Query 039940
Match_columns 449
No_of_seqs 316 out of 2426
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 05:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 1.7E-56 6E-61 429.4 47.4 418 23-448 58-480 (510)
2 3tpo_A Importin subunit alpha- 100.0 3E-55 1E-59 423.4 48.0 419 22-448 76-499 (529)
3 4b8j_A Importin subunit alpha- 100.0 1.7E-49 5.8E-54 384.9 49.9 427 20-448 72-498 (528)
4 1wa5_B Importin alpha subunit; 100.0 1.9E-47 6.5E-52 370.3 50.3 425 20-448 85-512 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 1.7E-46 5.8E-51 357.3 46.5 423 23-448 21-445 (450)
6 3ul1_B Importin subunit alpha- 100.0 1.4E-42 4.8E-47 333.0 34.4 381 11-395 89-482 (510)
7 3tpo_A Importin subunit alpha- 100.0 3.3E-42 1.1E-46 332.4 37.1 382 10-395 107-501 (529)
8 3nmz_A APC variant protein; pr 100.0 9.4E-41 3.2E-45 309.5 29.0 376 12-394 22-453 (458)
9 3now_A UNC-45 protein, SD10334 100.0 5.1E-40 1.7E-44 321.1 30.5 369 21-397 376-788 (810)
10 1jdh_A Beta-catenin; beta-cate 100.0 3E-38 1E-42 306.7 38.7 405 17-444 96-528 (529)
11 1xm9_A Plakophilin 1; armadill 100.0 4.6E-39 1.6E-43 303.8 30.7 364 66-448 3-451 (457)
12 4b8j_A Importin subunit alpha- 100.0 1.8E-38 6.2E-43 307.6 34.9 378 13-395 108-500 (528)
13 3now_A UNC-45 protein, SD10334 100.0 3.3E-39 1.1E-43 315.4 29.4 407 19-445 328-781 (810)
14 1wa5_B Importin alpha subunit; 100.0 4.4E-38 1.5E-42 304.7 36.3 377 15-395 123-514 (530)
15 2z6h_A Catenin beta-1, beta-ca 100.0 4.9E-37 1.7E-41 303.7 42.6 402 18-442 94-523 (644)
16 2jdq_A Importin alpha-1 subuni 100.0 3.9E-38 1.3E-42 299.6 33.5 368 22-394 64-446 (450)
17 1xm9_A Plakophilin 1; armadill 100.0 2.7E-39 9.3E-44 305.4 22.6 364 23-394 3-452 (457)
18 3l6x_A Catenin delta-1; cateni 100.0 3.2E-38 1.1E-42 298.6 26.5 369 18-394 44-479 (584)
19 2z6g_A B-catenin; FULL-length, 100.0 1.9E-35 6.7E-40 296.4 42.5 406 18-446 230-663 (780)
20 3l6x_A Catenin delta-1; cateni 100.0 6.2E-36 2.1E-40 283.1 30.9 367 63-447 46-477 (584)
21 3nmz_A APC variant protein; pr 100.0 1.2E-36 4.1E-41 282.0 25.4 331 16-350 64-452 (458)
22 1jdh_A Beta-catenin; beta-cate 100.0 6.5E-36 2.2E-40 290.3 28.9 403 21-445 58-488 (529)
23 2z6h_A Catenin beta-1, beta-ca 100.0 1.1E-34 3.7E-39 286.9 31.9 404 21-446 55-486 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 3.2E-34 1.1E-38 287.7 31.2 403 21-445 191-621 (780)
25 3nmw_A APC variant protein; AR 100.0 3E-31 1E-35 239.0 24.4 277 119-397 43-340 (354)
26 3nmw_A APC variant protein; AR 100.0 1.1E-31 3.9E-36 241.8 21.0 268 80-350 46-336 (354)
27 4hxt_A De novo protein OR329; 100.0 7.1E-28 2.4E-32 210.3 23.2 240 65-307 2-242 (252)
28 4hxt_A De novo protein OR329; 100.0 1.3E-27 4.4E-32 208.7 23.2 241 108-350 2-243 (252)
29 4db8_A Armadillo-repeat protei 100.0 5.4E-28 1.9E-32 211.0 18.8 239 65-306 12-251 (252)
30 4db8_A Armadillo-repeat protei 100.0 1E-27 3.5E-32 209.2 18.6 240 21-263 11-251 (252)
31 1xqr_A HSPBP1 protein; armadil 99.9 2.7E-26 9.3E-31 201.2 21.1 234 206-448 54-289 (296)
32 3opb_A SWI5-dependent HO expre 99.9 6.5E-26 2.2E-30 217.5 25.2 417 5-446 238-728 (778)
33 3opb_A SWI5-dependent HO expre 99.9 2.4E-25 8.3E-30 213.6 26.1 389 21-429 295-759 (778)
34 4db6_A Armadillo repeat protei 99.9 2.8E-24 9.6E-29 181.9 23.5 199 191-391 11-209 (210)
35 4db6_A Armadillo repeat protei 99.9 2.7E-23 9.1E-28 175.8 20.8 199 148-348 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 2.5E-23 8.4E-28 182.5 17.2 227 164-392 53-288 (296)
37 3tt9_A Plakophilin-2; cell adh 99.9 2E-21 6.7E-26 162.7 14.5 197 66-264 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.9 4E-21 1.4E-25 160.9 13.1 197 22-222 8-230 (233)
39 4fdd_A Transportin-1; heat rep 99.8 3.3E-19 1.1E-23 182.3 21.7 360 19-395 87-475 (852)
40 1b3u_A Protein (protein phosph 99.8 1.5E-18 5E-23 170.4 23.8 344 21-391 163-509 (588)
41 1b3u_A Protein (protein phosph 99.8 1.4E-18 4.8E-23 170.6 22.6 383 21-445 202-586 (588)
42 3grl_A General vesicular trans 99.8 1.4E-16 4.8E-21 149.2 30.7 370 20-396 19-454 (651)
43 4fdd_A Transportin-1; heat rep 99.8 8.1E-18 2.8E-22 172.1 23.1 385 32-445 58-470 (852)
44 3grl_A General vesicular trans 99.8 6.5E-16 2.2E-20 144.8 33.6 413 21-447 59-551 (651)
45 2vgl_B AP-2 complex subunit be 99.7 2.3E-15 7.7E-20 146.9 31.6 341 23-395 50-423 (591)
46 1oyz_A Hypothetical protein YI 99.7 7.7E-16 2.6E-20 136.0 22.3 259 61-387 19-278 (280)
47 2vgl_B AP-2 complex subunit be 99.7 5.4E-16 1.8E-20 151.3 23.0 338 23-391 87-457 (591)
48 1oyz_A Hypothetical protein YI 99.7 1E-15 3.5E-20 135.2 20.3 256 20-344 21-278 (280)
49 2bpt_A Importin beta-1 subunit 99.7 4.9E-15 1.7E-19 152.1 23.6 358 21-395 323-715 (861)
50 2bpt_A Importin beta-1 subunit 99.7 3.8E-15 1.3E-19 152.9 21.8 400 23-444 370-809 (861)
51 1qgr_A Protein (importin beta 99.6 2.3E-14 7.8E-19 147.4 24.5 276 22-306 172-479 (876)
52 1qgr_A Protein (importin beta 99.6 3.3E-14 1.1E-18 146.2 24.6 402 22-444 321-825 (876)
53 1ibr_B P95, importin beta-1 su 99.6 2.9E-15 9.9E-20 142.4 15.0 362 21-395 34-441 (462)
54 1w63_A Adapter-related protein 99.6 8.2E-14 2.8E-18 136.3 24.4 290 21-349 106-415 (618)
55 1ibr_B P95, importin beta-1 su 99.6 1.6E-14 5.5E-19 137.3 18.5 387 24-445 3-436 (462)
56 1u6g_C TIP120 protein, CAND1; 99.6 2E-13 6.8E-18 145.1 27.1 357 22-393 6-405 (1230)
57 1w63_A Adapter-related protein 99.6 2.6E-13 9E-18 132.8 25.1 325 23-393 71-416 (618)
58 1u6g_C TIP120 protein, CAND1; 99.5 9E-13 3.1E-17 140.1 25.3 402 21-444 132-596 (1230)
59 3ltj_A Alpharep-4; protein eng 99.5 3.2E-12 1.1E-16 106.6 20.8 185 108-348 14-198 (201)
60 3ltm_A Alpha-REP4; protein eng 99.5 1.1E-12 3.9E-17 110.3 17.8 187 108-350 19-205 (211)
61 3ltm_A Alpha-REP4; protein eng 99.5 1.5E-12 5.1E-17 109.6 18.1 187 64-307 18-204 (211)
62 3ltj_A Alpharep-4; protein eng 99.5 1.4E-12 4.7E-17 108.8 16.9 185 21-262 13-197 (201)
63 2vgl_A Adaptor protein complex 99.5 2.6E-10 8.7E-15 111.3 32.8 333 23-393 75-435 (621)
64 2vgl_A Adaptor protein complex 99.3 1.3E-08 4.5E-13 99.2 35.0 299 65-392 74-399 (621)
65 2db0_A 253AA long hypothetical 99.3 1.5E-09 5.1E-14 83.6 18.8 218 106-349 30-247 (253)
66 3b2a_A TON_1937, putative unch 99.2 1.5E-09 5.1E-14 87.5 15.8 225 191-443 32-258 (265)
67 4ady_A RPN2, 26S proteasome re 99.1 5.1E-09 1.7E-13 103.5 22.1 307 22-387 392-715 (963)
68 4gmo_A Putative uncharacterize 99.1 3.1E-09 1.1E-13 105.1 17.9 219 61-305 31-257 (684)
69 4gmo_A Putative uncharacterize 99.1 6.5E-10 2.2E-14 109.9 12.1 197 191-392 34-259 (684)
70 3tjz_B Coatomer subunit gamma; 99.0 1.1E-08 3.7E-13 91.0 17.8 279 22-345 68-350 (355)
71 2db0_A 253AA long hypothetical 99.0 5.8E-08 2E-12 74.9 18.4 218 148-393 30-248 (253)
72 3tjz_B Coatomer subunit gamma; 99.0 1.6E-08 5.5E-13 89.9 16.0 277 109-441 69-348 (355)
73 1ho8_A Vacuolar ATP synthase s 98.9 5.7E-07 1.9E-11 81.8 24.9 322 106-444 75-474 (480)
74 2qk2_A LP04448P; mini spindles 98.9 6.1E-09 2.1E-13 89.3 11.5 187 110-306 17-205 (242)
75 4ady_A RPN2, 26S proteasome re 98.9 5.9E-07 2E-11 89.0 24.7 271 66-392 393-677 (963)
76 3b2a_A TON_1937, putative unch 98.9 1.4E-07 4.7E-12 76.2 16.4 188 22-223 33-220 (265)
77 2qk2_A LP04448P; mini spindles 98.9 1E-08 3.5E-13 87.9 10.8 186 154-350 19-207 (242)
78 2qk1_A Protein STU2; STU2P, XM 98.8 8.3E-08 2.8E-12 82.1 13.2 193 112-306 20-220 (249)
79 2qk1_A Protein STU2; STU2P, XM 98.7 8.7E-08 3E-12 81.9 11.4 192 155-349 21-221 (249)
80 2iw3_A Elongation factor 3A; a 98.7 4.8E-06 1.6E-10 83.6 23.4 315 13-348 5-324 (986)
81 1ho8_A Vacuolar ATP synthase s 98.6 2.4E-05 8.2E-10 71.3 24.2 324 64-392 76-477 (480)
82 1te4_A Conserved protein MTH18 98.6 1E-08 3.6E-13 78.4 1.4 120 233-388 11-130 (131)
83 1te4_A Conserved protein MTH18 98.6 1.8E-08 6.2E-13 77.1 2.3 121 64-219 11-131 (131)
84 1wa5_C Importin alpha RE-expor 98.6 0.00012 4E-09 75.8 31.1 349 21-392 84-526 (960)
85 1wa5_C Importin alpha RE-expor 98.5 3E-05 1E-09 80.2 25.1 389 21-446 34-525 (960)
86 3dad_A FH1/FH2 domain-containi 98.4 7.2E-06 2.5E-10 70.9 15.1 187 240-436 124-326 (339)
87 4hat_C Exportin-1; heat repeat 98.4 0.00017 6E-09 74.1 27.8 341 33-395 206-622 (1023)
88 2iw3_A Elongation factor 3A; a 98.4 3.2E-05 1.1E-09 77.8 21.0 299 70-395 19-328 (986)
89 2x1g_F Cadmus; transport prote 98.4 7E-05 2.4E-09 77.7 23.3 393 34-443 256-719 (971)
90 3dad_A FH1/FH2 domain-containi 98.3 1.8E-05 6.1E-10 68.4 14.3 186 194-380 120-325 (339)
91 2x1g_F Cadmus; transport prote 98.3 9.5E-05 3.2E-09 76.7 22.5 290 82-393 437-762 (971)
92 3m1i_C Exportin-1; heat repeat 98.3 0.0024 8.1E-08 66.8 32.2 358 22-395 138-573 (1049)
93 2x19_B Importin-13; nuclear tr 98.2 0.0005 1.7E-08 71.2 26.1 352 22-393 241-651 (963)
94 4hat_C Exportin-1; heat repeat 98.1 0.001 3.5E-08 68.5 26.2 357 22-395 138-573 (1023)
95 3m1i_C Exportin-1; heat repeat 98.1 0.0018 6.1E-08 67.6 27.3 341 34-394 207-621 (1049)
96 2x19_B Importin-13; nuclear tr 98.1 0.0015 5.2E-08 67.7 26.0 337 75-446 459-846 (963)
97 3ibv_A Exportin-T; karyopherin 97.9 0.0002 7E-09 73.5 15.7 307 77-395 205-570 (980)
98 3oc3_A Helicase MOT1, MOT1; re 97.7 0.00046 1.6E-08 63.5 13.3 261 15-344 169-432 (800)
99 3gjx_A Exportin-1; transport, 97.7 0.011 3.7E-07 60.9 23.8 311 71-396 212-600 (1073)
100 3ibv_A Exportin-T; karyopherin 97.6 0.00031 1.1E-08 72.1 11.6 304 33-351 204-569 (980)
101 3gjx_A Exportin-1; transport, 97.6 0.032 1.1E-06 57.5 26.0 296 33-351 218-598 (1073)
102 3c2g_A SYS-1 protein; beta-cat 97.6 0.0072 2.5E-07 52.1 17.3 292 133-444 267-616 (619)
103 4ffb_C Protein STU2; tubulin f 97.6 0.0015 5.1E-08 56.7 13.6 192 23-223 11-214 (278)
104 4ffb_C Protein STU2; tubulin f 97.5 0.0055 1.9E-07 53.1 17.0 187 239-445 14-211 (278)
105 1upk_A MO25 protein; transfera 97.5 0.022 7.7E-07 49.3 19.4 225 191-429 77-313 (341)
106 2fv2_A RCD1 required for cell 97.5 0.0081 2.8E-07 49.6 15.7 187 205-394 14-227 (268)
107 2of3_A ZYG-9; multifunctional 97.4 0.0012 4.1E-08 55.9 11.0 181 197-394 51-239 (266)
108 2of3_A ZYG-9; multifunctional 97.4 0.0028 9.6E-08 53.6 13.0 178 111-306 49-236 (266)
109 1upk_A MO25 protein; transfera 97.3 0.019 6.4E-07 49.8 17.2 201 103-306 73-283 (341)
110 3oc3_A Helicase MOT1, MOT1; re 97.1 0.0058 2E-07 56.5 11.6 246 109-387 175-432 (800)
111 2fv2_A RCD1 required for cell 97.0 0.065 2.2E-06 44.3 15.9 191 247-443 14-221 (268)
112 3l9t_A Putative uncharacterize 96.9 0.059 2E-06 44.2 15.2 144 67-232 73-218 (240)
113 3u0r_A Apoptosis inhibitor 5; 96.9 0.1 3.6E-06 47.5 18.0 249 119-394 39-301 (507)
114 3c2g_A SYS-1 protein; beta-cat 96.9 0.011 3.7E-07 51.1 10.9 157 216-374 266-450 (619)
115 1lrv_A LRV, leucine-rich repea 96.8 0.00034 1.2E-08 58.8 1.8 64 29-130 57-120 (244)
116 1lrv_A LRV, leucine-rich repea 96.8 0.00093 3.2E-08 56.2 4.0 88 72-214 57-144 (244)
117 2f31_A Diaphanous protein homo 96.6 0.076 2.6E-06 44.4 14.7 165 266-439 34-221 (233)
118 3l9t_A Putative uncharacterize 96.3 0.072 2.5E-06 43.7 11.8 143 154-317 74-218 (240)
119 3eg5_B Protein diaphanous homo 96.1 0.17 5.6E-06 45.8 14.7 163 266-437 100-285 (383)
120 2f31_A Diaphanous protein homo 96.1 0.22 7.6E-06 41.5 14.6 154 27-182 5-182 (233)
121 3u0r_A Apoptosis inhibitor 5; 95.8 1.1 3.8E-05 40.9 19.1 257 20-306 27-298 (507)
122 2bnx_A Diaphanous protein homo 95.7 0.58 2E-05 42.3 16.5 162 267-437 39-223 (386)
123 3eg5_B Protein diaphanous homo 95.6 0.66 2.2E-05 41.9 16.5 157 25-183 69-249 (383)
124 3ebb_A Phospholipase A2-activa 95.6 0.47 1.6E-05 41.2 15.0 173 67-245 105-287 (304)
125 3a6p_A Exportin-5; exportin-5, 95.4 0.64 2.2E-05 49.1 18.0 283 80-392 27-381 (1204)
126 3a6p_A Exportin-5; exportin-5, 95.3 3.5 0.00012 43.6 26.1 300 22-349 11-381 (1204)
127 3ebb_A Phospholipase A2-activa 95.3 0.16 5.5E-06 44.1 10.8 112 70-182 152-265 (304)
128 1lsh_A Lipovitellin (LV-1N, LV 95.1 1.7 5.7E-05 45.2 19.6 172 152-352 393-580 (1056)
129 2bnx_A Diaphanous protein homo 94.6 2.2 7.5E-05 38.5 16.7 155 27-183 9-187 (386)
130 1lsh_A Lipovitellin (LV-1N, LV 94.4 2.4 8.3E-05 44.0 18.7 167 109-308 392-578 (1056)
131 2npp_B PP2A, B subunit, serine 94.2 1.3 4.5E-05 40.5 14.3 237 99-353 153-403 (449)
132 3fga_B Serine/threonine-protei 94.2 1.4 4.9E-05 39.5 14.3 234 99-349 120-367 (403)
133 3ldz_A STAM-1, signal transduc 94.1 0.36 1.2E-05 36.4 8.9 76 320-395 43-118 (140)
134 3g2s_A C-terminal fragment of 93.6 0.49 1.7E-05 36.0 8.8 76 320-395 49-130 (149)
135 3qml_C Protein SLS1, nucleotid 93.3 0.64 2.2E-05 39.7 9.8 135 250-392 44-190 (315)
136 1mhq_A ADP-ribosylation factor 92.7 0.46 1.6E-05 36.2 7.5 75 320-394 39-119 (148)
137 1vdy_A Hypothetical protein (R 92.5 0.32 1.1E-05 36.4 6.2 75 363-449 50-133 (140)
138 1x5b_A Signal transducing adap 92.1 0.41 1.4E-05 37.2 6.7 76 320-395 53-129 (163)
139 1juq_A ADP-ribosylation factor 91.8 0.85 2.9E-05 35.7 8.2 76 320-395 51-132 (171)
140 1x5b_A Signal transducing adap 90.0 1.2 4.2E-05 34.5 7.5 70 363-444 53-123 (163)
141 3o2t_A Symplekin; heat repeat, 89.9 2.5 8.6E-05 37.8 10.4 140 293-445 41-182 (386)
142 3qml_C Protein SLS1, nucleotid 89.5 6.1 0.00021 33.8 11.8 149 194-348 24-189 (315)
143 3ldz_A STAM-1, signal transduc 89.1 1.2 4.2E-05 33.5 6.7 70 363-444 43-112 (140)
144 1juq_A ADP-ribosylation factor 88.6 2 6.8E-05 33.6 7.8 70 363-444 51-126 (171)
145 3g2s_A C-terminal fragment of 88.3 1.9 6.6E-05 32.7 7.4 70 363-444 49-124 (149)
146 1mhq_A ADP-ribosylation factor 88.2 1.8 6.2E-05 32.9 7.2 70 363-444 39-114 (148)
147 3o2t_A Symplekin; heat repeat, 88.1 14 0.00048 33.0 18.3 88 37-135 40-127 (386)
148 2npp_B PP2A, B subunit, serine 86.0 20 0.0007 32.7 15.7 263 39-315 134-408 (449)
149 3zyq_A Hepatocyte growth facto 85.2 2.2 7.7E-05 35.1 6.8 76 320-395 46-122 (226)
150 3fga_B Serine/threonine-protei 85.2 21 0.00071 32.1 13.7 256 40-308 102-368 (403)
151 3gs3_A Symplekin, LD45768P; he 85.1 16 0.00054 30.6 15.2 141 292-445 30-172 (257)
152 2jak_A Serine/threonine-protei 82.3 12 0.00042 33.4 10.6 192 101-300 167-361 (392)
153 1dvp_A HRS, hepatocyte growth 82.3 4.6 0.00016 33.1 7.5 69 363-443 43-112 (220)
154 3zyq_A Hepatocyte growth facto 82.2 4.4 0.00015 33.3 7.4 70 363-444 46-116 (226)
155 3gs3_A Symplekin, LD45768P; he 81.9 22 0.00074 29.8 22.3 89 36-135 29-117 (257)
156 1elk_A Target of MYB1; superhe 81.0 4 0.00014 31.3 6.3 74 320-393 54-132 (157)
157 1vdy_A Hypothetical protein (R 79.0 5.2 0.00018 29.8 6.0 75 320-394 50-133 (140)
158 1elk_A Target of MYB1; superhe 75.4 10 0.00036 29.0 7.1 70 363-444 54-128 (157)
159 1dvp_A HRS, hepatocyte growth 75.2 2.2 7.6E-05 35.0 3.5 75 21-95 41-115 (220)
160 1vsy_5 Proteasome activator BL 72.3 79 0.0027 32.6 14.5 188 151-348 134-365 (997)
161 1vsy_5 Proteasome activator BL 69.4 20 0.00068 36.9 9.5 187 109-306 134-365 (997)
162 3gae_A Protein DOA1; UFD3, CDC 68.8 6.7 0.00023 32.9 5.0 107 32-143 100-223 (253)
163 3ut4_A CTHE_2751, putative unc 66.2 12 0.0004 27.6 5.2 95 320-447 32-131 (134)
164 3pst_A Protein DOA1; protein d 65.7 7.8 0.00027 35.0 5.0 110 30-144 270-396 (425)
165 2xpp_A IWS1, ECU08_0440; trans 63.0 35 0.0012 25.5 7.4 75 353-444 52-134 (145)
166 2b6c_A Hypothetical protein EF 62.1 55 0.0019 26.5 9.3 134 161-317 65-199 (220)
167 3rru_A TOM1L1 protein; structu 61.5 12 0.00042 28.3 4.8 75 320-394 54-133 (152)
168 3l3f_X Protein DOA1, DOA1/UFD3 59.4 8 0.00027 34.2 3.9 108 31-143 208-332 (362)
169 3jxy_A Alkylpurine DNA glycosy 57.2 79 0.0027 25.8 10.1 140 195-361 64-207 (232)
170 2b6c_A Hypothetical protein EF 57.1 76 0.0026 25.7 10.4 139 195-360 58-199 (220)
171 3gae_A Protein DOA1; UFD3, CDC 55.6 58 0.002 27.2 8.4 133 83-222 71-218 (253)
172 2jak_A Serine/threonine-protei 53.5 1E+02 0.0036 27.5 10.0 184 191-386 173-362 (392)
173 3pst_A Protein DOA1; protein d 51.6 37 0.0013 30.7 6.9 131 83-224 243-392 (425)
174 3l3f_X Protein DOA1, DOA1/UFD3 46.5 34 0.0011 30.3 5.7 131 83-224 180-329 (362)
175 1wjt_A Transcription elongatio 44.0 41 0.0014 23.4 4.8 35 410-444 47-82 (103)
176 3jxy_A Alkylpurine DNA glycosy 44.0 1.2E+02 0.0042 24.7 8.6 141 155-318 65-207 (232)
177 3vld_A DNA mismatch repair pro 42.7 2.1E+02 0.0071 26.5 13.1 183 191-392 30-226 (500)
178 1w9c_A CRM1 protein, exportin 42.0 1.7E+02 0.0058 25.3 14.8 138 250-395 45-200 (321)
179 3rru_A TOM1L1 protein; structu 41.8 46 0.0016 25.2 5.2 70 363-444 54-128 (152)
180 3nfq_A Transcription factor IW 38.9 1E+02 0.0036 23.7 6.7 75 353-444 67-149 (170)
181 3s4w_B Protein FACD2, fanconi 35.9 4.3E+02 0.015 28.2 18.6 264 67-348 194-507 (1323)
182 4atg_A TAF6; transcription, TF 34.9 1.5E+02 0.005 23.6 7.2 112 108-220 40-161 (196)
183 1vsy_4 Proteasome activator BL 29.4 2.4E+02 0.0082 28.2 9.3 111 109-220 340-454 (799)
184 4dvg_B Diaphanous protein; cyt 27.4 2.2E+02 0.0075 22.2 14.0 67 279-348 69-143 (353)
185 1zoq_C CREB-binding protein, i 21.6 1.2E+02 0.0041 17.1 3.1 35 67-105 3-37 (47)
186 1sz9_A PCF11 protein; RNA poly 20.6 2.6E+02 0.009 20.7 6.6 89 290-389 24-112 (144)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.7e-56 Score=429.39 Aligned_cols=418 Identities=46% Similarity=0.767 Sum_probs=390.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK 102 (449)
Q Consensus 23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 102 (449)
.++.+++.++|+|++.|+.|+..++++++.+..++++.+++.|++|.|+++|++.+.+++|..|+|+|+|++.++++.+.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 48999999999999999999999999999887889999999999999999998776689999999999999999999999
Q ss_pred HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc----cHHHHHHHHHHHHHh
Q 039940 103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA----RLSMLRIGTWTLSNL 178 (449)
Q Consensus 103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~l~~l 178 (449)
.+++.|++|.|+.+|.+++.++++.|+|+|+|++.+++..+..+.+.|++++++.++.... ...+++.++|++.++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995322 345788999999999
Q ss_pred hcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940 179 CKGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257 (449)
Q Consensus 179 ~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 257 (449)
+.+. +........+++|.|+.++.+++++++..++++|.+++...++..+.+.+.|+++.|+.++.+++..++..++++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 9987 555666678999999999999999999999999999999988888888999999999999999999999999999
Q ss_pred HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHH
Q 039940 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKK 337 (449)
Q Consensus 258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~ 337 (449)
++|++.+++.....+++.|+++.|+.++.++ +..+++.|+|+|+|++.+++..+..+.+.|+++.|+.++.+++.+++.
