk~ 352 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALY----SSGEWSSGKE 352 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHH----hcCCcccCcc
Confidence 222256788889999999999999999999998777777766666555543332221110111111 11111111
Q ss_pred ---------CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHH
Q 039940 308 ---------NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEI 378 (449)
Q Consensus 308 ---------~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~ 378 (449)
.++.-..++..|.--.++.-+.++=.+||.+|...++.++.. .+.+... .+..|++++.++...+
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDEIEVV 426 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccHHHHH
Confidence 112233466677777888888888889999999999999986 4554433 6889999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 039940 379 VTVCLKGLENILKVG 393 (449)
Q Consensus 379 ~~~~~~~l~~l~~~~ 393 (449)
+..|+.+|..+....
T Consensus 427 RL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 427 RLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888764
No 90
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.52 E-value=3.2e-06 Score=62.28 Aligned_cols=154 Identities=8% Similarity=0.011 Sum_probs=123.8
Q ss_pred CHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHH
Q 039940 277 AVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIK 356 (449)
Q Consensus 277 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 356 (449)
.+..|+.-.....+.+.+.....-|+|++. +|.+...+.+.++++.+++.+...+..+++.++.+|+|++. ++...+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~ 93 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence 344555555544478889998888999965 56778888899999999999999999999999999999998 678889
Q ss_pred HHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHH
Q 039940 357 YLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREK 436 (449)
Q Consensus 357 ~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~ 436 (449)
.+.+.++++.++..++++...+...++..+..+...+.. +...+-.-..++.++....+.+-+.+..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL 160 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERNL 160 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999988888888888766644333 3445555566777888877777888888
Q ss_pred HHHHHHHhcC
Q 039940 437 AVTILETYWL 446 (449)
Q Consensus 437 a~~~i~~~~~ 446 (449)
|...++.+..
T Consensus 161 a~~fl~~~~~ 170 (173)
T KOG4646|consen 161 ASAFLDKHVH 170 (173)
T ss_pred HHHHHHhhcc
Confidence 8888887654
No 91
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=0.00015 Score=71.49 Aligned_cols=303 Identities=12% Similarity=0.168 Sum_probs=199.6
Q ss_pred hhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 21 LEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 21 ~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
.|.++-++-.+.+ .++.++..|+..+..+... .+....+...|++..|+.+|.+.. ..+..++.+|..+++ +++
T Consensus 1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~P--S~R~~vL~vLYAL~S-~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQP--SMRARVLDVLYALSS-NGQ 1844 (2235)
T ss_pred hcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcCh--HHHHHHHHHHHHHhc-CcH
Confidence 4556666666664 6788999999888777543 788889999999999999998864 788999999999998 677
Q ss_pred hhHHHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcCC---CchhhhHhh----------cCCHHHHHHHHcc-ccc
Q 039940 100 NTKVLIDHGAVPIFVKLLA-SPSDDVREQAVWALGNIVAHS---PGCRNLVLH----------EEALIPLLAQLNE-HAR 164 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~i~~l~~~l~~-~~~ 164 (449)
....-.+.|++..+..++- +.++..|.+++..++.+..+. |..+-.+++ ...-...+..+.. +++
T Consensus 1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence 7777778888888887764 567899999999999997543 211111100 0011233333321 122
Q ss_pred HH------HHHHHHHHHHHhhcC----C---C--------------------------------------CCChhhhhch
Q 039940 165 LS------MLRIGTWTLSNLCKG----K---P--------------------------------------QPPFDQVRPV 193 (449)
Q Consensus 165 ~~------~~~~a~~~l~~l~~~----~---~--------------------------------------~~~~~~~~~~ 193 (449)
++ .+......+..+..+ . | ........+.
T Consensus 1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence 22 222222222222110 0 0 0111223455
Q ss_pred HHHHHHhhcCCC--HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHH
Q 039940 194 LPALAQLIHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC 271 (449)
Q Consensus 194 l~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 271 (449)
+..+..++..++ .....-...++..+.+..+...+.+-..|.+|.++..+...+..+-..|+++|..++.. .-..+.
T Consensus 2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~A 2083 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCDA 2083 (2235)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHH
Confidence 556666665443 22233333444555566666666666679999999999998888889999999999875 445555
Q ss_pred HHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcC
Q 039940 272 VINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDA 331 (449)
Q Consensus 272 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~ 331 (449)
+.....+..++..|+.. +...--|+.+|..+.. ...+.....++.|.+|.|+.+|...
T Consensus 2084 MA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2084 MAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 66666777788888765 3344577888887765 4456677778899999999999754
No 92
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00092 Score=63.36 Aligned_cols=296 Identities=17% Similarity=0.171 Sum_probs=182.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCC--ChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940 69 RFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP--SDDVREQAVWALGNIVAHSPGCRNLV 146 (449)
Q Consensus 69 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~ 146 (449)
.+-.=|.+.+ +.....|+.+++|+.. .+.+..+.. =|+ ++|-++ ..-++..++-+|..+-+.+|.. +
T Consensus 115 ~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl---~ 183 (938)
T KOG1077|consen 115 SIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---V 183 (938)
T ss_pred HHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---c
Confidence 3334455666 6788889999999986 445554432 134 555543 3667888888888887776653 3
Q ss_pred hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-------------CCHHHHHHHH
Q 039940 147 LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL-------------DDEEVLRNVC 213 (449)
Q Consensus 147 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-------------~~~~~~~~~~ 213 (449)
...+....++.+| ++.+..+...+...+..++...|.........++..|...... +.|.+...++
T Consensus 184 ~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~ 262 (938)
T KOG1077|consen 184 NPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL 262 (938)
T ss_pred ChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence 2334577888888 6666777778888888888877655444444444444444321 3577888888
Q ss_pred HHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC----C---CcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhc
Q 039940 214 WTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP----S---PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLI 286 (449)
Q Consensus 214 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~----~---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 286 (449)
+.|.+.-...+.....-. ..+++.++...+.+ + ...+...++-.-+++.+.+...+.+. ..+..|-+++.
T Consensus 263 rlLq~~p~~~D~~~r~~l-~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls 339 (938)
T KOG1077|consen 263 RLLQIYPTPEDPSTRARL-NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLS 339 (938)
T ss_pred HHHHhCCCCCCchHHHHH-HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhh
Confidence 888887433332222111 13445555444421 1 11222333333444444343333332 35778888898
Q ss_pred cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh-cCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChH
Q 039940 287 NNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ-DAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIK 365 (449)
Q Consensus 287 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~ 365 (449)
+. ...+|.-|...++.++... .....+-.+ .+.++..|+ ..|..+|+.|...|..++.. ++.+. .+.
T Consensus 340 ~r-E~NiRYLaLEsm~~L~ss~-~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~---~Nak~-----IV~ 407 (938)
T KOG1077|consen 340 HR-ETNIRYLALESMCKLASSE-FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV---SNAKQ-----IVA 407 (938)
T ss_pred cc-cccchhhhHHHHHHHHhcc-chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch---hhHHH-----HHH
Confidence 88 8889999999888887642 223333332 677888888 55999999999999999865 44444 355
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940 366 PLCDLLLCADPEIVTVCLKGLENILK 391 (449)
Q Consensus 366 ~L~~ll~~~~~~~~~~~~~~l~~l~~ 391 (449)
-|++.+.+.|+.+++...-=+..+.+
T Consensus 408 elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 408 ELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 66777777887777654433334443
No 93
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.45 E-value=0.00011 Score=67.77 Aligned_cols=244 Identities=17% Similarity=0.050 Sum_probs=164.6
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940 65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN 144 (449)
Q Consensus 65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 144 (449)
..++.++..+......++...++.++.... .+ ..+..|+..|.+.++.++..+..+|+.+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE--DA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC--Ch---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 457778888854333677666665553221 11 13789999999888989999999998651
Q ss_pred hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh
Q 039940 145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN 224 (449)
Q Consensus 145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~ 224 (449)
.......|+..+ ++.++.++..++.++.... ....+.+..++++.++.++..++.+++.+-..
T Consensus 115 ---~~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 115 ---GRQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred ---chHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 122455677777 7778888888887766622 12356788888889999999999999887632
Q ss_pred hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHH
Q 039940 225 DKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNI 304 (449)
Q Consensus 225 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl 304 (449)
..++.|...+.+.++.|+..|+..++.+-. +. .+..+....... .......+...+...
T Consensus 178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~-g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLE-GGPHRQRLLVLLAVA 236 (410)
T ss_pred ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence 345667777889999999999999876633 21 234455534433 333444444444333
Q ss_pred hcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHH
Q 039940 305 TAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLK 384 (449)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~ 384 (449)
+.+ ..++.|..++.++ .++..++++++.+-.. . .++.|+..+.+. .+...|-+
T Consensus 237 --~~~---------~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p---~---------av~~L~~~l~d~--~~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA--ATRREALRAVGLVGDV---E---------AAPWCLEAMREP--PWARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh--hhHHHHHHHHHHcCCc---c---------hHHHHHHHhcCc--HHHHHHHH
Confidence 333 3567777788764 4999999999987543 2 566777776533 48889999
Q ss_pred HHHHHHHh
Q 039940 385 GLENILKV 392 (449)
Q Consensus 385 ~l~~l~~~ 392 (449)
++..++-.
T Consensus 290 A~~~ItG~ 297 (410)
T TIGR02270 290 AFSLITGM 297 (410)
T ss_pred HHHHhhCC
Confidence 99988853
No 94
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.44 E-value=5.2e-05 Score=68.99 Aligned_cols=338 Identities=14% Similarity=0.097 Sum_probs=203.1
Q ss_pred HHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC--CCh
Q 039940 45 QFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS--PSD 122 (449)
Q Consensus 45 ~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~ 122 (449)
.|..+.+.. ..-...+.-....+.+..++-+++ .+++..+.+++..+.. +++....+.+.++--.++.-|.. .+.
T Consensus 6 ~Lv~l~~~~-p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~ 82 (371)
T PF14664_consen 6 DLVDLLKRH-PTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKND 82 (371)
T ss_pred HHHHHHHhC-chhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCCh
Confidence 344444432 222333333444556665566666 7999999999999998 67888888888866667777765 346
Q ss_pred HHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc
Q 039940 123 DVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH 202 (449)
Q Consensus 123 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~ 202 (449)
.-|++|+..+..+........ ....+.+..++... .+.+...+..++.++..++-.+| ......|++..+...+.
T Consensus 83 ~ER~QALkliR~~l~~~~~~~--~~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~ 157 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAIA-EHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALI 157 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHH
Confidence 678899999999876532211 12556788888888 66788899999999999998753 44445688899998887
Q ss_pred CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-------CC--cchhhHHHHHHHhhcCChhhHHHHH
Q 039940 203 LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-------SP--SVLIPALRTVGNIVTGDDFQTQCVI 273 (449)
Q Consensus 203 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-------~~--~v~~~a~~~l~~l~~~~~~~~~~~~ 273 (449)
.+..++...++.++..+...+..+ +.+...--++.++.-..+. +. +....+..++..+...=+.....-.
T Consensus 158 d~~~~~~~~l~~~lL~lLd~p~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~ 236 (371)
T PF14664_consen 158 DGSFSISESLLDTLLYLLDSPRTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM 236 (371)
T ss_pred hccHhHHHHHHHHHHHHhCCcchh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence 766668888999999988766543 2222211233333333222 12 1233344445444433222111111
Q ss_pred h-cCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHH------HHHCCChHHHHHHh---hcCchhHHHHHHHH
Q 039940 274 N-HGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQA------VIDAGLIVPLVNLL---QDAEFDIKKEAAWA 342 (449)
Q Consensus 274 ~-~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~------l~~~~~~~~L~~ll---~~~~~~v~~~a~~a 342 (449)
+ ..++..|+..|..+ .+++|+.....+..+.. ..+..... ....|-+..--++- .......... ..-
T Consensus 237 ~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~-~~~ 314 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHR-SSK 314 (371)
T ss_pred CCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcc-ccc
Confidence 1 25788899999998 88899999988888875 22211111 11111110000100 0000000000 000
Q ss_pred HHHhhccCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhh
Q 039940 343 ISNATKAGTQEQIKYLVREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 343 L~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~ 393 (449)
=.+++.+.-.-....|++.|.++.|+++..+. |+.+..+|.-.|..++...
T Consensus 315 ~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la 366 (371)
T PF14664_consen 315 RPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLA 366 (371)
T ss_pred cccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 01122111112245577899999999999987 8888888888888887654
No 95
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7.4e-05 Score=64.02 Aligned_cols=216 Identities=15% Similarity=0.182 Sum_probs=162.0
Q ss_pred HHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh----hHHHHHHHhCcHHHHHHhhCCC
Q 039940 171 GTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN----DKIQAVIEAGVCGPLVELLGHP 246 (449)
Q Consensus 171 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~~~~~~~~~L~~ll~~~ 246 (449)
+..+|-.+..... ......+..|.+..-|..++..++.-++..+..+..+.+ ..+..+++.++++.++..+...
T Consensus 63 cVscLERLfkake--gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge 140 (524)
T KOG4413|consen 63 CVSCLERLFKAKE--GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE 140 (524)
T ss_pred HHHHHHHHHhhcc--chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence 5555666655431 112234667777777888899999999988888876655 2344566889999999999999
Q ss_pred CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH--hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHH
Q 039940 247 SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL--LINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPL 324 (449)
Q Consensus 247 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l--l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L 324 (449)
+.++...|...+..++.. +.....++++...+.+... .... +.-+|......+..+.+-+++...+....|.+..|
T Consensus 141 ddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred cHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 999999999999999886 5555667777776655333 3333 55678888888888888889988888899999999
Q ss_pred HHHhhc-CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHh
Q 039940 325 VNLLQD-AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC--ADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 325 ~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~~~~~~~~~l~~l~~~ 392 (449)
..-++. +|.-|+.+++.....++.. ...++++-+.|+++.+++.+.. .+|.-...++-...+++..
T Consensus 219 eaElkGteDtLVianciElvteLaet--eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgk 287 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAET--EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK 287 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHHH--hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc
Confidence 998887 5888999999999998873 3456777789999999999875 4555555566666666543
No 96
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.41 E-value=0.00027 Score=64.62 Aligned_cols=251 Identities=27% Similarity=0.316 Sum_probs=173.7
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
..++.+.+.+.+++..++..|+..+..+.. ...++.+..++.+.+ +.++..|+.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~--- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLSDED-PRVRDAAADALGELGD--P--- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---
Confidence 578899999999999999999988665532 235889999999999 8999999998888775 2
Q ss_pred HHHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc-----------cHHHHH
Q 039940 102 KVLIDHGAVPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA-----------RLSMLR 169 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-----------~~~~~~ 169 (449)
..++.++.++. +++..+|..+.++|+.+-.. ..+.+++..+.+.. ...++.
T Consensus 105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 34788999888 58999999999999988321 12556777773322 013455
Q ss_pred HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCc
Q 039940 170 IGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPS 249 (449)
Q Consensus 170 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~ 249 (449)
.+...+..+-.. ...+.+...+...+..++..+..++..+.... ..+.+.+...+.+++..
T Consensus 168 ~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 168 AAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 555555544333 45677778888888888888888888776554 23456777788888888
Q ss_pred chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh
Q 039940 250 VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ 329 (449)
Q Consensus 250 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~ 329 (449)
++..++..++.+-.. ...+.+...+... +..++..+...+... ... .....+...+.
T Consensus 229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence 888888888766432 2455677777777 666666655555411 111 12344555556
Q ss_pred cCchhHHHHHHHHHHHhhcc
Q 039940 330 DAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 330 ~~~~~v~~~a~~aL~~l~~~ 349 (449)
+.+..++..+..++......
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 286 DEANAVRLEAALALGQIGQE 305 (335)
T ss_pred cchhhHHHHHHHHHHhhccc
Confidence 66677777777777766553
No 97
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.39 E-value=1.4e-05 Score=58.99 Aligned_cols=125 Identities=17% Similarity=0.173 Sum_probs=104.2
Q ss_pred hhhcHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940 20 KLEILPAMVAGVW-SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 20 ~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 98 (449)
..+-+..++.-.+ ..+.+.+...+..|.+++-+ ..+...+.+.++++.+++.|..++ +.+.+.++..|+|+|. ++
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~-d~ 89 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCL-DK 89 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhcc-Ch
Confidence 3444555655555 35677777777788898755 577888999999999999999999 8999999999999998 68
Q ss_pred hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhh
Q 039940 99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLH 148 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 148 (449)
.+...+.+.+++|.++..++++.+.....++.++..++...-..++.+..
T Consensus 90 ~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 90 TNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 89999999999999999999999999999999999998766666666644
No 98
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.38 E-value=8.1e-05 Score=63.49 Aligned_cols=239 Identities=15% Similarity=0.140 Sum_probs=150.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChhhHHHHH
Q 039940 196 ALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCVI 273 (449)
Q Consensus 196 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 273 (449)
.+-++++.-++-.+--+++|+.++......+.....+...-..++.++++ +..+++...+.+++.++.. +...+.+-
T Consensus 153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~ 231 (432)
T COG5231 153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDID 231 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHH
Confidence 34444444456667778889988886655443334444555677777766 4567888999999988765 44443222
Q ss_pred h-cCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH-HHHHHHH-HCCChHHHHHHhhcC--chhHHHHHHHHHHHhhc
Q 039940 274 N-HGAVPYLLALLINNHKKSIKKESCWTVSNITAGNR-KQIQAVI-DAGLIVPLVNLLQDA--EFDIKKEAAWAISNATK 348 (449)
Q Consensus 274 ~-~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~-~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 348 (449)
+ ...+..++.+.+.....+|-+-++..+.|++...| ..+..+. ..++.+..-.++..+ |.+++...-..=..+..
T Consensus 232 K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~ 311 (432)
T COG5231 232 KMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ 311 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence 1 23566677777655356788888999999987332 3333333 334555554444443 44444322221111111
Q ss_pred c---------------------CC--------HHHHHHHHHc--CChHHHHhhccCCCHH-HHHHHHHHHHHHHHhhhhh
Q 039940 349 A---------------------GT--------QEQIKYLVRE--GCIKPLCDLLLCADPE-IVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 349 ~---------------------~~--------~~~~~~l~~~--~~~~~L~~ll~~~~~~-~~~~~~~~l~~l~~~~~~~ 396 (449)
. .. ..+...+.+. ..+..|..+++..++. ....|+.-+..+.+..+.
T Consensus 312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE- 390 (432)
T COG5231 312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE- 390 (432)
T ss_pred hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-
Confidence 1 00 1223444443 3577888888887666 455666667777766554
Q ss_pred hccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940 397 KNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
....+...|+.+.+..|.+|++++++-.|.+..+.+..++
T Consensus 391 ------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~~ 430 (432)
T COG5231 391 ------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISSE 430 (432)
T ss_pred ------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhhh
Confidence 3678899999999999999999999999999999887654
No 99
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=8.9e-05 Score=75.76 Aligned_cols=376 Identities=12% Similarity=0.094 Sum_probs=212.1
Q ss_pred HHHHHHhcCCCHHHHHHHH-HHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC-CChhhhH
Q 039940 25 PAMVAGVWSDDNSMQLEAA-TQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS-GTSVNTK 102 (449)
Q Consensus 25 ~~l~~~l~s~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 102 (449)
..+...+.|.++..|..++ |.|.-. ..-+..+-.......+...+.++|.+.+ +-+|..|.+.++-+-. ++...++
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~v-q~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLV-QYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHH-HHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence 4555666788998887664 554433 3222222222333455688889999888 7888888887775554 2333333
Q ss_pred HHHhCCChHHHHHhhCCCC---------hHHH-------------HHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc
Q 039940 103 VLIDHGAVPIFVKLLASPS---------DDVR-------------EQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN 160 (449)
Q Consensus 103 ~~~~~~~i~~L~~~l~~~~---------~~~~-------------~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~ 160 (449)
+.+..|+.-|..+. .++. -....-|.|++.+-.. .+ .+-.++++-+
T Consensus 899 -----~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-Pd------LVYKFM~LAn 966 (1702)
T KOG0915|consen 899 -----SLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-PD------LVYKFMQLAN 966 (1702)
T ss_pred -----HHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-hH------HHHHHHHHhh
Confidence 33455555443211 1111 1112223333322100 01 1123333333
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHH
Q 039940 161 EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240 (449)
Q Consensus 161 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~ 240 (449)
++..-.-+.-|+.-+..++..............+|.|.+.=-+++..++......-..+...+....+...+ .+++-|+
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL 1045 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELL 1045 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHH
Confidence 333334444555556666655433333444667777777777888999888777777777665555554444 6788888
Q ss_pred HhhCCCCCcchhhHHHHHHHhhcCChhh--HHHHHhcCCHHHHHHHhccCCchhHHHH---HHHHHHHHhcC-----CHH
Q 039940 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQ--TQCVINHGAVPYLLALLINNHKKSIKKE---SCWTVSNITAG-----NRK 310 (449)
Q Consensus 241 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~~v~~~---a~~~l~nl~~~-----~~~ 310 (449)
.-+.+..+.+|+.+|-++..+..+.+.. .+.+ ..++..+...+.+- ...||+. ++.+++.++.. +..
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~l--pelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~ 1122 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKL--PELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGA 1122 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence 8889999999999999999999885432 2222 23555666666655 5566665 45666666641 111
Q ss_pred HHHHHHHCCChHHHHHH-hhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHH-HHHHHHHHH
Q 039940 311 QIQAVIDAGLIVPLVNL-LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIV-TVCLKGLEN 388 (449)
Q Consensus 311 ~~~~l~~~~~~~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~-~~~~~~l~~ 388 (449)
..+..+. .++|.|++- +.+.-+++|..++.++..++.+........+- .+++.|++....-.+.+. ..++.+...
T Consensus 1123 ~~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~~~~ 1199 (1702)
T KOG0915|consen 1123 KGKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRLINI 1199 (1702)
T ss_pred cHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhhhhh
Confidence 1122222 245554431 11446799999999999999985543333222 367778887777666554 345544221
Q ss_pred HHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHH
Q 039940 389 ILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGI 433 (449)
Q Consensus 389 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i 433 (449)
=.+..+... ....+....++.++.+.++-+..+
T Consensus 1200 e~ealDt~R------------~s~aksspmmeTi~~ci~~iD~~v 1232 (1702)
T KOG0915|consen 1200 ETEALDTLR------------ASAAKSSPMMETINKCINYIDISV 1232 (1702)
T ss_pred HHHHHHHHH------------HhhhcCCcHHHHHHHHHHhhhHHH
Confidence 122222221 344455556777777766665443
No 100
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.38 E-value=2.5e-05 Score=77.81 Aligned_cols=270 Identities=14% Similarity=0.137 Sum_probs=177.3
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC---CChh
Q 039940 24 LPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS---GTSV 99 (449)
Q Consensus 24 i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~ 99 (449)
++.+...++. ...+.+..|+..|..++.... .+..-..++|.++.++.++. .++|..|+..|+.+.. +-+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 5666666664 457778888888888864431 22333567999999999999 8999999999988765 1222
Q ss_pred hhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcC------------------CCchhhhH-----hhc----CC
Q 039940 100 NTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAH------------------SPGCRNLV-----LHE----EA 151 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~------------------~~~~~~~~-----~~~----~~ 151 (449)
.-..+...-++|.|-.++.+ ....+|..-+..|+.++.. .++..... .+. ..
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 22334444567888888877 4455555555555555421 11110000 000 01
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH
Q 039940 152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI 231 (449)
Q Consensus 152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 231 (449)
+...+.-|..++++.|++..+..+.-||.... +.....-+++.|+.+|+..|+.+|..-...|..++..-..+ -+
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~ 653 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SV 653 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eH
Confidence 22222222255667788887777777776531 11122457889999999999999988888877665332111 13
Q ss_pred HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 232 EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 232 ~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
+..++|.|..-|.++++.|...|+.++..|+...--.+..+ ..+++....+|-++ +.-+|..++..+..++.
T Consensus 654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 44678999999999999999999999999987532222222 23677778888899 99999999999988875
No 101
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.36 E-value=0.00079 Score=63.22 Aligned_cols=350 Identities=15% Similarity=0.123 Sum_probs=200.7
Q ss_pred HHHHHHHhcCCCH---HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 24 LPAMVAGVWSDDN---SMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 24 i~~l~~~l~s~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
+|.++..|.+++. ......+.+|..++.. .+-.+.+. ..++..+-..++.....+....++.++.++.....+.
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence 3677788876554 5556778888888653 23233332 2556666666654444677777888888776533222
Q ss_pred -----hHHHHhCCChHHHHHhhCC-----C--ChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc--------
Q 039940 101 -----TKVLIDHGAVPIFVKLLAS-----P--SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN-------- 160 (449)
Q Consensus 101 -----~~~~~~~~~i~~L~~~l~~-----~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-------- 160 (449)
.....+..+++.+.+.... . ++.+...+..++..+.+.-+..+..- .+..+...+.
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~ 153 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPF 153 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCC
Confidence 2333344477877776632 1 24555555566665554443322221 1333333332
Q ss_pred ---ccccHHHHHHHHHHHHH-hhcCCCCCChhhhhchHHHHHHhhcC-CCHHHHHHHHHHHHHcccCC--hhHHHHHHHh
Q 039940 161 ---EHARLSMLRIGTWTLSN-LCKGKPQPPFDQVRPVLPALAQLIHL-DDEEVLRNVCWTLSNLSDGT--NDKIQAVIEA 233 (449)
Q Consensus 161 ---~~~~~~~~~~a~~~l~~-l~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~ 233 (449)
.+............+.. ++.-++..........+..++.+..+ +++..+..++.+++.+...- ++..+
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~----- 228 (415)
T PF12460_consen 154 QPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD----- 228 (415)
T ss_pred CccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----
Confidence 01001112222222222 22222333333444577777776554 46888888888888887542 22122
Q ss_pred CcHHHHHHhh-CCCCCcchhhHHHHHHHh----hcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 039940 234 GVCGPLVELL-GHPSPSVLIPALRTVGNI----VTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN 308 (449)
Q Consensus 234 ~~~~~L~~ll-~~~~~~v~~~a~~~l~~l----~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~ 308 (449)
++++.+.... .......+..++..+..+ ...++.... ..++.|+.++.+ +++...|+.++.-+....
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~ 300 (415)
T PF12460_consen 229 EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLSDS 300 (415)
T ss_pred HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCc
Confidence 2344444434 333344444444444333 222222221 356678888875 567888889888887753
Q ss_pred HH--------HHHHHHHC----CChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCH
Q 039940 309 RK--------QIQAVIDA----GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADP 376 (449)
Q Consensus 309 ~~--------~~~~l~~~----~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~ 376 (449)
+. .++.+.++ .++|.|++-.+..+...+.....||+++..+........=. ..+++.|++.++.+|+
T Consensus 301 ~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l-~~LlPLLlqsL~~~~~ 379 (415)
T PF12460_consen 301 DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL-PTLLPLLLQSLSLPDA 379 (415)
T ss_pred HHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHHHHhCCCCH
Confidence 32 23334433 35677777777777779999999999999986544322211 3478999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 039940 377 EIVTVCLKGLENILKVGE 394 (449)
Q Consensus 377 ~~~~~~~~~l~~l~~~~~ 394 (449)
+++..++.+|..++...+
T Consensus 380 ~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 380 DVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHHHHHHcCH
Confidence 999999999999997664
No 102
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.33 E-value=6.9e-05 Score=63.90 Aligned_cols=230 Identities=14% Similarity=0.170 Sum_probs=152.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhC-CChHHHHHhhCC--CChHHHHHHHHHHHHHhcCCCchhhhHhh-
Q 039940 73 FLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDH-GAVPIFVKLLAS--PSDDVREQAVWALGNIVAHSPGCRNLVLH- 148 (449)
Q Consensus 73 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~- 148 (449)
+++.-+ +-.+.-|++++.++.. .++.|..+-.. ..-..++..+++ +...++.+.+.+++.++... .+.+.+-.
T Consensus 157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi~K~ 233 (432)
T COG5231 157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDIDKM 233 (432)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHHHHH
Confidence 444444 5677889999999998 57777665443 345667777765 56889999999999986543 44433322
Q ss_pred cCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh--hhhhc-hHHHHHHhhcC--CCHHHHHHHHHHHHHcccC-
Q 039940 149 EEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF--DQVRP-VLPALAQLIHL--DDEEVLRNVCWTLSNLSDG- 222 (449)
Q Consensus 149 ~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~-~l~~l~~ll~~--~~~~~~~~~~~~l~~l~~~- 222 (449)
...+.-++........+.+.+-++.++.|++...|.... ....+ +.+..-.++.. .|.+++...-..=..+..+
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 234556677776667788999999999999985433221 11222 33433333332 3455443322211111111
Q ss_pred --------------------Ch---------hHHHHHHH--hCcHHHHHHhhCCCCCc-chhhHHHHHHHhhcCChhhHH
Q 039940 223 --------------------TN---------DKIQAVIE--AGVCGPLVELLGHPSPS-VLIPALRTVGNIVTGDDFQTQ 270 (449)
Q Consensus 223 --------------------~~---------~~~~~~~~--~~~~~~L~~ll~~~~~~-v~~~a~~~l~~l~~~~~~~~~ 270 (449)
++ .+.+.+.+ ..++..|..+++..++. ...-||.-++.+.+..++...
T Consensus 314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~ 393 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA 393 (432)
T ss_pred hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence 10 11222222 25678888999988777 566689999999999999998
Q ss_pred HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 271 CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 271 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
.+.+.|+-+.++.++.++ |++|+-+|..++..+..
T Consensus 394 vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 394 VLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 888999999999999999 99999999999877653
No 103
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.32 E-value=7.5e-05 Score=68.78 Aligned_cols=290 Identities=13% Similarity=0.100 Sum_probs=172.1
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
...|.|-.++++....+++++++..+.++..+ - ....++ ..+..|-.+|+++. ...+..|+++|..++...|+..
T Consensus 264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v-~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEEN--V-GSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--c-CHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCcee
Confidence 33445555566667889999999998886543 1 112222 23566777788888 7889999999999988555422
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940 102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 181 (449)
.-+ =+-+-.+..+.+..+...|+..|..- +..+..+.+ +..+..++ ++-+...+..+..++..||-.
T Consensus 339 ---~vc--N~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~ 405 (898)
T COG5240 339 ---SVC--NKEVESLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLL 405 (898)
T ss_pred ---eec--ChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhh
Confidence 111 14455566677777766666555442 222222222 22333333 333444555666677777776
Q ss_pred CCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC-CcchhhHHHHHH
Q 039940 182 KPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS-PSVLIPALRTVG 259 (449)
Q Consensus 182 ~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~l~ 259 (449)
.|...... +..|...|. .+.-+.+..+..++..+....|+..+ ..++.|...+.+.. +++. +++|+
T Consensus 406 Fp~k~~s~----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~---vrIL~ 473 (898)
T COG5240 406 FPSKKLSY----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQIT---VRILG 473 (898)
T ss_pred CcHHHHHH----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHH---HHHHH
Confidence 65544433 444444443 45678888899999888877765544 34566676666543 3344 44444
Q ss_pred HhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHH
Q 039940 260 NIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEA 339 (449)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a 339 (449)
-+....+.... ....+..+..-+--. +..+|..|..+|+.++-...+ ......+...|-+.+++.|.++|..|
T Consensus 474 iLG~EgP~a~~---P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrA 546 (898)
T COG5240 474 ILGREGPRAKT---PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRA 546 (898)
T ss_pred HhcccCCCCCC---cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHH
Confidence 44333221110 011233333333233 667999999999988753221 11222355678888999999999999
Q ss_pred HHHHHHhhc
Q 039940 340 AWAISNATK 348 (449)
Q Consensus 340 ~~aL~~l~~ 348 (449)
..++.++-.
T Consensus 547 sf~l~~~~~ 555 (898)
T COG5240 547 SFLLRNMRL 555 (898)
T ss_pred HHHHHhhhh
Confidence 999999864
No 104
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.31 E-value=1.5e-06 Score=51.48 Aligned_cols=41 Identities=41% Similarity=0.848 Sum_probs=38.3
Q ss_pred ChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhc
Q 039940 97 TSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA 137 (449)
Q Consensus 97 ~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 137 (449)
+++++..+++.|++|.|+++|.++++++++.|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999973
No 105
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=5.8e-06 Score=77.00 Aligned_cols=260 Identities=17% Similarity=0.101 Sum_probs=166.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHH---HHhcC--CChh
Q 039940 25 PAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVL---TNIAS--GTSV 99 (449)
Q Consensus 25 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L---~~l~~--~~~~ 99 (449)
..+.....+.|..++..|+..|..+..+. .--+. .....++.+.+.+ .+++..|++.+ +|.+- ...+
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~~~-----~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGF--KLSKA-----CYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhcccc--cccHH-----HHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccch
Confidence 33777788899999999999998886542 21221 2566788899888 89999886555 45441 1112
Q ss_pred hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc----ccccHHHHHHHHHHH
Q 039940 100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN----EHARLSMLRIGTWTL 175 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~~~~~~~~~~a~~~l 175 (449)
.-+.-....++..++..+.+.+..+|..|..+|+.+-..+.++-...++. .++.-+. .+..+..... =
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK----Klms~lRRkr~ahkrpk~l~s----~ 344 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK----KLMSRLRRKRTAHKRPKALYS----S 344 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH----HHhhhhhhhhhcccchHHHHh----c
Confidence 22222233568899999999999999999999998855443332222221 2222111 0111111000 0
Q ss_pred HHhhcCC------C------CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh
Q 039940 176 SNLCKGK------P------QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL 243 (449)
Q Consensus 176 ~~l~~~~------~------~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll 243 (449)
...+++. | ........|+-..+++-+.++-.+++.++...++.|+...+.... ..++.|++++
T Consensus 345 GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMf 419 (823)
T KOG2259|consen 345 GEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMF 419 (823)
T ss_pred CCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHh
Confidence 0011111 1 011122256667788888777899999999999999988776443 4578999999
Q ss_pred CCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 039940 244 GHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312 (449)
Q Consensus 244 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~ 312 (449)
.+....+|..|..+|..++.+ ..++...++.+...|.+. +.++|...-..|.+.-..+.+.+
T Consensus 420 NDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i 481 (823)
T KOG2259|consen 420 NDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDR-SVDVREALRELLKNARVSDLECI 481 (823)
T ss_pred ccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHH
Confidence 999999999999999988765 123345677788888888 88888877777666533444433
No 106
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00089 Score=68.84 Aligned_cols=289 Identities=17% Similarity=0.183 Sum_probs=165.6
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch--
Q 039940 65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC-- 142 (449)
Q Consensus 65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-- 142 (449)
.++|.|.+.=-+++ ..+|..-..+...+..++....+...+ .++.-|+.-|.+...++|+.++-+|..+..+.|.-
T Consensus 998 kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred HhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 45788888777888 788887777777777755555554443 56778888888889999999999999999876542
Q ss_pred hhhHhhcCCHHHHHHHHcccccHHHHHH---HHHHHHHhhcCC-----CCCChhhhhchHHHHHHh-hcCCCHHHHHHHH
Q 039940 143 RNLVLHEEALIPLLAQLNEHARLSMLRI---GTWTLSNLCKGK-----PQPPFDQVRPVLPALAQL-IHLDDEEVLRNVC 213 (449)
Q Consensus 143 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~---a~~~l~~l~~~~-----~~~~~~~~~~~l~~l~~l-l~~~~~~~~~~~~ 213 (449)
.+.+. .....++..+ ++-.+.+++. ++.+++.+|-.. +.........++|.+..- +-+.-++++.-++
T Consensus 1076 ~e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si 1152 (1702)
T KOG0915|consen 1076 KEKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSI 1152 (1702)
T ss_pred HHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence 11121 2333344444 4444556554 455666666443 111222334445554421 1145689999999
Q ss_pred HHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhh-HHHH----------HHHhhcCChhhHHH---HH------
Q 039940 214 WTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIP-ALRT----------VGNIVTGDDFQTQC---VI------ 273 (449)
Q Consensus 214 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~-a~~~----------l~~l~~~~~~~~~~---~~------ 273 (449)
.++..++...+....... ..+++.|+.....-++.+... +++. +..=+..+....+. .+
T Consensus 1153 ~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~ 1231 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDIS 1231 (1702)
T ss_pred HHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH
Confidence 999999987765433222 256666666666554443322 2222 11111111111000 00
Q ss_pred -hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCH
Q 039940 274 -NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQ 352 (449)
Q Consensus 274 -~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 352 (449)
=...+|.+.++++.+-.-..|..++..+.-++..-....... ....+..++..+++.++.+++..+.|.+.++....+
T Consensus 1232 vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1232 VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence 013455556666554334455555555555543110000000 012345556666777899999999999999998777
Q ss_pred HHHHHHHH
Q 039940 353 EQIKYLVR 360 (449)
Q Consensus 353 ~~~~~l~~ 360 (449)
++.+.+++
T Consensus 1311 dq~qKLie 1318 (1702)
T KOG0915|consen 1311 DQMQKLIE 1318 (1702)
T ss_pred HHHHHHHH
Confidence 77777554
No 107
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.29 E-value=2.1e-06 Score=50.79 Aligned_cols=41 Identities=24% Similarity=0.570 Sum_probs=37.4
Q ss_pred ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
+++.++.+++.|+++.|+.+|++. ++.++++|+|+|+|+++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 356788899999999999999998 99999999999999974
No 108
>PF05536 Neurochondrin: Neurochondrin
Probab=98.26 E-value=0.00017 Score=69.39 Aligned_cols=238 Identities=15% Similarity=0.137 Sum_probs=163.1
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch---hhhHhhcCCHHHHHHHHccc------ccHHHHHHHHHHHHHhh
Q 039940 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC---RNLVLHEEALIPLLAQLNEH------ARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 109 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~l~~~l~~~------~~~~~~~~a~~~l~~l~ 179 (449)
.+...+.+|+..+++-|-.++-.+.+++...+.. ++.+.+.=+.+.+-.+|... +....+.-++.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3667788888888888888888899998766532 33455555565566666331 33567778899999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCCH-HHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 180 KGKPQPPFDQVRPVLPALAQLIHLDDE-EVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
..+.........+-+|.++..+.+.+. ++...++.+|..++.. ++..+.+++.|.++.|...+.+ .+.....|+.++
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 976555555567889999999987766 9999999999999954 4456779999999999999887 666788899999
Q ss_pred HHhhcCChhhHHH---HHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH-HHH----HHHCCChHHHHHHhhc
Q 039940 259 GNIVTGDDFQTQC---VINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQ-IQA----VIDAGLIVPLVNLLQD 330 (449)
Q Consensus 259 ~~l~~~~~~~~~~---~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~----l~~~~~~~~L~~ll~~ 330 (449)
.+++......... -.-..+++.+-..+... ....+-+++..|+.+....+.. ... -+-..+...+..++.+
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 8887653311100 00123556666666666 6667888899999998755211 111 1122345556666666
Q ss_pred C-chhHHHHHHHHHHHhhcc
Q 039940 331 A-EFDIKKEAAWAISNATKA 349 (449)
Q Consensus 331 ~-~~~v~~~a~~aL~~l~~~ 349 (449)
. .+.-|..+....+.+...
T Consensus 243 r~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 5 566666666666666554
No 109
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.26 E-value=0.00045 Score=65.01 Aligned_cols=257 Identities=14% Similarity=0.106 Sum_probs=168.2
Q ss_pred CCcHHHHHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCC-----
Q 039940 55 SLPIDEVIQAGIVPRFVEFL---------LREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASP----- 120 (449)
Q Consensus 55 ~~~~~~~~~~~~i~~L~~ll---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~----- 120 (449)
......+....++..|.++- ....+.++...|++||+|+...++..++.+.+.|+.+.++..++..
T Consensus 12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~ 91 (446)
T PF10165_consen 12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ 91 (446)
T ss_pred cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence 34455555555566666654 2333479999999999999999999999999999999999999875
Q ss_pred ChHHHHHHHHHHHHHhcCCCchhhhHhh-cCCHHHHHHHHcc---------c-------ccHHHHHHHHHHHHHhhcCCC
Q 039940 121 SDDVREQAVWALGNIVAHSPGCRNLVLH-EEALIPLLAQLNE---------H-------ARLSMLRIGTWTLSNLCKGKP 183 (449)
Q Consensus 121 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~---------~-------~~~~~~~~a~~~l~~l~~~~~ 183 (449)
+.++.-..+++|.-++...+..+..+.+ .+++..+...+.. . .+.+....++..+.|++...+
T Consensus 92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~ 171 (446)
T PF10165_consen 92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP 171 (446)
T ss_pred ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence 6788888888888888777776655544 4666666665521 0 144567778889999988775
Q ss_pred CCCh----hhhhchHHHHHHhh---cC--CCHHHHHHHHHHHHHcccCChhH-------HH----HHHHhCcHHHHHHhh
Q 039940 184 QPPF----DQVRPVLPALAQLI---HL--DDEEVLRNVCWTLSNLSDGTNDK-------IQ----AVIEAGVCGPLVELL 243 (449)
Q Consensus 184 ~~~~----~~~~~~l~~l~~ll---~~--~~~~~~~~~~~~l~~l~~~~~~~-------~~----~~~~~~~~~~L~~ll 243 (449)
.... .....++..+..++ .+ +.......++.+|.|+--..... .. .......+..++.+|
T Consensus 172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L 251 (446)
T PF10165_consen 172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL 251 (446)
T ss_pred cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence 4433 22344555555552 11 23566778888888773211110 00 001123455555555
Q ss_pred CC-----C---CCcchhhHHHHHHHhhcCChhhHHHHH----------------hcCCHHHHHHHhccCCchhHHHHHHH
Q 039940 244 GH-----P---SPSVLIPALRTVGNIVTGDDFQTQCVI----------------NHGAVPYLLALLINNHKKSIKKESCW 299 (449)
Q Consensus 244 ~~-----~---~~~v~~~a~~~l~~l~~~~~~~~~~~~----------------~~~~l~~L~~ll~~~~~~~v~~~a~~ 299 (449)
.. . -.+.....+.+|.+++..+...++.+. ...+-..|+.++.+. .+.++..++.
T Consensus 252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae 330 (446)
T PF10165_consen 252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE 330 (446)
T ss_pred HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence 42 1 124566678888888877654444332 124566799999999 6999999999
Q ss_pred HHHHHhcCCHHHH
Q 039940 300 TVSNITAGNRKQI 312 (449)
Q Consensus 300 ~l~nl~~~~~~~~ 312 (449)
.+..+|..+....
T Consensus 331 llf~Lc~~d~~~~ 343 (446)
T PF10165_consen 331 LLFVLCKEDASRF 343 (446)
T ss_pred HHHHHHhhhHHHH
Confidence 9999987655433
No 110
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00043 Score=66.02 Aligned_cols=243 Identities=16% Similarity=0.131 Sum_probs=152.5
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHH
Q 039940 74 LLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALI 153 (449)
Q Consensus 74 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 153 (449)
|++|+ +-++-..++.|+.+=. ++-.. ..+|.+...|.+...-+|.+|..++..+-.... ..+ ..+-.
T Consensus 108 LQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDape 174 (948)
T KOG1058|consen 108 LQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAPE 174 (948)
T ss_pred ccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChHH
Confidence 34555 5566666666655543 33222 467888899999999999999988887743311 111 12222
Q ss_pred HHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---CCCHHHHHHHHHHHHHcccCChhHHHHH
Q 039940 154 PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH---LDDEEVLRNVCWTLSNLSDGTNDKIQAV 230 (449)
Q Consensus 154 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 230 (449)
.+-..+....|+..+++|...|...-. +.++.++...+. +-++.++...+..+...+..++....
T Consensus 175 Li~~fL~~e~DpsCkRNAFi~L~~~D~----------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-- 242 (948)
T KOG1058|consen 175 LIESFLLTEQDPSCKRNAFLMLFTTDP----------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-- 242 (948)
T ss_pred HHHHHHHhccCchhHHHHHHHHHhcCH----------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh--
Confidence 334455567788888888766554322 244555544443 23566777777777777766554322
Q ss_pred HHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940 231 IEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK 310 (449)
Q Consensus 231 ~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 310 (449)
..+..+..+|.+.++.++-+|...+..++.. +..... ....++.++.+..|..++--...-|..+......
T Consensus 243 ---~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~ 313 (948)
T KOG1058|consen 243 ---RYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEK 313 (948)
T ss_pred ---HHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH
Confidence 5678889999999999999998888877764 322221 2345555655443556666555556666433322
Q ss_pred HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHH
Q 039940 311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQI 355 (449)
Q Consensus 311 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 355 (449)
. . .|.+-.++++|+.++.+++..+......++.+.+-+..
T Consensus 314 i----l-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvedi 353 (948)
T KOG1058|consen 314 I----L-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDI 353 (948)
T ss_pred H----H-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHH
Confidence 1 2 24666778888888999999998888888876554443
No 111
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.25 E-value=2.2e-05 Score=67.35 Aligned_cols=189 Identities=17% Similarity=0.118 Sum_probs=122.0
Q ss_pred cCCCHHHHHHHHHHHHHcccCC--hhHHHHHHHh--CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCC
Q 039940 202 HLDDEEVLRNVCWTLSNLSDGT--NDKIQAVIEA--GVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGA 277 (449)
Q Consensus 202 ~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~--~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 277 (449)
.+.|.+.+..++..|..+..++ ......+.+. .++..+...+.+....+...||.++..++........... ..+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHH
Confidence 4568899999999998887665 2222222221 5667788888888888999999999999876444444333 347
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCC--HHHH
Q 039940 278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGT--QEQI 355 (449)
Q Consensus 278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~~~ 355 (449)
++.|++.+.++ ...++..|..+|..++...+... .+ .++.+.....+.++.+|..++..+..++.... ....
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~-~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP-KI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH-HH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 88999999988 88899999999999988654111 11 15566677788899999999999999988644 1111
Q ss_pred H-HHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 039940 356 K-YLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKK 397 (449)
Q Consensus 356 ~-~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 397 (449)
. ...-..+++.+..++.+.++++|..+-.++..+.+..+...
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 1 11113368889999999999999999999999988776643
No 112
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.22 E-value=0.00039 Score=63.59 Aligned_cols=215 Identities=23% Similarity=0.297 Sum_probs=153.8
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940 65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN 144 (449)
Q Consensus 65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 144 (449)
..++.+.+.+.+++ ..++..|.+.++.+... ..++.+..++.+.++.+|..+..+|+.+- .
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~----- 103 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--D----- 103 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--C-----
Confidence 45888999999997 89999999997776641 35899999999999999999999888761 1
Q ss_pred hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCH------------HHHHHH
Q 039940 145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDE------------EVLRNV 212 (449)
Q Consensus 145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~------------~~~~~~ 212 (449)
...++.++..+..+.+..++..+.++|..+-.. ..+..++..+.++.. .++..+
T Consensus 104 ----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 ----PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 225678888885578999999999999987766 336666666666542 234444
Q ss_pred HHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchh
Q 039940 213 CWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKS 292 (449)
Q Consensus 213 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 292 (449)
...+..+-. ...++.+...+.+....++..+..+++.+...+ ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 444443321 134577777888888888888888888877653 23456777788887 888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHH
Q 039940 293 IKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAIS 344 (449)
Q Consensus 293 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~ 344 (449)
+|..++.+++.+-... ..+.+...+.+.+..++..+..++.
T Consensus 229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 229 VRKAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHhc
Confidence 8888888888773321 3455666666666666665555554
No 113
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.22 E-value=8.1e-05 Score=74.33 Aligned_cols=295 Identities=18% Similarity=0.148 Sum_probs=184.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhc---CCCchh
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA---HSPGCR 143 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~---~~~~~~ 143 (449)
++.+...++.-...+.+..|+..|..++.-..+. ..-.-++|+++.++.++...+|..|+.+|..+.. +-|..-
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 5555556665444688899999999988722111 1112468999999999999999999999888763 223332
Q ss_pred hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHH-----HHHhhcCCCHHHHHHHHHHHHH
Q 039940 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPA-----LAQLIHLDDEEVLRNVCWTLSN 218 (449)
Q Consensus 144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~-----l~~ll~~~~~~~~~~~~~~l~~ 218 (449)
..+...-.+|.|-.++.++....++..-+.+|..|+... ..++.. ...+++..+.+ .
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA--------~rFle~~q~~~~~g~~n~~nse----------t 562 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA--------YRFLELTQELRQAGMLNDPNSE----------T 562 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH--------HHHHHHHHHHHhcccccCcccc----------c
Confidence 333334455555555533344556666666677666542 011111 11112222222 0
Q ss_pred ccc-CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHH
Q 039940 219 LSD-GTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKES 297 (449)
Q Consensus 219 l~~-~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a 297 (449)
... ......+.+.+ ++-+....++.++++-|+..-+..|.-||...... --+.-+++.|+..|.+. |..+|..-
T Consensus 563 ~~~~~~~~~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDk-Dw~LR~aF 637 (1431)
T KOG1240|consen 563 APEQNYNTELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDK-DWRLRGAF 637 (1431)
T ss_pred ccccccchHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCc-cHHHHHHH
Confidence 111 11111222222 45566777888888888888888888887542211 11234788999999999 99888776
Q ss_pred HHHHHHHhc--CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC
Q 039940 298 CWTVSNITA--GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD 375 (449)
Q Consensus 298 ~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 375 (449)
...+.-++. +-. -++.+++|.|..-+.+..+.|...|+.+|..|+..+- .+...-.+.++-..-++-.++
T Consensus 638 fdsI~gvsi~VG~r-----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l---l~K~~v~~i~~~v~PlL~hPN 709 (1431)
T KOG1240|consen 638 FDSIVGVSIFVGWR-----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL---LRKPAVKDILQDVLPLLCHPN 709 (1431)
T ss_pred HhhccceEEEEeee-----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc---cchHHHHHHHHhhhhheeCch
Confidence 666665543 211 1234688999999999999999999999999998642 111111224555556677899
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 039940 376 PEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 376 ~~~~~~~~~~l~~l~~~~~~ 395 (449)
.-+|..++..+..+.+.-..
T Consensus 710 ~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 710 LWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999999998887765544
No 114
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.0024 Score=63.06 Aligned_cols=342 Identities=18% Similarity=0.142 Sum_probs=201.6
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc------CC-CCHHHHHHHHHHHHHhcC---CChhhhHHHHhCCCh
Q 039940 41 EAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLL------RE-DYPRLQFEAAWVLTNIAS---GTSVNTKVLIDHGAV 110 (449)
Q Consensus 41 ~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~------~~-~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i 110 (449)
.|...+..++++.+.+.. .|+++.+++.+. .+ +++.-+.-|++++++++. ..+..+ -.++.=++
T Consensus 391 Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv 464 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHH
Confidence 455566666655423322 355777777776 22 235667778888888875 111111 12222235
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC---Ch
Q 039940 111 PIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP---PF 187 (449)
Q Consensus 111 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~---~~ 187 (449)
+.+...++++.-.+|..|+|+++.++..+- ++...-..++....+.+.++.+-.|+..|+.+|..+..+.+.. ..
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 666667788889999999999999985432 2222223456667777766788889999999999999887433 23
Q ss_pred hhhhchHHHHHHhhcCCCHHHHHHHHHHHH-HcccCChhHHHHHHHhCcHHHHHHhhCC---CCCc---chhhHHHHHHH
Q 039940 188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLS-NLSDGTNDKIQAVIEAGVCGPLVELLGH---PSPS---VLIPALRTVGN 260 (449)
Q Consensus 188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~L~~ll~~---~~~~---v~~~a~~~l~~ 260 (449)
..+.+.++.++++.+.-+.+....++..+. ..+..-......+.+ .+...+.+++.+ .++. -...|.++|.-
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 334666677777776655555555544332 222221111121222 455666677764 2222 23334444443
Q ss_pred hhc------CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchh
Q 039940 261 IVT------GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFD 334 (449)
Q Consensus 261 l~~------~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~ 334 (449)
+.+ ..++..+ -++..+++.+-.++++. -.++-.+++..+.+++...++.-..+++ +++.+.+.+.....+
T Consensus 622 i~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~d 697 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLK-QLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGID 697 (1010)
T ss_pred HHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHH
Confidence 321 1121211 22445666777777777 6778888888888887654443333343 788888888888888
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHH-HcCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhhhh
Q 039940 335 IKKEAAWAISNATKAGTQEQIKYLV-REGCIKPLCDLLLCA--DPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 335 v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~~~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~ 395 (449)
.-...+-+|.|.+..|.+...+.-. ..-....+..++.++ ...=...|++++..++-.+..
T Consensus 698 yf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg 761 (1010)
T KOG1991|consen 698 YFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG 761 (1010)
T ss_pred HHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 8888999999999887654332110 111233444455553 223356677888877766554
No 115
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.001 Score=59.54 Aligned_cols=224 Identities=16% Similarity=0.101 Sum_probs=163.7
Q ss_pred hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC---------hhHHHHHHHhCcHHHHHHhhCCCCCcch------h
Q 039940 188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT---------NDKIQAVIEAGVCGPLVELLGHPSPSVL------I 252 (449)
Q Consensus 188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~---------~~~~~~~~~~~~~~~L~~ll~~~~~~v~------~ 252 (449)
...-++++.++.+|.++|.++...++..+..+...+ ...+..+++.++++.|+..+..-+..+. .
T Consensus 121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~ 200 (536)
T KOG2734|consen 121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH 200 (536)
T ss_pred HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence 334688999999999999999999999998887432 1345677788999999998876544444 4
Q ss_pred hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc-
Q 039940 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN-HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD- 330 (449)
Q Consensus 253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~- 330 (449)
.++..+-|+....+.....+.+.|.+.+|+.-+... .-...+..|.-.++-+...+.+....+-+-+++..+++-+.-
T Consensus 201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y 280 (536)
T KOG2734|consen 201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY 280 (536)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence 467788888888888888888889999988854332 245567778888888877666666666677888888876632
Q ss_pred --C------chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 039940 331 --A------EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGST 402 (449)
Q Consensus 331 --~------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 402 (449)
. ..+..++...+|+.+... ++.+..|....+++...-+++. ....+..++++|...+...+..
T Consensus 281 k~~dP~~~~E~EmmeNLFdcLCs~lm~--~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt------ 351 (536)
T KOG2734|consen 281 KRHDPATVDEEEMMENLFDCLCSLLMA--PANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT------ 351 (536)
T ss_pred hccCCCCcCHHHHHHHHHHHHHHHhcC--hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch------
Confidence 1 346778888999988884 5778888877777665555554 4445677888888777655432
Q ss_pred CCcccHHHHHHHhcchHHHHHHH
Q 039940 403 IGDVNQYARLVEGAEGFKKIEDL 425 (449)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~l 425 (449)
+++..|.+.+|+..+-.+
T Consensus 352 -----~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 352 -----PNCNKFVEILGLRTIFPL 369 (536)
T ss_pred -----HHHHHHHHHHhHHHHHHH
Confidence 357888888887777555
No 116
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0013 Score=58.99 Aligned_cols=228 Identities=14% Similarity=0.147 Sum_probs=161.8
Q ss_pred CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC-----h----hhhHHHHhCCChHHHHHhhCCCC-----
Q 039940 56 LPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT-----S----VNTKVLIDHGAVPIFVKLLASPS----- 121 (449)
Q Consensus 56 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-----~----~~~~~~~~~~~i~~L~~~l~~~~----- 121 (449)
+-...+++.++++.|+.+|.+.+ .++....+..+..+...+ . .-.+.+++.++++.|++.+..-+
T Consensus 116 dLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvke 194 (536)
T KOG2734|consen 116 DLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKE 194 (536)
T ss_pred HHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchh
Confidence 44457789999999999999999 799999999999998733 1 23466778899999999886422
Q ss_pred -hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccc-ccHHHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHH
Q 039940 122 -DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH-ARLSMLRIGTWTLSNLCKGKP-QPPFDQVRPVLPALA 198 (449)
Q Consensus 122 -~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~ 198 (449)
..-..+++..+-|+....+.+...+.+.|.+..++..+... .-..-..++..+++-+..+.. +......-.++..++
T Consensus 195 ea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL 274 (536)
T KOG2734|consen 195 EADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLL 274 (536)
T ss_pred hhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHH
Confidence 23445678888999988888888888889898888866332 334456677777777776653 333333334555555
Q ss_pred Hhhc----CC-----CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh--h
Q 039940 199 QLIH----LD-----DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD--F 267 (449)
Q Consensus 199 ~ll~----~~-----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~--~ 267 (449)
+-+. ++ ..+..++...||+.+......+ ..+....+++...-+++. ....+..++.+|-....+.+ .
T Consensus 275 ~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~ 352 (536)
T KOG2734|consen 275 RQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTP 352 (536)
T ss_pred hhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchH
Confidence 5443 21 2566777888888877665544 446666777777767665 45567789999988888765 5
Q ss_pred hHHHHHhcCCHHHHHHHhc
Q 039940 268 QTQCVINHGAVPYLLALLI 286 (449)
Q Consensus 268 ~~~~~~~~~~l~~L~~ll~ 286 (449)
.+..+++..++..++.+.-
T Consensus 353 ~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 353 NCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHHHhHHHHHHHHh
Confidence 6667777777777776654
No 117
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0028 Score=60.25 Aligned_cols=302 Identities=13% Similarity=0.086 Sum_probs=175.0
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhh
Q 039940 69 RFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLH 148 (449)
Q Consensus 69 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 148 (449)
.-+.+|.++.+++-+ -.-..+.-+...+.+..+. ++..+..=|.+.|+....-|+.+++|+-+. +.+..+.
T Consensus 78 EaV~LLss~kysEKq-IGYl~is~L~n~n~dl~kl-----vin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~- 148 (938)
T KOG1077|consen 78 EAVNLLSSNKYSEKQ-IGYLFISLLLNENSDLMKL-----VINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA- 148 (938)
T ss_pred HHHHHhhcCCccHHH-HhHHHHHHHHhcchHHHHH-----HHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh-
Confidence 345666666543322 2222333333333333322 245566666678888888999999998432 2222221
Q ss_pred cCCHHHHHHHHcc-cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHH
Q 039940 149 EEALIPLLAQLNE-HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKI 227 (449)
Q Consensus 149 ~~~i~~l~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 227 (449)
.-++ ++|.. +...-++..++.|+..|.+..|+. ....+-...++++|...+-.+...+...+..++...++..
T Consensus 149 -~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl--~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y 222 (938)
T KOG1077|consen 149 -DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL--VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY 222 (938)
T ss_pred -hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH
Confidence 1233 44433 334567888888999888875432 2334567788999998888888888888888887766543
Q ss_pred HHHHHhCcHHHHHHhhC-------------CCCCcchhhHHHHHHHhhcCChhh-HHHHHhcCCHHHHHHHhccCC-c--
Q 039940 228 QAVIEAGVCGPLVELLG-------------HPSPSVLIPALRTVGNIVTGDDFQ-TQCVINHGAVPYLLALLINNH-K-- 290 (449)
Q Consensus 228 ~~~~~~~~~~~L~~ll~-------------~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~~-~-- 290 (449)
...+. ..+..|..+.. -+.|-+...+++.|.+.-...+.. +..+. .+++.++....... .
T Consensus 223 k~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~ 299 (938)
T KOG1077|consen 223 KTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKK 299 (938)
T ss_pred hhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccc
Confidence 32221 11122222211 145667777888887774332222 21111 13333333333110 1
Q ss_pred ---hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHH
Q 039940 291 ---KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPL 367 (449)
Q Consensus 291 ---~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L 367 (449)
...+....+-..+++.+-+..-..+. ..+..|..++.+.++.+|--|+..++.++... .-...+... .+.+
T Consensus 300 vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~--~s~davK~h--~d~I 373 (938)
T KOG1077|consen 300 VQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSE--FSIDAVKKH--QDTI 373 (938)
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhcc--chHHHHHHH--HHHH
Confidence 12333344445555543221111222 36778899999999999999999999998863 222222222 6778
Q ss_pred Hhhcc-CCCHHHHHHHHHHHHHHHHhhh
Q 039940 368 CDLLL-CADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 368 ~~ll~-~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
+..|+ .+|..++.++++.|+.++....
T Consensus 374 i~sLkterDvSirrravDLLY~mcD~~N 401 (938)
T KOG1077|consen 374 INSLKTERDVSIRRRAVDLLYAMCDVSN 401 (938)
T ss_pred HHHhccccchHHHHHHHHHHHHHhchhh
Confidence 88888 6799999999999999997653
No 118
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=0.00075 Score=66.48 Aligned_cols=349 Identities=15% Similarity=0.100 Sum_probs=212.0
Q ss_pred hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHH---------
Q 039940 18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAW--------- 88 (449)
Q Consensus 18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~--------- 88 (449)
....+.++.+.++..++...+++.|...+..+...-..+ . -....+.+.+++..++++ ..++.....
T Consensus 272 ~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~-~--d~~~~~~~~l~~~~~d~~-~~v~~~~~~~~~~L~~~~ 347 (759)
T KOG0211|consen 272 IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD-D--DVVKSLTESLVQAVEDGS-WRVSYMVADKFSELSSAV 347 (759)
T ss_pred HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc-h--hhhhhhhHHHHHHhcChh-HHHHHHHhhhhhhHHHHh
Confidence 344567777777777777777777777666665433222 1 112233455555555544 233332222
Q ss_pred ------------------------------HHHHhcC-CChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhc
Q 039940 89 ------------------------------VLTNIAS-GTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA 137 (449)
Q Consensus 89 ------------------------------~L~~l~~-~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 137 (449)
-...++. .+.+....+....++|.+-.+..+.+..++...+.....+.-
T Consensus 348 ~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p 427 (759)
T KOG0211|consen 348 GPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSP 427 (759)
T ss_pred ccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCc
Confidence 2222221 111112223334456666667777777777766655555432
Q ss_pred CCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHH
Q 039940 138 HSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTL 216 (449)
Q Consensus 138 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l 216 (449)
..+. .-.-....+.++..+ ++.++.++.+..+.+..+-.... ..........+|.+..+-......++...++.+
T Consensus 428 ~~~k---~~ti~~llp~~~~~l-~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~i 503 (759)
T KOG0211|consen 428 ILPK---ERTISELLPLLIGNL-KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYI 503 (759)
T ss_pred cCCc---CcCccccChhhhhhc-chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHH
Confidence 2221 111122344555555 77889999999987766554432 223334467788888887767788899999888
Q ss_pred HHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940 217 SNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKE 296 (449)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 296 (449)
..++.... ..+++...-+.+...+.+...+++..|...+..++..... .-.....++.++.....+ +...|..
T Consensus 504 p~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~---~w~~~~~i~k~L~~~~q~-~y~~R~t 576 (759)
T KOG0211|consen 504 PQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS---EWARLEEIPKLLAMDLQD-NYLVRMT 576 (759)
T ss_pred HHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc---chhHHHhhHHHHHHhcCc-ccchhhH
Confidence 88775543 2234444555555556666778999998888887754331 111234677777777766 6778888
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC
Q 039940 297 SCWTVSNITA--GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA 374 (449)
Q Consensus 297 a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~ 374 (449)
.+.++.-++. +. .+....++|.+.++..+..+.||..++..|..+...-....+ +..+.+.+..+.++.
T Consensus 577 ~l~si~~la~v~g~-----ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~----~~~v~pll~~L~~d~ 647 (759)
T KOG0211|consen 577 TLFSIHELAEVLGQ-----EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR----DEEVLPLLETLSSDQ 647 (759)
T ss_pred HHHHHHHHHHHhcc-----HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH----HHHHHHHHHHhccCc
Confidence 8888887765 33 233345788999999999999999999999998875443332 333556666666777
Q ss_pred CHHHHHHHHHHHHHHH
Q 039940 375 DPEIVTVCLKGLENIL 390 (449)
Q Consensus 375 ~~~~~~~~~~~l~~l~ 390 (449)
+.+++..+..++..+.
T Consensus 648 ~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 648 ELDVRYRAILAFGSIE 663 (759)
T ss_pred ccchhHHHHHHHHHHH
Confidence 7777777766665544
No 119
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.11 E-value=4.3e-05 Score=65.57 Aligned_cols=189 Identities=16% Similarity=0.125 Sum_probs=119.0
Q ss_pred cCCCHHHHHHHHHHHHHHhccC-CCCcHHHHHH--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCC
Q 039940 32 WSDDNSMQLEAATQFRRLLSIE-RSLPIDEVIQ--AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHG 108 (449)
Q Consensus 32 ~s~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 108 (449)
.+.+++.+..|+..|..++.+. .......+.. ..++..+...+.+.. ..+...|+.++..++........... ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 5688999999999999998765 1222232221 155667777777776 68889999999998874333333332 25
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCC-CC-
Q 039940 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ-PP- 186 (449)
Q Consensus 109 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~- 186 (449)
++|.|++.+.+....+++.|..+|..++...+.... .+..++.....+.++.++..++..+..+....+. ..
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 689999999999999999999999999876541111 2123444344788999999999999988877651 11
Q ss_pred h---hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHH
Q 039940 187 F---DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQ 228 (449)
Q Consensus 187 ~---~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~ 228 (449)
. .....+.+.+..++.+.++++|..+-.++..+...-++...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 1 12356888999999999999999999999888766555444
No 120
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.07 E-value=7.4e-06 Score=52.21 Aligned_cols=55 Identities=25% Similarity=0.591 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 039940 291 KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNA 346 (449)
Q Consensus 291 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 346 (449)
+.+|..|+++|++++...++....... .+++.|+.++.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998877776666443 6999999999999899999999999875
No 121
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.005 Score=62.17 Aligned_cols=238 Identities=11% Similarity=0.029 Sum_probs=148.1
Q ss_pred HHHHHHcccccHHHHHHHHHHHHHhhcCCCCC--ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH
Q 039940 154 PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP--PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI 231 (449)
Q Consensus 154 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 231 (449)
.+.....++.+..++..+...|..++..++.. .......+...+..-+++.....+...+.|+..+....+.....++
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34445546668899999999999999884221 1222344555566666666778888888899888876652222233
Q ss_pred HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC-------ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHH
Q 039940 232 EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG-------DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNI 304 (449)
Q Consensus 232 ~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~-------~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl 304 (449)
...+.+.++.+ +..+...+..+..+|-.++.. ++. ....+ ..++..+...+... ...+......++..+
T Consensus 737 ~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~l-nefl~~Isagl~gd-~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 737 PKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAIL-NEFLSIISAGLVGD-STRVVASDIVAITHI 812 (1176)
T ss_pred HHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHH-HHHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence 33344444444 778888888888888877731 111 01111 12333333333333 333333324455544
Q ss_pred hcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHH
Q 039940 305 TAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLK 384 (449)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~ 384 (449)
..........-.-.+++..+...|.+++++++..|...+.-++..-.........+ .+++.+..+.++...+++.++-.
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~-~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLE-ELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHH-HHHHHHHHHHHhhhHHHHHHHHH
Confidence 43111111111112466677777888999999999999999998755554444332 37888999888889999999999
Q ss_pred HHHHHHHhhhhh
Q 039940 385 GLENILKVGEAK 396 (449)
Q Consensus 385 ~l~~l~~~~~~~ 396 (449)
.+..|++...-.