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 376 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 376 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcc
Q 039940 338 EAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAE 417 (449)
Q Consensus 338 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (449)
.|+|+|+|++..++.+++.++++.|+++.|++++++.|++++..++++|.++++..++.. ..+.+...|+++|
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~g 449 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECG 449 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------chHHHHHHHHHcC
Confidence 999999999999899999999999999999999999999999999999999999887643 4667899999999
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940 418 GFKKIEDLKSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 418 ~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
|+++|+.|+.|+|++|+++|..+|++||+.|
T Consensus 450 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 450 GLDKIEALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999999999999999999999999864
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3e-55 Score=423.38 Aligned_cols=419 Identities=46% Similarity=0.758 Sum_probs=390.8
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
..++.+++.+.|+|++.++.|+..++++++.+..++.+.+++.|++|.|+++|...+.++++..|+|+|+|++.++++.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 46899999999999999999999999999888788899999999999999999877668999999999999999999999
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc----cHHHHHHHHHHHHH
Q 039940 102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA----RLSMLRIGTWTLSN 177 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~l~~ 177 (449)
..+++.|++|.|+.++.+++..+++.|+|+|+|++.+++..+..+.+.|++++++.++.... ...+++.++|++.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995322 34578899999999
Q ss_pred hhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHH
Q 039940 178 LCKGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALR 256 (449)
Q Consensus 178 l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~ 256 (449)
++.+. +........+++|.|+.++.+++++++..++|+|.+++.+.++..+.+.+.|+++.|+.++.++++.++..++.
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~ 315 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence 99987 55566677899999999999999999999999999999999888888999999999999999999999999999
Q ss_pred HHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHH
Q 039940 257 TVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIK 336 (449)
Q Consensus 257 ~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~ 336 (449)
+|+|++.+++.....+++.|+++.|+.++.++ ++.++++|+|+|+|++.+++.....+.+.|+++.|+.++.+++.+++
T Consensus 316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhc
Q 039940 337 KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA 416 (449)
Q Consensus 337 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (449)
..|+|+|+|++.+++.++..++++.|+++.|+++|++.|++++..++++|.++++..+... ..+.+...|+++
T Consensus 395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ 467 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEEC 467 (529)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHC
Confidence 9999999999998899999999999999999999999999999999999999999887643 356789999999
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940 417 EGFKKIEDLKSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 417 ~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
||+++|+.|+.|+|++|+++|.+||++||+.|
T Consensus 468 ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 468 GGLDKIEALQRHENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp TCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999854
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.7e-49 Score=384.90 Aligned_cols=427 Identities=75% Similarity=1.183 Sum_probs=393.2
Q ss_pred hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
....+|.+++.|.++++.++..|++.|+++++....+....++..|++|.|+++|.+++++.++..|+++|++++.++++
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 45679999999999999999999999999988765578899999999999999999886589999999999999998899
Q ss_pred hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940 100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~ 179 (449)
.+..+++.|+++.|+.+|.++++.++..|+|+|++++.+.+..+..+...|+++.++.++..+.++.++..++|+|.+++
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999977788999999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940 180 KGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG 259 (449)
Q Consensus 180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~ 259 (449)
...+........++++.|+.++.+++++++..++++|.+++...+...+.+.+.|+++.|+.+|.++++.++..|+++|+
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 99877777778999999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHH
Q 039940 260 NIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEA 339 (449)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a 339 (449)
+++.+++...+.+++.|+++.|+.+|.++.++.++..|+|+|+|++.++++.+..+++.|+++.|+.++.++++.++..|
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 391 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 99999888888899999999999999876578899999999999999888888899999999999999999999999999
Q ss_pred HHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchH
Q 039940 340 AWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGF 419 (449)
Q Consensus 340 ~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (449)
+++|++++..++++...++.+.|+++.|+.++.+.+++++..++++|.+++...+....... ...+.+...+.+.|++
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~ 469 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGL 469 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcH
Confidence 99999999987889999999999999999999999999999999999999998876432110 1355789999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940 420 KKIEDLKSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 420 ~~l~~l~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
+.|..++.|++++++++|..++++||+.|
T Consensus 470 ~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 470 EKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999875
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.9e-47 Score=370.35 Aligned_cols=425 Identities=53% Similarity=0.816 Sum_probs=388.4
Q ss_pred hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
..+.++.+++.|+++++.++..|+..|.++++....+....++..|++|.|+++|.++++++++..|+++|++++.++++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 34679999999999999999999999999987654567788899999999999999983389999999999999998888
Q ss_pred hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940 100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~ 179 (449)
.+..+++.|+++.|+.+|.++++.+++.|+|+|++++...+..+..+...|+++.++.++ .+.++.++..++|+|.+++
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999888888888999999999999 5588999999999999999
Q ss_pred cCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 180 KGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 180 ~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
... +........++++.|+.++.++++.++..++++|.+++...+.....+.+.|+++.|+.++.++++.++..|+++|
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence 887 6667777799999999999999999999999999999998887778888899999999999999999999999999
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHH
Q 039940 259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKE 338 (449)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~ 338 (449)
++++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++.+..+++.|+++.|+.++.+++++++..
T Consensus 324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 402 (530)
T 1wa5_B 324 GNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 402 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 999998888888888999999999999999 9999999999999999988888888899999999999999999999999
Q ss_pred HHHHHHHhhccCCH--HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhc
Q 039940 339 AAWAISNATKAGTQ--EQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA 416 (449)
Q Consensus 339 a~~aL~~l~~~~~~--~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (449)
|+++|++++..+++ +..+.+.+.|+++.|+.++.+.+++++..++++|.+++...+....... +..+.+...+.+.
T Consensus 403 a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~ 480 (530)
T 1wa5_B 403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG--LNINENADFIEKA 480 (530)
T ss_dssp HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccc--ccccHHHHHHHHc
Confidence 99999999997666 7888999999999999999999999999999999999998876421000 1245789999999
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940 417 EGFKKIEDLKSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 417 ~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
||++.|..|+.|++++++++|..++++||..|
T Consensus 481 g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 481 GGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp THHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 99999999999999999999999999999865
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.7e-46 Score=357.31 Aligned_cols=423 Identities=56% Similarity=0.889 Sum_probs=383.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA-GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
.++.+++.++++++.++..|+..|+++++....+....++.. |+++.|+++++++++++++..|+++|.+++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 589999999999999999999999998764435666778887 9999999999998338999999999999999888888
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940 102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 181 (449)
..+.+.|+++.|+.++.++++.+++.|+++|++++...+..+..+.+.|+++.++.++..+.+..++..++|++.+++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88889999999999999999999999999999999998888888889999999999995567899999999999999987
Q ss_pred C-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 039940 182 K-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260 (449)
Q Consensus 182 ~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~ 260 (449)
. +........+++|.++.++.++++.++..++++|.+++...++....+.+.|+++.++.++.++++.++..|+++|++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 6 555556668999999999999999999999999999999887777778888999999999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHH
Q 039940 261 IVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAA 340 (449)
Q Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~ 340 (449)
++.+.+...+.+.+.|+++.|+.++.++ ++.++..|+++|+|++.++++....+++.|+++.|+.++.+++++++..|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9998888888888999999999999998 999999999999999998888888888999999999999999999999999
Q ss_pred HHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHH
Q 039940 341 WAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFK 420 (449)
Q Consensus 341 ~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (449)
++|++++..++++..+.+++.|+++.|+.++++++++++..++++|.+++...+.....+. ...++|...+.+.||++
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~ 417 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG--TGINPYCALIEEAYGLD 417 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC--SCCCHHHHHHHHHHCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc--cchhHHHHHHHHcCcHH
Confidence 9999999877788889899999999999999999999999999999999998775422100 12457899999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 039940 421 KIEDLKSHGNNGIREKAVTILETYWLKG 448 (449)
Q Consensus 421 ~l~~l~~~~~~~i~~~a~~~i~~~~~~~ 448 (449)
.|..+++++++++++.|..++++||+.|
T Consensus 418 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 418 KIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 9999999999999999999999999876
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.4e-42 Score=332.97 Aligned_cols=381 Identities=27% Similarity=0.408 Sum_probs=336.7
Q ss_pred CCCCchhhHhhhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 039940 11 PAPSLNLQTKLEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWV 89 (449)
Q Consensus 11 ~~~~~~~~~~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~ 89 (449)
.-|+.+...+.|++|.|+++|++ +++.+|..|+++|.++++++ .+....+++.|++|.|+.+|.+++ .++++.|+++
T Consensus 89 ~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~a 166 (510)
T 3ul1_B 89 KQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWA 166 (510)
T ss_dssp SCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHH
T ss_pred CCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHH
Confidence 44566778889999999999975 56899999999999999876 677888999999999999999999 8999999999
Q ss_pred HHHhcCCChhhhHHHHhCCChHHHHHhhCCCC-----hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccccc
Q 039940 90 LTNIASGTSVNTKVLIDHGAVPIFVKLLASPS-----DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHAR 164 (449)
Q Consensus 90 L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~ 164 (449)
|+|++.++++.+..+.+.|+++.|+.++.+++ ..+...++|++++++.............++++.++.++ .+.+
T Consensus 167 L~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~ 245 (510)
T 3ul1_B 167 LGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHND 245 (510)
T ss_dssp HHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSC
T ss_pred HHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCC
Confidence 99999988999999999999999999998754 45778899999999987755555555678899999988 7889
Q ss_pred HHHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh
Q 039940 165 LSMLRIGTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL 243 (449)
Q Consensus 165 ~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll 243 (449)
++++..++|+|.+++...... ......++++.|+.++.+++..++..++++++|++..++.....+.+.|+++.|+.++
T Consensus 246 ~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL 325 (510)
T 3ul1_B 246 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325 (510)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CT
T ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHh
Confidence 999999999999999876332 2334478999999999999999999999999999999998888899999999999999
Q ss_pred CCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChH
Q 039940 244 GHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIV 322 (449)
Q Consensus 244 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~ 322 (449)
.++++.++..|+|+|+|++.++......+.+.|+++.|+.++.++ +..++++|+|+|+|++. ++++.+..+++.|+++
T Consensus 326 ~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~ 404 (510)
T 3ul1_B 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 404 (510)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999 99999999999999997 6788888999999999
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHhhccC----CHH-HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 323 PLVNLLQDAEFDIKKEAAWAISNATKAG----TQE-QIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 323 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~----~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
.|+++|...+++++..++++|.|+...+ ..+ ....+.+.|+++.|..+..+++.++++.|..+|.++|...+.
T Consensus 405 ~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 482 (510)
T 3ul1_B 405 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 482 (510)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 9999999999999999999999998632 233 344556789999999999999999999999999999975543
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.3e-42 Score=332.36 Aligned_cols=382 Identities=26% Similarity=0.409 Sum_probs=337.0
Q ss_pred CCCCCchhhHhhhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHH
Q 039940 10 APAPSLNLQTKLEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAW 88 (449)
Q Consensus 10 ~~~~~~~~~~~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~ 88 (449)
...|+.+...+.|++|.|+++|.+ +++.++..|+++|.++++++ ......+++.|++|.|+.++.+++ .+++..|++
T Consensus 107 ~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~ 184 (529)
T 3tpo_A 107 EKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVW 184 (529)
T ss_dssp SSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHH
T ss_pred CCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHH
Confidence 344566788899999999999975 66999999999999999875 566788999999999999999999 899999999
Q ss_pred HHHHhcCCChhhhHHHHhCCChHHHHHhhCCCC-----hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccc
Q 039940 89 VLTNIASGTSVNTKVLIDHGAVPIFVKLLASPS-----DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHA 163 (449)
Q Consensus 89 ~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~ 163 (449)
+|+|++.++++.+..+.+.|+++.|+.++..++ ..+...++|++++++.............++++.|+.++ .+.
T Consensus 185 aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~ 263 (529)
T 3tpo_A 185 ALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHN 263 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSS
T ss_pred HHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCC
Confidence 999999988999999999999999999998644 45778899999999987755555555678899999988 788
Q ss_pred cHHHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh
Q 039940 164 RLSMLRIGTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL 242 (449)
Q Consensus 164 ~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l 242 (449)
+++++..++|+|.+++...... ......++++.|+.++.+++..++..++++++|++.+++.....+.+.|+++.|+.+
T Consensus 264 ~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~L 343 (529)
T 3tpo_A 264 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 343 (529)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHH
Confidence 9999999999999999876332 233447899999999999999999999999999999998888889999999999999
Q ss_pred hCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCCh
Q 039940 243 LGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLI 321 (449)
Q Consensus 243 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~ 321 (449)
+.++++.++..|+|+|+|++.+++.....+.+.|+++.|+.++.++ +..++.+|+|+|+|++. ++++.+..+++.|++
T Consensus 344 L~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i 422 (529)
T 3tpo_A 344 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGII 422 (529)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCH
T ss_pred HcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCH
Confidence 9999999999999999999999999999999999999999999999 99999999999999986 678888899999999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhcc----CCHH-HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 322 VPLVNLLQDAEFDIKKEAAWAISNATKA----GTQE-QIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 322 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~----~~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
+.|+++|...+++++..++++|.++... +..+ ....+.+.|+++.|..+..+++.++++.|..+|.++|...+.
T Consensus 423 ~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 501 (529)
T 3tpo_A 423 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 501 (529)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 9999999999999999999999999853 2233 344556789999999999999999999999999999975543
No 8
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=9.4e-41 Score=309.50 Aligned_cols=376 Identities=17% Similarity=0.177 Sum_probs=297.3
Q ss_pred CCCchhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCC-----------H
Q 039940 12 APSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDY-----------P 80 (449)
Q Consensus 12 ~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-----------~ 80 (449)
.+.+....+.+.++.++..+.+.|+. ...+.|..+... .+.+..+++.|++|.|+++|+..+. +
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~ 96 (458)
T 3nmz_A 22 RLTSHLGTKVEMVYSLLSMLGTHDKD---DMSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSK 96 (458)
T ss_dssp -----------------------CCH---HHHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCH
T ss_pred CcccccCchHHHHHHHHHHhcCCCHH---HHHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCH
Confidence 34467888999999999999988876 255666666543 4555889999999999999997542 6
Q ss_pred HHHHHHHHHHHHhcCCChhhhHHHHhCCCh----------HHHHHhhCCCC--hH-----HHH-------HHHHHHHHHh
Q 039940 81 RLQFEAAWVLTNIASGTSVNTKVLIDHGAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNIV 136 (449)
Q Consensus 81 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i----------~~L~~~l~~~~--~~-----~~~-------~a~~~L~~l~ 136 (449)
+++..|+|+|.||+.+.++......+.+++ +.+++++.+.. .+ +++ +|+|+|+|++
T Consensus 97 ~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls 176 (458)
T 3nmz_A 97 EARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLS 176 (458)
T ss_dssp HHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhc
Confidence 999999999999999888888887777777 66777776542 22 444 8999999996
Q ss_pred cCCCchhhhHhhcCCHHHHHHHHcc----------cccHHHHHHHHHHHHHhhcCCCCCChhh--hhchHHHHHHhhcCC
Q 039940 137 AHSPGCRNLVLHEEALIPLLAQLNE----------HARLSMLRIGTWTLSNLCKGKPQPPFDQ--VRPVLPALAQLIHLD 204 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~l~~ll~~~ 204 (449)
.+ +++|+.+.+.|++++|+.++.. +.++.+++.|+|+|.|++.+.+...... ..|++|.|+.+|.++
T Consensus 177 ~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~ 255 (458)
T 3nmz_A 177 FD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 255 (458)
T ss_dssp TS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS
T ss_pred CC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC
Confidence 65 7899999999999999999942 2357799999999999998864332222 366799999999999
Q ss_pred CHHHHHHHHHHHHHcccC-ChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHHHHHhhcCChhhHHHHH-hcCCHHHH
Q 039940 205 DEEVLRNVCWTLSNLSDG-TNDKIQAVIEAGVCGPLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCVI-NHGAVPYL 281 (449)
Q Consensus 205 ~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L 281 (449)
+++++..++|+|.|++.. ++.....+.+.|+++.|+.+| .++++.++..|+.+|+|++.++++....+. ..|+++.|
T Consensus 256 ~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~L 335 (458)
T 3nmz_A 256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335 (458)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHH
Confidence 999999999999999985 566777788999999999975 556788999999999999986566666666 79999999
Q ss_pred HHHhccCCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHH
Q 039940 282 LALLINNHKK---SIKKESCWTVSNITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQI 355 (449)
Q Consensus 282 ~~ll~~~~~~---~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 355 (449)
+.+|.++.+. .+++.|+|+|.|++. ++++.+..+.+.|+++.|+.+|.+++..++++|+++|.|++.. +++++
T Consensus 336 v~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~ 414 (458)
T 3nmz_A 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQ 414 (458)
T ss_dssp HHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHH
Confidence 9999877222 499999999999996 7889999999999999999999999999999999999999875 78899
Q ss_pred HHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940 356 KYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 356 ~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
..+.+.|+++.|+++++++++.+++.|+++|.+|+...+
T Consensus 415 ~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 415 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999997653
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=5.1e-40 Score=321.07 Aligned_cols=369 Identities=16% Similarity=0.129 Sum_probs=319.3
Q ss_pred hhcHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940 21 LEILPAMVAGVWSD--DNSMQLEAATQFRRLLSIERSLPIDEVI-QAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT 97 (449)
Q Consensus 21 ~~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 97 (449)
.+.++.++++|.++ |++++..|++.|..++.+ .+....++ +.|++|.|++++++++ ..++..|+++|+|++.++
T Consensus 376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCc
Confidence 34577888898887 899999999999999654 34445555 5799999999999988 899999999999999854
Q ss_pred hh-----------------------------h---hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhh
Q 039940 98 SV-----------------------------N---TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNL 145 (449)
Q Consensus 98 ~~-----------------------------~---~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 145 (449)
++ . .+.+++.|++|.|+.++.++++.+++.|+|+|+|++.+ +.++..