T Consensus 892 LlekLirkfg~~ 903 (1176)
T KOG1248|consen 892 LLEKLIRKFGAE 903 (1176)
T ss_pred HHHHHHHHhCHH
Confidence 999999876543
No 122
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00052 Score=63.48 Aligned_cols=289 Identities=13% Similarity=0.065 Sum_probs=169.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh
Q 039940 68 PRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL 147 (449)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 147 (449)
|.|-..+.+.- +.+...+++.++.++..+ ....+++ ..+..|-.+|.+.....|-.|+++|..++...|.....+
T Consensus 267 pfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc- 341 (898)
T COG5240 267 PFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC- 341 (898)
T ss_pred HHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec-
Confidence 44444555555 688889999988887643 1222222 347888888999999999999999999998877632221
Q ss_pred hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHH
Q 039940 148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKI 227 (449)
Q Consensus 148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 227 (449)
+ +.+-.++ .+.+..+ +.+++..|......... ...+..+..++++-....+.-++.++..++-.-+...
T Consensus 342 --N--~evEsLI-sd~Nr~I---styAITtLLKTGt~e~i---drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~ 410 (898)
T COG5240 342 --N--KEVESLI-SDENRTI---STYAITTLLKTGTEETI---DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK 410 (898)
T ss_pred --C--hhHHHHh-hcccccc---hHHHHHHHHHcCchhhH---HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH
Confidence 1 1222233 4444443 34445555555433222 2334444444443333333334444444444434333
Q ss_pred HHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 228 QAVIEAGVCGPLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 228 ~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
.. .+..|...|. .+..+.+..+..++..+....++.++. ++..|...+.+. +..+-+...|+-+..
T Consensus 411 ~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDc---ey~~I~vrIL~iLG~ 477 (898)
T COG5240 411 LS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDC---EYHQITVRILGILGR 477 (898)
T ss_pred HH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhc---chhHHHHHHHHHhcc
Confidence 32 3444555443 456678888888888888776665543 455677777655 233344455555543
Q ss_pred CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHH
Q 039940 307 GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGL 386 (449)
Q Consensus 307 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l 386 (449)
..|... --...+..+.+-+--++..+|..|..||..++...+.. +..+.+...|.+++.+.|.++|..|..++
T Consensus 478 EgP~a~---~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~----~~~~sv~~~lkRclnD~DdeVRdrAsf~l 550 (898)
T COG5240 478 EGPRAK---TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV----VSPQSVENALKRCLNDQDDEVRDRASFLL 550 (898)
T ss_pred cCCCCC---CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc----ccHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 211100 00013444455555567799999999999888754322 12333566788899999999999999999
Q ss_pred HHHHHh
Q 039940 387 ENILKV 392 (449)
Q Consensus 387 ~~l~~~ 392 (449)
.++-..
T Consensus 551 ~~~~~~ 556 (898)
T COG5240 551 RNMRLS 556 (898)
T ss_pred Hhhhhh
Confidence 877643
No 123
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.0082 Score=58.97 Aligned_cols=103 Identities=15% Similarity=0.064 Sum_probs=80.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 146 (449)
++.+.+=+++++ +.+|..|++.++.+=. ++... .+++.+.+++.++++.+|..|+-++.++-+-++. ..
T Consensus 94 vNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~ 162 (757)
T COG5096 94 VNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LY 162 (757)
T ss_pred HHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hh
Confidence 556666678888 8999999999887654 23222 3578999999999999999999999999766543 45
Q ss_pred hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940 147 LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181 (449)
Q Consensus 147 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 181 (449)
.+.|.+..+..++ .++++.+..+|+.++..+...
T Consensus 163 ~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 163 HELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 5666666666666 889999999999999988766
No 124
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.02 E-value=4.7e-05 Score=54.42 Aligned_cols=94 Identities=20% Similarity=0.343 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC
Q 039940 294 KKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC 373 (449)
Q Consensus 294 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~ 373 (449)
|+.+..+|+.++.+-+.......+ .++++++..+.+++..||..|+.+|.|++.....+....+-+ +++.|..+..+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcC
Confidence 667778888887654444444444 589999999999999999999999999998754444444333 78899999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 039940 374 ADPEIVTVCLKGLENILK 391 (449)
Q Consensus 374 ~~~~~~~~~~~~l~~l~~ 391 (449)
.|+.|+..| +.|.++++
T Consensus 80 ~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CchhHHHHH-HHHHHHhc
Confidence 999987666 67776654
No 125
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.99 E-value=4.5e-05 Score=68.67 Aligned_cols=304 Identities=13% Similarity=0.109 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHh-----cCCCchhhhHhhcCCHHHH
Q 039940 81 RLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIV-----AHSPGCRNLVLHEEALIPL 155 (449)
Q Consensus 81 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~-----~~~~~~~~~~~~~~~i~~l 155 (449)
-++..+..+|.-++.+..-.+..++ .....+...+....+.++..+..++..+- .+.|+.-+.-...+.+..+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 4556666666666653332222222 23456666677788999999998888774 2333332222222322221
Q ss_pred H------HHHcccccHHHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHH
Q 039940 156 L------AQLNEHARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQ 228 (449)
Q Consensus 156 ~------~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~ 228 (449)
. ....++..+..+...|.++.++.... ..-........+.++.-+-++.+.-++..+++++.-+.-++.....
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 1 11113334556677788888776554 1111111111122222222334455677888888777766655555
Q ss_pred HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC----Chh---hHHHHHhcCCHHHHHHHh--ccCCchhHHHHHHH
Q 039940 229 AVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG----DDF---QTQCVINHGAVPYLLALL--INNHKKSIKKESCW 299 (449)
Q Consensus 229 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~----~~~---~~~~~~~~~~l~~L~~ll--~~~~~~~v~~~a~~ 299 (449)
...-......+...+.+..-..+..+.|.++|++.. -+. ..+.+. .-.+..++..- .+..+.+|+..|..
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 555556677777777777778899999999999642 111 222221 11233333322 12215679999999
Q ss_pred HHHHHhcCCH----HHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-C
Q 039940 300 TVSNITAGNR----KQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-A 374 (449)
Q Consensus 300 ~l~nl~~~~~----~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~ 374 (449)
+|+|+..--. -....+.+......+-...-.+..+|+-+||.+++|+..+..-.....=+...+++.|+.++.+ .
T Consensus 507 aLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~ 586 (728)
T KOG4535|consen 507 ALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK 586 (728)
T ss_pred HHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence 9999864110 0111111211111122222334789999999999999986311110000112246666666654 4
Q ss_pred CHHHHHHHHHHHH
Q 039940 375 DPEIVTVCLKGLE 387 (449)
Q Consensus 375 ~~~~~~~~~~~l~ 387 (449)
|-+++..|..+|.
T Consensus 587 NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 587 NFKVRIRAAAALS 599 (728)
T ss_pred cceEeehhhhhhc
Confidence 5566666666654
No 126
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.97 E-value=3.1e-05 Score=55.15 Aligned_cols=87 Identities=28% Similarity=0.416 Sum_probs=69.5
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhh
Q 039940 67 VPRFVEFL-LREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNL 145 (449)
Q Consensus 67 i~~L~~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 145 (449)
+|.|++.+ ++++ +.++..|+++|+++.. + ..++.|..+++++++.+|..++++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899988 6666 8999999999995532 2 34899999999999999999999999872
Q ss_pred HhhcCCHHHHHHHHcccccHHHHHHHHHHHH
Q 039940 146 VLHEEALIPLLAQLNEHARLSMLRIGTWTLS 176 (449)
Q Consensus 146 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~ 176 (449)
....++.+.+.+.++.+..++..++++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23377889998966667778888888774
No 127
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.0061 Score=60.95 Aligned_cols=232 Identities=13% Similarity=0.135 Sum_probs=151.6
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh
Q 039940 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF 187 (449)
Q Consensus 108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 187 (449)
.++..|++.+++.+..+|..|+..++.++...|. .+...++...+.++....++..-..+|.+|..++..+ -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 4677788888889999999999999999988772 2233466677776655556777788999999999886 2222
Q ss_pred hhhhchHHHHHHhhcC--------CCHHHHHHHHHHHHHcccCChhH-HHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 188 DQVRPVLPALAQLIHL--------DDEEVLRNVCWTLSNLSDGTNDK-IQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 188 ~~~~~~l~~l~~ll~~--------~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
.....++|.+.+.+.- ....+|..++..++.+++..... .+.+.+.=....+...+-+++-..|..|..++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 3346788888877753 24678888888888877654322 22222222223344455667777788777776
Q ss_pred HHhhcC--Ch-hh----------------------HHHHH-hcCCHHHHHHH-----hccCCchhHHHHHHHHHHHHhcC
Q 039940 259 GNIVTG--DD-FQ----------------------TQCVI-NHGAVPYLLAL-----LINNHKKSIKKESCWTVSNITAG 307 (449)
Q Consensus 259 ~~l~~~--~~-~~----------------------~~~~~-~~~~l~~L~~l-----l~~~~~~~v~~~a~~~l~nl~~~ 307 (449)
-...-. +- .. ...+. -.+....++.- +.+- |..+|+.++++|.+++..
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW-d~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW-DVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHh
Confidence 544321 10 00 00011 11223333333 3445 889999999999998765
Q ss_pred CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 308 NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 308 ~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
.++. ...+.++.+++.....+...+.-+..+.+.++..
T Consensus 575 ~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 575 EPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred hHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 5542 3447889999998888888888777777766654
No 128
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.023 Score=57.11 Aligned_cols=343 Identities=13% Similarity=0.128 Sum_probs=187.6
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
..++.+...+++.|..++..|+..+.++.+.. + . -....++...++++...+.+..=..|+-+|+.++...----
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rl--p-~--~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRL--P-P--ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccC--c-H--HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 45666777778889999999999999998764 2 1 12223456666655544434555678889999887321111
Q ss_pred HHHHhCCChHHHHHhhCC--------CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc----ccccHHHHH
Q 039940 102 KVLIDHGAVPIFVKLLAS--------PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN----EHARLSMLR 169 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~~~~~~~~~ 169 (449)
..+ ..++|.+++.+.- ....+|..|+.+++.+++..... .+ .+.+..+...+. -+.+...++
T Consensus 416 s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~--~l--~p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 416 SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS--DL--KPVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh--hh--hHHHHHHHHHHHHHHhcCchhhHhH
Confidence 111 1356777776642 34789999999999998654221 11 112333333221 355677899
Q ss_pred HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHH-hhCCCCC
Q 039940 170 IGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE-LLGHPSP 248 (449)
Q Consensus 170 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~ 248 (449)
.|..++-......++.. .+++.+. ..+--....+.++-..+..-....+.....++ ..++. -+.+=+.
T Consensus 490 AAsAAlqE~VGR~~n~p-----~Gi~Lis-~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f-----~~L~t~Kv~HWd~ 558 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFP-----HGISLIS-TIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF-----NHLLTKKVCHWDV 558 (1133)
T ss_pred HHHHHHHHHhccCCCCC-----Cchhhhh-hcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH-----HHHHhcccccccH
Confidence 99888887766542221 1222111 11111122233333333222222222222222 22222 1444567
Q ss_pred cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH---HHHHHHH---CC---
Q 039940 249 SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK---QIQAVID---AG--- 319 (449)
Q Consensus 249 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~---~~~~l~~---~~--- 319 (449)
.+++.+.++|.+++...++ ....+.+++++....++ +...+.....+.+.++..... ....+.+ ++
T Consensus 559 ~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ 633 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLS 633 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhh
Confidence 7999999999998765443 34457888888888888 877777766666666542110 1111111 12
Q ss_pred ChHHHHHHh-hcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940 320 LIVPLVNLL-QDA-EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 320 ~~~~L~~ll-~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 393 (449)
+++.+.... ..+ ..-++...+..+.++.... ......++-.+.-..+.+.+...+ .++..+.+++..++...
T Consensus 634 ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~-~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y 707 (1133)
T KOG1943|consen 634 IIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK-DRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTY 707 (1133)
T ss_pred hccHHHHHHhccchHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHH
Confidence 234443332 222 3456666677777777653 333333333334445555554444 67778888877776543
No 129
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.91 E-value=0.0038 Score=61.06 Aligned_cols=315 Identities=11% Similarity=0.066 Sum_probs=188.9
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHH
Q 039940 26 AMVAGVW-SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVL 104 (449)
Q Consensus 26 ~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 104 (449)
.+...+. ++-|.....+.+.+..+.+.. .-...+. .-++...+..+.-...+-++..|+++++..+. +... .-
T Consensus 453 ~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl-~~ 526 (1005)
T KOG2274|consen 453 MIDNGLVYQESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVL-LS 526 (1005)
T ss_pred HHHhhcccccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceec-cc
Confidence 3344443 456777778888888776531 1111111 11244445555544446788888888888874 1111 11
Q ss_pred HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc-ccccHHHHHHHHHHHHHhhcCCC
Q 039940 105 IDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN-EHARLSMLRIGTWTLSNLCKGKP 183 (449)
Q Consensus 105 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~~ 183 (449)
...+++..|.++....+.++-...+.+|+..+..+|+..... +....|..+..+. .+.||.+...+-.++..++...
T Consensus 527 ~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~- 604 (1005)
T KOG2274|consen 527 LQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA- 604 (1005)
T ss_pred cchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-
Confidence 234678888888888889999999999999999998875544 5566666666654 4567877777777777777643
Q ss_pred CCChhhhhchHHHHHHhhcCCC----HHHHHHHHHHHHHcccCCh-hHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHH
Q 039940 184 QPPFDQVRPVLPALAQLIHLDD----EEVLRNVCWTLSNLSDGTN-DKIQAVIEAGVCGPLVELLGH-PSPSVLIPALRT 257 (449)
Q Consensus 184 ~~~~~~~~~~l~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~ 257 (449)
...-.+....+|.++..+..++ .....-++..|..+.++.+ ...+.++. -.+|.+.++.-+ ++.++...+-.|
T Consensus 605 ~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~Ec 683 (1005)
T KOG2274|consen 605 ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATEC 683 (1005)
T ss_pred HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHH
Confidence 2222334678999999998765 5566666777776665543 33333443 456777776544 667788899999
Q ss_pred HHHhhcCChhhHHHHHhcCCHH--HHHHHhccCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHCCChHHHHHHhhcC
Q 039940 258 VGNIVTGDDFQTQCVINHGAVP--YLLALLINNHKKSIKKESCWTVSNITA----GNRKQIQAVIDAGLIVPLVNLLQDA 331 (449)
Q Consensus 258 l~~l~~~~~~~~~~~~~~~~l~--~L~~ll~~~~~~~v~~~a~~~l~nl~~----~~~~~~~~l~~~~~~~~L~~ll~~~ 331 (449)
|..+.....++...--..++.. .++..++.=-+++.-..++..+|.+.. +-.......++.-.-..+.++...+
T Consensus 684 Lra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae 763 (1005)
T KOG2274|consen 684 LRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAE 763 (1005)
T ss_pred HHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhh
Confidence 9888876555443333332222 333333211133344444545554432 2222222211111122344444556
Q ss_pred chhHHHHHHHHHHHhhcc
Q 039940 332 EFDIKKEAAWAISNATKA 349 (449)
Q Consensus 332 ~~~v~~~a~~aL~~l~~~ 349 (449)
...+......++++++..
T Consensus 764 ~lsviQsLi~VfahL~~t 781 (1005)
T KOG2274|consen 764 TLSVIQSLIMVFAHLVHT 781 (1005)
T ss_pred hHHHHHHHHHHHHHHhhC
Confidence 788888888899998876
No 130
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.91 E-value=0.017 Score=54.38 Aligned_cols=304 Identities=17% Similarity=0.156 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHHHHhccCCCC----cHHHHHHcCCHHHHHHhhcCC----C--CHHHHHHHHHHHHHhcCCChhhh-HH
Q 039940 35 DNSMQLEAATQFRRLLSIERSL----PIDEVIQAGIVPRFVEFLLRE----D--YPRLQFEAAWVLTNIASGTSVNT-KV 103 (449)
Q Consensus 35 ~~~~~~~a~~~L~~l~~~~~~~----~~~~~~~~~~i~~L~~ll~~~----~--~~~~~~~a~~~L~~l~~~~~~~~-~~ 103 (449)
+...-...+..|..+....... ......+..+++.+.++.... . ++.+...+..++..+...-+... +.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4445555666666665543222 223344555788887765322 1 13555556666666655333322 22
Q ss_pred HHhCCChHHHHH-----hhC-CCC--hHHHHHHHHHHHHH-hcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHH
Q 039940 104 LIDHGAVPIFVK-----LLA-SPS--DDVREQAVWALGNI-VAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWT 174 (449)
Q Consensus 104 ~~~~~~i~~L~~-----~l~-~~~--~~~~~~a~~~L~~l-~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 174 (449)
+.+ .+...+.. -+. ..+ .......+..+..+ +.-++...-. .....+..++.......++..+..++.+
T Consensus 136 ~~~-~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~ 213 (415)
T PF12460_consen 136 ILD-ELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQL 213 (415)
T ss_pred HHH-HHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 221 22222220 000 111 11222222222222 2222222111 1112566777777666778888888888
Q ss_pred HHHhhcCCCCCChhhhhchHHHHHHhh-cCCC----HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCc
Q 039940 175 LSNLCKGKPQPPFDQVRPVLPALAQLI-HLDD----EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPS 249 (449)
Q Consensus 175 l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~ 249 (449)
++.+....+... .....+..+...+ ...+ ........|....+.-....... .+++.++.++.+ ++
T Consensus 214 la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~--~~ 284 (415)
T PF12460_consen 214 LASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS--PE 284 (415)
T ss_pred HHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC--hh
Confidence 888877643222 3345555555444 2223 33344444555444432222222 346677888777 66
Q ss_pred chhhHHHHHHHhhcCChh--------hHHHHHhc----CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039940 250 VLIPALRTVGNIVTGDDF--------QTQCVINH----GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID 317 (449)
Q Consensus 250 v~~~a~~~l~~l~~~~~~--------~~~~~~~~----~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~ 317 (449)
+...+...++-+....+. ..+.+.+. .++|.|++..+.. +...+.....+|+.+..+.|..+-.---
T Consensus 285 ~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl~~~l 363 (415)
T PF12460_consen 285 LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVLLPEL 363 (415)
T ss_pred hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 788888888888776332 22223332 3566777777766 6668888899999999876654322222
Q ss_pred CCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940 318 AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 318 ~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 350 (449)
..++|.+++.|..++.+++..++.+|..+....
T Consensus 364 ~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 364 PTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 458999999999999999999999999999864
No 131
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.90 E-value=7.6e-05 Score=53.09 Aligned_cols=87 Identities=22% Similarity=0.283 Sum_probs=70.0
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH
Q 039940 152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI 231 (449)
Q Consensus 152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 231 (449)
++.+++.+.+++++.++..+++++..+- ....++.+..++.++++.++..++++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 4678888878899999999999999432 2378999999999999999999999999873
Q ss_pred HhCcHHHHHHhhCCCCCc-chhhHHHHHH
Q 039940 232 EAGVCGPLVELLGHPSPS-VLIPALRTVG 259 (449)
Q Consensus 232 ~~~~~~~L~~ll~~~~~~-v~~~a~~~l~ 259 (449)
....++.|..++.+++.. ++..|+.+|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 124778999989886554 5888888774
No 132
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.011 Score=58.58 Aligned_cols=299 Identities=10% Similarity=0.090 Sum_probs=166.2
Q ss_pred HHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhC------C--CChHHHHHHHHHHHHHhc---CCCchhhhHhhcCCHH
Q 039940 85 EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLA------S--PSDDVREQAVWALGNIVA---HSPGCRNLVLHEEALI 153 (449)
Q Consensus 85 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~------~--~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~ 153 (449)
+|..++..++... .+-.-.++++.+++.+. . .++.-.+.|+.++++++. ....+++.+ +.-.++
T Consensus 391 Aa~~~l~~~~~KR----~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~ 465 (1010)
T KOG1991|consen 391 AALDFLTTLVSKR----GKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVN 465 (1010)
T ss_pred HHHHHHHHHHHhc----chhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHH
Confidence 5666666666522 11122356777777776 2 346777889999999873 122222322 333445
Q ss_pred HHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940 154 PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIE 232 (449)
Q Consensus 154 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 232 (449)
.++..+ +++.--++..|||++..++..+ .........++....+.+. +++-.++..+..+|..+..+.......+..
T Consensus 466 hVfP~f-~s~~g~Lrarac~vl~~~~~~d-f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 466 HVFPEF-QSPYGYLRARACWVLSQFSSID-FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred HhhHhh-cCchhHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 555555 6777789999999999999664 3344445677777778887 667889999999999888776543221221
Q ss_pred h--CcHHHHHHhhCCCCCcchhhHHHHH-HHhhcCChhhHHHHHhcCCHHHHHHHhcc---C--CchhHHHHHHHHHHHH
Q 039940 233 A--GVCGPLVELLGHPSPSVLIPALRTV-GNIVTGDDFQTQCVINHGAVPYLLALLIN---N--HKKSIKKESCWTVSNI 304 (449)
Q Consensus 233 ~--~~~~~L~~ll~~~~~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~--~~~~v~~~a~~~l~nl 304 (449)
. +.++.|+.+.+..+.+....++..+ +..+..-......+ -..+.....+++.. . .+.+-...|.++|..+
T Consensus 544 hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL-~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti 622 (1010)
T KOG1991|consen 544 HVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVEL-CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTI 622 (1010)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH
Confidence 1 5566777777665555444444433 22221111111111 12345556666653 1 0222333455555544
Q ss_pred hc------CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHH
Q 039940 305 TA------GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEI 378 (449)
Q Consensus 305 ~~------~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~ 378 (449)
.. ..++..+. ++..+++.+-.++.++-.++-++++..+.++... .++--..++. +++.+...+....-+-
T Consensus 623 ~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~-~~~Isp~mW~--ll~li~e~~~~~~~dy 698 (1010)
T KOG1991|consen 623 STILLSLENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL-SKEISPIMWG--LLELILEVFQDDGIDY 698 (1010)
T ss_pred HHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh-hcccCHHHHH--HHHHHHHHHhhhhHHH
Confidence 32 22222222 2334666666777777778888888777776654 2222222222 4555555555444444
Q ss_pred HHHHHHHHHHHHHhhhh
Q 039940 379 VTVCLKGLENILKVGEA 395 (449)
Q Consensus 379 ~~~~~~~l~~l~~~~~~ 395 (449)
-....-+|.|++..+..
T Consensus 699 f~d~~~~l~N~vt~g~~ 715 (1010)
T KOG1991|consen 699 FTDMMPALHNYVTYGTP 715 (1010)
T ss_pred HHHHHHHHhhheeeCch
Confidence 44555555555555443
No 133
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.00012 Score=65.95 Aligned_cols=308 Identities=16% Similarity=0.147 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCC-----ChhhhHHHHhCCCh
Q 039940 36 NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASG-----TSVNTKVLIDHGAV 110 (449)
Q Consensus 36 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i 110 (449)
..+++++...|..++..- ....+....+...+...+.... ++++..+..++..+... .|+..+.-...|.+
T Consensus 269 s~~rle~~qvl~~~a~~~---~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~f 344 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYF---SMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPF 344 (728)
T ss_pred chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccH
Confidence 457777777777776431 1222222223333444455666 89999999988877641 22222222222211
Q ss_pred HHHHH-------hhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC
Q 039940 111 PIFVK-------LLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP 183 (449)
Q Consensus 111 ~~L~~-------~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 183 (449)
-...- .-++.-+..+..++.++.++.......-+.- .....+.+..-..++.+.-++..|.+++.-+.-+..
T Consensus 345 w~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~-~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~ 423 (728)
T KOG4535|consen 345 WTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPND-RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPC 423 (728)
T ss_pred HHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCc-chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccc
Confidence 11111 1112334566667777777753221100000 001112222222233334455566666665555542
Q ss_pred -CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccC----Chh---HHHHHHHhCcHHHHHHhhC---CCCCcchh
Q 039940 184 -QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDG----TND---KIQAVIEAGVCGPLVELLG---HPSPSVLI 252 (449)
Q Consensus 184 -~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~----~~~---~~~~~~~~~~~~~L~~ll~---~~~~~v~~ 252 (449)
.........+...+...+.+..-..+..+.|+++|++.. .+. ....+ ..-.+..+...-. -.+..++.
T Consensus 424 lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~-sg~ll~~~~~~A~~~~Ad~dkV~~ 502 (728)
T KOG4535|consen 424 LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERF-SGLLLLKMLRSAIEASADKDKVKS 502 (728)
T ss_pred hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhh
Confidence 223344466677777777777788899999999998742 121 11111 1112233333222 24567999
Q ss_pred hHHHHHHHhhcCChhhHH---HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHh
Q 039940 253 PALRTVGNIVTGDDFQTQ---CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK-QIQAVIDAGLIVPLVNLL 328 (449)
Q Consensus 253 ~a~~~l~~l~~~~~~~~~---~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~l~~~~~~~~L~~ll 328 (449)
.+..+|+|+...-+...+ ..+..+.+..+....-.+....|+++||.+++|+..+..- ....=+-..+++.|..++
T Consensus 503 navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv 582 (728)
T KOG4535|consen 503 NAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV 582 (728)
T ss_pred HHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence 999999998754221111 0111122222322222233778999999999999764211 000011223577777777
Q ss_pred hcC-chhHHHHHHHHHHHhhcc
Q 039940 329 QDA-EFDIKKEAAWAISNATKA 349 (449)
Q Consensus 329 ~~~-~~~v~~~a~~aL~~l~~~ 349 (449)
.+. +.++|.+|+.+|..-...
T Consensus 583 ~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 583 TSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred HHhccceEeehhhhhhcCCCCc
Confidence 655 899999999998876554
No 134
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.81 E-value=2e-05 Score=50.25 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=46.1
Q ss_pred CcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHH
Q 039940 248 PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNI 304 (449)
Q Consensus 248 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl 304 (449)
|.+|..|+++|++++...+...+. ....+++.|..+|.++ ++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 357899999999988776666555 4456999999999988 889999999999975
No 135
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.78 E-value=0.025 Score=50.77 Aligned_cols=223 Identities=10% Similarity=0.120 Sum_probs=155.2
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH-----HHHHHHh--CcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 039940 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK-----IQAVIEA--GVCGPLVELLGHPSPSVLIPALRTVGNIVT 263 (449)
Q Consensus 191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~-----~~~~~~~--~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~ 263 (449)
.+.+..++..|..-+-+.+..+.....++.+...+. .+.+... .++..|+..- +++++...+-..|..++.
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 477888888888888999999999998887664322 2223221 2333333332 456666666666766666
Q ss_pred CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHC---CChHHHHHHhhcCchhHHHHHH
Q 039940 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDA---GLIVPLVNLLQDAEFDIKKEAA 340 (449)
Q Consensus 264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~---~~~~~L~~ll~~~~~~v~~~a~ 340 (449)
. +...+.++....+..+.+.+..+ +-++...|..++..+....+.....++.. .++...-.++.+++.-+|..++
T Consensus 153 ~-e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 H-ESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp S-HHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred h-HHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 5 66777888888999999999999 99999999999999877666666666643 3577888889999999999999
Q ss_pred HHHHHhhccCCHHHH----HHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhc
Q 039940 341 WAISNATKAGTQEQI----KYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA 416 (449)
Q Consensus 341 ~aL~~l~~~~~~~~~----~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (449)
..|+.+... +.+. +++-+..-+..++.+|+++...++..|..++.-++....+.. +....+...
T Consensus 231 kLL~ellld--r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~----------~I~~iL~~N 298 (335)
T PF08569_consen 231 KLLGELLLD--RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPP----------PIVDILIKN 298 (335)
T ss_dssp HHHHHHHHS--GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BH----------HHHHHHHHT
T ss_pred HHHHHHHHc--hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCCh----------HHHHHHHHH
Confidence 999999974 3332 344445678999999999999999999999998887765432 345555443
Q ss_pred --chHHHHHHHhcCC
Q 039940 417 --EGFKKIEDLKSHG 429 (449)
Q Consensus 417 --~~~~~l~~l~~~~ 429 (449)
..++-+..+..+.
T Consensus 299 r~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 299 REKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHHHHTTTTT-
T ss_pred HHHHHHHHHhCCCCC
Confidence 2456666665554
No 136
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.77 E-value=0.00014 Score=51.99 Aligned_cols=66 Identities=14% Similarity=0.317 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhC--CCChHHHHHHHHHHHHHhcCCCchhhhHhh
Q 039940 83 QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLA--SPSDDVREQAVWALGNIVAHSPGCRNLVLH 148 (449)
Q Consensus 83 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 148 (449)
+...+++|+|++..++...+.+.+.|++|.++.... ..+|-+++.|++++.|++.++++.+..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 566789999999999999999999999999999764 577999999999999999999988877754
No 137
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.014 Score=56.12 Aligned_cols=320 Identities=13% Similarity=0.139 Sum_probs=192.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCC
Q 039940 29 AGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHG 108 (449)
Q Consensus 29 ~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 108 (449)
+-|+.++.-+|-..++.|+++- . .+-. ...+|.+.+.|.+.. .-++.+|..++..+.... +.++ ..
T Consensus 106 kDLQHPNEyiRG~TLRFLckLk-E--~ELl-----epl~p~IracleHrh-sYVRrNAilaifsIyk~~----~~L~-pD 171 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLK-E--PELL-----EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNF----EHLI-PD 171 (948)
T ss_pred hhccCchHhhcchhhhhhhhcC-c--HHHh-----hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhh----hhhc-CC
Confidence 4445566677777777776662 1 1111 345788888899998 899999999998887631 1122 13
Q ss_pred ChHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc--ccccHHHHHHHHHHHHHhhcCCCCC
Q 039940 109 AVPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN--EHARLSMLRIGTWTLSNLCKGKPQP 185 (449)
Q Consensus 109 ~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~a~~~l~~l~~~~~~~ 185 (449)
+-..+-++|. ..++....+|...|... +++ .++..+..... .+.++..+...+..+...|...|..
T Consensus 172 apeLi~~fL~~e~DpsCkRNAFi~L~~~---D~E--------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~ 240 (948)
T KOG1058|consen 172 APELIESFLLTEQDPSCKRNAFLMLFTT---DPE--------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE 240 (948)
T ss_pred hHHHHHHHHHhccCchhHHHHHHHHHhc---CHH--------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH
Confidence 3344444443 46788888887766644 222 12333333332 2345666666677777776644322
Q ss_pred ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcC
Q 039940 186 PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPALRTVGNIVTG 264 (449)
Q Consensus 186 ~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~l~~l~~~ 264 (449)
. ...+..+..+|.+.++.++-.+..++.+++..+.. .+.. ...++.++.. ++..+..-.+--|..+...
T Consensus 241 ~----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~a-lk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~ 310 (948)
T KOG1058|consen 241 K----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTA-LKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKAL 310 (948)
T ss_pred h----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHH-HHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhh
Confidence 2 35677888899888999999999998888855432 2211 2334444332 3334444444444444432
Q ss_pred ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHH
Q 039940 265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAI 343 (449)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL 343 (449)
+.. ++ .|.+--++.+|+++ |-++|+.+......++. ++-+.+-.+++..+...--. =.+++...|.....++
T Consensus 311 ~~~----il-~~l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLikti 383 (948)
T KOG1058|consen 311 HEK----IL-QGLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTI 383 (948)
T ss_pred hHH----HH-HHHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHH
Confidence 222 11 24555677888888 99999999988888875 45443333332111111100 0112445677788888
Q ss_pred HHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940 344 SNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 344 ~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 396 (449)
..++.. -++... .+++.|++.+.+.++.--..++..+...++..++.
T Consensus 384 h~cav~-Fp~~aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L 430 (948)
T KOG1058|consen 384 HACAVK-FPEVAA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL 430 (948)
T ss_pred HHHhhc-ChHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH
Confidence 888775 344433 36888999999888887777777777777776654
No 138
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0021 Score=61.35 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=97.0
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChhhHH
Q 039940 192 PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQ 270 (449)
Q Consensus 192 ~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~ 270 (449)
++=+.+.+++.+.|+-+|...+.++.---.+... .+.+..|+.. +++.+.+||..|..+|+-++..+++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-- 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-- 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence 5556777888888888888877666532222211 1456666666 66788999999999999998876643
Q ss_pred HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940 271 CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 271 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 350 (449)
.+..+.+|..+.++.||..++.+|+-.|.+.-.. . .+..|-.+..+...-||+.|+.+++-+....
T Consensus 590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~--e-----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK--E-----AINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH--H-----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 4567778877769999999999999998753211 1 2334445556667789999999988877654
Q ss_pred C
Q 039940 351 T 351 (449)
Q Consensus 351 ~ 351 (449)
+
T Consensus 656 t 656 (929)
T KOG2062|consen 656 T 656 (929)
T ss_pred c
Confidence 3
No 139
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.76 E-value=0.0087 Score=56.51 Aligned_cols=239 Identities=16% Similarity=0.131 Sum_probs=149.8
Q ss_pred hhcHHHHHHHh----------cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-----CCHHHHHH
Q 039940 21 LEILPAMVAGV----------WSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE-----DYPRLQFE 85 (449)
Q Consensus 21 ~~~i~~l~~~l----------~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~~~~~~ 85 (449)
.+++..+.+.- .+.++.+..+|+++|+|..-.+ ...+..+.+.|..+.+++.|+.. + .++...
T Consensus 21 ~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl 98 (446)
T PF10165_consen 21 EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFL 98 (446)
T ss_pred HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHH
Confidence 34555555544 3567999999999999998765 56677788999999999999876 4 688999
Q ss_pred HHHHHHHhcCCChhhhHHHHhC-CChHHHHHhhCC-----------------CChHHHHHHHHHHHHHhcCCCchhhhHh
Q 039940 86 AAWVLTNIASGTSVNTKVLIDH-GAVPIFVKLLAS-----------------PSDDVREQAVWALGNIVAHSPGCRNLVL 147 (449)
Q Consensus 86 a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 147 (449)
..++|.-++...++.+..+++. +++..+...+.. .+......++.++.|+....+.... -.
T Consensus 99 ~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~ 177 (446)
T PF10165_consen 99 DSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EE 177 (446)
T ss_pred HHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hh
Confidence 9999999888778888777765 778877776621 1345566788889999766554332 11
Q ss_pred hcCCHHHHHHHHccc--------ccHHHHHHHHHHHHHhhcCC------------CCCChhhhhchHHHHHHhhc----C
Q 039940 148 HEEALIPLLAQLNEH--------ARLSMLRIGTWTLSNLCKGK------------PQPPFDQVRPVLPALAQLIH----L 203 (449)
Q Consensus 148 ~~~~i~~l~~~l~~~--------~~~~~~~~a~~~l~~l~~~~------------~~~~~~~~~~~l~~l~~ll~----~ 203 (449)
....++.++..+... +......+++.+|.|+-... ...........+..++.+|. .
T Consensus 178 ~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~ 257 (446)
T PF10165_consen 178 FSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDK 257 (446)
T ss_pred hhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHh
Confidence 233455555544322 23456667777777662110 00000111233444444443 2
Q ss_pred C----CHHHHHHHHHHHHHcccCChhHHHHHHHhC-----------------cHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 039940 204 D----DEEVLRNVCWTLSNLSDGTNDKIQAVIEAG-----------------VCGPLVELLGHPSPSVLIPALRTVGNIV 262 (449)
Q Consensus 204 ~----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-----------------~~~~L~~ll~~~~~~v~~~a~~~l~~l~ 262 (449)
. -.+.....+.+|.+++.......+ .+... +-..|++++.++.+.++..+...+..+|
T Consensus 258 ~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk-~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc 336 (446)
T PF10165_consen 258 YEALKLDELLTPLLTLLTRLARAAREVRK-YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLC 336 (446)
T ss_pred cCcccchhhHhhHHHHHHHHHHhcHHHHH-HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 2 235777888888888877654433 33333 3445555555555556666666665555
Q ss_pred c
Q 039940 263 T 263 (449)
Q Consensus 263 ~ 263 (449)
.
T Consensus 337 ~ 337 (446)
T PF10165_consen 337 K 337 (446)
T ss_pred h
Confidence 4
No 140
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.013 Score=56.78 Aligned_cols=248 Identities=16% Similarity=0.163 Sum_probs=128.7
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC---CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHH
Q 039940 164 RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD---DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240 (449)
Q Consensus 164 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~ 240 (449)
+..++.++++.+..+-..+ .-.+..++..+..+ ++-.+....+....+...+. ....-+.+.+-
T Consensus 185 ~~m~QyHalglLyqirk~d--------rla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~-----~~~s~~~~fl~ 251 (865)
T KOG1078|consen 185 NIMVQYHALGLLYQIRKND--------RLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQ-----QADSPLFPFLE 251 (865)
T ss_pred HHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcc-----cchhhHHHHHH
Confidence 4467788888888876654 22333333333321 22111111222222222221 11123566777
Q ss_pred HhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Q 039940 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320 (449)
Q Consensus 241 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 320 (449)
.++.+....+..+|..++.++...++.... ..+..|-.+++++ ...+|-.|.++|..++...|+... . .
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp-~~~lRfaAvRtLnkvAm~~P~~v~---~--c 320 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSP-KVALRFAAVRTLNKVAMKHPQAVT---V--C 320 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHhCCcccc---c--c
Confidence 778888888999999999888765543322 2667777788888 889999999999999864443221 0 1
Q ss_pred hHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccC
Q 039940 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRG 400 (449)
Q Consensus 321 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 400 (449)
=..|-.++.+.+ |..|..++..+...|......+|.. .+....++-+.+....+.+++..++...+..+.
T Consensus 321 N~elE~lItd~N---rsIat~AITtLLKTG~e~sv~rLm~-----qI~~fv~disDeFKivvvdai~sLc~~fp~k~~-- 390 (865)
T KOG1078|consen 321 NLDLESLITDSN---RSIATLAITTLLKTGTESSVDRLMK-----QISSFVSDISDEFKIVVVDAIRSLCLKFPRKHT-- 390 (865)
T ss_pred chhHHhhhcccc---cchhHHHHHHHHHhcchhHHHHHHH-----HHHHHHHhccccceEEeHHHHHHHHhhccHHHH--
Confidence 112333343333 3445556666666666566555443 222333322222223333333333333322221
Q ss_pred CCCCcccHHHHHHHhcchHHHHHHH------hcCCCHHHHHHHHHHHHHhcCCC
Q 039940 401 STIGDVNQYARLVEGAEGFKKIEDL------KSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
+-.+-....+++.||++--..+ +-..+++-++.+..-+..|++++
T Consensus 391 ---~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc 441 (865)
T KOG1078|consen 391 ---VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC 441 (865)
T ss_pred ---HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc
Confidence 1233345666666665432221 22345666666666666666543
No 141
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0044 Score=62.54 Aligned_cols=237 Identities=14% Similarity=0.133 Sum_probs=148.5
Q ss_pred CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc---ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 039940 119 SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN---EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLP 195 (449)
Q Consensus 119 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~ 195 (449)
+.+..+|..+..+|..++.. +...... ...+..+.+.+. ++.....+...+.++..+....+..........++
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~--~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLV--EQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHH--HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35788999999999999876 3332222 122333333332 44566778888888888888766444444555666
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHccc--CC----hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhH
Q 039940 196 ALAQLIHLDDEEVLRNVCWTLSNLSD--GT----NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQT 269 (449)
Q Consensus 196 ~l~~ll~~~~~~~~~~~~~~l~~l~~--~~----~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~ 269 (449)
-++-.++..|...+..+..+|..++. .. .+.....++ .++..+...+-.+...+....+.++..+........
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~ln-efl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l 820 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILN-EFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL 820 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHH-HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence 65555677788889999888888872 10 011111111 233333333333333333333445555544322222
Q ss_pred HHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 270 QCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 270 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
....-.++++.+..+|.+. .+++++.|...+..++...|+..-.-....+++.+..++++....++..+...|..|+..
T Consensus 821 d~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2222235666777778888 999999999999999986665433333345889999999888899999999999888887
Q ss_pred CCHHHHHHHHH
Q 039940 350 GTQEQIKYLVR 360 (449)
Q Consensus 350 ~~~~~~~~l~~ 360 (449)
...+..+.+.+
T Consensus 900 fg~~eLe~~~p 910 (1176)
T KOG1248|consen 900 FGAEELESFLP 910 (1176)
T ss_pred hCHHHHHhhCH
Confidence 66666665554
No 142
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.0014 Score=64.17 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=126.6
Q ss_pred cccHHHHHHHH-HHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHH
Q 039940 162 HARLSMLRIGT-WTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240 (449)
Q Consensus 162 ~~~~~~~~~a~-~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~ 240 (449)
+.+...+..|+ .+++.++.+.+ .....+-+++...+.|.++++-+-.-+.+.+...++..- -.+..+.
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l-----LavNti~ 98 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL-----LAVNTIQ 98 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHH
Confidence 33344444444 56667776653 346677777777788999999988888888888885433 2356677
Q ss_pred HhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Q 039940 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320 (449)
Q Consensus 241 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 320 (449)
+=++++++.+|..|+++++.+-. ++.. ..+++.+.+++.++ ++.||+.|+.++.++-.-+++ .+.+.|.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~--~el~-----~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~ 167 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRV--KELL-----GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGL 167 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcCh--HHHH-----HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccH
Confidence 77889999999999999976643 2222 24688899999999 999999999999999876665 3456688
Q ss_pred hHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 321 IVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 321 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
+..+..++.+.+|.+..+|..+|..+-..
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 99999999999999999999999988653
No 143
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.69 E-value=0.022 Score=56.11 Aligned_cols=242 Identities=14% Similarity=0.093 Sum_probs=155.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCC
Q 039940 73 FLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEA 151 (449)
Q Consensus 73 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 151 (449)
.+.....+.+...|.+++...+.....+...+- .++...+..+. +..+.++..|+++++..++..+ .. . ...++
T Consensus 457 ~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~-~-~~p~i 531 (1005)
T KOG2274|consen 457 GLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LL-S-LQPMI 531 (1005)
T ss_pred hcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-cc-c-cchHH
Confidence 344444467667888888877763322222111 12344444443 3556777888888888773221 11 1 12234
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--CCCHHHHHHHHHHHHHcccCChhHHHH
Q 039940 152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH--LDDEEVLRNVCWTLSNLSDGTNDKIQA 229 (449)
Q Consensus 152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~ 229 (449)
+..++.+. ...+.++....+.+|+..+..+|.........+.|....+.. ++||.+...+..++..++...... .
T Consensus 532 ld~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g- 608 (1005)
T KOG2274|consen 532 LDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-G- 608 (1005)
T ss_pred HHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-c-
Confidence 44555555 566788899999999999999887777777778887776654 567877777777777776532221 1
Q ss_pred HHHhCcHHHHHHhhCCCC----CcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 039940 230 VIEAGVCGPLVELLGHPS----PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT 305 (449)
Q Consensus 230 ~~~~~~~~~L~~ll~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 305 (449)
-+....+|.+++.|..+. .....-++-.|.-+.++.+.-....+-...+|.+.++.-+..|..+...+.-+|..+.
T Consensus 609 ~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 609 PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 223367899999998866 4556667777776766654433334444578888887655548889999999999999
Q ss_pred cCCHHHHHHHHHCCChH
Q 039940 306 AGNRKQIQAVIDAGLIV 322 (449)
Q Consensus 306 ~~~~~~~~~l~~~~~~~ 322 (449)
..+.++....-..++..
T Consensus 689 s~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 689 SVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred hcCHHHHHhhccCCCcc
Confidence 87777665554444333
No 144
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.65 E-value=0.0026 Score=49.48 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=103.6
Q ss_pred HHHHHhCcHHHHHHhhCCCCC------cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-chhHHHHHHHH
Q 039940 228 QAVIEAGVCGPLVELLGHPSP------SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWT 300 (449)
Q Consensus 228 ~~~~~~~~~~~L~~ll~~~~~------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~ 300 (449)
..+++.+++..|+.++.++.. ++...++.++..+..+. ......+...++.++......+. +..+...|...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 346777999999999988653 56677888888887763 33334556678888888887654 68899999999
Q ss_pred HHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHH
Q 039940 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLV 359 (449)
Q Consensus 301 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~ 359 (449)
|-+++..++.....+.+.=-++.|+..+...+++++.+|...+..+...++++.++.+.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 99999888776666666677999999999999999999999999998887776666544
No 145
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0051 Score=59.34 Aligned_cols=279 Identities=14% Similarity=0.107 Sum_probs=132.2
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCC
Q 039940 72 EFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEA 151 (449)
Q Consensus 72 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 151 (449)
..+.+.. +.+...|++++.++...++.... ..+..|--+++++...+|-.|.++|..++...|...... +
T Consensus 252 s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c---N- 321 (865)
T KOG1078|consen 252 SCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC---N- 321 (865)
T ss_pred HHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc---c-
Confidence 3444555 67778888888887764432221 257777778888888888888888888887666532111 1
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH
Q 039940 152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI 231 (449)
Q Consensus 152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 231 (449)
.-+-.++ .+.+..+ +..++..+......... ...+..+..++..=+.+.+.-+..++..+|..-+...
T Consensus 322 -~elE~lI-td~NrsI---at~AITtLLKTG~e~sv---~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~---- 389 (865)
T KOG1078|consen 322 -LDLESLI-TDSNRSI---ATLAITTLLKTGTESSV---DRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH---- 389 (865)
T ss_pred -hhHHhhh-cccccch---hHHHHHHHHHhcchhHH---HHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH----
Confidence 1122222 2222222 22223333222211111 1122222222222122222222333333332222111
Q ss_pred HhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940 232 EAGVCGPLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK 310 (449)
Q Consensus 232 ~~~~~~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 310 (449)
.+.+..|..+|.. +..+.+.....++..+...+++.+. .++..|...+.+. +...-+.+.|.-+....|.
T Consensus 390 -~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhlLG~EgP~ 460 (865)
T KOG1078|consen 390 -TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHLLGKEGPK 460 (865)
T ss_pred -HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHHHhccCCC
Confidence 1334555555544 3344556666666666554444332 2344455555433 2333444444444331111
Q ss_pred HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 039940 311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENIL 390 (449)
Q Consensus 311 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~ 390 (449)
. ......+..+.+...-++..+|..|..++.++... ++.. ...+.-.|.+++.+.|.+++..|-..+..+-
T Consensus 461 a---~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~-~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 461 A---PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQ-DVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred C---CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC-CCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 0 00112333344444445667777777777777632 2211 1224445566666777777777777766665
No 146
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.64 E-value=0.00017 Score=42.59 Aligned_cols=39 Identities=33% Similarity=0.690 Sum_probs=35.8
Q ss_pred hhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHh
Q 039940 98 SVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIV 136 (449)
Q Consensus 98 ~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 136 (449)
++.+..+.+.|+++.|++++.+++++++..++|+|+|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788899999999999999999999999999999986
No 147
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.11 Score=52.90 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=107.3
Q ss_pred cHHHHHHhhCC----CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940 235 VCGPLVELLGH----PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK 310 (449)
Q Consensus 235 ~~~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 310 (449)
+.|.++...+. ++|+++..|.-+|+.+..-+..... .-++.|+.+|...+++.+|.++.-+++.++..-|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 34445555532 4567888888888888766555443 35788999998554999999999999999876555
Q ss_pred HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 039940 311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENIL 390 (449)
Q Consensus 311 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~ 390 (449)
.++. .-+.|.+.+.+.++.||+.|..+++++... +.+ .-.|.+..+..++.+++++++..|-..+.-+.
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmi---KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILN---DMI---KVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhh---HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 4433 456899999999999999999999999885 222 24788999999999999999888876665555
Q ss_pred Hhh
Q 039940 391 KVG 393 (449)
Q Consensus 391 ~~~ 393 (449)
..+
T Consensus 1064 ~k~ 1066 (1251)
T KOG0414|consen 1064 SKG 1066 (1251)
T ss_pred hcc
Confidence 544
No 148
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.56 E-value=0.0053 Score=50.13 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH
Q 039940 205 DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL 284 (449)
Q Consensus 205 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 284 (449)
|+.++.+++.+++.++...+...+ ..++.+...|.++++.+|..|+.++..+...+--. .+..++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 578899999999999977665444 56889999999999999999999999998653211 123344778888
Q ss_pred hccCCchhHHHHHHHHHHHHhcC
Q 039940 285 LINNHKKSIKKESCWTVSNITAG 307 (449)
Q Consensus 285 l~~~~~~~v~~~a~~~l~nl~~~ 307 (449)
+.++ +++++..|..++..+...
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8888 999999999999999864
No 149
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.012 Score=49.42 Aligned_cols=256 Identities=18% Similarity=0.208 Sum_probs=148.6
Q ss_pred HHHHHhhcCCC-CHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940 68 PRFVEFLLRED-YPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146 (449)
Q Consensus 68 ~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 146 (449)
..+.+.|.+.+ ...-+..|+..|.++... +.+..+.+...+++.......+.+|+....
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~--------- 65 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQD--------- 65 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhcc---------
Confidence 34444444422 123344555555555542 225666666666556666666777776532
Q ss_pred hhcCCHHHHHHHHcc-cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChh
Q 039940 147 LHEEALIPLLAQLNE-HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND 225 (449)
Q Consensus 147 ~~~~~i~~l~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 225 (449)
...++.++..+.. +..+.++..|..+|..+... ..++.+.+..+.+-..++..+..++..+-..+.-
T Consensus 66 --~~Av~~l~~vl~desq~pmvRhEAaealga~~~~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 66 --EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred --chhhHHHHHHhcccccchHHHHHHHHHHHhhcch----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 2356677777743 34567778888888887732 5666777777556666777666666554322110
Q ss_pred HHH----HH--H------HhCcHHHHHH-hhCCCCCc-chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCch
Q 039940 226 KIQ----AV--I------EAGVCGPLVE-LLGHPSPS-VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKK 291 (449)
Q Consensus 226 ~~~----~~--~------~~~~~~~L~~-ll~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 291 (449)
... .. . ..+-+..+-. +++.+.+. -|..|++.|.|+-. + ..+..+.+-+..+ +.
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-Sa 201 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-SA 201 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-hH
Confidence 000 00 0 0001111111 22222222 23345555544422 1 1345566777777 88
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHh
Q 039940 292 SIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCD 369 (449)
Q Consensus 292 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ 369 (449)
-.|.+++++++.+-+ +. .++.|...|.+. ++-||..|+.||+.++. ++ .++.|..
T Consensus 202 lfrhEvAfVfGQl~s--~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~---------~~~vL~e 258 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQS--PA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---ED---------CVEVLKE 258 (289)
T ss_pred HHHHHHHHHHhhccc--hh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HH---------HHHHHHH
Confidence 899999999999843 22 456666666554 88999999999999975 33 4566677
Q ss_pred hccCCCHHHHHHHHHHHHHHH
Q 039940 370 LLLCADPEIVTVCLKGLENIL 390 (449)
Q Consensus 370 ll~~~~~~~~~~~~~~l~~l~ 390 (449)
.+.++++-+++.|.-+|..+-
T Consensus 259 ~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHHH
Confidence 788888888888888876443
No 150
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.027 Score=54.00 Aligned_cols=126 Identities=19% Similarity=0.158 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC
Q 039940 167 MLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP 246 (449)
Q Consensus 167 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~ 246 (449)
+.+.+...+..+-..++ ....+.+.+..+++...+++..+|..++..|..+.....+.-+.+++ ++...+..-+.+.
T Consensus 62 Il~fla~fv~sl~q~d~--e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDK--EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHhhhccCc--hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhcc
Confidence 44444444444443332 22255778888888888899999999999999988754443333444 6778888888899
Q ss_pred CCcchhhHHHHHHHhhcC-ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHH
Q 039940 247 SPSVLIPALRTVGNIVTG-DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTV 301 (449)
Q Consensus 247 ~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l 301 (449)
.+.||..|+.+|+.+=.. .++. ..+...+..+++..++++||+.|...+
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~dee------~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDEE------CPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCCc------ccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 999999999999998632 1221 245667888888776899999875433
No 151
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.51 E-value=0.0086 Score=58.07 Aligned_cols=240 Identities=15% Similarity=0.086 Sum_probs=155.6
Q ss_pred hhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHccc
Q 039940 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSD 221 (449)
Q Consensus 143 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~ 221 (449)
+......|+...++.+. ....++.+..+..+|.. .. .-........++.+...+++.. ..-.-..+.++.|++.
T Consensus 497 ~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~---~i-~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas 571 (748)
T KOG4151|consen 497 RAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG---KI-DFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLAS 571 (748)
T ss_pred cCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh---hc-CCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcccC
Confidence 33445678888888887 44455666666666661 11 1111112344555555554332 2223468889999998
Q ss_pred CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHHhccCCchhHHHHHHHH
Q 039940 222 GTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN-HGAVPYLLALLINNHKKSIKKESCWT 300 (449)
Q Consensus 222 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~ 300 (449)
.+....+.+.+...++.+-.++..+++..+..++..+.||..+..-....+.+ ...++.....+... +......++.+
T Consensus 572 ~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~a 650 (748)
T KOG4151|consen 572 ISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAGA 650 (748)
T ss_pred cchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcccc
Confidence 77766666888777777777888899999999999999999886666666666 45566666666665 77788888888
Q ss_pred HHHHhcCCHHHHH-HHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHH
Q 039940 301 VSNITAGNRKQIQ-AVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIV 379 (449)
Q Consensus 301 l~nl~~~~~~~~~-~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~ 379 (449)
+..++......+. ..--......+..++.++++.++........|+... ..+....+.....+..+...-.-.....+
T Consensus 651 ~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~-~~ei~~~~~~~~~~~~l~~~~~~~~a~~~ 729 (748)
T KOG4151|consen 651 LAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA-LFEIAEKIFETEVMELLSGLQKLNRAPKR 729 (748)
T ss_pred ccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH-HHHHHHHhccchHHHHHHHHHHhhhhhhh
Confidence 8866653333333 222245788899999999999999999999995554 55666666665566655555443333344
Q ss_pred HHHHHHHHHH
Q 039940 380 TVCLKGLENI 389 (449)
Q Consensus 380 ~~~~~~l~~l 389 (449)
..+..+|...
T Consensus 730 ~~~~~~l~~a 739 (748)
T KOG4151|consen 730 EDAAPCLSAA 739 (748)
T ss_pred hhhhhHHHHH
Confidence 4444444433
No 152
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.48 E-value=0.00038 Score=41.04 Aligned_cols=38 Identities=34% Similarity=0.670 Sum_probs=34.3
Q ss_pred hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 039940 267 FQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT 305 (449)
Q Consensus 267 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 305 (449)
+....+.+.|+++.|++++.++ +++++..++|+|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence 3566788999999999999988 9999999999999986
No 153
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.48 E-value=0.0071 Score=49.41 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCC-HHHHHHH
Q 039940 80 PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEA-LIPLLAQ 158 (449)
Q Consensus 80 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-i~~l~~~ 158 (449)
+.++..++.+++.++...+...+ ..++.+...|.++++.+|..|+.+|.+|...+.. .-.|. +..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHHH
Confidence 68899999999999985554433 3479999999999999999999999999765422 12233 3677777
Q ss_pred HcccccHHHHHHHHHHHHHhhcCC
Q 039940 159 LNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 159 l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
+ .+++++++..|..++..+....
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHhc
Confidence 7 8899999999999999998873
No 154
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.46 E-value=0.026 Score=53.78 Aligned_cols=295 Identities=13% Similarity=0.091 Sum_probs=151.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhh
Q 039940 69 RFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLH 148 (449)
Q Consensus 69 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 148 (449)
.++...+ ++ ...+..|+..+.......|+..+. ++..++.+..+++..+|.+|+..|..+|.++++....+.
T Consensus 27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva- 98 (556)
T PF05918_consen 27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA- 98 (556)
T ss_dssp HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-
T ss_pred HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-
Confidence 3444445 34 689999999999999988887664 478999999999999999999999999999877655543
Q ss_pred cCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---CCCHHHHHHHHHHHHHccc-CCh
Q 039940 149 EEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH---LDDEEVLRNVCWTLSNLSD-GTN 224 (449)
Q Consensus 149 ~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~~~~~~~~~l~~l~~-~~~ 224 (449)
..|..+| ...++.-...+-.+|..+...++ .+.+..+...+. +.+..+++.++..|..-.. -..
T Consensus 99 ----DvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 99 ----DVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp ----HHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred ----HHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 3677777 66666666666667766666543 345555555554 5678889998877743221 111
Q ss_pred hHHH--HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc----CChhhHHHHHhcCCHHHHHHHh------ccCCchh
Q 039940 225 DKIQ--AVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT----GDDFQTQCVINHGAVPYLLALL------INNHKKS 292 (449)
Q Consensus 225 ~~~~--~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~l~~L~~ll------~~~~~~~ 292 (449)
+... .=.+.-++..+...|.+-..+--...+.+|..+-. ......+.+ ++.+.+.. ... |++
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~e 240 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DPE 240 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SHH
T ss_pred HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CHH
Confidence 1111 11222344555566655332223334444544433 122222222 23333222 112 444
Q ss_pred HHHHHHHHHHH----Hhc--CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHH
Q 039940 293 IKKESCWTVSN----ITA--GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP 366 (449)
Q Consensus 293 v~~~a~~~l~n----l~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~ 366 (449)
.......++.. +.. ++.....++.+ .++|.+-.+ ..+.+...+.++..++..+.......+++ -+...
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~~ 314 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQL 314 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHH
Confidence 44333333332 222 34445544444 577766555 45777788888888888754333333221 12333
Q ss_pred HHhhccC--CCH----HHHHHHHHHHHHHHHhhhh
Q 039940 367 LCDLLLC--ADP----EIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 367 L~~ll~~--~~~----~~~~~~~~~l~~l~~~~~~ 395 (449)
|...+-. ..+ ..++..+.++..|.+..++
T Consensus 315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 3333322 222 3466777777777766554
No 155
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.45 E-value=0.048 Score=49.03 Aligned_cols=201 Identities=12% Similarity=0.080 Sum_probs=145.6
Q ss_pred HHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhh-----HHHHHh--cCCHHHHHHHhccCCchhHHHHHHHH
Q 039940 228 QAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQ-----TQCVIN--HGAVPYLLALLINNHKKSIKKESCWT 300 (449)
Q Consensus 228 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~-----~~~~~~--~~~l~~L~~ll~~~~~~~v~~~a~~~ 300 (449)
..+...+++..|+..|..-+-+.+..+..+++++.+..... .+.+.. ..++..|+..-+ ++++-..+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence 44667799999999999999999999999999998764322 223322 234444444444 45666677777
Q ss_pred HHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHc---CChHHHHhhccCCCHH
Q 039940 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVRE---GCIKPLCDLLLCADPE 377 (449)
Q Consensus 301 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~~~~L~~ll~~~~~~ 377 (449)
|..++.+ +.....++....+..+.+....++.++...|..++..+... .+.....++.. ..+.....++.+++.-
T Consensus 147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 7777664 56677888888999999999999999999999999998886 45555555543 3577888899999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039940 378 IVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILET 443 (449)
Q Consensus 378 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~ 443 (449)
++..++..|..++....+.. .....+.+..-++.+..|..+++..|+-.|-.+..-
T Consensus 225 tkrqslkLL~ellldr~n~~----------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKv 280 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFN----------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKV 280 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHH----------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHchhHHH----------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 99999999999998776543 224455555678888999999999999888777653
No 156
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.42 E-value=0.0034 Score=44.98 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHh
Q 039940 336 KKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEG 415 (449)
Q Consensus 336 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (449)
|..++.+|..++..-.....+++- ..+++++.++.++|+.+|..|+++|+++.+.....- ...|
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~------------l~~f-- 66 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI------------LPYF-- 66 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH------------HHHH--
Confidence 566778888877764444333333 389999999999999999999999999998875421 2222
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHH
Q 039940 416 AEGFKKIEDLKSHGNNGIREKAVTI 440 (449)
Q Consensus 416 ~~~~~~l~~l~~~~~~~i~~~a~~~ 440 (449)
...++.|-.+..+++++|+..|..+
T Consensus 67 ~~IF~~L~kl~~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 67 NEIFDALCKLSADPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHH
Confidence 2346889999999999999887443
No 157
>PRK14707 hypothetical protein; Provisional
Probab=97.41 E-value=0.29 Score=53.24 Aligned_cols=394 Identities=14% Similarity=0.078 Sum_probs=216.3
Q ss_pred cHHHHHHHhc--CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 23 ILPAMVAGVW--SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 23 ~i~~l~~~l~--s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
.+.-+++.++ .++...+..+...-..+++. ......+-..|+-..|-.+-+=+++++.+..+...-..++. .+..
T Consensus 164 ~~~lllNafSKw~~~~~c~~aa~~la~~~~~~--d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l 240 (2710)
T PRK14707 164 NISLALNAFSKWSDNPDCQAVAPRFAALVASD--DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL 240 (2710)
T ss_pred cHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC--hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence 3556666665 36677777666555555443 33344444445444444444545545666555554455555 4444
Q ss_pred hHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940 101 TKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~ 179 (449)
+..+-..| +-..+..|.. ++.....++...+..=....+..++.+ ....+...++-|.+-++..+-..+...+..=.
T Consensus 241 ~~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl 318 (2710)
T PRK14707 241 RNELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAERL 318 (2710)
T ss_pred HHhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence 44444344 5555555554 555455555555443333444544443 33345556666767777777776666555433
Q ss_pred cCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHH-HcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHH
Q 039940 180 KGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLS-NLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPALR 256 (449)
Q Consensus 180 ~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~ 256 (449)
.+++..........+...++.|. =+|..+...+..+|. .++ .+++..+.+- ..++...+.-+.. ++..+...+..
T Consensus 319 ~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~-~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~ 396 (2710)
T PRK14707 319 ADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLV-ADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAAS 396 (2710)
T ss_pred hccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-cCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHH
Confidence 33333222222333333344443 345555555554444 444 3443333333 3334444454444 77777777777
Q ss_pred HHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHH
Q 039940 257 TVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIK 336 (449)
Q Consensus 257 ~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~ 336 (449)
.|..-..++.+..+ -++...+...+.-|+.-++..+...++..|..-..++.+..+.+--.++...|-.+-+-++..+.
T Consensus 397 ~LA~~l~~d~~l~~-~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c 475 (2710)
T PRK14707 397 ALAEHVVDDLELRK-GLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPIC 475 (2710)
T ss_pred HHHHHhccChhhhh-hcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhH
Confidence 77665555455444 44555666666666655488888888888887777777766555444444444444455677888
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHH-HHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHh
Q 039940 337 KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE-IVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEG 415 (449)
Q Consensus 337 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (449)
..++..|..=..+ +++.++.|--.++...|-.+-+.+|.. ....+.++-..+.... .....|..
T Consensus 476 ~~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~--------------~l~~~~~~ 540 (2710)
T PRK14707 476 GQTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL--------------QLRKAFDA 540 (2710)
T ss_pred HHHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch--------------hhhhhhhh
Confidence 7888777766555 566777776666777777777777754 3344444444444211 12344444
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHH
Q 039940 416 AEGFKKIEDLKSHGNNGIREKAVT 439 (449)
Q Consensus 416 ~~~~~~l~~l~~~~~~~i~~~a~~ 439 (449)
.+....+..+-.+++....+.+..
T Consensus 541 ~~~~~~lnalSKwp~s~~C~~A~~ 564 (2710)
T PRK14707 541 HQVVNTLKALSKWPDKQLCAVAAS 564 (2710)
T ss_pred HHHHHHHHhhhcCCchhHHHHHHH
Confidence 455555666655555554444443
No 158
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.37 E-value=0.0075 Score=46.98 Aligned_cols=127 Identities=10% Similarity=0.145 Sum_probs=97.4
Q ss_pred HHHHHhcCCHHHHHHHhccCCc-----hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHH
Q 039940 269 TQCVINHGAVPYLLALLINNHK-----KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAW 341 (449)
Q Consensus 269 ~~~~~~~~~l~~L~~ll~~~~~-----~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~ 341 (449)
..+++..+++..|+++++++.. ..+...+..++..+..+.--.. ..++..++..+....+.. +..+.+.|+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4568889999999999988732 3556667777777766542222 333445677777777654 6899999999
Q ss_pred HHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 039940 342 AISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKK 397 (449)
Q Consensus 342 aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 397 (449)
.|-+++.+ ++.....+.++=-++.|+..++..+++++..++..+..++...+..+
T Consensus 83 ILEs~Vl~-S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 83 ILESIVLN-SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred HHHHHHhC-CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 99999996 56666776666679999999999999999999999999998876643
No 159
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.37 E-value=0.0021 Score=45.97 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc--CchhHHHHHHHHHHHhhccCCHHHHHHHH
Q 039940 293 IKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD--AEFDIKKEAAWAISNATKAGTQEQIKYLV 359 (449)
Q Consensus 293 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~ 359 (449)
.|......++|++..++.....+.+.|+++.+++...- .+|-+++.|.+|+.|++.. +++..+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~-n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG-NPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC-CHHHHHHHH
Confidence 46778899999999999999999999999999998644 4899999999999999997 566555443
No 160
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.07 Score=45.00 Aligned_cols=254 Identities=16% Similarity=0.204 Sum_probs=155.3
Q ss_pred hHHHHHhhCCCC--hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh
Q 039940 110 VPIFVKLLASPS--DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF 187 (449)
Q Consensus 110 i~~L~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 187 (449)
+..+.+.|.+.+ ..-+-.++..|.++.... .+..+.+.. .+.+......+++++......
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~-----------~i~~i~ka~-~d~s~llkhe~ay~LgQ~~~~------ 66 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGPA-----------AIKAITKAF-IDDSALLKHELAYVLGQMQDE------ 66 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCChH-----------HHHHHHHhc-ccchhhhccchhhhhhhhccc------
Confidence 455666665533 233445555555553221 244555555 333445556677777766554
Q ss_pred hhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC
Q 039940 188 DQVRPVLPALAQLIHLD--DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGD 265 (449)
Q Consensus 188 ~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 265 (449)
..+|.++..+... .+-+|..+..+++.+.. + +..+.+-+..+++...+++.+..++..+-..+
T Consensus 67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred ----hhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence 6788888888754 57788899999988762 1 34566666777788888888777776664321
Q ss_pred hhhH----HHH--------HhcCCHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCc
Q 039940 266 DFQT----QCV--------INHGAVPYLLALLINNH-KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAE 332 (449)
Q Consensus 266 ~~~~----~~~--------~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 332 (449)
.-.. ... ...+-+..+-..+.+.. ..--|..|.+.|.|+ +.++. +..+.+-+..++
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~--g~Eea---------I~al~~~l~~~S 200 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI--GTEEA---------INALIDGLADDS 200 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc--CcHHH---------HHHHHHhcccch
Confidence 1100 000 01122444444443331 223456778888887 33443 335555677778
Q ss_pred hhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc--CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHH
Q 039940 333 FDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL--CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYA 410 (449)
Q Consensus 333 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 410 (449)
.-.|..++++++.+-+.. .++.|...|. .+++-+|..|.++|..+..-
T Consensus 201 alfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------------------ 250 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE------------------ 250 (289)
T ss_pred HHHHHHHHHHHhhccchh------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------------------
Confidence 899999999999997632 3555555554 35778999999999866532
Q ss_pred HHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039940 411 RLVEGAEGFKKIEDLKSHGNNGIREKAVTILET 443 (449)
Q Consensus 411 ~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~ 443 (449)
..++.|+.+..++.+-|++.+...++-
T Consensus 251 ------~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 251 ------DCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred ------HHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 124567777777888888887777663
No 161
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.33 E-value=0.022 Score=47.25 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----CCCHHHHHHHHHHHHHhcC-CChhhhHHHHhCCChHHH
Q 039940 39 QLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR----EDYPRLQFEAAWVLTNIAS-GTSVNTKVLIDHGAVPIF 113 (449)
Q Consensus 39 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L 113 (449)
..+|+..|.-++++ .+.+..+.+..+--.+-.+|.. ...+.++..++.+++.+.. ++.+....+...+++|..