T Consensus 453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~ 531 (810)
T 3now_A 453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGK 531 (810)
T ss_dssp CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 21 1 26788999999999999999999999999999999965 568999
Q ss_pred HhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC-CCCCh--hhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHccc
Q 039940 146 VLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPPF--DQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSD 221 (449)
Q Consensus 146 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~--~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~ 221 (449)
+.+.|++++|+.++ .+.++..++.|+|+|.+++... +...+ ....+++|.|+.+|.++. ...+..++++|.|++.
T Consensus 532 Vv~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~ 610 (810)
T 3now_A 532 VVQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS 610 (810)
T ss_dssp HHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 99999999999999 6777889999999999999764 21111 123568999999998663 3445689999999999
Q ss_pred CChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHHhccCCchhHHHHHHHH
Q 039940 222 GTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN-HGAVPYLLALLINNHKKSIKKESCWT 300 (449)
Q Consensus 222 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~ 300 (449)
.+++..+.+++.|+++.|+.++.++++.++..|+++++|++.+.+ ....+.+ .|.++.|+.++.++ +..++++|+|+
T Consensus 611 ~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~A 688 (810)
T 3now_A 611 MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDE-DEETATACAGA 688 (810)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHH
Confidence 988888889999999999999999999999999999999998754 4455555 78999999999998 99999999999
Q ss_pred HHHHhcCCHHHHHHHHH-CCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC---CH
Q 039940 301 VSNITAGNRKQIQAVID-AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA---DP 376 (449)
Q Consensus 301 l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~---~~ 376 (449)
|+|++.+++..++.+++ .|+++.|++++.+++.+++..|+|++.|++.+ +++..+++.+.|+++.|+.+++.. ++
T Consensus 689 LanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~ 767 (810)
T 3now_A 689 LAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRA 767 (810)
T ss_dssp HHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTH
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcH
Confidence 99999988888889998 89999999999999999999999999999985 678899999999999999999754 78
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 039940 377 EIVTVCLKGLENILKVGEAKK 397 (449)
Q Consensus 377 ~~~~~~~~~l~~l~~~~~~~~ 397 (449)
++++.++++|.++.+.+.-..
T Consensus 768 ~i~e~Al~aL~~ll~~g~~~~ 788 (810)
T 3now_A 768 KAREVATQCLAAAERYRIIER 788 (810)
T ss_dssp HHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhCCCccC
Confidence 999999999999999886543
No 10
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=3e-38 Score=306.70 Aligned_cols=405 Identities=18% Similarity=0.185 Sum_probs=344.7
Q ss_pred hhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCC
Q 039940 17 LQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASG 96 (449)
Q Consensus 17 ~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 96 (449)
...+.|++|.++++|+++++.++..|+++|.+++... ......+.+.|++|.|++++++++ .+++..++.+|.+++.+
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhC
Confidence 3446789999999999999999999999999998764 456777788999999999999988 89999999999999998
Q ss_pred ChhhhHHHHhCCChHHHHHhhCCC-ChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHH
Q 039940 97 TSVNTKVLIDHGAVPIFVKLLASP-SDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTL 175 (449)
Q Consensus 97 ~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l 175 (449)
+++.+..+.+.|+++.|+.++.+. ....+..++.+|.+++. .+..+..+.+.|+++.++.++ .+.++.+++.++|++
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L 251 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTL 251 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHH
Confidence 899999999999999999999864 46677788999999986 456778888899999999999 666899999999999
Q ss_pred HHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhh
Q 039940 176 SNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLIP 253 (449)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~ 253 (449)
.+++...+... ...+++|.++.++.+++++++..++++|++++.++++....+.+.|+++.|+.++.+ ++++++..
T Consensus 252 ~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~ 329 (529)
T 1jdh_A 252 RNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 329 (529)
T ss_dssp HHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHH
Confidence 99998864332 346899999999999999999999999999999888788889999999999999976 33689999
Q ss_pred HHHHHHHhhcCChh---hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc
Q 039940 254 ALRTVGNIVTGDDF---QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD 330 (449)
Q Consensus 254 a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~ 330 (449)
++++|++++..++. ....+.+.|+++.|+.++.++.++.++..++|+++|++.++. ....+.+.|+++.|++++.+
T Consensus 330 a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~ 408 (529)
T 1jdh_A 330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVR 408 (529)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHH
Confidence 99999999886543 355778899999999999988346899999999999988644 44678899999999999998
Q ss_pred CchhHHHHHHHHHHH----------------------hhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHH
Q 039940 331 AEFDIKKEAAWAISN----------------------ATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLEN 388 (449)
Q Consensus 331 ~~~~v~~~a~~aL~~----------------------l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~ 388 (449)
+++++|..|+|++.| ++. .++.+..+.+.|+++.|+.++.+++++++..+.++|.+
T Consensus 409 ~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~ 486 (529)
T 1jdh_A 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 486 (529)
T ss_dssp HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHH
Confidence 888888877766665 444 35666778899999999999999999999999999999
Q ss_pred HHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 039940 389 ILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETY 444 (449)
Q Consensus 389 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~ 444 (449)
+.... .+...+.+.|+++.|..++.++++++++.|..+++++
T Consensus 487 l~~~~--------------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 487 LAQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HTTSH--------------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HhcCH--------------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 87432 2478889999999999999999999999999999875
No 11
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.6e-39 Score=303.80 Aligned_cols=364 Identities=18% Similarity=0.195 Sum_probs=307.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhh
Q 039940 66 IVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNL 145 (449)
Q Consensus 66 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 145 (449)
.+|.|+.+|++++ ++++..|+++|.+++.+++..+..+.+.|++|.|+++|.++++.++..|+|+|.|++.+++..+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4899999999998 799999999999999877788889999999999999999999999999999999999988889999
Q ss_pred HhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--------C--------CCHHHH
Q 039940 146 VLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH--------L--------DDEEVL 209 (449)
Q Consensus 146 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~--------~--------~~~~~~ 209 (449)
+.+.|+++.++.+|..+.++++++.++|+|.|++..+..+..... |++|.|+.++. + .+.++.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999995478899999999999999998543333444 99999999993 2 246777
Q ss_pred HHHHHHHHHcccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcCC-----------------
Q 039940 210 RNVCWTLSNLSDGTNDKIQAVIEA-GVCGPLVELLGH------PSPSVLIPALRTVGNIVTGD----------------- 265 (449)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~----------------- 265 (449)
..++|+|+|++.. ++..+.+.+. |+++.|+.++.+ .+..+...++.++.+++...
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 6677778887 999999999975 45678888999999987321
Q ss_pred ---------------------------------hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH--
Q 039940 266 ---------------------------------DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK-- 310 (449)
Q Consensus 266 ---------------------------------~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-- 310 (449)
+...+.+++.++++.|+.+|.++.++.+++.|+|+|+|++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 112233445677899999998775789999999999999985432
Q ss_pred -HH-HHHH-HCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCH------HHHHH
Q 039940 311 -QI-QAVI-DAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADP------EIVTV 381 (449)
Q Consensus 311 -~~-~~l~-~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~------~~~~~ 381 (449)
.. +..+ +.|++|.|++++.+++.++++.|+|+|.|++.+ + ..+.++..|+++.|+++|...++ ++...
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 22 3344 689999999999999999999999999999884 2 34556677899999999998643 68889
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCC
Q 039940 382 CLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHG-NNGIREKAVTILETYWLKG 448 (449)
Q Consensus 382 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~i~~~a~~~i~~~~~~~ 448 (449)
++++|.+++...+. +...+.+.||++.|.+|+.++ ++++++.|..+|++||...
T Consensus 397 ~l~~l~ni~~~~~~-------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHhcCHH-------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 99999999865432 478889999999999999999 9999999999999999754
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.8e-38 Score=307.56 Aligned_cols=378 Identities=26% Similarity=0.328 Sum_probs=334.6
Q ss_pred CCchhhHhhhcHHHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 039940 13 PSLNLQTKLEILPAMVAGVWSDD-NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLT 91 (449)
Q Consensus 13 ~~~~~~~~~~~i~~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~ 91 (449)
++.....+.|++|.++++|.+++ +.++..|+++|.+++.+. ......++..|+++.|+.+|.+++ ++++..|+++|+
T Consensus 108 ~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~ 185 (528)
T 4b8j_A 108 PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALG 185 (528)
T ss_dssp CCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred chHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 34455667899999999999876 999999999999998764 566778889999999999999988 899999999999
Q ss_pred HhcCCChhhhHHHHhCCChHHHHHhh-CCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHH
Q 039940 92 NIASGTSVNTKVLIDHGAVPIFVKLL-ASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRI 170 (449)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~ 170 (449)
+++.+++..+..+...|+++.|+.++ .+.+..++..++|+|++++...+.... ....++++.++.++ .+.++.++..
T Consensus 186 ~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL-~~~~~~v~~~ 263 (528)
T 4b8j_A 186 NVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF-EQTRPALPALARLI-HSNDEEVLTD 263 (528)
T ss_dssp HHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH-HHHTTHHHHHHHHT-TCCCHHHHHH
T ss_pred HHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHHH-CCCCHHHHHH
Confidence 99998888999999999999999999 568899999999999999987654433 34578999999999 7789999999
Q ss_pred HHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-CC
Q 039940 171 GTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SP 248 (449)
Q Consensus 171 a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~ 248 (449)
++|+|.+++...+.. ......++++.++.++.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++
T Consensus 264 a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 343 (528)
T 4b8j_A 264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK 343 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcH
Confidence 999999999875322 2333468999999999999999999999999999998888888899999999999999998 89
Q ss_pred cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHH
Q 039940 249 SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNL 327 (449)
Q Consensus 249 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~l 327 (449)
.++..|+++|+|++.+++.....+++.++++.|+.++.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.+
T Consensus 344 ~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l 422 (528)
T 4b8j_A 344 SIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 422 (528)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999998888888889999999999999999 999999999999999974 78888899999999999999
Q ss_pred hhcCchhHHHHHHHHHHHhhccCCH----------HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 328 LQDAEFDIKKEAAWAISNATKAGTQ----------EQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 328 l~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
+..++++++..++++|.+++..+.. .....+.+.|+++.|..+.++.+++++..|..++.+++...+.
T Consensus 423 L~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~ 500 (528)
T 4b8j_A 423 LICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED 500 (528)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 9999999999999999999976322 2466777899999999999999999999999999999976544
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-39 Score=315.41 Aligned_cols=407 Identities=14% Similarity=0.120 Sum_probs=336.9
Q ss_pred HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHc----CCHHHHHHhhcCC--CCHHHHHHHHHHHHH
Q 039940 19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA----GIVPRFVEFLLRE--DYPRLQFEAAWVLTN 92 (449)
Q Consensus 19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~----~~i~~L~~ll~~~--~~~~~~~~a~~~L~~ 92 (449)
.+.| +|.|+.++++++..++..|+.+|+++.+....++....+.. .+++.++++|.++ + .+++..|+++|.+
T Consensus 328 ~~~g-v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLay 405 (810)
T 3now_A 328 CEQG-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAY 405 (810)
T ss_dssp HHHH-HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHH
T ss_pred HHcC-cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHH
Confidence 3445 49999999999999999999999999753211111111222 3367788888888 5 7999999999999
Q ss_pred hcCCChhhhHHHH-hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc-----------------------------h
Q 039940 93 IASGTSVNTKVLI-DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG-----------------------------C 142 (449)
Q Consensus 93 l~~~~~~~~~~~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~-----------------------------~ 142 (449)
++. .++.+..++ +.|++|.|+.++.+++..++..++|+|+|++.+.+. .
T Consensus 406 LS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v 484 (810)
T 3now_A 406 LTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFI 484 (810)
T ss_dssp HTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHH
T ss_pred HhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHH
Confidence 998 566666666 569999999999999999999999999999975421 1
Q ss_pred h---hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHc
Q 039940 143 R---NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNL 219 (449)
Q Consensus 143 ~---~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l 219 (449)
+ +.+.+.|+++.|+.++ .++++.+++.++|+|.|++.+...+......|++|.|+.++.++++..+..++|+|.++
T Consensus 485 ~~r~~~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL 563 (810)
T 3now_A 485 NKRITVLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI 563 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 2 5667889999999999 77899999999999999997655555555689999999999999999999999999999
Q ss_pred ccCChhHHHH--HHHhCcHHHHHHhhCCCCCc-chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940 220 SDGTNDKIQA--VIEAGVCGPLVELLGHPSPS-VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKE 296 (449)
Q Consensus 220 ~~~~~~~~~~--~~~~~~~~~L~~ll~~~~~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 296 (449)
+...+..... ....+++++|+.+|.++... .+..|+++|.|++..++...+.+++.|+++.|+.++.++ ++.+++.
T Consensus 564 ~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~ 642 (810)
T 3now_A 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRA 642 (810)
T ss_dssp HHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHH
T ss_pred hcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHH
Confidence 8653322110 01136899999999865443 346899999999999888888899999999999999998 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHH-cCChHHHHhhccCC
Q 039940 297 SCWTVSNITAGNRKQIQAVID-AGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR-EGCIKPLCDLLLCA 374 (449)
Q Consensus 297 a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~ 374 (449)
|+++++|++.+. +.+..+.+ .|.++.|+.++..++..++..|+|+|++++.+ ++...+.+++ .|+++.|+.++.++
T Consensus 643 A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~ 720 (810)
T 3now_A 643 AAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANP 720 (810)
T ss_dssp HHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred HHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCC
Confidence 999999998754 55666665 78999999999999999999999999999986 5778899998 89999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC---CCHHHHHHHHHHHHHhc
Q 039940 375 DPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH---GNNGIREKAVTILETYW 445 (449)
Q Consensus 375 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~i~~~a~~~i~~~~ 445 (449)
+.+++..+++++.|+....+. ....+.+.|+++.|..+... .++++.+.|.+.++...
T Consensus 721 d~~vq~~A~~aL~NL~~~s~e-------------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 721 SPAVQHRGIVIILNMINAGEE-------------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp SHHHHHHHHHHHHHHHTTCHH-------------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCHH-------------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 999999999999999974332 37888999999999999543 47999999999988753
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.4e-38 Score=304.69 Aligned_cols=377 Identities=24% Similarity=0.339 Sum_probs=332.2
Q ss_pred chhhHhhhcHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 039940 15 LNLQTKLEILPAMVAGVWSD-DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNI 93 (449)
Q Consensus 15 ~~~~~~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l 93 (449)
.....+.|.+|.++++|.++ ++.++..|+++|.+++.+. ......++..|+++.|+.+|.+++ ++++..|+++|+++
T Consensus 123 ~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l 200 (530)
T 1wa5_B 123 IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNV 200 (530)
T ss_dssp HHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence 34556779999999999987 8999999999999998754 456677888999999999999988 89999999999999
Q ss_pred cCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHH
Q 039940 94 ASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTW 173 (449)
Q Consensus 94 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 173 (449)
+..+++.+..+...|+++.|+.++.+.+..++..++|+|++++.............++++.++.++ .+.++.++..++|
T Consensus 201 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~ 279 (530)
T 1wa5_B 201 AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACW 279 (530)
T ss_dssp HTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHH
T ss_pred hCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHH
Confidence 998888999999999999999999999999999999999999977622233445678999999999 6778999999999
Q ss_pred HHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchh
Q 039940 174 TLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLI 252 (449)
Q Consensus 174 ~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 252 (449)
+|.+++...+.. ......++++.|+.++.++++.++..++++|++++.+.+...+.+.+.|+++.|+.+|.++++.++.
T Consensus 280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~ 359 (530)
T 1wa5_B 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 359 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHH
Confidence 999999875322 2223358999999999999999999999999999998888888888899999999999999999999
Q ss_pred hHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCH--HHHHHHHHCCChHHHHHHhh
Q 039940 253 PALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNR--KQIQAVIDAGLIVPLVNLLQ 329 (449)
Q Consensus 253 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~--~~~~~l~~~~~~~~L~~ll~ 329 (449)
.|+++|++++.+++...+.+++.++++.|+.++.++ ++.++..|+|+|+|++. +.+ +....+++.|+++.|+.++.
T Consensus 360 ~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~ 438 (530)
T 1wa5_B 360 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 438 (530)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHh
Confidence 999999999998888888888999999999999988 99999999999999997 344 67788889999999999999
Q ss_pred cCchhHHHHHHHHHHHhhccCCH----------HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 330 DAEFDIKKEAAWAISNATKAGTQ----------EQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 330 ~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
+.++.++..++++|.+++..+.. .....+.+.|+++.|..++.++++++++.+..+|.+++...+.
T Consensus 439 ~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~ 514 (530)
T 1wa5_B 439 IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 514 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence 99999999999999999986322 2456677899999999999999999999999999999976543
No 15
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.9e-37 Score=303.71 Aligned_cols=402 Identities=18% Similarity=0.191 Sum_probs=344.5
Q ss_pred hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940 18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT 97 (449)
Q Consensus 18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 97 (449)
..+.++++.++++|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ .+++..++.+|.+++..+
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcC
Confidence 445689999999999999999999999999998875 566777888999999999999998 789999999999999878
Q ss_pred hhhhHHHHhCCChHHHHHhhCCCC-hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHH
Q 039940 98 SVNTKVLIDHGAVPIFVKLLASPS-DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLS 176 (449)
Q Consensus 98 ~~~~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~ 176 (449)
++.+..+.+.|+++.|+.++.+.+ ..++..++.+|.+++. .+..+..+.+.|+++.++.++ .+.+..+++.++|+|.
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~ 249 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLR 249 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHH
Confidence 999999999999999999998754 6788999999999985 456788888999999999999 6678999999999999
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC--CcchhhH
Q 039940 177 NLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS--PSVLIPA 254 (449)
Q Consensus 177 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~v~~~a 254 (449)
+++...+.. ....++++.|+.++.+++++++..++++|.+++..++.....+.+.|+++.|+.++.+.+ +.++..|
T Consensus 250 nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a 327 (644)
T 2z6h_A 250 NLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327 (644)
T ss_dssp HHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHH
Confidence 999876432 334689999999999999999999999999999988887888999999999999998733 6899999
Q ss_pred HHHHHHhhcCChh---hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC
Q 039940 255 LRTVGNIVTGDDF---QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA 331 (449)
Q Consensus 255 ~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~ 331 (449)
+++|++++...++ ....+.+.++++.|+.+|.++.++.+++.|+|+|+|++.+... ...+.+.|+++.|++++.+.
T Consensus 328 ~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~ 406 (644)
T 2z6h_A 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRA 406 (644)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhcc
Confidence 9999999875432 2334778999999999999873468999999999999886543 47888999999999999875
Q ss_pred c----------------------hhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 039940 332 E----------------------FDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI 389 (449)
Q Consensus 332 ~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l 389 (449)
+ .+++..++.+|.+++. +...+..+.+.|+++.|+.++.+.+++++..++++|.++
T Consensus 407 ~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l 484 (644)
T 2z6h_A 407 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 484 (644)
T ss_dssp HHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred chhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4 3456667777777776 456677888999999999999999999999999999998
Q ss_pred HHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 039940 390 LKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILE 442 (449)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~ 442 (449)
.... .+...+.+.|+++.|..+..++++++++.|...+.