T Consensus 96 VcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 96 VCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred HHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 34566666666665 5777777777765555555543 2346789999999999997 556667778888999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH-------hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940 114 VKLLASPSDDVREQAVWALGNIVAHSPGCRNLV-------LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 114 ~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-------~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
++.+..+++.-+.-|..++..+..++....-.. .-...+..++..+.+.++..+..+++++..+|+.+.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999987664321111 111234444555556778888999999999998875
No 162
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.30 E-value=0.12 Score=46.28 Aligned_cols=195 Identities=10% Similarity=0.090 Sum_probs=122.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH--HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC--ChhhHHH
Q 039940 196 ALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI--EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG--DDFQTQC 271 (449)
Q Consensus 196 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~~ 271 (449)
-.+..+.......|..++..+.++...... .+.+. ...+++.+...++.+..+-+..|+.+++-++-. .......
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 344444556688899999888887754431 12121 124677888888887766666677777666533 2233344
Q ss_pred HHhcCCHHHHHHHhccCC-chhHHHHHHHHHHHHhc---CCHHHHHHHHHCCChHHHHH--Hhhc----------CchhH
Q 039940 272 VINHGAVPYLLALLINNH-KKSIKKESCWTVSNITA---GNRKQIQAVIDAGLIVPLVN--LLQD----------AEFDI 335 (449)
Q Consensus 272 ~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~--ll~~----------~~~~v 335 (449)
+++ .+.+.|...+.++. ...+|..++.+|+-++. ..++......+ .+..+.. ..+. +++.+
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 443 47788888887662 34566666667766653 33333332222 2231111 1111 13568
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 336 KKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 336 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
...|+.+.+-++...+........+ ..++.|..+|++.|.++|..|-++|.-+++....
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888877655544444333 3689999999999999999999999989887764
No 163
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.30 E-value=0.0042 Score=60.93 Aligned_cols=155 Identities=18% Similarity=0.208 Sum_probs=114.5
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHH--hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh
Q 039940 190 VRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIE--AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF 267 (449)
Q Consensus 190 ~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 267 (449)
...++|.++....+.+...+..-+.+|.++..+-|.. .+.. ..++|.|++.|.-++..++..++.++.-+....+.
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 3678899999988777778888888888888766642 2222 26788999999999999999999999888766544
Q ss_pred hHHHHHhcCCHHHHHHHhccCCc---hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHH
Q 039940 268 QTQCVINHGAVPYLLALLINNHK---KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAIS 344 (449)
Q Consensus 268 ~~~~~~~~~~l~~L~~ll~~~~~---~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~ 344 (449)
....-. ..++|.+..+=++. + ..||..|..++..+.+.-|...-...+..++..|...|.++..-+|++|..+=.
T Consensus 943 L~t~~~-~Tlvp~lLsls~~~-~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 943 LQTEHL-STLVPYLLSLSSDN-DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred cchHHH-hHHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 333222 34677777776665 4 579999999999999844443333344568888999999998999999987755
Q ss_pred Hhhc
Q 039940 345 NATK 348 (449)
Q Consensus 345 ~l~~ 348 (449)
+...
T Consensus 1021 ~W~~ 1024 (1030)
T KOG1967|consen 1021 NWYM 1024 (1030)
T ss_pred hhhh
Confidence 5443
No 164
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.27 E-value=0.0026 Score=62.36 Aligned_cols=191 Identities=17% Similarity=0.122 Sum_probs=130.2
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc-------------hhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHH
Q 039940 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPG-------------CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTL 175 (449)
Q Consensus 109 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~-------------~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l 175 (449)
+...++.+|+. +++-..+..++.-+..+++. +++.+. ...+|.++... ...+...+.....+|
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEAL 891 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHH
Confidence 34556666664 33444455555555544432 222221 34677777777 355666777888888
Q ss_pred HHhhcCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC---Ccch
Q 039940 176 SNLCKGKPQPP-FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS---PSVL 251 (449)
Q Consensus 176 ~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~v~ 251 (449)
+++..+-|... .......+|.|++.|.-+|..++..++.++.-+....+.....-++ .++|.++.+-.+++ ..+|
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence 88888655432 2234788899999999999999999999998877555433332222 46777777766655 4589
Q ss_pred hhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 039940 252 IPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT 305 (449)
Q Consensus 252 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 305 (449)
..|+.++..+.+.-+...-......++..|.+.|.++ ...+|++|..+=.+..
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhhh
Confidence 9999999999985555444445667899999999998 8889999987765543
No 165
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=97.25 E-value=0.088 Score=48.46 Aligned_cols=192 Identities=13% Similarity=0.107 Sum_probs=118.2
Q ss_pred HHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhh-cCCHHHHHHHHccc
Q 039940 85 EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLH-EEALIPLLAQLNEH 162 (449)
Q Consensus 85 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~-~~~i~~l~~~l~~~ 162 (449)
.|+++|-.+....+.....+.+.+++..++..+..+-....+. .-...-.... ++.+..... ..+ ..
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i---------~~ 71 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSI---------SY 71 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccccccc---------CH
Confidence 4777788888777778888899999999999886322221111 0000000111 111111100 000 00
Q ss_pred ccHHHHHHHHHHHHHhhc-CC-CCCC--hhhh-hchHHHHHHhhcCC---CHHHHHHHHHHHHHcccCChhHHHHHHHhC
Q 039940 163 ARLSMLRIGTWTLSNLCK-GK-PQPP--FDQV-RPVLPALAQLIHLD---DEEVLRNVCWTLSNLSDGTNDKIQAVIEAG 234 (449)
Q Consensus 163 ~~~~~~~~a~~~l~~l~~-~~-~~~~--~~~~-~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 234 (449)
......+..+.++..+.. .. .... -... ..++..|...+.+. .+.+...++..+..+..+.|.....+.+.|
T Consensus 72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~G 151 (379)
T PF06025_consen 72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAG 151 (379)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcC
Confidence 112233444444555555 22 1111 1112 35556666777654 488899999999999999998888899999
Q ss_pred cHHHHHHhhC-C---CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC
Q 039940 235 VCGPLVELLG-H---PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN 288 (449)
Q Consensus 235 ~~~~L~~ll~-~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 288 (449)
+.+.++..+. . ++.++....-.+++.+|-+ ....+.+.+.+.++.+++++.++
T Consensus 152 l~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 152 LIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred ChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCH
Confidence 9999999888 4 3445555566677777775 56667788899999999999876
No 166
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.24 E-value=0.0052 Score=59.53 Aligned_cols=233 Identities=15% Similarity=0.059 Sum_probs=150.5
Q ss_pred hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
+.|++..++++..-..+...+.+..+|..-...++... ..+++.+...+.......-...++.+++|+++.+..
T Consensus 502 k~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s 575 (748)
T KOG4151|consen 502 KPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISES 575 (748)
T ss_pred cccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchh
Confidence 45777777777777777777777777762223321211 233555555555443233346789999999998888
Q ss_pred hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940 100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~ 179 (449)
.+..+.+.-.++.+-.++..+++..+..++..+.||.....-+...+.+...=.++........++.....++.++..++
T Consensus 576 ~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~ 655 (748)
T KOG4151|consen 576 DRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAIT 655 (748)
T ss_pred hHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchh
Confidence 88888888788888888888999999999999999987665555555553332334443334566666666666666555
Q ss_pred cCCCCCC--hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940 180 KGKPQPP--FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257 (449)
Q Consensus 180 ~~~~~~~--~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 257 (449)
....+.. ..........+..++.+.+++++...+.++.|+.....+....+++...++.+...-.......+..+..+
T Consensus 656 sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~ 735 (748)
T KOG4151|consen 656 SVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAPC 735 (748)
T ss_pred hcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhhH
Confidence 4442222 33445667788888999999999999998888665555555556555555555444333333334444433
Q ss_pred H
Q 039940 258 V 258 (449)
Q Consensus 258 l 258 (449)
|
T Consensus 736 l 736 (748)
T KOG4151|consen 736 L 736 (748)
T ss_pred H
Confidence 3
No 167
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.22 E-value=0.017 Score=48.82 Aligned_cols=141 Identities=14% Similarity=0.164 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHhcC-CChhhhHHHHhCCChHHHH
Q 039940 40 LEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED----YPRLQFEAAWVLTNIAS-GTSVNTKVLIDHGAVPIFV 114 (449)
Q Consensus 40 ~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~ 114 (449)
..|+..|..++++ .+.+..++++.+.-.|..+|+..+ .+.++..++.+++.+.. ++++....+.+.+++|..+
T Consensus 68 cnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 68 CNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 3556666667764 688888999988777777776543 25788899999999997 5678888899999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHHhcCCCch-------hhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940 115 KLLASPSDDVREQAVWALGNIVAHSPGC-------RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 115 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
..|+.+++-.+.-|..++.++..++... ..+..-..++..++..+.+.+++.+.++..+|...|+.+.
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 9999999999999999998886554221 1122223345566666667788999999999999999985
No 168
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.21 E-value=0.22 Score=47.65 Aligned_cols=266 Identities=11% Similarity=0.061 Sum_probs=149.4
Q ss_pred hcHHHHHHHhc----C-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 039940 22 EILPAMVAGVW----S-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASG 96 (449)
Q Consensus 22 ~~i~~l~~~l~----s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 96 (449)
..++.++..-+ . ...+.|..+...|..++.+.. .... ... ..+.+.+..+..++.-..-+.+|..++.+
T Consensus 24 ~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~-~~~~-~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~ 97 (464)
T PF11864_consen 24 SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQD-SSSG-LMR----AEFFRDISDPSNDDDFDLRLEALIALTDN 97 (464)
T ss_pred hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccc-cccH-HHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcC
Confidence 34444544443 2 345677788888887776542 1111 111 12333334332233333444555555553
Q ss_pred ChhhhHHHHhCCChHHHHHhhCC---------------------------CChHHHHHHHHHHHHHhcCCCchhhhHhhc
Q 039940 97 TSVNTKVLIDHGAVPIFVKLLAS---------------------------PSDDVREQAVWALGNIVAHSPGCRNLVLHE 149 (449)
Q Consensus 97 ~~~~~~~~~~~~~i~~L~~~l~~---------------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 149 (449)
..+. ...+.++.+.|...+.. .+.......+..+.|+...+...-+.-.-.
T Consensus 98 Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~ 175 (464)
T PF11864_consen 98 GRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEIS 175 (464)
T ss_pred CcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 2222 22455677777766631 123334455666677765543322222224
Q ss_pred CCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHH
Q 039940 150 EALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQA 229 (449)
Q Consensus 150 ~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 229 (449)
+.+..++....+..++...+.++.++..+..+. ..+......++..|....... +....+-.++.||+......
T Consensus 176 ~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~--- 249 (464)
T PF11864_consen 176 SLVDQICTICKSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH--- 249 (464)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH---
Confidence 556666767656666666788888888877765 233444456666666664333 66667777888888654322
Q ss_pred HHHhCcHHHHHHhhCCC------CCcchhhHHHHHHHhhcCChhhHH-HHHhc--CCHHHHHHHhccCCchhHHHHHHHH
Q 039940 230 VIEAGVCGPLVELLGHP------SPSVLIPALRTVGNIVTGDDFQTQ-CVINH--GAVPYLLALLINNHKKSIKKESCWT 300 (449)
Q Consensus 230 ~~~~~~~~~L~~ll~~~------~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~--~~l~~L~~ll~~~~~~~v~~~a~~~ 300 (449)
..+..|..+|..+ +..+..-|+..+..+..+..+... .+--. -+++.+...++.+ ++.+-.+....
T Consensus 250 ----~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~ 324 (464)
T PF11864_consen 250 ----SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLL 324 (464)
T ss_pred ----HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHH
Confidence 2356677777332 334556788888888766522211 11112 2788888888888 77777788888
Q ss_pred HHHHhc
Q 039940 301 VSNITA 306 (449)
Q Consensus 301 l~nl~~ 306 (449)
+.++..
T Consensus 325 i~~ll~ 330 (464)
T PF11864_consen 325 INRLLD 330 (464)
T ss_pred HHHHHh
Confidence 888763
No 169
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.031 Score=54.76 Aligned_cols=222 Identities=11% Similarity=0.047 Sum_probs=142.7
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHH
Q 039940 161 EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240 (449)
Q Consensus 161 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~ 240 (449)
.++.+.++.+++..+..+.............+++......+.+.|+-+--+++..+..+|.-.+ ..+++.+.
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~dL~ 808 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPDLS 808 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHHHH
Confidence 4555678999999999999976555666668999999999999999999999998888875433 35566666
Q ss_pred Hh-hCC---CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 039940 241 EL-LGH---PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVI 316 (449)
Q Consensus 241 ~l-l~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~ 316 (449)
.. ... ..++.+..+-.++.+++..-.+....... .++...+....++ +...|..++..+++++....-......
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 63 222 22355555567777776543333332222 4666777777877 888999999999999863221111111
Q ss_pred HCCChHHHHHHhhc-CchhHHHHHHHHHHHhhccCCHHHHHHH--HHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHh
Q 039940 317 DAGLIVPLVNLLQD-AEFDIKKEAAWAISNATKAGTQEQIKYL--VREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKV 392 (449)
Q Consensus 317 ~~~~~~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l--~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~ 392 (449)
..++..++.+... +++.+|+.|...+..+..+.+.+....+ ...+..+.+..+.... ++.++..+..++..+-..
T Consensus 887 -~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 887 -HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred -HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 1245556665544 4789999999999999887543333221 1233455555555544 444555555555544443
Q ss_pred h
Q 039940 393 G 393 (449)
Q Consensus 393 ~ 393 (449)
-
T Consensus 966 l 966 (982)
T KOG4653|consen 966 L 966 (982)
T ss_pred H
Confidence 3
No 170
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.018 Score=56.33 Aligned_cols=231 Identities=14% Similarity=0.130 Sum_probs=149.4
Q ss_pred hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940 18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT 97 (449)
Q Consensus 18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 97 (449)
..+.+.+...+..+.++...++-.|+..|+.++.. ......+...+++...++.+++.+ +-+-..|+..+..+|...
T Consensus 723 s~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~--r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcevy 799 (982)
T KOG4653|consen 723 SVDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEK--RKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEVY 799 (982)
T ss_pred cccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHhc
Confidence 34455567777777888899999999999999864 355666677899999999999999 788888999888888743
Q ss_pred hhhhHHHHhCCChHHHHHh-hCCCC---hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHH
Q 039940 98 SVNTKVLIDHGAVPIFVKL-LASPS---DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTW 173 (449)
Q Consensus 98 ~~~~~~~~~~~~i~~L~~~-l~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 173 (449)
+ ..++|.+.+. .+..+ .+.+-..-.++.++.....+....- ..-.+..++... .+++...+..++.
T Consensus 800 ~--------e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y-~~~Li~tfl~gv-repd~~~RaSS~a 869 (982)
T KOG4653|consen 800 P--------EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY-KAVLINTFLSGV-REPDHEFRASSLA 869 (982)
T ss_pred c--------hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH-HHHHHHHHHHhc-CCchHHHHHhHHH
Confidence 3 3567888873 43211 2333334467777664332221111 112344555555 4677888999999
Q ss_pred HHHHhhcCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChhHHHHHHH---hCcHHHHHHhhCCC-CC
Q 039940 174 TLSNLCKGKPQPPFDQVRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTNDKIQAVIE---AGVCGPLVELLGHP-SP 248 (449)
Q Consensus 174 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~L~~ll~~~-~~ 248 (449)
.++++|.--...-......++..++.+...+ ..-+|++|+..+..+..+.....-.+.. .+....+...+... +.
T Consensus 870 ~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd 949 (982)
T KOG4653|consen 870 NLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDD 949 (982)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 9999997654333345566667777777655 5788999999998887665432222221 13334444444443 34
Q ss_pred cchhhHHHHHHHh
Q 039940 249 SVLIPALRTVGNI 261 (449)
Q Consensus 249 ~v~~~a~~~l~~l 261 (449)
.++..|+.++-.+
T Consensus 950 ~~klhaql~leei 962 (982)
T KOG4653|consen 950 GLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666433
No 171
>PRK14707 hypothetical protein; Provisional
Probab=97.14 E-value=0.58 Score=51.20 Aligned_cols=400 Identities=15% Similarity=0.096 Sum_probs=212.3
Q ss_pred hhhcHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH-HhcCC
Q 039940 20 KLEILPAMVAGVWS--DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLT-NIASG 96 (449)
Q Consensus 20 ~~~~i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~-~l~~~ 96 (449)
..++|-.+++.+.+ +++..+..+. .|...+... ......+-..|+-..|-.+.+=++ .....+|+..+. .++.
T Consensus 203 ~~q~ia~~lNa~sKWp~~~~c~~aa~-~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~-~~~C~~a~~~lA~rl~~- 278 (2710)
T PRK14707 203 DAQGVATVLNALCKWPDTPDCGNAVS-ALAERLADE-SRLRNELKPQELGNALNALSKWAD-TPVCAAAASALAERLVD- 278 (2710)
T ss_pred chHHHHHHHHHHhcCCCChhHHHHHH-HHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHhh-
Confidence 34667777888764 5666665544 444433332 333445555565555555666666 344455555554 4443
Q ss_pred ChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHH
Q 039940 97 TSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTL 175 (449)
Q Consensus 97 ~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l 175 (449)
.+.-++.+-..+ +...+..|+. ++..+...+...|..=..+++..++.+ +...+...++.+.+-+|..+-+.+...|
T Consensus 279 ~~~l~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~L 356 (2710)
T PRK14707 279 DPGLRKALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSAL 356 (2710)
T ss_pred hHHHHHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHH
Confidence 555555554444 3444444443 666666666655555445566655444 3344566777776777766666666555
Q ss_pred HHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhH
Q 039940 176 SNLCKGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPA 254 (449)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a 254 (449)
..=...++..........+..+++.+. =++..+...+...|..=..++.+..+.+-..|+-..|-.+-+=++..+...+
T Consensus 357 A~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~a 436 (2710)
T PRK14707 357 AERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQA 436 (2710)
T ss_pred HHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHH
Confidence 543333333333333344444444443 3566666666666655444555555544444554444444444788888888
Q ss_pred HHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchh
Q 039940 255 LRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFD 334 (449)
Q Consensus 255 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~ 334 (449)
...|.--..++.+..+. ++..-+...+..++.-+|..+...|+..|..-..+.++..+.+--.++...|-.+-+-.+..
T Consensus 437 a~~lA~~la~d~~l~~~-~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~ 515 (2710)
T PRK14707 437 VSALAGRLAHDTELCKA-LDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTP 515 (2710)
T ss_pred HHHHHHHHhccHHHHhh-cChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcH
Confidence 88877666655554433 33333455555555544777887777777766666666554443334444444444444433
Q ss_pred HH-HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHH
Q 039940 335 IK-KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLV 413 (449)
Q Consensus 335 v~-~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 413 (449)
.. +.+.|.-..+.. .....+.|...++...+-.+-+..+......+...|...+..... ....|
T Consensus 516 ~c~~A~~~lA~rl~~--~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~-------------~~~~L 580 (2710)
T PRK14707 516 ICAEAASALAERVVD--ELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQ-------------LPKDL 580 (2710)
T ss_pred HHHHHHHHHHHHhcc--chhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchh-------------hHHhh
Confidence 33 333344444443 223333333344444455555555555555555555554432221 24445
Q ss_pred HhcchHHHHHHHhcCCCHHHHHHHHHHH
Q 039940 414 EGAEGFKKIEDLKSHGNNGIREKAVTIL 441 (449)
Q Consensus 414 ~~~~~~~~l~~l~~~~~~~i~~~a~~~i 441 (449)
...++-..+..|-..++..-...+...|
T Consensus 581 ~aq~Vs~llNaLSKWP~~~aC~~Aa~~L 608 (2710)
T PRK14707 581 HRQGVVIVLNALSKWPDTAVCAEAVNAL 608 (2710)
T ss_pred hhhHHHHHHHhhccCCCcHHHHHHHHHH
Confidence 5555555666666666655544444433
No 172
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=97.13 E-value=0.0049 Score=48.99 Aligned_cols=144 Identities=15% Similarity=0.180 Sum_probs=101.4
Q ss_pred HHHHHhhC--CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 039940 237 GPLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQA 314 (449)
Q Consensus 237 ~~L~~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 314 (449)
+.++..+. ...+++|..+.-++..+. +...+ -....+-+.+-..+..+ +.+-...++.++..+..+.++....
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~-~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAARE-EFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence 34444443 456778999998888884 22222 22333455566666666 6677888999999998888887777
Q ss_pred HH-HCCChHHHHHHhh--cCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc-CCCHH-HHHHHHHHHHH
Q 039940 315 VI-DAGLIVPLVNLLQ--DAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL-CADPE-IVTVCLKGLEN 388 (449)
Q Consensus 315 l~-~~~~~~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~-~~~~~~~~l~~ 388 (449)
+. ..|+++.+..+.. .++..++..++.+|..-+. + +.++.++...+++.|...++ ++++. ++..|+-+|.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d-~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--D-KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--S-HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--c-HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 76 6799999999999 6788999999999888776 3 44455555668999999995 55555 67777666654
No 173
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.05 E-value=0.12 Score=49.51 Aligned_cols=182 Identities=13% Similarity=0.093 Sum_probs=114.1
Q ss_pred HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940 19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 98 (449)
...+.+..++...+ ++......|+..+.++...- ....+ ..+..+++++.+.+ ..++.+|+..|-.+|.+++
T Consensus 20 ~~~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~F-P~l~~-----~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~ 91 (556)
T PF05918_consen 20 QHEEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHF-PDLQE-----EAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNP 91 (556)
T ss_dssp GGHHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC--GGGHH-----HHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--
T ss_pred cCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC-hhhHH-----HHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHH
Confidence 34456667777766 46888889999999997653 33333 34788999999999 8999999999999999888
Q ss_pred hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc--ccccHHHHHHHHHHHH
Q 039940 99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN--EHARLSMLRIGTWTLS 176 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~a~~~l~ 176 (449)
+....+ ..+|+++|.++++.-...+-.+|..+...+|. +.+..++..+. ...++.+++.++..|.
T Consensus 92 ~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 92 EHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 887766 58999999998877777777777777654432 34556666664 2567888999887775
Q ss_pred HhhcCC-CCC---ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHccc
Q 039940 177 NLCKGK-PQP---PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSD 221 (449)
Q Consensus 177 ~l~~~~-~~~---~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~ 221 (449)
.=...- +.. ..+...-++..+.+.|.+-..+-....+..|..+-.
T Consensus 159 ~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 159 EKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp HHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred HHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 433332 111 133445566667777765333434445555555544
No 174
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.03 E-value=0.071 Score=47.71 Aligned_cols=191 Identities=15% Similarity=0.146 Sum_probs=116.1
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhh--cCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC--CCCC
Q 039940 110 VPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLH--EEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG--KPQP 185 (449)
Q Consensus 110 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~--~~~~ 185 (449)
+.-.+..+...+...|+.++..+.++....... +.+.. ...+..+.+.+++. ..+-+..|+.++.-++-. ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCcc
Confidence 334444555567889999999999887655332 22221 12355566666433 334455666766666655 2344
Q ss_pred ChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHcc---cCChhHHHHHHHhCcHHHHH--HhhCC----------CCC
Q 039940 186 PFDQVRPVLPALAQLIHLD--DEEVLRNVCWTLSNLS---DGTNDKIQAVIEAGVCGPLV--ELLGH----------PSP 248 (449)
Q Consensus 186 ~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~---~~~~~~~~~~~~~~~~~~L~--~ll~~----------~~~ 248 (449)
.........|.|.+.+... ...++..++.||+-++ ...++.....+ ..++.+. ...+. +++
T Consensus 123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 5566688889999988765 3566667776666554 33332222111 1233221 22222 124
Q ss_pred cchhhHHHHHHHhhcCChh-hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 249 SVLIPALRTVGNIVTGDDF-QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 249 ~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
.+...|+.+.+-+...-+. ...... ...++.|..+|.+. +..||..|..+|+-+..
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 5788888888887765444 222222 34689999999999 99999999999987754
No 175
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.01 E-value=0.038 Score=49.43 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=84.6
Q ss_pred CcHHH-HHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHH
Q 039940 234 GVCGP-LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQ 311 (449)
Q Consensus 234 ~~~~~-L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~ 311 (449)
++++. +.+.++++++.+|..|+.|+|-.+--+.+... ..++.+...++.+ +..++..|+.++..+.. +....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 34443 44778899999999999999999877654433 2466788888777 89999999999999985 33222
Q ss_pred HHHHH-------HCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940 312 IQAVI-------DAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 312 ~~~l~-------~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 350 (449)
..... ...++..+...+.+.+++++..|+..++.+...+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 22222 2457788888999999999999999999998875
No 176
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.034 Score=56.46 Aligned_cols=147 Identities=15% Similarity=0.151 Sum_probs=115.9
Q ss_pred hhhchHHHHHHhhcC----CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhc
Q 039940 189 QVRPVLPALAQLIHL----DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG-HPSPSVLIPALRTVGNIVT 263 (449)
Q Consensus 189 ~~~~~l~~l~~ll~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~ 263 (449)
....+.|.++...++ +||+++..|.-+++.+.--+.... + .-++.|+..|. ++++.+|.++.-+++.++.
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc----e-s~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC----E-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH----H-HHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 345677888888853 579999999999998875544322 2 34688888887 6889999999999999987
Q ss_pred CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHH
Q 039940 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAI 343 (449)
Q Consensus 264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL 343 (449)
..+...+. .-+.|...|.+. ++.+|+.|..+++++...+ .+--.|.+..+..++.+++..++..|-..+
T Consensus 991 ~fpnlie~-----~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen 991 RFPNLIEP-----WTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFF 1059 (1251)
T ss_pred hcccccch-----hhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHH
Confidence 66655443 345688888888 9999999999999997643 333469999999999999999999999888
Q ss_pred HHhhccCC
Q 039940 344 SNATKAGT 351 (449)
Q Consensus 344 ~~l~~~~~ 351 (449)
..+...++
T Consensus 1060 ~Els~k~n 1067 (1251)
T KOG0414|consen 1060 KELSSKGN 1067 (1251)
T ss_pred HHhhhccc
Confidence 88877653
No 177
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.96 E-value=0.69 Score=48.93 Aligned_cols=397 Identities=11% Similarity=0.030 Sum_probs=201.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK 102 (449)
Q Consensus 23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 102 (449)
-+..++..+..+...+|..|+++|..+......-.....++.++... +.++. ..++++|+..++......++...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R----~~Dss-asVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR----LNDSS-ASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh----hccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence 35667777787889999999999999986542222223333333333 34445 69999999999987775666554
Q ss_pred HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940 103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
.+. ..+..-..+....+|..++.++..+|...|.+..... +...++... .++...++.-++.++.++-..+
T Consensus 892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~---~cakmlrRv-~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD---MCAKMLRRV-NDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH---HHHHHHHHh-ccchhHHHHHHHHHHHHHhccC
Confidence 443 4455555667889999999999999998887644331 222333333 3444558999999999998877
Q ss_pred CCC--ChhhhhchHHHHHH-------hhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHh---CcHHHHHHhhC------
Q 039940 183 PQP--PFDQVRPVLPALAQ-------LIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA---GVCGPLVELLG------ 244 (449)
Q Consensus 183 ~~~--~~~~~~~~l~~l~~-------ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~ll~------ 244 (449)
+.. .......-++..+. +.....+.+....+..=... ......+.+... ..+..+..++.
T Consensus 963 ~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~--~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev 1040 (1692)
T KOG1020|consen 963 VPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLK--TMKESVKPVALAKVTHVLNLLTHCLVEKISEV 1040 (1692)
T ss_pred CCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhh--hhhhhhhHHHHhhcchHHHHHHHHHHHHHHhh
Confidence 322 22222222222111 11122222222222111100 000000101111 11222222221
Q ss_pred ------CCCCcchhh-HHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC----CchhHHHHHHHHHHHHhc---CCHH
Q 039940 245 ------HPSPSVLIP-ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN----HKKSIKKESCWTVSNITA---GNRK 310 (449)
Q Consensus 245 ------~~~~~v~~~-a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~~v~~~a~~~l~nl~~---~~~~ 310 (449)
....+++.. .+.+|.-++...+. +.....+..|...|.+. ....+..+.+..+-.... ..++
T Consensus 1041 ~~~~~~~~~~~~~~~~~lstL~~FskirP~----Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~se 1116 (1692)
T KOG1020|consen 1041 ESDDMNEEESEVRLLAYLSTLFVFSKIRPQ----LLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSE 1116 (1692)
T ss_pred hhHhhhcccchhHHHHHHHHHHHHHhcCch----hccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchH
Confidence 122233333 34445555544332 22223444455555443 123333334443333322 1111
Q ss_pred HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc--CCHHHHHHHHHc--CChHHHHhhccCC----CHHHHHHH
Q 039940 311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA--GTQEQIKYLVRE--GCIKPLCDLLLCA----DPEIVTVC 382 (449)
Q Consensus 311 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~--~~~~~L~~ll~~~----~~~~~~~~ 382 (449)
. ++ ..+=+.|+.++-.........|..|++.++.. .+....+..... +.++.+-.-..++ +.......
T Consensus 1117 s---fL-~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rs 1192 (1692)
T KOG1020|consen 1117 S---FL-ASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRS 1192 (1692)
T ss_pred H---HH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHH
Confidence 1 11 12334566666556666677777888888773 233333333321 2233322222222 22445667
Q ss_pred HHHHHHHHHhhhhhhccCCCCCcccH-HHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940 383 LKGLENILKVGEAKKNRGSTIGDVNQ-YARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL 446 (449)
Q Consensus 383 ~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~ 446 (449)
+.++.-++++++-.....+ +..+. +.. .-..+.+..|.-+..+.+.+++.+|..-+-.++-
T Consensus 1193 iftlG~l~Ryfdf~~~~~~--g~~~~~~~~-~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci 1254 (1692)
T KOG1020|consen 1193 IFTLGLLSRYFDFPKPSND--GKTFLQEGE-TLKEKVLILLMYFSKDKDGELRRKALINLGFICI 1254 (1692)
T ss_pred HHHHHHHHHhccCCCccCC--Cccchhhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 7777777776544332211 11110 122 2234556777777778888889888887766543
No 178
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.95 E-value=0.0044 Score=45.65 Aligned_cols=70 Identities=17% Similarity=0.287 Sum_probs=58.3
Q ss_pred ChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHH
Q 039940 363 CIKPLCDLLL-CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTIL 441 (449)
Q Consensus 363 ~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i 441 (449)
++..|+.++. +.|+.+...|+.=|..+++..+.. ...+.+.|+.+.+..|+.|+|++|+..|...+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5788889884 457888889999999999988764 56778999999999999999999999999999
Q ss_pred HHhc
Q 039940 442 ETYW 445 (449)
Q Consensus 442 ~~~~ 445 (449)
+++.
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 179
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.88 E-value=0.082 Score=48.36 Aligned_cols=147 Identities=11% Similarity=0.158 Sum_probs=104.4
Q ss_pred CHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHH-HHHHcccCChhHHHH
Q 039940 151 ALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCW-TLSNLSDGTNDKIQA 229 (449)
Q Consensus 151 ~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~-~l~~l~~~~~~~~~~ 229 (449)
.+..+++.+.++.++..+..|++.|..++...+.+-+...+-++..+++.-.+.++++...|.. |+..++...+...
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-- 407 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-- 407 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--
Confidence 4456777775668889999999999999999877777766777777777777777766665554 4445555555321
Q ss_pred HHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 230 VIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 230 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
+..+..++.+.+......++..+..++..-+...-..+-..+.|.+++...+. +..||+.|.++|..+..
T Consensus 408 ------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 408 ------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 33444555556777777788888888765332211222357899999999999 89999999999998864
No 180
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.38 Score=44.57 Aligned_cols=161 Identities=14% Similarity=0.120 Sum_probs=92.4
Q ss_pred HHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh-CCCCCcchh
Q 039940 174 TLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL-GHPSPSVLI 252 (449)
Q Consensus 174 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~ 252 (449)
.+..+.......+.......+..+..-..+++..++..++++|+|.+...++....... ..+..++.-| ...+.+|..
T Consensus 240 f~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~l 318 (533)
T KOG2032|consen 240 FFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQL 318 (533)
T ss_pred HHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHH
Confidence 34444443322222333444445555555677899999999999999986665554433 3445555444 445688999
Q ss_pred hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc--C--CHHHHHHHHHCCChHHHHHHh
Q 039940 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA--G--NRKQIQAVIDAGLIVPLVNLL 328 (449)
Q Consensus 253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--~--~~~~~~~l~~~~~~~~L~~ll 328 (449)
+++.+|..+...-....-..+-..+.-.+..+..+. ++++|..|...++.++. + -.+....-+..+..+.+ --+
T Consensus 319 eam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ll-lhl 396 (533)
T KOG2032|consen 319 EAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLL-LHL 396 (533)
T ss_pred HHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccce-eee
Confidence 999988777543111000111123455677778888 99999999888888774 2 22222222333344433 335
Q ss_pred hcCchhHHH
Q 039940 329 QDAEFDIKK 337 (449)
Q Consensus 329 ~~~~~~v~~ 337 (449)
.+.++.+..
T Consensus 397 ~d~~p~va~ 405 (533)
T KOG2032|consen 397 QDPNPYVAR 405 (533)
T ss_pred CCCChHHHH
Confidence 555655543
No 181
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.85 E-value=0.37 Score=48.31 Aligned_cols=176 Identities=16% Similarity=0.203 Sum_probs=116.8
Q ss_pred HHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH--HHHHHHHHCCChHHHHHHhhcCc-h
Q 039940 257 TVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNR--KQIQAVIDAGLIVPLVNLLQDAE-F 333 (449)
Q Consensus 257 ~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~--~~~~~l~~~~~~~~L~~ll~~~~-~ 333 (449)
+++++...++.....+++.+++..+...++.-....++..+...++|++...+ +.......... ..+..++...+ .
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence 78888988999999999999999999999866567899999999999986332 21111111111 23333444433 3
Q ss_pred hHHHHHHHHHHHhhccCCH--------HHHHHHHH--------------cCChHH-HHhhcc-CCCHHHHHHHHHHHHHH
Q 039940 334 DIKKEAAWAISNATKAGTQ--------EQIKYLVR--------------EGCIKP-LCDLLL-CADPEIVTVCLKGLENI 389 (449)
Q Consensus 334 ~v~~~a~~aL~~l~~~~~~--------~~~~~l~~--------------~~~~~~-L~~ll~-~~~~~~~~~~~~~l~~l 389 (449)
+.-..|+..|+.+...+++ .....+.+ ...+.. +..++. +..+..+.+|++++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 7788888888888876431 00111111 112333 444444 34667788999999999
Q ss_pred HHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC-CCHHHHHHHHHHHHHhcC
Q 039940 390 LKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH-GNNGIREKAVTILETYWL 446 (449)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~~~a~~~i~~~~~ 446 (449)
++..++ +.....+.|++..+..+... ...++++.+..+++.+..
T Consensus 653 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 697 (699)
T KOG3665|consen 653 LEQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCEN 697 (699)
T ss_pred HHcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcccc
Confidence 977654 46778888999888888322 366678888888877654
No 182
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.2 Score=46.22 Aligned_cols=268 Identities=13% Similarity=0.123 Sum_probs=142.6
Q ss_pred CCChHHHHHhh----CCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940 107 HGAVPIFVKLL----ASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 107 ~~~i~~L~~~l----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
.|.+..++..+ .+++..++..|++.|+|.+..-|.-.. -.....+..++..|.++.+.+|+..++.+|..+....
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~-th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVR-THKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHH-HhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 35555554444 357789999999999999988554222 2233456667777767778999999999988877665
Q ss_pred CCCChh-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHH-HHHH--hCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 183 PQPPFD-QVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQ-AVIE--AGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 183 ~~~~~~-~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
.+.... ..-++.-.+..+..+.+++.+.++...++.++.-.....+ .+.+ .+....++..+.++++.+ ..||+..
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~ 410 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSE 410 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHH
Confidence 333322 2244555677788888999999988888777643221111 1221 022234444455555543 4567766
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHH---HHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhH
Q 039940 259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKES---CWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDI 335 (449)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a---~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v 335 (449)
...+..+-. .+.. .++++... .. +.. +..+ -|++ .+....++....+.. ....++++.=+.+
T Consensus 411 ~~~c~p~l~-rke~--~~~~q~~l----d~-~~~-~~q~Fyn~~c~-~L~~i~~d~l~~~~t-----~~~~~f~sswe~v 475 (533)
T KOG2032|consen 411 LRTCYPNLV-RKEL--YHLFQESL----DT-DMA-RFQAFYNQWCI-QLNHIHPDILMLLLT-----EDQHIFSSSWEQV 475 (533)
T ss_pred HHhcCchhH-HHHH--HHHHhhhh----HH-hHH-HHHHHHHHHHH-HHhhhCHHHHHHHHH-----hchhheecchHHH
Confidence 666543221 1111 11222111 11 110 1111 1111 121223332222221 1112233333355
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940 336 KKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK 391 (449)
Q Consensus 336 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~ 391 (449)
+..+..--.+...+-.+..+.+.-.......+-.+...+-++++..+..++..+..
T Consensus 476 r~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 476 REAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 55554444444444333333333333345666677778889999999999887654
No 183
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.81 E-value=0.0018 Score=47.67 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=61.3
Q ss_pred CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 276 GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 276 ~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
.++..|+.+|..+.|+.+..-||.=|+.++..-|..+..+-+.|+=..+++++.+++++|+.+|+.|+..+...
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 46888999995544888889999999999987777776676789999999999999999999999999988753
No 184
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.79 E-value=0.12 Score=46.37 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=111.5
Q ss_pred CCHHHHH-HhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-Cch
Q 039940 65 GIVPRFV-EFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGC 142 (449)
Q Consensus 65 ~~i~~L~-~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~ 142 (449)
+++..++ ..+++.+ +.+++.|+.+|+-.|--+.+.... .++.+...++.++..++..|+.++..+.... ...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455554 5678888 899999999999999855543332 3677888887789999999999999887321 111
Q ss_pred hhhH-------hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----CCCHHHHHH
Q 039940 143 RNLV-------LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH----LDDEEVLRN 211 (449)
Q Consensus 143 ~~~~-------~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~----~~~~~~~~~ 211 (449)
-+.. .....+..+.+.+ .+.+++++..++..+..|.-.+.... ...++..|+-+-- .++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1111 1123455556666 56688999999999999887763333 1233333333322 234666666
Q ss_pred HHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC
Q 039940 212 VCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS 247 (449)
Q Consensus 212 ~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 247 (449)
.-..+-..+..++.+.. .+...+++.+..+.....
T Consensus 176 L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhCcc
Confidence 66677777776665544 555567777777766543
No 185
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.77 E-value=0.092 Score=48.04 Aligned_cols=173 Identities=15% Similarity=0.182 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHhcC-CChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHH
Q 039940 80 PRLQFEAAWVLTNIAS-GTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLA 157 (449)
Q Consensus 80 ~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ 157 (449)
.+-+..|+.-|..+.. ++-...+... ..++..+++.|.+ .+...+..|+++|..++..+|..-..- ..-++..+++
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Ds-tE~ai~K~Le 378 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDS-TEIAICKVLE 378 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhch-HHHHHHHHHH
Confidence 4666677775555544 3322233222 2456788888887 788999999999999998775421100 1123445555
Q ss_pred HHcccccHHHHHHHH-HHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh-hHHHHHHHhCc
Q 039940 158 QLNEHARLSMLRIGT-WTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN-DKIQAVIEAGV 235 (449)
Q Consensus 158 ~l~~~~~~~~~~~a~-~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~ 235 (449)
.- .+...++...|. .|+..++...|.. .+..+..++.+.|.+.-..++..+..++..-+ +....++ .++
T Consensus 379 aa-~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~di 449 (516)
T KOG2956|consen 379 AA-KDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDI 449 (516)
T ss_pred HH-hCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhh
Confidence 55 444455555554 4455666665543 33445556666777777777777777775533 2112222 278
Q ss_pred HHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 039940 236 CGPLVELLGHPSPSVLIPALRTVGNIVT 263 (449)
Q Consensus 236 ~~~L~~ll~~~~~~v~~~a~~~l~~l~~ 263 (449)
.|.++..-.+.+..+|+.|++||..+..
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 8899999899999999999999977753
No 186
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.012 Score=54.84 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=78.8
Q ss_pred CcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 039940 234 GVCGPLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312 (449)
Q Consensus 234 ~~~~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~ 312 (449)
+++..++.. +++.+.++|..|..+|+-+|..+. ..+...+++|..++++.||...+.+|+-.|.++-...
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 556666666 667888999999999998887643 3566777888777689999999999998887553322
Q ss_pred HHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHH
Q 039940 313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQE 353 (449)
Q Consensus 313 ~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 353 (449)
.+..|-.++.+...-||+.|+.+++-+...++++
T Consensus 622 -------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 622 -------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred -------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 3445566677778889999999999888776554
No 187
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.11 Score=50.36 Aligned_cols=133 Identities=18% Similarity=0.171 Sum_probs=88.3
Q ss_pred HHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940 237 GPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALL-INNHKKSIKKESCWTVSNITAGNRKQIQAV 315 (449)
Q Consensus 237 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 315 (449)
+.+-.++.+.++-+|...+..++---.+.. ..+++..|+..- ++. +.+||+.|.-+|+-++..+++.
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~---- 589 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQ---- 589 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhccccccc-chHHHHHHHHHheeeEecChhh----
Confidence 344455666677777776665532222211 234566677774 455 8999999999999998888763
Q ss_pred HHCCChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940 316 IDAGLIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 316 ~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
.+..+.+|..+ ++.||..++.+|+-.+.+....- ++..|..+..+...-||+.|+-++.-++-...
T Consensus 590 -----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 590 -----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred -----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 45556666554 99999999999998777532211 34445555666677789998888877765443
No 188
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.64 Score=45.40 Aligned_cols=341 Identities=16% Similarity=0.072 Sum_probs=181.3
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHhcC--CChhhhHHHHhCCCh
Q 039940 40 LEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE-------DYPRLQFEAAWVLTNIAS--GTSVNTKVLIDHGAV 110 (449)
Q Consensus 40 ~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i 110 (449)
..|+..+..+.++.++ . .-.|+++.++..+... +...-.+-|++.++++.. ..+....-+++.=++
T Consensus 388 laal~fl~~~~sKrke---~--TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv 462 (970)
T COG5656 388 LAALFFLIISKSKRKE---E--TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV 462 (970)
T ss_pred HHHHHHHHHHhcccch---h--hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 3455555555443211 1 1258899999988321 123445567777777665 223333334444456
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC--Chh
Q 039940 111 PIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP--PFD 188 (449)
Q Consensus 111 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~ 188 (449)
+.++..++++.--++.+++..+..+..+ +++...-..+.....+++ ++.+-.++..|+.++..+..+.... -..
T Consensus 463 ~hv~P~f~s~ygfL~Srace~is~~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sa 538 (970)
T COG5656 463 NHVIPAFRSNYGFLKSRACEFISTIEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSA 538 (970)
T ss_pred HHhhHhhcCcccchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence 7777788888889999999999999443 222332334556667777 4567788888999998888876211 112
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHH-cccC----ChhHHHHHHHhCcHHHHHHhhCCCC------CcchhhHHHH
Q 039940 189 QVRPVLPALAQLIHLDDEEVLRNVCWTLSN-LSDG----TNDKIQAVIEAGVCGPLVELLGHPS------PSVLIPALRT 257 (449)
Q Consensus 189 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~-l~~~----~~~~~~~~~~~~~~~~L~~ll~~~~------~~v~~~a~~~ 257 (449)
.+.+.++.++.+-+.-+.+....++..+.. .+.. .++....+.+ .++.....++..++ .+-...|.+.
T Consensus 539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGi 617 (970)
T COG5656 539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGI 617 (970)
T ss_pred hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence 234555555555555566666555554432 2221 1111221221 23334444444331 1223334444
Q ss_pred HHHhhc-----CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCc
Q 039940 258 VGNIVT-----GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAE 332 (449)
Q Consensus 258 l~~l~~-----~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 332 (449)
|.-+.+ .+....-.-......|.+--++++. -.++-.+|+-.+-+.+..+.+.- -+.-|+.+.+.+++.+..
T Consensus 618 L~T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~ 694 (970)
T COG5656 618 LRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEI 694 (970)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccc
Confidence 433321 1111111112334555555566666 67788888888887765332211 112345666666666655
Q ss_pred h-hHHHHHHHHHHHhhccCCHHHHHH-HHHcCChHHHHhhccCCCH--HHHHHHHHHHHHHHHhh
Q 039940 333 F-DIKKEAAWAISNATKAGTQEQIKY-LVREGCIKPLCDLLLCADP--EIVTVCLKGLENILKVG 393 (449)
Q Consensus 333 ~-~v~~~a~~aL~~l~~~~~~~~~~~-l~~~~~~~~L~~ll~~~~~--~~~~~~~~~l~~l~~~~ 393 (449)
. ...+.++-++.|+...|..+..+. +.-.-..+.+...+.+++. +=...+++++..++-..
T Consensus 695 t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~ 759 (970)
T COG5656 695 TAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNI 759 (970)
T ss_pred hhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHc
Confidence 3 677888999999998874433211 0001123344445555544 22445556665555433
No 189
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.74 E-value=0.079 Score=44.98 Aligned_cols=194 Identities=13% Similarity=0.069 Sum_probs=119.9
Q ss_pred CCcchhhHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHHh-------ccCC-chhHHHHHHHHH---HHHhcCCHHHHHH
Q 039940 247 SPSVLIPALRTVGNIVTGDDFQTQCVIN-HGAVPYLLALL-------INNH-KKSIKKESCWTV---SNITAGNRKQIQA 314 (449)
Q Consensus 247 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~ll-------~~~~-~~~v~~~a~~~l---~nl~~~~~~~~~~ 314 (449)
+++.|+.|+.-|+.--...++....+.. .|.+..|++=+ ..+. ....-...|.+| ..+++ .|+.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 4455666666665554444444444443 34444443222 2210 122222333333 33434 4577788
Q ss_pred HHHCCChHHHHHHhhcC-----chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 039940 315 VIDAGLIVPLVNLLQDA-----EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI 389 (449)
Q Consensus 315 l~~~~~~~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l 389 (449)
+++..+.-.|...++.. -..+|-..+++++.++...+++...++.+.+.++...+.++.+++-.+..|..++.++
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99988887888877654 3578999999999999998999999999999999999999999888899999999999
Q ss_pred HHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940 390 LKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL 446 (449)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~ 446 (449)
+..+...+..... ...|.....-. -..+..+...+++.+-+.+.....+..+
T Consensus 167 L~dd~GL~yiC~t---~eRf~av~~vL--~~mV~~l~~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 167 LLDDVGLNYICQT---AERFFAVAMVL--NKMVEQLVKQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHSHHHHHHHTSS---HHHHHHHHHHH--HHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred HcchhHHHHHhcC---HHHHHHHHHHH--HHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 9888776654432 12222222222 2445667888888887776666555443
No 190
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.66 E-value=0.041 Score=51.45 Aligned_cols=255 Identities=11% Similarity=0.067 Sum_probs=142.7
Q ss_pred HHHHHHHhcCCChh-hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccccc
Q 039940 86 AAWVLTNIASGTSV-NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHAR 164 (449)
Q Consensus 86 a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~ 164 (449)
+-..|..+....+. .....++...+..|+.++.++|+.-|+....+|.++-+.-+..|..+. ......+.+.+.....
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~ 188 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETER 188 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCccc
Confidence 44455555442211 133345556788999999999999999999999998765555666553 3444556666655556
Q ss_pred HHHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh
Q 039940 165 LSMLRIGTWTLSNLCKGKPQPP-FDQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL 242 (449)
Q Consensus 165 ~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l 242 (449)
..-...++.+++.+..+...+- .....-....++.+...+. .........|+......++.....+ +..++..
T Consensus 189 ~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~ 263 (409)
T PF01603_consen 189 HNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKH 263 (409)
T ss_dssp -STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHh
Confidence 6667778888888888764333 3333444456666666554 3345555566666655555433322 2233333
Q ss_pred hCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHC---C
Q 039940 243 LGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDA---G 319 (449)
Q Consensus 243 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~---~ 319 (449)
=-..++.-...-+.-+..+...-+...-.-+...++..+...+++. +..|.+.|+....| +... .++.. .
T Consensus 264 WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n-----~~~~-~li~~~~~~ 336 (409)
T PF01603_consen 264 WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNN-----EYFL-SLISQNSRV 336 (409)
T ss_dssp S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGS-----HHHH-HHHHCTHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCC-----HHHH-HHHHhChHH
Confidence 2223333333344455555543222211122334677888888888 88888888665432 2222 22221 2
Q ss_pred ChHHHHHHhhc----C-chhHHHHHHHHHHHhhccCCHHH
Q 039940 320 LIVPLVNLLQD----A-EFDIKKEAAWAISNATKAGTQEQ 354 (449)
Q Consensus 320 ~~~~L~~ll~~----~-~~~v~~~a~~aL~~l~~~~~~~~ 354 (449)
++|.+...+.. + +..++..|..++.-+... +++.
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~-d~~l 375 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM-DPKL 375 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT-SHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-CHHH
Confidence 56666666533 3 788999998888888775 4443
No 191
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.65 E-value=0.056 Score=46.12 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc-CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhc
Q 039940 293 IKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD-AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL 371 (449)
Q Consensus 293 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll 371 (449)
....|...|.-++--.|.....+-+...+..+++++.. ..+.++..++.+|..+... ++.+.+.|.+.+++..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld-~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLD-SPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc-ChHHHHHHHHhCCHHHHHHHH
Confidence 34456677777766455666677788999999999954 5789999999999999887 678888899999999999999
Q ss_pred cCC--CHHHHHHHHHHHHHHHHhhhh
Q 039940 372 LCA--DPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 372 ~~~--~~~~~~~~~~~l~~l~~~~~~ 395 (449)
+++ +.+++.++++.|+-++--...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~E~~ 211 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMPETP 211 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcccCC
Confidence 875 678999999999877755443
No 192
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.59 E-value=0.011 Score=56.30 Aligned_cols=144 Identities=15% Similarity=0.107 Sum_probs=104.4
Q ss_pred cHHHHHHhhCC----CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940 235 VCGPLVELLGH----PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK 310 (449)
Q Consensus 235 ~~~~L~~ll~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 310 (449)
+-|.+.....+ .+++++..|.-+|..+.+-+.+... .-+|.++..|+..++|.+|..|.-.++.++..-..
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 34444444444 5778888888888877655444332 36889999998444999999999999998764333
Q ss_pred HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 039940 311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENIL 390 (449)
Q Consensus 311 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~ 390 (449)
.+.. .-..|.+-|.+.+..||+.|..++.++...|. +.-.|.+..+..++.++|.++...|--.+..+.
T Consensus 968 ~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 968 TADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 3332 34578888999999999999999999988642 123577888888899999888887777777666
Q ss_pred Hhhh
Q 039940 391 KVGE 394 (449)
Q Consensus 391 ~~~~ 394 (449)
..+.
T Consensus 1037 ~KdN 1040 (1128)
T COG5098 1037 KKDN 1040 (1128)
T ss_pred hccc
Confidence 5543
No 193
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.53 E-value=1.1 Score=45.39 Aligned_cols=210 Identities=16% Similarity=0.191 Sum_probs=127.7
Q ss_pred HhCCChHHHHHhhCC-----CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc---cccc----HHHHHHHH
Q 039940 105 IDHGAVPIFVKLLAS-----PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN---EHAR----LSMLRIGT 172 (449)
Q Consensus 105 ~~~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~----~~~~~~a~ 172 (449)
.+.|++..++.++.+ .........+..|...+.- +.+|+.+.+.++++.++..+. .... .++.+..+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 346889999999875 3345555566666665544 678888889999999998885 2222 56666666
Q ss_pred HHHHHhhcCCCCCChh-------------hhhchHHHHHHhhcC----CCHHHHHHHHHHHHHcccCChhHHHHHHHhCc
Q 039940 173 WTLSNLCKGKPQPPFD-------------QVRPVLPALAQLIHL----DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGV 235 (449)
Q Consensus 173 ~~l~~l~~~~~~~~~~-------------~~~~~l~~l~~ll~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 235 (449)
.++-.+.......... ....-+..++..+.+ .++.+....++.|.+++.++++..+.+++.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 6655554433111110 122335566666654 468999999999999999998887766653
Q ss_pred HHHHHHhhCCC--CCcchhhHHHHHHHhhcCC------hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 039940 236 CGPLVELLGHP--SPSVLIPALRTVGNIVTGD------DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG 307 (449)
Q Consensus 236 ~~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~ 307 (449)
+...+++=.-+ ...--...+.+++.++.+- ...++.+++.|++...+..+... -+.. .+. .
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~--------~~~--~ 339 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL--------KNT--D 339 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc--------ccC--C
Confidence 22222221111 1111123355566665432 34567778889999888888766 4433 111 3
Q ss_pred CHHHHHHHHHCCChHHHHHHhh
Q 039940 308 NRKQIQAVIDAGLIVPLVNLLQ 329 (449)
Q Consensus 308 ~~~~~~~l~~~~~~~~L~~ll~ 329 (449)
++ .....+....+|..+++|.
T Consensus 340 s~-eWk~~l~~psLp~iL~lL~ 360 (802)
T PF13764_consen 340 SP-EWKEFLSRPSLPYILRLLR 360 (802)
T ss_pred CH-HHHHHhcCCcHHHHHHHHH
Confidence 33 3445566677777777764
No 194
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.50 E-value=0.85 Score=46.16 Aligned_cols=237 Identities=15% Similarity=0.164 Sum_probs=144.7
Q ss_pred chHHHHHHhhcC-----CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC----CCC----CcchhhHHHHH
Q 039940 192 PVLPALAQLIHL-----DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG----HPS----PSVLIPALRTV 258 (449)
Q Consensus 192 ~~l~~l~~ll~~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~----~~~----~~v~~~a~~~l 258 (449)
+++..++.++.+ .+.+....++..+...+.-. .+.+.+++.+.++.|+..+. .+. ..+.+..+.++
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 677777777764 23456666667776666554 45566888999998888774 333 56666677666
Q ss_pred HHhhcCChhh-HH---HHH--------hcCCHHHHHHHhccCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH
Q 039940 259 GNIVTGDDFQ-TQ---CVI--------NHGAVPYLLALLINNH---KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVP 323 (449)
Q Consensus 259 ~~l~~~~~~~-~~---~~~--------~~~~l~~L~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~ 323 (449)
..+....... .. ... ...-+..+++.+.++. ++.+....+..|.+++.++++..+.+++ .+..
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~p 273 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFKP 273 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHHH
Confidence 6665331110 00 001 1112566666665441 5788899999999999999888877766 2222
Q ss_pred HHHHhhc--C-chhHHHHHHHHHHHhhccC-----CHHHHHHHHHcCChHHHHhhccCC--------CHHH--------H
Q 039940 324 LVNLLQD--A-EFDIKKEAAWAISNATKAG-----TQEQIKYLVREGCIKPLCDLLLCA--------DPEI--------V 379 (449)
Q Consensus 324 L~~ll~~--~-~~~v~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~~~~L~~ll~~~--------~~~~--------~ 379 (449)
.+++=.. . .++- ..-+.+++.++.+- .....+.+++.|++...++++... +++. .
T Consensus 274 ~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 274 YLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred hcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 2222111 1 1111 23356666666542 235567788899998888877432 2222 3
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH-hcCCCHHHHHHHHHHHHHhcC
Q 039940 380 TVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL-KSHGNNGIREKAVTILETYWL 446 (449)
Q Consensus 380 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~i~~~a~~~i~~~~~ 446 (449)
..++..|.-++..... .+.+...+++..+..| +.+....|-..|..+++..-+
T Consensus 353 p~iL~lL~GLa~gh~~--------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 353 PYILRLLRGLARGHEP--------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHHhcCHH--------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 4577777777765443 2333456678888888 555577888899888886543
No 195
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=0.21 Score=48.31 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=79.3
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh
Q 039940 64 AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143 (449)
Q Consensus 64 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 143 (449)
.|.+..+++...+++ ..++..++.+|..+..... .++.-+-.++...+..-+.+..+.+|.+|+.+|..+-++...-
T Consensus 84 ~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKD-KKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 466777777778888 7999999999999997333 3333444466777777777888999999999999995433211
Q ss_pred hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHH
Q 039940 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLS 176 (449)
Q Consensus 144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~ 176 (449)
+..+...+...+..+++++|++.++..+.
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 33466778888888999999998875544
No 196
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.35 E-value=0.51 Score=39.57 Aligned_cols=139 Identities=9% Similarity=0.138 Sum_probs=99.8
Q ss_pred hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhcc----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHH
Q 039940 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLIN----NHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNL 327 (449)
Q Consensus 253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~l 327 (449)
.|+..+..++++ ++.+..++++.+--.+..+|.. .....+|-.+.++++.+.. ++.+.+..+...+++|..++.
T Consensus 98 naL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 98 NALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 344455555555 6677778887776666666643 2256799999999999997 666777888899999999999
Q ss_pred hhcCchhHHHHHHHHHHHhhccCCHHHHHHHHH--------cCChHH-HHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940 328 LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR--------EGCIKP-LCDLLLCADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 328 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~~~~~~-L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
+..++...+..|...+..+... .....++.+ ..++.. +..+.+.+++.+.+.++.+..++.....
T Consensus 177 me~GSelSKtvA~fIlqKIlld--D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLD--DVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhc--cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 9999999999999999999875 233333222 112232 3344566788888999988888876543
No 197
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.34 E-value=0.026 Score=46.61 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=79.1
Q ss_pred hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC--------CCCHHHHHHHHHHHH
Q 039940 20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR--------EDYPRLQFEAAWVLT 91 (449)
Q Consensus 20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--------~~~~~~~~~a~~~L~ 91 (449)
.......+++.+++..... ..+..|...+........+.+++.|++..|+++|.. ....+.+..++.|+.
T Consensus 64 ~~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clk 141 (187)
T PF06371_consen 64 AKSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLK 141 (187)
T ss_dssp -CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHH
Confidence 3455667788887755432 334444444443323456788889999999998752 122578899999999
Q ss_pred HhcCCChhhhHHHHh-CCChHHHHHhhCCCChHHHHHHHHHHHHHh
Q 039940 92 NIASGTSVNTKVLID-HGAVPIFVKLLASPSDDVREQAVWALGNIV 136 (449)
Q Consensus 92 ~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 136 (449)
.+.. +......++. .+++..++..|.+++..++..++.+|..+|
T Consensus 142 al~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 142 ALMN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHTS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9998 5555666665 589999999999999999999999999886
No 198
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.32 E-value=1.9 Score=45.86 Aligned_cols=294 Identities=15% Similarity=0.101 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccc----ccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHh
Q 039940 125 REQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH----ARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQL 200 (449)
Q Consensus 125 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~l 200 (449)
...++.+|.-++...|..- ....+..+-..|... ....+..+.+.++....---++........+=..|.++
T Consensus 1054 ~~~~lstL~~FskirP~Ll----t~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~ 1129 (1692)
T KOG1020|consen 1054 LLAYLSTLFVFSKIRPQLL----TKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKR 1129 (1692)
T ss_pred HHHHHHHHHHHHhcCchhc----cHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 3455666777766555431 112222333333222 34455566666555544333444444445555566666
Q ss_pred hcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh---CCC--------CCcchhhHHHHHHHhhcCCh---
Q 039940 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL---GHP--------SPSVLIPALRTVGNIVTGDD--- 266 (449)
Q Consensus 201 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll---~~~--------~~~v~~~a~~~l~~l~~~~~--- 266 (449)
+-..+......+..|++.++..-..... ++. .++......+ ++. ........+.++|-++++.+
T Consensus 1130 i~k~g~a~V~~~vsCl~sl~~k~~~~~~-~v~-~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~ 1207 (1692)
T KOG1020|consen 1130 IVKMGMATVVEAVSCLGSLATKRTDGAK-VVK-ACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPK 1207 (1692)
T ss_pred HHhcchHHHHHHHHHHHHHHhhhccchH-HHH-HHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCC
Confidence 6666777777888888888753211111 111 1222222222 222 22345667888888887421
Q ss_pred ----h----hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhH--H
Q 039940 267 ----F----QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDI--K 336 (449)
Q Consensus 267 ----~----~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v--~ 336 (449)
. ........+++..|.-+.+.. +..+|..|...++.+|...+. .+.+..+...+...+.+.+.+. +
T Consensus 1208 ~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~---l~~~~~v~nly~~ila~~n~~~~~k 1283 (1692)
T KOG1020|consen 1208 PSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS---LFTSREVLNLYDEILADDNSDIKSK 1283 (1692)
T ss_pred ccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch---hhhhHHHHHHHHHHHhhhcccHHHH
Confidence 0 011234456777777777888 899999999999999975444 2233334444444444442222 2
Q ss_pred HHHHHHHHHhhcc---------------CCHHHHHHHHH-------cC--------ChHHHHhhccCCCHHHHHHHHHHH
Q 039940 337 KEAAWAISNATKA---------------GTQEQIKYLVR-------EG--------CIKPLCDLLLCADPEIVTVCLKGL 386 (449)
Q Consensus 337 ~~a~~aL~~l~~~---------------~~~~~~~~l~~-------~~--------~~~~L~~ll~~~~~~~~~~~~~~l 386 (449)
..+...+.-.... ...+..+.+.. .| +++.++...-+.|..++..|++++
T Consensus 1284 i~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl 1363 (1692)
T KOG1020|consen 1284 IQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVL 1363 (1692)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 2333222222211 01112222221 11 233444444567888899999999
Q ss_pred HHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940 387 ENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL 446 (449)
Q Consensus 387 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~ 446 (449)
.-+++.+--.. ...+..|-.|..++.+.+++.|..++...+.
T Consensus 1364 ~liL~QGLVhP------------------~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1364 KLILNQGLVHP------------------VHCVPTLIALETDPSQAIRHVADELLKEIDE 1405 (1692)
T ss_pred HHHHHccCCCc------------------cchhhhheeecCChHHHHHHHHHHHHHHHHH
Confidence 88887653221 1125667777778888888888888876653
No 199
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.32 E-value=0.89 Score=42.02 Aligned_cols=191 Identities=18% Similarity=0.264 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHH---HhhcCC--CCCChhhhhchHHHHHHhh
Q 039940 127 QAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLS---NLCKGK--PQPPFDQVRPVLPALAQLI 201 (449)
Q Consensus 127 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~---~l~~~~--~~~~~~~~~~~l~~l~~ll 201 (449)
.|+.+|-.+....+..-..+.+.+++..+++.+.. + .-.++. +...+. +..... .... ...+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~-E-------v~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~i 69 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQY-E-------VDFALEENKNEEAGSGIPPEYKE---SSVD--GYSI 69 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHH-H-------HHHHHhcccccCCCCCCCCCccc---cccc--cccc
Confidence 46667777766666666667788999999988832 1 111111 111111 100000 0000 0000
Q ss_pred cCCCHHHHHHHHHHHHHccc---CChhHHHHHHH-hCcHHHHHHhhCCCC---CcchhhHHHHHHHhhcCChhhHHHHHh
Q 039940 202 HLDDEEVLRNVCWTLSNLSD---GTNDKIQAVIE-AGVCGPLVELLGHPS---PSVLIPALRTVGNIVTGDDFQTQCVIN 274 (449)
Q Consensus 202 ~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~-~~~~~~L~~ll~~~~---~~v~~~a~~~l~~l~~~~~~~~~~~~~ 274 (449)
......+.+..+..+..+.. +.....+.+++ ..+...|..++++.. +.+-..|+.++..+....+.....+.+
T Consensus 70 ~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e 149 (379)
T PF06025_consen 70 SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQE 149 (379)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 01112334444555555544 33344555666 566777777887753 568888999999999988888888899
Q ss_pred cCCHHHHHHHhc-cC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC
Q 039940 275 HGAVPYLLALLI-NN--HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA 331 (449)
Q Consensus 275 ~~~l~~L~~ll~-~~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~ 331 (449)
.|+.+.+++.+. .. .+.++....-.+++.+|- +....+.+.+.+.++.+++++.+.
T Consensus 150 ~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 150 AGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred cCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence 999999999988 33 145566666677777766 457777888889999888887653
No 200
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.28 E-value=0.006 Score=33.16 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=26.1
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
++|.+++++.+++++||..|+++|+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999999764
No 201
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.28 E-value=0.35 Score=46.84 Aligned_cols=193 Identities=12% Similarity=0.142 Sum_probs=137.0
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhh
Q 039940 189 QVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 268 (449)
Q Consensus 189 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 268 (449)
....++|.+++++...|..+|...+.-+-.....-. +..++..+++.+..-+.+.++.+|+..+.++..++..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~- 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK- 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch-
Confidence 456899999999999999999888877766654433 3356778899999999999999999999999888754221
Q ss_pred HHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCC-ChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940 269 TQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAG-LIVPLVNLLQDAEFDIKKEAAWAISNAT 347 (449)
Q Consensus 269 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~-~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 347 (449)
..+....+..+..+-.+. +..+|....-+++.++...... ...+ ....+.+.+.+.-..-|..+.+++....
T Consensus 403 --~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 403 --RNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred --hhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 133334555555555544 7889999988999887643221 1233 3445555567776777888888877665
Q ss_pred ccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940 348 KAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 396 (449)
..-+... +...+++.+.-+.-+.+..++..+..++..+....++.
T Consensus 476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 5322111 23447888888888888899999999998888776665
No 202
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.28 E-value=0.094 Score=44.81 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHh
Q 039940 37 SMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKL 116 (449)
Q Consensus 37 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 116 (449)
.....|++.|.-++--. .+....+-....+..++++|.....+.++..++.+|..+.-+++.+.+.+-+.+|+..++.+
T Consensus 106 ~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 34556778888776543 66677777889999999999665558999999999999999999999999999999999999
Q ss_pred hCC--CChHHHHHHHHHHHHHhcC
Q 039940 117 LAS--PSDDVREQAVWALGNIVAH 138 (449)
Q Consensus 117 l~~--~~~~~~~~a~~~L~~l~~~ 138 (449)
+++ .+.+++-.++..|.-....
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHcc
Confidence 986 4588888888888776543
No 203
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.19 E-value=0.75 Score=43.69 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=78.0
Q ss_pred hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 039940 187 FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD 266 (449)
Q Consensus 187 ~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 266 (449)
...+.+.+..+++.+.++|..++..++..++.+...-.+.-+ .+-.+++..|..-+-+..+.+|..|+.+|+.+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe-~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE-VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 455578888888888899999999999999988865444333 3444788888888888999999999999988853322
Q ss_pred hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHH
Q 039940 267 FQTQCVINHGAVPYLLALLINNHKKSIKKESCW 299 (449)
Q Consensus 267 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~ 299 (449)
... ..+...|..+++..++.+||+.|..
T Consensus 165 nee-----n~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 165 NEE-----NRIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred ChH-----HHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 111 1234466777776658889987744
No 204
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.17 E-value=0.0093 Score=32.41 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=25.8
Q ss_pred CHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 039940 277 AVPYLLALLINNHKKSIKKESCWTVSNITAG 307 (449)
Q Consensus 277 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~ 307 (449)
++|.+.++++++ +++||..|+++|+.++.+
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 368899999999 999999999999999753
No 205
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.15 E-value=0.22 Score=50.24 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=132.1
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhh
Q 039940 111 PIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQV 190 (449)
Q Consensus 111 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 190 (449)
+.+..-+.+.++.-|..++..+........ .....-..+.+-.+++....+.+..+...++.+|..++...........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 344445556788888888888888776554 1111112334555666666788888999999999999988755555556
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh-hhH
Q 039940 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD-FQT 269 (449)
Q Consensus 191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-~~~ 269 (449)
....|.++..+......++..+..++-.++.... -....+.+...+++.++.++......+.......+ ...
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 7888889988888888888777777766554222 11456888899999999999998877777665544 222
Q ss_pred HHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 270 QCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 270 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
..-.-.+.++.++....+. +..||..|..+++-+..
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 2222346788888888888 99999999988888765
No 206
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.09 E-value=0.41 Score=46.38 Aligned_cols=190 Identities=12% Similarity=0.162 Sum_probs=133.3
Q ss_pred HhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCC
Q 039940 105 IDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQ 184 (449)
Q Consensus 105 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~ 184 (449)
++.+++|.+++++...+..+|-..+.-+-+.... ..+.+.+..+++.+...+ .++++.+++..+.++..++..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence 5668999999999999999997666655555433 334455677888888888 889999999999998888765422
Q ss_pred CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC
Q 039940 185 PPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG 264 (449)
Q Consensus 185 ~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 264 (449)
. ......+..+..+-.+++..++.+..-|++.++....... .+.-....+.+-++++-..-|..+...+......
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 2 2224556666665555678899999889988886643221 2222233455567777777888888888666544
Q ss_pred ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 039940 265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG 307 (449)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~ 307 (449)
.+. .-+...+++.+..+..++ +..+|..|..++..+...
T Consensus 478 ~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 478 FDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred cch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHhh
Confidence 332 223456888888888888 888999988888777553
No 207
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.09 E-value=0.013 Score=46.49 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=96.7
Q ss_pred HHHHHHHHcc-cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHH
Q 039940 152 LIPLLAQLNE-HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAV 230 (449)
Q Consensus 152 i~~l~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 230 (449)
+..++..+.. ...++++..++-++..+-. .........+-.++...+...+.+-...++.++..+-...++....+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 4455666643 4567788888888877731 11112223444555555655555677778888888888887765554
Q ss_pred H-HhCcHHHHHHhhC--CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchh-HHHHHHHHHHH
Q 039940 231 I-EAGVCGPLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKS-IKKESCWTVSN 303 (449)
Q Consensus 231 ~-~~~~~~~L~~ll~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-v~~~a~~~l~n 303 (449)
+ ..|+.+.+..++. ..+..+...++.+|..-|. ++.....+...+++.|-.+++.+.+.. +|..|+-+|..
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 4 5588999999998 6677788888888866554 334444555678999999996553565 78888777653
No 208
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=96.08 E-value=0.59 Score=40.71 Aligned_cols=202 Identities=12% Similarity=0.074 Sum_probs=137.0
Q ss_pred hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCC---hhhh---hchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 039940 145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP---FDQV---RPVLPALAQLIHLDDEEVLRNVCWTLSN 218 (449)
Q Consensus 145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~---~~~l~~l~~ll~~~~~~~~~~~~~~l~~ 218 (449)
.+...|.+..++..+ ...+-+.+..++.+..++-+...... .... ..++..++.--.. .+++.-.+ +.+..
T Consensus 74 ef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~c-g~mlr 150 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTC-GNMLR 150 (342)
T ss_pred HHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHH-HHHHH
Confidence 345678888888888 67778888899999998887762221 1121 3333444433111 13333222 22222
Q ss_pred cccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCC----HHHHHHHhccCCchhHH
Q 039940 219 LSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGA----VPYLLALLINNHKKSIK 294 (449)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----l~~L~~ll~~~~~~~v~ 294 (449)
=|...+...+.+..+.-+......++.+.-++...|..++..+..........++..+. .+.--.++.++ +.-++
T Consensus 151 Ecirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvtk 229 (342)
T KOG1566|consen 151 ECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVTK 229 (342)
T ss_pred HHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceehH
Confidence 23334445666777788888888999998899999999998887665665555654333 33466677888 99999
Q ss_pred HHHHHHHHHHhc--CCHH-HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940 295 KESCWTVSNITA--GNRK-QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 295 ~~a~~~l~nl~~--~~~~-~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 350 (449)
..+...++.+.. ++.. ..+++.+..-+..++.+|.+++..+|-+|-....-.+...
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 999999999985 3333 2333334567889999999999999999999888888764
No 209
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.08 E-value=0.38 Score=45.06 Aligned_cols=265 Identities=13% Similarity=0.119 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhh
Q 039940 38 MQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL 117 (449)
Q Consensus 38 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l 117 (449)
-.......|..+.........+..++...+..|+.++++++ ++-|.....+|.++.......|..+.. .+...+..++
T Consensus 106 HL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi 183 (409)
T PF01603_consen 106 HLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFI 183 (409)
T ss_dssp HHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHh
Confidence 33445556666655432222344566677889999999999 899999999999988755555655543 3456777776
Q ss_pred CC-CChHHHHHHHHHHHHHhcCCC-chhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 039940 118 AS-PSDDVREQAVWALGNIVAHSP-GCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLP 195 (449)
Q Consensus 118 ~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~ 195 (449)
.. ....-...++++++.+..+-. ..++.. ..-....++.+.....-...-.....++..++..+|. ....++.
T Consensus 184 ~e~~~~~gI~elLeil~sii~gf~~plk~eh-~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~ 258 (409)
T PF01603_consen 184 YETERHNGIAELLEILGSIINGFAVPLKEEH-KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIK 258 (409)
T ss_dssp HTTS--STHHHHHHHHHHHHTT--SS--HHH-HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHH
T ss_pred cCcccccCHHHHHHHHHHHHhccCCCCcHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHH
Confidence 53 445555667888888876522 111111 0001112222332222334455566666666655432 1123333
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHcccCCh-hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH-
Q 039940 196 ALAQLIHLDDEEVLRNVCWTLSNLSDGTN-DKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI- 273 (449)
Q Consensus 196 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~- 273 (449)
.+++.=-..++.-...-+.-+..+...-+ .....+. ..+...+..++.+++..|.+.|+..+.| +.....+.
T Consensus 259 ~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li~~ 332 (409)
T PF01603_consen 259 GLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIM-VPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLISQ 332 (409)
T ss_dssp HHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHH-HHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHHHC
T ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHHHh
Confidence 33333333444444444555555554332 2223222 3577888888999999999988876632 22222221
Q ss_pred -hcCCHHHHHHHhccC---C-chhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940 274 -NHGAVPYLLALLINN---H-KKSIKKESCWTVSNITAGNRKQIQAV 315 (449)
Q Consensus 274 -~~~~l~~L~~ll~~~---~-~~~v~~~a~~~l~nl~~~~~~~~~~l 315 (449)
...+++.+..-+... + +..++..|..++..+..-++.....+
T Consensus 333 ~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 333 NSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp THHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 123566666666431 1 67899999999999988777755443
No 210
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=96.07 E-value=0.89 Score=39.69 Aligned_cols=225 Identities=11% Similarity=0.128 Sum_probs=149.1
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChh----HHHHHH-HhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcC
Q 039940 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND----KIQAVI-EAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTG 264 (449)
Q Consensus 191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~-~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~ 264 (449)
.+.++.++..+..-+-+.+..++.+..++.+...+ ..+.+. +...+..|+.- .. .+++...+-..+....++
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrEcirh 155 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRECIRH 155 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHHHHhh
Confidence 47777888888888888888888888887654321 112111 11333333333 12 234443333344444443
Q ss_pred ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCC---C-hHHHHHHhhcCchhHHHHHH
Q 039940 265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAG---L-IVPLVNLLQDAEFDIKKEAA 340 (449)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~---~-~~~L~~ll~~~~~~v~~~a~ 340 (449)
+...+.+....-+......+..+ .-++...|..+...+...-...+.+++..+ . .+.--.++.+++.-++..+.
T Consensus 156 -e~LakiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~ 233 (342)
T KOG1566|consen 156 -EFLAKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL 233 (342)
T ss_pred -HHHHHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence 66667777888899999999988 888999999998888763344445555433 2 33355677888999999999
Q ss_pred HHHHHhhccC--CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcc-
Q 039940 341 WAISNATKAG--TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAE- 417 (449)
Q Consensus 341 ~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 417 (449)
..++.+...- .....+++.+...++.++.+|+++...++..|......+.....+. .+....+.+..
T Consensus 234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~----------q~V~~IL~~Nr~ 303 (342)
T KOG1566|consen 234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKP----------QPVRDILVRNRP 303 (342)
T ss_pred HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCC----------chHHHHHHhCcH
Confidence 9999987752 2334556555567999999999999999999999998877766543 24566665553
Q ss_pred -hHHHHHHHhcCC
Q 039940 418 -GFKKIEDLKSHG 429 (449)
Q Consensus 418 -~~~~l~~l~~~~ 429 (449)
.++.+..+..+.
T Consensus 304 KLl~~l~~f~~d~ 316 (342)
T KOG1566|consen 304 KLLELLHDFHTDR 316 (342)
T ss_pred HHHHHHHHhCCCC
Confidence 455555554444
No 211
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=1.7 Score=42.92 Aligned_cols=328 Identities=14% Similarity=0.085 Sum_probs=184.1
Q ss_pred hhHhhhcHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCC-CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 039940 17 LQTKLEILPAMVAGVWSD-DNSMQLEAATQFRRLLSIER-SLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIA 94 (449)
Q Consensus 17 ~~~~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 94 (449)
.+.+.-....++++++.+ |..+++.+++.+.....+-. .+..-.-.-......+.++++.-..-+.+...+..++.+.
T Consensus 521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI 600 (978)
T KOG1993|consen 521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLI 600 (978)
T ss_pred HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 344455667778888876 78888999999988765421 1111111224556666677765443466777777777776
Q ss_pred CCChhhhHHHHhCCChHHHHHhhC--CCChHHHHHHHHHHHHHhcC----CCchhhhHhhcCCHHHHHHHHcccccH---
Q 039940 95 SGTSVNTKVLIDHGAVPIFVKLLA--SPSDDVREQAVWALGNIVAH----SPGCRNLVLHEEALIPLLAQLNEHARL--- 165 (449)
Q Consensus 95 ~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~~i~~l~~~l~~~~~~--- 165 (449)
....+...... ..++..+-.+-+ ++.+-+|.+.+.+|.|+... ++.+.. ++-+++.+-.+-.++
T Consensus 601 ~r~~e~I~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv 673 (978)
T KOG1993|consen 601 ERVSEHIAPYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHV 673 (978)
T ss_pred HHHHHhhhHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCcee
Confidence 53333332111 111222222221 25567888888899998732 222222 222444444222222
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHH-cccCChhHHHHHHHhCcHHHHHHhhC
Q 039940 166 SMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSN-LSDGTNDKIQAVIEAGVCGPLVELLG 244 (449)
Q Consensus 166 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~L~~ll~ 244 (449)
...+.+.........+.+.- ....-+.+|.+...+......++ .++..+.. +.-.++.... ....|+.+.+..++.
T Consensus 674 ~L~EDgmeLW~~~L~n~~~l-~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~ 750 (978)
T KOG1993|consen 674 YLLEDGMELWLTTLMNSQKL-TPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLD 750 (978)
T ss_pred ehhhhHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHH
Confidence 24455554444444443222 22335677777777765443332 23333322 2222222222 333488888888888
Q ss_pred CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCChH
Q 039940 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALL-INNHKKSIKKESCWTVSNITAGNRKQIQAVID-AGLIV 322 (449)
Q Consensus 245 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~ 322 (449)
+-..+-....+.++..+...++ ........++++.+..-+ ...+.|.+...-..+++.+.-.+++....+++ ..-.+
T Consensus 751 dvr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d 829 (978)
T KOG1993|consen 751 DVRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYD 829 (978)
T ss_pred HhhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHH
Confidence 7666667777888777766544 444455677888776654 33336778888888888888778887766664 22223
Q ss_pred HHH--------HHhhc-CchhHHHHHHHHHHHhhccCCHHHH
Q 039940 323 PLV--------NLLQD-AEFDIKKEAAWAISNATKAGTQEQI 355 (449)
Q Consensus 323 ~L~--------~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~ 355 (449)
.++ .+..+ .+++-|+--+-+++.+...+++...
T Consensus 830 ~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~il 871 (978)
T KOG1993|consen 830 ILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDIL 871 (978)
T ss_pred HHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHH
Confidence 333 22221 2788888888899999887655443
No 212
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.03 E-value=1.6 Score=48.36 Aligned_cols=272 Identities=8% Similarity=0.060 Sum_probs=148.1
Q ss_pred CCCChHHHHHHHHHHHHHhcCC---CchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchH
Q 039940 118 ASPSDDVREQAVWALGNIVAHS---PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVL 194 (449)
Q Consensus 118 ~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l 194 (449)
.+++..++..|+..|..++..- .+....-.+...+.++...+.+..+.++++.++.|+.++...........-..++
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence 3456778888888888887422 1211122234567788888877788999999999999887664211111112333
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHcccCChhHH-----HHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCC---
Q 039940 195 PALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKI-----QAVIEAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTGD--- 265 (449)
Q Consensus 195 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~--- 265 (449)
..+.......++.+...+..++..+....-... ..+ ..++..+..+.... +.++-..|+..|++++..-
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~ 1304 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEG 1304 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhc
Confidence 333333334567777777777776653311100 001 13444455554433 3566667777776552110
Q ss_pred h------------------------hhH-----HHHHhcCCHH---HHHHHhccCCchhHHHHHHHHHHHHhc-C----C
Q 039940 266 D------------------------FQT-----QCVINHGAVP---YLLALLINNHKKSIKKESCWTVSNITA-G----N 308 (449)
Q Consensus 266 ~------------------------~~~-----~~~~~~~~l~---~L~~ll~~~~~~~v~~~a~~~l~nl~~-~----~ 308 (449)
+ ... ........++ .|..+..+. +.+||..|..+|-.+.. + +
T Consensus 1305 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs 1383 (1780)
T PLN03076 1305 DLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFS 1383 (1780)
T ss_pred cccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCC
Confidence 0 000 0000012233 334445666 89999999999888774 1 3
Q ss_pred HHHHHHHHHCCChHHHHHHhhcC-----------------------chhHHHHHHHHHHHhhccCCHHHHHHHHH--cCC
Q 039940 309 RKQIQAVIDAGLIVPLVNLLQDA-----------------------EFDIKKEAAWAISNATKAGTQEQIKYLVR--EGC 363 (449)
Q Consensus 309 ~~~~~~l~~~~~~~~L~~ll~~~-----------------------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--~~~ 363 (449)
++....+.+ +++.++++.+... +..+...+..+|..++.-- ..+...+-. .++
T Consensus 1384 ~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf-t~fFd~L~~~L~~~ 1461 (1780)
T PLN03076 1384 LPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLF-VKFYPTVNPLLKKV 1461 (1780)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 444444444 5566665555321 0012233344444444320 112222211 345
Q ss_pred hHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940 364 IKPLCDLLLCADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 364 ~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
+..|..+...++..+...+..+|.+++....
T Consensus 1462 l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1462 LMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 6666777778888899999999999986553
No 213
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.45 Score=46.10 Aligned_cols=188 Identities=14% Similarity=0.063 Sum_probs=123.8
Q ss_pred HHHHHHhhCCCCCcchhhHHHHHHHhhcC--Ch---hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940 236 CGPLVELLGHPSPSVLIPALRTVGNIVTG--DD---FQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK 310 (449)
Q Consensus 236 ~~~L~~ll~~~~~~v~~~a~~~l~~l~~~--~~---~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 310 (449)
-+.+.+-|+-.+..||.+|+..+-++--- .+ +....+++ +-...+.++|+++ -+.+|..|...++.+...
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~--- 250 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDP-YPMVRSTAILGVCKITSK--- 250 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH---
Confidence 35566667788999999999998887432 11 12223332 3466789999999 999999998888877541
Q ss_pred HHHHHHHCCChHHHH----HHh-hcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHH
Q 039940 311 QIQAVIDAGLIVPLV----NLL-QDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKG 385 (449)
Q Consensus 311 ~~~~l~~~~~~~~L~----~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~ 385 (449)
...++-..++..++ +-+ .+...+||......|..++.. +..... .+. +++.+-..+++....+|.++.+.
T Consensus 251 -fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~-le~-~Lpal~~~l~D~se~VRvA~vd~ 325 (1005)
T KOG1949|consen 251 -FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPL-LEQ-LLPALRYSLHDNSEKVRVAFVDM 325 (1005)
T ss_pred -HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhH-HHH-HHHhcchhhhccchhHHHHHHHH
Confidence 11222222232232 222 233568998888888888874 333222 222 56677788888999999999988
Q ss_pred HHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940 386 LENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 386 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
|..+-... +.+.+.-+..-..|..|..++.+--+..+.-++..||+..
T Consensus 326 ll~ik~vr---------------a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~ 373 (1005)
T KOG1949|consen 326 LLKIKAVR---------------AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVN 373 (1005)
T ss_pred HHHHHhhh---------------hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Confidence 87665432 2444444445566777777777777888888888888753
No 214
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.92 E-value=0.075 Score=35.52 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=52.4
Q ss_pred hhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 039940 251 LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAG 319 (449)
Q Consensus 251 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~ 319 (449)
.+.++|+++++++. +.....+.+.++++.++++..+.+...+|-.+.++|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 46799999999885 55556566789999999999877578899999999998865 556665555544
No 215
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.90 E-value=0.092 Score=35.10 Aligned_cols=66 Identities=17% Similarity=0.338 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHcC
Q 039940 294 KKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVREG 362 (449)
Q Consensus 294 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 362 (449)
.+.|.|+++++++ ++..+..+.+.++++.++++.... ...+|-.|.++|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 5789999999976 456676777789999999998755 68899999999999887 567777666554
No 216
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.87 E-value=1.4 Score=40.17 Aligned_cols=209 Identities=15% Similarity=0.117 Sum_probs=133.3
Q ss_pred HHHHHHhhCCCCCcchhhHHHHHHHhhc-CChhhHHHHHhc-C-CHHHHHHHhccCC----c--------hhHHHHHHHH
Q 039940 236 CGPLVELLGHPSPSVLIPALRTVGNIVT-GDDFQTQCVINH-G-AVPYLLALLINNH----K--------KSIKKESCWT 300 (449)
Q Consensus 236 ~~~L~~ll~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~-~-~l~~L~~ll~~~~----~--------~~v~~~a~~~ 300 (449)
+..+...|......+...++..|..++. .+......+... + -.+.+-+++.... + +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888988888888899999999998 555666666532 1 2234444442210 1 2788888766
Q ss_pred HHHHhc-CCHHHHHHHHH-CCChHHHHHHhhcCchhHHHHHHHHHHHhhccC---CHHHHHHHHHcCChHHHHhhccCCC
Q 039940 301 VSNITA-GNRKQIQAVID-AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG---TQEQIKYLVREGCIKPLCDLLLCAD 375 (449)
Q Consensus 301 l~nl~~-~~~~~~~~l~~-~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~---~~~~~~~l~~~~~~~~L~~ll~~~~ 375 (449)
+..+.. +++..+..+++ .+.+..+.+-+..+++++....+.++..-+... .+...-.+.++..+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 655554 67777777774 677888888888889999999999998544432 1334445566678999999888877
Q ss_pred H----HHHHHHHHHHHHHHHhhhhhhccCCC-CCc----------ccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHH
Q 039940 376 P----EIVTVCLKGLENILKVGEAKKNRGST-IGD----------VNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTI 440 (449)
Q Consensus 376 ~----~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~ 440 (449)
+ .+...+-+.|..++......-.-.+. .+. .+.-...+...-....|..+...+++.-++.+.+|
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~q~~Lvl~I 297 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPWEDDRQQELVLKI 297 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCCccHHHHHHHHHH
Confidence 7 88889999998888544321110000 000 00000000011124455666667777778888887
Q ss_pred HHHh
Q 039940 441 LETY 444 (449)
Q Consensus 441 i~~~ 444 (449)
++.+
T Consensus 298 l~~~ 301 (330)
T PF11707_consen 298 LKAC 301 (330)
T ss_pred HHHC
Confidence 7754
No 217
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.76 E-value=0.87 Score=41.94 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=61.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC-CCh-HHHHHHHHHHHHHhcCCCchhh
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS-PSD-DVREQAVWALGNIVAHSPGCRN 144 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~-~~~~~a~~~L~~l~~~~~~~~~ 144 (449)
+..+++-+.+.....++..++--|+.-+. +++.+..+...|....+.+.+.. ++. ...-.++.++.-++.+.+ ...
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 56677777755557889999888888887 79999999999999999999954 333 333333444444444443 333
Q ss_pred hHhhcCCHHHHHHHHc
Q 039940 145 LVLHEEALIPLLAQLN 160 (449)
Q Consensus 145 ~~~~~~~i~~l~~~l~ 160 (449)
.+...+....++.++.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 3334444545566663
No 218
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.75 E-value=0.33 Score=47.16 Aligned_cols=214 Identities=14% Similarity=0.102 Sum_probs=130.2
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh
Q 039940 164 RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL 243 (449)
Q Consensus 164 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll 243 (449)
|+.-+..-...|..+..+.|. ......++|.++..+.+ ....-..+-.+..++...+. ..+...+++.|...+
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~--rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s~---~~~~~~~~p~l~pi~ 358 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPA--RVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLSQ---NEFGPKMLPALKPIY 358 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCH--HHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccch---hhhhhhhhHHHHHHh
Confidence 444444555556666555432 23335778888777743 22233333333344433332 233446778888888
Q ss_pred CCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH
Q 039940 244 GHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVP 323 (449)
Q Consensus 244 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~ 323 (449)
+..++ ....+.++-++-.--......-+...+++.|..-+++. +..++..+...+...+..-+ ...++.-++|.
T Consensus 359 ~~~~~--~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~ 432 (700)
T KOG2137|consen 359 SASDP--KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPR 432 (700)
T ss_pred ccCCc--ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHH
Confidence 75332 22333334343111111112234456888999999998 99999999999998876322 13455568888
Q ss_pred HHHHhhc-CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 324 LVNLLQD-AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 324 L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
+..+... .+..++.+++.|+..++...+. ....+ .+..+....+..|+.+...++.+..+++-....
T Consensus 433 l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~---~~v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 433 LKNLAFKTTNLYVKVNVLPCLAGLIQRLDK---AAVLD--ELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred hhcchhcccchHHHHHHHHHHHHHHHHHHH---HHhHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 8887543 4889999999999999853221 11122 466677777888999999999998888866544
No 219
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.19 Score=47.30 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=97.9
Q ss_pred HHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHh-hcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhC
Q 039940 156 LAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQL-IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAG 234 (449)
Q Consensus 156 ~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~l-l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 234 (449)
++-+..+.++.++...+.++..-..+-. ..+++..+++. ....|.++++.+.-+|+.+|-.+.+
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTg------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTG------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCC------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3333355566666665555443222210 13455566665 4566899999999999999866543
Q ss_pred cHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHH
Q 039940 235 VCGPLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQI 312 (449)
Q Consensus 235 ~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~ 312 (449)
.+...+.+|. +.++.+|...+.+|+-.|.+..... .+..|-.++.+. ..-||..|+-+++.+.. ++++..
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~-~dfVRQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDT-NDFVRQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCc-HHHHHHHHHHHHHHHHhhcCcccC
Confidence 3444555554 4678899999999999988765433 345566677777 88899999999998875 444322
Q ss_pred HHHHHCCChHHHHHHhhcCc
Q 039940 313 QAVIDAGLIVPLVNLLQDAE 332 (449)
Q Consensus 313 ~~l~~~~~~~~L~~ll~~~~ 332 (449)
..+ .++.+.+.+++.+.+
T Consensus 658 p~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 658 PNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred hhH--HHHHHHHHHHHhhhh
Confidence 222 246667777776653
No 220
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=2.4 Score=41.69 Aligned_cols=300 Identities=12% Similarity=0.041 Sum_probs=165.8
Q ss_pred HHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC--------CChHHHHHHHHHHHHHhc--CCCchhhhHhhcCCHHH
Q 039940 85 EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS--------PSDDVREQAVWALGNIVA--HSPGCRNLVLHEEALIP 154 (449)
Q Consensus 85 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~ 154 (449)
+|+.++..+....+ .-.-.|+++.+...+.. .+..-.+.|++.++++.. ..+....-+++.-.++.
T Consensus 389 aal~fl~~~~sKrk----e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h 464 (970)
T COG5656 389 AALFFLIISKSKRK----EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH 464 (970)
T ss_pred HHHHHHHHHhcccc----hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 45555555544222 22234889999999832 234556778888888764 22222223334444555
Q ss_pred HHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHh-
Q 039940 155 LLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA- 233 (449)
Q Consensus 155 l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~- 233 (449)
++..+ ++...-++..+|..++.+..+- ........+......++++++-.++..+.-++..+..+.. ....+..
T Consensus 465 v~P~f-~s~ygfL~Srace~is~~eeDf--kd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sah 539 (970)
T COG5656 465 VIPAF-RSNYGFLKSRACEFISTIEEDF--KDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAH 539 (970)
T ss_pred hhHhh-cCcccchHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhh
Confidence 55555 6666778889999999995443 3334445677778888888888899888888888776652 2223333
Q ss_pred --CcHHHHHHhhCCCCCcchhhHHHHH-HHhhcCChhhHHHHHh---cCCHHHHHHHhccCCc-----hhHHHHHHHHHH
Q 039940 234 --GVCGPLVELLGHPSPSVLIPALRTV-GNIVTGDDFQTQCVIN---HGAVPYLLALLINNHK-----KSIKKESCWTVS 302 (449)
Q Consensus 234 --~~~~~L~~ll~~~~~~v~~~a~~~l-~~l~~~~~~~~~~~~~---~~~l~~L~~ll~~~~~-----~~v~~~a~~~l~ 302 (449)
+.++.|+.+-+.-+-++...++..+ +..+..-......+.. ...++....++..+.+ .+-+..|.+.|.
T Consensus 540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~ 619 (970)
T COG5656 540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR 619 (970)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 3344555554444444444444432 2222211111111111 1223333444433311 122334555555
Q ss_pred HHhc------CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCH
Q 039940 303 NITA------GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADP 376 (449)
Q Consensus 303 nl~~------~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~ 376 (449)
.+.. ..+...+.+ .....|.+--.+.+.-.++-.+|+..+-+..-. .++-...+ -|+.+.+.+++.+...
T Consensus 620 T~~smiLSlen~p~vLk~l-e~slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~pim--wgi~Ell~~~l~~~~t 695 (970)
T COG5656 620 TIESMILSLENRPLVLKYL-EVSLYPVISFILKNEISDFYQEALDILDGYTFM-SKEIEPIM--WGIFELLLNLLIDEIT 695 (970)
T ss_pred HHHHHHHhcccchHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhhhhh--hHHHHHHHhcccccch
Confidence 4432 233333332 234555555566666677888888777766543 22222211 2467777777777664
Q ss_pred -HHHHHHHHHHHHHHHhhhhhh
Q 039940 377 -EIVTVCLKGLENILKVGEAKK 397 (449)
Q Consensus 377 -~~~~~~~~~l~~l~~~~~~~~ 397 (449)
.-.+.+..++.|++.++.+.-
T Consensus 696 ~~y~ee~~~al~nfityG~~ef 717 (970)
T COG5656 696 AVYSEEVADALDNFITYGKTEF 717 (970)
T ss_pred hhhHHHHHHHHHHHHHhCcccc
Confidence 556778889999998886544
No 221
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.68 E-value=0.38 Score=46.48 Aligned_cols=182 Identities=15% Similarity=0.162 Sum_probs=119.8
Q ss_pred hHHHHHHhhcC----CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChh
Q 039940 193 VLPALAQLIHL----DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG-HPSPSVLIPALRTVGNIVTGDDF 267 (449)
Q Consensus 193 ~l~~l~~ll~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~ 267 (449)
+-|.+.....+ +|+.++..|.-+|..+---+.+. .. .-+|.++..+. +++|.+|..|+-.++.++.....
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~f----c~-ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEF----CS-EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHH----HH-HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 34455555444 57888888887777654322221 11 44788888887 78999999999999988765443
Q ss_pred hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940 268 QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNAT 347 (449)
Q Consensus 268 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 347 (449)
..+. .-..|..-|.+. +..||+.+..++.++.-.. .+--.|-++.+..+|.+++.++...|-..+..++
T Consensus 968 ~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 968 TADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 3332 234577777788 8999999999999987533 2223588899999999999999999999999998
Q ss_pred ccCCHHHHHHHHHcCChHHHHhhccC---CCHHHHHHHHHHHHHHHHhhhhhh
Q 039940 348 KAGTQEQIKYLVREGCIKPLCDLLLC---ADPEIVTVCLKGLENILKVGEAKK 397 (449)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~L~~ll~~---~~~~~~~~~~~~l~~l~~~~~~~~ 397 (449)
...+ .. -.|.++..-.+-++ ++.+ -...++.|..++......+
T Consensus 1037 ~KdN-t~-----yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~kerh~k 1082 (1128)
T COG5098 1037 KKDN-TM-----YNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKERHQK 1082 (1128)
T ss_pred hccc-ch-----hhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHHHHH
Confidence 7632 21 12333333222211 1222 4556667777776654433
No 222
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.52 E-value=1.5 Score=38.21 Aligned_cols=226 Identities=13% Similarity=0.107 Sum_probs=137.2
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccc-ccHHHHHHHHHHHHHhhcCCCCCChhh
Q 039940 111 PIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH-ARLSMLRIGTWTLSNLCKGKPQPPFDQ 189 (449)
Q Consensus 111 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~ 189 (449)
..|-..|.++++.+|..++..|+.+...-|.. .+...-+..++..+.+. .|......++..+..|.... ......
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~ 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence 34567788999999999999999988665431 12233344555544221 35555656677777777443 222222
Q ss_pred hhchHHHHHHhhc--CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcCCh
Q 039940 190 VRPVLPALAQLIH--LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPALRTVGNIVTGDD 266 (449)
Q Consensus 190 ~~~~l~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~ 266 (449)
...++..+..-.+ +--...|..+...+..+..+....... +..+++..++..+.. .||+-...+...+..+....+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 3344444443322 223667888888888887665443322 223677777777776 567777777777776655433
Q ss_pred hhHHHHHhcCCHHHHHHHhcc--------CC-ch--hHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhH
Q 039940 267 FQTQCVINHGAVPYLLALLIN--------NH-KK--SIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDI 335 (449)
Q Consensus 267 ~~~~~~~~~~~l~~L~~ll~~--------~~-~~--~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v 335 (449)
- ....+.+.+.+.. +. |+ -.+..-..+|.+....++.... -.+|.|++-|.++.+.+
T Consensus 157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSV 224 (262)
T ss_pred c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHH
Confidence 1 2344444444422 11 22 2455555666666665554322 36889999999999999
Q ss_pred HHHHHHHHHHhhccCCHH
Q 039940 336 KKEAAWAISNATKAGTQE 353 (449)
Q Consensus 336 ~~~a~~aL~~l~~~~~~~ 353 (449)
+..++.+|..++..-+.+
T Consensus 225 K~D~L~tL~~c~~~y~~~ 242 (262)
T PF14500_consen 225 KLDSLQTLKACIENYGAD 242 (262)
T ss_pred HHHHHHHHHHHHHHCCHH
Confidence 999999999888764443
No 223
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.49 E-value=0.62 Score=47.14 Aligned_cols=187 Identities=14% Similarity=0.110 Sum_probs=124.9
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHH
Q 039940 161 EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI-HLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPL 239 (449)
Q Consensus 161 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L 239 (449)
.+.+..-+..++..+.-..............+.+-.+.+.. .+.|..+...++.+|..++........... .++.+.+
T Consensus 263 ~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~v~p~l 341 (815)
T KOG1820|consen 263 LSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KNVFPSL 341 (815)
T ss_pred hccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-HhhcchH
Confidence 34556667777777777776654112222233444444433 355788888899999988876554433333 3678899
Q ss_pred HHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHC
Q 039940 240 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNR-KQIQAVIDA 318 (449)
Q Consensus 240 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~ 318 (449)
++.+......++..+..++-.++....- ....+.+...++++ ++.++.+....+........ .....-.-.
T Consensus 342 ld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~~t~~ 413 (815)
T KOG1820|consen 342 LDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGPKTVEKETVK 413 (815)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcchhhHH
Confidence 9999888888888887777665543221 23677888899999 99999998777777765322 111112223
Q ss_pred CChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHH
Q 039940 319 GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIK 356 (449)
Q Consensus 319 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 356 (449)
++++.++....+.+.+||..|..++.-+....+.+...
T Consensus 414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 414 TLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred HHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 67888888888889999999999999887754444333
No 224
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.089 Score=45.50 Aligned_cols=146 Identities=12% Similarity=0.179 Sum_probs=97.5
Q ss_pred HHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940 236 CGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV 315 (449)
Q Consensus 236 ~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 315 (449)
+...+..|.+.+|.....++..+..++...++.....+ ..++-.+++-+++. ...|-+.||.+++.+...-...+...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778889999999999999999877554433333 23566677777888 88899999999999986322322222
Q ss_pred HHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940 316 IDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 316 ~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 392 (449)
.+ +.+..|..--..++.-+++.|-.+|..++.+..+.. ++..|...+...++.++..+..++.+....
T Consensus 168 ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 168 LD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred HH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhcccccccee
Confidence 11 222222222222356789999999999998755433 466677778888888887777666555433
No 225
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.44 E-value=0.23 Score=39.56 Aligned_cols=147 Identities=13% Similarity=0.088 Sum_probs=87.6
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940 65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN 144 (449)
Q Consensus 65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 144 (449)
..++.|+.+++.+....++.+++++++.+..-+|...+.+.... +.-. -...+........ .+. ...+. .+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l---~~~-~~~~~-~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISL---PMM-GISPS-SE 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHH---hhc-cCCCc-hH
Confidence 34677888888876689999999999999997665444322211 1000 0111122222111 111 11111 12
Q ss_pred hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940 145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLS 220 (449)
Q Consensus 145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 220 (449)
...-..++..++..+.+..-..-...++.++.++..............++|.++..+++.+...++..++-|+.+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2223346677888885444444455677777777766555557777899999999998777777777776666543
No 226
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.32 E-value=3.6 Score=41.54 Aligned_cols=192 Identities=16% Similarity=0.103 Sum_probs=111.6
Q ss_pred HHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHH--HHHHhhcCCCH-H
Q 039940 131 ALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLP--ALAQLIHLDDE-E 207 (449)
Q Consensus 131 ~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~--~l~~ll~~~~~-~ 207 (449)
+++++....|.....+.+.+++..+...+..-...++...++..+.+++...+..........+. .+..++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 45577777777777888999999999999766778889999999999988764333333222222 33333433333 5
Q ss_pred HHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC-ChhhHHHHHhcCCHHH-HHHHh
Q 039940 208 VLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG-DDFQTQCVINHGAVPY-LLALL 285 (449)
Q Consensus 208 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~-L~~ll 285 (449)
.-..++..++.+....++... ..-+..+...+...... ......... ...+.. +..++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~-------------------~~~r~~~~~~l~e~i~~~~~~~~~~~~-~~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTE-------------------CVFRNSVNELLVEAISRWLTSEIRVIN-DRSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCcc-------------------ccchHHHHHHHHHHhhccCccceeehh-hhhcchhHHHHh
Confidence 555666666665544332111 11122222222222111 111111111 222333 55566
Q ss_pred ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-chhHHHHHHHH
Q 039940 286 INNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKKEAAWA 342 (449)
Q Consensus 286 ~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~a~~a 342 (449)
..+..+..+--|.|++.+++..+++......+.|+++.+.+.-... ..+++..+...
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLV 691 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence 5554777888999999999998888777777888888887764332 34444444433
No 227
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.27 E-value=0.47 Score=36.63 Aligned_cols=76 Identities=11% Similarity=-0.035 Sum_probs=64.0
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhh
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~ 393 (449)
.+..+..-+.+.++.++..|+..|-.++.++...+...+...+++..|+.++.. .++.|+.+++..+.......
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455677778888999999999999999999888888888888899999999863 46789999999998887655
Q ss_pred hh
Q 039940 394 EA 395 (449)
Q Consensus 394 ~~ 395 (449)
.+
T Consensus 119 ~~ 120 (139)
T cd03567 119 PH 120 (139)
T ss_pred cc
Confidence 43
No 228
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.23 E-value=1.7 Score=37.20 Aligned_cols=202 Identities=18% Similarity=0.154 Sum_probs=117.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 146 (449)
++.|+.-+....+++.+...+..|..++.+...... -++..+..+.+.+....+.-+.+.+..+-..++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 445555344444489999999999999985412222 235666666777777776677777777765544321
Q ss_pred hhcCCHHHHHHHH---------cccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHH
Q 039940 147 LHEEALIPLLAQL---------NEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI-HLDDEEVLRNVCWTL 216 (449)
Q Consensus 147 ~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l 216 (449)
+.+..++... ..+...+.......++..+|...|. .-...++.+..++ ++.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3344444431 1122334455556788888888766 3456778888888 778888999999999
Q ss_pred HHcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHHhccC
Q 039940 217 SNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTGD-DFQTQCVINHGAVPYLLALLINN 288 (449)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~ 288 (449)
..++....-... .....+..-+..+ .+.+....+..+..+..+. +.......+..++..+.++..+.
T Consensus 147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 999943221111 2233444444332 3444444444444433321 11111223455677777777666
No 229
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.18 E-value=1.5 Score=40.40 Aligned_cols=275 Identities=17% Similarity=0.154 Sum_probs=139.8
Q ss_pred hHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC-CCCCh
Q 039940 110 VPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPF 187 (449)
Q Consensus 110 i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~ 187 (449)
+.++++-+. +....+|..++--|+.-+. ++.++..+...|....+++.+.+.++..+...++.++..+...+ .....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 456666665 3446778777777777765 46788899999999999999965555545555555555544443 43444
Q ss_pred hhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC---------CCCCcchhhHHHH
Q 039940 188 DQVRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG---------HPSPSVLIPALRT 257 (449)
Q Consensus 188 ~~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~---------~~~~~v~~~a~~~ 257 (449)
.........+..++... ........- ..... ...... ......+...+. .....-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~-~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKK-NLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hhhhh-hhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 33456666667777611 000000000 00000 000011 111222222221 1223345556666
Q ss_pred HHHhhcC--------------ChhhHHHHHhcCCHHHHHHHhcc----CC------c-----hhHHHHHHHHHHHHhcCC
Q 039940 258 VGNIVTG--------------DDFQTQCVINHGAVPYLLALLIN----NH------K-----KSIKKESCWTVSNITAGN 308 (449)
Q Consensus 258 l~~l~~~--------------~~~~~~~~~~~~~l~~L~~ll~~----~~------~-----~~v~~~a~~~l~nl~~~~ 308 (449)
+-.++.. .+..++.+...|+++.++..+.. .. + ...-..+..+|-|.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 6555311 12234455667889999888852 10 0 112334566666666555
Q ss_pred HHHHHHHHH--CCChHHHHHHh----hcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHH---HHhh----cc---
Q 039940 309 RKQIQAVID--AGLIVPLVNLL----QDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP---LCDL----LL--- 372 (449)
Q Consensus 309 ~~~~~~l~~--~~~~~~L~~ll----~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~---L~~l----l~--- 372 (449)
.++..+++. .+.++.+...+ ..........++..+.|+..+ ++..+..+...++... +... ..
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 555555553 23333333322 222345567788889999876 4444444443322111 1111 11
Q ss_pred ----CCCHHHHHHHHHHHHHHHHhhh
Q 039940 373 ----CADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 373 ----~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
...-++..-+++++.|+++..+
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeCc
Confidence 1122456667777777776544
No 230
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=1.3 Score=43.20 Aligned_cols=230 Identities=13% Similarity=0.048 Sum_probs=130.6
Q ss_pred hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC---CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC-
Q 039940 148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK---PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT- 223 (449)
Q Consensus 148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~- 223 (449)
+.++++.++..-..-+...+-...=.+++.+.... .........-.-|.+.+-|+-.|..++.+|+..+.++---.
T Consensus 127 E~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~d 206 (1005)
T KOG1949|consen 127 ENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRD 206 (1005)
T ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCC
Confidence 55666666654433222222222223344443332 11111222333466777788889999999999998876321
Q ss_pred -h---hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcC----CHHHHHHHhccCCchhHHH
Q 039940 224 -N---DKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHG----AVPYLLALLINNHKKSIKK 295 (449)
Q Consensus 224 -~---~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~----~l~~L~~ll~~~~~~~v~~ 295 (449)
+ +..+.+++. =...+.++|.++-+.+|..|..-+..+.+.. ..++... ++..+..-+......+||-
T Consensus 207 pd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f----We~iP~~i~~~ll~kI~d~~a~dt~s~VR~ 281 (1005)
T KOG1949|consen 207 PDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKF----WEMIPPTILIDLLKKITDELAFDTSSDVRC 281 (1005)
T ss_pred CCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhhhccchheeh
Confidence 1 223344443 3578899999999999999988776665421 1222222 3444444444443567888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC
Q 039940 296 ESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD 375 (449)
Q Consensus 296 ~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 375 (449)
.....|..+... |..- .+.+ .++|.+-..+.+.+..||..+...|..+=.. ..-.+..---++.++.-|..++
T Consensus 282 svf~gl~~~l~n-p~sh-~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v----ra~~f~~I~~~d~~l~~L~~d~ 354 (1005)
T KOG1949|consen 282 SVFKGLPMILDN-PLSH-PLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAV----RAAKFWKICPMDHILVRLETDS 354 (1005)
T ss_pred hHhcCcHHHHcC-ccch-hHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhh----hhhhhhccccHHHHHHHHhccc
Confidence 888888888653 2221 2222 2566777778888889998888888776433 1112222223555666666666
Q ss_pred HHHHHHHHHHHHHH
Q 039940 376 PEIVTVCLKGLENI 389 (449)
Q Consensus 376 ~~~~~~~~~~l~~l 389 (449)
.++....+..+-+.
T Consensus 355 ~~v~rr~~~li~~s 368 (1005)
T KOG1949|consen 355 RPVSRRLVSLIFNS 368 (1005)
T ss_pred cHHHHHHHHHHHHh
Confidence 65555444444333
No 231
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.89 E-value=2.1 Score=40.51 Aligned_cols=157 Identities=12% Similarity=0.164 Sum_probs=109.9
Q ss_pred HHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCch----hHHHHHHHHHHHHhcCCHHHH
Q 039940 237 GPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKK----SIKKESCWTVSNITAGNRKQI 312 (449)
Q Consensus 237 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~----~v~~~a~~~l~nl~~~~~~~~ 312 (449)
..+...+.+++..-+..++.-+..++.. ......++...++..|..++.++ +. .+......+++.+..+.--..
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg-~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDG-RVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4566677788877788888888888775 67778888999999999999887 43 344444455554443221000
Q ss_pred HHHHHCCChHHHHHHhh--cCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 039940 313 QAVIDAGLIVPLVNLLQ--DAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENIL 390 (449)
Q Consensus 313 ~~l~~~~~~~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~ 390 (449)
..+...++.....+.+ ..+..+-..|+..|.+++.. +......+.++--++.|+.-++..|..+...++..+..++
T Consensus 164 -~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~-s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 -ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG-SDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred -eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC-ChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 0111123333333332 23667788889999999886 5556677777888999999999999999999999999999
Q ss_pred Hhhhhhh
Q 039940 391 KVGEAKK 397 (449)
Q Consensus 391 ~~~~~~~ 397 (449)
...++..
T Consensus 242 ~~a~~~~ 248 (713)
T KOG2999|consen 242 RKAPDDK 248 (713)
T ss_pred hhCChHH
Confidence 8887653
No 232
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.83 E-value=1.1 Score=36.81 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=94.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHH
Q 039940 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKV 103 (449)
Q Consensus 24 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 103 (449)
++.+++...+.+..++..|+..+.......--.+.. .+|.++.+..+++ +.++..|...+..+....+.....
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 567888888999999999999998887543222222 5899999999999 899999999999999866655544
Q ss_pred HHhCCChHHHHHhhC---CCC-hHH---HHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc-------cHHHHH
Q 039940 104 LIDHGAVPIFVKLLA---SPS-DDV---REQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA-------RLSMLR 169 (449)
Q Consensus 104 ~~~~~~i~~L~~~l~---~~~-~~~---~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~~~~ 169 (449)
-...| +..-..+-. .+. ... ....+..+..+...+...|..+ +..+++.+..+. .+.-..
T Consensus 83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~ 156 (187)
T PF12830_consen 83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLD 156 (187)
T ss_pred HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHH
Confidence 44333 333333221 111 111 4555666777766554444443 556666664322 344456
Q ss_pred HHHHHHHHhhcCC
Q 039940 170 IGTWTLSNLCKGK 182 (449)
Q Consensus 170 ~a~~~l~~l~~~~ 182 (449)
...++..||+.-+
T Consensus 157 ~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 157 FLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHhcCC
Confidence 6666666776654
No 233
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.80 E-value=0.81 Score=37.14 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=90.9
Q ss_pred chhhHHHHHHHhhcCChh-----hHHHHHh------cCCH-HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039940 250 VLIPALRTVGNIVTGDDF-----QTQCVIN------HGAV-PYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID 317 (449)
Q Consensus 250 v~~~a~~~l~~l~~~~~~-----~~~~~~~------~~~l-~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~ 317 (449)
+|..|+.+|..++...+. +-..++. ...- ..+.-++.++ ++++|..|+.++..+..++.......-+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 567777777777765221 1111221 1223 3344445666 9999999999999999887665544332
Q ss_pred CC-------------------ChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHH
Q 039940 318 AG-------------------LIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE 377 (449)
Q Consensus 318 ~~-------------------~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~ 377 (449)
.+ +-..|+..+..+ +..+....+.++..++....-...+.=.-..++..+..++.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 21 122344455544 7778889999999999875332221100112456666777889999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 039940 378 IVTVCLKGLENILKVGEA 395 (449)
Q Consensus 378 ~~~~~~~~l~~l~~~~~~ 395 (449)
++..++.++..++...+.
T Consensus 161 v~v~~l~~~~~l~s~~~~ 178 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQPP 178 (182)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 999999999988866543
No 234
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.72 E-value=1 Score=41.52 Aligned_cols=142 Identities=17% Similarity=0.167 Sum_probs=83.4
Q ss_pred chHHHHHHhhcCCC-HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC------CCCCcchhhHHHHHHHhhcC
Q 039940 192 PVLPALAQLIHLDD-EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG------HPSPSVLIPALRTVGNIVTG 264 (449)
Q Consensus 192 ~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~------~~~~~v~~~a~~~l~~l~~~ 264 (449)
.-...+-+-+..+| ..-+..|+..+..++.........++. ..+-.++. ..++.-+..|+..++.++..
T Consensus 210 dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~----~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k 285 (370)
T PF08506_consen 210 DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM----QYIQQLLQQYASNPSNNWRSKDGALYLIGALASK 285 (370)
T ss_dssp SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBS
T ss_pred CHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhh
Confidence 33445555554333 445667888888888554433222222 22222332 34566777899999998865
Q ss_pred Chh------------hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCc
Q 039940 265 DDF------------QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAE 332 (449)
Q Consensus 265 ~~~------------~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 332 (449)
... ....+....++|-|. --.+. .+-++..|++.+..+-..-+. ..+. +++|.+++.|.+++
T Consensus 286 ~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~-~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~~ 359 (370)
T PF08506_consen 286 GSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNS-HPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSSS 359 (370)
T ss_dssp S--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S--HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS-
T ss_pred hccccCCcccccccccHHHHHHHHhHHHhc-ccCCC-CcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCCC
Confidence 421 223444555666555 11133 678999999999999664332 1233 38999999999999
Q ss_pred hhHHHHHHHHH
Q 039940 333 FDIKKEAAWAI 343 (449)
Q Consensus 333 ~~v~~~a~~aL 343 (449)
.-|...|+.|+
T Consensus 360 ~vv~tyAA~~i 370 (370)
T PF08506_consen 360 YVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred cchhhhhhhhC
Confidence 99999988775
No 235
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=0.36 Score=41.95 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=104.8
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHH
Q 039940 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 270 (449)
Q Consensus 191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 270 (449)
...+.-.+..|.++|.......+..+..++...++.....+. .++-.+++-+++....|-..||.+++.+.........
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888899999999999999999877765554444 4677777888888888999999999998765444433
Q ss_pred HHHhcCCHHHHHHHh-ccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940 271 CVINHGAVPYLLALL-INN--HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNAT 347 (449)
Q Consensus 271 ~~~~~~~l~~L~~ll-~~~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 347 (449)
. -++.++..| ... .+.-++..|-.+|..+..+-... .+++.|+..+...++.++..++.++.+..
T Consensus 166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 3 233333333 222 13458888999998887643222 25667777888889999999988888877
Q ss_pred ccC
Q 039940 348 KAG 350 (449)
Q Consensus 348 ~~~ 350 (449)
...
T Consensus 234 ~rl 236 (334)
T KOG2933|consen 234 IRL 236 (334)
T ss_pred eec
Confidence 654
No 236
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.69 E-value=2.5 Score=36.26 Aligned_cols=138 Identities=18% Similarity=0.112 Sum_probs=89.8
Q ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940 153 IPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIE 232 (449)
Q Consensus 153 ~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 232 (449)
+.++..+.+..+++.+...+.+|..++..+. .....++..+..+...+......-+.+.+..+...++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence 4455556677889999999999999999861 3335667777777777777776666666666665554221
Q ss_pred hCcHHHHHHh--hC-----C---CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHh-ccCCchhHHHHHHHHH
Q 039940 233 AGVCGPLVEL--LG-----H---PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALL-INNHKKSIKKESCWTV 301 (449)
Q Consensus 233 ~~~~~~L~~l--l~-----~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~~~l 301 (449)
+.+..++.. ++ . ...+........+..+|...++.. ..+++.+..++ ++. ++.++..+..++
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~-~~~~~alale~l 146 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSC-DEVAQALALEAL 146 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 233333333 11 1 122333444557777777666522 23677888888 666 788888999999
Q ss_pred HHHhc
Q 039940 302 SNITA 306 (449)
Q Consensus 302 ~nl~~ 306 (449)
..++.
T Consensus 147 ~~Lc~ 151 (234)
T PF12530_consen 147 APLCE 151 (234)
T ss_pred HHHHH
Confidence 99984
No 237
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.66 E-value=2 Score=42.12 Aligned_cols=153 Identities=11% Similarity=0.072 Sum_probs=98.6
Q ss_pred hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh-hCCCCCcchhhHHHHHHHhhcCCh
Q 039940 188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL-LGHPSPSVLIPALRTVGNIVTGDD 266 (449)
Q Consensus 188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~l~~l~~~~~ 266 (449)
...+.++|.|...+++.+..++..++..+...+..-+. . .+..-++|.+..+ +++.+..++..++-|++.++..-+
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~--~-~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV--P-FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH--H-HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 44578889999999999999999999999888866542 2 4445677777765 345677899999999988873211
Q ss_pred hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHH--HHHHHH
Q 039940 267 FQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKE--AAWAIS 344 (449)
Q Consensus 267 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~--a~~aL~ 344 (449)
...-...+..+.+..+.. ++.+......+..++....... ..+.-..++|.++.+...+.....+. .+..+.
T Consensus 462 ----~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~ 535 (700)
T KOG2137|consen 462 ----KAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIR 535 (700)
T ss_pred ----HHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHHHHHHHHHHHH
Confidence 111122345555556666 8888777777777766532222 34445678898888877664333322 233444
Q ss_pred Hhhcc
Q 039940 345 NATKA 349 (449)
Q Consensus 345 ~l~~~ 349 (449)
.+...
T Consensus 536 ~ml~~ 540 (700)
T KOG2137|consen 536 LMLSA 540 (700)
T ss_pred HHHhh
Confidence 44443
No 238
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.65 E-value=4.4 Score=38.93 Aligned_cols=288 Identities=15% Similarity=0.092 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHH
Q 039940 36 NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVK 115 (449)
Q Consensus 36 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 115 (449)
...|..|+..|+.....-.-..... +....-+++......+.+..+...+..+......... ....-....+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R~~fF~~I-- 75 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMRAEFFRDI-- 75 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHHHHHHHHH--
Confidence 3456677777777665432222222 3444456677666578999999999988874433111 1111111111
Q ss_pred hhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc--------------------------cHHHHH
Q 039940 116 LLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA--------------------------RLSMLR 169 (449)
Q Consensus 116 ~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--------------------------~~~~~~ 169 (449)
-....++.-..-+.+|..|+.+.... .. .+.+..+.+...+.... +.....
T Consensus 76 -~~~~~~~d~~~~l~aL~~LT~~Grdi-~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 76 -SDPSNDDDFDLRLEALIALTDNGRDI-DF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred -hcCCCchhHHHHHHHHHHHHcCCcCc-hh-cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 22233333445566667776554333 11 35566666665552111 222333
Q ss_pred HHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccC---ChhHHHHHHHhCcHHHHHHhhC
Q 039940 170 IGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDG---TNDKIQAVIEAGVCGPLVELLG 244 (449)
Q Consensus 170 ~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~ll~ 244 (449)
..+..+.++.+.. .........+++..++.+.. +.+......++..+-.+... +++... .++..|....
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~- 226 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV- 226 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh-
Confidence 4444445555444 22223333445554444432 22333334444443333221 111111 2333344332
Q ss_pred CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-C
Q 039940 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN-----HKKSIKKESCWTVSNITAGNRKQIQAVID-A 318 (449)
Q Consensus 245 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~ 318 (449)
...+....+-.++.|++...-.. ..+..|..+|..+ .+..+.+-|...+..+..+..+....-+. .
T Consensus 227 -~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 227 -NSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred -cccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence 22367777888899988643221 1456677777322 14556778888898888755222211122 2
Q ss_pred C--ChHHHHHHhhcCchhHHHHHHHHHHHhhc
Q 039940 319 G--LIVPLVNLLQDAEFDIKKEAAWAISNATK 348 (449)
Q Consensus 319 ~--~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 348 (449)
- +++.+...++.+++.+-.+....+.++..
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 2 78888888888887887788888888873
No 239
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=94.61 E-value=2.8 Score=36.49 Aligned_cols=214 Identities=18% Similarity=0.121 Sum_probs=122.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCC--CC-cHHHHH------Hc-CCHH----HHHHhhcCCCCHHHHHHHHHHHHH
Q 039940 27 MVAGVWSDDNSMQLEAATQFRRLLSIER--SL-PIDEVI------QA-GIVP----RFVEFLLREDYPRLQFEAAWVLTN 92 (449)
Q Consensus 27 l~~~l~s~~~~~~~~a~~~L~~l~~~~~--~~-~~~~~~------~~-~~i~----~L~~ll~~~~~~~~~~~a~~~L~~ 92 (449)
-+.+|.+.++..-..|+..|.++...-. .+ ..+.+. .. |..+ .+++-+.++. ..+.++..|..
T Consensus 12 ~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~ 88 (262)
T PF14225_consen 12 AVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSR 88 (262)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHH
Confidence 4677778777777778888877765421 11 111111 11 3333 3444445543 34556666666
Q ss_pred hcCC-------ChhhhHHHHhCCChHHHHHhhCCCC----hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc
Q 039940 93 IASG-------TSVNTKVLIDHGAVPIFVKLLASPS----DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE 161 (449)
Q Consensus 93 l~~~-------~~~~~~~~~~~~~i~~L~~~l~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 161 (449)
+... +++.+-.+.-.+.+|.++..+.+++ ......++..|+.+|.... ...+..++....+
T Consensus 89 L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~ 160 (262)
T PF14225_consen 89 LTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAK 160 (262)
T ss_pred HhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHh
Confidence 6552 1223333333456788888887766 2334456678888874321 2233344444433
Q ss_pred cc---cHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHH
Q 039940 162 HA---RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGP 238 (449)
Q Consensus 162 ~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 238 (449)
.. ..+....++..+..-.. |. .....+..+..++.++-+.++..++..|..+...-+-... ...+++.+
T Consensus 161 ~~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlisp 232 (262)
T PF14225_consen 161 GRFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISP 232 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHH
Confidence 22 23444444444443221 21 1246677889999888899999999999998866443322 44568889
Q ss_pred HHHhhCCCCCcchhhHHHHHHHhh
Q 039940 239 LVELLGHPSPSVLIPALRTVGNIV 262 (449)
Q Consensus 239 L~~ll~~~~~~v~~~a~~~l~~l~ 262 (449)
+.++++++. ..+|+.++-.+.
T Consensus 233 llrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 233 LLRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred HHHHhCCcc---HHHHHHHHHHHH
Confidence 999997765 445565555443
No 240
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.61 E-value=6 Score=40.35 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=77.0
Q ss_pred hhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc
Q 039940 251 LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD 330 (449)
Q Consensus 251 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~ 330 (449)
+..+.-+++++|-..+... ...+|.|++=|....+..+|.+...+++.+|.+.. .+++ ..+|.+-..|.+
T Consensus 948 ra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~d-~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 948 RAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMTD-RYIPMIAASLCD 1017 (1529)
T ss_pred HHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHHH-HhhHHHHHHhcC
Confidence 3344445555554433222 13456666666554355666666666666655321 1222 468888888999
Q ss_pred CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCC-hHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940 331 AEFDIKKEAAWAISNATKAGTQEQIKYLVREGC-IKPLCDLLLCADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 331 ~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~-~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
+++-||+.+...|.++...+ .. .-.|. +-.++..+-+.+++++.-+-.++..++...+
T Consensus 1018 p~~iVRrqt~ilL~rLLq~~---~v---Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFG---IV---KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred chHHHHHHHHHHHHHHHhhh---hh---hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999998742 11 12222 2223333345677888888888888776553
No 241
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.60 E-value=0.89 Score=36.91 Aligned_cols=142 Identities=19% Similarity=0.152 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCC-Chh----hhHHHHh------C-CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhc
Q 039940 82 LQFEAAWVLTNIASG-TSV----NTKVLID------H-GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHE 149 (449)
Q Consensus 82 ~~~~a~~~L~~l~~~-~~~----~~~~~~~------~-~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 149 (449)
+|..|+.+|..++.. ++. +...++- . .-.+.+--++.++++++|..|+.++..+..+...+-....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777764 111 1111211 1 223344445678899999999999999876543221111111
Q ss_pred C-------------------CHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC--ChhhhhchHHHHHHhhcCCCHHH
Q 039940 150 E-------------------ALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP--PFDQVRPVLPALAQLIHLDDEEV 208 (449)
Q Consensus 150 ~-------------------~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~~ 208 (449)
. .-..|+..+....+..+..+.+.++..+...-|-. .......++..+..++.+.|+++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 11233444545567788889999999999886433 33444667777777888899999
Q ss_pred HHHHHHHHHHcccCC
Q 039940 209 LRNVCWTLSNLSDGT 223 (449)
Q Consensus 209 ~~~~~~~l~~l~~~~ 223 (449)
+..++.+++.+....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999988876543
No 242
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.59 E-value=0.63 Score=38.21 Aligned_cols=125 Identities=15% Similarity=0.100 Sum_probs=83.0
Q ss_pred CCCCCcchhhHHHHHHHhhcCChhhHHHHH----------------hcCCHHHHHHHhccCC-----chhHHHHHHHHHH
Q 039940 244 GHPSPSVLIPALRTVGNIVTGDDFQTQCVI----------------NHGAVPYLLALLINNH-----KKSIKKESCWTVS 302 (449)
Q Consensus 244 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~----------------~~~~l~~L~~ll~~~~-----~~~v~~~a~~~l~ 302 (449)
.+++......++..|+|++.... ....++ +...+..|+..+..+. ...-....+.++.
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 34555567778888889887633 333222 1235777777776521 2344566888999
Q ss_pred HHhcCCHHHHHHHHH--CCC--hHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHH---cCChHHHHhhcc
Q 039940 303 NITAGNRKQIQAVID--AGL--IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR---EGCIKPLCDLLL 372 (449)
Q Consensus 303 nl~~~~~~~~~~l~~--~~~--~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~---~~~~~~L~~ll~ 372 (449)
|++. .++.+..+++ .+. +..|+..+...+..-|.-++.+|.|++-. .+....+.. .++++.|+--+.
T Consensus 84 NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 84 NLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcCchhhhhHHHHHhhcc
Confidence 9966 4677878875 344 77888888888888888889999999984 444555554 245555555443
No 243
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=94.59 E-value=0.87 Score=35.41 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=64.4
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhh
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL-CADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
.+..|..-+.++++.++..|+..|-.++.+++..+...+...++++.|..++. ..++.|+.+++..+.........
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 45677777888999999999999999999988888888888899999999987 46778999999999888866543
No 244
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.58 E-value=0.3 Score=38.03 Aligned_cols=76 Identities=7% Similarity=0.032 Sum_probs=65.9
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhh
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
.+..|..-+.+.++.++..|+..|-.++.+++..+...+...+++..|..++.. .++.|+.+++..+.........
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 455677778888999999999999999999998888888888999999999987 6889999999999988766543
No 245
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.46 E-value=4.2 Score=37.90 Aligned_cols=187 Identities=13% Similarity=0.120 Sum_probs=116.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcCCC---hhhhHHHHhCCChHHHHHhhCC-------CChHHHHHHHHHHHHHhcCC
Q 039940 70 FVEFLLREDYPRLQFEAAWVLTNIASGT---SVNTKVLIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNIVAHS 139 (449)
Q Consensus 70 L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~~l~~-------~~~~~~~~a~~~L~~l~~~~ 139 (449)
+..+++..+ ++-+.+|+....+.+... ..+++.+.+.=+.+.+-+++.+ ++.-.+.-++.+|..+|+..
T Consensus 16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 555666666 688899999999998743 3455667787778888888865 33456677788888888764
Q ss_pred Cch-hhhHhhcCCHHHHHHHHcccccHH------HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC----HHH
Q 039940 140 PGC-RNLVLHEEALIPLLAQLNEHARLS------MLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDD----EEV 208 (449)
Q Consensus 140 ~~~-~~~~~~~~~i~~l~~~l~~~~~~~------~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~----~~~ 208 (449)
.-. .+.+ -+.||.++..+.+..|++ +...+..+|..++...+........|+++.+.++-.-.+ ..+
T Consensus 95 ElAsh~~~--v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 95 ELASHEEM--VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhccCHHH--HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 321 1112 246788888886554444 788899999999998777677777899999987765332 322
Q ss_pred HHHHHHHHH-HcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhh
Q 039940 209 LRNVCWTLS-NLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIV 262 (449)
Q Consensus 209 ~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~ 262 (449)
...++.... .+-..+.. ...+. .++..+..=+...+...+-+.|..|..+.
T Consensus 173 al~Vlll~~~~~~cw~e~-~~~fl--ali~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSET-IERFL--ALIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHHHHHHHHHhcccCcCC-HHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 222222111 11112211 11111 12344444444556667778888887553
No 246
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.42 E-value=0.75 Score=37.79 Aligned_cols=122 Identities=12% Similarity=0.082 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHcccCChhHHHHHHH----------------hCcHHHHHHhhCC------CCCcchhhHHHHHHHh
Q 039940 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIE----------------AGVCGPLVELLGH------PSPSVLIPALRTVGNI 261 (449)
Q Consensus 204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~----------------~~~~~~L~~ll~~------~~~~v~~~a~~~l~~l 261 (449)
++......++..|+|+++.+..... +++ ...+..|+..+.. ....-......++.|+
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEK-LLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHH-HHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 3444556677777777765543221 221 2345666666544 2334556678889999
Q ss_pred hcCChhhHHHHHhc--CC--HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---CCChHHHHHHhh
Q 039940 262 VTGDDFQTQCVINH--GA--VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID---AGLIVPLVNLLQ 329 (449)
Q Consensus 262 ~~~~~~~~~~~~~~--~~--l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~~~~L~~ll~ 329 (449)
+.. +..++.+.+. +. +..|+..+++. +..-|.-++.+|.|+|...... ..++. .+++|.|+--+.
T Consensus 86 S~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQL-PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCC-HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 886 6667766643 34 77888888888 7777788999999999854433 34443 356666655554
No 247
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.30 E-value=0.19 Score=35.62 Aligned_cols=72 Identities=10% Similarity=0.055 Sum_probs=57.8
Q ss_pred hHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 321 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
+...+..+.++.+.+|..++..|.+++...+ ....-..+++..+...++++|+.+...|+.+|..+....+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4455667788899999999999999999755 11112245788888899999999999999999999988765
No 248
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.13 E-value=0.66 Score=36.99 Aligned_cols=147 Identities=10% Similarity=0.057 Sum_probs=86.5
Q ss_pred hhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhh
Q 039940 190 VRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 268 (449)
Q Consensus 190 ~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 268 (449)
....++.+..+++++ +..+|..++++++.+..-++...+.+... .+.- .-...+......... .......
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~--~~~~~~~~~~~~~l~-~~~~~~~---- 78 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSK--SSENSNDESTDISLP-MMGISPS---- 78 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCcc--ccccccccchhhHHh-hccCCCc----
Confidence 467888999999876 58999999999999988777554422111 0100 000111111221111 1111111
Q ss_pred HHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940 269 TQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNAT 347 (449)
Q Consensus 269 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 347 (449)
.+......++..|+.+|+++.-..-...+..++.++... .......+- .++|.+++.+...+...++...+-|+.++
T Consensus 79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 223333456788899998774444555677777777641 112232332 48999999998777688887777777665
No 249
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.03 E-value=2.5 Score=40.03 Aligned_cols=167 Identities=11% Similarity=0.072 Sum_probs=112.7
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCC----cchhhHHHHHHHhhcCChh
Q 039940 192 PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSP----SVLIPALRTVGNIVTGDDF 267 (449)
Q Consensus 192 ~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~----~v~~~a~~~l~~l~~~~~~ 267 (449)
.....+...+.+++...+..++..+..++... .....++...++..|..++.++.. ++....+.++..+..+.-
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 34456777777888777777888888887544 455667888889999999987654 455555666655543321
Q ss_pred hHHHHHhcCCHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 039940 268 QTQCVINHGAVPYLLALLINN-HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNA 346 (449)
Q Consensus 268 ~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 346 (449)
.........++.....+..-+ .+..+-..|...+-++..+++...+.+.+.--+..|++.+...+..++..|...+..+
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 111111222333333333211 1556777888888888888877777777888899999999999999999988888888
Q ss_pred hccCCHHHHHHHHH
Q 039940 347 TKAGTQEQIKYLVR 360 (449)
Q Consensus 347 ~~~~~~~~~~~l~~ 360 (449)
...+..+.++.+.+
T Consensus 241 ~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 241 FRKAPDDKRFEMAK 254 (713)
T ss_pred HhhCChHHHHHHHH
Confidence 88766655554443
No 250
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=93.99 E-value=1 Score=33.68 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=56.0
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHH-HhcchHHHHHHHhcCC--------CHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLV-EGAEGFKKIEDLKSHG--------NNGI 433 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~--------~~~i 433 (449)
+++.|..-|++.++.|..+++.+|..++..+... |...+ +....++.+.+....+ +..|
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~------------f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~V 106 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD------------FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKV 106 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH------------HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHH
Confidence 6778888899889999999999999999887542 34333 3334566666665433 3569
Q ss_pred HHHHHHHHHHhcCCC
Q 039940 434 REKAVTILETYWLKG 448 (449)
Q Consensus 434 ~~~a~~~i~~~~~~~ 448 (449)
+..|..+++-.|+++
T Consensus 107 R~~A~El~~~if~~~ 121 (122)
T cd03572 107 REEAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999876
No 251
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.74 E-value=12 Score=40.36 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=55.8
Q ss_pred cCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 275 HGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 275 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
.+++|.|..-|.+. +..+|..|...++.+......... =-.......++.-+.+.+++||..+.....++...