T Consensus 485 ~~~~--------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~ 523 (644)
T 2z6h_A 485 AQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 523 (644)
T ss_dssp HTSH--------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HcCH--------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHH
Confidence 8532 24788899999999999999999999665444433
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=3.9e-38 Score=299.64 Aligned_cols=368 Identities=25% Similarity=0.337 Sum_probs=325.8
Q ss_pred hcHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 22 EILPAMVAGVWSD-DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 22 ~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
+.+|.+++.|+++ ++.++..|+++|.+++.+. .+....+++.|+++.|++++++++ ++++..|+++|++++.++++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 8899999999998 8999999999999998754 455667788999999999999988 899999999999999988889
Q ss_pred hHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940 101 TKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l 178 (449)
+..+.+.|+++.|+.++.+ .+..++..++|+|++++... +...... ..++++.++.++ .+.++.++..++|++.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999995 78999999999999999765 4433333 378999999999 678899999999999999
Q ss_pred hcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940 179 CKGKP-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257 (449)
Q Consensus 179 ~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 257 (449)
+...+ ........++++.++.++.++++.++..++++|++++.+.+...+.+.+.|+++.++.++.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 98752 22223346899999999999999999999999999999888877778888999999999999999999999999
Q ss_pred HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHH
Q 039940 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIK 336 (449)
Q Consensus 258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~ 336 (449)
|++++.+++...+.+++.++++.|+.++.++ ++.+|..|+|+|+|++.+ +++....+++.|+++.|++++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999998888888888899999999999998 999999999999999974 77888888899999999999999999999
Q ss_pred HHHHHHHHHhhccCCH----------HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940 337 KEAAWAISNATKAGTQ----------EQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 337 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
..|+++|.+++..+.. .....+.+.|+++.|..+++++++++++.++.+|.+++...+
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999999986422 234667788999999999999999999999999999996544
No 17
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.7e-39 Score=305.36 Aligned_cols=364 Identities=16% Similarity=0.179 Sum_probs=303.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK 102 (449)
Q Consensus 23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 102 (449)
.+|.+++.|++++++++..|+++|.+++.++ .+....+.+.|++|.|+++|++++ ++++..|+++|.|++.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999999999999999999997543 444668899999999999999988 89999999999999997799999
Q ss_pred HHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc--------c-------ccHH
Q 039940 103 VLIDHGAVPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE--------H-------ARLS 166 (449)
Q Consensus 103 ~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------~-------~~~~ 166 (449)
.+++.|++|.|+++|. ++++++++.++|+|+|++.+ +..+..+.+ |+++.|+.++.. . .+++
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 88999999999999999988 678887888 999999999931 1 3567
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhh-chHHHHHHhhcC------CCHHHHHHHHHHHHHcccCC----------------
Q 039940 167 MLRIGTWTLSNLCKGKPQPPFDQVR-PVLPALAQLIHL------DDEEVLRNVCWTLSNLSDGT---------------- 223 (449)
Q Consensus 167 ~~~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~~---------------- 223 (449)
+++.++|+|.|++..+......... |+++.|+.++.+ .+.+++..+++++.+++...
T Consensus 159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 8889999999999873222222223 899999999985 45678888888898886321
Q ss_pred ----------------------------------hhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHHHHHHHhhcCChhh
Q 039940 224 ----------------------------------NDKIQAVIEAGVCGPLVELLGHP-SPSVLIPALRTVGNIVTGDDFQ 268 (449)
Q Consensus 224 ----------------------------------~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~ 268 (449)
+...+.+++.++++.++.+|.++ ++.+++.|+|+|+|++.++...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 11122344557788889988764 5789999999999999876442
Q ss_pred H----HHHH-hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCc------hhHHH
Q 039940 269 T----QCVI-NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAE------FDIKK 337 (449)
Q Consensus 269 ~----~~~~-~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~------~~v~~ 337 (449)
. +.++ +.|+++.|+.+|.++ +.+++++|+|+|+|++.+. + ...++..|+++.|+++|...+ .++..
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~-~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP-L-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG-G-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH-H-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 2 3344 689999999999999 9999999999999998753 3 345666689999999998864 36888
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhh
Q 039940 338 EAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 338 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~ 394 (449)
.++++|.++... +++....+.+.|+++.|.+++.++ ++++++.|.++|++++...+
T Consensus 396 ~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 999999999886 567888888999999999999999 99999999999999986543
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.2e-38 Score=298.64 Aligned_cols=369 Identities=19% Similarity=0.195 Sum_probs=305.2
Q ss_pred hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCC-
Q 039940 18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASG- 96 (449)
Q Consensus 18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~- 96 (449)
.++.+.+|.++++|.++++.++..|+++|.+++.+. .+.+..+++.|++|.|+++|++++ .+++..|+++|.|++.+
T Consensus 44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSS
T ss_pred CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccC
Confidence 345678999999999999999999999999998754 677888999999999999999998 89999999999999985
Q ss_pred ChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc---------------
Q 039940 97 TSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN--------------- 160 (449)
Q Consensus 97 ~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--------------- 160 (449)
+++++..+.+.|+|+.|+.+|.+ .+.++++.++++|+||+.. +..+..+.+ ++++.|+.++.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k 199 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCK 199 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC--------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccc
Confidence 68999999999999999999986 6789999999999999874 566777764 57999998762
Q ss_pred --ccccHHHHHHHHHHHHHhhcCCCC-CChh-hhhchHHHHHHhhcC------CCHHHHHHHHHHHHHcccCChh-----
Q 039940 161 --EHARLSMLRIGTWTLSNLCKGKPQ-PPFD-QVRPVLPALAQLIHL------DDEEVLRNVCWTLSNLSDGTND----- 225 (449)
Q Consensus 161 --~~~~~~~~~~a~~~l~~l~~~~~~-~~~~-~~~~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~~~~----- 225 (449)
...++.++++++++|.||+...+. +... ...++++.|+.++++ .+...++.++++|.||+.....
T Consensus 200 ~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~ 279 (584)
T 3l6x_A 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQA 279 (584)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTC
T ss_pred ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccch
Confidence 123679999999999999987643 2222 236778899998874 4678999999999999865211
Q ss_pred --------------------HHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChh---h-HHHHHhcCCHHH
Q 039940 226 --------------------KIQAVIEAGVCGPLVELLG-HPSPSVLIPALRTVGNIVTGDDF---Q-TQCVINHGAVPY 280 (449)
Q Consensus 226 --------------------~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~---~-~~~~~~~~~l~~ 280 (449)
..+.+.+.++++.++.++. +.++.+++.|+++|.|++.+... . ...+.+.++++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~ 359 (584)
T 3l6x_A 280 ERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSA 359 (584)
T ss_dssp CC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHH
T ss_pred hhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHH
Confidence 0112233355678888885 46788999999999999987532 2 223445789999
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--------chhHHHHHHHHHHHhhccCCH
Q 039940 281 LLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--------EFDIKKEAAWAISNATKAGTQ 352 (449)
Q Consensus 281 L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~ 352 (449)
|+.+|.++ +..+++.|+|+|+|++.+.. . +..+..|+++.|+++|.++ +.+++..|+++|.|++.. ++
T Consensus 360 Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~-~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~ 435 (584)
T 3l6x_A 360 IADLLTNE-HERVVKAASGALRNLAVDAR-N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NL 435 (584)
T ss_dssp HHHGGGCS-CHHHHHHHHHHHHHHHTTCS-C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHHhCChh-H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CH
Confidence 99999999 99999999999999997542 2 2445779999999999876 357899999999999876 78
Q ss_pred HHHHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhhh
Q 039940 353 EQIKYLVREGCIKPLCDLLLCA--DPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 353 ~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~ 394 (449)
++.+.+.+.|+++.|+.++.+. .+.+.+.|.++|+++..+.+
T Consensus 436 ~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 436 EAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 9999999999999999999986 78899999999999997554
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.9e-35 Score=296.42 Aligned_cols=406 Identities=18% Similarity=0.183 Sum_probs=348.2
Q ss_pred hHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC
Q 039940 18 QTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT 97 (449)
Q Consensus 18 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 97 (449)
..+.|+++.++++|+++++.++..|+++|.+++... ......+.+.|+++.|++++.+++ .+++..++.+|.+++..+
T Consensus 230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCC
Confidence 445689999999999999999999999999998765 556667778999999999999988 899999999999999888
Q ss_pred hhhhHHHHhCCChHHHHHhhCCCC-hHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHH
Q 039940 98 SVNTKVLIDHGAVPIFVKLLASPS-DDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLS 176 (449)
Q Consensus 98 ~~~~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~ 176 (449)
++.+..+.+.|+++.|+.++.+.+ ...++.++.+|.+++.. +..+..+.+.|+++.++.++ .+.+..+++.++|+|.
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~ 385 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLR 385 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHH
Confidence 999999999999999999998755 55677889999999864 46677888899999999999 6678899999999999
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCC-cchhhH
Q 039940 177 NLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSP-SVLIPA 254 (449)
Q Consensus 177 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~-~v~~~a 254 (449)
+++...+.. ....++++.|+.++.+.+++++..++++|++++..++.....+.+.|+++.|+.++.+ ++. .++..|
T Consensus 386 ~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~A 463 (780)
T 2z6g_A 386 NLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 463 (780)
T ss_dssp HHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHH
Confidence 999886432 2346899999999999999999999999999999888888889999999999999986 333 899999
Q ss_pred HHHHHHhhcCChh---hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC
Q 039940 255 LRTVGNIVTGDDF---QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA 331 (449)
Q Consensus 255 ~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~ 331 (449)
+++|++++..+.+ ....+.+.++++.|+.+|.++.++.+++.|+|+|+|++.++ .....+.+.|+++.|+.++.++
T Consensus 464 l~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~ 542 (780)
T 2z6g_A 464 ICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRA 542 (780)
T ss_dssp HHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhc
Confidence 9999999876443 23467789999999999998833599999999999998754 4557788999999999999765
Q ss_pred c----------------------hhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 039940 332 E----------------------FDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI 389 (449)
Q Consensus 332 ~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l 389 (449)
+ .+++..++.+|.+++. +++.+..+.+.|+++.|+.++.+.++.++..++.+|.++
T Consensus 543 ~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L 620 (780)
T 2z6g_A 543 HQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 620 (780)
T ss_dssp HHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4 3466678888888876 567777788999999999999999999999999999999
Q ss_pred HHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940 390 LKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL 446 (449)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~ 446 (449)
.... .+...+.+.|+++.|..++.+++++++..|...+.++..
T Consensus 621 ~~~~--------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 621 AQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HTSH--------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred hcCH--------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 7432 247889999999999999999999998887777766543
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=6.2e-36 Score=283.07 Aligned_cols=367 Identities=19% Similarity=0.222 Sum_probs=303.2
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcC-CCc
Q 039940 63 QAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAH-SPG 141 (449)
Q Consensus 63 ~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~ 141 (449)
..+.++.|+.+|.+++ ++++..|+++|.+++.++++++..+.+.|+||.|+++|.+++..+++.|+|+|.||+.. ++.
T Consensus 46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 4678999999999998 89999999999999988899999999999999999999999999999999999999985 678
Q ss_pred hhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------------------C
Q 039940 142 CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH------------------L 203 (449)
Q Consensus 142 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~------------------~ 203 (449)
.+..+.+.|+++.|+.+|....+.++++.++++|++|+..+. .+.....+++|.|+.++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 999999999999999999555788999999999999998653 333344678999999771 2
Q ss_pred CCHHHHHHHHHHHHHcccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcCChh---------
Q 039940 204 DDEEVLRNVCWTLSNLSDGTNDKIQAVIEA-GVCGPLVELLGH------PSPSVLIPALRTVGNIVTGDDF--------- 267 (449)
Q Consensus 204 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~~~--------- 267 (449)
.+.+++.++.++|.|++..+++..+.+.+. |+++.|+.+++. .+....+.|+++|.|++.....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 367999999999999999887766767775 667899999864 4566889999999999875211
Q ss_pred ----------------hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH---HHHH-HHHHCCChHHHHHH
Q 039940 268 ----------------QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNR---KQIQ-AVIDAGLIVPLVNL 327 (449)
Q Consensus 268 ----------------~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~---~~~~-~l~~~~~~~~L~~l 327 (449)
..+.+.+.++++.|+.+|....++.+++.|+|+|.|++.+.. ...+ .+.+.++++.|+++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 111122335577889999654488999999999999987642 2223 33356889999999
Q ss_pred hhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC--------CHHHHHHHHHHHHHHHHhhhhhhcc
Q 039940 328 LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA--------DPEIVTVCLKGLENILKVGEAKKNR 399 (449)
Q Consensus 328 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~--------~~~~~~~~~~~l~~l~~~~~~~~~~ 399 (449)
|..++.+++..|+++|.||+.+.. . +..+..|+++.|+.+|.+. +.+++..++++|.+++...+.
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~--~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~---- 436 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDAR--N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE---- 436 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCS--C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred HcCCCHHHHHHHHHHHHHHhCChh--H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence 999999999999999999998642 2 3345788999999999876 357888999999999965443
Q ss_pred CCCCCcccHHHHHHHhcchHHHHHHHhcCC--CHHHHHHHHHHHHHhcCC
Q 039940 400 GSTIGDVNQYARLVEGAEGFKKIEDLKSHG--NNGIREKAVTILETYWLK 447 (449)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~i~~~a~~~i~~~~~~ 447 (449)
....+.+.|+++.|.+|..+. .+.+++.|..++.+++..
T Consensus 437 ---------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 437 ---------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp ---------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred ---------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 267788999999999998775 899999999999998754
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=282.05 Aligned_cols=331 Identities=18% Similarity=0.166 Sum_probs=280.9
Q ss_pred hhhHhhhcHHHHHHHhcCC------------CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCH----------HHHHHh
Q 039940 16 NLQTKLEILPAMVAGVWSD------------DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIV----------PRFVEF 73 (449)
Q Consensus 16 ~~~~~~~~i~~l~~~l~s~------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i----------~~L~~l 73 (449)
....+.|.+|.++++|+.. ++++++.|+++|.+++.+. .+......+.|++ +.++++
T Consensus 64 ~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (458)
T 3nmz_A 64 ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEW 142 (458)
T ss_dssp HHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 5578899999999999963 3799999999999999987 6677777777777 667777
Q ss_pred hcCCC-CHH-----HHH-------HHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC-----------CChHHHHHHH
Q 039940 74 LLRED-YPR-----LQF-------EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS-----------PSDDVREQAV 129 (449)
Q Consensus 74 l~~~~-~~~-----~~~-------~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-----------~~~~~~~~a~ 129 (449)
+.+.. ..+ +++ +|+|+|.|++. ++++|+.+.+.|+++.|+.++.. .++.++..|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa 221 (458)
T 3nmz_A 143 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAG 221 (458)
T ss_dssp HTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHH
Confidence 77652 112 434 99999999987 59999999999999999999942 3477999999
Q ss_pred HHHHHHhcCCCchhhhHh-hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhh-cCCC
Q 039940 130 WALGNIVAHSPGCRNLVL-HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK--PQPPFDQVRPVLPALAQLI-HLDD 205 (449)
Q Consensus 130 ~~L~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll-~~~~ 205 (449)
|+|.|++.+++..+..+. ..|+++.|+.+| .+.+++++..++|+|.||+... ..+......|++|.|+.+| .+.+
T Consensus 222 ~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~ 300 (458)
T 3nmz_A 222 MALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 300 (458)
T ss_dssp HHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCS
T ss_pred HHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCC
Confidence 999999988876776665 456699999999 6889999999999999999852 2233444579999999975 5678
Q ss_pred HHHHHHHHHHHHHcccCChhHHHHHH-HhCcHHHHHHhhCCCCCc----chhhHHHHHHHhhc---CChhhHHHHHhcCC
Q 039940 206 EEVLRNVCWTLSNLSDGTNDKIQAVI-EAGVCGPLVELLGHPSPS----VLIPALRTVGNIVT---GDDFQTQCVINHGA 277 (449)
Q Consensus 206 ~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~----v~~~a~~~l~~l~~---~~~~~~~~~~~~~~ 277 (449)
..++..++.+|+|++...++....+. ..|+++.|+.+|.+++.. ++..|+++|.|++. .+++.++.+.+.|+
T Consensus 301 ~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~ 380 (458)
T 3nmz_A 301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380 (458)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc
Confidence 99999999999999985544444455 789999999999987653 89999999999997 67888889999999
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940 278 VPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 350 (449)
++.|+.+|.++ +..++++|+|+|+|++.++++.+..+++.|+++.|++++.++++.+++.|+++|.|++.+.
T Consensus 381 i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 381 LQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999 9999999999999999888999999999999999999999999999999999999999873
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=6.5e-36 Score=290.26 Aligned_cols=403 Identities=17% Similarity=0.167 Sum_probs=339.0
Q ss_pred hhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 21 LEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 21 ~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
.+.++.+++.|.+ +++.++..|+.+|.+++.. .+....+.+.|+++.|++++++++ ++++..|+++|.+++.+++.
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~ 134 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEG 134 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcc
Confidence 4789999999975 5899999999999999654 457788889999999999999998 89999999999999997677
Q ss_pred hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940 100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~ 179 (449)
.+..+.+.|+++.|++++.+++.+++..++.+|.+++..++..+..+.+.|+++.++.++....+...+..++.++.+++
T Consensus 135 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 214 (529)
T 1jdh_A 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214 (529)
T ss_dssp HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 88888899999999999999999999999999999999888888888899999999999966666778888999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940 180 KGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG 259 (449)
Q Consensus 180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~ 259 (449)
............++++.++.++.++++.++..+++++.+++...+... ...++++.|+.++.+++++++..++++|+
T Consensus 215 ~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 215 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp TSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 865444444457899999999999999999999999999997754321 12378999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCCHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHH---HHHHHHHCCChHHHHHHhhcCc-hh
Q 039940 260 NIVTGDDFQTQCVINHGAVPYLLALLINNH-KKSIKKESCWTVSNITAGNRK---QIQAVIDAGLIVPLVNLLQDAE-FD 334 (449)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~~~~L~~ll~~~~-~~ 334 (449)
+++..+++....+.+.|+++.|+.++.+.. ++.++..|+++|+|++.++++ .+..+.+.|+++.|++++.+++ +.
T Consensus 292 ~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~ 371 (529)
T 1jdh_A 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371 (529)
T ss_dssp HHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchH
Confidence 999988888888999999999999997631 478999999999999875432 4567788999999999999886 59
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHH----------------------HHHh
Q 039940 335 IKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLEN----------------------ILKV 392 (449)
Q Consensus 335 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~----------------------l~~~ 392 (449)
++..++|+|+|++.. ++....+.+.|+++.|+.++.+++++++..+.|++.+ +...
T Consensus 372 v~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~ 449 (529)
T 1jdh_A 372 LIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 449 (529)
T ss_dssp HHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC
Confidence 999999999999984 3445788899999999999988777777766665554 3322
Q ss_pred hhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940 393 GEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW 445 (449)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~ 445 (449)
. .....+.+.|+++.|..+..+++++++..+...+.++-
T Consensus 450 ~--------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~ 488 (529)
T 1jdh_A 450 V--------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488 (529)
T ss_dssp H--------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred c--------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 1 12566888999999999999999999999998887754
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=286.94 Aligned_cols=404 Identities=18% Similarity=0.177 Sum_probs=345.0
Q ss_pred hhcHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 21 LEILPAMVAGVWSD-DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 21 ~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
.+.++.+++.|.++ ++.++..|+.+|.+++.. .+....+.+.|+++.|++++++++ +.++..|+++|.+++...+.
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~ 131 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEG 131 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTT
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcch
Confidence 47899999999864 899999999999998654 457788889999999999999998 89999999999999987677
Q ss_pred hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940 100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~ 179 (449)
.+..+.+.|+++.|+.+|.+++..++..++.+|.+++...+..+..+.+.|+++.++.++.......++..++.+|.+++
T Consensus 132 ~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs 211 (644)
T 2z6h_A 132 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 211 (644)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence 88888899999999999999999999999999999998888888888899999999999966666788999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940 180 KGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG 259 (449)
Q Consensus 180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~ 259 (449)
............++++.++.++.+++..++..++++|.+++...+.. ....++++.|+.++.+++++++..++++|+
T Consensus 212 ~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 212 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILS 288 (644)
T ss_dssp TCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 87654455555789999999999999999999999999999765431 112268999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCCHHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCH---HHHHHHHHCCChHHHHHHhhcCc-hh
Q 039940 260 NIVTGDDFQTQCVINHGAVPYLLALLINNHK-KSIKKESCWTVSNITAGNR---KQIQAVIDAGLIVPLVNLLQDAE-FD 334 (449)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~l~nl~~~~~---~~~~~l~~~~~~~~L~~ll~~~~-~~ 334 (449)
+++..++..++.+.+.|+++.|+.++.+..+ +.++..|+++|+|++..++ .....+.+.|+++.|+++|.+++ +.
T Consensus 289 ~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~ 368 (644)
T 2z6h_A 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 368 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHH
T ss_pred HHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchH
Confidence 9999888888889999999999999987423 7899999999999987432 23344778899999999999874 79
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC----------------------HHHHHHHHHHHHHHHHh
Q 039940 335 IKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD----------------------PEIVTVCLKGLENILKV 392 (449)
Q Consensus 335 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~----------------------~~~~~~~~~~l~~l~~~ 392 (449)
+++.|+++|+|++.. ++....+.+.|+++.|+.++.+.+ .+++..++.+|.+++..
T Consensus 369 v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~ 446 (644)
T 2z6h_A 369 LIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 446 (644)
T ss_dssp HHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC
Confidence 999999999999985 344588889999999999987643 45666777788777754
Q ss_pred hhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940 393 GEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL 446 (449)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~ 446 (449)
.. ....+.+.|+++.|..+..+.+++++..|...+.++..
T Consensus 447 ~~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 447 VH--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp HH--------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HH--------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 42 25678889999999999999999999999988877653
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=3.2e-34 Score=287.67 Aligned_cols=403 Identities=18% Similarity=0.182 Sum_probs=342.3
Q ss_pred hhcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 21 LEILPAMVAGVWS-DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 21 ~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
.+.++.|++.|.+ +++.++..|+.+|.+++.. ..+...+.+.|+++.|+++|++++ +.++..|+++|.+++...++
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTT
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChh
Confidence 3789999999985 4899999999999998654 455777888999999999999998 89999999999999997778
Q ss_pred hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940 100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~ 179 (449)
.+..+.+.|+++.|+.++.+++..++..++.+|.+++..+++.+..+.+.++++.++.++........+..++.++.+++
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 347 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 347 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 88888899999999999999999999999999999998888888888888999999999966666677788999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940 180 KGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG 259 (449)
Q Consensus 180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~ 259 (449)
............++++.|+.++.+.+..++..++++|.+++...... ....++++.|+.++.+.+++++..|+++|+
T Consensus 348 ~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~ 424 (780)
T 2z6g_A 348 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILS 424 (780)
T ss_dssp TSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 86544444445789999999999999999999999999999765431 112368999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCCHHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHCCChHHHHHHhhcCch-h
Q 039940 260 NIVTGDDFQTQCVINHGAVPYLLALLINNHK-KSIKKESCWTVSNITAGNRK---QIQAVIDAGLIVPLVNLLQDAEF-D 334 (449)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~~~~L~~ll~~~~~-~ 334 (449)
+++.+++..+..+.+.|+++.|+.+|.+..+ ..++..|+++|+|++..+++ ....+...|+++.|++++..++. .
T Consensus 425 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~ 504 (780)
T 2z6g_A 425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWP 504 (780)
T ss_dssp HHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHH
Confidence 9999888888889999999999999986423 38999999999999874432 24467788999999999998864 9
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC----------------------HHHHHHHHHHHHHHHHh
Q 039940 335 IKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD----------------------PEIVTVCLKGLENILKV 392 (449)
Q Consensus 335 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~----------------------~~~~~~~~~~l~~l~~~ 392 (449)
++..|+++|+|++.. ++....+.+.|+++.|+.++.+.+ ++++..++.+|.++...
T Consensus 505 v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~ 582 (780)
T 2z6g_A 505 LIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582 (780)
T ss_dssp HHHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC
Confidence 999999999999974 455678889999999999987643 34666788888887643
Q ss_pred hhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940 393 GEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW 445 (449)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~ 445 (449)
.. ....+.+.|+++.|..+..+++++++..|...+.++.
T Consensus 583 ~~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 583 IH--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp HH--------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hh--------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 21 2567889999999999999999999999998887653
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=3e-31 Score=239.03 Aligned_cols=277 Identities=18% Similarity=0.190 Sum_probs=239.5
Q ss_pred CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc----------cccHHHHHHHHHHHHHhhcCCCCCChh
Q 039940 119 SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE----------HARLSMLRIGTWTLSNLCKGKPQPPFD 188 (449)
Q Consensus 119 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~l~~l~~~~~~~~~~ 188 (449)
.+.......|+|+|+|++.+ +++|+.+.+.|++++|+.++.. ..++.+++.|+|+|.|++.+.......
T Consensus 43 ~~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 43 APVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp CGGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34456677899999999987 6899999999999999999942 135789999999999999886422222
Q ss_pred h--hhchHHHHHHhhcCCCHHHHHHHHHHHHHcccC-ChhHHHHHHHhCcHHHHHHhh-CCCCCcchhhHHHHHHHhhcC
Q 039940 189 Q--VRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDG-TNDKIQAVIEAGVCGPLVELL-GHPSPSVLIPALRTVGNIVTG 264 (449)
Q Consensus 189 ~--~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~l~~l~~~ 264 (449)
. ..|++|.|+.+|.+++++++..++++|.|++.. ++.....+.+.|+++.|+.+| .+++++++..|+.+|+|++.+
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 2 356799999999999999999999999999985 556677788999999999974 567788999999999999996
Q ss_pred ChhhHHHHH-hcCCHHHHHHHhccCCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHH
Q 039940 265 DDFQTQCVI-NHGAVPYLLALLINNHKK---SIKKESCWTVSNITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKK 337 (449)
Q Consensus 265 ~~~~~~~~~-~~~~l~~L~~ll~~~~~~---~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~ 337 (449)
+++.+..+. ..|+++.|+.+|.++.+. .+++.|+|+|.|++. ++++.+..+.+.|+++.|+.+|.+++..+++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 666666666 799999999999877222 599999999999986 6888999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 039940 338 EAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKK 397 (449)
Q Consensus 338 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 397 (449)
.|+++|.|++.. +++.++.+.+.|+++.|+++++++++.+++.+.++|.+|+...+...
T Consensus 282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999865 78899999999999999999999999999999999999998765543
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=1.1e-31 Score=241.81 Aligned_cols=268 Identities=21% Similarity=0.189 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCC-----------CChHHHHHHHHHHHHHhcCCCchhhhHh-
Q 039940 80 PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNIVAHSPGCRNLVL- 147 (449)
Q Consensus 80 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~- 147 (449)
...+.+|+++|.|++. ++++|+.+.+.|+++.|+.+|.. .++.++..|+|+|.|++..++..+..+.
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556689999999998 58999999999999999999942 2478999999999999988876777664
Q ss_pred hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHcccCCh
Q 039940 148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK--PQPPFDQVRPVLPALAQLI-HLDDEEVLRNVCWTLSNLSDGTN 224 (449)
Q Consensus 148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~ 224 (449)
..|+++.|+.+| .+.++++++.++|+|.||+... ..+......|++|.|+.+| ++.+.++++.++.+|.|++...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 456699999999 7888999999999999999862 2233444579999999975 56789999999999999998665
Q ss_pred hHHHHHH-HhCcHHHHHHhhCCCCC----cchhhHHHHHHHhhc---CChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940 225 DKIQAVI-EAGVCGPLVELLGHPSP----SVLIPALRTVGNIVT---GDDFQTQCVINHGAVPYLLALLINNHKKSIKKE 296 (449)
Q Consensus 225 ~~~~~~~-~~~~~~~L~~ll~~~~~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 296 (449)
+....+. ..|+++.|+.+|.++++ +++..|+++|.|++. .+++.++.+.+.|+++.|+.+|.++ +..++++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 5445555 78999999999988665 389999999999997 6788888999999999999999998 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940 297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 350 (449)
|+|+|+|++.++++.+..+++.|+++.|++++.++++.+++.|+++|.|++...
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999888999999999999999999999999999999999999999874
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=7.1e-28 Score=210.31 Aligned_cols=240 Identities=27% Similarity=0.388 Sum_probs=221.9
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940 65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN 144 (449)
Q Consensus 65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 144 (449)
|.++.|+++|++++ ++++..|+++|.+++..+++.+..+.+.|+++.|+.++.++++.++..++++|++++..++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999999999 89999999999999998888999999999999999999999999999999999999998888999
Q ss_pred hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940 145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT 223 (449)
Q Consensus 145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 223 (449)
.+.+.|+++.++.++ ++.+++++..++++|.+++...+ ........++++.++.++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 67889999999999999996542 3333444789999999999999999999999999999988
Q ss_pred hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940 224 NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN 303 (449)
Q Consensus 224 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n 303 (449)
+...+.+.+.|+++.|+.++.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++ ++.++..|+++|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88878899999999999999999999999999999999998888888899999999999999998 99999999999999
Q ss_pred HhcC
Q 039940 304 ITAG 307 (449)
Q Consensus 304 l~~~ 307 (449)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9864
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=1.3e-27 Score=208.68 Aligned_cols=241 Identities=25% Similarity=0.391 Sum_probs=222.8
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC-CCCC
Q 039940 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK-PQPP 186 (449)
Q Consensus 108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~ 186 (449)
|.++.|+.+|.+++++++..|+++|.+++...+..+..+.+.|+++.++.++ .+.+++++..++++|.+++... ....
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 5689999999999999999999999999998887888888999999999999 6778999999999999999885 3333
Q ss_pred hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 039940 187 FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD 266 (449)
Q Consensus 187 ~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 266 (449)
.....++++.++.++.+++++++..++++|.+++...+.....+.+.|+++.++.++.++++.++..++++|++++..++
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 44457899999999999999999999999999998888888889999999999999999999999999999999999888
Q ss_pred hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 039940 267 FQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNA 346 (449)
Q Consensus 267 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 346 (449)
...+.+.+.|+++.|+.++.++ ++.++..|+++|++++.+++.....+.+.|+++.|++++.+++++++..|+++|.++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 8888889999999999999998 999999999999999998889999999999999999999999999999999999999
Q ss_pred hccC
Q 039940 347 TKAG 350 (449)
Q Consensus 347 ~~~~ 350 (449)
....
T Consensus 240 ~~~~ 243 (252)
T 4hxt_A 240 KSGG 243 (252)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 9864
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=5.4e-28 Score=210.97 Aligned_cols=239 Identities=32% Similarity=0.494 Sum_probs=220.0
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940 65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN 144 (449)
Q Consensus 65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 144 (449)
..++.++..|.+++ ++++..|+++|.++...+++.+..+.+.|+++.|+.+|.++++.++..|+++|++++.+++..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45889999999999 79999999999887765778888999999999999999999999999999999999998888899
Q ss_pred hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940 145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT 223 (449)
Q Consensus 145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 223 (449)
.+.+.|+++.++.++ +++++.++..++++|.+++...+.. ......++++.++.++.++++.++..++++|.+++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6688999999999999999987544 44555789999999999999999999999999999988
Q ss_pred hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940 224 NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN 303 (449)
Q Consensus 224 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n 303 (449)
+.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.|+.++.++ ++.++..|+++|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999988888888899999999999999999 99999999999999
Q ss_pred Hhc
Q 039940 304 ITA 306 (449)
Q Consensus 304 l~~ 306 (449)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 964
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=1e-27 Score=209.21 Aligned_cols=240 Identities=33% Similarity=0.509 Sum_probs=217.3
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
...++.+++.|++++++++..|++.|.++++.. .+....+++.|+++.|+++|++++ ++++..|+++|++++.++++.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHH
Confidence 456899999999999999999999998887763 677888999999999999999999 899999999999999988999
Q ss_pred hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
+..+.+.|+++.|+.++.++++.++..|+++|++++...+.....+.+.|+++.++.++ ++.++.++..++++|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999887765547788999999999999 77789999999999999998
Q ss_pred CCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940 181 GKPQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG 259 (449)
Q Consensus 181 ~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~ 259 (449)
..+.. ......++++.++.++.++++.++..++++|.+++..++.....+.+.|+++.|+.++.+++++++..|+++|+
T Consensus 168 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 168 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 75322 23334789999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred Hhhc
Q 039940 260 NIVT 263 (449)
Q Consensus 260 ~l~~ 263 (449)
+++.
T Consensus 248 ~l~~ 251 (252)
T 4db8_A 248 KLQS 251 (252)
T ss_dssp TTC-
T ss_pred HHhc
Confidence 9875
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.95 E-value=2.7e-26 Score=201.21 Aligned_cols=234 Identities=14% Similarity=0.128 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHH-hhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH
Q 039940 206 EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE-LLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL 284 (449)
Q Consensus 206 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l 284 (449)
.+-+..++..|.+++...+ +...+.+.|+++.++. +|.++++.++..|+|+|++++.+++...+.+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4567788999999997654 4556788899999999 9999999999999999999999999999999999999999999
Q ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCCh
Q 039940 285 LINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCI 364 (449)
Q Consensus 285 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~ 364 (449)
|+++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.++++.++..|+|+|++++.+ +++.++.+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98643788999999999999999988888899999999999999999999999999999999987 67889999999999
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 039940 365 KPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHG-NNGIREKAVTILET 443 (449)
Q Consensus 365 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~i~~~a~~~i~~ 443 (449)
+.|+.++.++++++++.++.+|.+++...+....... ...+.+...+++ .++.++.++ +.++++++..++++
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987543211000 011235555544 367777666 79999999999999
Q ss_pred hcCCC
Q 039940 444 YWLKG 448 (449)
Q Consensus 444 ~~~~~ 448 (449)
||+++
T Consensus 285 ~f~~~ 289 (296)
T 1xqr_A 285 CFSSP 289 (296)
T ss_dssp HCC--
T ss_pred HcCCC
Confidence 99754
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.5e-26 Score=217.46 Aligned_cols=417 Identities=14% Similarity=0.123 Sum_probs=313.2
Q ss_pred cccCCCCCCCchhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHH
Q 039940 5 LFLPSAPAPSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQF 84 (449)
Q Consensus 5 ~~~p~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 84 (449)
.++|..|..-++.+..-|..+.+.+.+.+........++..+.+.+|. ....+..+..+.++.|.+++++ ++++.
T Consensus 238 ~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~ 312 (778)
T 3opb_A 238 ELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQI 312 (778)
T ss_dssp HHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHH
T ss_pred HHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHH
Confidence 457777777777888888889998888665444444455555555565 3555666678889999999975 47889
Q ss_pred HHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh-hcCCHHHHHHHHcccc
Q 039940 85 EAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL-HEEALIPLLAQLNEHA 163 (449)
Q Consensus 85 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~~ 163 (449)
.|+-+|+.+..........+. ...+.+.+++.+++.+-+..|++.|+.++.+ +..+..+. +.+++..|+.++....
T Consensus 313 lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~ 389 (778)
T 3opb_A 313 YSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQK 389 (778)
T ss_dssp HHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCC
Confidence 999999998863322111111 2567788888877766699999999999665 45555554 5566999999995457
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCCh---------------------------------------hhhhchHHHHHHhhcCC
Q 039940 164 RLSMLRIGTWTLSNLCKGKPQPPF---------------------------------------DQVRPVLPALAQLIHLD 204 (449)
Q Consensus 164 ~~~~~~~a~~~l~~l~~~~~~~~~---------------------------------------~~~~~~l~~l~~ll~~~ 204 (449)
+..+...++.++.|++.+.+.... ....|++|.|+.++.++
T Consensus 390 d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~ 469 (778)
T 3opb_A 390 MTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL 469 (778)
T ss_dssp CTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS
T ss_pred CchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC
Confidence 788999999999999987642100 11267899999999999
Q ss_pred CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCc---chhhHHHHHHHhhcCChhhHHHHHh----cCC
Q 039940 205 DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPS---VLIPALRTVGNIVTGDDFQTQCVIN----HGA 277 (449)
Q Consensus 205 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~---v~~~a~~~l~~l~~~~~~~~~~~~~----~~~ 277 (449)
++.++..++++|.+++.. ++....+++.|+++.|+.++.+.... .+..|+.+|++++...+... ++. .++
T Consensus 470 s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~a 546 (778)
T 3opb_A 470 SPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNA 546 (778)
T ss_dssp CHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTH
T ss_pred CHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccc
Confidence 999999999999999966 44566688999999999999887544 78999999999985433221 121 389
Q ss_pred HHHHHHHhcc-CCch------------hHHHHHHHHHHHHhcCC----HHHHHHHHHC-CChHHHHHHhhcCchhHHHHH
Q 039940 278 VPYLLALLIN-NHKK------------SIKKESCWTVSNITAGN----RKQIQAVIDA-GLIVPLVNLLQDAEFDIKKEA 339 (449)
Q Consensus 278 l~~L~~ll~~-~~~~------------~v~~~a~~~l~nl~~~~----~~~~~~l~~~-~~~~~L~~ll~~~~~~v~~~a 339 (449)
+++|+.+|.. +... .-+.+|+.+|.|++..+ ++.+..+++. |+++.|.+++.+++..+|+.|
T Consensus 547 I~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA 626 (778)
T 3opb_A 547 IPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRST 626 (778)
T ss_dssp HHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHH
T ss_pred hHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHH
Confidence 9999999983 2111 12779999999999865 3446678885 999999999999999999999
Q ss_pred HHHHHHhhccCCHHHH-HHHHHc------CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHH
Q 039940 340 AWAISNATKAGTQEQI-KYLVRE------GCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARL 412 (449)
Q Consensus 340 ~~aL~~l~~~~~~~~~-~~l~~~------~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 412 (449)
+++++|++.. ++.+ +.+.+. +.++.|+.+++++|.+++..|.++|.++....+... ...
T Consensus 627 ~elI~NL~~~--~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia------------~~l 692 (778)
T 3opb_A 627 LELISNMMSH--PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA------------KEL 692 (778)
T ss_dssp HHHHHHHHTS--GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH------------HHH
T ss_pred HHHHHHHhCC--cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHH------------HHH
Confidence 9999999984 4443 233321 237889999999999999999999999976554321 334
Q ss_pred HHhcchHHHHHHHhcC--CCHHHHHHHHHHHHHhcC
Q 039940 413 VEGAEGFKKIEDLKSH--GNNGIREKAVTILETYWL 446 (449)
Q Consensus 413 ~~~~~~~~~l~~l~~~--~~~~i~~~a~~~i~~~~~ 446 (449)
++..+|++.+..+..+ +++++++++..++.++++
T Consensus 693 l~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 693 LTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4444789988888766 899999999999999885
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.4e-25 Score=213.55 Aligned_cols=389 Identities=13% Similarity=0.099 Sum_probs=299.2
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
-..++.|.+.+++ ..++..|+-.|+++....+.... .+ ....+.+.+.+.+++ .+.+..|++.|..++. .++.
T Consensus 295 ~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~-si--~~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~V 367 (778)
T 3opb_A 295 ENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCI-NL--KQLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASV 367 (778)
T ss_dssp HHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTC-CH--HHHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHH
T ss_pred HhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcC-cH--HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHH
Confidence 3556777887765 47888899999998766532211 11 125677888888877 5669999999999998 6788
Q ss_pred hHHHHhC-CChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCc-------------------------------------
Q 039940 101 TKVLIDH-GAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPG------------------------------------- 141 (449)
Q Consensus 101 ~~~~~~~-~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~------------------------------------- 141 (449)
+..+.+. ++++.|++++.+ .+..+...++.+|.|++...+.
T Consensus 368 Ke~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~ 447 (778)
T 3opb_A 368 KIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILL 447 (778)
T ss_dssp HHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHH
Confidence 8888776 669999999985 7788999999999999864331
Q ss_pred -hhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHH---HHHHHHHHHH
Q 039940 142 -CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEE---VLRNVCWTLS 217 (449)
Q Consensus 142 -~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~---~~~~~~~~l~ 217 (449)
.+..+.+.|+++.|+.++ .+.++.+++.++|+|.+++.+...+......|+++.|+.++.+.... .+..++.+|.
T Consensus 448 ~~~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALA 526 (778)
T 3opb_A 448 FNEKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALT 526 (778)
T ss_dssp HHHHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 245567889999999998 77899999999999999998866666666789999999999877544 8999999999
Q ss_pred HcccCChhHHHHHHH----hCcHHHHHHhhCC-CCCc------------c-hhhHHHHHHHhhcCCh----hhHHHHHhc
Q 039940 218 NLSDGTNDKIQAVIE----AGVCGPLVELLGH-PSPS------------V-LIPALRTVGNIVTGDD----FQTQCVINH 275 (449)
Q Consensus 218 ~l~~~~~~~~~~~~~----~~~~~~L~~ll~~-~~~~------------v-~~~a~~~l~~l~~~~~----~~~~~~~~~ 275 (449)
++....+... ++. .|++++|+.+|.. +... . +..|+.+|.|++..++ +.++.++..
T Consensus 527 rLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~ 604 (778)
T 3opb_A 527 RMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST 604 (778)
T ss_dssp HHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred HHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence 9985433221 121 3889999999983 2211 1 6689999999999862 345667774
Q ss_pred -CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHC------CChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940 276 -GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI-QAVIDA------GLIVPLVNLLQDAEFDIKKEAAWAISNAT 347 (449)
Q Consensus 276 -~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~-~~l~~~------~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 347 (449)
|+++.|..+|.++ +..+|+.|+++++|++.. ++.+ +.+.+. +.++.|+.++..++.++|..|+|+|++++
T Consensus 605 ~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 605 KVYWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 8999999999998 889999999999999874 3433 233322 23789999999999999999999999997
Q ss_pred ccCCHHHHHHHHHc-CChHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHH
Q 039940 348 KAGTQEQIKYLVRE-GCIKPLCDLLLC--ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIED 424 (449)
Q Consensus 348 ~~~~~~~~~~l~~~-~~~~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 424 (449)
.. ++..++.+++. ++++.++.++++ ++++++..++.+++|++.+..... ....+.........++.+.+
T Consensus 683 s~-~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~ 754 (778)
T 3opb_A 683 TT-IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNG-------TNEVYPLLQENQKLKDALNM 754 (778)
T ss_dssp HH-CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTT-------TTSCCHHHHSCHHHHHHHHH
T ss_pred CC-ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCC-------ChHHHHHHhcChHHHHHHHH
Confidence 65 56777888876 799999999998 899999999999999998553322 12234555556667777877
Q ss_pred HhcCC
Q 039940 425 LKSHG 429 (449)
Q Consensus 425 l~~~~ 429 (449)
+...+
T Consensus 755 ~lk~~ 759 (778)
T 3opb_A 755 SLKRG 759 (778)
T ss_dssp HHSSS
T ss_pred HHhCC
Confidence 75444
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=2.8e-24 Score=181.86 Aligned_cols=199 Identities=36% Similarity=0.545 Sum_probs=186.6
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHH
Q 039940 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 270 (449)
Q Consensus 191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 270 (449)
.+..+.+..++.+++++++..++++|.+++..+++....+.+.|+++.|+.+|.++++.++..|+++|++++.+++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 57788999999999999999999999999988888888899999999999999999999999999999999988888888
Q ss_pred HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940 271 CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 271 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 350 (449)
.+.+.|+++.|+.+|+++ ++.++..|+|+|+|++.+++.....+.+.|+++.|++++.++++.++..|+++|.+++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~- 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG- 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 999999999999999999 999999999999999998888888899999999999999999999999999999999986
Q ss_pred CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940 351 TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK 391 (449)
Q Consensus 351 ~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~ 391 (449)
+++....+.+.|+++.|..++++++++++..|+++|.++..