T Consensus 258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 46899999999988 999999999999999875433222 01124566677777888899999999888887776
No 252
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.62 E-value=4.6 Score=35.26 Aligned_cols=223 Identities=12% Similarity=0.060 Sum_probs=124.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC--CCCHHHHHHHHHHHHHhcCCChhhhHHH
Q 039940 27 MVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR--EDYPRLQFEAAWVLTNIASGTSVNTKVL 104 (449)
Q Consensus 27 l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 104 (449)
+=..|.++|+..|..|+..|...+..-.... ....-+..|++.+.+ .+ ......++.++..+..... .....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~-~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKN-FSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcC-CChhh
Confidence 4456789999999999999998876532111 111124444444332 23 3444444666666664211 11101
Q ss_pred HhCCChHHHHHhhC--CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940 105 IDHGAVPIFVKLLA--SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 105 ~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
...++..+.+... +-....|..+..++..+.......-. -+..+.+..++..+....||.-...+...+..+....
T Consensus 78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 1122333333222 23467788888888888755322111 1133467778888877779988888888888887765
Q ss_pred CCCChhhhhchHHHHHHhhc-----C-CCH-H-HHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhH
Q 039940 183 PQPPFDQVRPVLPALAQLIH-----L-DDE-E-VLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPA 254 (449)
Q Consensus 183 ~~~~~~~~~~~l~~l~~ll~-----~-~~~-~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a 254 (449)
+. ....+.....+....- . +|+ . .+...-.+|.+.....+.. ..-.++.+++-|.++.+.++..+
T Consensus 156 ~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 156 DI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred cc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHHH
Confidence 42 2222333333332221 1 122 1 1222223333332233322 23568999999999999999999
Q ss_pred HHHHHHhhcC
Q 039940 255 LRTVGNIVTG 264 (449)
Q Consensus 255 ~~~l~~l~~~ 264 (449)
+.+|...+..
T Consensus 229 L~tL~~c~~~ 238 (262)
T PF14500_consen 229 LQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 253
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.53 E-value=10 Score=42.56 Aligned_cols=200 Identities=11% Similarity=0.099 Sum_probs=110.1
Q ss_pred cHHHHHHHHHHHHHhhcCCCC----CChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHH
Q 039940 164 RLSMLRIGTWTLSNLCKGKPQ----PPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGP 238 (449)
Q Consensus 164 ~~~~~~~a~~~l~~l~~~~~~----~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 238 (449)
+..+..+|+..|..++...-. ..+.....++..+..++. +.+.+++..++.|+.++......+. .+ +.+.
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nI----kS-GWkt 1224 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNV----KS-GWKS 1224 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh----hc-CcHH
Confidence 566777888888887765411 222333567777777665 4578999999999999886544332 33 3455
Q ss_pred HHHhhC----CCCCcchhhHHHHHHHhhcCChhhH-----HHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc---
Q 039940 239 LVELLG----HPSPSVLIPALRTVGNIVTGDDFQT-----QCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA--- 306 (449)
Q Consensus 239 L~~ll~----~~~~~v~~~a~~~l~~l~~~~~~~~-----~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--- 306 (449)
++.++. ..++.+...|..++..++...-... ..+ ...+..+....+...+.++--.|...|.+++.
T Consensus 1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 555554 4566777778887776664311100 011 12444555555444245555566666665521
Q ss_pred -CCH-----------------------HHHHHH-----HHCCChHHHH---HHhhcCchhHHHHHHHHHHHhhccCC---
Q 039940 307 -GNR-----------------------KQIQAV-----IDAGLIVPLV---NLLQDAEFDIKKEAAWAISNATKAGT--- 351 (449)
Q Consensus 307 -~~~-----------------------~~~~~l-----~~~~~~~~L~---~ll~~~~~~v~~~a~~aL~~l~~~~~--- 351 (449)
+.. +....+ .....+|.|. ++..+..++||..|+.+|-.+....+
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 000 000000 0012333333 34566789999999999988776532
Q ss_pred -HHHHHHHHHcCChHHHHhhc
Q 039940 352 -QEQIKYLVREGCIKPLCDLL 371 (449)
Q Consensus 352 -~~~~~~l~~~~~~~~L~~ll 371 (449)
++....+++ +++-+|.+-+
T Consensus 1383 s~~~W~~if~-~VLFPIFd~l 1402 (1780)
T PLN03076 1383 SLPLWERVFE-SVLFPIFDYV 1402 (1780)
T ss_pred CHHHHHHHHH-HHHHHHHHHH
Confidence 333333333 3455554443
No 254
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.34 E-value=0.4 Score=33.99 Aligned_cols=77 Identities=8% Similarity=0.057 Sum_probs=58.4
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHH
Q 039940 278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKY 357 (449)
Q Consensus 278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 357 (449)
++..+..+.++ .+.+|..+...|+.+..... .....-.+++..+...++++++-|-.+|..+|..++.....+....
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 45567777888 88899999999999997543 1112224678889999999999999999999999998743333333
No 255
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=93.33 E-value=3.6 Score=36.21 Aligned_cols=159 Identities=19% Similarity=0.203 Sum_probs=98.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCC--ChHHHHHhhC----CCChHHHHHHHHHHHHHhcCCC
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHG--AVPIFVKLLA----SPSDDVREQAVWALGNIVAHSP 140 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~~l~----~~~~~~~~~a~~~L~~l~~~~~ 140 (449)
...+...+..-. .+.+.-++..++-++. ++.....+...+ +...+..++. +..+..+-.++++++|+....
T Consensus 65 ~~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~- 141 (268)
T PF08324_consen 65 LILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP- 141 (268)
T ss_dssp HHHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC-
Confidence 455566666655 4667888999888877 455555554443 2444554443 256788888999999997654
Q ss_pred chhhhHhhcC--CHHHHHHHHcccc---cHHHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc-C-CCHHHHHH
Q 039940 141 GCRNLVLHEE--ALIPLLAQLNEHA---RLSMLRIGTWTLSNLCKGK--PQPPFDQVRPVLPALAQLIH-L-DDEEVLRN 211 (449)
Q Consensus 141 ~~~~~~~~~~--~i~~l~~~l~~~~---~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll~-~-~~~~~~~~ 211 (449)
..+..+.... .+...+..+.... +..++..++..+.|++... ...........+..+...+. . .|++....
T Consensus 142 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 142 PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 4455554322 2333333332332 6888889999999987654 11122233346666777433 2 58999999
Q ss_pred HHHHHHHcccCChhHHH
Q 039940 212 VCWTLSNLSDGTNDKIQ 228 (449)
Q Consensus 212 ~~~~l~~l~~~~~~~~~ 228 (449)
++-+++++...++....
T Consensus 222 ~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 222 LLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp HHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHhccChhHHH
Confidence 99999999966654433
No 256
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.29 E-value=8.1 Score=37.16 Aligned_cols=109 Identities=23% Similarity=0.279 Sum_probs=78.3
Q ss_pred HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940 19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 98 (449)
.-.+.+..+++.+.+.|..++..++..|+.+..- -..++...-+|.+..|.+-+-+.. +.++.+|+.+|+.+-....
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhccC
Confidence 3356677888888899999999999999888643 455667777888888887777777 7999999999998876322
Q ss_pred hhhHHHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcC
Q 039940 99 VNTKVLIDHGAVPIFVKLLA-SPSDDVREQAVWALGNIVAH 138 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~ 138 (449)
..... ....|...++ +++.++|..| +.|+.-+
T Consensus 165 neen~-----~~n~l~~~vqnDPS~EVRr~a---llni~vd 197 (885)
T COG5218 165 NEENR-----IVNLLKDIVQNDPSDEVRRLA---LLNISVD 197 (885)
T ss_pred ChHHH-----HHHHHHHHHhcCcHHHHHHHH---HHHeeeC
Confidence 22222 2456666665 4778999855 4555433
No 257
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.25 E-value=1.8 Score=33.31 Aligned_cols=76 Identities=8% Similarity=-0.048 Sum_probs=63.6
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC---CCHHHHHHHHHHHHHHHHhhhh
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC---ADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~---~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
.+..|..-+.++++.++..|+..|-.++.++...+...+.....+..|..++.. .++.++.+++..+.........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 456777778889999999999999999999888787777777788889998875 4778999999999988876654
No 258
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.22 E-value=1.6 Score=35.83 Aligned_cols=109 Identities=11% Similarity=0.148 Sum_probs=72.0
Q ss_pred CHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhc---------CchhHHHHHHHHHHHh
Q 039940 277 AVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQD---------AEFDIKKEAAWAISNA 346 (449)
Q Consensus 277 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~---------~~~~v~~~a~~aL~~l 346 (449)
-...+++.+.+. .... .....|.-..+ .+..-+..+++.|++..|+++|.. .+......++.|+..+
T Consensus 67 ~p~~~i~~L~~~-~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 67 SPEWYIKKLKSR-PSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcc-CccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 344555666544 2211 22222322222 445667778888888888888754 2457888899999999
Q ss_pred hccCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 039940 347 TKAGTQEQIKYLVR-EGCIKPLCDLLLCADPEIVTVCLKGLENIL 390 (449)
Q Consensus 347 ~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~ 390 (449)
+.. ......++. .+++..|...+.+++..++..++++|..++
T Consensus 144 ~n~--~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNT--KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSS--HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred Hcc--HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 874 455666665 688999999999999999999999998775
No 259
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=93.10 E-value=4.6 Score=40.57 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=110.9
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
..|..++..|.|.+..+...+-..+....... .+++ ++..|++..-+... ..|+.+|..+-. |..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~~-------l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSD-REPW-------LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhcc-chHH-------HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH
Confidence 35778999999999999998888888776543 2221 26667776555443 556667765533 2111
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940 102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 181 (449)
.++..|-.++.. +..|..++..|+.+....|.....+.+...+..|+++|..+.+..+...|+.+|..|.=.
T Consensus 70 ------~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 70 ------HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred ------HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 234566666664 567778999999999988887788889999999999998888999999998888877766
Q ss_pred CCCCChhhhhchHHHHHHhh
Q 039940 182 KPQPPFDQVRPVLPALAQLI 201 (449)
Q Consensus 182 ~~~~~~~~~~~~l~~l~~ll 201 (449)
.|.........++.+..+++
T Consensus 142 ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 142 IPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 55444444445555555554
No 260
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=93.07 E-value=2.5 Score=32.50 Aligned_cols=75 Identities=11% Similarity=0.012 Sum_probs=62.2
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC--HHHHHHHHHHHHHHHHhhh
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD--PEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~--~~~~~~~~~~l~~l~~~~~ 394 (449)
++..|..-+.++++.++..|+..|-.++..+...+...+...+++..|..++.... +.++.+++..+........
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 45567777888999999999999999999988888888888889999999988643 3488999988887776553
No 261
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=6.6 Score=41.74 Aligned_cols=245 Identities=17% Similarity=0.127 Sum_probs=127.5
Q ss_pred CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc---c---ccHHHHHHHHHHHHHhhcCC-CCCChhhhh
Q 039940 119 SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE---H---ARLSMLRIGTWTLSNLCKGK-PQPPFDQVR 191 (449)
Q Consensus 119 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~---~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~ 191 (449)
.+..+++...+.++.++.....+ ..+ .| .+.+++++.. . ....+.+.+..++.-++.+. +........
T Consensus 853 ~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 45567777778888887654322 221 22 4455555531 1 13567788888888888887 677777888
Q ss_pred chHHHHHHhhcC-CCHHHHHHHHHHHHHcccCChh----HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 039940 192 PVLPALAQLIHL-DDEEVLRNVCWTLSNLSDGTND----KIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD 266 (449)
Q Consensus 192 ~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 266 (449)
++++.+....+. .|.++--.++..+++++..-.. ..+....+..++.+.. ..+...+..+++|.+
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~-------- 997 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIM-------- 997 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHH--------
Confidence 889988888765 4677766666666655422110 0111111223333333 223334444555543
Q ss_pred hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhc-------C--chhH-
Q 039940 267 FQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQD-------A--EFDI- 335 (449)
Q Consensus 267 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~-------~--~~~v- 335 (449)
++..|.++..++ ..+||..|+.++-.+.. +........+..-+...++.+|.. + ..++
T Consensus 998 ----------ll~~L~~~~~ds-r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiq 1066 (1610)
T KOG1848|consen 998 ----------LLVHLADLCEDS-RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQ 1066 (1610)
T ss_pred ----------HHHHHHHHhccc-hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHh
Confidence 223344444555 66677777766666653 222222222222233344444441 1 1222
Q ss_pred ------HHHHHHHHHHhhccCCHHHHHHHHHc-C-------ChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940 336 ------KKEAAWAISNATKAGTQEQIKYLVRE-G-------CIKPLCDLLLCADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 336 ------~~~a~~aL~~l~~~~~~~~~~~l~~~-~-------~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 393 (449)
-.-.+.++..+. +++.+.+... | ++..+.++..+.++++...++.++..+....
T Consensus 1067 kqwtet~~ltisgIaklf----~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1067 KQWTETSCLTISGIAKLF----SENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred hhhhhhhhhhHHHHHHHH----HHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 222233333333 3455555442 2 2344444555678888888888877766433
No 262
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=92.98 E-value=7 Score=35.59 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=117.1
Q ss_pred HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHC-C-ChHHHHHHhhcC-----c--------hh
Q 039940 271 CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDA-G-LIVPLVNLLQDA-----E--------FD 334 (449)
Q Consensus 271 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~-~-~~~~L~~ll~~~-----~--------~~ 334 (449)
.+++.. ++.+...|.+. ...+...+...+..++. ........+.+. + -.+.+-+++... + +.
T Consensus 52 ~iL~~~-~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~s 129 (330)
T PF11707_consen 52 SILQNH-LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPS 129 (330)
T ss_pred HHHHHH-HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcC
Confidence 344333 88889999988 78888899999999998 666666666642 2 234455555321 1 28
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHH
Q 039940 335 IKKEAAWAISNATKAGTQEQIKYLVR-EGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLV 413 (449)
Q Consensus 335 v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 413 (449)
+|...+..+..+...+++...+.+.+ .+.+..+..-+..+++++....+..+..-+-.++..... .-...|
T Consensus 130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~--------~K~~~f 201 (330)
T PF11707_consen 130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS--------TKCKLF 201 (330)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh--------hhhhhc
Confidence 99999988888888888888887776 567888888898888899999999988655444433221 113333
Q ss_pred HhcchHHHHHHHhcCCCH----HHHHHHHHHHHHhc
Q 039940 414 EGAEGFKKIEDLKSHGNN----GIREKAVTILETYW 445 (449)
Q Consensus 414 ~~~~~~~~l~~l~~~~~~----~i~~~a~~~i~~~~ 445 (449)
....+..|..+-+..++ .+.+.+...+..+.
T Consensus 202 -n~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lc 236 (330)
T PF11707_consen 202 -NEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALC 236 (330)
T ss_pred -CHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHh
Confidence 44467888888888877 88888888887744
No 263
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=92.88 E-value=1.2 Score=31.86 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=59.2
Q ss_pred HcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHH
Q 039940 360 REGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVT 439 (449)
Q Consensus 360 ~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~ 439 (449)
....+..|+..+..+.......++..+..+.+.... ...+...|+.+-+.++...-+++.+.....
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~ 93 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDE 93 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence 455788888888888888889999999998876543 678889999999999999999999999888
Q ss_pred HHHH
Q 039940 440 ILET 443 (449)
Q Consensus 440 ~i~~ 443 (449)
+++.
T Consensus 94 il~~ 97 (98)
T PF14726_consen 94 ILDQ 97 (98)
T ss_pred HHhc
Confidence 8864
No 264
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.72 E-value=5.5 Score=40.06 Aligned_cols=163 Identities=18% Similarity=0.131 Sum_probs=95.4
Q ss_pred hHHHHHhhCC----CChHHHHHHHHHHHHHhc----CC-----CchhhhHhhcCCHHHHHHHHc---ccccHHHHHHHHH
Q 039940 110 VPIFVKLLAS----PSDDVREQAVWALGNIVA----HS-----PGCRNLVLHEEALIPLLAQLN---EHARLSMLRIGTW 173 (449)
Q Consensus 110 i~~L~~~l~~----~~~~~~~~a~~~L~~l~~----~~-----~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~ 173 (449)
+..+..++.+ .++.++..|+-+++.+.. .. ............++.+...+. ...+.+-+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 5556666654 456788888888877753 21 001111223345666766664 3445677888899
Q ss_pred HHHHhhcCCCCCChhhhhchHHHHHHhhcCC---CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCC
Q 039940 174 TLSNLCKGKPQPPFDQVRPVLPALAQLIHLD---DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSP 248 (449)
Q Consensus 174 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~ 248 (449)
+|+|+-.. ..++.+...+... +..+|..|++++..+....+... .+.+.++..+ .+.
T Consensus 513 aLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~ 574 (618)
T PF01347_consen 513 ALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDP 574 (618)
T ss_dssp HHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-H
T ss_pred HhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCCh
Confidence 99998643 6788888888765 67889999999998876666433 3556666655 356
Q ss_pred cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHH
Q 039940 249 SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300 (449)
Q Consensus 249 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 300 (449)
++|..|+..|... ++.. ..+..+...+....+.+|.......
T Consensus 575 EvRiaA~~~lm~~---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 575 EVRIAAYLILMRC---NPSP-------SVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp HHHHHHHHHHHHT------H-------HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhCchHHHHHHHHHh
Confidence 6888887666332 1221 2455677777666566666554433
No 265
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=92.71 E-value=13 Score=38.09 Aligned_cols=146 Identities=14% Similarity=0.179 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHH
Q 039940 35 DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFV 114 (449)
Q Consensus 35 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 114 (449)
.+.++..+...|.+++-.. .... ...+|.|++-|...+...++.+.+-+++.+|..... .-...+|.+.
T Consensus 944 ~~~vra~~vvTlakmcLah-~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-----m~d~YiP~I~ 1012 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAH-DRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-----MTDRYIPMIA 1012 (1529)
T ss_pred chHHHHHHHHHHHHHHhhh-hHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-----HHHHhhHHHH
Confidence 3567777888888887543 2222 235899999888777567888888788888763222 2224589999
Q ss_pred HhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcC--CHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhc
Q 039940 115 KLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEE--ALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRP 192 (449)
Q Consensus 115 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 192 (449)
..|.++++-+|.+++-.|.+|.... .+.=.| ++..++.++ +.++.++..|=.+++.+..... .......
T Consensus 1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~~vL~~~~--P~~f~~~ 1083 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALL--DANEDIRNDAKFYISEVLQSEE--PNFFPLN 1083 (1529)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHc--ccCHHHHHHHHHHHHHHHhhcC--ccchHHH
Confidence 9999999999999999999997543 111112 244455555 5678899999999998877641 1222234
Q ss_pred hHHHHHHh
Q 039940 193 VLPALAQL 200 (449)
Q Consensus 193 ~l~~l~~l 200 (449)
++..+..+
T Consensus 1084 FVe~i~~l 1091 (1529)
T KOG0413|consen 1084 FVEYIIAL 1091 (1529)
T ss_pred HHHHHHHH
Confidence 55555544
No 266
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.48 E-value=1.2 Score=35.68 Aligned_cols=114 Identities=15% Similarity=0.197 Sum_probs=76.7
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHc--CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC---C
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA--GIVPRFVEFLLREDYPRLQFEAAWVLTNIAS---G 96 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~ 96 (449)
..+..+.++|+|.++..+..++..+...+... ..+.+.+. ..+..++..|+.++...+...++.++..+.. +
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~---~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQC---SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34567788889999999999988888776432 24444333 3477888899988877888888888887764 4
Q ss_pred ChhhhHHHHhC---CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC
Q 039940 97 TSVNTKVLIDH---GAVPIFVKLLASPSDDVREQAVWALGNIVAHSP 140 (449)
Q Consensus 97 ~~~~~~~~~~~---~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 140 (449)
.++..+.+... ++++.++++++. ......++.+|..+....|
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 45555555433 344444444443 5667778888888775443
No 267
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=92.38 E-value=1.3 Score=34.37 Aligned_cols=75 Identities=11% Similarity=0.037 Sum_probs=60.4
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC-CHH---HHHHHHHHHHHHHHhhh
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA-DPE---IVTVCLKGLENILKVGE 394 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~---~~~~~~~~l~~l~~~~~ 394 (449)
++..|..-+.+.++.++..|+..|-.++.+++..+...+....++..|..++.+. ... |+.+++..+........
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 4557777888899999999999999999998777777777777888999988753 333 88999988887776663
No 268
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.34 E-value=1.4 Score=35.43 Aligned_cols=112 Identities=17% Similarity=0.166 Sum_probs=78.1
Q ss_pred CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHh--cCCHHHHHHHhccCCchhHHHHHHHHHHHHhc---CC
Q 039940 234 GVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN--HGAVPYLLALLINNHKKSIKKESCWTVSNITA---GN 308 (449)
Q Consensus 234 ~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~---~~ 308 (449)
.....+..+++++++.-|..++..+...+..++. +.+.+ ...+..++.+++.+..+.+++.++.++..+.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4567788899999998999898888888776532 22222 34678889999887567788899999988874 45
Q ss_pred HHHHHHHHHC---CChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 309 RKQIQAVIDA---GLIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 309 ~~~~~~l~~~---~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
++...++... ++++.++.+++. ......++.+|..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 5544444432 345555555554 57777788888887775
No 269
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=7.9 Score=37.80 Aligned_cols=289 Identities=13% Similarity=0.139 Sum_probs=146.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK 102 (449)
Q Consensus 23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 102 (449)
++..+=+.+.+++..+..-|+-.+.-..++.+++ . ..++-.|.+.+++++ ..++..|+..|+-...++ .++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~-----dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-C-----DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeeccccccc-c-----CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence 5666666777777766666654443333332111 1 122445667777777 678888888777665532 233
Q ss_pred HHHhCCChHHHHHhhCCCC--hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 103 VLIDHGAVPIFVKLLASPS--DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 103 ~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
.+. ..|..++.+.+ .++...|...|+.+..++.. ..+ ....+..+++.-.........+.....|.-+..
T Consensus 487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl 558 (878)
T KOG2005|consen 487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL 558 (878)
T ss_pred HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence 332 25566666544 45666666666666544321 111 112333444332211223333444334444333
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCC---cchhhHHHH
Q 039940 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSP---SVLIPALRT 257 (449)
Q Consensus 181 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~---~v~~~a~~~ 257 (449)
... ..+...+.-+..-+..++..+-..+...+.....+.-.+ +. ..+..+-..+.. .-...|+--
T Consensus 559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~I-q~---q~ll~~cgE~~~~~e~~~~~avLg 626 (878)
T KOG2005|consen 559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKI-QS---QLLLSFCGEHDADLESEQELAVLG 626 (878)
T ss_pred ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEe-ch---hhhhhhcCCCccchhhhccchhhh
Confidence 321 122222222222222232222222211111111110000 00 222222222211 112234444
Q ss_pred HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHH
Q 039940 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKK 337 (449)
Q Consensus 258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~ 337 (449)
++-++.+.+-..++ .+..+-.+|..+ ++.+|+..-.+++-++..+|.. +++..|-+..++.+.++..
T Consensus 627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence 44455553333332 455677788888 8899999999999888777653 4788888888888999999
Q ss_pred HHHHHHHHhhccCCHH
Q 039940 338 EAAWAISNATKAGTQE 353 (449)
Q Consensus 338 ~a~~aL~~l~~~~~~~ 353 (449)
+++.+++-+-.+.+..
T Consensus 694 naIfamGLiGAGTnNA 709 (878)
T KOG2005|consen 694 NAIFAMGLIGAGTNNA 709 (878)
T ss_pred HHHHHhccccCCcchH
Confidence 9999998887765433
No 270
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.30 E-value=0.91 Score=37.48 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=87.6
Q ss_pred CCHHHHH-HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----CCCHHHHHHHHHHHHHhcC-CChhhhHHHHhC
Q 039940 34 DDNSMQL-EAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR----EDYPRLQFEAAWVLTNIAS-GTSVNTKVLIDH 107 (449)
Q Consensus 34 ~~~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~ 107 (449)
+...-|. .|+..|.-++++ .+....+++..+--.+...|.. ...+-++..++.+++.+.. ++++....+...
T Consensus 111 ~~~snRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT 188 (315)
T COG5209 111 ERESNRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT 188 (315)
T ss_pred chhhhHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh
Confidence 3444444 455556566654 4555555565543333333332 2235678899999999997 455666777778
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh-------hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL-------HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
.++|..++.+..+++--+.-++.++..+..++....-... -...+..++..+-+.....+.+.+.++-..+|.
T Consensus 189 eivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 189 EIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 9999999999999988888899999988776643322111 111222223333233344555555555555555
Q ss_pred C
Q 039940 181 G 181 (449)
Q Consensus 181 ~ 181 (449)
.
T Consensus 269 ~ 269 (315)
T COG5209 269 K 269 (315)
T ss_pred C
Confidence 4
No 271
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.00 E-value=11 Score=35.39 Aligned_cols=191 Identities=16% Similarity=0.190 Sum_probs=117.8
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHhcCCC---chhhhHhhcCCHHHHHHHHcc------cccHHHHHHHHHHHHHhhcCC
Q 039940 112 IFVKLLASPSDDVREQAVWALGNIVAHSP---GCRNLVLHEEALIPLLAQLNE------HARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 112 ~L~~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~l~~~l~~------~~~~~~~~~a~~~l~~l~~~~ 182 (449)
-+..+....+++-+-.++.....++.... ..++.+.+.-+++.+-.++.. +++.-.+..++..|..+|+.+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35666777777888888888888886543 235556666566555555532 233334566778888999987
Q ss_pred CCCChhhhhchHHHHHHhhcCC-CHH------HHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhh-H
Q 039940 183 PQPPFDQVRPVLPALAQLIHLD-DEE------VLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIP-A 254 (449)
Q Consensus 183 ~~~~~~~~~~~l~~l~~ll~~~-~~~------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~-a 254 (449)
.-......-.-+|.+...+... |++ ....+..|+..++..... ...++..|.++.+.++-.-++...-.. +
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 5555555567788888888743 222 677888999998877554 456888899999997765554433322 3
Q ss_pred HHHHHHhhcCC---hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 255 LRTVGNIVTGD---DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 255 ~~~l~~l~~~~---~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
+.++--...+. ++....+.. ++..+..=+... +...+-+.|..|..+..
T Consensus 174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHh
Confidence 33332222221 111122211 233344444444 56678889999986654
No 272
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=91.97 E-value=3.8 Score=30.72 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=61.4
Q ss_pred HHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHc-CChHHHHhhccCCC--
Q 039940 299 WTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVRE-GCIKPLCDLLLCAD-- 375 (449)
Q Consensus 299 ~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~~~~L~~ll~~~~-- 375 (449)
.-|++++..++..... ++..|.+-|++.++.|+..++..|..++..|+++++..+.+. ..+..+...-...|
T Consensus 23 ~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~ 97 (122)
T cd03572 23 EEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPL 97 (122)
T ss_pred HHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcc
Confidence 3455555555443332 566888889989999999999999999999988888777653 33444444433222
Q ss_pred ------HHHHHHHHHHHHHHHHh
Q 039940 376 ------PEIVTVCLKGLENILKV 392 (449)
Q Consensus 376 ------~~~~~~~~~~l~~l~~~ 392 (449)
..||..|-+++..++..
T Consensus 98 ~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 98 KGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred cCcchhHHHHHHHHHHHHHHhcc
Confidence 34788888888877753
No 273
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.78 E-value=8.9 Score=38.14 Aligned_cols=135 Identities=15% Similarity=0.152 Sum_probs=81.4
Q ss_pred chHHHHHHhhcCC----CHHHHHHHHHHHHHccc----CChhHHHHHHHhCcHHHHHHhhC----CCCCcchhhHHHHHH
Q 039940 192 PVLPALAQLIHLD----DEEVLRNVCWTLSNLSD----GTNDKIQAVIEAGVCGPLVELLG----HPSPSVLIPALRTVG 259 (449)
Q Consensus 192 ~~l~~l~~ll~~~----~~~~~~~~~~~l~~l~~----~~~~~~~~~~~~~~~~~L~~ll~----~~~~~v~~~a~~~l~ 259 (449)
..+..+..++.++ .+.++..++-+++.+.. ..+.....+. ..+++.+...+. ..+.+.+...+.+|+
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 5566677777643 46677777777776653 2211001111 235555555443 345556778899999
Q ss_pred HhhcCChhhHHHHHhcCCHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhH
Q 039940 260 NIVTGDDFQTQCVINHGAVPYLLALLI--NNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDI 335 (449)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v 335 (449)
|+.... .++.+...+. ...+..+|..|+++|..++...+.. +-+.++.++.+. ++++
T Consensus 472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence 987532 2334444443 1125679999999999997655443 344566666554 7889
Q ss_pred HHHHHHHHHHh
Q 039940 336 KKEAAWAISNA 346 (449)
Q Consensus 336 ~~~a~~aL~~l 346 (449)
|..|..+|...
T Consensus 533 RiaA~~~lm~t 543 (574)
T smart00638 533 RMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHhc
Confidence 98887776654
No 274
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.32 E-value=0.88 Score=35.38 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=61.8
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS 95 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 95 (449)
.+++..+.+.|++.++.++..|+..|-.+....+......+...+++..|++++.....+.++..++..+...+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 467788888899999999999999998887765556667777889999999999865447899999988887765
No 275
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.31 E-value=12 Score=34.61 Aligned_cols=147 Identities=12% Similarity=0.075 Sum_probs=88.6
Q ss_pred HHHhCcHHHHHHhhCCCCC-cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhc----cC-CchhHHHHHHHHHHH
Q 039940 230 VIEAGVCGPLVELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLI----NN-HKKSIKKESCWTVSN 303 (449)
Q Consensus 230 ~~~~~~~~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~----~~-~~~~v~~~a~~~l~n 303 (449)
+.+.+-.+.+-.-+...+. .-|..|+..+..++.........++ ...+-.++. ++ .+..-+..|+..++.
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 5666666777766665443 4566788888888865433322222 223333332 22 266778889999999
Q ss_pred HhcCCHH------------HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhc
Q 039940 304 ITAGNRK------------QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL 371 (449)
Q Consensus 304 l~~~~~~------------~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll 371 (449)
++..... ....+....++|.|. --.+..+-++..|++.+..+-..-+++... ++++.++..|
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~-----~~~~~l~~~L 355 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLL-----QIFPLLVNHL 355 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHH-----HHHHHHHHHT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHh
Confidence 9863211 234555556777765 222346789999999999887765544332 2789999999
Q ss_pred cCCCHHHHHHHHHHH
Q 039940 372 LCADPEIVTVCLKGL 386 (449)
Q Consensus 372 ~~~~~~~~~~~~~~l 386 (449)
.+++.-+...|..++
T Consensus 356 ~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 356 QSSSYVVHTYAAIAI 370 (370)
T ss_dssp TSS-HHHHHHHHHHH
T ss_pred CCCCcchhhhhhhhC
Confidence 999988877766553
No 276
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.28 E-value=0.97 Score=37.34 Aligned_cols=138 Identities=7% Similarity=0.121 Sum_probs=89.7
Q ss_pred hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhcc----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHH
Q 039940 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLIN----NHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNL 327 (449)
Q Consensus 253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~l 327 (449)
.|+..+..++++ ++.+..++++.+--.+...|.. .....+|..+.++++.+.. ++++.+..+....++|..+++
T Consensus 119 naL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 119 NALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 455555555554 6666666666554444555432 2245688899999999987 677888888889999999999
Q ss_pred hhcCchhHHHHHHHHHHHhhccCCHHHHHHHHH--------cCChHHHHh-hccCCCHHHHHHHHHHHHHHHHhh
Q 039940 328 LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR--------EGCIKPLCD-LLLCADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 328 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~~~~~~L~~-ll~~~~~~~~~~~~~~l~~l~~~~ 393 (449)
+..++.--+..|+..+..+... ....+++.+ ..++..+.. +.+.....+.+.++.+.-+++...
T Consensus 198 me~gSElSktvaifI~qkil~d--DvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p 270 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGD--DVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP 270 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH
Confidence 9999888888888888888764 333333332 112222222 233455667777777766655443
No 277
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.25 E-value=1.6 Score=34.02 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=59.0
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC-CCHHHHHHHHHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH-GNNGIREKAVTIL 441 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~~~a~~~i 441 (449)
++..|..-+.+.++.++..++.+|..+++.+.. .|...+-..+.++.|..+... .++.|++++..++
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~------------~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li 105 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGK------------RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH------------HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 566777778889999999999999999998876 367777778888999998666 7889999999999
Q ss_pred HHh
Q 039940 442 ETY 444 (449)
Q Consensus 442 ~~~ 444 (449)
+..
T Consensus 106 ~~W 108 (144)
T cd03568 106 KQW 108 (144)
T ss_pred HHH
Confidence 874
No 278
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.78 E-value=4.1 Score=40.95 Aligned_cols=164 Identities=12% Similarity=0.135 Sum_probs=90.2
Q ss_pred chHHHHHHhhcC----CCHHHHHHHHHHHHHcccCChhH---------HHHHHHhCcHHHHHHhhC----CCCCcchhhH
Q 039940 192 PVLPALAQLIHL----DDEEVLRNVCWTLSNLSDGTNDK---------IQAVIEAGVCGPLVELLG----HPSPSVLIPA 254 (449)
Q Consensus 192 ~~l~~l~~ll~~----~~~~~~~~~~~~l~~l~~~~~~~---------~~~~~~~~~~~~L~~ll~----~~~~~v~~~a 254 (449)
..+..+..++.. +++.++..++.+++.+....-.. ........+++.+...+. ..+.+-+..+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 445555555553 35677777777777765321000 011112245566665554 3555677888
Q ss_pred HHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-
Q 039940 255 LRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN--HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA- 331 (449)
Q Consensus 255 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~- 331 (449)
+.+|+|+... ..++.+...+... ....+|..|++++..++...++. +.+.++.++.+.
T Consensus 511 LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~ 571 (618)
T PF01347_consen 511 LKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTT 571 (618)
T ss_dssp HHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TT
T ss_pred HHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCC
Confidence 9999998642 2455666666543 26789999999999997766653 345666777654
Q ss_pred -chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHH
Q 039940 332 -EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVCLKG 385 (449)
Q Consensus 332 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~ 385 (449)
++++|..|...|... ..+.. .+..|...+.. ++.++...+...
T Consensus 572 e~~EvRiaA~~~lm~~--~P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 572 EDPEVRIAAYLILMRC--NPSPS---------VLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp S-HHHHHHHHHHHHHT-----HH---------HHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhc--CCCHH---------HHHHHHHHHhhCchHHHHHHHHHh
Confidence 778888887666553 11222 24445555543 456665554443
No 279
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.64 E-value=8.6 Score=37.34 Aligned_cols=220 Identities=13% Similarity=0.032 Sum_probs=119.3
Q ss_pred CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC--C---------CCCcchhhHHHHHHHhhcCChhhHHH
Q 039940 203 LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG--H---------PSPSVLIPALRTVGNIVTGDDFQTQC 271 (449)
Q Consensus 203 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~--~---------~~~~v~~~a~~~l~~l~~~~~~~~~~ 271 (449)
+++.++...+-..|..+...-+ +..++..|+.+.. . .++.++...+..|..-.. ..
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------Aa 314 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------AA 314 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------HH
Confidence 3456666666666766654411 1234555555544 2 223344444444433210 00
Q ss_pred HHhcCCHHHHHHHhccC-CchhHHHHHHHHH---HHHhcC-CHHHH---HHHHHCCChHHHHH----HhhcCchhHHHHH
Q 039940 272 VINHGAVPYLLALLINN-HKKSIKKESCWTV---SNITAG-NRKQI---QAVIDAGLIVPLVN----LLQDAEFDIKKEA 339 (449)
Q Consensus 272 ~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l---~nl~~~-~~~~~---~~l~~~~~~~~L~~----ll~~~~~~v~~~a 339 (449)
-.....+..+...+.+. .+.+++..+...+ .....+ .+..+ ...+..++.|.+-. --...+...|..+
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 01122333333344332 1456677776666 555443 33322 23334555555510 1123478899999
Q ss_pred HHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchH
Q 039940 340 AWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGF 419 (449)
Q Consensus 340 ~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (449)
..+|+.++.....-..+ +-+++..|.+-+..++++++...-++|..+.......... ..... .....
T Consensus 395 Ye~lG~L~~~~p~l~~~---d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~-------~~~~~---~~~~~ 461 (501)
T PF13001_consen 395 YETLGLLAKRAPSLFSK---DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD-------EDEQK---RLLLE 461 (501)
T ss_pred HHHHHHHHccCcccccc---cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc-------hhHHH---HHHHH
Confidence 99999999974322111 2456888888888889999999999998888776553210 00000 00011
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940 420 KKIEDLKSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 420 ~~l~~l~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
..+.....+.....+..|.+-.+++|+.+
T Consensus 462 ~l~~~~~~~~~~~~R~~avk~an~~fpf~ 490 (501)
T PF13001_consen 462 LLLLSYIQSEVRSCRYAAVKYANACFPFS 490 (501)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHhCCcc
Confidence 12233344556678999999999999875
No 280
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.52 E-value=2.3 Score=32.88 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=57.2
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC------CCHHHHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH------GNNGIREK 436 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~i~~~ 436 (449)
++..|..-+.++++.+...|+.+|..+++.+.. .|...+-..+.++.+..+... ..+.|+++
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~------------~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k 106 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE------------RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK 106 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 567777888899999999999999999998765 367777778888888888642 56889999
Q ss_pred HHHHHHHh
Q 039940 437 AVTILETY 444 (449)
Q Consensus 437 a~~~i~~~ 444 (449)
+..+++..
T Consensus 107 il~li~~W 114 (139)
T cd03567 107 IIELLYSW 114 (139)
T ss_pred HHHHHHHH
Confidence 99998763
No 281
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.06 E-value=1.4 Score=37.03 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCChhhhHHHHhCCC-------hHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCch-hhhHhhcCC
Q 039940 81 RLQFEAAWVLTNIASGTSVNTKVLIDHGA-------VPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGC-RNLVLHEEA 151 (449)
Q Consensus 81 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-------i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~ 151 (449)
.=|..|+++|++++- .+.+.+.+...+- +..|..++. .++.-.|+.|+..|.+++..+... +....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 457899999999998 5667777666553 345555554 477999999999999999877554 455567888
Q ss_pred HHHHHHHHcc
Q 039940 152 LIPLLAQLNE 161 (449)
Q Consensus 152 i~~l~~~l~~ 161 (449)
+..|+.++.+
T Consensus 218 i~~Li~FiE~ 227 (257)
T PF12031_consen 218 ISHLIAFIED 227 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999943
No 282
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.84 E-value=15 Score=37.30 Aligned_cols=317 Identities=13% Similarity=0.087 Sum_probs=157.2
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHh------C
Q 039940 34 DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLID------H 107 (449)
Q Consensus 34 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~ 107 (449)
+|..+...+...|+.++.+ ......++..|++..|+.. +...+...-...||..+.. .....+.+.. .
T Consensus 365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~v---pr~s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~ 438 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAV---PRVSETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH 438 (1516)
T ss_pred ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcC---CCchhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence 4555667788888888765 5667778888888776655 3322333344456666665 3333333221 2
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc-------cc-----------cHHHHH
Q 039940 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE-------HA-----------RLSMLR 169 (449)
Q Consensus 108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-------~~-----------~~~~~~ 169 (449)
.++..-+.+|......-+.++...++.-... -..-+.+-....++.|+.++.. ++ +.+...
T Consensus 439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~f-rail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 439 QVVKLAIELLDCSQDQARKNSALFFAAAFVF-RAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF 517 (1516)
T ss_pred HHHHHHHHHHhcchhhccchHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence 3455556666654333333333222211000 0111222234456666665521 11 112333
Q ss_pred HHHHHHHHhhcCC-----CC-CChhhhhchHHHHHHhhcCCC------HHHHHHHHHHHHHcccCCh-------hHHHHH
Q 039940 170 IGTWTLSNLCKGK-----PQ-PPFDQVRPVLPALAQLIHLDD------EEVLRNVCWTLSNLSDGTN-------DKIQAV 230 (449)
Q Consensus 170 ~a~~~l~~l~~~~-----~~-~~~~~~~~~l~~l~~ll~~~~------~~~~~~~~~~l~~l~~~~~-------~~~~~~ 230 (449)
..|.++....... .. .+.....+..+..++-+...+ .+..+.++|-+-.+....+ ...+.+
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 4455554322221 00 111111222222222222111 1223333333333222222 224456
Q ss_pred HHhCcHHHHHHhhCCC-C-------CcchhhHHHHHHHhhcCChhhHHHHHh--------cCCHHHHHHHhcc---CCch
Q 039940 231 IEAGVCGPLVELLGHP-S-------PSVLIPALRTVGNIVTGDDFQTQCVIN--------HGAVPYLLALLIN---NHKK 291 (449)
Q Consensus 231 ~~~~~~~~L~~ll~~~-~-------~~v~~~a~~~l~~l~~~~~~~~~~~~~--------~~~l~~L~~ll~~---~~~~ 291 (449)
.+.+++..++.+...+ + .+....|+.+|..+..- +.....+.. ..++..++..-.- -.|+
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp 676 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP 676 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence 6677888888877642 2 23455666666655554 332222221 1233333332211 1278
Q ss_pred hHHHHHHHHHHHHhcCCHHH-----------------------------------HHHHHHCCChHHHHHHhhcCc----
Q 039940 292 SIKKESCWTVSNITAGNRKQ-----------------------------------IQAVIDAGLIVPLVNLLQDAE---- 332 (449)
Q Consensus 292 ~v~~~a~~~l~nl~~~~~~~-----------------------------------~~~l~~~~~~~~L~~ll~~~~---- 332 (449)
+++..|..+|.|+....|+. ...+...+++..|+++++...
T Consensus 677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~ 756 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT 756 (1516)
T ss_pred HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence 99999999999987643211 111224678999999998763
Q ss_pred -hhHHHHHHHHHHHhhccCCHHHHHHHHH
Q 039940 333 -FDIKKEAAWAISNATKAGTQEQIKYLVR 360 (449)
Q Consensus 333 -~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 360 (449)
..+|.-|+.+|.-++.+ +..++.+..
T Consensus 757 aD~IRalAc~~L~GLaR~--~tVrQIltK 783 (1516)
T KOG1832|consen 757 ADCIRALACRVLLGLARD--DTVRQILTK 783 (1516)
T ss_pred HHHHHHHHHHHHhccccC--cHHHHHHHh
Confidence 46899999999999985 455554443
No 283
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=89.71 E-value=3.8 Score=36.34 Aligned_cols=75 Identities=24% Similarity=0.311 Sum_probs=55.7
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhh----cc--------CCCHHHHHHHHHHHH
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL----LL--------CADPEIVTVCLKGLE 387 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l----l~--------~~~~~~~~~~~~~l~ 387 (449)
++|.++.++++.++++|..++.+|..+........-..+.+.|..+.+.+. +. .+...+...+..++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 789999999999999999999999999987544442335566765544443 33 344567888899999
Q ss_pred HHHHhhh
Q 039940 388 NILKVGE 394 (449)
Q Consensus 388 ~l~~~~~ 394 (449)
.++....
T Consensus 200 ~L~~~~~ 206 (282)
T PF10521_consen 200 SLLKTQE 206 (282)
T ss_pred HHHHhhc
Confidence 8887643
No 284
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.67 E-value=1.5 Score=33.69 Aligned_cols=75 Identities=11% Similarity=-0.006 Sum_probs=59.5
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHH-HHHHHHHHHHHhcC
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPR-LQFEAAWVLTNIAS 95 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~-~~~~a~~~L~~l~~ 95 (449)
.+++..+.+.|++.++.+++.|+..|-.+....+......+...+++..|..++.+..... ++..++..+...+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4567778888889999999999999988887655566677778889999999988865434 88888888777664
No 285
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=89.47 E-value=8 Score=37.55 Aligned_cols=159 Identities=12% Similarity=0.002 Sum_probs=91.7
Q ss_pred CcHHHHHHhhCCC--CCcchhhHHHHH---HHhhcCChh-hHH---HHHhcCCHHHHHH----HhccCCchhHHHHHHHH
Q 039940 234 GVCGPLVELLGHP--SPSVLIPALRTV---GNIVTGDDF-QTQ---CVINHGAVPYLLA----LLINNHKKSIKKESCWT 300 (449)
Q Consensus 234 ~~~~~L~~ll~~~--~~~v~~~a~~~l---~~l~~~~~~-~~~---~~~~~~~l~~L~~----ll~~~~~~~v~~~a~~~ 300 (449)
..+..+...+.++ +..++..++..+ .....+... ... ..+..++.+.+-. --... +...|..+..+
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~-~~~lR~~aYe~ 397 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSE-DIELRSLAYET 397 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcc-cHHHHHHHHHH
Confidence 3344445555555 567777777777 555444332 222 2234455554410 01122 67899999999
Q ss_pred HHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHH-HHHHHcCChHHHHh-hccCCCHHH
Q 039940 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQI-KYLVREGCIKPLCD-LLLCADPEI 378 (449)
Q Consensus 301 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~~~~~~L~~-ll~~~~~~~ 378 (449)
|+.++...+.... -+.+++..|.+.|..+.++++...-.||..++.+-....- ........+..+.. ...+....+
T Consensus 398 lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 475 (501)
T PF13001_consen 398 LGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSC 475 (501)
T ss_pred HHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHH
Confidence 9999987765431 1345788888989888999999999999988875211000 00001111222222 222345567
Q ss_pred HHHHHHHHHHHHHhhhh
Q 039940 379 VTVCLKGLENILKVGEA 395 (449)
Q Consensus 379 ~~~~~~~l~~l~~~~~~ 395 (449)
|..|++....++.+.+-
T Consensus 476 R~~avk~an~~fpf~d~ 492 (501)
T PF13001_consen 476 RYAAVKYANACFPFSDV 492 (501)
T ss_pred HHHHHHHHHHhCCccch
Confidence 88888777777765543
No 286
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.37 E-value=36 Score=36.95 Aligned_cols=148 Identities=15% Similarity=0.127 Sum_probs=92.6
Q ss_pred CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 039940 234 GVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQ 313 (449)
Q Consensus 234 ~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~ 313 (449)
+++|.|..-|...+..+|..|...+|.+....+.... -.....+...+.-+.+. +..||.++.....++...+++...
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 7889999889999999999999999999876443221 01223455556666677 888999999999888876655432
Q ss_pred HHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940 314 AVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 314 ~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 392 (449)
.. +....+... +.|++++.....++..+.. ....-.++.. ++..+-..+.+..+.||..|+..|..+.+.
T Consensus 337 ~~---~~~~~l~~~--~~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AS---TILLALRER--DLDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HH---HHHHHHHhh--cCChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 22 122222222 2244444322221111111 1122222233 666667777888899999999999999884
No 287
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.21 E-value=2.5 Score=32.46 Aligned_cols=75 Identities=15% Similarity=0.038 Sum_probs=58.9
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHhcC
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE--DYPRLQFEAAWVLTNIAS 95 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~~a~~~L~~l~~ 95 (449)
-+++..|.+.|+++++.++..|+..|-.+....+......+.....+..|+.++... ..+.++..++..+...+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456777888888999999999999998887765444555666668888899998763 337899999998888775
No 288
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.01 E-value=28 Score=35.23 Aligned_cols=299 Identities=11% Similarity=0.085 Sum_probs=138.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHH-hhCC--CChHHHHHHHHHHHHHhcCCCchh
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVK-LLAS--PSDDVREQAVWALGNIVAHSPGCR 143 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~--~~~~~~~~a~~~L~~l~~~~~~~~ 143 (449)
++..-+-|...|...=+..|+..++.++...+.....++... +..++. +..+ .++.-...++..+..++......+
T Consensus 363 leYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~-v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~ 441 (960)
T KOG1992|consen 363 LEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE-VQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAK 441 (960)
T ss_pred HHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHhccCCCccccccchhhhhhHHHHhhcchhh
Confidence 333333344444223345667777777775544333333322 233332 3333 345566667777777764432222
Q ss_pred hhHhhcCCHHHHHHH--------Hcc---cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHH
Q 039940 144 NLVLHEEALIPLLAQ--------LNE---HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNV 212 (449)
Q Consensus 144 ~~~~~~~~i~~l~~~--------l~~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~ 212 (449)
.-+...+-+-.+... |.. ...+-++..+. ..+............-..+|.++..+..+..-+-.++
T Consensus 442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aI---Ky~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYA 518 (960)
T KOG1992|consen 442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAI---KYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYA 518 (960)
T ss_pred cceeeccccccHHHHHHHHhhHHhccCccccccchhhccc---ceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHH
Confidence 222111111111111 211 11111222221 2222221223334445788999999999888888899
Q ss_pred HHHHHHcccCChh-HHHHHHHh-CcH-------HHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHH
Q 039940 213 CWTLSNLSDGTND-KIQAVIEA-GVC-------GPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLA 283 (449)
Q Consensus 213 ~~~l~~l~~~~~~-~~~~~~~~-~~~-------~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ 283 (449)
..++-.+..-.+. ... +... .+. ..++..++.+...--+..++++..+..-.++...... ...+..|.+
T Consensus 519 A~aiEkil~vre~~~~~-if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~-~~~l~~Lte 596 (960)
T KOG1992|consen 519 AIAIEKLLTVRENSNAK-IFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHA-PELLRQLTE 596 (960)
T ss_pred HHHHHhccccccCcccc-ccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhh-hHHHHHHHH
Confidence 8888776533322 111 1111 222 2222333334333334455555555444333321111 112333333
Q ss_pred ----HhccCCchhHH---HHHHHHHHHHh-cCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCC---H
Q 039940 284 ----LLINNHKKSIK---KESCWTVSNIT-AGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGT---Q 352 (449)
Q Consensus 284 ----ll~~~~~~~v~---~~a~~~l~nl~-~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---~ 352 (449)
..+++.+|..- -++..++-+.+ ..++.... .++...+|.+-..+..+=.+.--.+...++-++.+.. +
T Consensus 597 iv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs-~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip 675 (960)
T KOG1992|consen 597 IVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVS-SLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIP 675 (960)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 33444344322 22333333333 34444443 3344677888788877656666666666666666532 2
Q ss_pred HHH---------HHHHH-cCChHHHHhhcc
Q 039940 353 EQI---------KYLVR-EGCIKPLCDLLL 372 (449)
Q Consensus 353 ~~~---------~~l~~-~~~~~~L~~ll~ 372 (449)
+.. ..+++ .|-++.++++++
T Consensus 676 ~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 676 DSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred hhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 222 22333 577888877764
No 289
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=88.97 E-value=22 Score=33.92 Aligned_cols=145 Identities=14% Similarity=0.173 Sum_probs=78.5
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHH
Q 039940 290 KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLC 368 (449)
Q Consensus 290 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~ 368 (449)
+..|+..++.++..+-. -|+.. .-+|..|++-++.+ +..+|..++.+|..+...+. .++.=-...+++.|+
T Consensus 289 ~~~V~Aa~A~A~v~l~~-lP~KL-----nPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc 360 (441)
T PF12054_consen 289 DVRVLAAAASALVALGG-LPKKL-----NPIIRPLMDSIKREENELLQQRSAESLARLIQLCV--DRKPCPNDKIVKNLC 360 (441)
T ss_pred HHHHHHHHHHHHHHhcc-CCCCc-----cHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHh
Confidence 34455555555555532 22211 23677888888776 88999999999999887532 111111123566677
Q ss_pred hhccC---CCHHHH--HHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 039940 369 DLLLC---ADPEIV--TVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILE 442 (449)
Q Consensus 369 ~ll~~---~~~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~ 442 (449)
.++-. ..|+.- ...-..+-.+.+..+..........+...-...+.+.|+...|..|..+-.+++.++.=++.+
T Consensus 361 ~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~Lw~ 439 (441)
T PF12054_consen 361 TFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQKEARIQRRGAELALEQLAKRFGSSLFEKLPKLWE 439 (441)
T ss_pred hhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhhhhhHHHhcCHHHHHHHHHHHHhHHHHHhhhHHHh
Confidence 76622 222221 111111222222111111000000123334567899999999999988888888877655544
No 290
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=88.86 E-value=22 Score=33.81 Aligned_cols=299 Identities=12% Similarity=0.100 Sum_probs=131.7
Q ss_pred HHHHHHhhcC---CCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCch
Q 039940 67 VPRFVEFLLR---EDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGC 142 (449)
Q Consensus 67 i~~L~~ll~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~ 142 (449)
+..|+.++.. ..++.+....++++..+-..-......+++. .+..+....++ .++..-.....+++.+.+.....
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~ 106 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA 106 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence 4555566654 2235566667777666555433443433322 33444444444 45666666666666665432211
Q ss_pred hhh---HhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 039940 143 RNL---VLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSN 218 (449)
Q Consensus 143 ~~~---~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~ 218 (449)
... -.+...++.+...| +..-.+..-++...++.+....+ ..........++.++.-.-=....-.-...+.|..
T Consensus 107 ~~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a 185 (435)
T PF03378_consen 107 DPEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQA 185 (435)
T ss_dssp GHH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHH
Confidence 111 22555677777777 44445677777777777776554 22222333444443321110011111222222322
Q ss_pred cccCChhHHHHHHHhC----cHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh-hHHHHHhcCCHHHHHHHhccCCchhH
Q 039940 219 LSDGTNDKIQAVIEAG----VCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF-QTQCVINHGAVPYLLALLINNHKKSI 293 (449)
Q Consensus 219 l~~~~~~~~~~~~~~~----~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v 293 (449)
.....+.. +...+ ++..+-+++.+... -..+...|..+...-+. ..+..+ ..++..++.-|+++...+.
T Consensus 186 ~i~k~~~~---i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf 259 (435)
T PF03378_consen 186 YIKKDPSF---IVANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKF 259 (435)
T ss_dssp HHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHH
T ss_pred HHHhCchh---hcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHH
Confidence 22222211 11112 22233344444332 23456666655544332 111111 1244455555554435566
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHH---CCChHHHHHHh-----hc-CchhHHHHHHHHHHHhhccCCHHHHH--HHHHc
Q 039940 294 KKESCWTVSNITA-GNRKQIQAVID---AGLIVPLVNLL-----QD-AEFDIKKEAAWAISNATKAGTQEQIK--YLVRE 361 (449)
Q Consensus 294 ~~~a~~~l~nl~~-~~~~~~~~l~~---~~~~~~L~~ll-----~~-~~~~v~~~a~~aL~~l~~~~~~~~~~--~l~~~ 361 (449)
.+.-+..++.++. .+++..-..++ .|++..++.-+ .. ..+.-|+.++-++.++...+..-..+ .++.
T Consensus 260 ~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~- 338 (435)
T PF03378_consen 260 VKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWP- 338 (435)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHH-
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHH-
Confidence 6665555665553 34444444443 45555555421 11 23455777777888877543211111 1111
Q ss_pred CChHHHHhhccCC
Q 039940 362 GCIKPLCDLLLCA 374 (449)
Q Consensus 362 ~~~~~L~~ll~~~ 374 (449)
..++.|+.+++.+
T Consensus 339 ~ll~~Ll~ll~~p 351 (435)
T PF03378_consen 339 PLLEALLKLLERP 351 (435)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC
Confidence 1455666666543
No 291
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.76 E-value=15 Score=39.21 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=65.3
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC----------------CCHHHHHHHHHH
Q 039940 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC----------------ADPEIVTVCLKG 385 (449)
Q Consensus 322 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~----------------~~~~~~~~~~~~ 385 (449)
..|.++..++.++||.-|+.++..+............++.-....++.+|++ ...+.....+.+
T Consensus 1000 ~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisg 1079 (1610)
T KOG1848|consen 1000 VHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISG 1079 (1610)
T ss_pred HHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHH
Confidence 3444555666789999999999988876433333333333334444445541 111233445566
Q ss_pred HHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 039940 386 LENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETY 444 (449)
Q Consensus 386 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~ 444 (449)
+..++...-+.-. ..|.|....+. .++-+..+..+.++++.-.|++-+++.
T Consensus 1080 Iaklf~e~fk~ll------nln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1080 IAKLFSENFKLLL------NLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHHHHHHHHHHHH------hcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHH
Confidence 6666643322211 13334443322 356677778888999998888887763
No 292
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=88.73 E-value=6.1 Score=45.18 Aligned_cols=265 Identities=15% Similarity=0.205 Sum_probs=139.6
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHH----HHH--HcCCHHHHHHh-hcCCCCHHHHHHHHHHHHHhcCCChhhhHHHH
Q 039940 33 SDDNSMQLEAATQFRRLLSIERSLPID----EVI--QAGIVPRFVEF-LLREDYPRLQFEAAWVLTNIASGTSVNTKVLI 105 (449)
Q Consensus 33 s~~~~~~~~a~~~L~~l~~~~~~~~~~----~~~--~~~~i~~L~~l-l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 105 (449)
.++.+++..+...++.+.... .... ... -..++..+..+ +.+++ +.++......+. ........
T Consensus 492 ~~~~e~r~~~~l~~~~ll~~~--~~~~~~~~~~~~~v~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~la 562 (2341)
T KOG0891|consen 492 ADDSEIRKNAALTCCELLKYD--IICSQTSPHALQVVKEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQLA 562 (2341)
T ss_pred cccHHHHHHHHHHHHHHHhhh--hhhhcccchHHHHHHHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhhc
Confidence 466777777766666554432 1100 000 11112222222 22334 455444433332 22333345
Q ss_pred hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC
Q 039940 106 DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP 185 (449)
Q Consensus 106 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~ 185 (449)
+.+.+..+...+..+.-.+++.+...+++++..+|.+.-..+....+. ..+-+..+....+......-+..+....+..
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~-~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLE-LLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHH-HhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 556677777788888899999999999999887763321111111111 1111111111111111111111111111111
Q ss_pred ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhcC
Q 039940 186 PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPALRTVGNIVTG 264 (449)
Q Consensus 186 ~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~l~~l~~~ 264 (449)
........+..++..+...+..+...++.++..|+...........+ ..++.+.+.+.+ .+..-+..+.++++++...
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 12223455566777777778888888999999998765533433344 455555555554 4556778899999999865
Q ss_pred ChhhHHHHH-hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 039940 265 DDFQTQCVI-NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN 308 (449)
Q Consensus 265 ~~~~~~~~~-~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~ 308 (449)
......... ...++..+...+.......++.++...++++....
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence 332222111 23456666777766656778888888888775433
No 293
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=88.25 E-value=8 Score=34.31 Aligned_cols=139 Identities=14% Similarity=0.205 Sum_probs=79.3
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh-HHHHhCCChHHHHHhh----C--------CCChHHHHHHHHH
Q 039940 65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT-KVLIDHGAVPIFVKLL----A--------SPSDDVREQAVWA 131 (449)
Q Consensus 65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~~l----~--------~~~~~~~~~a~~~ 131 (449)
=++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.+-+.+ . .++..+...+.-+
T Consensus 119 liiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 35899999999998 8999999999999998443332 3366667665555443 3 2445677777777
Q ss_pred HHHHhcC---CC-chhhhHhhcCCHHHHHHHHcccc---cHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC
Q 039940 132 LGNIVAH---SP-GCRNLVLHEEALIPLLAQLNEHA---RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD 204 (449)
Q Consensus 132 L~~l~~~---~~-~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~ 204 (449)
+..++.. .+ ..+......-.-..++.-+.... .+.++...+..+..+...-..........+++.+...+.++
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 7777532 11 11111111111111333332222 36666666666666655543333444456666666655543
No 294
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=87.88 E-value=11 Score=29.25 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=54.5
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH-hcCCCHH---HHHHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL-KSHGNNG---IREKAV 438 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~---i~~~a~ 438 (449)
++..|..-+.+.++.++..|+.+|..+++.+.. .|...+-...+++.|..+ ....... |++++.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~------------~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l 110 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP------------RFHREVASKEFLDELVKLIKSKKTDPETPVKEKIL 110 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH------------HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence 566777788889999999999999999998754 366777677788888887 4444444 899999
Q ss_pred HHHHH
Q 039940 439 TILET 443 (449)
Q Consensus 439 ~~i~~ 443 (449)
.++..
T Consensus 111 ~ll~~ 115 (140)
T PF00790_consen 111 ELLQE 115 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 295
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.83 E-value=31 Score=34.36 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=93.4
Q ss_pred ChHHHHHhhCC----CChHHHHHHHHHHHHHhc----CCCchhhhHhhcCCHHHHHHHHcc---cccHHHHHHHHHHHHH
Q 039940 109 AVPIFVKLLAS----PSDDVREQAVWALGNIVA----HSPGCRNLVLHEEALIPLLAQLNE---HARLSMLRIGTWTLSN 177 (449)
Q Consensus 109 ~i~~L~~~l~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~l~~ 177 (449)
.+..+..++.+ .+..++..|+-+++++.. ..+.+...+ ....++.+...+.. ..+.+-+..++.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 45666677664 346677877777777753 222111111 12345555555532 2345555667777777
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhc-C--CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchh
Q 039940 178 LCKGKPQPPFDQVRPVLPALAQLIH-L--DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLI 252 (449)
Q Consensus 178 l~~~~~~~~~~~~~~~l~~l~~ll~-~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~ 252 (449)
+-.. ..++.+...+. . ....+|..|++++..++...+...+ +.++.+..+ .++++|.
T Consensus 473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHH
Confidence 6554 45556666665 2 2467899999999988765554332 455555554 4567888
Q ss_pred hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHH
Q 039940 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESC 298 (449)
Q Consensus 253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 298 (449)
.|+..+... ++.. ..+..+...+....+.+|+....
T Consensus 535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHhH
Confidence 877766332 1221 24556666776664666655443
No 296
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.53 E-value=54 Score=36.79 Aligned_cols=113 Identities=15% Similarity=0.071 Sum_probs=75.8
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC-CCCChh
Q 039940 110 VPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPFD 188 (449)
Q Consensus 110 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~ 188 (449)
+..++..+..+++..+-.+..+++.++...+.. ..+ ....+.++..+....|+-.|..-..++..+-++. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-chH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 456666677788999988999999988654322 111 2345567777756666666666666677766665 223334
Q ss_pred hhhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChh
Q 039940 189 QVRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTND 225 (449)
Q Consensus 189 ~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~ 225 (449)
.....+..+..+..++ ++.++..++.++..+......
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p 992 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGP 992 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCc
Confidence 4456677777777655 569999999999988765443
No 297
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=87.31 E-value=8.1 Score=30.03 Aligned_cols=75 Identities=11% Similarity=0.015 Sum_probs=59.2
Q ss_pred ChHHHHHHhhc-CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHH-HHhhccC---CCHHHHHHHHHHHHHHHHhhh
Q 039940 320 LIVPLVNLLQD-AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP-LCDLLLC---ADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 320 ~~~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~-L~~ll~~---~~~~~~~~~~~~l~~l~~~~~ 394 (449)
.+..|..-+.. .++.++..|+..|-.++.+++..+...+...+++.. |..++.. .+..|+.+++..+........
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 34455555654 588899999999999999998888888888889987 8999863 245789999999988876553
No 298
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=86.97 E-value=14 Score=30.07 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=54.5
Q ss_pred CCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 276 GAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 276 ~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
..++.+++-|... +...+--|...+..+... ..+.+-.++. .++..+.+.|+..++++...++.+|..++..
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 4677788888777 555677777777777654 5554444443 5888889999999999999999999999664
No 299
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.89 E-value=16 Score=30.05 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=89.1
Q ss_pred CHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHH
Q 039940 151 ALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAV 230 (449)
Q Consensus 151 ~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 230 (449)
.++.+++.. .+++..++..|+.++..+.+.+-..+ ..++|.++.+..++++.++..|...+..+.+..+.....-
T Consensus 9 yl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELC-LSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 355666666 67889999999999999888762111 3679999999999999999999999999987766554433
Q ss_pred HHhCcHHHHHHhh---CCCCC-cc---hhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-------chhHHHH
Q 039940 231 IEAGVCGPLVELL---GHPSP-SV---LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-------KKSIKKE 296 (449)
Q Consensus 231 ~~~~~~~~L~~ll---~~~~~-~v---~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~~v~~~ 296 (449)
...|+ ..-..+- ..+.. .. ....+..+..+...+...+..+ +..+++.+.... .+.-...
T Consensus 84 ~~~gi-~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~ 157 (187)
T PF12830_consen 84 YSEGI-RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDF 157 (187)
T ss_pred HHHHH-HHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHH
Confidence 33332 3222221 11111 11 3444555555666545444433 445555554321 2333455
Q ss_pred HHHHHHHHhc
Q 039940 297 SCWTVSNITA 306 (449)
Q Consensus 297 a~~~l~nl~~ 306 (449)
..++.-|++.
T Consensus 158 ~~Fla~nLA~ 167 (187)
T PF12830_consen 158 LLFLAENLAT 167 (187)
T ss_pred HHHHHHHHhc
Confidence 6666666664
No 300
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=86.47 E-value=28 Score=32.40 Aligned_cols=306 Identities=13% Similarity=0.096 Sum_probs=150.2
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCC-CcHHHHHHcCCHHHHHHhhc----C------CCCHHHHHHHHHHHHHhcCCChhh
Q 039940 32 WSDDNSMQLEAATQFRRLLSIERS-LPIDEVIQAGIVPRFVEFLL----R------EDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 32 ~s~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~i~~L~~ll~----~------~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
.+.+.+-+..|...|.+....... +....+. .-++.+++.++ + +.+.++..+|+++++.+.. +++.
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~--~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i 79 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQ--DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEI 79 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHH
Confidence 344555666666666655544321 1122221 11344444332 1 2136888999999999987 4554
Q ss_pred hHHHHhCC---ChHHHHHhhCC--CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc---c-cccHHHHHHH
Q 039940 101 TKVLIDHG---AVPIFVKLLAS--PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN---E-HARLSMLRIG 171 (449)
Q Consensus 101 ~~~~~~~~---~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~-~~~~~~~~~a 171 (449)
...+-+.- ++...+..+.+ .+..+....+|+|..=- +...++....+..++..+. + -.+..+....
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-----f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er 154 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-----FSPKIMTSDRVERLLAALHNIKNRFPSKSIISER 154 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----CCCcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence 44443321 34555556644 44677777777777432 2122333444444554442 2 3456778888
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccC--C-hhHHHH---HHHh----C-----cH
Q 039940 172 TWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDG--T-NDKIQA---VIEA----G-----VC 236 (449)
Q Consensus 172 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~--~-~~~~~~---~~~~----~-----~~ 236 (449)
+.++.++....|.........=+|.++..+-+....++..+...+..+... . ...... ..+. + +.
T Consensus 155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 234 (372)
T PF12231_consen 155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC 234 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence 888888888765444333344566666666666777777665555444321 1 111111 1111 1 23
Q ss_pred HHHHHhhCCCCCcchhhHHHH-HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc---CCHHHH
Q 039940 237 GPLVELLGHPSPSVLIPALRT-VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA---GNRKQI 312 (449)
Q Consensus 237 ~~L~~ll~~~~~~v~~~a~~~-l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~---~~~~~~ 312 (449)
+.+..++.+.+......-+|. +..+.. +.....--.-...+...-..++++ ++.+|..|..+=..+.. .++...
T Consensus 235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~-~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~ 312 (372)
T PF12231_consen 235 ERLKEMIKSKDEYKLAMQIWSVVILLLG-SSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTS 312 (372)
T ss_pred HHHHHHHhCcCCcchHHHHHHHHHHHhC-CchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 335555555333322222332 222222 121100011123455555566777 88999888665554442 121111
Q ss_pred HHHHHCCChHHHHHHhhcC-ch----hHHHHHHHHHHHhhc
Q 039940 313 QAVIDAGLIVPLVNLLQDA-EF----DIKKEAAWAISNATK 348 (449)
Q Consensus 313 ~~l~~~~~~~~L~~ll~~~-~~----~v~~~a~~aL~~l~~ 348 (449)
...++. +..++...+... .. +++..+...++++..
T Consensus 313 ~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 313 PKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 111111 223344444433 23 566666666666654
No 301
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.44 E-value=39 Score=34.11 Aligned_cols=274 Identities=11% Similarity=0.079 Sum_probs=139.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHh--CCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCch-
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLID--HGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGC- 142 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~- 142 (449)
-..++.++++.++.-++..+++.+.-...+-.-..+.+.. ......+.+++.. +.-+.+...+..++.+.....+.
T Consensus 528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I 607 (978)
T KOG1993|consen 528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHI 607 (978)
T ss_pred HHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 4456777888764667788888888777643222222221 2334444455543 44556666777777776433221
Q ss_pred hhhHhhcCCHHHHHHHHc-cc-ccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC---HHHHHHHHHHHH
Q 039940 143 RNLVLHEEALIPLLAQLN-EH-ARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDD---EEVLRNVCWTLS 217 (449)
Q Consensus 143 ~~~~~~~~~i~~l~~~l~-~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~---~~~~~~~~~~l~ 217 (449)
+... +.+-.++..+- .+ +.+-++...+.++.|+...-.........-.+|.+-...+.+. .-+.+.++..-.
T Consensus 608 ~P~~---~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~ 684 (978)
T KOG1993|consen 608 APYA---STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWL 684 (978)
T ss_pred hHHH---HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHH
Confidence 1111 12222333332 23 3344566677888898877654555554555555555444322 223333332222
Q ss_pred HcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH-HhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940 218 NLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG-NIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKE 296 (449)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~-~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 296 (449)
....+.+.....+. +++|.+...+....+.++ .++.++. .+.-.+.... .-...|+.+.+..++.+- ..+-...
T Consensus 685 ~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~dv-r~egl~a 759 (978)
T KOG1993|consen 685 TTLMNSQKLTPELL--LLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDDV-RNEGLQA 759 (978)
T ss_pred HHHhcccccCHHHH--HHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHh-hHHHHHH
Confidence 22222221111111 456777777655443333 3333332 2222222211 122346777777777655 4445555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhcc
Q 039940 297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKA 349 (449)
Q Consensus 297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~ 349 (449)
.+.++.++...++ ........++++.+..-+-.+ .|-+...-+..++.+...
T Consensus 760 vLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~ 813 (978)
T KOG1993|consen 760 VLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR 813 (978)
T ss_pred HHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc
Confidence 5666666655554 444555667777777665332 455655566666666555
No 302
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=86.33 E-value=13 Score=33.71 Aligned_cols=78 Identities=8% Similarity=0.001 Sum_probs=66.3
Q ss_pred CChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhh
Q 039940 319 GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLL-CADPEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 319 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~ 396 (449)
.++..+.+-+...++.|...|+..+..++..+...++..+...++...|..++. +..+.++++.-..+....+...+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 367788888999999999999999999999988888888888899999999998 678888888888887777655443
No 303
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.32 E-value=2.2 Score=35.88 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHc-------CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHH-HhC
Q 039940 36 NSMQLEAATQFRRLLSIERSLPIDEVIQA-------GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVL-IDH 107 (449)
Q Consensus 36 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-------~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~ 107 (449)
.+-|..|+.+|++++-. +.+.+.+... .++..|++++....++-.++-|+-.|.+++..++.....+ .+.
T Consensus 138 lSPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~ 215 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQK 215 (257)
T ss_pred CCHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 35688899999999765 3343333332 3456677777777668899999999999999776665444 456
Q ss_pred CChHHHHHhhCCCC
Q 039940 108 GAVPIFVKLLASPS 121 (449)
Q Consensus 108 ~~i~~L~~~l~~~~ 121 (449)
+.|..|+.++...+
T Consensus 216 ~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 216 PCISHLIAFIEDAE 229 (257)
T ss_pred chHHHHHHHHHHHH
Confidence 89999999997543
No 304
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=86.13 E-value=13 Score=33.11 Aligned_cols=79 Identities=15% Similarity=0.298 Sum_probs=64.1
Q ss_pred CCChHHHHHHhhcC--chhHHHHHHHHHHHhhccCCH-HHHHHHHHcCChHHHHhhccCC---CHHHHHHHHHHHHHHHH
Q 039940 318 AGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAGTQ-EQIKYLVREGCIKPLCDLLLCA---DPEIVTVCLKGLENILK 391 (449)
Q Consensus 318 ~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~-~~~~~l~~~~~~~~L~~ll~~~---~~~~~~~~~~~l~~l~~ 391 (449)
.|.+..+++.+..+ +...|-.-+.|+..+..+.+. ....++.+.|+++.+++.+-++ +..+.+.+.++|.-+++
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 56788888888665 678899999999999998877 5666778899999999876544 44689999999999998
Q ss_pred hhhhh
Q 039940 392 VGEAK 396 (449)
Q Consensus 392 ~~~~~ 396 (449)
.....
T Consensus 174 ~n~~~ 178 (303)
T PF12463_consen 174 FNRDA 178 (303)
T ss_pred CCHHH
Confidence 87654
No 305
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=85.65 E-value=24 Score=30.85 Aligned_cols=178 Identities=19% Similarity=0.174 Sum_probs=99.2
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCC-------CchhhhHhhcCCHHHHHHHHccccc----HHHHHHHHHHHHHh
Q 039940 110 VPIFVKLLASPSDDVREQAVWALGNIVAHS-------PGCRNLVLHEEALIPLLAQLNEHAR----LSMLRIGTWTLSNL 178 (449)
Q Consensus 110 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~~----~~~~~~a~~~l~~l 178 (449)
-+.+++-+.+ ....+.++..|..++... .+.|-.+.-...+|.++..+ ++++ ......++..|..+
T Consensus 66 q~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~-d~~~~i~~~~~~~~~A~~La~~ 142 (262)
T PF14225_consen 66 QPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAF-DDPNPIQPDQECIEIAEALAQV 142 (262)
T ss_pred HHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHh-cccccccccHHHHHHHHHHHHH
Confidence 3444444443 334566777787776421 11233333334566666666 3333 24455667888888
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 179 CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 179 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
|........ ..++....+--..+..+....++..+..-.. ++ .+...+..++.+|.++.+.++..++.+|
T Consensus 143 a~~~~~~~L---a~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL 212 (262)
T PF14225_consen 143 AEAQGLPNL---ARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD-----HEFQILTFLLGLLENGPPWLRRKTLQIL 212 (262)
T ss_pred HHhCCCccH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 865322111 1111111111112335555566665554321 11 1224567888999888889999999999
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
..+....+-... ...+++..+.+++.++ .-.+|..++-++..
T Consensus 213 ~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 213 KVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 988766443322 4456888999999876 45566666655543
No 306
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=85.63 E-value=1.9 Score=38.00 Aligned_cols=135 Identities=12% Similarity=0.007 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHcccCChhHHHHHHHh-C--cHHHHHHhhCCC---CCcchhhHHHHHHHhhcCChhhH-HHHHhcC
Q 039940 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEA-G--VCGPLVELLGHP---SPSVLIPALRTVGNIVTGDDFQT-QCVINHG 276 (449)
Q Consensus 204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~--~~~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~ 276 (449)
..+..+.-++++++|+..+...... +.+. + +++.+....... +..++..+...+.|++....... ..-....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQL-LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHH-HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHH-HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4677788899999999887665433 3332 2 222333322222 56788888888888864311111 0001112
Q ss_pred CHHHHHH-HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc-CchhHHHHH
Q 039940 277 AVPYLLA-LLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD-AEFDIKKEA 339 (449)
Q Consensus 277 ~l~~L~~-ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~v~~~a 339 (449)
++..+.+ +.....++++...++-++|++....+.........|+-..+...-.. .++.+++.+
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 4556666 33332388999999999999997665544333223344333333322 244554443
No 307
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=84.53 E-value=33 Score=31.62 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=87.4
Q ss_pred cHHHHHHhhCCCCC-cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhc--c-------CCchhHHHHHHHHHHHH
Q 039940 235 VCGPLVELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLI--N-------NHKKSIKKESCWTVSNI 304 (449)
Q Consensus 235 ~~~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~-------~~~~~v~~~a~~~l~nl 304 (449)
+-..++..+..+.+ ..+...+..+..+++..+. .+.+.....++.|+.+.+ . ..+..+..++..+|+|+
T Consensus 46 L~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~-L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNl 124 (532)
T KOG4464|consen 46 LGERIFEVLENGEPLTHRVVCLETVRILSRDKDG-LEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNL 124 (532)
T ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHHhccccc-cccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHH
Confidence 34455555555543 3344555556555554221 111221222333333321 1 11567899999999999
Q ss_pred hcCCHHHHHHHHHCCChHHHHHHhhcC-----chhHHHHHHHHHHHhhccCCHHHHHHHH-HcCChHHHHhhccCC----
Q 039940 305 TAGNRKQIQAVIDAGLIVPLVNLLQDA-----EFDIKKEAAWAISNATKAGTQEQIKYLV-REGCIKPLCDLLLCA---- 374 (449)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~~~~L~~ll~~~---- 374 (449)
..+++.......+......+.+.+... ...+...-+..|.-+... ..+.+..++ +-++++.+.+.+.++
T Consensus 125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltal-e~~~Rsql~~~l~Gl~~lt~~led~lgid 203 (532)
T KOG4464|consen 125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTAL-ETDHRSQLIAELLGLELLTNWLEDKLGID 203 (532)
T ss_pred HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHh-hHHHHHHHHHHhcccHHHHHHhhccccCC
Confidence 999988888888777766666655332 112333333333333332 345555544 568888888887542
Q ss_pred --------CHHHHHHHHHHHHHHHHhhh
Q 039940 375 --------DPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 375 --------~~~~~~~~~~~l~~l~~~~~ 394 (449)
+++-...++++|..++...-
T Consensus 204 se~n~~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 204 SEINVPPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHhheee
Confidence 22455677788877776543
No 308
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=84.32 E-value=30 Score=31.69 Aligned_cols=217 Identities=19% Similarity=0.144 Sum_probs=108.0
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc
Q 039940 62 IQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG 141 (449)
Q Consensus 62 ~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 141 (449)
+...++..+..++..+.++......+.++..-+..- ..-+...++..+.+-+.+..+.+|..-+..++......+.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 334456677777776554666666776666554311 0111224567777777777777888877778777651111
Q ss_pred hhhhHhhcCCHHHHHHHHcc---cccHHHH---HHHHHHHHHhhcCCCCCChhhhhchHH--------H-H--HHhhcC-
Q 039940 142 CRNLVLHEEALIPLLAQLNE---HARLSML---RIGTWTLSNLCKGKPQPPFDQVRPVLP--------A-L--AQLIHL- 203 (449)
Q Consensus 142 ~~~~~~~~~~i~~l~~~l~~---~~~~~~~---~~a~~~l~~l~~~~~~~~~~~~~~~l~--------~-l--~~ll~~- 203 (449)
....-.-...++.+++.+.+ ++-+..+ ..++.++..++.... ........... . + -++...
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~~l~~~~kps~ll~~kvyskl 173 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKL-DKIDSKNISFWSLALDPKPSFLLSEKVYSKL 173 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccc-hhhhhhhhhhhhhccCCCcchhcCHHHHhcc
Confidence 11111123456666666632 1111111 112222222111110 00000000000 0 0 011222
Q ss_pred CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHH
Q 039940 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYL 281 (449)
Q Consensus 204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L 281 (449)
.+++-....++++..+..........-.....-..++.++-++ .+++|..|+..+..+...++.. +...++..+
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l 249 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL 249 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence 3445555666666666544332221111224567788888777 7899999999999988776653 223345555
Q ss_pred HHHhcc
Q 039940 282 LALLIN 287 (449)
Q Consensus 282 ~~ll~~ 287 (449)
-..+..
T Consensus 250 ~~~l~~ 255 (339)
T PF12074_consen 250 WKWLSS 255 (339)
T ss_pred HHHHHh
Confidence 555543
No 309
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.87 E-value=48 Score=32.88 Aligned_cols=293 Identities=14% Similarity=0.141 Sum_probs=152.7
Q ss_pred hhcHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 21 LEILPAMVAGVW-SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 21 ~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
...++.+.+.|. +.|+..|..|-.+|..+... .+. +..-.-++..++.+--+..|..+|.++..+..
T Consensus 4 LaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t- 71 (1082)
T KOG1410|consen 4 LAQLESLCKDLYESTDPTARHRAEKALAELSES--PEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKT- 71 (1082)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-
Confidence 345566666664 78899999999999888532 222 33333445555557778888888888877332
Q ss_pred hhHHHHhCCChHHHHHhhCCCCh----HHHHHHHHHHHHHhcCCCc--hhhhHhhcCCHHHHHHHHcccccHHHHHHHHH
Q 039940 100 NTKVLIDHGAVPIFVKLLASPSD----DVREQAVWALGNIVAHSPG--CRNLVLHEEALIPLLAQLNEHARLSMLRIGTW 173 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~~~~~----~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 173 (449)
.........+-..++.++....+ -+....+..++.+...... .++...-.+.+..+.+.+ +..+.+--..++.
T Consensus 72 ~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~ 150 (1082)
T KOG1410|consen 72 PLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQ 150 (1082)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHH
Confidence 11111111344677777766443 3444455556666532211 111111123455566666 4444444445555
Q ss_pred HHHHhhcCCC----CCChhh------------hhchHHHHHHhhcCC------C---HHHHHHHH----HHHHH-----c
Q 039940 174 TLSNLCKGKP----QPPFDQ------------VRPVLPALAQLIHLD------D---EEVLRNVC----WTLSN-----L 219 (449)
Q Consensus 174 ~l~~l~~~~~----~~~~~~------------~~~~l~~l~~ll~~~------~---~~~~~~~~----~~l~~-----l 219 (449)
++..+..+.. ...... .-.++..-..+++.. | ..+...++ .|+.. .
T Consensus 151 iLsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss 230 (1082)
T KOG1410|consen 151 ILSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSS 230 (1082)
T ss_pred HHHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccc
Confidence 6665554331 111100 012222222333211 1 12222222 22211 1
Q ss_pred ccCC-h---------hHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC-----ChhhHHHHHhcCCHHHHHHH
Q 039940 220 SDGT-N---------DKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG-----DDFQTQCVINHGAVPYLLAL 284 (449)
Q Consensus 220 ~~~~-~---------~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~-----~~~~~~~~~~~~~l~~L~~l 284 (449)
.... + .-...+.+...++.+.++..+-.++.-..|+.|+..+++. ++..+...+ ...++-...+
T Consensus 231 ~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl-~~Lv~Gvk~i 309 (1082)
T KOG1410|consen 231 TDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYL-QHLVEGVKRI 309 (1082)
T ss_pred cccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHH
Confidence 1111 0 1123455667788999999988899999999999999753 222222222 1244445555
Q ss_pred hccCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh
Q 039940 285 LINNH---KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ 329 (449)
Q Consensus 285 l~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~ 329 (449)
+..+. |+.--.+-|+.|+.+-. ..+..+++.....+..++++.
T Consensus 310 l~np~~LsD~~nyHeFCRllaRlkt--NYQL~ELv~v~~Y~e~irLiA 355 (1082)
T KOG1410|consen 310 LENPQGLSDPANYHEFCRLLARLKT--NYQLGELVKVECYPEVIRLIA 355 (1082)
T ss_pred HhCCcCCCCcchHHHHHHHHHHHHh--hhhhHhhhccCCcHHHHHHHH
Confidence 55442 55566667777777732 345556666666666666654
No 310
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.80 E-value=82 Score=35.51 Aligned_cols=230 Identities=17% Similarity=0.104 Sum_probs=122.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhh
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNL 145 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~ 145 (449)
+..++..+..++ +..+..+..+++.++..-++. .++ .+....+++-+.+ .++-.|..-.-+++.+-++.......
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 445556666777 788888888888887622211 111 1224455555544 45555554455555554332222222
Q ss_pred HhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC---CHHHHH------------
Q 039940 146 VLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD---DEEVLR------------ 210 (449)
Q Consensus 146 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~------------ 210 (449)
-.....+..++.+..++.++.|+..++.++..+...............+..+..++.+. ..++..
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 22233455666666566778999999999998887763333555566677777766542 222222
Q ss_pred -HHHHHHHHcccCChh--HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhcc
Q 039940 211 -NVCWTLSNLSDGTND--KIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLIN 287 (449)
Q Consensus 211 -~~~~~l~~l~~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 287 (449)
....+++.=...+.. ... .+....+-...-++.++++.+...+..++-++-...+.... -.-++..+..++.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence 222233322222221 222 22222334444455667888899999999887654333211 11245556666655
Q ss_pred CCchhHHHHHHHHHHHHh
Q 039940 288 NHKKSIKKESCWTVSNIT 305 (449)
Q Consensus 288 ~~~~~v~~~a~~~l~nl~ 305 (449)
. ..-.|..+..++..+.
T Consensus 1110 ~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1110 S-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred h-hhhhhhhHHhhhhHHh
Confidence 5 3334444444444443
No 311
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=82.09 E-value=52 Score=38.34 Aligned_cols=253 Identities=15% Similarity=0.094 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC----Ch--hhhhchHHHHH
Q 039940 125 REQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP----PF--DQVRPVLPALA 198 (449)
Q Consensus 125 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~----~~--~~~~~~l~~l~ 198 (449)
...|.++++++-...... ...+...+.......+++++..+..++..+....... .. ......+..+.
T Consensus 461 ~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll 534 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSL------TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL 534 (2341)
T ss_pred HHHHHHHHhhhhhhhhhH------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence 445677777764322111 1122333333336678888888877766666554331 11 11233344444
Q ss_pred Hhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCC
Q 039940 199 QLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGA 277 (449)
Q Consensus 199 ~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 277 (449)
.+-. .+++.++......+. ........+.+.+..+...+.+..-.++..+...+++++..++...-..+....
T Consensus 535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~ 608 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL 608 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence 3333 346666666655554 112233455566667777777888889999999999999887754443333334
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHH
Q 039940 278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKY 357 (449)
Q Consensus 278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 357 (449)
+..+-++-.+. -..+....+.-+.-+....+..+...++ ..+..++..+.+.+..+...+..++..|+..+..+ .+.
T Consensus 609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~-~~~ 685 (2341)
T KOG0891|consen 609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEE-MVK 685 (2341)
T ss_pred HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccch-hhh
Confidence 44444444444 3333333433333333344443333333 45566777777778888899999999998875422 222
Q ss_pred HHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhh
Q 039940 358 LVREGCIKPLCDLLLC-ADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 358 l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~ 393 (449)
..+ ..+..+.+.+.. .+..-+..+++.+.++....
T Consensus 686 ~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 686 WVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred ccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 222 344444444443 33344566777777666543
No 312
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=82.06 E-value=16 Score=33.05 Aligned_cols=186 Identities=11% Similarity=0.121 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHH-hhCC---CCCcchhh-HHHHHHHhh----cCChhhHHHHHhcCCH
Q 039940 208 VLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE-LLGH---PSPSVLIP-ALRTVGNIV----TGDDFQTQCVINHGAV 278 (449)
Q Consensus 208 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~-ll~~---~~~~v~~~-a~~~l~~l~----~~~~~~~~~~~~~~~l 278 (449)
+++..+..+.......++. +. +...+++.++. .+.+ ..+..|.. ++.+++.++ ....+....+.+ .++
T Consensus 43 iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHH
Confidence 4556666665555444432 22 33356676666 3322 33333333 333333333 322333444443 366
Q ss_pred HHHHHHhccCC--chhHHHHHHHHHHHHhcCCHHHHHHHHH---CCChHHHHHHhhcCchhHHHHHHHHHHHhhccC---
Q 039940 279 PYLLALLINNH--KKSIKKESCWTVSNITAGNRKQIQAVID---AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG--- 350 (449)
Q Consensus 279 ~~L~~ll~~~~--~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--- 350 (449)
...+.++..+. -|+.|..-...+..+...+....-.+-. ..++..++..+++.+.++...++.++..+....
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 77777776532 4788888777887776643222211100 124556677778889999999999998887753
Q ss_pred CHHHHHHHHHcCChHHH---HhhccCC-CHHHHHHHHHHHHHHHHhhhhh
Q 039940 351 TQEQIKYLVREGCIKPL---CDLLLCA-DPEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 351 ~~~~~~~l~~~~~~~~L---~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~ 396 (449)
+++....+.+.-.+..+ ...+.+. +...-..-..+|..++...+..
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~ 249 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESG 249 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcc
Confidence 34666666665444433 3334333 3444555557888888775543
No 313
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=81.63 E-value=57 Score=32.14 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940 33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS 95 (449)
Q Consensus 33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 95 (449)
+.++++....+..|..++. --+...+...++++.+..-+.+. ++.+..++.||..++.
T Consensus 204 ~~~~SLi~ATLesllrfl~---wiPl~yIfeTnIieLv~~~f~s~--pd~r~~tl~CLtEi~~ 261 (1053)
T COG5101 204 SRDESLIEATLESLLRFLE---WIPLDYIFETNIIELVLEHFNSM--PDTRVATLSCLTEIVD 261 (1053)
T ss_pred cCChHHHHHHHHHHHHHHh---hCchhHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHh
Confidence 5567777777777777753 46677788888888877766554 3567777788877765
No 314
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=81.59 E-value=16 Score=26.24 Aligned_cols=92 Identities=14% Similarity=0.210 Sum_probs=62.2
Q ss_pred HHHHHHHHHHH-HHhccCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHH
Q 039940 37 SMQLEAATQFR-RLLSIERSLPIDEVI-QAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFV 114 (449)
Q Consensus 37 ~~~~~a~~~L~-~l~~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 114 (449)
++|..|+..+. ++..+ -.....+. ....+..|++....+. .-.+..++..+..+.. .+.....+.+-|+...|.
T Consensus 2 EIR~RAL~~I~~Kl~~~--Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~ 77 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG--LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLS 77 (98)
T ss_pred hHHHHHHHHHHHHHHhc--cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHH
Confidence 45666654433 33221 22223333 4567788888888888 4578889999999888 677888888889999877
Q ss_pred HhhCCCChHHHHHHHHHH
Q 039940 115 KLLASPSDDVREQAVWAL 132 (449)
Q Consensus 115 ~~l~~~~~~~~~~a~~~L 132 (449)
++-...++..+...-.++
T Consensus 78 klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 78 KLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 777666676666555444
No 315
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=81.58 E-value=15 Score=28.70 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=85.1
Q ss_pred CChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhc--CCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHH
Q 039940 96 GTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVA--HSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGT 172 (449)
Q Consensus 96 ~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~ 172 (449)
++++.-+.+.+.+.+..+.+++.. ....++.+.+..+.-+.. .++..--.+.+.+.+..++..--+-.++++...-.
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI 93 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI 93 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence 346677888888999999999987 567788888887777653 33444456678888888887665667889999988
Q ss_pred HHHHHhhcCCCCCChhh----hhchHH---HHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940 173 WTLSNLCKGKPQPPFDQ----VRPVLP---ALAQLIHLDDEEVLRNVCWTLSNLS 220 (449)
Q Consensus 173 ~~l~~l~~~~~~~~~~~----~~~~l~---~l~~ll~~~~~~~~~~~~~~l~~l~ 220 (449)
..|..++..-....... ..+-.| .-+++..++|.-+|.++-..+.++.
T Consensus 94 sfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 94 SFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 88888886542221111 122333 4455666788888877766655543
No 316
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=81.51 E-value=19 Score=26.68 Aligned_cols=70 Identities=6% Similarity=-0.011 Sum_probs=53.8
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhh----c--cCCCHHHHHHHHHHHHHH
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL----L--LCADPEIVTVCLKGLENI 389 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l----l--~~~~~~~~~~~~~~l~~l 389 (449)
++..|..-+.+.++.++..|+..|-.++.+|++.+...+....++..++.. . ...+..++.++..++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 556677777888999999999999999999998888888777666666543 1 123667888888877654
No 317
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=81.28 E-value=11 Score=28.06 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=51.6
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH------hcCCCHHHHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL------KSHGNNGIREK 436 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~i~~~ 436 (449)
++..|..-+.+.++.+...++.+|..+++.+... |...+.....+..+..+ -...+..|+++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence 4666777778889999999999999999988653 56666666555555332 12347889999
Q ss_pred HHHHHHHh
Q 039940 437 AVTILETY 444 (449)
Q Consensus 437 a~~~i~~~ 444 (449)
+..+++..
T Consensus 106 ~~~l~~~w 113 (115)
T cd00197 106 AIELVQLW 113 (115)
T ss_pred HHHHHHHH
Confidence 99998864
No 318
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=80.90 E-value=36 Score=29.40 Aligned_cols=129 Identities=15% Similarity=0.184 Sum_probs=65.5
Q ss_pred HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHH
Q 039940 232 EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWTVSNITAGNRK 310 (449)
Q Consensus 232 ~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~ 310 (449)
+...++.++++++.++.. .-..++-.....-...-..+-.|-++.|..++.++. +.-+|..|+.++..++...+.
T Consensus 71 e~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 346778899998766541 111112211111111111122456677777887663 566899999999999986666
Q ss_pred HHHHHHHCCChHHHHHH-hhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHH
Q 039940 311 QIQAVIDAGLIVPLVNL-LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP 366 (449)
Q Consensus 311 ~~~~l~~~~~~~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~ 366 (449)
.+..+++ .+..++.. +...+..+.-.-...++.+--..-...++...+.|.++.
T Consensus 147 ~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 147 SREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred CHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 5666555 34444443 333333322222333333322111223455566677655
No 319
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=80.79 E-value=18 Score=34.78 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=72.3
Q ss_pred cCCHHHHHHHhccCCchhHHHHHHHHHHHHh--cCCHHHHHHHHHCCChHHHHHHhhcC-chhHHHHHHHHHHHhhccC-
Q 039940 275 HGAVPYLLALLINNHKKSIKKESCWTVSNIT--AGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKKEAAWAISNATKAG- 350 (449)
Q Consensus 275 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~--~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~- 350 (449)
.++++.+++.+..+ .+..--...++ .= ......+..+.+.++++.|++.|... +.+++.+|+..|+.++...
T Consensus 20 ~~~v~~llkHI~~~---~ImDlLLklIs-~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHIDTP---AIMDLLLKLIS-TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcCCc---HHHHHHHHHHc-cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 45666666666544 22222222222 00 12223444555789999999999744 7889999998888876642
Q ss_pred -----------CHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhh
Q 039940 351 -----------TQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 351 -----------~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
.....+.+.....+..|++.+-. ........++.++..+++....
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknns 152 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNNS 152 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhccc
Confidence 13345666667778877775542 3355667788888888866533
No 320
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=80.72 E-value=47 Score=30.68 Aligned_cols=50 Identities=22% Similarity=0.127 Sum_probs=38.7
Q ss_pred ChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940 97 TSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146 (449)
Q Consensus 97 ~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 146 (449)
++......++..++-.|+.+..++|++-|+..-.+|.++.+.-...+..+
T Consensus 166 d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~fi 215 (457)
T KOG2085|consen 166 DPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFI 215 (457)
T ss_pred CHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 35566777888999999999999999999998888988865444444433
No 321
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=80.55 E-value=39 Score=34.25 Aligned_cols=81 Identities=15% Similarity=0.120 Sum_probs=62.4
Q ss_pred CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHH
Q 039940 247 SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVN 326 (449)
Q Consensus 247 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ 326 (449)
.+..|..++..|+.+....+...-.+.+..+++.|+++|....+..+...|+.+|..+.-.-+......+. .++..+.+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~-~Lf~If~R 159 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLP-DLFNIFGR 159 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHH-HHHHHHHH
Confidence 45678999999999999888888889999999999999987767888888999999988755543333322 35555555
Q ss_pred Hh
Q 039940 327 LL 328 (449)
Q Consensus 327 ll 328 (449)
++
T Consensus 160 l~ 161 (668)
T PF04388_consen 160 LL 161 (668)
T ss_pred HH
Confidence 55
No 322
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.90 E-value=18 Score=37.63 Aligned_cols=278 Identities=15% Similarity=0.132 Sum_probs=145.4
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC---CChhhhHHHHhCC
Q 039940 32 WSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS---GTSVNTKVLIDHG 108 (449)
Q Consensus 32 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~ 108 (449)
++++.+.+...+..+.++.... .++-...-+.--+|.++.-+..-. ..+|...+.+|-.... +-|+ ++
T Consensus 477 kaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPe-qE------ 547 (2799)
T KOG1788|consen 477 KAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPE-QE------ 547 (2799)
T ss_pred HhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcH-HH------
Confidence 4677888888888777775432 444454555666888887777655 4555555554432221 1111 11
Q ss_pred ChHHHHHhhCCC-ChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc---cHHHHHHHHHHHHHhhcCCC-
Q 039940 109 AVPIFVKLLASP-SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA---RLSMLRIGTWTLSNLCKGKP- 183 (449)
Q Consensus 109 ~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~l~~l~~~~~- 183 (449)
+-.|+-+|+.+ +..+....+.....+...+..+++.+.+-|.+..+...+.++. .++ +... ........+
T Consensus 548 -LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd-qysg---vsehydrnps 622 (2799)
T KOG1788|consen 548 -LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD-QYSG---VSEHYDRNPS 622 (2799)
T ss_pred -HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc-hhhh---HHHHhhcCCC
Confidence 33556666653 3455555666666777777788888888898888877764321 000 0000 011111111
Q ss_pred CCChhhh---hchHHHHHHhhcCC--CHHHH------HHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchh
Q 039940 184 QPPFDQV---RPVLPALAQLIHLD--DEEVL------RNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252 (449)
Q Consensus 184 ~~~~~~~---~~~l~~l~~ll~~~--~~~~~------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 252 (449)
...+... ...+-.--+++.+. ...+. ...-.||..+..++.++...+.+..++..++.++- +.+-|.
T Consensus 623 s~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfli--ndehRS 700 (2799)
T KOG1788|consen 623 SPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRS 700 (2799)
T ss_pred CchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHH
Confidence 1000000 11111111122221 11111 11234666677777777777778777787777773 344577
Q ss_pred hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-------c----hhHHHHHHHHHHHHhcCCHHHHHHHHHCCCh
Q 039940 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH-------K----KSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321 (449)
Q Consensus 253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~----~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~ 321 (449)
..++.+..+....+.+.. +.-+-.++..|+++. . ........+++..+...+......+-+.+++
T Consensus 701 slLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGF 776 (2799)
T KOG1788|consen 701 SLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGF 776 (2799)
T ss_pred HHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccH
Confidence 778888887766554221 112334555555421 1 2234445566666654443444455566666
Q ss_pred HHHHHHhh
Q 039940 322 VPLVNLLQ 329 (449)
Q Consensus 322 ~~L~~ll~ 329 (449)
..|...|.
T Consensus 777 slLlttLh 784 (2799)
T KOG1788|consen 777 SLLLTTLH 784 (2799)
T ss_pred HHHHHHHH
Confidence 66666553
No 323
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=78.81 E-value=34 Score=27.87 Aligned_cols=73 Identities=7% Similarity=-0.018 Sum_probs=52.8
Q ss_pred CcHHHHHHhhCCCCCcchhhHHHHHHHhhcC-ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 039940 234 GVCGPLVELLGHPSPSVLIPALRTVGNIVTG-DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN 308 (449)
Q Consensus 234 ~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~ 308 (449)
-.++.+++-|...+...+--|...+..+... ..+..-.++ ..++..+...|.+. ++++...+..+|..++..+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR-DPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 4677777777777777777777777777655 333322222 45777888888999 9999999999999996543
No 324
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=78.69 E-value=85 Score=32.40 Aligned_cols=113 Identities=13% Similarity=0.096 Sum_probs=70.2
Q ss_pred hHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccC
Q 039940 321 IVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRG 400 (449)
Q Consensus 321 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 400 (449)
...+...+..+++......+.++.++..-......+ ...-++.-..-....-..+.....++|.++....+.
T Consensus 443 W~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~----- 514 (727)
T PF12726_consen 443 WKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPS----- 514 (727)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHH-----
Confidence 345555566667777777777777776531100000 000111111111111123445556666666665433
Q ss_pred CCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940 401 STIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
.....+.+.+....+-.+.-|+++++++.|..++...|+.+
T Consensus 515 -------~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 515 -------HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred -------HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence 46788888899999999999999999999999999999865
No 325
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=78.36 E-value=51 Score=29.69 Aligned_cols=158 Identities=11% Similarity=0.083 Sum_probs=94.9
Q ss_pred chHHHHHHhhc-CC---CHHHHHHHHHHHHHcccCChhHHHHHHHh--------C---cHHHHHHhhCCC------CCcc
Q 039940 192 PVLPALAQLIH-LD---DEEVLRNVCWTLSNLSDGTNDKIQAVIEA--------G---VCGPLVELLGHP------SPSV 250 (449)
Q Consensus 192 ~~l~~l~~ll~-~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--------~---~~~~L~~ll~~~------~~~v 250 (449)
.++..|+..+- .+ .-++|..++.|+.....++++....+++. . ....++..|-+. ++--
T Consensus 34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~ 113 (312)
T PF04869_consen 34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR 113 (312)
T ss_dssp EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence 44444444433 22 46778889999988888777665555553 1 111234333322 2222
Q ss_pred hhhHHHHHHHhhcCChhhHHHHHhc------------CCHHHHHHHhcc----CCchhHHHHHHHHHHHHhcCCHHHHHH
Q 039940 251 LIPALRTVGNIVTGDDFQTQCVINH------------GAVPYLLALLIN----NHKKSIKKESCWTVSNITAGNRKQIQA 314 (449)
Q Consensus 251 ~~~a~~~l~~l~~~~~~~~~~~~~~------------~~l~~L~~ll~~----~~~~~v~~~a~~~l~nl~~~~~~~~~~ 314 (449)
..-|+.++..+..++++.++....- ..++.+..+|.. ..++.++..-...|+-...+++.....
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~ 193 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND 193 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 3457788888888887776655421 235566666643 336777777777888888899999999
Q ss_pred HHHC-CChHHHHHHhhc---CchhHHHHHHHHHHHhhcc
Q 039940 315 VIDA-GLIVPLVNLLQD---AEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 315 l~~~-~~~~~L~~ll~~---~~~~v~~~a~~aL~~l~~~ 349 (449)
++.. ..++.|+..... .+.-++--++..|+-+...
T Consensus 194 FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef 232 (312)
T PF04869_consen 194 FLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEF 232 (312)
T ss_dssp HHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHh
Confidence 9875 478999987533 2667777777777766664
No 326
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=78.25 E-value=53 Score=29.78 Aligned_cols=138 Identities=12% Similarity=0.096 Sum_probs=80.5
Q ss_pred chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH-hc---cC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCh
Q 039940 250 VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL-LI---NN----HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321 (449)
Q Consensus 250 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l-l~---~~----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~ 321 (449)
++.+.+..+.......++.. . +....++.+++. +. .. .++++-.-....+..+-....+....+.+ .++
T Consensus 43 iKkeIL~Li~t~i~~~~~~~-~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPE-E-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HH-H-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCHH-H-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHH
Confidence 45566666655554433221 1 333466666553 31 12 14455444444444443322233333443 466
Q ss_pred HHHHHHhhcC---chhHHHHHHHHHHHhhccC-------CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940 322 VPLVNLLQDA---EFDIKKEAAWAISNATKAG-------TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK 391 (449)
Q Consensus 322 ~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~ 391 (449)
...+.++..+ -|+.|..-...|..+...+ +++..+ .+++.+...+++.+.++...++.++..++.
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~-----~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK-----LVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 7777788664 4788877777777776642 122222 256777888899999999999999999998
Q ss_pred hhhh
Q 039940 392 VGEA 395 (449)
Q Consensus 392 ~~~~ 395 (449)
...+
T Consensus 195 ~~~~ 198 (319)
T PF08767_consen 195 NVSK 198 (319)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8877
No 327
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=77.97 E-value=24 Score=37.52 Aligned_cols=236 Identities=16% Similarity=0.164 Sum_probs=128.6
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHH--------HhhcCCCCHHHHHHHHHHHHH
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFV--------EFLLREDYPRLQFEAAWVLTN 92 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~--------~ll~~~~~~~~~~~a~~~L~~ 92 (449)
.+.++.|++.+-++.+++|..++.+++.+.............+.-.+..+. +...+.-..-+++.++++|..
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 456788899999999999999999999988765322222222221111111 111212124678888888888
Q ss_pred hcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh--hcCCHHHHHHHHcccccHHHHHH
Q 039940 93 IASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL--HEEALIPLLAQLNEHARLSMLRI 170 (449)
Q Consensus 93 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~l~~~l~~~~~~~~~~~ 170 (449)
+..+..+... ...++.+.+++..++.+++...+..+..... ..++.+. -..+++..+..+ .+.+..++..
T Consensus 156 ~l~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~ 227 (1549)
T KOG0392|consen 156 YLKHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSV 227 (1549)
T ss_pred HHHhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHH
Confidence 8763322211 1346788888887777777665555543322 1111221 112344445555 6677788888
Q ss_pred HHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCH--HHHHHHHHHHHHcccCChh---HHHHHHHhCcHHHHHHhhCC
Q 039940 171 GTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDE--EVLRNVCWTLSNLSDGTND---KIQAVIEAGVCGPLVELLGH 245 (449)
Q Consensus 171 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~--~~~~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~L~~ll~~ 245 (449)
|+..+.-.....+.........++..+...+..-+. .-.......+..++..... ..+.-.+.|+++.+...+.+
T Consensus 228 aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~ 307 (1549)
T KOG0392|consen 228 AAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRH 307 (1549)
T ss_pred HHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHH
Confidence 888777666554333333333444444433322111 1111122222333332210 01111223788888888888
Q ss_pred CCCcchhhHHHHHHHhhcC
Q 039940 246 PSPSVLIPALRTVGNIVTG 264 (449)
Q Consensus 246 ~~~~v~~~a~~~l~~l~~~ 264 (449)
.-..++..++..+..+...
T Consensus 308 ~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 308 TISSVRRAALETLAMLLEA 326 (1549)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7777888888888777654
No 328
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=77.15 E-value=20 Score=32.85 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=68.5
Q ss_pred hchHHHHHHhhcC------C-CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC----------CCCcchhh
Q 039940 191 RPVLPALAQLIHL------D-DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH----------PSPSVLIP 253 (449)
Q Consensus 191 ~~~l~~l~~ll~~------~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~----------~~~~v~~~ 253 (449)
..++|.++.++.. . +.......+..+..|..+..-..+..+. .+++.++.++-. +++.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 4667777777653 2 5666777888888888776644444444 377888877632 34679999
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCch-hHHHHHHHHHHHH
Q 039940 254 ALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKK-SIKKESCWTVSNI 304 (449)
Q Consensus 254 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-~v~~~a~~~l~nl 304 (449)
|+.+++.++......... +...+...+.+.+.++..+ ....-|...|..+
T Consensus 288 AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999999998653322111 2334555666666554233 2355565666555
No 329
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=76.82 E-value=20 Score=27.81 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=42.0
Q ss_pred chHHHHHHhhcCC----CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 192 PVLPALAQLIHLD----DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 192 ~~l~~l~~ll~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
.++..+.+.+... +.+....++.++......-+ ...+.+.++++.+..++ .+++++..|+.||
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 3444444444432 27788888899888776544 35567778899999988 4445577787765
No 330
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=76.69 E-value=7.3 Score=27.20 Aligned_cols=71 Identities=8% Similarity=0.122 Sum_probs=43.8
Q ss_pred hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHH
Q 039940 147 LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLS 217 (449)
Q Consensus 147 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~ 217 (449)
.+...+.++...+....+.++++..+.|+.++.......-...-..++..+-....+++..+...+..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 45567788888876778899999999999998876521111111223333333333456666666665543
No 331
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=75.78 E-value=68 Score=29.75 Aligned_cols=154 Identities=17% Similarity=0.097 Sum_probs=87.3
Q ss_pred HHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------CCCHHHHHHHHHHHHHcccCC
Q 039940 154 PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH----------LDDEEVLRNVCWTLSNLSDGT 223 (449)
Q Consensus 154 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~----------~~~~~~~~~~~~~l~~l~~~~ 223 (449)
.++..+.+..-...+..++.++.-|+++............++.|..+-. ..|..+...++.||.|+..++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 4455553333344555666666777776533333333444555554432 134678899999999999888
Q ss_pred hhHHHHHHHhCcHHHHHHhhCC----CCC-cchhhHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHHhccCC--------
Q 039940 224 NDKIQAVIEAGVCGPLVELLGH----PSP-SVLIPALRTVGNIVTGD-DFQTQCVINHGAVPYLLALLINNH-------- 289 (449)
Q Consensus 224 ~~~~~~~~~~~~~~~L~~ll~~----~~~-~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~-------- 289 (449)
....+...+......+...+.. ..+ .+...=++.|--+..-. +...+.+.+.++++.+..++.++.
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 7766666666665555555432 111 22222333333332222 334445568889999999986531
Q ss_pred ------chhHHHHHHHHHHHHhcC
Q 039940 290 ------KKSIKKESCWTVSNITAG 307 (449)
Q Consensus 290 ------~~~v~~~a~~~l~nl~~~ 307 (449)
+....-++..++.|++.+
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheeec
Confidence 112344567777777753
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.65 E-value=26 Score=35.79 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=99.1
Q ss_pred CcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHHHhcCCChhhhHHHHh--------CCChHHHHHhhCC-
Q 039940 56 LPIDEVIQAGIVPRFVEFLLRED-------YPRLQFEAAWVLTNIASGTSVNTKVLID--------HGAVPIFVKLLAS- 119 (449)
Q Consensus 56 ~~~~~~~~~~~i~~L~~ll~~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------~~~i~~L~~~l~~- 119 (449)
+....+.+.+++..++++...+. ..+....|+.+|+-+.. -|..+..+.. ..+|..++..-..
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 33455677788888888876432 13667778888877666 4555544432 1366666665532
Q ss_pred ---CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCH--HHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchH
Q 039940 120 ---PSDDVREQAVWALGNIVAHSPGCRNLVLHEEAL--IPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVL 194 (449)
Q Consensus 120 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l 194 (449)
.+++++..|+.++-|.....|..+......-.- ..--..+...+.....++.+.-.++-.+.. .++
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~n---------dGI 741 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGN---------DGI 741 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcC---------ccH
Confidence 379999999999999988877765543211000 000001112223344555555556655553 678
Q ss_pred HHHHHhhcCC-----CHHHHHHHHHHHHHcccCCh
Q 039940 195 PALAQLIHLD-----DEEVLRNVCWTLSNLSDGTN 224 (449)
Q Consensus 195 ~~l~~ll~~~-----~~~~~~~~~~~l~~l~~~~~ 224 (449)
..|+++++-. -..++.-++.+|..|++.+.
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence 8888888743 35688899999999998765
No 333
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=75.10 E-value=67 Score=29.39 Aligned_cols=212 Identities=11% Similarity=0.026 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC
Q 039940 125 REQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD 204 (449)
Q Consensus 125 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~ 204 (449)
|.....+|..+.. .+ ....++..+..++.+..++......+.++..=+... .......++..+.+-+...
T Consensus 4 r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred HHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCC
Confidence 3344555555543 21 233456677777777778877777776665443332 1122256778888888888
Q ss_pred CHHHHHHHHHHHHHcccCCh-hHHHHHHHhCcHHHHHHhhC----CCCCcch---hhHHHHHHHhhcCChhhHHH-----
Q 039940 205 DEEVLRNVCWTLSNLSDGTN-DKIQAVIEAGVCGPLVELLG----HPSPSVL---IPALRTVGNIVTGDDFQTQC----- 271 (449)
Q Consensus 205 ~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~ll~----~~~~~v~---~~a~~~l~~l~~~~~~~~~~----- 271 (449)
.+.+|+.-+.+++....... ........ .+++.|...++ ++-+... ..++.++..+..........
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 152 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISF 152 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhh
Confidence 88899988888888775111 01111222 46666666663 3333222 11222221111111111100
Q ss_pred --HH-hc--C--CHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHH
Q 039940 272 --VI-NH--G--AVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWA 342 (449)
Q Consensus 272 --~~-~~--~--~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~a 342 (449)
+. +. . .-+.+..-+ . +++-..-.+.++..+..+.+.....-.....-..++.++-+. ..++|+.|..+
T Consensus 153 ~~l~~~~kps~ll~~kvyskl--~-~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~ 229 (339)
T PF12074_consen 153 WSLALDPKPSFLLSEKVYSKL--A-SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSA 229 (339)
T ss_pred hhhccCCCcchhcCHHHHhcc--C-CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 00 00 0 001111111 1 222233344444444432221111110123455677777777 89999999999
Q ss_pred HHHhhccC
Q 039940 343 ISNATKAG 350 (449)
Q Consensus 343 L~~l~~~~ 350 (449)
+..+....
T Consensus 230 l~~l~~~~ 237 (339)
T PF12074_consen 230 LKKLYASN 237 (339)
T ss_pred HHHHHHhC
Confidence 99998873
No 334
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=74.71 E-value=16 Score=24.74 Aligned_cols=51 Identities=29% Similarity=0.427 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039940 379 VTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILET 443 (449)
Q Consensus 379 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~ 443 (449)
...++++|..|-...-. .+.+...+.-..+..|..|++++|...|..++..
T Consensus 18 ~~~~l~~L~~L~~~~~t--------------~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~ 68 (75)
T smart00509 18 VSRCLDILKKLKKLPIT--------------VDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKS 68 (75)
T ss_pred HHHHHHHHHHHhcCCCC--------------HHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 34566677666653322 6778888888889999999999999999999875
No 335
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.11 E-value=44 Score=30.77 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=83.0
Q ss_pred CHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHH
Q 039940 277 AVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIK 356 (449)
Q Consensus 277 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 356 (449)
-+.-|+..+++. +..+|..|...+..+....+.....- ...+++.+..+..+.+..+|......+-.+.....++...
T Consensus 59 tlkeLl~qlkHh-NakvRkdal~glkd~l~s~p~~l~~~-~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHH-NAKVRKDALNGLKDLLKSHPAELQSH-LYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCc-hHhhhHHHHHHHHHHHHhChHHHHHH-HHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 466678888888 99999999999998876544433211 2247788888888889999999999998877665555433
Q ss_pred HHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 357 YLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 357 ~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
.++. =.+..+...+..-.++++.-++..+..++...+.
T Consensus 137 p~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 137 PMVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred chHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 3222 1355566666777888888888888888877643
No 336
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=73.97 E-value=43 Score=31.88 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=57.2
Q ss_pred HHHHHHHHcc---cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHc----ccCC
Q 039940 152 LIPLLAQLNE---HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD-DEEVLRNVCWTLSNL----SDGT 223 (449)
Q Consensus 152 i~~l~~~l~~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l----~~~~ 223 (449)
+..|+..+.. .+++-+.+...+++..+-..-..............+....+++ |+..-.....+++.+ +..+
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~ 107 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEAD 107 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCC
Confidence 3444445533 2344455555555544433321111122233333333333343 565555555544444 3333
Q ss_pred hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 039940 224 NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD 266 (449)
Q Consensus 224 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 266 (449)
++... -++..++|.+..+|+.+-.+..-.+...++.+....+
T Consensus 108 ~~~v~-~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 108 PEAVS-QFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HH----HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33222 4555788999999988888888889998888865433
No 337
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=73.38 E-value=1.6e+02 Score=35.86 Aligned_cols=175 Identities=10% Similarity=0.024 Sum_probs=85.8
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh-----CCC----CCcchhhHHHHHHH
Q 039940 190 VRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL-----GHP----SPSVLIPALRTVGN 260 (449)
Q Consensus 190 ~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll-----~~~----~~~v~~~a~~~l~~ 260 (449)
..+.+..++.-+.+++..++..+..+|.+++........ .++..+.+++ ..+ ....+.--+.++..
T Consensus 1124 ~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~-----~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~f 1198 (3550)
T KOG0889|consen 1124 AMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVV-----KLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITF 1198 (3550)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHH-----HHHHHHHHHHhccccccccccCCHHHHhhhHHHHHH
Confidence 356777777778888889999999999988865421111 1222233322 111 11122222222222
Q ss_pred hhcCCh-------hhHHHHH---------hcCCHHHHHHHhccCC---chhHHHHHHHHHHHHhcCCHHHHH--HHHHCC
Q 039940 261 IVTGDD-------FQTQCVI---------NHGAVPYLLALLINNH---KKSIKKESCWTVSNITAGNRKQIQ--AVIDAG 319 (449)
Q Consensus 261 l~~~~~-------~~~~~~~---------~~~~l~~L~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~--~l~~~~ 319 (449)
+....+ ....... +..... +.+....+. ....|..+..+++......+-... .-...+
T Consensus 1199 C~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~k 1277 (3550)
T KOG0889|consen 1199 CLSLGPCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREK 1277 (3550)
T ss_pred HHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhH
Confidence 222211 1111000 000111 222221110 122355555555555442221111 112346
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhc
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL 371 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll 371 (449)
++..+...+....+++...+..++.+.... +...-+..++.+.=+.|..+-
T Consensus 1278 ii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~-~~~~~ke~lq~~lrplL~~l~ 1328 (3550)
T KOG0889|consen 1278 IIAVFFKSLYKRSSELIEVALEGLRKVLAQ-DVKLPKELLQSHLRPLLMNLS 1328 (3550)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhhc-cccccHHHHHhhHHHHHHhhh
Confidence 788888888888999999999999888765 333444444443334444443
No 338
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.95 E-value=23 Score=37.14 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=71.6
Q ss_pred hhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCccc
Q 039940 328 LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVN 407 (449)
Q Consensus 328 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 407 (449)
..+-++++|..++..|+-++..- -..|++...++++--.|++.+..||..++.+|..|+...+.. +...
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~y----P~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~-------~~L~ 364 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSY----PEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDK-------DKLE 364 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhc----cHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccc-------hHHH
Confidence 34458999999999999988752 355677788999999999999999999999999999884443 2344
Q ss_pred HHHHHHHhcchHHHHHHHh-cCCCHHHHHHHHHHHH
Q 039940 408 QYARLVEGAEGFKKIEDLK-SHGNNGIREKAVTILE 442 (449)
Q Consensus 408 ~~~~~~~~~~~~~~l~~l~-~~~~~~i~~~a~~~i~ 442 (449)
.|...| .+++..+. ..-+..|+.....++.
T Consensus 365 lFtsRF-----K~RIVeMadrd~~~~Vrav~L~~~~ 395 (1048)
T KOG2011|consen 365 LFTSRF-----KDRIVEMADRDRNVSVRAVGLVLCL 395 (1048)
T ss_pred HHHHHH-----HHHHHHHHhhhcchhHHHHHHHHHH
Confidence 566666 35566665 3445555555444443
No 339
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=72.91 E-value=54 Score=31.61 Aligned_cols=81 Identities=7% Similarity=0.117 Sum_probs=54.5
Q ss_pred HHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC-------------HHHHHHHHHCCChHHHHHHhhc-Cchh
Q 039940 269 TQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN-------------RKQIQAVIDAGLIVPLVNLLQD-AEFD 334 (449)
Q Consensus 269 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~-------------~~~~~~l~~~~~~~~L~~ll~~-~~~~ 334 (449)
.+.+.+.++++.|+.+|....+..++..|+.+|..+..-+ ......+.....+..|++.+-. ....
T Consensus 55 lewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s 134 (475)
T PF04499_consen 55 LEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGS 134 (475)
T ss_pred HHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcc
Confidence 3444568899999999986668889999999888886411 2344555566677777776653 3345
Q ss_pred HHHHHHHHHHHhhcc
Q 039940 335 IKKEAAWAISNATKA 349 (449)
Q Consensus 335 v~~~a~~aL~~l~~~ 349 (449)
....++..+..+...
T Consensus 135 ~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 135 SLVNGVSILIELIRK 149 (475)
T ss_pred hHHHHHHHHHHHHHh
Confidence 555566666666654
No 340
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=72.48 E-value=83 Score=29.28 Aligned_cols=221 Identities=12% Similarity=0.129 Sum_probs=122.2
Q ss_pred cHHHHHHHHHHHHHhhcCCC---CCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHH
Q 039940 164 RLSMLRIGTWTLSNLCKGKP---QPPFDQVRPVLPALAQLIHLD--DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGP 238 (449)
Q Consensus 164 ~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 238 (449)
+..+..+|+.+++.+..+.. .........++...+..+.++ +..+....+++|+.---... ++....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~-----~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK-----IMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc-----ccchhhHHH
Confidence 67888999999998887751 112222233555556666443 56777788888875332221 223333444
Q ss_pred HHHhhC-----CCCCcchhhHHHHHHHhhcCChhhHHHHHhc-CCHHHHHHHhccCCchhHHHHHHHHHHHHhc--CC-H
Q 039940 239 LVELLG-----HPSPSVLIPALRTVGNIVTGDDFQTQCVINH-GAVPYLLALLINNHKKSIKKESCWTVSNITA--GN-R 309 (449)
Q Consensus 239 L~~ll~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--~~-~ 309 (449)
++..+. -+...+..+.+.++.++....+... .-.. ..++.++..+-+. ...++..|...+..+.. +. .
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M--~~~~~~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~ 210 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQM--IKHADIWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNK 210 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhH
Confidence 444332 2455678888999999887655432 1122 3677777777776 67777776555544432 22 1
Q ss_pred HHH---HHHHHCCC---------hHHHHHHhhcCchhHHHHHHHHHHHhhccCC-HHHHHHHHHcCChHHHHhhccCCCH
Q 039940 310 KQI---QAVIDAGL---------IVPLVNLLQDAEFDIKKEAAWAISNATKAGT-QEQIKYLVREGCIKPLCDLLLCADP 376 (449)
Q Consensus 310 ~~~---~~l~~~~~---------~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~~~~L~~ll~~~~~ 376 (449)
... ....+... .+.|..++.+++......-+|...-...++. -+....+ +..+.....++++.|+
T Consensus 211 ~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~ 288 (372)
T PF12231_consen 211 ELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDP 288 (372)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCH
Confidence 111 11222222 2336666666332222222333333333322 1222221 2256677778899999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 039940 377 EIVTVCLKGLENILKVGE 394 (449)
Q Consensus 377 ~~~~~~~~~l~~l~~~~~ 394 (449)
.++..|..+=..++....
T Consensus 289 ~~k~~A~~aW~~liy~~~ 306 (372)
T PF12231_consen 289 QVKIQAFKAWRRLIYASN 306 (372)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999988888777443
No 341
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=71.97 E-value=1.3e+02 Score=31.27 Aligned_cols=195 Identities=13% Similarity=0.074 Sum_probs=97.4
Q ss_pred hchHHHHHHhhcCC-CHHHHHHHHHHHHHcccC------ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 039940 191 RPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDG------TNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263 (449)
Q Consensus 191 ~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~ 263 (449)
...++.++.++... +++++..+-..|..+++. +....+.+...+.+..|+..+-.+.. -....+..+..+.+
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~-s~s~lVs~i~vlI~ 267 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGT-SLSVLVSGIIVLIS 267 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCc-chhhHHHHHHHHHH
Confidence 67889999999854 577777777777776654 23345556666777777766544221 12222222222222
Q ss_pred CChhhHHHHHhcC-CHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCC---ChHHHHHHhhcCchhHHHHH
Q 039940 264 GDDFQTQCVINHG-AVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAG---LIVPLVNLLQDAEFDIKKEA 339 (449)
Q Consensus 264 ~~~~~~~~~~~~~-~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~---~~~~L~~ll~~~~~~v~~~a 339 (449)
.....+..+ +.. ....+..-.... ++.+....+.++..-. ....+.+.+.. .++.=...+...=...|...
T Consensus 268 ll~~~r~~~-~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki 342 (838)
T KOG2073|consen 268 LLNPRRDTV-ETNSTTTILSQPPSER-DPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERLKI 342 (838)
T ss_pred hcCcccccc-cccceeeeecCCcccc-CccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHHHH
Confidence 111111000 000 001111111222 3444444444443221 22222222211 22222223333334667778
Q ss_pred HHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHH--HHHHHHHHHHHHHH
Q 039940 340 AWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPE--IVTVCLKGLENILK 391 (449)
Q Consensus 340 ~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~--~~~~~~~~l~~l~~ 391 (449)
+..+..+....+....+.+...+.++.+.+++...... +-...-.++.....
T Consensus 343 ~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~ 396 (838)
T KOG2073|consen 343 VELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLS 396 (838)
T ss_pred HHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhh
Confidence 88888888877777778888888888888877654322 33334444443333
No 342
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.91 E-value=1.4e+02 Score=31.70 Aligned_cols=226 Identities=12% Similarity=0.025 Sum_probs=110.7
Q ss_pred hCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHH
Q 039940 117 LASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPA 196 (449)
Q Consensus 117 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 196 (449)
|+..+...+...+..+..+-...|++...+.+.-.++.++..+.. ....++...+..+-.-...-.... ....+ .
T Consensus 476 LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmeg-fPsslqvkiLkilEyAVtvvncvP---eqELl-S 550 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEG-FPSSLQVKILKILEYAVTVVNCVP---EQELL-S 550 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcC-CChHHHHHHHHHHHHHHhhhccCc---HHHHH-H
Confidence 456788888888888888888888777777677777777777633 223344433333332221110000 01222 2
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC---hhhHHHH
Q 039940 197 LAQLIHLD-DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGD---DFQTQCV 272 (449)
Q Consensus 197 l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~---~~~~~~~ 272 (449)
+.-+|+++ .......++.....+..-+....+.+.+.|+++.|...++...--.--.-...+......+ +..++.+
T Consensus 551 LCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~~l 630 (2799)
T KOG1788|consen 551 LCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQHL 630 (2799)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhhcc
Confidence 33344443 3444444555555555555556666777799888887775421100000000111111111 1111111
Q ss_pred HhcCCHHHHHHHhccCC-chhHHH------HHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHH
Q 039940 273 INHGAVPYLLALLINNH-KKSIKK------ESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN 345 (449)
Q Consensus 273 ~~~~~l~~L~~ll~~~~-~~~v~~------~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~ 345 (449)
-....+-.--+++.++. ...+.. ....+|..+...+.++...+.++.++..++..+- +.+-|...+..+..
T Consensus 631 d~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivsc 708 (2799)
T KOG1788|consen 631 DSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSC 708 (2799)
T ss_pred ccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHH
Confidence 11111111112222210 000111 1234555666666677777777777777766663 34556666677777
Q ss_pred hhcc
Q 039940 346 ATKA 349 (449)
Q Consensus 346 l~~~ 349 (449)
+...
T Consensus 709 Litv 712 (2799)
T KOG1788|consen 709 LITV 712 (2799)
T ss_pred Hhcc
Confidence 7665
No 343
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=71.73 E-value=1.1e+02 Score=30.40 Aligned_cols=167 Identities=17% Similarity=0.164 Sum_probs=85.5
Q ss_pred hhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHH---hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhc
Q 039940 73 FLLREDYPRLQFEAAWVLTNIASGTSVNTKVLI---DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHE 149 (449)
Q Consensus 73 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 149 (449)
.+..-. .+.+.-|+.+|+-+..+.+.+...+. ....+..++..+. .++..+-.++++|.|+..+ +..++.+...
T Consensus 552 ~l~~wp-~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~ 628 (745)
T KOG0301|consen 552 ILLQWP-VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR 628 (745)
T ss_pred HHhcCC-HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH
Confidence 333444 57888888888888775443332222 2234444555444 5567777899999999766 6666666442
Q ss_pred CCHHHHHHHHc---ccccHHHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhcC-CCHHHHHHHHHHHHHcccCC
Q 039940 150 EALIPLLAQLN---EHARLSMLRIGTWTLSNLCKGK--PQPPFDQVRPVLPALAQLIHL-DDEEVLRNVCWTLSNLSDGT 223 (449)
Q Consensus 150 ~~i~~l~~~l~---~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~ 223 (449)
...+...+. ...+..++........|.+.-- ...+....+.+...+..++.. +|-+.....+.++++++..+
T Consensus 629 --~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 629 --LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred --HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 223333221 2223444444333333333221 112222222333333333332 24455667788888888776
Q ss_pred hhHHHHHHHhCcHHHHHHhhCC
Q 039940 224 NDKIQAVIEAGVCGPLVELLGH 245 (449)
Q Consensus 224 ~~~~~~~~~~~~~~~L~~ll~~ 245 (449)
....+ +.+.--++.+..-++.
T Consensus 707 ~~~~~-~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 707 ASVIQ-LAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHH-HHHhcCHHHHHHHHHH
Confidence 55444 3333344555554443
No 344
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=71.01 E-value=1.3e+02 Score=31.02 Aligned_cols=147 Identities=20% Similarity=0.182 Sum_probs=87.3
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
......+...+..+++..-...+.++..+..-..-.... ...-++.-..-....- ..+......+|..++.-+++.
T Consensus 440 ~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~ 515 (727)
T PF12726_consen 440 PNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSH 515 (727)
T ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHH
Confidence 344455566666777776666666666664432111111 1111222222222222 466677888999999877777
Q ss_pred hHHHHh-CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940 101 TKVLID-HGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 101 ~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~ 179 (449)
...+.. .+....+..++-+++.++.+.|..++....... .| .+++..+++.- -........+.+..+.
T Consensus 516 L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R-----~e~i~~ll~~~----~~~tL~ai~~~l~~~~ 584 (727)
T PF12726_consen 516 LKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GR-----LEAIQALLQSN----FSPTLSAINWSLRQLT 584 (727)
T ss_pred HHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cH-----HHHHHHHHHHh----HHHHHHHHHHHHHHHH
Confidence 776665 588999999999999999999999999986432 21 12333333222 2334455566666666
Q ss_pred cCC
Q 039940 180 KGK 182 (449)
Q Consensus 180 ~~~ 182 (449)
...
T Consensus 585 ~~~ 587 (727)
T PF12726_consen 585 KLK 587 (727)
T ss_pred hhh
Confidence 554
No 345
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=70.55 E-value=37 Score=31.15 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=57.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHhcCCCh
Q 039940 25 PAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED------YPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 25 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~------~~~~~~~a~~~L~~l~~~~~ 98 (449)
..+.+.+.+++...+..|+..| .. ++... .++|.++.++...- +-......++.+..+.. ++
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL---~t---D~gl~-----~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~ 248 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSL---RT---DPGLQ-----QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NP 248 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh---cc---CCCch-----hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CC
Confidence 3444555555555555544333 22 12222 24677777765431 14555666677777776 44
Q ss_pred hhhHHHHhCCChHHHHHhhCC----------CChHHHHHHHHHHHHHhc
Q 039940 99 VNTKVLIDHGAVPIFVKLLAS----------PSDDVREQAVWALGNIVA 137 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~~----------~~~~~~~~a~~~L~~l~~ 137 (449)
...-...-..++|.++.++-+ ....+|+.|+.++..+|.
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 433333333478888877722 236899999999999984
No 346
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.83 E-value=20 Score=34.05 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=57.5
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH-hcC-CCHHHHHHHHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL-KSH-GNNGIREKAVTI 440 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-~~~~i~~~a~~~ 440 (449)
++..|...+.+.++.++..|+.+|..+++.+.. .|+..+.+.++++....+ .++ .+..|++++..+
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~------------~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~L 106 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGY------------SFHLQVASKEFLNEMVKRPKNKPRDLKVREKILEL 106 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHH
Confidence 566777778888889999999999999998876 367778788888877776 566 678899999999
Q ss_pred HHHh
Q 039940 441 LETY 444 (449)
Q Consensus 441 i~~~ 444 (449)
|+..
T Consensus 107 I~~W 110 (470)
T KOG1087|consen 107 IDTW 110 (470)
T ss_pred HHHH
Confidence 9874
No 347
>PRK09169 hypothetical protein; Validated
Probab=69.44 E-value=2.3e+02 Score=33.11 Aligned_cols=116 Identities=19% Similarity=0.172 Sum_probs=52.3
Q ss_pred hcHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 22 EILPAMVAGVWS--DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 22 ~~i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
..+..+++.+++ +++..+..+ ..|...+... ......+-..++-..+-.+-+-++ ......++..|..-...++.
T Consensus 163 ~~v~~lLNalSKWP~~~~c~~aa-~~lA~~la~~-~~l~~al~~q~va~~lnalSKwp~-~~~cr~a~~~lA~rL~~~~~ 239 (2316)
T PRK09169 163 ISFALLLNALSKWPDNTDCQTAA-EQLADRLASD-SRLLQAMDAQEVANALNALSKWPD-SPRCRNAAERLAERLADEPG 239 (2316)
T ss_pred HHHHHHHHHhccCCCchHHHHHH-HHHHHHhccC-HHHHHhcchHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHhcChH
Confidence 445666666664 344444443 3444333322 233333333443344444445555 45555566666655554444
Q ss_pred hhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCc
Q 039940 100 NTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPG 141 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~ 141 (449)
.+..+-. .-+..++..|+. ++.+....+...|.......+.
T Consensus 240 l~~~l~~-q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~ 281 (2316)
T PRK09169 240 LLQSLRA-QEVALLLNALSKWPDDEACRQAAEALAARLAREPG 281 (2316)
T ss_pred HHHhcCH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChh
Confidence 4433322 234555555544 3333333344444443333333
No 348
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.82 E-value=63 Score=29.82 Aligned_cols=115 Identities=14% Similarity=0.109 Sum_probs=79.0
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHH
Q 039940 192 PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC 271 (449)
Q Consensus 192 ~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 271 (449)
-.+.-++..+.+.+.+++..++..+..+....+..... -...+++.+..+..+.+..+|......+-.+..........
T Consensus 58 ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~-~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 58 LTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQS-HLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred ccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHH-HHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 34556777788899999999999998887665543332 22356777778888888889988888887755432221111
Q ss_pred HHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 039940 272 VINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN 308 (449)
Q Consensus 272 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~ 308 (449)
..-.=+++.+...|.+. .++++..+...+.-+....