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 57888889999999999999999999999999999998853
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=2.7e-23 Score=175.83 Aligned_cols=199 Identities=36% Similarity=0.510 Sum_probs=180.2
Q ss_pred hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhH
Q 039940 148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDK 226 (449)
Q Consensus 148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 226 (449)
..+..+.+..++ ++.+++++..++++|.+++...+ ........++++.++.++.++++.++..++++|++++..++..
T Consensus 10 ~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 456777888888 78899999999999999997653 2233444789999999999999999999999999999888888
Q ss_pred HHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 227 IQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 227 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
...+.+.|+++.|+.+|.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++ ++.++..|+++|+|++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 88899999999999999999999999999999999998888888889999999999999998 99999999999999999
Q ss_pred CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhc
Q 039940 307 GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATK 348 (449)
Q Consensus 307 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 348 (449)
++++....+.+.|+++.|++++.++++++++.|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 888888899999999999999999999999999999999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.91 E-value=2.5e-23 Score=182.46 Aligned_cols=227 Identities=14% Similarity=0.177 Sum_probs=187.8
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH-hhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh
Q 039940 164 RLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQ-LIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL 242 (449)
Q Consensus 164 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l 242 (449)
+.+-+..|+..|.+++....+.......|++|.++. +|.++++.++..++|+|++++.+++...+.+++.|+++.|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 445677888888888887543333444789999999 9999999999999999999999998888889999999999999
Q ss_pred hCC-CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCh
Q 039940 243 LGH-PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321 (449)
Q Consensus 243 l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~ 321 (449)
|.+ ++..++..|+|+|++++.+++...+.+.+.|+++.|+.+|+++ +..++..|+|+|++++.++++.+..+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence 985 4778999999999999999888888889999999999999998 99999999999999998888889999999999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHc--CC---hHHHHhhcc-CC-CHHHHHHHHHHHHHHHHh
Q 039940 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVRE--GC---IKPLCDLLL-CA-DPEIVTVCLKGLENILKV 392 (449)
Q Consensus 322 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--~~---~~~L~~ll~-~~-~~~~~~~~~~~l~~l~~~ 392 (449)
+.|+.+|.++++.++..|+++|.+++.. .+......... .+ ++.-..-++ .+ ..++++.+..++.++|..
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~-~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTD-FPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTT-CHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhC-ChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999987 33333322211 11 211222333 22 467888899999988854
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=2e-21 Score=162.74 Aligned_cols=197 Identities=21% Similarity=0.158 Sum_probs=170.4
Q ss_pred CHHHHHHhhcCCCCH--HHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh
Q 039940 66 IVPRFVEFLLREDYP--RLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143 (449)
Q Consensus 66 ~i~~L~~ll~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 143 (449)
.+|.++++|.+++ + +++..|++.+.+++..+++.+..+.+.|+||.|+++|.++++++++.|+|+|.|++.++++.+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4899999999988 6 889999999999998789999999999999999999999999999999999999999888899
Q ss_pred hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------------CCCHH
Q 039940 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH----------------LDDEE 207 (449)
Q Consensus 144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~----------------~~~~~ 207 (449)
..+.+.|++++|+++|..+.+.++++.++.+|+||+.....+. ....+++|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999999556789999999999999998764433 334567898887653 13679
Q ss_pred HHHHHHHHHHHcccCChhHHHHHHHh-CcHHHHHHhhCC------CCCcchhhHHHHHHHhhcC
Q 039940 208 VLRNVCWTLSNLSDGTNDKIQAVIEA-GVCGPLVELLGH------PSPSVLIPALRTVGNIVTG 264 (449)
Q Consensus 208 ~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a~~~l~~l~~~ 264 (449)
++.++..+|.|++..+++..+.+.+. |+++.|+.+++. .+...++.++.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998877777777765 678999999875 2556889999999999864
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=160.86 Aligned_cols=197 Identities=19% Similarity=0.158 Sum_probs=165.5
Q ss_pred hcHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 22 EILPAMVAGVWSDDN--SMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
-.+|.++++|+++++ +++..|++.|.+++.++ .+.+..+++.|++|.|+++|++++ ++++..|+++|.|++.++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence 358999999999988 89999999999998654 567888999999999999999988 89999999999999998899
Q ss_pred hhHHHHhCCChHHHHHhhC-CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc---------------ccc
Q 039940 100 NTKVLIDHGAVPIFVKLLA-SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN---------------EHA 163 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------------~~~ 163 (449)
++..+.+.|+||.|+++|. +++.+++++++.+|+|++... ..+..+.+ +++++|+.++. ...
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence 9999999999999999997 578999999999999998754 45666655 46888887552 013
Q ss_pred cHHHHHHHHHHHHHhhcCC-CCCChhh-hhchHHHHHHhhcC------CCHHHHHHHHHHHHHcccC
Q 039940 164 RLSMLRIGTWTLSNLCKGK-PQPPFDQ-VRPVLPALAQLIHL------DDEEVLRNVCWTLSNLSDG 222 (449)
Q Consensus 164 ~~~~~~~a~~~l~~l~~~~-~~~~~~~-~~~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~ 222 (449)
++++++++.++|.||+..+ ..+.... ..|+++.|+.+++. .+.+.+++++.+|.||+..
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6799999999999999865 2333232 36788999999874 2678899999999999864
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.83 E-value=3.3e-19 Score=182.30 Aligned_cols=360 Identities=13% Similarity=0.122 Sum_probs=263.1
Q ss_pred HhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940 19 TKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 19 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 98 (449)
.+...-+.+++.+.++++.+|..++.++..++.......+ .+.++.|+..+.+++ ..++..++.+|+.++...+
T Consensus 87 ~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~ 160 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSA 160 (852)
T ss_dssp HHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhH
Confidence 3445667778888888999999999999999876422222 456899999999988 8999999999999997433
Q ss_pred hhhHHHH----hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHH
Q 039940 99 VNTKVLI----DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWT 174 (449)
Q Consensus 99 ~~~~~~~----~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 174 (449)
.....-. -..+++.+++.+.+++..+|..|++++.++....+...... -...++.++..+ .+++++++..++++
T Consensus 161 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 161 EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRA 238 (852)
T ss_dssp THHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHH
T ss_pred HHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHH
Confidence 3221100 11356777788888999999999999998876543211000 123566677766 67889999999999
Q ss_pred HHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHh---CcHHHHHHhh--------
Q 039940 175 LSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA---GVCGPLVELL-------- 243 (449)
Q Consensus 175 l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~ll-------- 243 (449)
+..++...+........++++.+...+.+.++.++..++.++..++...... . .... .+++.++..+
T Consensus 239 L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~-~-~~~~~~~~l~p~ll~~l~~~e~d~~ 316 (852)
T 4fdd_A 239 LVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK-D-VLVRHLPKLIPVLVNGMKYSDIDII 316 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH-H-HHTTTHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH-H-HHHHHHHHHHHHHHHHcCCcHhHHH
Confidence 9999987643333344678889999999999999999999999998654211 1 1221 4566676666
Q ss_pred ---CC-----------CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 039940 244 ---GH-----------PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNR 309 (449)
Q Consensus 244 ---~~-----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 309 (449)
.+ .++.++..|..+++.++...++. ++ ..+++.+...+.++ ++.+|..|++++++++.+..
T Consensus 317 ~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~ 391 (852)
T 4fdd_A 317 LLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCM 391 (852)
T ss_dssp HHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTH
T ss_pred HhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcch
Confidence 33 34567888999999988653321 11 23678888888888 99999999999999998776
Q ss_pred HHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 039940 310 KQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI 389 (449)
Q Consensus 310 ~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l 389 (449)
+...... .++++.++..+.++++.||..|++++++++.......... .-.++++.|+..+.+.++.++..++++|.++
T Consensus 392 ~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l 469 (852)
T 4fdd_A 392 QGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATL 469 (852)
T ss_dssp HHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 6444333 3678999999999999999999999999987421100000 1123678888888888999999999999999
Q ss_pred HHhhhh
Q 039940 390 LKVGEA 395 (449)
Q Consensus 390 ~~~~~~ 395 (449)
++....
T Consensus 470 ~~~~~~ 475 (852)
T 4fdd_A 470 EEEACT 475 (852)
T ss_dssp HHHHGG
T ss_pred HHHhhH
Confidence 977654
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.82 E-value=1.5e-18 Score=170.43 Aligned_cols=344 Identities=11% Similarity=0.096 Sum_probs=229.5
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
...+|.+.+++.++++.+|..|+..|..++...+ . ......++|.+..++++++ +.++..|+.+|..++...+..
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~---~-~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~ 237 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE---L-DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE 237 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC---H-HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc---H-HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH
Confidence 3556777788888999999999999999976431 1 1234567889999999888 899999999999988633221
Q ss_pred hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
.....++|.+..++.++++.+|..++.+|+.++...+. .......++.++..+ ++.++.++..+++++..++.
T Consensus 238 ---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 238 ---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp ---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHH
Confidence 12234788999999999999999999999999753211 112334677788888 77889999999999999998
Q ss_pred CCCCCCh--hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 181 GKPQPPF--DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 181 ~~~~~~~--~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
..+.... .....++|.+..++.++++.++..+++++..++..-... .....+++.+..++++++++++..++.++
T Consensus 311 ~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l 387 (588)
T 1b3u_A 311 NLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNL 387 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTC
T ss_pred HhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 7543221 345778899999999999999999999999887532211 11235778888888888888998888888
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHH
Q 039940 259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKK 337 (449)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~ 337 (449)
+.++...... .....+++.+..++.+. +..+|..++.+++.++.. .++ .....+++.+...+.+++..+|.
T Consensus 388 ~~l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~ 459 (588)
T 1b3u_A 388 DCVNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp HHHHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHH
T ss_pred HHHHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHH
Confidence 8776532211 11123566666666666 677777777777766531 000 00112455566666666666666
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940 338 EAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK 391 (449)
Q Consensus 338 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~ 391 (449)
.|+.++..++...+++. ....+++.|..+++++++.+|..+++++..+..
T Consensus 460 ~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~ 509 (588)
T 1b3u_A 460 AATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509 (588)
T ss_dssp HHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 66666666655322221 112244444444444455555555555554443
No 41
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.82 E-value=1.4e-18 Score=170.61 Aligned_cols=383 Identities=13% Similarity=0.132 Sum_probs=285.7
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
...+|.+.++++++++.++..|+.+|..++... + .......++|.+..++++++ ..++..|+.+|+.++...+.
T Consensus 202 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~--~~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~- 275 (588)
T 1b3u_A 202 SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL--P--QEDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP- 275 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS--C--HHHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH-
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC--C--HHHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc-
Confidence 356788888889999999999999999887643 1 11233457889999998888 79999999999999862211
Q ss_pred hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch-hhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC-RNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~ 179 (449)
......+++.+..++.++++.+|..++++|+.++...+.. +........++.+...+ ++.++.++..+++++..++
T Consensus 276 --~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 276 --EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLS 352 (588)
T ss_dssp --HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGH
T ss_pred --ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence 1223356899999999999999999999999998654321 11112234566677777 7788999999999999887
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940 180 KGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG 259 (449)
Q Consensus 180 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~ 259 (449)
..... ......++|.+..++.+++++++..++.++..+....... .....+++.+..++.+.++.++..++.+++
T Consensus 353 ~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~ 427 (588)
T 1b3u_A 353 PILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427 (588)
T ss_dssp HHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 54211 1223567889999999889999999999888877543211 122357888889999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHHH
Q 039940 260 NIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKE 338 (449)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~ 338 (449)
.++...... .....+++.+..++.++ +..+|..|+.+++.++.. .++ .....++|.+..++.+.+..+|..
T Consensus 428 ~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~ 499 (588)
T 1b3u_A 428 LLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMT 499 (588)
T ss_dssp HHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHH
T ss_pred HHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHH
Confidence 987531111 11224678888999888 899999999999999862 222 122358888988888889999999
Q ss_pred HHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcch
Q 039940 339 AAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEG 418 (449)
Q Consensus 339 a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (449)
++++++.++...+.+ .....+++.|..++++++++++..+++++..+....... +. ....
T Consensus 500 a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~------------~~----~~~~ 559 (588)
T 1b3u_A 500 TLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS------------TL----QSEV 559 (588)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH------------HH----HHHH
T ss_pred HHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh------------hh----HHHH
Confidence 999999998742222 123458899999999999999999999999998654321 11 1334
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940 419 FKKIEDLKSHGNNGIREKAVTILETYW 445 (449)
Q Consensus 419 ~~~l~~l~~~~~~~i~~~a~~~i~~~~ 445 (449)
+..|..+..+++++++..|...+..+-
T Consensus 560 ~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 560 KPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 677788889999999999999988653
No 42
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.80 E-value=1.4e-16 Score=149.23 Aligned_cols=370 Identities=16% Similarity=0.155 Sum_probs=274.5
Q ss_pred hhhcHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHhcCCC
Q 039940 20 KLEILPAMVAGVWSD-DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRE-DYPRLQFEAAWVLTNIASGT 97 (449)
Q Consensus 20 ~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~ 97 (449)
..+.++.|...+.+. -.+-|+.|+..|..++.. .. ..+..++++.|+..|+.. ++.++...++.+|.++...+
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~----y~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK----YR-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT----TT-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH----hH-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC
Confidence 468899999999864 588999999999999532 22 344567799999999865 34788899999998877643
Q ss_pred hh-----------------hhHHHH-hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc-hhhhHhh-cCCHHHHHH
Q 039940 98 SV-----------------NTKVLI-DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG-CRNLVLH-EEALIPLLA 157 (449)
Q Consensus 98 ~~-----------------~~~~~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~-~~~i~~l~~ 157 (449)
++ ..+.+. +.+.++.|+.+|++.+..+|..++.+|..++...+. .++.+.. .++++.|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 32 122333 457899999999999999999999999999988876 6777774 489999999
Q ss_pred HHcccccHHHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhcCCC----HHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940 158 QLNEHARLSMLRIGTWTLSNLCKGKPQPP-FDQVRPVLPALAQLIHLDD----EEVLRNVCWTLSNLSDGTNDKIQAVIE 232 (449)
Q Consensus 158 ~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~ 232 (449)
+| ++..+.++..++..|.+++.+.+..+ ....+++++.|+.++..+. ..+...++.++.|+.+.++.+...+.+
T Consensus 174 lL-~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE 252 (651)
T 3grl_A 174 LL-ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE 252 (651)
T ss_dssp GG-GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HH-hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99 77778899999999999999985443 3444799999999998654 478899999999999999988888999
Q ss_pred hCcHHHHHHhhCCCCCc------chhh---HHHHHHHhhcCC------hhhHHHHHhcCCHHHHHHHhccCC-chhHHHH
Q 039940 233 AGVCGPLVELLGHPSPS------VLIP---ALRTVGNIVTGD------DFQTQCVINHGAVPYLLALLINNH-KKSIKKE 296 (449)
Q Consensus 233 ~~~~~~L~~ll~~~~~~------v~~~---a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~ 296 (449)
.++++.|..++..++.. ...+ ++.++.-++..+ ......+.+.|+++.++.++.... ...++.+
T Consensus 253 t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~ 332 (651)
T 3grl_A 253 GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTE 332 (651)
T ss_dssp TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHH
T ss_pred cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHH
Confidence 99999999999864322 1222 455555555542 234556779999999999987542 4679999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCC---------ChHHHHHHhhcC-chhHHHHHHHHHHHhhccCCHHHHHHHHHc----C
Q 039940 297 SCWTVSNITAGNRKQIQAVIDAG---------LIVPLVNLLQDA-EFDIKKEAAWAISNATKAGTQEQIKYLVRE----G 362 (449)
Q Consensus 297 a~~~l~nl~~~~~~~~~~l~~~~---------~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~----~ 362 (449)
|..+++.++++++.....+.+.. ++..|+.++.+. ..++|..|+.++...+.. +.+....+... .
T Consensus 333 Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~-N~~~Q~~i~~~llp~~ 411 (651)
T 3grl_A 333 TINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK-NQKGQGEIVSTLLPST 411 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC-CHHHHHHHHHhcCCcc
Confidence 99999999999998888877643 233344445443 688999999999999987 44444444432 1
Q ss_pred ------Ch---HHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 039940 363 ------CI---KPLCDLLLCADPEIVTVCLKGLENILKVGEAK 396 (449)
Q Consensus 363 ------~~---~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 396 (449)
.+ ..|..-+-+.|+.-.-.|.-++..++...+..
T Consensus 412 ~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~ 454 (651)
T 3grl_A 412 IDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ 454 (651)
T ss_dssp CCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence 01 12334444556644344666677777665543
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.79 E-value=8.1e-18 Score=172.05 Aligned_cols=385 Identities=14% Similarity=0.117 Sum_probs=269.0
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChH
Q 039940 32 WSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVP 111 (449)
Q Consensus 32 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 111 (449)
.+.++.+|..|+..|.+..... -.....-....+-+.+++.+.+++ +.++..++.+++.++...... .-.+.++
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~wp~ll~ 131 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----NWPDLLP 131 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----TCTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----ccHHHHH
Confidence 4567888888888888887532 111111123344566777888877 899999999999998732110 1136789
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh----hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh
Q 039940 112 IFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL----HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF 187 (449)
Q Consensus 112 ~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 187 (449)
.|+..+.+++..+++.++.+|+.++...+.....-. -...++.++..+ +++++.++..+++++.++....+....
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~~~~~ 210 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRTQALM 210 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence 999999999999999999999999865443211000 112345555555 577899999999999988765432222
Q ss_pred hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh
Q 039940 188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF 267 (449)
Q Consensus 188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 267 (449)
.....+++.+..++.+++++++..+++++..++...+......++ ++++.+...+.+.++.++..|+.++..++....
T Consensus 211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~- 288 (852)
T 4fdd_A 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI- 288 (852)
T ss_dssp TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-
Confidence 233578888999998999999999999999999876654333333 578888899999999999999999999886531
Q ss_pred hHHHHHh---cCCHHHHHHHh-----------cc--C--------CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH
Q 039940 268 QTQCVIN---HGAVPYLLALL-----------IN--N--------HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVP 323 (449)
Q Consensus 268 ~~~~~~~---~~~l~~L~~ll-----------~~--~--------~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~ 323 (449)
.. .... ..+++.++..+ .+ . .+..+|+.|+.++..++...++ .++. .+++.
T Consensus 289 ~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~ 363 (852)
T 4fdd_A 289 CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPL 363 (852)
T ss_dssp HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHH
Confidence 11 1221 13456666665 22 0 1345789999999998763221 1121 36778
Q ss_pred HHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 039940 324 LVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTI 403 (449)
Q Consensus 324 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 403 (449)
+...+.+.++.+|..|++++++++.... +...... .++++.+..+++++++.++..+++++.++.........
T Consensus 364 l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----- 436 (852)
T 4fdd_A 364 LKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP----- 436 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-----
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-----
Confidence 8888888899999999999999998743 3332222 34788999999999999999999999999986543211
Q ss_pred CcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940 404 GDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW 445 (449)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~ 445 (449)
..+.. +.++.+.....++++.++..|...+.++.
T Consensus 437 ---~~~~~-----~ll~~L~~~L~d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 437 ---DTYLK-----PLMTELLKRILDSNKRVQEAACSAFATLE 470 (852)
T ss_dssp ---TTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred ---HHHHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 01122 23455666666778999999988887654
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.79 E-value=6.5e-16 Score=144.79 Aligned_cols=413 Identities=14% Similarity=0.136 Sum_probs=294.1
Q ss_pred hhcHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCC----------------cHHHH-HHcCCHHHHHHhhcCCCCHH
Q 039940 21 LEILPAMVAGVWS--DDNSMQLEAATQFRRLLSIERSL----------------PIDEV-IQAGIVPRFVEFLLREDYPR 81 (449)
Q Consensus 21 ~~~i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~~~----------------~~~~~-~~~~~i~~L~~ll~~~~~~~ 81 (449)
.++++.++..|+. +|.+....++..|.++.+....+ ..+.+ .+.+.++.|+.+|++.+ -.