T Consensus 137 p~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred chHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHc
Confidence 12223455666667777 8899999999988887643
No 349
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=68.32 E-value=12 Score=28.99 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=52.2
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHH--HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPID--EVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 98 (449)
.+....++++|+.+...-....+..|.+-. .+..+ ..++.+++..++.-=.... .=.+..|+..|+.+..+
T Consensus 21 a~Qt~~lielLk~~~~~~~~~lldLL~~RV----~PGVD~AA~VKA~FL~~ia~g~~~~~-~Is~~~Av~LLGtM~GG-- 93 (154)
T PF11791_consen 21 AEQTAELIELLKNPPAGEEAFLLDLLTNRV----PPGVDEAAYVKAEFLAAIAKGEISSP-LISPAEAVELLGTMLGG-- 93 (154)
T ss_dssp HHHHHHHHHHHHS--TT-HHHHHHHHHHSS------TT-HHHHHHHHHHHHHHTTSS-BT-TB-HHHHHHHHTTS-SS--
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHhcC----CCCCChHHHHHHHHHHHHHcCCccCC-CcCHHHHHHHHhhccCC--
Confidence 455667888887654332233333333332 22222 2334444444443311222 23356677777777764
Q ss_pred hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhc
Q 039940 99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVA 137 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 137 (449)
--+..|+.+|.+.+.++...|..+|.+-.-
T Consensus 94 ---------YNV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 94 ---------YNVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp ---------TTHHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred ---------CcHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 238999999999999999999999987643
No 350
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=67.60 E-value=60 Score=28.49 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCC---CCCcccHHHHHHHhcchHHHHHHHhcCCC
Q 039940 375 DPEIVTVCLKGLENILKVGEAKKNRGS---TIGDVNQYARLVEGAEGFKKIEDLKSHGN 430 (449)
Q Consensus 375 ~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 430 (449)
|..+.+.++-.+.|++...+....... .-...+.+...|.+.|+++.|-.+..+.+
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~ 191 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQ 191 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCcc
Confidence 556889999999999998554322110 00123457778889999999999977763
No 351
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=67.30 E-value=22 Score=21.98 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=29.7
Q ss_pred HHHHHhcchHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 039940 410 ARLVEGAEGFKKIEDLKSH-GNNGIREKAVTILET 443 (449)
Q Consensus 410 ~~~~~~~~~~~~l~~l~~~-~~~~i~~~a~~~i~~ 443 (449)
.+.+++.|.-..+..+..+ +++++++.|..++.+
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~ 47 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKK 47 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6788889999999999888 999999999999876
No 352
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=66.90 E-value=30 Score=23.42 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=30.3
Q ss_pred HHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039940 410 ARLVEGAEGFKKIEDLKSHGNNGIREKAVTILET 443 (449)
Q Consensus 410 ~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~ 443 (449)
.+.+.+.+.-..+..|..|++++++..|..++..
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~ 70 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKS 70 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778888888889999999999999999999875
No 353
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=66.80 E-value=45 Score=30.37 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCChhhhHHHHhCC--ChHHHHHhhCCC---ChHHHHHHHHHHHHHhcCCCchhhhHh------hc
Q 039940 81 RLQFEAAWVLTNIASGTSVNTKVLIDHG--AVPIFVKLLASP---SDDVREQAVWALGNIVAHSPGCRNLVL------HE 149 (449)
Q Consensus 81 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~~l~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~ 149 (449)
.++..|+.++..+.. ++.....+...+ ++.-|++++..+ ...++..|+.+|..++...+...+.+. ..
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H 315 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc
Confidence 455566666666665 567777777776 899999999753 378999999999999987776666543 23
Q ss_pred CCHHHHHHH
Q 039940 150 EALIPLLAQ 158 (449)
Q Consensus 150 ~~i~~l~~~ 158 (449)
|.+..++..
T Consensus 316 GiL~~llR~ 324 (329)
T PF06012_consen 316 GILPQLLRK 324 (329)
T ss_pred ccHHHHHHH
Confidence 445555443
No 354
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.71 E-value=1.6e+02 Score=30.33 Aligned_cols=248 Identities=14% Similarity=0.114 Sum_probs=137.4
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHh-
Q 039940 28 VAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLID- 106 (449)
Q Consensus 28 ~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~- 106 (449)
=+.++++....+-.+...+.++.... +.. .++ +..+-.|.+....++ ..++...+++...--. ..+.+..
T Consensus 30 dkGlr~~~t~eqpeavvr~~RLFek~--Pfp-ifi-Ns~llrLaDaF~~Gn-~llRf~V~rv~~q~g~----hln~v~n~ 100 (970)
T KOG1988|consen 30 DKGLRSGKTSEQPEAVVRFPRLFEKY--PFP-IFI-NSQLLRLADAFPVGN-NLLRFAVLRVDQQSGK----HLNKVLNG 100 (970)
T ss_pred hhcccccccccchHHHHHHHHHHhhC--Cch-hhh-hHHHHHHHHHhccCc-HHHHHHHHHHHhhccc----cchhhhhh
Confidence 34556666777777777776665432 211 222 233455677777888 6888887777764322 2222322
Q ss_pred CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCC
Q 039940 107 HGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP 186 (449)
Q Consensus 107 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~ 186 (449)
...+..+.....+.|+.-|..++.+++.+..--|+ .+....++..=..+.++--.+.++.+..+++.....-
T Consensus 101 aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE-------fn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~F- 172 (970)
T KOG1988|consen 101 AEFLRRIFYVDHSNDPVARALLLRILGQLSALIPE-------FNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKDF- 172 (970)
T ss_pred hhhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc-------ccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhhh-
Confidence 23444555555678999999999999988655554 3344455544324444434455666666665543111
Q ss_pred hhhhhchHHHHHHhhcCCC--HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHHHHHHHhhc
Q 039940 187 FDQVRPVLPALAQLIHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPALRTVGNIVT 263 (449)
Q Consensus 187 ~~~~~~~l~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~l~~l~~ 263 (449)
-.++...+-.++...+ ...+-..+.++..+..+... -..+......++.. +..+-...-+.++.+++.
T Consensus 173 ---A~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~------A~ra~~l~m~lv~~tps~d~~v~fL~stT~Las 243 (970)
T KOG1988|consen 173 ---ACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATG------ASRAFGLCMSLVSGTPSIDRVVAFLYSTTNLAS 243 (970)
T ss_pred ---HHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhh------hHHHHHHHHHHhcCCCcccceeeehhhhHHHHH
Confidence 1123333444444332 33455566666666533221 11233445555544 344445556667777765
Q ss_pred CChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 264 GDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
..-. .-.+-.+.+.+.++.+....++..+.|.+.+++.
T Consensus 244 rs~~-----ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 244 RSLV-----AISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHH-----HhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 3211 1234567788888755466677778888877764
No 355
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=66.69 E-value=86 Score=27.15 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=53.0
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCC--hHHHHHHHHHHHHHhcCCCc
Q 039940 64 AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPS--DDVREQAVWALGNIVAHSPG 141 (449)
Q Consensus 64 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~~~~~~ 141 (449)
...++.++++++.++. -+ -..++-....+-...-..+..|-+..|.+++.+++ .-+|..|+.+|..++...+.
T Consensus 72 ~~A~~~li~l~~~~~~-~~----~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDD-FL----EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhHHHHHHHHcCCcc-hH----HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 3468899999987662 11 11112211111111111223366788888887754 77999999999999998888
Q ss_pred hhhhHhhcCCHHHHHHH
Q 039940 142 CRNLVLHEEALIPLLAQ 158 (449)
Q Consensus 142 ~~~~~~~~~~i~~l~~~ 158 (449)
.|+.+.+ .+..++..
T Consensus 147 ~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 147 SREEVIQ--YFRELLNY 161 (249)
T ss_pred CHHHHHH--HHHHHHHH
Confidence 7777643 44444444
No 356
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=66.49 E-value=24 Score=26.73 Aligned_cols=96 Identities=20% Similarity=0.171 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhc---cCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHH
Q 039940 334 DIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL---LCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYA 410 (449)
Q Consensus 334 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 410 (449)
..-...+.-|+..+.. . ..... ++..|...+ +..++.+..+|+.+|..|+..+... |.
T Consensus 18 gp~~~~l~eIa~~t~~-~-~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~------------~~ 78 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYN-S-KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER------------FV 78 (125)
T ss_dssp S--HHHHHHHHHHTTS-C-HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH------------HH
T ss_pred CcCHHHHHHHHHHHhc-c-ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH------------HH
Confidence 3334445556666654 2 33333 455666666 5567888999999999999988663 34
Q ss_pred HHHH-hcchHHHHHHHhc-CC-----CHHHHHHHHHHHHHhcCCC
Q 039940 411 RLVE-GAEGFKKIEDLKS-HG-----NNGIREKAVTILETYWLKG 448 (449)
Q Consensus 411 ~~~~-~~~~~~~l~~l~~-~~-----~~~i~~~a~~~i~~~~~~~ 448 (449)
.-++ ....++.+.++.. ++ ...|+++|..+++-.++++
T Consensus 79 ~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~ 123 (125)
T PF01417_consen 79 DELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDE 123 (125)
T ss_dssp HHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcc
Confidence 4443 3344555555533 11 1349999999999777654
No 357
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=65.66 E-value=1e+02 Score=27.77 Aligned_cols=184 Identities=13% Similarity=0.087 Sum_probs=105.0
Q ss_pred cHHHHHHhhCCC----CCcchhhHHHHHHHhhcCChhhHHHHHhc-----------CCHHHHHHHhc------cCCchhH
Q 039940 235 VCGPLVELLGHP----SPSVLIPALRTVGNIVTGDDFQTQCVINH-----------GAVPYLLALLI------NNHKKSI 293 (449)
Q Consensus 235 ~~~~L~~ll~~~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-----------~~l~~L~~ll~------~~~~~~v 293 (449)
++..|+..+-.. .-++|..|+.|+.....++++....+++. .....+...|- +. |+.-
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~ 113 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYR 113 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHH
Confidence 344455444332 34688999999999999888877666521 11222444444 33 5556
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHC--C----------ChHHHHHHhhc-----CchhHHHHHHHHHHHhhccCCHHHHH
Q 039940 294 KKESCWTVSNITAGNRKQIQAVIDA--G----------LIVPLVNLLQD-----AEFDIKKEAAWAISNATKAGTQEQIK 356 (449)
Q Consensus 294 ~~~a~~~l~nl~~~~~~~~~~l~~~--~----------~~~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~ 356 (449)
.+.|+.++..+..++++....+.+- | .+..+..+|.. .++.++..-+..|+.+... ++..+.
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~ 192 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVN 192 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHH
Confidence 6789999999998888876655431 1 24445554433 3677777777778877776 788888
Q ss_pred HHHHcC-ChHHHHhhccC---CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHH-HhcchHHHHHHH
Q 039940 357 YLVREG-CIKPLCDLLLC---ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLV-EGAEGFKKIEDL 425 (449)
Q Consensus 357 ~l~~~~-~~~~L~~ll~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l 425 (449)
.|..++ .++.|+..... .+.-++--|.-.|....++..+... -....+...+ ++.|.-.-+.++
T Consensus 193 ~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s~-----~~R~~l~~ll~~riG~d~y~~kl 261 (312)
T PF04869_consen 193 DFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDSP-----IPRATLHPLLTKRIGRDNYFSKL 261 (312)
T ss_dssp HHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SCC-----C-HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCCC-----cCHHHHHHHHHHhcCHHHHHHHH
Confidence 888765 68888886432 3444555666666666666543321 1223345555 455644444444
No 358
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=64.86 E-value=1.2e+02 Score=29.36 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=73.0
Q ss_pred hchHHHHHHhhcC--------CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC----------CCCcchh
Q 039940 191 RPVLPALAQLIHL--------DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH----------PSPSVLI 252 (449)
Q Consensus 191 ~~~l~~l~~ll~~--------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~----------~~~~v~~ 252 (449)
...+|.++.++.. .|-....+.+..++.|..+..-..+..+. .++|.++.++-. +++.+|.
T Consensus 238 ~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh-~L~PSvlTCvVsk~l~~~p~~dnhwaLRD 316 (576)
T KOG2549|consen 238 QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLH-QLVPSVLTCVVSKNLCLRPELDNHWALRD 316 (576)
T ss_pred HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHH-HHhhHHHHhhhhhhccCCccccchHHHHH
Confidence 4567777776652 45677788888888888776544443333 567777776543 3566888
Q ss_pred hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-CchhHHHHHHHHHHHH
Q 039940 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN-HKKSIKKESCWTVSNI 304 (449)
Q Consensus 253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl 304 (449)
-|+..+..++......... +...+...+.+.+.+. .......-+...|..+
T Consensus 317 fAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 317 FAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence 8999999988765444333 4556777788877654 2444555566666655
No 359
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=64.65 E-value=22 Score=24.76 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=44.6
Q ss_pred HhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHh----hcCchhHHHHHHHHHH
Q 039940 273 INHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLL----QDAEFDIKKEAAWAIS 344 (449)
Q Consensus 273 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll----~~~~~~v~~~a~~aL~ 344 (449)
.+..++.++..++.+..+.++|.....++.++.....+. +..| .+.+...+ .+++..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~----i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN----IKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH----HHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 345678888888766658899999999999998744332 2333 45555554 3346667666665543
No 360
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=64.11 E-value=99 Score=33.36 Aligned_cols=233 Identities=15% Similarity=0.118 Sum_probs=125.0
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch-hhhHhhcCCHHHHHHHH-----cc----cccHHHHHHHHHHHHH
Q 039940 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC-RNLVLHEEALIPLLAQL-----NE----HARLSMLRIGTWTLSN 177 (449)
Q Consensus 108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~~l-----~~----~~~~~~~~~a~~~l~~ 177 (449)
+.+..|+.-+-++..++|..+..++..+....... ....++.-.+ .++..+ .+ .--..+++.++++|..
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~-rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLI-RLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHH-HHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 45667777777788889888888888776432111 0011111111 111111 11 1123678888999988
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940 178 LCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257 (449)
Q Consensus 178 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 257 (449)
+..+.. .......+..+..++..++.+++.-.+..+.....-..+...... ..+++..+.-+.+.+..++..|...
T Consensus 156 ~l~~~~---~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ds~ddv~~~aa~~ 231 (1549)
T KOG0392|consen 156 YLKHMD---ESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLEDSDDDVRSVAAQF 231 (1549)
T ss_pred HHHhhh---hHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcchHHHHHHHHH
Confidence 887642 222345677777777777777766555555443321111111111 1356667777788888899888888
Q ss_pred HHHhhcCChhhH-HHHHhcCCHHHHHHHhccCCchhHHH---HHHHHHHHHhcCCHHHHHHH----HHCCChHHHHHHhh
Q 039940 258 VGNIVTGDDFQT-QCVINHGAVPYLLALLINNHKKSIKK---ESCWTVSNITAGNRKQIQAV----IDAGLIVPLVNLLQ 329 (449)
Q Consensus 258 l~~l~~~~~~~~-~~~~~~~~l~~L~~ll~~~~~~~v~~---~a~~~l~nl~~~~~~~~~~l----~~~~~~~~L~~ll~ 329 (449)
+........... +.+ ..++..+...+..- +. +-. .....+..++... +..... .+.|++|.+...+.
T Consensus 232 l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~l-dd-l~~s~~si~~ll~~l~~~~-evl~l~~~~n~~~~Lvp~~~p~l~ 306 (1549)
T KOG0392|consen 232 LVPAPSIQVKLMVQKI--AKLVHTLWSFLLEL-DD-LSSSTASIMHLLDELCIEN-EVLDLFEQQNLEVGLVPRLWPFLR 306 (1549)
T ss_pred hhhhhHHHHhhhHhHH--HHHHHHHHHHHHHh-hh-cchhhHHHHHHHHHHhhhH-HHHHHHHHhhhhhccchhhHHHHH
Confidence 766655421111 111 12333333333322 22 111 1112223333222 111111 13588899998888
Q ss_pred cCchhHHHHHHHHHHHhhccC
Q 039940 330 DAEFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 330 ~~~~~v~~~a~~aL~~l~~~~ 350 (449)
+.=..++..++..+..+.+..
T Consensus 307 ~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 307 HTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 877788888888888887764
No 361
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.57 E-value=49 Score=31.64 Aligned_cols=76 Identities=8% Similarity=-0.031 Sum_probs=61.1
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhhhh
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA--DPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~ 395 (449)
++..|.+.+.+.++.++..|+..|-.++.+++..+...+.+.+++.-++.+.+.. +.+|+.+++.+|...-.....
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 4556666777778899999999999999988877777888999999999888764 678999999888776654433
No 362
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=62.20 E-value=64 Score=25.88 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHhccCC-----CC---cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHH-h
Q 039940 36 NSMQLEAATQFRRLLSIER-----SL---PIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLI-D 106 (449)
Q Consensus 36 ~~~~~~a~~~L~~l~~~~~-----~~---~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~ 106 (449)
...+..+++.+.......+ .+ ....+++..+.+.+.+.+.+++ ..+-..+++++..+... .+..+. +
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~---~~~~Lk~e 111 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSR---FRSHLKLE 111 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3455666777766654331 12 3445677788889999888888 89999999999998862 232222 1
Q ss_pred C-CChHHHHH-hhCCCC--hHHHHHHHHHHHHHhcCCCchhhh
Q 039940 107 H-GAVPIFVK-LLASPS--DDVREQAVWALGNIVAHSPGCRNL 145 (449)
Q Consensus 107 ~-~~i~~L~~-~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~ 145 (449)
. -.++.++. ++.+++ ..-|+.++.++..++.+..-..+.
T Consensus 112 le~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 112 LEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDL 154 (168)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHH
Confidence 1 23444444 555443 467888999999998765443333
No 363
>PRK09169 hypothetical protein; Validated
Probab=62.03 E-value=3.2e+02 Score=32.10 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=51.9
Q ss_pred HHHHHHhhcC-CCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhh
Q 039940 67 VPRFVEFLLR-EDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRN 144 (449)
Q Consensus 67 i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~ 144 (449)
+..++.-+.. ++ ......++..|.......+.....+-..+ +..++..++ -++......+...|..-....+....
T Consensus 165 v~~lLNalSKWP~-~~~c~~aa~~lA~~la~~~~l~~al~~q~-va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~ 242 (2316)
T PRK09169 165 FALLLNALSKWPD-NTDCQTAAEQLADRLASDSRLLQAMDAQE-VANALNALSKWPDSPRCRNAAERLAERLADEPGLLQ 242 (2316)
T ss_pred HHHHHHHhccCCC-chHHHHHHHHHHHHhccCHHHHHhcchHH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHH
Confidence 4444444443 44 34445555555555554565555544334 444455554 35555555555555555444443332
Q ss_pred hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHH
Q 039940 145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN 177 (449)
Q Consensus 145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~ 177 (449)
.+ ....+..+++-+.+-++.+.-+.++..|.-
T Consensus 243 ~l-~~q~va~~LNAlSKWp~~~~c~~aa~~lA~ 274 (2316)
T PRK09169 243 SL-RAQEVALLLNALSKWPDDEACRQAAEALAA 274 (2316)
T ss_pred hc-CHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 22 223344556666555554444444444443
No 364
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=61.97 E-value=74 Score=24.74 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=51.5
Q ss_pred ChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHH-HHHHhcC---CCHHHHHHH
Q 039940 363 CIKPLCDLLL-CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKK-IEDLKSH---GNNGIREKA 437 (449)
Q Consensus 363 ~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~---~~~~i~~~a 437 (449)
++..|..-+. +.++.+...++.+|..+++.+.. .|...+-..+.++. |..+... ...+|+.++
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~------------~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~ki 106 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGH------------RFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKV 106 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccH------------HHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHH
Confidence 4555555565 46888999999999999998865 35666667777876 7777542 345899999
Q ss_pred HHHHHHh
Q 039940 438 VTILETY 444 (449)
Q Consensus 438 ~~~i~~~ 444 (449)
..+++..
T Consensus 107 l~li~~W 113 (141)
T cd03565 107 LALIQAW 113 (141)
T ss_pred HHHHHHH
Confidence 9888764
No 365
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.36 E-value=45 Score=30.94 Aligned_cols=113 Identities=9% Similarity=-0.024 Sum_probs=64.2
Q ss_pred hcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 039940 329 QDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVGEAKKNRGST 402 (449)
Q Consensus 329 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 402 (449)
++....-...|+.+|-.+..++...+....-...++.-|+.++.- ...++..+.+++|....-......+
T Consensus 55 qSPqe~EAl~altvLe~cmkncGekfH~evgkfrFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~lpe~~K---- 130 (594)
T KOG1086|consen 55 QSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVSLPEEPK---- 130 (594)
T ss_pred CChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheecCcccch----
Confidence 333444445556666666666655555554444556666666542 2455666777766654432222211
Q ss_pred CCcccHHHHHHHhcchH-------------------------------HHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940 403 IGDVNQYARLVEGAEGF-------------------------------KKIEDLKSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 403 ~~~~~~~~~~~~~~~~~-------------------------------~~l~~l~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
.....++++..|.+ ..|..|..+..++--+.|.++|.++..+|
T Consensus 131 ---ikdaYqmLKkqgIik~DP~lp~d~~~~p~ppP~pkssvFddEEksklL~rLLkSn~PeDLqaANkLIK~lVkee 204 (594)
T KOG1086|consen 131 ---IKDAYQMLKKQGIIKSDPKLPVDETPVPAPPPRPKSSVFDDEEKSKLLARLLKSNHPEDLQAANKLIKTLVKEE 204 (594)
T ss_pred ---HHHHHHHHHhcCcccCCCCCCCCCccCCCCCCCCCccccCcHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 11223444444433 56788888888888888888888776543
No 366
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=60.97 E-value=36 Score=28.52 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=44.4
Q ss_pred HHHhcCCHHHHHHHhccCCc-----------------hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCch
Q 039940 271 CVINHGAVPYLLALLINNHK-----------------KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEF 333 (449)
Q Consensus 271 ~~~~~~~l~~L~~ll~~~~~-----------------~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~ 333 (449)
.+.+.|++..++.+|+.+.+ ..+...++..|..++.+++++...+.+ -++.++..+.....
T Consensus 38 llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~~~~ 115 (207)
T PF01365_consen 38 LLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQLQI 115 (207)
T ss_dssp HHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHCCCH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHHhhc
Confidence 34467777777777754211 356678899999999998888777765 23333333333211
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940 334 DIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 334 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
..-..+..++..+... +++....+.+. .++.++.++.....+ ..-+..|..++....
T Consensus 116 ~~~~~~~d~l~~i~~d-N~~L~~~i~e~-~I~~~i~ll~~~gr~--~~~L~~L~~lc~~~g 172 (207)
T PF01365_consen 116 GYGLGALDVLTEIFRD-NPELCESISEE-HIEKFIELLRKHGRQ--PRYLDFLSSLCVCNG 172 (207)
T ss_dssp -TTHHHHHHHHHHHTT---------------------------------------------
T ss_pred cCCchHHHHHHHHHHC-cHHHHHHhhHH-HHHHHHHHHHHcCCC--hHHHHHHhhhcccCC
Confidence 1123456777777775 56666665544 488888888763322 235666777766543
No 367
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.45 E-value=12 Score=33.52 Aligned_cols=63 Identities=6% Similarity=0.061 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCCChhhhHHHHhCCChHHHHHhh--CCCChHHHHHHHHHHHHHhcCCCchhhhHh
Q 039940 85 EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL--ASPSDDVREQAVWALGNIVAHSPGCRNLVL 147 (449)
Q Consensus 85 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 147 (449)
...+.++++|...++..+.+.+.|+++.++.-. .+.++-+++..+.++.++..++.+.++.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 367789999999999999999999999988855 457899999999999999988877766653
No 368
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=60.25 E-value=41 Score=26.13 Aligned_cols=83 Identities=14% Similarity=0.088 Sum_probs=46.3
Q ss_pred CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCC
Q 039940 107 HGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPP 186 (449)
Q Consensus 107 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~ 186 (449)
...-..+..+|.+++.++|..|+.++...- .|.... .-..+-+++ + +..++..... +. +..+.....
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k--~~~l~p------Y~d~L~~Ll-d--d~~frdeL~~-f~-~~~~~~~I~ 82 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK--DPYLTP------YKDNLENLL-D--DKTFRDELTT-FN-LSDESSVIE 82 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cHHHHh------HHHHHHHHc-C--cchHHHHHHh-hc-ccCCcCCCC
Confidence 345677889999999999999999998752 111111 112334444 2 1233332221 11 222222344
Q ss_pred hhhhhchHHHHHHhhc
Q 039940 187 FDQVRPVLPALAQLIH 202 (449)
Q Consensus 187 ~~~~~~~l~~l~~ll~ 202 (449)
......++|.++++|-
T Consensus 83 ~ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 83 EEHRPELMPVVLRILY 98 (141)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 4555788888888874
No 369
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=60.18 E-value=55 Score=25.57 Aligned_cols=99 Identities=16% Similarity=0.117 Sum_probs=46.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHh
Q 039940 195 PALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN 274 (449)
Q Consensus 195 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 274 (449)
..++.+|+.+...-....+..|.+=..-..+. ...++.+++..++.-=.....--...|+..|+.|.-+.
T Consensus 25 ~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY--------- 94 (154)
T PF11791_consen 25 AELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY--------- 94 (154)
T ss_dssp HHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST---------
T ss_pred HHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC---------
Confidence 34555555544333334444444433222111 12334444333332211122223556777776665442
Q ss_pred cCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 275 HGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 275 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
-+..|+.+|.++ +..+...|+.+|.+-.-
T Consensus 95 --NV~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 --NVQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp --THHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred --cHHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 367899999888 88999999999988764
No 370
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.38 E-value=31 Score=35.58 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=69.0
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHc----ccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC
Q 039940 189 QVRPVLPALAQLIHLDDEEVLRNVCWTLSNL----SDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG 264 (449)
Q Consensus 189 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l----~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 264 (449)
....++....++|.+++..+|..++.++..- +..++.... ++. ...+.++..+...++-+...|+.++.+++..
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 3356667777888899999999999888653 233332222 233 5678899999999999999999999999987
Q ss_pred ChhhHHHHHhcCCHHHHHHHhcc
Q 039940 265 DDFQTQCVINHGAVPYLLALLIN 287 (449)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~ 287 (449)
..+....-+-..++|.+-.++.+
T Consensus 878 sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 878 SGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 76654433334567777666543
No 371
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=57.69 E-value=14 Score=26.92 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHH
Q 039940 84 FEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVRE 126 (449)
Q Consensus 84 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~ 126 (449)
...+..+..++. .|+.-..+++.|+++.|+.+|.++|..+..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 456677778887 678888899999999999999998877643
No 372
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=57.16 E-value=13 Score=27.05 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHH
Q 039940 337 KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380 (449)
Q Consensus 337 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~ 380 (449)
...+..+..++. .|+....|++.|++..|+.+|.++|.++..
T Consensus 64 d~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 345566777776 578999999999999999999999887643
No 373
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=57.14 E-value=15 Score=28.67 Aligned_cols=125 Identities=9% Similarity=0.073 Sum_probs=84.5
Q ss_pred ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHCCChHHHHHHhh-cCchhHHHHHHH
Q 039940 265 DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA--GNRKQIQAVIDAGLIVPLVNLLQ-DAEFDIKKEAAW 341 (449)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~~~a~~ 341 (449)
+++..+.+.+.+++..+.++++......++......++-+.. .++...-.+...+.+..++..-- -.+.++...=..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 355667778899999999999885477888888888888775 45555556667777777776532 236778777777
Q ss_pred HHHHhhccCCHHHHHHHHH--cCChHHHH---hhccCCCHHHHHHHHHHHHHH
Q 039940 342 AISNATKAGTQEQIKYLVR--EGCIKPLC---DLLLCADPEIVTVCLKGLENI 389 (449)
Q Consensus 342 aL~~l~~~~~~~~~~~l~~--~~~~~~L~---~ll~~~~~~~~~~~~~~l~~l 389 (449)
.|..++..-+++..+.+.+ .+-.|.+. .+..++|.-+|.++-.++-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 7888877766666666654 23444443 344566666666655554443
No 374
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=57.13 E-value=36 Score=25.52 Aligned_cols=68 Identities=24% Similarity=0.301 Sum_probs=48.2
Q ss_pred ChHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHH-HHHHHHHHHHhhcCC
Q 039940 109 AVPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSM-LRIGTWTLSNLCKGK 182 (449)
Q Consensus 109 ~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~-~~~a~~~l~~l~~~~ 182 (449)
++|.+.+.+. +..++.+..+..+++.++...+-.. ..+..+++.+.++..... .+.++.++..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~------~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD------EVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH------HHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4688888888 6788999999999999987655432 344456655544444333 478888888888654
No 375
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.85 E-value=2.8e+02 Score=29.74 Aligned_cols=131 Identities=8% Similarity=0.131 Sum_probs=85.7
Q ss_pred CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHCCChH
Q 039940 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN--RKQIQAVIDAGLIV 322 (449)
Q Consensus 245 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~--~~~~~~l~~~~~~~ 322 (449)
+-.+++|..++..|+..+...++ .+++...+..+-..|++. +..||..+..+|-.|.... ......+. ..+=.
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk-~~~VRl~~lkaL~~L~e~~~~~~~L~lFt-sRFK~ 372 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDK-NGTVRLRCLKALIKLYEKDEDKDKLELFT-SRFKD 372 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecC-ccHHHHHHHHHHHHHHhccccchHHHHHH-HHHHH
Confidence 45788999999999988876554 467777888888889988 9999999999999998752 12222222 23445
Q ss_pred HHHHHh-hcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 039940 323 PLVNLL-QDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLE 387 (449)
Q Consensus 323 ~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~ 387 (449)
.++.+. .+.+..|+..++..+......+ ++...-+..+..++-+.++.++..+...+.
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~~~~~~g-------~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCLLLSSSG-------LLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhccc-------ccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 566666 3336666666655544443332 122233566777777777777666555444
No 376
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=55.56 E-value=1.2e+02 Score=25.27 Aligned_cols=144 Identities=12% Similarity=0.136 Sum_probs=85.3
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhHH-HHHHHhhcCChhhH
Q 039940 192 PVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPAL-RTVGNIVTGDDFQT 269 (449)
Q Consensus 192 ~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~-~~l~~l~~~~~~~~ 269 (449)
.....+..+..++..+.+.-++..+.......+. ..++.+-..+.+ +++.+....| .+++.+....
T Consensus 51 ~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~---- 118 (213)
T PF08713_consen 51 ELYELADELWESGYREERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH---- 118 (213)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH----
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh----
Confidence 3344556667777777777777666543321111 123445555554 4454554442 2333332211
Q ss_pred HHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 270 QCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 270 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
....+.+...+.++ ++-+++.++-++........ .. .++..+...+.+++.-++....|+|..+...
T Consensus 119 -----~~~~~~~~~W~~s~-~~w~rR~~~v~~~~~~~~~~--~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 119 -----PEALELLEKWAKSD-NEWVRRAAIVMLLRYIRKED--FD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp -----GGHHHHHHHHHHCS-SHHHHHHHHHCTTTHGGGCH--HH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred -----HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhcC--HH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 34677788899998 88888888777766655421 11 1334455556777899999999999999997
Q ss_pred CCHHHHHHHHHc
Q 039940 350 GTQEQIKYLVRE 361 (449)
Q Consensus 350 ~~~~~~~~l~~~ 361 (449)
+++....+++.
T Consensus 186 -~~~~v~~~l~~ 196 (213)
T PF08713_consen 186 -DPDEVLEFLQK 196 (213)
T ss_dssp --HHHHHHHHHH
T ss_pred -CHHHHHHHHHH
Confidence 66666665554
No 377
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.56 E-value=3.4e+02 Score=30.40 Aligned_cols=200 Identities=12% Similarity=0.133 Sum_probs=108.8
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC----CCCcchhhHHHH---HHHhhc
Q 039940 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH----PSPSVLIPALRT---VGNIVT 263 (449)
Q Consensus 191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~a~~~---l~~l~~ 263 (449)
.+.+..+...+.+.|+.++..+.+++.....+-....+.....-.+..+..+.++ +++++....... ..+++.
T Consensus 1438 ~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~~ill 1517 (1758)
T KOG1791|consen 1438 RGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFSDILL 1517 (1758)
T ss_pred cccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHHHHHc
Confidence 3555556666667777777777766655544433321211121122333333332 223222211111 122222
Q ss_pred CChhh----------HHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHCCChHHHHHHhhcC
Q 039940 264 GDDFQ----------TQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA--GNRKQIQAVIDAGLIVPLVNLLQDA 331 (449)
Q Consensus 264 ~~~~~----------~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~~ 331 (449)
...+. ....++...+|.+...+-+. .++.+.+--|.+.-+.. .+....+.+...+++..++....+.
T Consensus 1518 ~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs-~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~sS~ 1596 (1758)
T KOG1791|consen 1518 VPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSS-VFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFYSSP 1596 (1758)
T ss_pred CCccccchhHHHHHHhhhhcccCCCccHHHHHHhc-cccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhhcch
Confidence 21110 01234556777777777666 55555555565554443 2344455667778888888888776
Q ss_pred --chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC--CHHHHHH-HHHHHHHHHHh
Q 039940 332 --EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA--DPEIVTV-CLKGLENILKV 392 (449)
Q Consensus 332 --~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~-~~~~l~~l~~~ 392 (449)
+...+.....+|++-+.. .....+.+-..|....+..++.+. .+..... ....+..+...
T Consensus 1597 l~~~~S~~LIL~~L~~~Vk~-p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~~a 1661 (1758)
T KOG1791|consen 1597 LASEESKRLILATLQKGVKF-PFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLWVA 1661 (1758)
T ss_pred hHHHHHHHHHHHHHHhcCCC-cHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHHHh
Confidence 667777788888887774 233344444578999999999875 3334444 55555555544
No 378
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.46 E-value=83 Score=32.70 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=68.5
Q ss_pred HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHH---hccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940 19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRL---LSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS 95 (449)
Q Consensus 19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l---~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 95 (449)
.-.+++.+-+.+|.+++..+|..|+..|..- +.. .++.-.-.-.-.+|.++..+...+ +-+...|+.++.+++.
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~--~~n~LlPlvhq~W~~vie~~~~k~-~L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLAT--YHNLLLPLVHQTWPSVIECLLCKD-PLIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhc--cchhHhHHHHhhhhHHHHHHhcCc-hHHHHHHHHHHHHHHH
Confidence 3356677778888899999999999888732 222 222222222456899999999999 8999999999999998
Q ss_pred CChhhhHHHHhCCChHHHHHhhC
Q 039940 96 GTSVNTKVLIDHGAVPIFVKLLA 118 (449)
Q Consensus 96 ~~~~~~~~~~~~~~i~~L~~~l~ 118 (449)
...+....-.-..++|.+-.++.
T Consensus 877 ~sgDFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 877 YSGDFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Confidence 66665554444466777776553
No 379
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=54.97 E-value=2.2e+02 Score=28.11 Aligned_cols=135 Identities=14% Similarity=0.028 Sum_probs=82.7
Q ss_pred CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChh--hhhchHHH
Q 039940 119 SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFD--QVRPVLPA 196 (449)
Q Consensus 119 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~l~~ 196 (449)
+-++.+|..|+..|+--+..-|.+ +....++.+.-..| .+.+..++.....++..|+...|..... ..+..-..
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~r 361 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDR 361 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcchHH---HHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 456788888888888776665543 33334555555555 6777899999999999999998776622 23566667
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 039940 197 LAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263 (449)
Q Consensus 197 l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~ 263 (449)
++.++..+..-+|..++..+..+..-. ..+..-+..+..++-+..++-+......+.++|.
T Consensus 362 ILE~~r~D~d~VRi~sik~l~~lr~lg------~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 362 ILEFLRTDSDCVRICSIKSLCYLRILG------VLSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHHhc------ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 777777664447777776665543211 1222223444555556555544444444444443
No 380
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=54.78 E-value=2.1e+02 Score=27.69 Aligned_cols=232 Identities=14% Similarity=0.119 Sum_probs=119.4
Q ss_pred CChHHHHHhhC-CCChHHHHHHHHHHHHHhcC----------CCchhhhHhhcCCHHHHHHHHccc----c---cHHHHH
Q 039940 108 GAVPIFVKLLA-SPSDDVREQAVWALGNIVAH----------SPGCRNLVLHEEALIPLLAQLNEH----A---RLSMLR 169 (449)
Q Consensus 108 ~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~----------~~~~~~~~~~~~~i~~l~~~l~~~----~---~~~~~~ 169 (449)
.+|..+.+.++ ++...++.+++|.|+.+--. -|.--..+-+..++...+.++... + -+...+
T Consensus 97 evir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvk 176 (589)
T PF11229_consen 97 EVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVK 176 (589)
T ss_pred HHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHH
Confidence 35677777776 46688999999999987311 122222333555666777666321 1 233444
Q ss_pred HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCc
Q 039940 170 IGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPS 249 (449)
Q Consensus 170 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~ 249 (449)
.++.-+.......+ .....-..++..++++ +...+++..++.....-+.... ....++..=+.|.++.-++. .
T Consensus 177 vvl~~ia~vgeS~q-yPPVNWaalLsPLMRl--nfGeEvq~lCLeiAvtQaqSSq-sAa~fLg~WlsPpli~sLs~---~ 249 (589)
T PF11229_consen 177 VVLKPIATVGESYQ-YPPVNWAALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQ-SAAMFLGSWLSPPLIHSLSV---N 249 (589)
T ss_pred HHHHHhhhcCCCCC-CCCccHHHHhhHHHhc--cccHHHHHHHHHHHHHhccccc-cHHHHHHhhcCcchhhhhhH---H
Confidence 44444444333221 1111112334444443 3467777777765554443332 23445555555565554433 3
Q ss_pred chhhHHHHHHHhhcC-ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH--CCChHHHH
Q 039940 250 VLIPALRTVGNIVTG-DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVID--AGLIVPLV 325 (449)
Q Consensus 250 v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~--~~~~~~L~ 325 (449)
.+..-+.-+.-...+ .++..+.+++.-.+..+-..-.-. ++++...+...|..-.. .+|.. .+.. +.....+.
T Consensus 250 tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~-~~~lC~saLqGLsqAMKlP~P~~--h~Ws~Lc~ttekIF 326 (589)
T PF11229_consen 250 TKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPS-NPELCQSALQGLSQAMKLPSPAQ--HCWSLLCETTEKIF 326 (589)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHHHhcCCChhh--HHHHHHHHHHHHHH
Confidence 344444444444433 344445554432222222222223 67888888888777544 23322 2222 34566666
Q ss_pred HHh----hcCchhHHHHHHHHHHHhhcc
Q 039940 326 NLL----QDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 326 ~ll----~~~~~~v~~~a~~aL~~l~~~ 349 (449)
+++ ..++.+.-...+.+|..+...
T Consensus 327 ~lLPn~i~~~eveLYi~vAkCLSEMtd~ 354 (589)
T PF11229_consen 327 DLLPNKIQRNEVELYIGVAKCLSEMTDT 354 (589)
T ss_pred HhCcccccHHHHHHHHHHHHHHhhcCHH
Confidence 666 333556666677788877653
No 381
>PLN03205 ATR interacting protein; Provisional
Probab=52.38 E-value=2e+02 Score=26.74 Aligned_cols=160 Identities=13% Similarity=0.155 Sum_probs=93.1
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHcccC---ChhHHHHHHHhCc---HHHHHHh-hCCCCCcchhhHHHHHHHhhc
Q 039940 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDG---TNDKIQAVIEAGV---CGPLVEL-LGHPSPSVLIPALRTVGNIVT 263 (449)
Q Consensus 191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~---~~~L~~l-l~~~~~~v~~~a~~~l~~l~~ 263 (449)
+..+..|+.+..-++..+...+++.|..+..+ +..+.+.-.+.+. ++.+.+. ..+....++.+|+.++..+..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 45666777777667777766666666554322 2222222233333 2233332 234667799999888776655
Q ss_pred CChh--hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH---------------------HC--
Q 039940 264 GDDF--QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVI---------------------DA-- 318 (449)
Q Consensus 264 ~~~~--~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~---------------------~~-- 318 (449)
.++. .++.+....+++.+..+|+...-..|+++|...+--+.- +|.....+. ..
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHHH
Confidence 4433 344555667889999999876456788888765543321 122111111 00
Q ss_pred -CChHHHHHHhhcC-----chhHHHHHHHHHHHhhccCC
Q 039940 319 -GLIVPLVNLLQDA-----EFDIKKEAAWAISNATKAGT 351 (449)
Q Consensus 319 -~~~~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~ 351 (449)
.++.-|-+.+... +.++++.+...|..++.+|.
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 1344455555432 67889999999999998864
No 382
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=52.15 E-value=97 Score=24.82 Aligned_cols=83 Identities=10% Similarity=0.042 Sum_probs=49.2
Q ss_pred cCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH-hhcCCC--HHHHHHHHHHHHHcccCChh
Q 039940 149 EEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQ-LIHLDD--EEVLRNVCWTLSNLSDGTND 225 (449)
Q Consensus 149 ~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-ll~~~~--~~~~~~~~~~l~~l~~~~~~ 225 (449)
....+.++..+ .+.+..+...++.++..+.......-....+-.++.+.. ++.+++ ..-+..++.++..++..+.-
T Consensus 72 ~~l~~~Ll~~~-~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~ 150 (168)
T PF12783_consen 72 DDLCPALLKNL-SSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQF 150 (168)
T ss_pred HHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhH
Confidence 34444555555 334477777788888777755422222233555566555 665543 46677899999999976654
Q ss_pred HHHHHHH
Q 039940 226 KIQAVIE 232 (449)
Q Consensus 226 ~~~~~~~ 232 (449)
..+...+
T Consensus 151 l~~lf~N 157 (168)
T PF12783_consen 151 LVDLFVN 157 (168)
T ss_pred HHHHHHH
Confidence 4444433
No 383
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=48.23 E-value=87 Score=28.82 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=53.9
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhc-CCCHHHHHHHHHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKS-HGNNGIREKAVTIL 441 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~i~~~a~~~i 441 (449)
+++.|..-+...|+.|...++.++..+...+.+. |..-+....+...|..+.. ..-+.|+++...++
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~------------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv 113 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR------------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLV 113 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH------------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 6788888899999999999999999999888663 5555666667777787766 55577777777666
Q ss_pred HHh
Q 039940 442 ETY 444 (449)
Q Consensus 442 ~~~ 444 (449)
.+.
T Consensus 114 ~eW 116 (462)
T KOG2199|consen 114 KEW 116 (462)
T ss_pred HHH
Confidence 543
No 384
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=47.38 E-value=2.4e+02 Score=26.35 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=47.3
Q ss_pred HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCC-hHHHHHHHHHHHHHh
Q 039940 58 IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPS-DDVREQAVWALGNIV 136 (449)
Q Consensus 58 ~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~ 136 (449)
.+..++..++-.|+++.++.+ ++.+...-.+|.++.......+..+.. ++=+.+..+..... -.-....+.+|+.+.
T Consensus 170 aK~yid~~FvlkLLdLFdSED-pRERe~LKT~LhrIygKfl~~r~firk-~iNNif~~FIyEte~hnGIaELLEIlgSiI 247 (457)
T KOG2085|consen 170 AKKYIDQKFVLKLLDLFDSED-PREREFLKTILHRIYGKFLVHRPFIRK-SINNIFLRFIYETERHNGIAELLEILGSII 247 (457)
T ss_pred HHHHhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcchhhhhcccccccCCHHHHHHHHHHhc
Confidence 456677888889999999998 888888888888887644444444332 33345555554311 111223455666554
No 385
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=46.69 E-value=1.9e+02 Score=24.91 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=65.4
Q ss_pred hccCCchhHHHHHHHHHHHHhc------CCHHHHHHHHH--CCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHH---
Q 039940 285 LINNHKKSIKKESCWTVSNITA------GNRKQIQAVID--AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQE--- 353 (449)
Q Consensus 285 l~~~~~~~v~~~a~~~l~nl~~------~~~~~~~~l~~--~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~--- 353 (449)
+.+. ++.+.+.++.+.+++-. .........++ ..+=..+++.+.++++.+|..|...+..++....+.
T Consensus 2 l~d~-d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 2 LNDE-DPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp CT-S-SHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCC-cHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4455 67777777766666542 11222222222 224445666667777788888877777665432110
Q ss_pred -----------------------HHHHHHH--cCChHHHHhhccCCC--HHHHHHHHHHHHHHHHhhhhh
Q 039940 354 -----------------------QIKYLVR--EGCIKPLCDLLLCAD--PEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 354 -----------------------~~~~l~~--~~~~~~L~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~ 396 (449)
..+.|.. .+.++.|++.+.+.. +.+...++..|..+++..+..
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~ 150 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQF 150 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGG
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHH
Confidence 0123332 356888888888764 778889999999999877653
No 386
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=45.50 E-value=1.2e+02 Score=27.08 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=55.8
Q ss_pred CCChHHHHHHhhcCchhHHHHHHHHHHHhhccC------C-------HHHHHHHHHcCChHHHHhhccC-----------
Q 039940 318 AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG------T-------QEQIKYLVREGCIKPLCDLLLC----------- 373 (449)
Q Consensus 318 ~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~------~-------~~~~~~l~~~~~~~~L~~ll~~----------- 373 (449)
...+..+++-|...+...|..|+.+|..++.+. . ..+...+.+.|+++.|..++..
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~~~~~~~~~~~ 138 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMFIENSWSCDDQ 138 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccc
Confidence 346678888888888889999999999998873 1 2234556778999999888731
Q ss_pred ---------CCHHHHHHHHHHHHHHHHhhhhh
Q 039940 374 ---------ADPEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 374 ---------~~~~~~~~~~~~l~~l~~~~~~~ 396 (449)
.+......++.+++-++......
T Consensus 139 ~~~~~~~~~~~~~el~~~LTilY~~vev~r~~ 170 (293)
T PF07923_consen 139 DSNLPAVSLADSTELRVLLTILYFMVEVARRD 170 (293)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 01134556777777777666554
No 387
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=45.47 E-value=1.2e+02 Score=22.25 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=52.9
Q ss_pred CCHHHHHHHhccCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhccC
Q 039940 276 GAVPYLLALLINNH---KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 276 ~~l~~L~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 350 (449)
|++..+...+.+.. +..-|+.+..++..+..-....+. ...|.++..|... .++++..|+.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 45666666666552 335588888888888762222221 2456666666554 6789999999999988876
Q ss_pred CHHHHHHHHH
Q 039940 351 TQEQIKYLVR 360 (449)
Q Consensus 351 ~~~~~~~l~~ 360 (449)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666666554
No 388
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=45.25 E-value=44 Score=24.87 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=32.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhC
Q 039940 66 IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDH 107 (449)
Q Consensus 66 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 107 (449)
+++.|+.-|.+++ +++...|+.+|...|.+. ...+.++..
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHHc
Confidence 4788999999999 899999999999999854 565555543
No 389
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.14 E-value=3.1e+02 Score=26.87 Aligned_cols=65 Identities=8% Similarity=0.076 Sum_probs=48.2
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940 278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 350 (449)
+..+-.+|..+ ++.+|+..-.+.+-+...+|.. +++..|-+..++++.++..+++.+++-+..+.
T Consensus 643 lRhf~h~mhyg-~~hiR~~~PLa~gils~SnPQm-------~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT 707 (881)
T COG5110 643 LRHFSHSMHYG-SSHIRSVLPLAYGILSPSNPQM-------NVFDTLERSSHDGDLNVIINTIFAMGLIGAGT 707 (881)
T ss_pred HHHhhhHhhcC-cHHHHHHHHHHHhcccCCCcch-------HHHHHHHHhccccchhHHHHHHHHhhccccCc
Confidence 44455566667 7888888888888777666643 36778888888888888888888888776654
No 390
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=45.00 E-value=2.2e+02 Score=25.07 Aligned_cols=61 Identities=20% Similarity=0.351 Sum_probs=39.5
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS 95 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 95 (449)
.+.+..|.+.|+.+|+..+ ...+.+... . +++.+.+|.|+..=. + +++...+++.|.+++.
T Consensus 12 l~~LkdL~r~lr~dd~~~~-~v~r~lg~~---~-------iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 12 LECLKDLKRFLRRDDEDQR-DVRRQLGEW---N-------IVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHHHhCcchH-HHHHHHHHh---c-------hhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC
Confidence 4567778888887776665 333333322 1 445566676654432 3 7888999999999986
No 391
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.50 E-value=3.8e+02 Score=27.77 Aligned_cols=327 Identities=16% Similarity=0.145 Sum_probs=166.1
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHhcCCC----hhhhHHHHhC
Q 039940 33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED-YPRLQFEAAWVLTNIASGT----SVNTKVLIDH 107 (449)
Q Consensus 33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~ 107 (449)
++|+.++..|=++|...... .|..-.++.++..++ ++.++.+|+-.+.|.+..+ ++....+.+.
T Consensus 16 ~pdps~rk~aEr~L~~~e~q-----------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~ 84 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLEGQ-----------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEE 84 (960)
T ss_pred CCCCccCchHHHHHHHhccC-----------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchh
Confidence 67788888888888877432 233445667776654 4788899999999988721 1111222221
Q ss_pred --C-ChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC-
Q 039940 108 --G-AVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK- 182 (449)
Q Consensus 108 --~-~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~- 182 (449)
. +-..++.++-+....++.+...+++-++..+ |.. - -..++.++..+ +..|-.+....+.+-..+....
T Consensus 85 ~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~k---W--ptLl~dL~~~l-s~~D~~~~~gVL~tahsiFkr~R 158 (960)
T KOG1992|consen 85 DREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDK---W--PTLLPDLVARL-SSGDFNVINGVLVTAHSIFKRYR 158 (960)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchh---h--HHHHHHHHhhc-cccchHHHHHHHHHHHHHHHhcC
Confidence 1 2244556666667889998889999887554 221 1 11344555555 3444443333333333333222
Q ss_pred CCCChh----hhhchHH----HHH-------Hhhc--CCCHHHHHHHHH-------HHHHcccC-ChhHHHHHHHhCcHH
Q 039940 183 PQPPFD----QVRPVLP----ALA-------QLIH--LDDEEVLRNVCW-------TLSNLSDG-TNDKIQAVIEAGVCG 237 (449)
Q Consensus 183 ~~~~~~----~~~~~l~----~l~-------~ll~--~~~~~~~~~~~~-------~l~~l~~~-~~~~~~~~~~~~~~~ 237 (449)
+..... ...-++. .+. .+.+ .+|......... ....+... -++..+.-++ .++.
T Consensus 159 ~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~-~wM~ 237 (960)
T KOG1992|consen 159 PEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMK-TWMG 237 (960)
T ss_pred cccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHH-HHHH
Confidence 111111 1111111 122 2221 123332222222 22222222 1222221122 3556
Q ss_pred HHHHhhCCCCC-------------cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC----CchhHHHHHHHH
Q 039940 238 PLVELLGHPSP-------------SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN----HKKSIKKESCWT 300 (449)
Q Consensus 238 ~L~~ll~~~~~-------------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~~v~~~a~~~ 300 (449)
.+.+++..++| +++...|..+.-.+...++..+.++. .++.....++.+- .-..+...|...
T Consensus 238 ~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~F 316 (960)
T KOG1992|consen 238 AFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQF 316 (960)
T ss_pred HHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 66666664322 23445566665555555555543332 2444444555432 122355566667
Q ss_pred HHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHH-
Q 039940 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIV- 379 (449)
Q Consensus 301 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~- 379 (449)
|.+.+.. ++....+...+++..+.+... +-|+... +.-..+.+.+.++.+-+.++..|.+.|
T Consensus 317 Lt~V~~r-~~y~~~F~~~~vl~~i~e~Vv-------------lpN~~lR---~eDeElFED~pleYiRRDlEGsDvdTRR 379 (960)
T KOG1992|consen 317 LTSVSRR-PHYAELFEGENVLAQICEKVV-------------LPNLILR---EEDEELFEDNPLEYIRRDLEGSDVDTRR 379 (960)
T ss_pred HHHHHhh-hhhHhhhcchHHHHHHHHhhc-------------ccccccc---hhhHHHhccCHHHHHHHhcccCCcchhH
Confidence 7776553 233333334445444444332 2334332 223455677788889999988887765
Q ss_pred HHHHHHHHHHHHhhhh
Q 039940 380 TVCLKGLENILKVGEA 395 (449)
Q Consensus 380 ~~~~~~l~~l~~~~~~ 395 (449)
..|++.+..+++..+.
T Consensus 380 R~a~dlvrgL~~~fe~ 395 (960)
T KOG1992|consen 380 RAAIDLVRGLCKNFEG 395 (960)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5688888888887754
No 392
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=44.32 E-value=93 Score=22.76 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=50.8
Q ss_pred CChHHHHHHhhc----CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHh
Q 039940 319 GLIVPLVNLLQD----AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC--ADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 319 ~~~~~L~~ll~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~~~~~~~~~l~~l~~~ 392 (449)
|++..+-+.+.+ .+..-|..+..++..+...+ ...... +.+.++.+|++ +.++++..++++-..+++.
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~-~~~i~~-----~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLG-GSHISS-----ARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHh-HHHHHH-----HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 456666666665 36788999999999998853 333333 46667777765 4568999999998888877
Q ss_pred hhh
Q 039940 393 GEA 395 (449)
Q Consensus 393 ~~~ 395 (449)
-+.
T Consensus 85 L~~ 87 (107)
T PF08064_consen 85 LDE 87 (107)
T ss_pred CCH
Confidence 655
No 393
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=44.12 E-value=1.3e+02 Score=22.08 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=53.4
Q ss_pred CCHHHHHHHhcc---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhccC
Q 039940 276 GAVPYLLALLIN---NHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 276 ~~l~~L~~ll~~---~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 350 (449)
|++..+-..+.+ ..+...|+.+..+++.+..-....+. .+.|.++..|... .++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 455555566655 32667888999999988773333222 2455666666543 5589999999999888876
Q ss_pred CHHHHHHHHH
Q 039940 351 TQEQIKYLVR 360 (449)
Q Consensus 351 ~~~~~~~l~~ 360 (449)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 7766666554
No 394
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.99 E-value=3.6e+02 Score=27.28 Aligned_cols=276 Identities=12% Similarity=0.089 Sum_probs=139.0
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHcccCChhHHHHH
Q 039940 152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSDGTNDKIQAV 230 (449)
Q Consensus 152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~ 230 (449)
+..+.+.+..+.|+..+..|=.++..++..+ .++....-++..++ +-...-|..++..+...... ....
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~sp---------eclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~-lpl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSESP---------ECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTP-LPLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccCH---------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCC-CcHH
Confidence 4566777767788888888888888888774 56666666666543 44444455556555543321 0111
Q ss_pred HHhCcHHHHHHhhCCCCCcchhhH----HHHHHHhhcCC--hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHH
Q 039940 231 IEAGVCGPLVELLGHPSPSVLIPA----LRTVGNIVTGD--DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNI 304 (449)
Q Consensus 231 ~~~~~~~~L~~ll~~~~~~v~~~a----~~~l~~l~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl 304 (449)
...++-..++..+.++.|....-. +..++.+.... +..+....-.+.+..+.+.++.+ +.+-..-+...|..+
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~-~ve~~~igv~iLsqL 155 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMD-NVEHCIIGVQILSQL 155 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccC-chHHHHHHHHHHHHH
Confidence 122445567777776655544333 33334443211 11111112223555566666555 444444455555555
Q ss_pred hcC-------C--HHHHHH---HHHC---CChHHHHHHhhcC-----chhHHHHHHHHHHHhhccC-------------C
Q 039940 305 TAG-------N--RKQIQA---VIDA---GLIVPLVNLLQDA-----EFDIKKEAAWAISNATKAG-------------T 351 (449)
Q Consensus 305 ~~~-------~--~~~~~~---l~~~---~~~~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~-------------~ 351 (449)
... . .+.++. +.+. .++..-+++++.. +.+.+......+.++...+ .
T Consensus 156 vqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEss 235 (1082)
T KOG1410|consen 156 VQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESS 235 (1082)
T ss_pred HHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccccccc
Confidence 420 0 011111 1111 1223333333322 1222222222222222110 0
Q ss_pred ---------HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHH
Q 039940 352 ---------QEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKI 422 (449)
Q Consensus 352 ---------~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 422 (449)
-..+..+.+...+..+.++.++-.++.-+.++.+|-.+.......-.. .+...|...+ -.|..+.|
T Consensus 236 ed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~----aeRa~yl~~L-v~Gvk~il 310 (1082)
T KOG1410|consen 236 EDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNG----AERAKYLQHL-VEGVKRIL 310 (1082)
T ss_pred ccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHH-HHHHHHHH
Confidence 112445556667888888888888888888999988888766554321 1122344444 24566666
Q ss_pred HHHhcCCCHHHHHHHHHHHHH
Q 039940 423 EDLKSHGNNGIREKAVTILET 443 (449)
Q Consensus 423 ~~l~~~~~~~i~~~a~~~i~~ 443 (449)
++-+.-.++.-++.--+++-+
T Consensus 311 ~np~~LsD~~nyHeFCRllaR 331 (1082)
T KOG1410|consen 311 ENPQGLSDPANYHEFCRLLAR 331 (1082)
T ss_pred hCCcCCCCcchHHHHHHHHHH
Confidence 666666666666655555544
No 395
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=43.75 E-value=1.1e+02 Score=27.91 Aligned_cols=61 Identities=23% Similarity=0.329 Sum_probs=41.3
Q ss_pred CCcHHHHHHcC--CHHHHHHhhcCCC--CHHHHHHHHHHHHHhcCCChhhhHHHH------hCCChHHHHH
Q 039940 55 SLPIDEVIQAG--IVPRFVEFLLRED--YPRLQFEAAWVLTNIASGTSVNTKVLI------DHGAVPIFVK 115 (449)
Q Consensus 55 ~~~~~~~~~~~--~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~~i~~L~~ 115 (449)
......+...+ ++..|+++++.++ ..+++..|+.+|..++.......+.+. ..|+++.++.
T Consensus 253 ~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR 323 (329)
T PF06012_consen 253 SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLR 323 (329)
T ss_pred HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHH
Confidence 34455666666 8999999998753 368999999999999985544433322 2355555554
No 396
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=43.10 E-value=50 Score=17.18 Aligned_cols=13 Identities=8% Similarity=0.498 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHH
Q 039940 292 SIKKESCWTVSNI 304 (449)
Q Consensus 292 ~v~~~a~~~l~nl 304 (449)
.+|..|+++|+++
T Consensus 2 ~vR~~aa~aLg~~ 14 (30)
T smart00567 2 LVRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHHc
Confidence 4789999999998
No 397
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=42.37 E-value=1.8e+02 Score=23.32 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=52.3
Q ss_pred cCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHccc
Q 039940 149 EEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSD 221 (449)
Q Consensus 149 ~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~ 221 (449)
.+.+...+..+....|..+....+.++.+..... .-........+|.+..++.+..+.-...++..+..+..
T Consensus 27 ~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~-~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~ 98 (164)
T PF13925_consen 27 RNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPE-KWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILK 98 (164)
T ss_pred cCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcC-cccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 4455566666656677888877777777555443 34555568899999999999998888888888877664
No 398
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=42.28 E-value=3.3e+02 Score=26.47 Aligned_cols=106 Identities=15% Similarity=0.110 Sum_probs=58.2
Q ss_pred CChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhc
Q 039940 319 GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKN 398 (449)
Q Consensus 319 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~ 398 (449)
.++-.+.+-....|..+..++..+++.+.. .+.+..++ +++.|.-+|..+..+-.+.|+..+.-.-..-....
T Consensus 238 rLilqf~r~f~RnDk~~c~~~~kfiahLin---q~VahEIv---~Leil~lLLe~PTddSvevaI~flkecGakL~~VS- 310 (739)
T KOG2140|consen 238 RLILQFKRSFRRNDKVSCLNASKFIAHLIN---QQVAHEIV---ALEILTLLLERPTDDSVEVAIAFLKECGAKLAEVS- 310 (739)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhC-
Confidence 344455566666677777778888888774 34455444 47777777877655545555544432221111110
Q ss_pred cCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940 399 RGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL 446 (449)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~ 446 (449)
.. .-.|+++.+..+... .++-.+..-+|+..|.
T Consensus 311 -----------pr--~~n~IfErlR~ILhe--~Eld~rvqy~iEtlf~ 343 (739)
T KOG2140|consen 311 -----------PR--ALNGIFERLRYILHE--GELDRRVQYMIETLFQ 343 (739)
T ss_pred -----------hH--HHhHHHHHHHHHHhH--hhHHHHHHHHHHHHHH
Confidence 00 112345555555422 2366677777777663
No 399
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=42.09 E-value=20 Score=20.97 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=19.0
Q ss_pred CChHHHHHHhhcCchhHHHHHHHH
Q 039940 319 GLIVPLVNLLQDAEFDIKKEAAWA 342 (449)
Q Consensus 319 ~~~~~L~~ll~~~~~~v~~~a~~a 342 (449)
.+...+...+.++++.||+.|...
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 456677777888899999988765
No 400
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=40.90 E-value=46 Score=17.04 Aligned_cols=13 Identities=8% Similarity=0.383 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHh
Q 039940 293 IKKESCWTVSNIT 305 (449)
Q Consensus 293 v~~~a~~~l~nl~ 305 (449)
||..|+++|+++.
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 5788999999883
No 401
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=40.65 E-value=5.9e+02 Score=28.89 Aligned_cols=138 Identities=9% Similarity=0.080 Sum_probs=72.0
Q ss_pred CcHHHHHH----hhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 039940 234 GVCGPLVE----LLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNR 309 (449)
Q Consensus 234 ~~~~~L~~----ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 309 (449)
+.++.++. ++.+.++.++.-+......+-...+... +..++..|+..+-++ ...-...|..+|..++..++
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~----qqeVv~~Lvthi~sg-~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC----QQEVVGALVTHIGSG-NSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh----HHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhccH
Confidence 44555554 4566788888888777777765544322 234777888888666 44445788999999987555
Q ss_pred HHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHH
Q 039940 310 KQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVT 380 (449)
Q Consensus 310 ~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~ 380 (449)
+....... .+..+++.+.+=+..-.+.....++.++..... ... -++.++.-.+-..+.+.+++.+.
T Consensus 506 ~~l~~fa~--~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~-~~s-~i~del~ivIRKQLss~~~~~K~ 572 (1426)
T PF14631_consen 506 SELQPFAT--FLKGILDYLDNLSLQQIRKLFDILCTLAFSDSS-SSS-SIQDELHIVIRKQLSSSNPKYKR 572 (1426)
T ss_dssp HHHHHTHH--HHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHT-SSHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcc-cch-hhHHHHHHHHHHhhcCCcHHHHH
Confidence 54433221 333334444433333344456666666643111 111 12222333444566666666543
No 402
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=40.35 E-value=3.1e+02 Score=25.54 Aligned_cols=252 Identities=10% Similarity=0.109 Sum_probs=121.2
Q ss_pred HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940 19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 98 (449)
+.++..+.+++..+... .....|...+-++..+- ..-.. ..+..-++++.+.+ ..++.+|+.-|-.+|.++.
T Consensus 22 q~v~~y~~il~~~k~~~-k~k~lasq~ip~~fk~f-p~la~-----~a~da~~d~~ed~d-~~ir~qaik~lp~fc~~d~ 93 (460)
T KOG2213|consen 22 QHVDDYEGILKAVKGTS-KEKRLASQFIPRFFKHF-PSLAD-----EAIDAQLDLCEDDD-VGIRRQAIKGLPLFCKGDA 93 (460)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHHHHHhhC-chhhh-----HHHHhhhccccccc-hhhHHHHHhccchhccCch
Confidence 44556666666655443 33444566666665442 22222 33566678888888 7999999999999998632
Q ss_pred hh-----hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHh-cCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHH
Q 039940 99 VN-----TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIV-AHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGT 172 (449)
Q Consensus 99 ~~-----~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~ 172 (449)
-. ...+.+.+-+..|..-....+..+|+.++..|..=. .-.++.-..-++..++..+-..| .+-+-+-....+
T Consensus 94 ~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal-~dVtgeef~lfm 172 (460)
T KOG2213|consen 94 LSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKAL-EDVTGEEFTLFM 172 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 11 111222233333333333357788888877766432 22222222222333444444444 333333344445
Q ss_pred HHHHHhhcCCCCCChhhhhchHHH---HHHh--hcCCCHHHHHHHHHHHHH----cccCChhH-HHHHHHhCcHHHHHHh
Q 039940 173 WTLSNLCKGKPQPPFDQVRPVLPA---LAQL--IHLDDEEVLRNVCWTLSN----LSDGTNDK-IQAVIEAGVCGPLVEL 242 (449)
Q Consensus 173 ~~l~~l~~~~~~~~~~~~~~~l~~---l~~l--l~~~~~~~~~~~~~~l~~----l~~~~~~~-~~~~~~~~~~~~L~~l 242 (449)
..|.++...............+.. +..+ +.-+|++....-+.|+.. .+++.+.. .-..+...++|. .
T Consensus 173 ~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~---~ 249 (460)
T KOG2213|consen 173 DILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH---H 249 (460)
T ss_pred HHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc---c
Confidence 556666554421111111222222 2222 334566666665555543 33333321 111111122222 0
Q ss_pred hCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhc
Q 039940 243 LGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLI 286 (449)
Q Consensus 243 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 286 (449)
......+.+...+.+|+.++..... +.. ...++.++++|.
T Consensus 250 fdkl~e~rkL~lLK~lAEMss~tta--q~a--~q~Lpsi~elLk 289 (460)
T KOG2213|consen 250 FDKLTEERKLDLLKALAEMSSYTTA--QAA--RQMLPSIVELLK 289 (460)
T ss_pred cccchHHHHHHHHHHHHHhCccchH--HHH--HHHHHHHHHHHH
Confidence 1111245677788888888776422 111 124555555553
No 403
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=40.20 E-value=34 Score=26.43 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=43.1
Q ss_pred ChHHHHHHhhcCc----hhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHH
Q 039940 320 LIVPLVNLLQDAE----FDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGL 386 (449)
Q Consensus 320 ~~~~L~~ll~~~~----~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l 386 (449)
+++.+.+.+.... .++...++.++..+....+ ...+.+.+.++.+..++.++ +++..|+++|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~---~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISWIP---IELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS----HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC---HHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 4455555555432 7889999999999988643 34455677899999999544 4477777765
No 404
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=39.54 E-value=1.6e+02 Score=21.97 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=53.5
Q ss_pred ChHHHHHHhh-cCchhHHHHHHHHHHHhhccCC--HHHHHHHHHcCChHHHHhhccCCCHHH-HHHHHHHHHHHHHhhhh
Q 039940 320 LIVPLVNLLQ-DAEFDIKKEAAWAISNATKAGT--QEQIKYLVREGCIKPLCDLLLCADPEI-VTVCLKGLENILKVGEA 395 (449)
Q Consensus 320 ~~~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~--~~~~~~l~~~~~~~~L~~ll~~~~~~~-~~~~~~~l~~l~~~~~~ 395 (449)
++|.+.+.+. ...++.+..+...++.++.... ++.... .++.+ +....+.. ...++-++..+++..+.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~-----l~~~i---~~~~~~~~~~~~~l~~L~~l~q~q~~ 78 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNA-----LMESI---LKNWTQETVQRQALICLIVLCQSQEN 78 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHH-----HHHHH---HhccccchhHHHHHHHHHHHHHcccc
Confidence 5777888888 6678999999999999887642 222222 22223 33333332 36777788888855422
Q ss_pred hhccCCCCCcccHHHHHHHhcchHHHHHHH
Q 039940 396 KKNRGSTIGDVNQYARLVEGAEGFKKIEDL 425 (449)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 425 (449)
.... +.+.+....+-.+..+.+..+
T Consensus 79 ~~~l-----p~~~~~~l~~~~~l~~~L~~l 103 (121)
T PF12397_consen 79 VDSL-----PRKVFKALLKLPDLIELLSEL 103 (121)
T ss_pred cccC-----CHHHHHHHHcCccHHHHHHHH
Confidence 2211 122344444444566667766
No 405
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=38.95 E-value=4.2e+02 Score=26.67 Aligned_cols=165 Identities=10% Similarity=0.065 Sum_probs=82.2
Q ss_pred hcCCCHHHHHHHHHHHHHcccCChhHHHHHHH---hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhc--
Q 039940 201 IHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIE---AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINH-- 275 (449)
Q Consensus 201 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-- 275 (449)
+..-..+.+-.++.+|.-+..+.......... ..++..++..+. .++..+..++++|.|+..+ +...+.+...
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~ 630 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLE 630 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHH
Confidence 33445566667777777666665433332221 134444444444 4566778899999999887 4443333221
Q ss_pred CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-----chhHHHHHHHHHHHhhccC
Q 039940 276 GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-----EFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 276 ~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~ 350 (449)
.++..+...-..+ +..++...+....|++. -.++.-.+.+..+.+...+... +.+-.-..+.||++++..
T Consensus 631 ~i~~~~~~~~s~~-~knl~ia~atlaln~sv---~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~- 705 (745)
T KOG0301|consen 631 SILDPVIEASSLS-NKNLQIALATLALNYSV---LLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV- 705 (745)
T ss_pred HHhhhhhhhhccc-chhHHHHHHHHHHHHHH---HHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc-
Confidence 1222222222222 45565555544455532 1111111134555555544332 334445567788888774
Q ss_pred CHHHHHHHHHcCChHHHHhhccC
Q 039940 351 TQEQIKYLVREGCIKPLCDLLLC 373 (449)
Q Consensus 351 ~~~~~~~l~~~~~~~~L~~ll~~ 373 (449)
......+...--+..+..-+++
T Consensus 706 -~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 706 -DASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred -cHHHHHHHHhcCHHHHHHHHHH
Confidence 2344455554455555555543
No 406
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=38.65 E-value=89 Score=26.14 Aligned_cols=94 Identities=11% Similarity=0.168 Sum_probs=30.9
Q ss_pred cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHh
Q 039940 249 SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLL 328 (449)
Q Consensus 249 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll 328 (449)
++...++..|..++.++......+.+. ++.+...+... ....-..+..++..+..++++....+.+. .+..+++++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-QIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-CH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-hccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 456678889999999887766655442 44333333332 11122356677788878887776666553 488888888
Q ss_pred hcCchhHHHHHHHHHHHhhc
Q 039940 329 QDAEFDIKKEAAWAISNATK 348 (449)
Q Consensus 329 ~~~~~~v~~~a~~aL~~l~~ 348 (449)
...... ..-+..|+.++.
T Consensus 152 ~~~gr~--~~~L~~L~~lc~ 169 (207)
T PF01365_consen 152 RKHGRQ--PRYLDFLSSLCV 169 (207)
T ss_dssp --------------------
T ss_pred HHcCCC--hHHHHHHhhhcc
Confidence 763211 123444444444
No 407
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=37.85 E-value=1.7e+02 Score=21.76 Aligned_cols=101 Identities=19% Similarity=0.092 Sum_probs=61.1
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNR 399 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 399 (449)
+++.|++-|.+.+++|...|...|...+.. +...+.++... +.+..+ .....-++..++.....
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~--~~~le~~v~~~--p~l~~L--------~~~g~~Ll~~~lS~~~G---- 72 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACED--KEYLEYLVSLR--PSLDHL--------GDIGSPLLLRFLSTPSG---- 72 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--hhhHHHHHHcC--cHHHHH--------HHcCHHHHHHHHcchHH----
Confidence 577889999999999999999999999885 35555555421 222111 12223344444433222
Q ss_pred CCCCCcccHHHHHHHhcch-HHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940 400 GSTIGDVNQYARLVEGAEG-FKKIEDLKSHGNNGIREKAVTILETYWL 446 (449)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~i~~~a~~~i~~~~~ 446 (449)
...+.+.|. -+.++......|.+=-..+...+...|.
T Consensus 73 ----------f~~L~~~~~v~~El~~W~~~~N~~YV~~vE~~l~~~~~ 110 (115)
T PF14663_consen 73 ----------FRYLNEIGYVEKELDKWFESFNKEYVKLVEEFLSEALT 110 (115)
T ss_pred ----------HHHhcchhHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Confidence 223334443 3456667888888877777777766554
No 408
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.57 E-value=5e+02 Score=26.79 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHH
Q 039940 33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPI 112 (449)
Q Consensus 33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 112 (449)
..=+.+...++..+..+++.. .+.- ..++..+|.-|.+++ ..+-..|...|.++....|..+..+ +.-
T Consensus 315 D~L~~vk~raL~ti~~lL~~k-PEqE-----~~LL~~lVNKlGDpq-nKiaskAsylL~~L~~~HPnMK~Vv-----i~E 382 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLTNK-PEQE-----NNLLVLLVNKLGDPQ-NKIASKASYLLEGLLAKHPNMKIVV-----IDE 382 (988)
T ss_pred ccHHHHHHHHHHHHHHHHhCC-cHHH-----HHHHHHHHHhcCCcc-hhhhhhHHHHHHHHHhhCCcceeeh-----HHH
Confidence 444677888888888887653 2221 234667778888888 5888888888888877666554333 334
Q ss_pred HHHhhCCCC--hHHHHHHHHHHHHHh
Q 039940 113 FVKLLASPS--DDVREQAVWALGNIV 136 (449)
Q Consensus 113 L~~~l~~~~--~~~~~~a~~~L~~l~ 136 (449)
+..++-.++ ......|+.+|..+.
T Consensus 383 Ier~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 383 IERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred HHHHHcccCccccceeehhhhhhhhH
Confidence 444443332 334444555555543
No 409
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.41 E-value=4.1e+02 Score=25.79 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=66.6
Q ss_pred CHHHHHHHhccCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHH
Q 039940 277 AVPYLLALLINNH---KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQE 353 (449)
Q Consensus 277 ~l~~L~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 353 (449)
+-..|..+|...+ ++.++...+.+|.-+--.+. +.-..++..+..++..++...|..+..=+.....+.+..
T Consensus 17 FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~-----i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~ 91 (616)
T KOG2229|consen 17 FPSELKDLLRTNHTVLPPELREKIVKALILLRNKNL-----IVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKK 91 (616)
T ss_pred hhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCc-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhh
Confidence 4556777776543 67899988888877633221 111235667888888888777766654444333321111
Q ss_pred HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940 354 QIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 354 ~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 396 (449)
....=.+..+-..+..++..+|+.--..++..+.-|.+..-+.
T Consensus 92 ~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~ 134 (616)
T KOG2229|consen 92 HKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN 134 (616)
T ss_pred cccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc
Confidence 1111112223445677888888775666777777666655544
No 410
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=36.39 E-value=4.2e+02 Score=25.95 Aligned_cols=140 Identities=11% Similarity=0.095 Sum_probs=84.1
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc----c---ccHHHHHHHHHHHHHhhcCCCC
Q 039940 112 IFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE----H---ARLSMLRIGTWTLSNLCKGKPQ 184 (449)
Q Consensus 112 ~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----~---~~~~~~~~a~~~l~~l~~~~~~ 184 (449)
.+.+.+...++..+..|+..|..= +... ..++.++.++.+ + .+-....+++...+.|..+...
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~TD----sGL~------~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLETD----SGLQ------QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhccC----ccHH------HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 334444446666666666655432 1111 124455555532 1 3456677788888888888644
Q ss_pred CChhhhhchHHHHHHhhcC----------CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC--Ccchh
Q 039940 185 PPFDQVRPVLPALAQLIHL----------DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS--PSVLI 252 (449)
Q Consensus 185 ~~~~~~~~~l~~l~~ll~~----------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~v~~ 252 (449)
.-......++|.++.++-. +...+|.-+...+..++.+....... .+..++..+.+.+.++. .....
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhh
Confidence 4455567888888887753 23567888888888888776554443 45567777777776653 33444
Q ss_pred hHHHHHHHhh
Q 039940 253 PALRTVGNIV 262 (449)
Q Consensus 253 ~a~~~l~~l~ 262 (449)
-++..|..+.
T Consensus 360 Gai~gL~~lg 369 (576)
T KOG2549|consen 360 GAIAGLSELG 369 (576)
T ss_pred hHHHHHHHhh
Confidence 4555555443
No 411
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.32 E-value=4e+02 Score=27.18 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=41.9
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHh-cCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940 110 VPIFVKLLASPSDDVREQAVWALGNIV-AHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181 (449)
Q Consensus 110 i~~L~~~l~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 181 (449)
+.+++.-+..........|+.+|.--. ...|.+|..+...|++..+++.+.++.......-+..++.+|...
T Consensus 334 ~~yiLStlq~~~~~m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~ 406 (865)
T KOG2152|consen 334 LEYILSTLQSALLPMETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSR 406 (865)
T ss_pred HHHHHhhhhhccccHHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhh
Confidence 344555554443333333444433222 345789999999999999999996665444444444455554443
No 412
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=35.49 E-value=3.6e+02 Score=24.91 Aligned_cols=130 Identities=12% Similarity=0.129 Sum_probs=81.2
Q ss_pred HHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH-hcc---CC-chhHHHHHHHHH
Q 039940 228 QAVIEAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL-LIN---NH-KKSIKKESCWTV 301 (449)
Q Consensus 228 ~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~---~~-~~~v~~~a~~~l 301 (449)
+.+.+.++++.+..+-..+ .+.++..++..+..+....+.. .+....+..++.++ +.. +. ...+.++-...+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 3466678888888877664 4668888999998887653321 22234556666666 432 21 334566666666
Q ss_pred HHHhc---CCHHHHHHHHHCC--------------------------ChHHHHHHhhcCchhHHHHHHHHHHHhhccC--
Q 039940 302 SNITA---GNRKQIQAVIDAG--------------------------LIVPLVNLLQDAEFDIKKEAAWAISNATKAG-- 350 (449)
Q Consensus 302 ~nl~~---~~~~~~~~l~~~~--------------------------~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-- 350 (449)
..+|. .+|.....+.+.+ ++..|+..++.+ ..+-..|..++.-++...
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 66654 5666665555322 356677777665 577777777777777664
Q ss_pred CHHHHHHHHH
Q 039940 351 TQEQIKYLVR 360 (449)
Q Consensus 351 ~~~~~~~l~~ 360 (449)
++...+++++
T Consensus 160 ~~~~~~~i~~ 169 (353)
T PF10257_consen 160 DPALAQYIVE 169 (353)
T ss_pred CcHHHHHHHH
Confidence 5666677766
No 413
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=35.46 E-value=1.6e+02 Score=21.64 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=49.2
Q ss_pred CChHHHHHHhhcC----chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHh
Q 039940 319 GLIVPLVNLLQDA----EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC--ADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 319 ~~~~~L~~ll~~~----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~~~~~~~~~l~~l~~~ 392 (449)
|++..+-+.+.+. +..-|+.+..++..+...+. ..... +.+.++.+|++ +.++++..++++-..+...
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g-~~i~~-----a~pQI~acL~saL~~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG-KHISS-----ALPQIMACLQSALEIPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 4555566666543 34558999999999987532 23222 56777777776 4778999999999888876
Q ss_pred hhh
Q 039940 393 GEA 395 (449)
Q Consensus 393 ~~~ 395 (449)
-+.
T Consensus 85 L~~ 87 (107)
T smart00802 85 LKE 87 (107)
T ss_pred CCH
Confidence 654
No 414
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=35.14 E-value=5.2e+02 Score=26.64 Aligned_cols=74 Identities=14% Similarity=0.250 Sum_probs=54.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 146 (449)
+..|..+..++- .+++..++..+..+...-|+.-. .++..++.-|.+++..+...|...|.+|....|..+..+
T Consensus 306 ievLe~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 306 IEVLEELSKDPL-EEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHccccH-HHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 444444445555 68888888888888876666543 346778888888888898999999999988888765554
No 415
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=34.86 E-value=3.4e+02 Score=24.41 Aligned_cols=123 Identities=12% Similarity=0.167 Sum_probs=82.9
Q ss_pred HHHHcCCHHHHHHhhcCC-------C---------------CHHHHHHHHHHHHHhcCCChhhhHH--------------
Q 039940 60 EVIQAGIVPRFVEFLLRE-------D---------------YPRLQFEAAWVLTNIASGTSVNTKV-------------- 103 (449)
Q Consensus 60 ~~~~~~~i~~L~~ll~~~-------~---------------~~~~~~~a~~~L~~l~~~~~~~~~~-------------- 103 (449)
.+.+.|++|.|-++.+.= + ...++.+-++.+.++|.+++.....
T Consensus 4 ~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF12463_consen 4 RLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELN 83 (303)
T ss_pred HHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccccc
Confidence 355677777777765421 0 0247788889999998843222111
Q ss_pred -------HHhCCChHHHHHhhCC--CChHHHHHHHHHHHHHhcCCCc--hhhhHhhcCCHHHHHHHHcccc--cHHHHHH
Q 039940 104 -------LIDHGAVPIFVKLLAS--PSDDVREQAVWALGNIVAHSPG--CRNLVLHEEALIPLLAQLNEHA--RLSMLRI 170 (449)
Q Consensus 104 -------~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~l~~~l~~~~--~~~~~~~ 170 (449)
--+.|.+..+++.+.. .+...|-.-+.++-.+.++.+. -+..+.+.|.++.++..+.++. +..+...
T Consensus 84 ~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~ 163 (303)
T PF12463_consen 84 SNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQS 163 (303)
T ss_pred ccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHH
Confidence 1224677778877754 4566777778888888877655 3446778899999998885443 4568888
Q ss_pred HHHHHHHhhcCC
Q 039940 171 GTWTLSNLCKGK 182 (449)
Q Consensus 171 a~~~l~~l~~~~ 182 (449)
....|+.|.+..
T Consensus 164 ~FDLLGELiK~n 175 (303)
T PF12463_consen 164 NFDLLGELIKFN 175 (303)
T ss_pred HHHHHHHHHCCC
Confidence 888888888876
No 416
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=34.72 E-value=1.2e+02 Score=33.95 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=76.6
Q ss_pred CCHHHHHH----hhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC
Q 039940 65 GIVPRFVE----FLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP 140 (449)
Q Consensus 65 ~~i~~L~~----ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 140 (449)
+.++.++. ++.+.+ +.++.-+......+....+. ..+..++..|+..+.+++..-...|+.+|..++...+
T Consensus 431 ~~f~siL~la~~Ll~S~e-~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKE-PSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 44555554 355666 78888777777777664432 2233467888888866666556789999999986544
Q ss_pred chhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHH
Q 039940 141 GCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLR 210 (449)
Q Consensus 141 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~ 210 (449)
.. ...-...+..++..+ ++-+..-.+....++..++.............+--.+-+.+.+.+...+.
T Consensus 506 ~~--l~~fa~~l~giLD~l-~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~ 572 (1426)
T PF14631_consen 506 SE--LQPFATFLKGILDYL-DNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKR 572 (1426)
T ss_dssp HH--HHHTHHHHHGGGGGG-GG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHH
T ss_pred HH--HHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHH
Confidence 32 111123344455555 34445555666777777775542222222234444566667777766654
No 417
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=34.23 E-value=74 Score=28.45 Aligned_cols=57 Identities=26% Similarity=0.353 Sum_probs=43.2
Q ss_pred HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC--------------hhhhHHHHhCCChHHHHHhhC
Q 039940 61 VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT--------------SVNTKVLIDHGAVPIFVKLLA 118 (449)
Q Consensus 61 ~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--------------~~~~~~~~~~~~i~~L~~~l~ 118 (449)
..+...+..+++-|.+.+ ...+..|+++|..++.+. ..+...+.+.|+++.+..+|.
T Consensus 56 ~~~~~~i~~ll~~L~~~~-~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 56 DQRKDFIEKLLDQLESSD-SEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hhHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 345566888999999988 788999999999998864 223445667788888888775
No 418
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.78 E-value=7.2e+02 Score=27.83 Aligned_cols=111 Identities=14% Similarity=0.187 Sum_probs=66.7
Q ss_pred HHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940 236 CGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV 315 (449)
Q Consensus 236 ~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 315 (449)
+..+++-+...++.++..|+..++.+....+......+-........++..+. +..||...-.++..+...-.......
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45666677778888999999999999865433222111011122334445566 89999999999998876443433333
Q ss_pred HHCCChHHHHHHhhcCchhHHHHHHHHHHHhhc
Q 039940 316 IDAGLIVPLVNLLQDAEFDIKKEAAWAISNATK 348 (449)
Q Consensus 316 ~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 348 (449)
++ ..++...-...+.+..+...|-..+.....
T Consensus 122 LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 122 LK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HH-hhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 33 244444333344456666666666666554
No 419
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=33.77 E-value=2.3e+02 Score=22.03 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=57.3
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCH-----HHH
Q 039940 281 LLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQ-----EQI 355 (449)
Q Consensus 281 L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-----~~~ 355 (449)
+++-|..+ -..+++.|-++|-+ .+..+ .+.+.+++.+..++...|.+..+.+-.++..... ...
T Consensus 13 ~L~~L~aS-~qSi~kaa~fAlk~--~~~~e--------dL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 13 LLRRLNAS-QQSIQKAAQFALKN--RDMEE--------DLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHcchh-HHHHHHHHHHHHHc--cccHH--------HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchh
Confidence 44445545 56678888888887 32222 3567888888888888888888888777654211 112
Q ss_pred HHHHHcCChHHHHhhccCCC-H--HHHHHHHHHHHHHHHh
Q 039940 356 KYLVREGCIKPLCDLLLCAD-P--EIVTVCLKGLENILKV 392 (449)
Q Consensus 356 ~~l~~~~~~~~L~~ll~~~~-~--~~~~~~~~~l~~l~~~ 392 (449)
..+++. -++.++...-.++ . .-+..+..+|.++-..
T Consensus 82 v~~l~~-dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~k 120 (139)
T PF12243_consen 82 VSMLQR-DLPRIVDAVAPPDNSGAANLKSVRKVLKNWSKK 120 (139)
T ss_pred HHHHHH-HHHHHHHHhCCCCCccchHHHHHHHHHHHHHHc
Confidence 222333 3444444443332 2 3455666666655543
No 420
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=33.59 E-value=2.7e+02 Score=22.90 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=52.6
Q ss_pred CChHHHHhhccC---CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHH
Q 039940 362 GCIKPLCDLLLC---ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAV 438 (449)
Q Consensus 362 ~~~~~L~~ll~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~ 438 (449)
+=+..++..+.+ .+.+....++..+..++...++... .-.+..-|...|..+.+..+....++.+.....
T Consensus 21 ~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~-------R~~lr~e~~~~GL~~il~~l~~~~~~~L~~Qi~ 93 (197)
T PF06367_consen 21 GRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNF-------RVHLRNEFERLGLLDILEKLRNLEDDDLQEQID 93 (197)
T ss_dssp -TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHH-------HHHHHHHHHHTTHHHHHHHHTTS--HHHHHHHH
T ss_pred ccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHH-------HHHHHHHHHHCCcHHHHHHHHhcchHHHHHHHH
Confidence 346677777773 4667888889888888887765442 234667888999999999999999999888766
Q ss_pred HHHHHh
Q 039940 439 TILETY 444 (449)
Q Consensus 439 ~~i~~~ 444 (449)
...+..
T Consensus 94 ~f~~~~ 99 (197)
T PF06367_consen 94 IFEENE 99 (197)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 421
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.34 E-value=1.1e+03 Score=29.71 Aligned_cols=302 Identities=8% Similarity=0.029 Sum_probs=136.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcc------CCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSI------ERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT 97 (449)
Q Consensus 24 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~------~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 97 (449)
++.|++.+..++.++...+..++.-+... +.......-+-.++++.++++..++. -.-+.-.+-.|.-+....
T Consensus 986 ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~-wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 986 LDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDST-WYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHh-HHHHcCCCceeeeehhhc
Confidence 56777777777777766666665544321 11111111222345566666666655 233443444444444433
Q ss_pred hhhhHHHHhCCChHHHHHhhCC---C--C--hHHHHHHHHHHHHHhcCC---CchhhhHhhcCCHHHHHHHHcccccHHH
Q 039940 98 SVNTKVLIDHGAVPIFVKLLAS---P--S--DDVREQAVWALGNIVAHS---PGCRNLVLHEEALIPLLAQLNEHARLSM 167 (449)
Q Consensus 98 ~~~~~~~~~~~~i~~L~~~l~~---~--~--~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~~~~~~~ 167 (449)
+...-.-....++..+...+.. + + .+.....+.-+...+... +.-+... ..+.+.+++..+ .+++..|
T Consensus 1065 ~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-~~~~~~~lv~eL-~npN~~V 1142 (3550)
T KOG0889|consen 1065 PSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKS-AMNVFSPLVLEL-FNPNSDV 1142 (3550)
T ss_pred hHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHH-cCCchHH
Confidence 3111111223455556555543 1 1 112222222222222111 1111111 234566677777 6777899
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhchHHHH-----HHhhcCCCHHHHHHHHHHHHHcccCCh-------hHHHHHHHhC-
Q 039940 168 LRIGTWTLSNLCKGKPQPPFDQVRPVLPAL-----AQLIHLDDEEVLRNVCWTLSNLSDGTN-------DKIQAVIEAG- 234 (449)
Q Consensus 168 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l-----~~ll~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~- 234 (449)
+..+..+|.+++..............-+.+ .+-+..-.-..+.-.+.++.......+ +........+
T Consensus 1143 R~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~ 1222 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIA 1222 (3550)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHH
Confidence 999999999888776222222222222222 111112122222222222222221111 1111000000
Q ss_pred c----HHH---HHHhhCCC----CCcchhhHHHHHHHhhcCChhhHH--HHHhcCCHHHHHHHhccCCchhHHHHHHHHH
Q 039940 235 V----CGP---LVELLGHP----SPSVLIPALRTVGNIVTGDDFQTQ--CVINHGAVPYLLALLINNHKKSIKKESCWTV 301 (449)
Q Consensus 235 ~----~~~---L~~ll~~~----~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l 301 (449)
+ -.. +....... ....+..+...++......+-... .-...+++..+.+.+... .+++...+..++
T Consensus 1223 La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~-~~Ei~~~~~~~l 1301 (3550)
T KOG0889|consen 1223 LADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR-SSELIEVALEGL 1301 (3550)
T ss_pred hhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC-hHHHHHHHHHHH
Confidence 0 001 11111111 123455666666555443332211 112356788888888888 888888888888
Q ss_pred HHHhcCCHHHHHHHHHCCChHHHHHHhh
Q 039940 302 SNITAGNRKQIQAVIDAGLIVPLVNLLQ 329 (449)
Q Consensus 302 ~nl~~~~~~~~~~l~~~~~~~~L~~ll~ 329 (449)
......+...-...++.+.=|.|.++-+
T Consensus 1302 ~~v~~~~~~~~ke~lq~~lrplL~~l~d 1329 (3550)
T KOG0889|consen 1302 RKVLAQDVKLPKELLQSHLRPLLMNLSD 1329 (3550)
T ss_pred HhhhhccccccHHHHHhhHHHHHHhhhH
Confidence 8877665554445555444455554433
No 422
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=32.99 E-value=2.9e+02 Score=22.99 Aligned_cols=141 Identities=13% Similarity=0.142 Sum_probs=85.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC-CChHHHHHH-HHHHHHHhcCCCchhhh
Q 039940 68 PRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQA-VWALGNIVAHSPGCRNL 145 (449)
Q Consensus 68 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a-~~~L~~l~~~~~~~~~~ 145 (449)
..+..+..++. .+.+..|+.++.......+.. .++.+-..+.. ++..+.... ..+++.+....
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~~--------~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTEE--------DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--HH--------HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhHH--------HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 34455667777 688888888776644311111 24555555554 456666555 44455543211
Q ss_pred HhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChh
Q 039940 146 VLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND 225 (449)
Q Consensus 146 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 225 (449)
....+.+...+ .+.++-.++.++-++...... ......+..+...+.+++.-++..+.|+|..++..+++
T Consensus 119 ---~~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 ---PEALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ---GGHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ---HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 11233344444 777888888887665544443 23356666777777888999999999999999998887
Q ss_pred HHHHHHHh
Q 039940 226 KIQAVIEA 233 (449)
Q Consensus 226 ~~~~~~~~ 233 (449)
.....++.
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
No 423
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=32.94 E-value=2.6e+02 Score=22.56 Aligned_cols=154 Identities=12% Similarity=0.133 Sum_probs=81.0
Q ss_pred HHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHh-cCCHHHHHH
Q 039940 236 CGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNIT-AGNRKQIQA 314 (449)
Q Consensus 236 ~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~-~~~~~~~~~ 314 (449)
=|.|+.+|...+. .......|+.+...-.... ...+.+..+-|.+.+.+. ...-...|...+..+. .-..+.+..
T Consensus 5 kplLIsCL~~q~~--k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~-~~~e~~kA~~IF~~L~~~l~~efl~~ 80 (174)
T PF04510_consen 5 KPLLISCLTMQET--KESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSL-SENEPVKAFHIFICLPMPLYGEFLIP 80 (174)
T ss_pred HHHHHHHHHhhcc--cHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHh-hccchHHHHHHHHhCCchhhhhHHHH
Confidence 3566666665432 3444555555543322111 113566777777766554 3333466777777776 334455555
Q ss_pred HHHCCChHHHHHHhhcC-chhHHH--HHH-HHHH---HhhccCC-HHHHHHHHHcCChHHHHhhccCCCH-HHHHHHHHH
Q 039940 315 VIDAGLIVPLVNLLQDA-EFDIKK--EAA-WAIS---NATKAGT-QEQIKYLVREGCIKPLCDLLLCADP-EIVTVCLKG 385 (449)
Q Consensus 315 l~~~~~~~~L~~ll~~~-~~~v~~--~a~-~aL~---~l~~~~~-~~~~~~l~~~~~~~~L~~ll~~~~~-~~~~~~~~~ 385 (449)
+++ ++++.+.+.|.++ +.++.. -|. .+++ .+..... .+..+.+... .++.+..++..+.+ .....++.-
T Consensus 81 ~~~-~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~-mv~Sv~elV~~g~E~~~l~rgl~~ 158 (174)
T PF04510_consen 81 FME-NLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPK-MVKSVKELVERGMEVGFLRRGLRD 158 (174)
T ss_pred HHH-HHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HHHHHHHHHHcccHHHHHHHHHHH
Confidence 555 3777777777665 233332 222 1111 2222211 2333333332 56666677777766 777788888
Q ss_pred HHHHHHhhhh
Q 039940 386 LENILKVGEA 395 (449)
Q Consensus 386 l~~l~~~~~~ 395 (449)
+..+++..-+
T Consensus 159 ~e~~v~~~~~ 168 (174)
T PF04510_consen 159 FESFVSRQMN 168 (174)
T ss_pred HHHHHHHHHH
Confidence 8777765543
No 424
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=32.49 E-value=4.2e+02 Score=24.75 Aligned_cols=226 Identities=15% Similarity=0.160 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh
Q 039940 122 DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI 201 (449)
Q Consensus 122 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll 201 (449)
..-...|...+.+....-|... ..++..-+.++ .+.|..++++|..-|-.+|.++ ....+.+.++++|
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la-----~~a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qLL 105 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLA-----DEAIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQLL 105 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhh-----hHHHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHHH
Confidence 3344556666666655544432 22444555566 6677778888888777777773 1122333344443
Q ss_pred c------------CCCHHHHHHHHHHHHH-cccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC---
Q 039940 202 H------------LDDEEVLRNVCWTLSN-LSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGD--- 265 (449)
Q Consensus 202 ~------------~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~--- 265 (449)
+ ..|..+++.++..|.. +..-.++....-++..+++.+...|.+-..+-....+..|+++....
T Consensus 106 nk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~ 185 (460)
T KOG2213|consen 106 NKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKA 185 (460)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCC
Confidence 3 2356666666655543 22223332222333344445555555433333333444555554322
Q ss_pred -hhhHHHHHhcCCHHHHHHH--hccCCchhHHHHHHHHHH----HHhcCCH--HHHHHHHHCCChHHHHHHhhcCchhHH
Q 039940 266 -DFQTQCVINHGAVPYLLAL--LINNHKKSIKKESCWTVS----NITAGNR--KQIQAVIDAGLIVPLVNLLQDAEFDIK 336 (449)
Q Consensus 266 -~~~~~~~~~~~~l~~L~~l--l~~~~~~~v~~~a~~~l~----nl~~~~~--~~~~~l~~~~~~~~L~~ll~~~~~~v~ 336 (449)
....+.+.+ ...-+-.+ +..+ |++....-..|+. -++.+.+ .... .+...++|. -......+.+
T Consensus 186 ~~a~lqeLa~--~~e~~a~ldaf~~s-D~d~VdRfisCl~~AvPfFargapSskf~~-y~n~~~ip~---~fdkl~e~rk 258 (460)
T KOG2213|consen 186 GEARLQELAE--EQEGLADLDAFNVS-DADYVDRFISCLLMAVPFFARGAPSSKFVE-YLNKHIIPH---HFDKLTEERK 258 (460)
T ss_pred CHHHHHHHHH--HHhhhhccCcccCC-ChHHHHHHHHHHHHhhhhhhcCCchhHHHH-HHHhhhccc---ccccchHHHH
Confidence 111111111 01111111 2223 4444443333333 2333322 2222 223344444 1111135778
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhc
Q 039940 337 KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL 371 (449)
Q Consensus 337 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll 371 (449)
...+.+|..|+.....+.... .++.++++|
T Consensus 259 L~lLK~lAEMss~ttaq~a~q-----~Lpsi~elL 288 (460)
T KOG2213|consen 259 LDLLKALAEMSSYTTAQAARQ-----MLPSIVELL 288 (460)
T ss_pred HHHHHHHHHhCccchHHHHHH-----HHHHHHHHH
Confidence 888999999988765554444 344555554
No 425
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=31.75 E-value=2.3e+02 Score=21.88 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=26.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 039940 418 GFKKIEDLKSHGNNGIREKAVTILETYWLKGR 449 (449)
Q Consensus 418 ~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~~ 449 (449)
.++.+.+...+.++.+++.|..+.++|...+|
T Consensus 95 FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~~~ 126 (135)
T PF13981_consen 95 FIQLIAQAMTHGDDEIKQKARDLYKKYLQLPR 126 (135)
T ss_dssp HHHHHHHHCC-TSCCCHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcChh
Confidence 36777878888899999999999999988764
No 426
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.71 E-value=46 Score=30.13 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc-ccccHHHHHHHHHHHHHhhcCC
Q 039940 127 QAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN-EHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 127 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
+..+.++++|...+...+.+.+.|+++-++.-.. ++.+|-+++....|+.+|..+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN 431 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNN 431 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcc
Confidence 4677999999999999999999999988776553 5678889999999999998876
No 427
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=31.30 E-value=2.1e+02 Score=20.97 Aligned_cols=87 Identities=8% Similarity=0.079 Sum_probs=46.7
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh
Q 039940 163 ARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL 242 (449)
Q Consensus 163 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l 242 (449)
+.+.+..-..|++.+.... ..++..+...+....+.-+-.++..+-.++.+............+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~~a---------~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHA---------KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 3455566666666665322 3566666666666666666666666666665543333333333334555555
Q ss_pred hCCCCCcchhhHHHHH
Q 039940 243 LGHPSPSVLIPALRTV 258 (449)
Q Consensus 243 l~~~~~~v~~~a~~~l 258 (449)
....++.++......+
T Consensus 88 ~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 88 YEKVDEKTRKKLERLL 103 (114)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 5555555554444433
No 428
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=30.35 E-value=2.7e+02 Score=22.81 Aligned_cols=74 Identities=15% Similarity=0.268 Sum_probs=51.0
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHH
Q 039940 279 PYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYL 358 (449)
Q Consensus 279 ~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l 358 (449)
+.+...+.++ +.-+++.+..++....... .... .+++.+-.++.+++.-|+....|+|..+... .++....+
T Consensus 108 ~~~~~w~~s~-~~~~rR~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSE-NEWVRRAAIVLLLRLIKKE-TDFD-----LLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAF 179 (197)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHHHHhc-ccHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHH
Confidence 6788888888 8888888887777765430 0111 1344455555667889999999999999987 55555444
Q ss_pred HH
Q 039940 359 VR 360 (449)
Q Consensus 359 ~~ 360 (449)
++
T Consensus 180 l~ 181 (197)
T cd06561 180 LE 181 (197)
T ss_pred HH
Confidence 43
No 429
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=30.26 E-value=6.3e+02 Score=26.12 Aligned_cols=142 Identities=10% Similarity=0.116 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHH-------cC-
Q 039940 292 SIKKESCWTVSNITAGNRKQIQAVI-DAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR-------EG- 362 (449)
Q Consensus 292 ~v~~~a~~~l~nl~~~~~~~~~~l~-~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-------~~- 362 (449)
....+++.|+..+.-.. -....++ ....+-.+...++...+.+...+...++.++..+.....+.+.. ..
T Consensus 207 k~~~eiIrClka~mNn~-~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~ 285 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNK-FGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKP 285 (1102)
T ss_pred HHHHHHHHHHHHHhccc-cceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcc
Confidence 44556666666664321 1111222 22234555566666677777777777777777654333322221 11
Q ss_pred --ChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHH
Q 039940 363 --CIKPLCDLLLCA-DPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVT 439 (449)
Q Consensus 363 --~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~ 439 (449)
=+..|++.+... +......|...+..+.....+..- .-.+..-+.++|..+.|..+....|+. .....+
T Consensus 286 veRF~piv~gl~~~e~~~l~vacmq~INal~t~p~dldf-------RlhlR~E~mr~gL~~~l~~l~~i~n~~-ldvqlk 357 (1102)
T KOG1924|consen 286 VERFRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDF-------RLHLRSEFMRDGLHKYLPDLTEINNDI-LDVQLK 357 (1102)
T ss_pred hhhhhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhH-------HHHHHHHHHHHhHHHHHHHhhhhccHH-HHHHHH
Confidence 144566666654 566777777777666665555431 112445566888899999987775544 333344
Q ss_pred HHH
Q 039940 440 ILE 442 (449)
Q Consensus 440 ~i~ 442 (449)
+..
T Consensus 358 vfd 360 (1102)
T KOG1924|consen 358 VFD 360 (1102)
T ss_pred HHh
Confidence 443
No 430
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=30.18 E-value=5.7e+02 Score=25.53 Aligned_cols=101 Identities=13% Similarity=-0.026 Sum_probs=69.6
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh---hhHhhcCC
Q 039940 75 LREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR---NLVLHEEA 151 (449)
Q Consensus 75 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~ 151 (449)
.+-+ +.++..++..|+-.+..-|+. +.+..++...--.|.+.+..+|.....++..++...|... +.+ ...
T Consensus 285 ~Dv~-d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~--eRF 358 (740)
T COG5537 285 IDVD-DVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV--ERF 358 (740)
T ss_pred cchh-HHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH--HHH
Confidence 3444 678888888888777644443 4444577888888888999999999999999998887643 221 223
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940 152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
-..+++.+..+.+. |+..+...+..+..-.
T Consensus 359 k~rILE~~r~D~d~-VRi~sik~l~~lr~lg 388 (740)
T COG5537 359 KDRILEFLRTDSDC-VRICSIKSLCYLRILG 388 (740)
T ss_pred HHHHHHHHhhccch-hhHHHHHHHHHHHHhc
Confidence 44566666555555 7777777776665543
No 431
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=29.81 E-value=6.8e+02 Score=26.36 Aligned_cols=182 Identities=15% Similarity=0.104 Sum_probs=85.0
Q ss_pred hhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC-----CCCC--hhhhhchHHHHHHhhcCC--CHHHHHHHH
Q 039940 143 RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-----PQPP--FDQVRPVLPALAQLIHLD--DEEVLRNVC 213 (449)
Q Consensus 143 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-----~~~~--~~~~~~~l~~l~~ll~~~--~~~~~~~~~ 213 (449)
.+.+.+...++.++.++....++.++..+...|..+.+.. |+.- .......+..|+..+-.+ ........+
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i 262 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGI 262 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHH
Confidence 3445567789999999977778889888888888887773 3221 111233444433333221 122222222
Q ss_pred HHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcC---CHHHHHHHhccCCc
Q 039940 214 WTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHG---AVPYLLALLINNHK 290 (449)
Q Consensus 214 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---~l~~L~~ll~~~~~ 290 (449)
..+..+........... .....+.+-....++.+....+.++..-. ....+.+.+.. .++.=...+..+ =
T Consensus 263 ~vlI~ll~~~r~~~~~~---~~~~i~~q~~~~~d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pP-L 335 (838)
T KOG2073|consen 263 IVLISLLNPRRDTVETN---STTTILSQPPSERDPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPP-L 335 (838)
T ss_pred HHHHHhcCccccccccc---ceeeeecCCccccCccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCC-c
Confidence 22222221111000000 00011111111223444444544443222 11222222111 222222223322 3
Q ss_pred hhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcC
Q 039940 291 KSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDA 331 (449)
Q Consensus 291 ~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~ 331 (449)
...|-..+..++.+.. .+......+...+++..++++....
T Consensus 336 G~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y 377 (838)
T KOG2073|consen 336 GFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEY 377 (838)
T ss_pred chHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhc
Confidence 4566677777777765 5555666666777777777777654
No 432
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=29.43 E-value=3.1e+02 Score=22.21 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=85.4
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHH
Q 039940 278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKY 357 (449)
Q Consensus 278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 357 (449)
=|.|+.+|... .++......|+.+.++-...+ ...+.|..+.|.+.+.+.+..--..|...+..+...-..++...
T Consensus 5 kplLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~ 80 (174)
T PF04510_consen 5 KPLLISCLTMQ---ETKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIP 80 (174)
T ss_pred HHHHHHHHHhh---cccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHH
Confidence 35677777644 344555566666654322211 11356777777777765433333667777777773335566666
Q ss_pred HHHcCChHHHHhhccCC-CHHHHHHHH---HHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCH-H
Q 039940 358 LVREGCIKPLCDLLLCA-DPEIVTVCL---KGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNN-G 432 (449)
Q Consensus 358 l~~~~~~~~L~~ll~~~-~~~~~~~~~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~ 432 (449)
+++. .++.+...|.++ +.++...++ .+++..+...+.... ...+.+.+.. .++.+..+.+.+.+ .
T Consensus 81 ~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~-------~~~vk~L~~~--mv~Sv~elV~~g~E~~ 150 (174)
T PF04510_consen 81 FMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMR-------VDLVKELLPK--MVKSVKELVERGMEVG 150 (174)
T ss_pred HHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccH-------HHHHHHHHHH--HHHHHHHHHHcccHHH
Confidence 6665 667777766654 233333322 333333433333211 1112222222 46667777777777 7
Q ss_pred HHHHHHHHHHHhcCC
Q 039940 433 IREKAVTILETYWLK 447 (449)
Q Consensus 433 i~~~a~~~i~~~~~~ 447 (449)
.-.+|.+-+++++..
T Consensus 151 ~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 151 FLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777643
No 433
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.61 E-value=4.9e+02 Score=25.09 Aligned_cols=103 Identities=14% Similarity=0.231 Sum_probs=0.0
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHH
Q 039940 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 270 (449)
Q Consensus 191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 270 (449)
..+...+-.+..+..+++--.-+..|..++.+.++... ...+.|+.++.+.+..++..++.++-.+...++..+.
T Consensus 6 ~kl~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee~~-----~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~ 80 (661)
T KOG2374|consen 6 GKLIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEEVR-----LSSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRT 80 (661)
T ss_pred hHHHHHHHHHhhcCCcccChHHHHHHHHHHhccHHHHH-----HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHhcCCHHHHHHHhccCCch------------hHHHHHHHHH
Q 039940 271 CVINHGAVPYLLALLINNHKK------------SIKKESCWTV 301 (449)
Q Consensus 271 ~~~~~~~l~~L~~ll~~~~~~------------~v~~~a~~~l 301 (449)
.+++. ++.++++.-.. ++ .++..|..++
T Consensus 81 lii~n--~~efLeL~~gt-~p~~PLP~p~~~a~~Lr~~ai~~~ 120 (661)
T KOG2374|consen 81 LIIEN--LDEFLELSIGT-RPNLPLPAPPAVATTLRSKAIEFL 120 (661)
T ss_pred HHHhC--HHHHHHHhhcC-CCCCCCCCChHHHHHHHHHHHHHH
No 434
>PF14750 INTS2: Integrator complex subunit 2
Probab=27.40 E-value=6.9e+02 Score=27.26 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=44.6
Q ss_pred HcCCHHHHHHhhcCCC-C-----------HHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhh-------------
Q 039940 63 QAGIVPRFVEFLLRED-Y-----------PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL------------- 117 (449)
Q Consensus 63 ~~~~i~~L~~ll~~~~-~-----------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l------------- 117 (449)
+++++..|++...... + .+++..++..+..+.-.+|.-.+.+.-+|.-..++.++
T Consensus 873 ~sa~vqiLlE~c~~~~~~~~~~~~~~~~lrei~~~iC~~iHq~FI~~p~L~klvhfQgyp~~llp~~V~~IPSmHicldf 952 (1049)
T PF14750_consen 873 ESAAVQILLEICLPTEEDKNSDDSLLSELREIQCLICSFIHQMFIADPNLAKLVHFQGYPSELLPMLVEGIPSMHICLDF 952 (1049)
T ss_pred HHHHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhcCCCHHHhHHHHccCcHHHHHHHH
Confidence 4567888888774322 1 14666777777777666666666666666444444444
Q ss_pred -----CCCChHHHHHHHHHHHHHhcCC
Q 039940 118 -----ASPSDDVREQAVWALGNIVAHS 139 (449)
Q Consensus 118 -----~~~~~~~~~~a~~~L~~l~~~~ 139 (449)
..++.+-|..|+...+.+|...
T Consensus 953 i~Ell~~~~~~kqvFaI~L~s~L~~~Y 979 (1049)
T PF14750_consen 953 IPELLAQPDLEKQVFAIQLASHLCHKY 979 (1049)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHhhc
Confidence 3345555555555555555443
No 435
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.18 E-value=7e+02 Score=28.22 Aligned_cols=186 Identities=15% Similarity=0.078 Sum_probs=112.4
Q ss_pred HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC---chhHHHHHHHHH---H
Q 039940 229 AVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH---KKSIKKESCWTV---S 302 (449)
Q Consensus 229 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~l---~ 302 (449)
..++.|....++.-+.+.++.+|..|++++...-.+-....+.....-.+-.+..+.+++. ++++-....-.. .
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~ 1513 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFS 1513 (1758)
T ss_pred hhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHH
Confidence 5677788888888999999999999988887765543332222222223334444443321 444433322222 2
Q ss_pred HHhcCC-HH---HH------HHHHHCCChHHHHHHhhcCch---hHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHh
Q 039940 303 NITAGN-RK---QI------QAVIDAGLIVPLVNLLQDAEF---DIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCD 369 (449)
Q Consensus 303 nl~~~~-~~---~~------~~l~~~~~~~~L~~ll~~~~~---~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ 369 (449)
+++-.. .. .+ ...++-..+|.+-+.+.+..+ ..|......+...... ...++.....+..+.++.
T Consensus 1514 ~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks--~~D~ql~~~~~~~~~~ls 1591 (1758)
T KOG1791|consen 1514 DILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKS--CPDYQLLQIRNIFETLLS 1591 (1758)
T ss_pred HHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcC--chhhhHHhhcCcceEeeh
Confidence 222211 11 11 123345567777777766532 3566666666666653 456677777888888888
Q ss_pred hccCC--CHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCC
Q 039940 370 LLLCA--DPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHG 429 (449)
Q Consensus 370 ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 429 (449)
...+. +.+.+...+.+|.+-++.... -.++++..|.+.-+..+.+++
T Consensus 1592 f~sS~l~~~~S~~LIL~~L~~~Vk~p~~-------------a~~mle~~Gl~sWi~niI~s~ 1640 (1758)
T KOG1791|consen 1592 FYSSPLASEESKRLILATLQKGVKFPFY-------------AYEMLEVPGLFSWILNIIPSS 1640 (1758)
T ss_pred hhcchhHHHHHHHHHHHHHHhcCCCcHH-------------HHHHHhcccHHHHHHHhcccc
Confidence 88774 555566677777766655433 367888999999888887665
No 436
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=25.95 E-value=7.1e+02 Score=25.29 Aligned_cols=213 Identities=14% Similarity=0.139 Sum_probs=116.7
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch-----hhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC-----RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
+-+..+++-+++++++++..++..+....+.+... +..-.-......+.....+-.+++.++.++.+++-++...
T Consensus 48 ~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvLamt~ 127 (878)
T KOG2005|consen 48 GDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILSVLAMTM 127 (878)
T ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHHHHheee
Confidence 55899999999999999999999999887544221 1011111222233344433456788899999999888765
Q ss_pred CCCChh-h---h----------hchHHHHHHhhc----C---C---CHHHHHHHHHHHHHcccCCh--hHHHHHHHhCcH
Q 039940 183 PQPPFD-Q---V----------RPVLPALAQLIH----L---D---DEEVLRNVCWTLSNLSDGTN--DKIQAVIEAGVC 236 (449)
Q Consensus 183 ~~~~~~-~---~----------~~~l~~l~~ll~----~---~---~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~~~~ 236 (449)
...... . . ...+..|..-+. . + ..+...-+..++.....++. +.++.+++-+.+
T Consensus 128 se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL~Eve~i 207 (878)
T KOG2005|consen 128 SERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLLMEVEGI 207 (878)
T ss_pred cccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhH
Confidence 322211 0 0 112222222221 1 1 13444445555555444433 456667777888
Q ss_pred HHHHHhhCCCC-----------------Cc---chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940 237 GPLVELLGHPS-----------------PS---VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKE 296 (449)
Q Consensus 237 ~~L~~ll~~~~-----------------~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 296 (449)
+.+++.+...+ |+ +...|..+...+... +....-.+..+-.+...+...+..|+..++.
T Consensus 208 d~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~-~~al~~ai~l~~~~~v~~vf~s~~D~~~kKQ 286 (878)
T KOG2005|consen 208 DLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEY-PRALVGAIRLDDMKEVKEVFTSCTDPLLKKQ 286 (878)
T ss_pred hHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHh-HHHHHHHHhcCcHHHHHHHHHhccCHHHHHH
Confidence 88887776432 12 223333333333322 2222222334456666666666558888999
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHCCCh
Q 039940 297 SCWTVSNITA----GNRKQIQAVIDAGLI 321 (449)
Q Consensus 297 a~~~l~nl~~----~~~~~~~~l~~~~~~ 321 (449)
.++.|+.--- +..+..+.++.++-+
T Consensus 287 ~~ymLaR~~i~~e~~~~e~l~di~sN~~L 315 (878)
T KOG2005|consen 287 MAYMLARHGIYFELSEDEELQDILSNGKL 315 (878)
T ss_pred HHHHHHhcCCceecCcCHHHHHHHccccH
Confidence 8888876532 112444555555543
No 437
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=25.85 E-value=11 Score=36.74 Aligned_cols=125 Identities=17% Similarity=0.100 Sum_probs=76.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC--chhhhHhhcC
Q 039940 73 FLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP--GCRNLVLHEE 150 (449)
Q Consensus 73 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~ 150 (449)
+..+..|..++.+|+...+|++...... +-....+-.+.+-+.+.+..+.-.++.+|.++|...+ ...-..+...
T Consensus 42 m~a~~~ws~~~Vqal~s~~nlaqpt~~e---~S~~~~L~t~t~Gi~S~drflimr~lEIl~~lcgrEgN~qvIc~~l~~d 118 (847)
T KOG2312|consen 42 MVAQPQWSQMQVQALQSNANLAQPTSGE---SSLIKQLLTPTRGISSPDRFLIMRALEILPPLCGREGNPQVICQVLSND 118 (847)
T ss_pred eecccccchhhhHhhhhhcccCCcchhh---hhHHHHHhhhccCCCCCCceeEeeccccCcccccCCCCceeehhhhchH
Confidence 3455666889999999999999833222 2222345555666677888888889999999996443 3222333444
Q ss_pred CHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhh
Q 039940 151 ALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP--QPPFDQVRPVLPALAQLI 201 (449)
Q Consensus 151 ~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~l~~ll 201 (449)
....++..+ .-.|.-+..+.+.+|+.|+.... ..........+..|+.+.
T Consensus 119 ~y~~iv~~l-tl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~ 170 (847)
T KOG2312|consen 119 AYGFIVQGL-TLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLS 170 (847)
T ss_pred HHHHHHhcc-chhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccc
Confidence 555555555 44555566666777776665542 223333456666666554
No 438
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=25.23 E-value=4.3e+02 Score=22.56 Aligned_cols=129 Identities=8% Similarity=0.096 Sum_probs=77.1
Q ss_pred chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC--C------c-----hhHH----HHHHHHHHHHhcCCHHHH
Q 039940 250 VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN--H------K-----KSIK----KESCWTVSNITAGNRKQI 312 (449)
Q Consensus 250 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~------~-----~~v~----~~a~~~l~nl~~~~~~~~ 312 (449)
....+|..+..+... ++....+.+.++++.+.+.|..- . + ..+. ..-...|+.++ .++...
T Consensus 80 y~~vGc~L~~~Ll~~-~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS-~~~~Gl 157 (226)
T PF14666_consen 80 YVRVGCQLLETLLSS-PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLS-STPNGL 157 (226)
T ss_pred HHHHHHHHHHHHHcC-cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHh-CChhHH
Confidence 444566677777665 45555566778888877777432 0 1 1122 22334566664 456777
Q ss_pred HHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940 313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK 391 (449)
Q Consensus 313 ~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~ 391 (449)
+.+-+.+++..+.++....+. -.-....+.++=-. .....+.+ |-..+.+.+..+|..|...|..+++
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~-~~~~~R~i--------LsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYS-VDGHPRII--------LSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCC-CccHHHHH--------HHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 777789999999999877532 11122244444222 22222222 3356778888999999988887764
No 439
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.18 E-value=8.1e+02 Score=25.71 Aligned_cols=246 Identities=9% Similarity=0.049 Sum_probs=123.3
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHH
Q 039940 74 LLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALI 153 (449)
Q Consensus 74 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 153 (449)
++++. ...+-.++..+.++-...|.. .+++ ..+=.|.+....++..+|-..+++...- +.+- .........+.
T Consensus 33 lr~~~-t~eqpeavvr~~RLFek~Pfp--ifiN-s~llrLaDaF~~Gn~llRf~V~rv~~q~--g~hl-n~v~n~aE~lr 105 (970)
T KOG1988|consen 33 LRSGK-TSEQPEAVVRFPRLFEKYPFP--IFIN-SQLLRLADAFPVGNNLLRFAVLRVDQQS--GKHL-NKVLNGAEFLR 105 (970)
T ss_pred ccccc-cccchHHHHHHHHHHhhCCch--hhhh-HHHHHHHHHhccCcHHHHHHHHHHHhhc--cccc-hhhhhhhhhhh
Confidence 45444 244455555555665544432 2222 2233445555567777887666665521 1111 11111111222
Q ss_pred HHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHH-HHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940 154 PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPAL-AQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIE 232 (449)
Q Consensus 154 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l-~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 232 (449)
.+.... ++.|+.-+..++.+++.+..--|... -.+.+ ..-+.+.+.--.+.++.+....+....+...
T Consensus 106 ri~~V~-hsnDp~aRAllL~ilg~~s~lipEfn------~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~FA~---- 174 (970)
T KOG1988|consen 106 RIFYVD-HSNDPVARALLLRILGQLSALIPEFN------QVHHLIRISLDSHHELEVEAAEFAAACFAAQSKDFAC---- 174 (970)
T ss_pred eeEEee-cCCCHHHHHHHHHHHHHhhhhccccc------chhHHHHHHhcCccchhhHHHHHHHhhhhhhhhhhHH----
Confidence 222222 56788888888888888776543322 22333 3344454444455666666666654443322
Q ss_pred hCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940 233 AGVCGPLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK 310 (449)
Q Consensus 233 ~~~~~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 310 (449)
++.-.+-.++... .+..+...+.+++.|..... ....+....+.++......+--..-..++.+++...-.
T Consensus 175 -si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at------~A~ra~~l~m~lv~~tps~d~~v~fL~stT~Lasrs~~ 247 (970)
T KOG1988|consen 175 -SICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHAT------GASRAFGLCMSLVSGTPSIDRVVAFLYSTTNLASRSLV 247 (970)
T ss_pred -HHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhh------hhHHHHHHHHHHhcCCCcccceeeehhhhHHHHHHHHH
Confidence 2233333444432 34467778888888866421 12234556677775542333333345556666543222
Q ss_pred HHHHHHHCCChHHHHHHhhcC-chhHHHHHHHHHHHhhcc
Q 039940 311 QIQAVIDAGLIVPLVNLLQDA-EFDIKKEAAWAISNATKA 349 (449)
Q Consensus 311 ~~~~l~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 349 (449)
.+ .+-+..+.+.++.+ ...++..+.+.+.+++..
T Consensus 248 ai-----~eq~d~l~q~~ked~~kivr~~vl~kl~~La~r 282 (970)
T KOG1988|consen 248 AI-----SEQSDVLLQFLKEDERKIVRLKVLRKLDFLAKR 282 (970)
T ss_pred Hh-----HHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhh
Confidence 11 12344556666533 456666677777776654
No 440
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=25.06 E-value=4.1e+02 Score=22.25 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=48.6
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHH
Q 039940 278 VPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIK 356 (449)
Q Consensus 278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 356 (449)
.+.+.....++ +.-.|+.|+.+....... +.+. +...+...+.+++.-+++...|+|..++.. +++...
T Consensus 117 ~~~l~~W~~s~-~~W~rR~ai~~~l~~~~~~~~~~--------l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~-d~~~V~ 186 (208)
T cd07064 117 EPVMDEWSTDE-NFWLRRTAILHQLKYKEKTDTDL--------LFEIILANLGSKEFFIRKAIGWALREYSKT-NPDWVR 186 (208)
T ss_pred HHHHHHHHcCC-cHHHHHHHHHHHHHHHHccCHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHhcc-CHHHHH
Confidence 45677788888 888888887654444332 2221 122344455666788899999999999998 666665
Q ss_pred HHHH
Q 039940 357 YLVR 360 (449)
Q Consensus 357 ~l~~ 360 (449)
.+++
T Consensus 187 ~fl~ 190 (208)
T cd07064 187 DFVA 190 (208)
T ss_pred HHHH
Confidence 5554
No 441
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=24.96 E-value=1.3e+02 Score=28.97 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=51.2
Q ss_pred cHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 235 VCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 235 ~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
....+-.+..+.+++++..+..++++++.+.......+.....-..++.++..+ .+++-+.++.++..+..
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhhh
Confidence 344555555678899999999999999887554443333445566778888877 78888888888877653
No 442
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=24.41 E-value=2.9e+02 Score=20.24 Aligned_cols=87 Identities=11% Similarity=0.054 Sum_probs=54.8
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHh
Q 039940 290 KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCD 369 (449)
Q Consensus 290 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ 369 (449)
.+.+..-+.|++.+... .. .++..+.+.+....+.-+..+++.+-.++....... .........+.+..
T Consensus 18 ~~~I~~lt~~a~~~~~~-----a~-----~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~-~~~~~~~~~~~f~~ 86 (114)
T cd03562 18 QPSIQTLTKLAIENRKH-----AK-----EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKY-KEFFSEFLVPLFLD 86 (114)
T ss_pred HHHHHHHHHHHHHHHHH-----HH-----HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccch-HHHHHHHHHHHHHH
Confidence 55666667777776621 11 245566666776677888888888888888743333 33333344666777
Q ss_pred hccCCCHHHHHHHHHHHH
Q 039940 370 LLLCADPEIVTVCLKGLE 387 (449)
Q Consensus 370 ll~~~~~~~~~~~~~~l~ 387 (449)
.....+++++.+...++.
T Consensus 87 ~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 87 AYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 777778888766554443
No 443
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=24.20 E-value=2e+02 Score=18.33 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=32.0
Q ss_pred HHHHHHhcchHHHHHHH-hcCCCHHHHHHHHHHHHHhcCCC
Q 039940 409 YARLVEGAEGFKKIEDL-KSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 409 ~~~~~~~~~~~~~l~~l-~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
-.+.+++.|+...+..+ ...+++++.+.+.++++-+..+|
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE 51 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDE 51 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 37889999999999988 45568999999999888665444
No 444
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=23.75 E-value=93 Score=29.79 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=46.3
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhc
Q 039940 280 YLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATK 348 (449)
Q Consensus 280 ~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 348 (449)
.+-.+..++ +++++.+|..++++++.+....+........-..+++++..+.+++-+.+..|+.-+..
T Consensus 332 ~lk~~~a~~-n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 332 ALKSLCAHK-NPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHhccc-ChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 333344455 89999999999999987643333222233345567777777888888888888877654
No 445
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=23.26 E-value=1.8e+02 Score=17.41 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=17.1
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHhcCCCc
Q 039940 111 PIFVKLLASPSDDVREQAVWALGNIVAHSPG 141 (449)
Q Consensus 111 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 141 (449)
..++++|..+++..+.+.+.+|+.+..-+|.
T Consensus 10 Nvl~~fl~~~~~~~~~~llpvi~tlL~fs~~ 40 (46)
T PF01465_consen 10 NVLLQFLESREPSEREQLLPVIATLLKFSPE 40 (46)
T ss_dssp HHHHHHHTTSS---HHHHHHHHHHHTT--HH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHCCCHH
Confidence 4566677766666777777777776655543
No 446
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=23.18 E-value=4.9e+02 Score=22.42 Aligned_cols=70 Identities=21% Similarity=0.151 Sum_probs=44.1
Q ss_pred hccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 039940 370 LLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETY 444 (449)
Q Consensus 370 ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~ 444 (449)
+++++|+.+.+.++.+..+++...-..-... .........+. ...+.+.++.++.++.++-.+.|.+++.
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~---~~~~~~W~~~~--~lK~~Il~~~~~~~~gvk~~~iKFle~v 70 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVN---PSDEQLWESMN--ELKDRILSLWDSENPGVKLAAIKFLERV 70 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHH--HHHHHHHHGGGSSSHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCC---chHHHHHHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 4677889999988888888776532221000 00111222221 3356777778888999999999999975
No 447
>PF15573 Imm27: Immunity protein 27
Probab=22.70 E-value=2.8e+02 Score=23.41 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=44.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhH
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLV 146 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 146 (449)
=+.|++++.+..++.+...+.+.++.+|.++ + +.+.+-+..|... ....+-..+..+...+
T Consensus 48 K~LLiqLMN~TkDE~vLNLCiRlFcSV~THd-D----L~~~nNl~FLs~a---sE~~v~TF~s~A~~tl----------- 108 (259)
T PF15573_consen 48 KNLLIQLMNQTKDEAVLNLCIRLFCSVATHD-D----LRDSNNLRFLSSA---SEFGVFTFASGAITTL----------- 108 (259)
T ss_pred hHHHHHHHhcchhHHHHHHHHHHHHhhcchH-h----hhcccceehHhhh---hHHHHHHHHHHhhccc-----------
Confidence 3678999998886778888999999999843 2 2333333322211 1123333333333333
Q ss_pred hhcCCHHHHHHHHcc
Q 039940 147 LHEEALIPLLAQLNE 161 (449)
Q Consensus 147 ~~~~~i~~l~~~l~~ 161 (449)
+..++|.|+.++..
T Consensus 109 -SyeVIPYLLaLlee 122 (259)
T PF15573_consen 109 -SYEVIPYLLALLEE 122 (259)
T ss_pred -hhhHHHHHHHHHHH
Confidence 34578889888854
No 448
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=22.63 E-value=4.3e+02 Score=21.57 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=51.2
Q ss_pred HHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940 155 LLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIE 232 (449)
Q Consensus 155 l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 232 (449)
++.....+++.-+++.+..++....... ......++.+-.++.+++.-++..+.|+|..++...++....+++
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKKE-----TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 3333337788888888887777766551 123566777777777788899999999999999887765544443
No 449
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=21.83 E-value=1.7e+02 Score=17.30 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=21.7
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039940 417 EGFKKIEDLKSHGNNGIREKAVTILET 443 (449)
Q Consensus 417 ~~~~~l~~l~~~~~~~i~~~a~~~i~~ 443 (449)
|..+.|+.+....++..+..|..++++
T Consensus 17 ~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 17 GARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 355667888788889999999998875
No 450
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.31 E-value=1.2e+03 Score=26.25 Aligned_cols=205 Identities=14% Similarity=0.095 Sum_probs=112.9
Q ss_pred hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh
Q 039940 188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF 267 (449)
Q Consensus 188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 267 (449)
.....-+..+++-+...|+..+..++..+..+....+.....-+-........++..+.+..+|...-.++..+...-..
T Consensus 37 ~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk 116 (1312)
T KOG0803|consen 37 LELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKK 116 (1312)
T ss_pred hccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777778788999999999999999866543222111112334555667788899999999999888765333
Q ss_pred hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH---HCCChHHHHHHhhc--------------
Q 039940 268 QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVI---DAGLIVPLVNLLQD-------------- 330 (449)
Q Consensus 268 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~---~~~~~~~L~~ll~~-------------- 330 (449)
......+. .++...-.-.+. +..+...|-..+..... ++...+++ +..+.+.+-+.+-.
T Consensus 117 ~lsp~LK~-li~~wl~~~~d~-~~~vs~aa~~sf~~~f~--~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~ 192 (1312)
T KOG0803|consen 117 KLSPFLKS-LIPPWLGGQFDL-DYPVSEAAKASFKDGFA--EEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSS 192 (1312)
T ss_pred HhhHHHHh-hhhhhhheeccc-chHHHHHHHHHHHhhcC--hhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcch
Confidence 32222222 223222222233 44555555555555533 22222222 22233333333211
Q ss_pred -----CchhHHHHHHHHHHHhhc-cCCHHHHHHHHH-cC---ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940 331 -----AEFDIKKEAAWAISNATK-AGTQEQIKYLVR-EG---CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 331 -----~~~~v~~~a~~aL~~l~~-~~~~~~~~~l~~-~~---~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 396 (449)
.-..+...+..++..+.. .++.+......+ .+ .-+.+-.++++..+.++....+++..+++.....
T Consensus 193 Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 193 EELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 112344455555555552 222222221111 11 2455667788889999999999999888877654
No 451
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=21.25 E-value=7.8e+02 Score=24.08 Aligned_cols=229 Identities=15% Similarity=0.128 Sum_probs=113.7
Q ss_pred CHHHHHHHHcccccHHHHHHHHHHHHHhhcCC---------CCCChh--hhhchHHHHHHhh----cCCC----HHHHHH
Q 039940 151 ALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK---------PQPPFD--QVRPVLPALAQLI----HLDD----EEVLRN 211 (449)
Q Consensus 151 ~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~---------~~~~~~--~~~~~l~~l~~ll----~~~~----~~~~~~ 211 (449)
+++.+.+.+..+...-++.++.|.|.++-... ...++. -...++...+.++ +... +.....
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkv 177 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKV 177 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHH
Confidence 44455555545556677788888887653211 011111 1133333333333 3322 334444
Q ss_pred HHHHHHHcc---cCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC
Q 039940 212 VCWTLSNLS---DGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINN 288 (449)
Q Consensus 212 ~~~~l~~l~---~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 288 (449)
++.-+.... ..+|-+-. -++.+|.++ +-..+++..++.....=+.. ......++..-+.|.++.-++..
T Consensus 178 vl~~ia~vgeS~qyPPVNWa-----alLsPLMRl--nfGeEvq~lCLeiAvtQaqS-SqsAa~fLg~WlsPpli~sLs~~ 249 (589)
T PF11229_consen 178 VLKPIATVGESYQYPPVNWA-----ALLSPLMRL--NFGEEVQQLCLEIAVTQAQS-SQSAAMFLGSWLSPPLIHSLSVN 249 (589)
T ss_pred HHHHhhhcCCCCCCCCccHH-----HHhhHHHhc--cccHHHHHHHHHHHHHhccc-cccHHHHHHhhcCcchhhhhhHH
Confidence 444443332 12222222 223344443 22455666555433222222 22334455555666666655443
Q ss_pred CchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHH
Q 039940 289 HKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPL 367 (449)
Q Consensus 289 ~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L 367 (449)
.++.-+..+.-... ..++.++.+++.-.+..+-..-.-.++++...+...|..-....++.+.-.-.=+...+.+
T Consensus 250 ----tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekI 325 (589)
T PF11229_consen 250 ----TKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKI 325 (589)
T ss_pred ----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence 56666666666655 3556666666533333332222234788888888888887776554432221123467777
Q ss_pred HhhccC----CCHHHHHHHHHHHHHHHH
Q 039940 368 CDLLLC----ADPEIVTVCLKGLENILK 391 (449)
Q Consensus 368 ~~ll~~----~~~~~~~~~~~~l~~l~~ 391 (449)
.+++-+ ++-+......++|..+..
T Consensus 326 F~lLPn~i~~~eveLYi~vAkCLSEMtd 353 (589)
T PF11229_consen 326 FDLLPNKIQRNEVELYIGVAKCLSEMTD 353 (589)
T ss_pred HHhCcccccHHHHHHHHHHHHHHhhcCH
Confidence 777733 344455566677766554
No 452
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=20.88 E-value=5.3e+02 Score=22.02 Aligned_cols=131 Identities=16% Similarity=0.117 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-------------CHH----HHHHHHHHHHHhcCCCh
Q 039940 36 NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED-------------YPR----LQFEAAWVLTNIASGTS 98 (449)
Q Consensus 36 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-------------~~~----~~~~a~~~L~~l~~~~~ 98 (449)
......++..+..+.+. ++........++++.+.+.|..-+ ... .-..=...|+.++. ++
T Consensus 78 ~~y~~vGc~L~~~Ll~~--~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~ 154 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSS--PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TP 154 (226)
T ss_pred hHHHHHHHHHHHHHHcC--cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-Ch
Confidence 33344556666666654 566777778899999888775431 011 22233457788877 67
Q ss_pred hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940 99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l 178 (449)
.....+-+.++...+..+....+. .....-++.++=.. ..|....++.......+..++..|...|..+
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~---------~~~~~R~iLsKaLt~~s~~iRl~aT~~L~~l 223 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYS---------VDGHPRIILSKALTSGSESIRLYATKHLRVL 223 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCC---------CccHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 788888888999999999987543 12222355555111 1334455555555788889999999888776
Q ss_pred hc
Q 039940 179 CK 180 (449)
Q Consensus 179 ~~ 180 (449)
.+
T Consensus 224 lr 225 (226)
T PF14666_consen 224 LR 225 (226)
T ss_pred hc
Confidence 53
No 453
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=20.75 E-value=7.3 Score=37.98 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=80.6
Q ss_pred HHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHH
Q 039940 238 PLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA--GNRKQIQAV 315 (449)
Q Consensus 238 ~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l 315 (449)
.|+..-+..-..+...|+...+|++...... +-....+-.+.+.+.+. |..+.-.+...+.++|. +++..+...
T Consensus 39 ~lVm~a~~~ws~~~Vqal~s~~nlaqpt~~e---~S~~~~L~t~t~Gi~S~-drflimr~lEIl~~lcgrEgN~qvIc~~ 114 (847)
T KOG2312|consen 39 VLVMVAQPQWSQMQVQALQSNANLAQPTSGE---SSLIKQLLTPTRGISSP-DRFLIMRALEILPPLCGREGNPQVICQV 114 (847)
T ss_pred eeeeecccccchhhhHhhhhhcccCCcchhh---hhHHHHHhhhccCCCCC-CceeEeeccccCcccccCCCCceeehhh
Confidence 3333333344567888999999998732221 11223344445555666 77778888889999985 677767677
Q ss_pred HHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhc
Q 039940 316 IDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL 371 (449)
Q Consensus 316 ~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll 371 (449)
+........+..+.-.|.-+......+|..|...|+-.+....--.+.+..|+.+.
T Consensus 115 l~~d~y~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~ 170 (847)
T KOG2312|consen 115 LSNDAYGFIVQGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLS 170 (847)
T ss_pred hchHHHHHHHhccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccc
Confidence 77667777777776666666666677777777666544333322345666666554
Done!