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~ 137 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FH 137 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HH
Confidence 5679999999986 57888888999998887654221 11233 34678999999999988 79
Q ss_pred HHHHHHHHHHHhcCCChh-hhHHHHhC-CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHH
Q 039940 82 LQFEAAWVLTNIASGTSV-NTKVLIDH-GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQL 159 (449)
Q Consensus 82 ~~~~a~~~L~~l~~~~~~-~~~~~~~~-~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l 159 (449)
++..++.+|..++...++ ..+.+... ++++.|+.+|++..+.+|..++..|.+++.++++.++.+.-.|+++.+++.+
T Consensus 138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii 217 (651)
T 3grl_A 138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII 217 (651)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence 999999999999987766 66777754 9999999999999999999999999999999999999999999999999999
Q ss_pred cccc---cHHHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCH------HHHHH---HHHHHHHcccCC---
Q 039940 160 NEHA---RLSMLRIGTWTLSNLCKGKP-QPPFDQVRPVLPALAQLIHLDDE------EVLRN---VCWTLSNLSDGT--- 223 (449)
Q Consensus 160 ~~~~---~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~------~~~~~---~~~~l~~l~~~~--- 223 (449)
.... ...+...++.++.+|.+..+ +.......++++.|..++..+++ ....+ ++.++.-+....
T Consensus 218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~ 297 (651)
T 3grl_A 218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP 297 (651)
T ss_dssp HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 5432 34788999999999999974 33444447889999999875432 12333 556666666542
Q ss_pred ---hhHHHHHHHhCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCChhhHHHHHhcC---------CHHHHHHHhccCC
Q 039940 224 ---NDKIQAVIEAGVCGPLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCVINHG---------AVPYLLALLINNH 289 (449)
Q Consensus 224 ---~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---------~l~~L~~ll~~~~ 289 (449)
..+...+.+.|+++.+++++..+ ...++..|+.+++.+.++++...+.+.+.. ++..|+.++.+..
T Consensus 298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~ 377 (651)
T 3grl_A 298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ 377 (651)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence 23456788899999999998875 456889999999999999888777665432 4444555566654
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHC----C------Ch---HHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHH
Q 039940 290 KKSIKKESCWTVSNITAGNRKQIQAVIDA----G------LI---VPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIK 356 (449)
Q Consensus 290 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~----~------~~---~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 356 (449)
...+|..|+.++..+..++++....+... . .+ ..+..-+.+.|+----.|+.++.++... +++...
T Consensus 378 ~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~ 456 (651)
T 3grl_A 378 PFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKE 456 (651)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHH
Confidence 68899999999999999888766555542 1 11 1344555556665556688888898886 455444
Q ss_pred HHHH--------cC---ChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHH
Q 039940 357 YLVR--------EG---CIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIED 424 (449)
Q Consensus 357 ~l~~--------~~---~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 424 (449)
.+.+ +. .++.+...+.. .++.++..-+..|...+..++. ....++.+...++.|.+
T Consensus 457 ~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~------------AV~dFL~~~s~l~~L~~ 524 (651)
T 3grl_A 457 QLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI------------AVTHFLHNSANVPFLTG 524 (651)
T ss_dssp HHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH------------HHHHHHHSTTHHHHHHH
T ss_pred HHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH------------HHHHHHcCCchHHHHHH
Confidence 3333 11 14445555543 4566666666666655544433 24566666656777765
Q ss_pred HhcC-CC---HHHHHHHHHHHHHhcCC
Q 039940 425 LKSH-GN---NGIREKAVTILETYWLK 447 (449)
Q Consensus 425 l~~~-~~---~~i~~~a~~~i~~~~~~ 447 (449)
...+ .. .-++-.+.-++=-||+.
T Consensus 525 ~i~~~~~~~~~lvqGL~a~LLGi~yef 551 (651)
T 3grl_A 525 QIAENLGEEEQLVQGLCALLLGISIYF 551 (651)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCcchHHHHHHHHHHHHHHhhc
Confidence 5432 22 33666666666555543
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.75 E-value=2.3e-15 Score=146.86 Aligned_cols=341 Identities=16% Similarity=0.178 Sum_probs=243.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK 102 (449)
Q Consensus 23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 102 (449)
.++.+++++++++..++..+...+..++... . +.. .-+++.+.+-+++++ +.++..|+.+|+++.. ++...
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~---e~~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~ 120 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-P---DMA--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITE 120 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-H---HHH--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-c---hHH--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHH
Confidence 4556677777777777777766676665421 1 111 234677777788888 8999999999998863 44444
Q ss_pred HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940 103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
.+ ++.+.+++.++++.+|..|++++.+++...|+. +...+.++.+..++ .+.++.++..|++++..++...
T Consensus 121 ~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 121 YL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSC
T ss_pred HH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhC
Confidence 33 578999999999999999999999998876653 22345677888888 7889999999999999999887
Q ss_pred CCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHh
Q 039940 183 PQP-PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNI 261 (449)
Q Consensus 183 ~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l 261 (449)
+.. ........++.++..+...++..+..++.++..++..++.... .+++.+..++++.++.++.+|++++..+
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 543 3334456677888888788899999999999998866543322 5678888899999999999999999998
Q ss_pred hcC---ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH----------------------HHHHHH
Q 039940 262 VTG---DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK----------------------QIQAVI 316 (449)
Q Consensus 262 ~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~----------------------~~~~l~ 316 (449)
... +++..+.+. ..+.+.|+.++. + ++.+|..|+.+++.++...++ ....+.
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~ 343 (591)
T 2vgl_B 267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMI 343 (591)
T ss_dssp CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHH
Confidence 742 233333322 345566666554 5 778888888888877641110 011111
Q ss_pred ---HC----CChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 039940 317 ---DA----GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI 389 (449)
Q Consensus 317 ---~~----~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l 389 (449)
+. .+++.|...+.+.+.+++..++++++.++... +.... .+++.|++++...+..++..++.++..+
T Consensus 344 ~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~-~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 344 RLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV-EQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp HTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC-HHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-hhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 11 14555666667778999999999999999874 32222 2578888888888888888888888888
Q ss_pred HHhhhh
Q 039940 390 LKVGEA 395 (449)
Q Consensus 390 ~~~~~~ 395 (449)
++..+.
T Consensus 418 i~~~p~ 423 (591)
T 2vgl_B 418 FRKYPN 423 (591)
T ss_dssp HHHSCS
T ss_pred HHHCcc
Confidence 776544
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.73 E-value=7.7e-16 Score=135.96 Aligned_cols=259 Identities=14% Similarity=0.124 Sum_probs=202.9
Q ss_pred HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC
Q 039940 61 VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP 140 (449)
Q Consensus 61 ~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 140 (449)
....+.++.|+..|.+++ +.++..|+++|+++.. + +.++.|..++.++++.+|..++++|+.+.....
T Consensus 19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 345678999999999988 8999999999999873 2 357899999999999999999999999853322
Q ss_pred chhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940 141 GCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLS 220 (449)
Q Consensus 141 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 220 (449)
... ..++.+...+.+++++.++..++++|.++....+ ......++.+..++.++++.++..++++++++.
T Consensus 87 ~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 87 CED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp THH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred cch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 111 1223333333477899999999999999985431 123467899999999999999999999999875
Q ss_pred cCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHH
Q 039940 221 DGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300 (449)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 300 (449)
. .+.++.|+.++.++++.++..++++|+.+....+ ..++.|..++.++ ++.+|..|+++
T Consensus 157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a 215 (280)
T 1oyz_A 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG 215 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 3 2578999999999999999999999999854322 2567888999988 99999999999
Q ss_pred HHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHH
Q 039940 301 VSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIV 379 (449)
Q Consensus 301 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~ 379 (449)
|+++. + ...++.|+..+.++ +++..|+.+|+.+.. + ..++.|..++.+ .+++++
T Consensus 216 L~~~~--~---------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~ 270 (280)
T 1oyz_A 216 LSYRK--D---------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEII 270 (280)
T ss_dssp HHHTT--C---------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHH
T ss_pred HHHhC--C---------HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHH
Confidence 99985 2 24788888888764 489999999999854 1 367888888864 567777
Q ss_pred HHHHHHHH
Q 039940 380 TVCLKGLE 387 (449)
Q Consensus 380 ~~~~~~l~ 387 (449)
..++..+.
T Consensus 271 ~~~~~~l~ 278 (280)
T 1oyz_A 271 TSAIDKLK 278 (280)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 77777664
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.72 E-value=5.4e-16 Score=151.26 Aligned_cols=338 Identities=16% Similarity=0.155 Sum_probs=233.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK 102 (449)
Q Consensus 23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 102 (449)
.++.+.+.|+++++.++..|+++|.++.. .+.... +++.+.+++.+++ +.++..|+.++.++...+++...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~~-----l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITEY-----LCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHHH-----HHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHHH-----HHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence 45666777889999999999888877742 232332 3678999999988 99999999999999986665432
Q ss_pred HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940 103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
+.++++.+..+|.++++.++..|+++|+.++..++.........+.+..+++.+ .+.++-.+...+.++..++...
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence 246789999999999999999999999999987764311111223466777777 5567777777777776665332
Q ss_pred CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccC---ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHH
Q 039940 183 PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDG---TNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVG 259 (449)
Q Consensus 183 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~ 259 (449)
......+++.+..++++.++.++..+++++..+... +++..+.+.. .+.+.|+.++. +++.++..|+.+++
T Consensus 234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 233467888999999999999999999999998742 2333333332 45566666654 67778888888888
Q ss_pred HhhcCChhh------------------HHHHH-------hc----CCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 039940 260 NIVTGDDFQ------------------TQCVI-------NH----GAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK 310 (449)
Q Consensus 260 ~l~~~~~~~------------------~~~~~-------~~----~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 310 (449)
.++...+.. +.... +. .+++.|...+.+. +.++|..+++++++++...+.
T Consensus 308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence 776421110 01110 11 2455666777777 899999999999999987654
Q ss_pred HHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHH
Q 039940 311 QIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVCLKGLENI 389 (449)
Q Consensus 311 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l 389 (449)
... .+++.|++++......++..+..++.++.... ++. ...++..|...+++ .+++++..++|++..+
T Consensus 387 ~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~-p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey 455 (591)
T 2vgl_B 387 SAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY-PNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEY 455 (591)
T ss_dssp HHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHS-CSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred HHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHC-cch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence 332 35678888888777778877777777776542 111 13355666666653 4566666666666655
Q ss_pred HH
Q 039940 390 LK 391 (449)
Q Consensus 390 ~~ 391 (449)
..
T Consensus 456 ~~ 457 (591)
T 2vgl_B 456 AE 457 (591)
T ss_dssp CT
T ss_pred cc
Confidence 43
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.71 E-value=1e-15 Score=135.16 Aligned_cols=256 Identities=14% Similarity=0.088 Sum_probs=200.3
Q ss_pred hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
....++.+++.|.++++.++..|++.|.++.. .+.++.|+.++++++ +.++..|+++|+.+... +.
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~ 86 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KK 86 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TT
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-cc
Confidence 34579999999999999999999999998841 235788999999998 89999999999998753 22
Q ss_pred hhHHHHhCCChHHHHH-hhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940 100 NTKVLIDHGAVPIFVK-LLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l 178 (449)
... .+++.|.+ +++++++.+|..++++|+++....+.. ....++.+...+ +++++.++..+++++.++
T Consensus 87 ~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 87 CED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITA-FDKSTNVRRATAFAISVI 155 (280)
T ss_dssp THH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC
T ss_pred cch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHh-hCCCHHHHHHHHHHHHhc
Confidence 111 12344442 457789999999999999997544322 123567778878 788999999999999987
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 179 CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 179 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
... ..++.|..++.++++.++..++++|+.+....+ ..++.+..++.++++.++..|+++|
T Consensus 156 ~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 156 NDK----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCH----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 542 478999999999999999999999999854332 3567888999999999999999999
Q ss_pred HHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-chhHHH
Q 039940 259 GNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-EFDIKK 337 (449)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~ 337 (449)
+++.. ...++.|...+.++ + ++..|+++|+.+.. + ..++.|..++.+. ++++..
T Consensus 217 ~~~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~ 271 (280)
T 1oyz_A 217 SYRKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIIT 271 (280)
T ss_dssp HHTTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHH
T ss_pred HHhCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHH
Confidence 98862 34788899999865 4 89999999998843 1 4788899998754 677887
Q ss_pred HHHHHHH
Q 039940 338 EAAWAIS 344 (449)
Q Consensus 338 ~a~~aL~ 344 (449)
.+..++.
T Consensus 272 ~~~~~l~ 278 (280)
T 1oyz_A 272 SAIDKLK 278 (280)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7777664
No 49
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.67 E-value=4.9e-15 Score=152.06 Aligned_cols=358 Identities=14% Similarity=0.201 Sum_probs=246.8
Q ss_pred hhcHHHHHHHhcC-------CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 039940 21 LEILPAMVAGVWS-------DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNI 93 (449)
Q Consensus 21 ~~~i~~l~~~l~s-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l 93 (449)
...+|.++..+.. +++.++..|...|..++...+.... ..+++.+.+.+.+++ ...+..|+.+++.+
T Consensus 323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i 396 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSI 396 (861)
T ss_dssp HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHH
Confidence 4567888888874 2357888899999888754321111 234677777888888 79999999999999
Q ss_pred cCCCh-hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch---hhhHhhcCCHHHHHHHHcccccHHHHH
Q 039940 94 ASGTS-VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC---RNLVLHEEALIPLLAQLNEHARLSMLR 169 (449)
Q Consensus 94 ~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~l~~~l~~~~~~~~~~ 169 (449)
+.+.. +....... .+++.++..+.++++.+|..++|+++.++..-+.. ... -...++.++..+ ++. +.++.
T Consensus 397 ~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~ 471 (861)
T 2bpt_A 397 MDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVAT 471 (861)
T ss_dssp SSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHH
T ss_pred HcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHH
Confidence 97543 33322332 47899999999999999999999999998532110 111 123566777777 443 88999
Q ss_pred HHHHHHHHhhcCCC----CCChhhhhchHHHHHHhhcCCC--HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh
Q 039940 170 IGTWTLSNLCKGKP----QPPFDQVRPVLPALAQLIHLDD--EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL 243 (449)
Q Consensus 170 ~a~~~l~~l~~~~~----~~~~~~~~~~l~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll 243 (449)
.+++++.+++.... .........+++.+...+.+.+ +.++..++.++..++...+......+. .+++.++..+
T Consensus 472 ~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l 550 (861)
T 2bpt_A 472 NCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKL 550 (861)
T ss_dssp HHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHH
Confidence 99999999987532 2222345778888889888543 789999999999988655433222232 3556666555
Q ss_pred CCC---------------CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCch-hHHHHHHHHHHHHhcC
Q 039940 244 GHP---------------SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKK-SIKKESCWTVSNITAG 307 (449)
Q Consensus 244 ~~~---------------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-~v~~~a~~~l~nl~~~ 307 (449)
... ...++..++.+++.++...+....... ..+++.+...+++. +. .++..++.+++.++..
T Consensus 551 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~ 628 (861)
T 2bpt_A 551 GQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAAS 628 (861)
T ss_dssp HHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHH
Confidence 421 334677889999998865443222112 24677888888877 66 8999999999999853
Q ss_pred CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC--HHHHHHHHHH
Q 039940 308 NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD--PEIVTVCLKG 385 (449)
Q Consensus 308 ~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~--~~~~~~~~~~ 385 (449)
.......... .+++.+...+.++++.++..++.++..++...+.....++ ..+++.+...+.+.+ ++++..++.+
T Consensus 629 ~~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~ 705 (861)
T 2bpt_A 629 LGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSV 705 (861)
T ss_dssp HGGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred HhhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHH
Confidence 2222222222 3788999999878889999999999999876543333322 236777778887654 8899999999
Q ss_pred HHHHHHhhhh
Q 039940 386 LENILKVGEA 395 (449)
Q Consensus 386 l~~l~~~~~~ 395 (449)
+..++.....
T Consensus 706 l~~l~~~~~~ 715 (861)
T 2bpt_A 706 FGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHHhhh
Confidence 9999886543
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.67 E-value=3.8e-15 Score=152.91 Aligned_cols=400 Identities=12% Similarity=0.139 Sum_probs=262.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh-
Q 039940 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT- 101 (449)
Q Consensus 23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~- 101 (449)
.++.+.+.+.+.++..+..|+.++..++.+.......... ..+++.++..+.+++ +.++..++++++.++.......
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcC
Confidence 3455556667888999999999999997543112122222 357888999999988 8999999999999886321100
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-----CchhhhHhhcCCHHHHHHHHcc-cccHHHHHHHHHHH
Q 039940 102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-----PGCRNLVLHEEALIPLLAQLNE-HARLSMLRIGTWTL 175 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~l 175 (449)
..-.-..+++.++..+.++ +.++..+++++.+++... ......+ ...++.++..+.. +.++.++..++.++
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 0001114578888888765 899999999999997532 1122222 2346667777742 33478999999999
Q ss_pred HHhhcCCCCCChhhhhchHHHHHHhhcCC---------------CHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHH
Q 039940 176 SNLCKGKPQPPFDQVRPVLPALAQLIHLD---------------DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240 (449)
Q Consensus 176 ~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---------------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~ 240 (449)
..++...+.........++|.++..+... ...++..++.++.+++..-+........ .+++.+.
T Consensus 525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~ 603 (861)
T 2bpt_A 525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFF 603 (861)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence 99998765443444566777777666521 3457788899998888654432211222 5677788
Q ss_pred HhhCCCCC-cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 039940 241 ELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAG 319 (449)
Q Consensus 241 ~ll~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~ 319 (449)
..+.+.+. .++..++.+++.++..........+ ..+++.+...+.++ ++.++..++.+++.++........... ..
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ 680 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DA 680 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HH
Confidence 88887777 8999999999998765333332222 23788899999777 888999999999999863322222222 24
Q ss_pred ChHHHHHHhhcCc--hhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCC-----------HHHHHHHHHHH
Q 039940 320 LIVPLVNLLQDAE--FDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCAD-----------PEIVTVCLKGL 386 (449)
Q Consensus 320 ~~~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~-----------~~~~~~~~~~l 386 (449)
+++.++..+.+.+ ++++..++.+++.++.........++- .+++.+...++... ..++..+++++
T Consensus 681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~ 758 (861)
T 2bpt_A 681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY 758 (861)
T ss_dssp HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 6778888887764 899999999999998864334444332 25777777776421 34788889999
Q ss_pred HHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCC----CHHHHHHHHHHHHHh
Q 039940 387 ENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHG----NNGIREKAVTILETY 444 (449)
Q Consensus 387 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~i~~~a~~~i~~~ 444 (449)
..++........ ...+|... .++.+.....+. +..++..|...+..+
T Consensus 759 ~~i~~~l~~~~~------~~~~~~~~-----i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l 809 (861)
T 2bpt_A 759 VGIVAGLHDKPE------ALFPYVGT-----IFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809 (861)
T ss_dssp HHHHHHTTTCHH------HHGGGHHH-----HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHH------HHHHHHHH-----HHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence 888865431000 01111111 244454444332 788999888887765
No 51
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.64 E-value=2.3e-14 Score=147.39 Aligned_cols=276 Identities=19% Similarity=0.194 Sum_probs=194.9
Q ss_pred hcHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCCcH-HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh
Q 039940 22 EILPAMVAGVWSD--DNSMQLEAATQFRRLLSIERSLPI-DEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS 98 (449)
Q Consensus 22 ~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 98 (449)
..++.+.+.+.++ +..++..|+.++..++..- .... .......+++.+...+.+.+ .+++..++.+|..++...+
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhH
Confidence 4466677777776 6899999999999887532 1110 01111235777778887777 8999999999999997555
Q ss_pred hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCc------------------hhhhH--hhcCCHHHHHHH
Q 039940 99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPG------------------CRNLV--LHEEALIPLLAQ 158 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~------------------~~~~~--~~~~~i~~l~~~ 158 (449)
......+...+++.++..+.+.++.++..+++++..++..... ..... .-...++.++..
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 329 (876)
T 1qgr_A 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (876)
T ss_dssp GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHH
Confidence 5444445557788998888888999999999999988743100 00000 012345556666
Q ss_pred Hcc------cccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh-hHHHHHH
Q 039940 159 LNE------HARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN-DKIQAVI 231 (449)
Q Consensus 159 l~~------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~ 231 (449)
+.. +.+..++..+..++..++...+. .....+++.+...+.++++.++..++++++.++.+.. +......
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred hhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 632 23457888899999888876431 3356788888888888999999999999999997754 3333233
Q ss_pred HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhH--HHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 232 EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 232 ~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
..+++.++..+.++++.+|..|++++++++...+... ... -..+++.++..+.+ ++.++..+++++++++.
T Consensus 407 -~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 407 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSA--EPRVASNVCWAFSSLAE 479 (876)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999987543211 011 12467778888865 37899999999999985
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.64 E-value=3.3e-14 Score=146.15 Aligned_cols=402 Identities=16% Similarity=0.183 Sum_probs=248.0
Q ss_pred hcHHHHHHHhcC-------CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 039940 22 EILPAMVAGVWS-------DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIA 94 (449)
Q Consensus 22 ~~i~~l~~~l~s-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 94 (449)
..+|.+++.+.. +++.++..|+.+|..++...+.. ++ ..+++.+...+.+++ ..++..|+++++.++
T Consensus 321 ~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~----~~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD----IV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCIL 394 (876)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG----GH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTS
T ss_pred HHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh----hH-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHH
Confidence 457777888752 35678888888888887543211 11 245677778888888 899999999999999
Q ss_pred CCCh-hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch---hhhHhhcCCHHHHHHHHcccccHHHHHH
Q 039940 95 SGTS-VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC---RNLVLHEEALIPLLAQLNEHARLSMLRI 170 (449)
Q Consensus 95 ~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~l~~~l~~~~~~~~~~~ 170 (449)
.+.. +...... ..+++.++..+.++++.+|..|++++++++...+.. ...+ ...++.++..+ .+ ++.++..
T Consensus 395 ~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l-~~-~~~v~~~ 469 (876)
T 1qgr_A 395 EGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGL-SA-EPRVASN 469 (876)
T ss_dssp SSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHT-TS-CHHHHHH
T ss_pred cCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHH-cC-CHHHHHH
Confidence 8544 3332222 357899999999999999999999999998654321 1111 23566777777 33 3889999
Q ss_pred HHHHHHHhhcCCC--------------CCChhhhhchHHHHHHhhcCC---CHHHHHHHHHHHHHcc-------------
Q 039940 171 GTWTLSNLCKGKP--------------QPPFDQVRPVLPALAQLIHLD---DEEVLRNVCWTLSNLS------------- 220 (449)
Q Consensus 171 a~~~l~~l~~~~~--------------~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~------------- 220 (449)
+++++.+++.... ..-......+++.+...+... +..++..++.++..++
T Consensus 470 a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~ 549 (876)
T 1qgr_A 470 VCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQK 549 (876)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 9999999886421 112233467777777777643 2345444444444433
Q ss_pred -------------------------------------------cCCh-hHHHHHHHhCcHHHHHHhhCCCC--CcchhhH
Q 039940 221 -------------------------------------------DGTN-DKIQAVIEAGVCGPLVELLGHPS--PSVLIPA 254 (449)
Q Consensus 221 -------------------------------------------~~~~-~~~~~~~~~~~~~~L~~ll~~~~--~~v~~~a 254 (449)
..-. ....... ..+++.++.++++.. +.++..+
T Consensus 550 l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a 628 (876)
T 1qgr_A 550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-DVVMASLLRMFQSTAGSGGVQEDA 628 (876)
T ss_dssp HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-HHHHHHHHHHC-----CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-HHHHHHHHHHHHhccCCCCccHHH
Confidence 2211 1111011 135667777777664 4688999
Q ss_pred HHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc--Cc
Q 039940 255 LRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD--AE 332 (449)
Q Consensus 255 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~--~~ 332 (449)
+.+++.++..........+. .+++.+...+.+..++.+|..|+++++.++........... ..+++.++..+.+ .+
T Consensus 629 ~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~ 706 (876)
T 1qgr_A 629 LMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVH 706 (876)
T ss_dssp HHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSC
T ss_pred HHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCCcccc
Confidence 99999988643222222222 36778888887643678999999999999863222222222 2577888888877 36
Q ss_pred hhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC----CH-------HHHHHHHHHHHHHHHhhhhhhcc-C
Q 039940 333 FDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA----DP-------EIVTVCLKGLENILKVGEAKKNR-G 400 (449)
Q Consensus 333 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~----~~-------~~~~~~~~~l~~l~~~~~~~~~~-~ 400 (449)
.+++..+++++++++....++...++ ..+++.|...++.+ |+ .++..++.++..++......... .
T Consensus 707 ~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~ 784 (876)
T 1qgr_A 707 RSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVH 784 (876)
T ss_dssp GGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCC
T ss_pred HHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 78999999999999874333332222 12556666666533 22 67888888888888764321000 0
Q ss_pred CCCCcccHHHHHHHhcchHHHHHHHhcCC--CHHHHHHHHHHHHHh
Q 039940 401 STIGDVNQYARLVEGAEGFKKIEDLKSHG--NNGIREKAVTILETY 444 (449)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~i~~~a~~~i~~~ 444 (449)
.......+|...+ +..+..+..++ ++.++..|...+-.+
T Consensus 785 ~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l 825 (876)
T 1qgr_A 785 PDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDL 825 (876)
T ss_dssp GGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 0000112233222 34444444455 678888887777654
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.63 E-value=2.9e-15 Score=142.41 Aligned_cols=362 Identities=13% Similarity=0.104 Sum_probs=245.3
Q ss_pred hhcHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCC----------cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHH
Q 039940 21 LEILPAMVAGVWSD--DNSMQLEAATQFRRLLSIERSL----------PIDEVIQAGIVPRFVEFLLREDYPRLQFEAAW 88 (449)
Q Consensus 21 ~~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~----------~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~ 88 (449)
.+.+..+.+.+.+. ++.+|..|+..|.++....... ....-....+-..++..+.+++ +.+ ..++.
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~ 111 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQ 111 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHH
Confidence 34555666777654 6899999999999997542000 0000112234456777888877 677 88999
Q ss_pred HHHHhcCCC-hhhhHHHHhCCChHHHHHhhCCC--ChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccc-
Q 039940 89 VLTNIASGT-SVNTKVLIDHGAVPIFVKLLASP--SDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHA- 163 (449)
Q Consensus 89 ~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~- 163 (449)
+++.++... +.. .-.++++.|+..+.++ ++.+++.++.+|+.++... +..-... ....++.++..+.+..
T Consensus 112 ~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 112 CVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEP 186 (462)
T ss_dssp HHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCC
Confidence 999988632 210 1136789999999888 8999999999999998643 2211111 1235667777774432
Q ss_pred cHHHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHH
Q 039940 164 RLSMLRIGTWTLSNLCKGKP--QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVE 241 (449)
Q Consensus 164 ~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 241 (449)
++.++..+++++.++..... .........+++.+...+.+++++++..++.++..++...+......+..++++.++.
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998764321 0011111235777777788889999999999999988655432221222266777888
Q ss_pred hhCCCCCcchhhHHHHHHHhhcCChh---------------------hHHHHHhcCCHHHHHHHhccC------CchhHH
Q 039940 242 LLGHPSPSVLIPALRTVGNIVTGDDF---------------------QTQCVINHGAVPYLLALLINN------HKKSIK 294 (449)
Q Consensus 242 ll~~~~~~v~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~l~~L~~ll~~~------~~~~v~ 294 (449)
.+.+.+++++..++.++..++..... ..+.. -..+++.++..+... .+..+|
T Consensus 267 ~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~p~l~~~l~~~d~d~~~~~~~~r 345 (462)
T 1ibr_B 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPC 345 (462)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCSHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH-hhhccHHHHHHHHhcccccccccchHH
Confidence 88888889999999999888754200 00000 123566677777432 145789
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC
Q 039940 295 KESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA 374 (449)
Q Consensus 295 ~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~ 374 (449)
..|+.+|..++...++ .+. ..+++.+...+.+.+..+|..|+.+++.++.+..++...... ..+++.+...+.++
T Consensus 346 ~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 346 KAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP 420 (462)
T ss_dssp HHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC
Confidence 9999999999863222 122 146778888888889999999999999999864422211111 45788999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhh
Q 039940 375 DPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 375 ~~~~~~~~~~~l~~l~~~~~~ 395 (449)
++.++..|+++|.+++.....
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999987654
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.62 E-value=8.2e-14 Score=136.31 Aligned_cols=290 Identities=16% Similarity=0.110 Sum_probs=218.1
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
.-.+..+.+.|+++++.++..|+++|.++... + +. ..+++.+..++.+++ +.++..|+.++.++...+++.
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---~----~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~ 176 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS---E----MC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPEL 176 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH---H----HH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH---H----HH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHH
Confidence 45677888888999999999999999998521 1 21 345788899999998 999999999999999866654
Q ss_pred hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc--------------cccHH
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE--------------HARLS 166 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~ 166 (449)
.. ++++.+..++.+.++.++..|+++|..++..++.....+ ...++.++..|.+ ..++-
T Consensus 177 v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 249 (618)
T 1w63_A 177 ME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPF 249 (618)
T ss_dssp GG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH
T ss_pred HH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCCh
Confidence 32 678889999999999999999999999987665432222 3567778877743 24777
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHH
Q 039940 167 MLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH------LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLV 240 (449)
Q Consensus 167 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~ 240 (449)
.+..++.++..++..++ .......+.|..++. +.+..+...+++++..+... +. +.. ..++.|.
T Consensus 250 ~q~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~-~a~~~L~ 319 (618)
T 1w63_A 250 LQVRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRV-LAINILG 319 (618)
T ss_dssp HHHHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHH-HHHHHHH
T ss_pred HHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHH-HHHHHHH
Confidence 88889999999887643 122344555555543 23567888999999887542 21 111 3567888
Q ss_pred HhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Q 039940 241 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGL 320 (449)
Q Consensus 241 ~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 320 (449)
.++.++++.++..|+.+|+.++...+.. + ......++.++.++ +..+|..|..++..++.... +.. +
T Consensus 320 ~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~-~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----i 386 (618)
T 1w63_A 320 RFLLNNDKNIRYVALTSLLKTVQTDHNA----V-QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----M 386 (618)
T ss_dssp HHHTCSSTTTHHHHHHHHHHHHHHHHHH----H-GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----H
T ss_pred HHHhCCCCchHHHHHHHHHHHHhhCHHH----H-HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----H
Confidence 8899999999999999999998754332 2 23567888899988 99999999999999976432 112 3
Q ss_pred hHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 321 IVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 321 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
++.|...+.+.+.+++..+..+++.++..
T Consensus 387 v~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 387 MKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 56777778888899999999999999875
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.62 E-value=1.6e-14 Score=137.25 Aligned_cols=387 Identities=12% Similarity=0.085 Sum_probs=264.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHhcCCChhhhH
Q 039940 24 LPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED-YPRLQFEAAWVLTNIASGTSVNTK 102 (449)
Q Consensus 24 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 102 (449)
+..++..+.++|..+|..|-..|.++.... ..+.+..|+.++.+.+ +..++..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 456677778999999999999998864310 1245667778777652 479999999999999764311110
Q ss_pred H-----------HHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhhcCCHHHHHHHHcccc--cHHHH
Q 039940 103 V-----------LIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLHEEALIPLLAQLNEHA--RLSML 168 (449)
Q Consensus 103 ~-----------~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~ 168 (449)
. -....+-..++..+.++++.+ ..+..+++.++... |.. . -.+.++.++..+ .+. ++.++
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~--w~~ll~~L~~~l-~~~~~~~~~r 147 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--Q--WPELIPQLVANV-TNPNSTEHMK 147 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--C--CTTHHHHHHHHH-HCTTCCHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--c--cHHHHHHHHHHh-ccCCCCHHHH
Confidence 0 011123456778888877778 88899999987543 210 0 134677888888 555 88999
Q ss_pred HHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHcccCChhHHH-HHHHhCcHHHHHHhhC
Q 039940 169 RIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHLD--DEEVLRNVCWTLSNLSDGTNDKIQ-AVIEAGVCGPLVELLG 244 (449)
Q Consensus 169 ~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~L~~ll~ 244 (449)
..++.++..++... +.........+++.+...+.++ ++.++..++.++.++...-.+... .....-+++.+...+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 227 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 99999999999754 2222334467888999999887 799999999999987643321111 0111124667777788
Q ss_pred CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH--------------
Q 039940 245 HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRK-------------- 310 (449)
Q Consensus 245 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-------------- 310 (449)
+++++++..++.++..++...+......+..++++.++..+++. ++.++..|+.++..++.....
T Consensus 228 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (462)
T 1ibr_B 228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 88899999999999999865543322222226778888888887 899999999999988753211
Q ss_pred -------HHHHHHHCCChHHHHHHhhc-------CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCH
Q 039940 311 -------QIQAVIDAGLIVPLVNLLQD-------AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADP 376 (449)
Q Consensus 311 -------~~~~l~~~~~~~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~ 376 (449)
...... ..++|.++..+.. ++..+|..|+.+|..++......... .+++.+...+++.++
T Consensus 307 ~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~ 380 (462)
T 1ibr_B 307 PEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDW 380 (462)
T ss_dssp SSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSH
T ss_pred ccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCCh
Confidence 000011 2356667666643 24578999999999998764322222 357778888889999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940 377 EIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW 445 (449)
Q Consensus 377 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~ 445 (449)
.++..++.++..+......... ... -...++.+..+..++++.++..|...+.++.
T Consensus 381 ~~r~aal~~l~~l~~~~~~~~~-----------~~~--l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 381 RYRDAAVMAFGCILEGPEPSQL-----------KPL--VIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp HHHHHHHHHHHHTSSSSCTTTT-----------CTT--TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHH-----------HHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999864331110 001 1345677788888899999999999988764
No 56
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.60 E-value=2e-13 Score=145.10 Aligned_cols=357 Identities=11% Similarity=0.123 Sum_probs=247.9
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
..++.+++.+.+.|+.+|..|...|.+....... ....-....+++.+++.+.+++ +++|..|+.+|+.++...++.
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~- 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY- 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH-
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH-
Confidence 4578899999999999999999999887654311 1111112245788899999887 899999999999999754431
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh-----hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHH
Q 039940 102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR-----NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLS 176 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~ 176 (449)
.+ ..+++.++..+.++++.+|..++.+|+.++...+... ..-.-...++.++..+.++.+..++..++.++.
T Consensus 83 -~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 83 -QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp -HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred -HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 11 1357888899988889999999999999985432210 001123467788888843578899999999999
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-CCcchhhHH
Q 039940 177 NLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-SPSVLIPAL 255 (449)
Q Consensus 177 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~ 255 (449)
.++...+..-......+++.+...+.++++.++..++.+++.++...++. ++ ..+++.++..+... ++.++..++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence 99865433222345788899999999999999999999999999765432 22 24677777777654 357888999
Q ss_pred HHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh------
Q 039940 256 RTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ------ 329 (449)
Q Consensus 256 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~------ 329 (449)
.+++.++...+..... .-..+++.++..+.+. ++.+|..++.++..++...++.....+. .+++.++..+.
T Consensus 236 ~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----
T ss_pred HHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCC
Confidence 9999987654332211 1246889999999888 8999999999999988632221111111 12333332221
Q ss_pred -------------------------------cCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHH
Q 039940 330 -------------------------------DAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEI 378 (449)
Q Consensus 330 -------------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~ 378 (449)
+...++|..|+.++..++.... +....++ ..+++.+...+.+.++.+
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~-~~l~~~l~~~l~d~~~~V 390 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFY-KTVSPALISRFKEREENV 390 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHH-TTTHHHHHSTTSCSSSHH
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-hHHHHHH-HHHHHHHHHHcCCCchHH
Confidence 1124579999999999987533 2122222 347888888888889999
Q ss_pred HHHHHHHHHHHHHhh
Q 039940 379 VTVCLKGLENILKVG 393 (449)
Q Consensus 379 ~~~~~~~l~~l~~~~ 393 (449)
+..++.++..++...
T Consensus 391 r~~a~~~l~~l~~~~ 405 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQT 405 (1230)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998888653
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.60 E-value=2.6e-13 Score=132.75 Aligned_cols=325 Identities=16% Similarity=0.133 Sum_probs=237.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK 102 (449)
Q Consensus 23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 102 (449)
+...+++++.+++...+..+.-.+..++... + +.+. -+++.+.+-+++++ +.++..|+++|+++.. ++...
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~--~--e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~ 141 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER--Q--DVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR 141 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC--H--HHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC--c--HHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH
Confidence 4455666777777777777777777775421 1 1111 13677888888988 8999999999999985 44332
Q ss_pred HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940 103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
.+++.+.+++.++++.+|..|+.++.++....|+... +.++.+..++ .+.++.++..|++++..++...
T Consensus 142 -----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 142 -----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp -----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSH
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhC
Confidence 4578899999999999999999999999877665322 4566666666 7889999999999999998764
Q ss_pred CCCChhhhhchHHHHHHhhcC---------------CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--
Q 039940 183 PQPPFDQVRPVLPALAQLIHL---------------DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-- 245 (449)
Q Consensus 183 ~~~~~~~~~~~l~~l~~ll~~---------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-- 245 (449)
+.. .......+|.++.+|.+ .++..+..++.++..++..++...+ .+.+.|..++..
T Consensus 211 ~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~ 284 (618)
T 1w63_A 211 PDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTE 284 (618)
T ss_dssp HHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSC
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccc
Confidence 321 22335667777766652 4788999999999999987664322 455566665532
Q ss_pred ----CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCh
Q 039940 246 ----PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321 (449)
Q Consensus 246 ----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~ 321 (449)
.+..+..++++++..+... +... ..+++.|..++.++ ++.+|..|..+|+.++...+.. +. ...
T Consensus 285 ~~~~~~~aV~~ea~~~i~~l~~~-~~l~-----~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~----~~-~~~ 352 (618)
T 1w63_A 285 TSKNVGNAILYETVLTIMDIKSE-SGLR-----VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNA----VQ-RHR 352 (618)
T ss_dssp CSSTHHHHHHHHHHHHHHHSCCC-HHHH-----HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHH----HG-GGH
T ss_pred cccchHHHHHHHHHHHHHhcCCC-HHHH-----HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHH----HH-HHH
Confidence 2346888889988887542 2211 13567888889988 9999999999999998754442 22 356
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940 322 VPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 322 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 393 (449)
+.++..+.+++..+|..|+.++..++...+- .. +++.|...+.+.|.+++..++.++..+....
T Consensus 353 ~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv---~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 353 STIVDCLKDLDVSIKRRAMELSFALVNGNNI---RG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp HHHHHGGGSSCHHHHHHHHHHHHHHCCSSST---HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHcccccH---HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 7888899999999999999999999886432 22 3466677777788999999999999988753
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.54 E-value=9e-13 Score=140.10 Aligned_cols=402 Identities=12% Similarity=0.096 Sum_probs=268.1
Q ss_pred hhcHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 21 LEILPAMVAGVW-SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 21 ~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
...+|.+++.+. ++++.++..|+.+|..++...+...... -..+++.++..+.+++ ..++..|+.+++.++...++
T Consensus 132 ~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~ 208 (1230)
T 1u6g_C 132 KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGN 208 (1230)
T ss_dssp HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhcCH
Confidence 467899999998 5889999999999999875321111111 1345788888899888 89999999999999974432
Q ss_pred hhHHHHhCCChHHHHHhhCCC-ChHHHHHHHHHHHHHhcCCCc-hhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHH
Q 039940 100 NTKVLIDHGAVPIFVKLLASP-SDDVREQAVWALGNIVAHSPG-CRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSN 177 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~ 177 (449)
. + -...++.++..+.+. +...+..++.+++.++...+. +... -...++.++..+ .+.+++++..+++++..
T Consensus 209 ~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~--l~~l~~~ll~~l-~d~~~~vR~~a~~~l~~ 281 (1230)
T 1u6g_C 209 I---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY--LEKIIPLVVKFC-NVDDDELREYCIQAFES 281 (1230)
T ss_dssp ------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS--CTTHHHHHHHHH-SSCCTTTHHHHHHHHHH
T ss_pred H---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Confidence 2 1 224578888877543 346777788888888754332 1111 134677788887 56788899999999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcCC-------------------------------------CHHHHHHHHHHHHHcc
Q 039940 178 LCKGKPQPPFDQVRPVLPALAQLIHLD-------------------------------------DEEVLRNVCWTLSNLS 220 (449)
Q Consensus 178 l~~~~~~~~~~~~~~~l~~l~~ll~~~-------------------------------------~~~~~~~~~~~l~~l~ 220 (449)
++...+.........++|.++..+..+ ..+++..++.++..++
T Consensus 282 l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~ 361 (1230)
T 1u6g_C 282 FVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVV 361 (1230)
T ss_dssp HHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHH
T ss_pred HHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHH
Confidence 988754443345566777776665310 1346888888888888
Q ss_pred cCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh-------------------hhHHHHHhcCCHHHH
Q 039940 221 DGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD-------------------FQTQCVINHGAVPYL 281 (449)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~-------------------~~~~~~~~~~~l~~L 281 (449)
...++....++. .+++.++..+.+.++.++..++.++..++.... ..... .-..+++.+
T Consensus 362 ~~~~~~~~~~~~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ll~~l 439 (1230)
T 1u6g_C 362 STRHEMLPEFYK-TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS-QVPNIVKAL 439 (1230)
T ss_dssp TTCCTTHHHHHT-TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHH-HTTHHHHHH
T ss_pred HhchhHHHHHHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHH-HhhHHHHHH
Confidence 654432333333 678888888888899999999999887764210 11111 123466677
Q ss_pred HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCch--hHHHHHHHHHHHhhccCCHHHHHHHH
Q 039940 282 LALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEF--DIKKEAAWAISNATKAGTQEQIKYLV 359 (449)
Q Consensus 282 ~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~--~v~~~a~~aL~~l~~~~~~~~~~~l~ 359 (449)
...+.++ ++.+|..++.+++.++...+......+ ..+++.++..+.+.++ .++..++.++..+.....++......
T Consensus 440 ~~~l~~~-~~~vr~~~~~~L~~l~~~~~~~l~~~l-~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l 517 (1230)
T 1u6g_C 440 HKQMKEK-SVKTRQCCFNMLTELVNVLPGALTQHI-PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV 517 (1230)
T ss_dssp HHHTTCS-CHHHHHHHHHHHHHHHHHSTTTTGGGH-HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH
T ss_pred HHHhccC-CHHHHHHHHHHHHHHHHHchhhhHHHH-HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH
Confidence 7778888 889999999999998864322111111 2467888888887754 89999999999987644444222222
Q ss_pred HcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHh--cCCCHHHHHHH
Q 039940 360 REGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLK--SHGNNGIREKA 437 (449)
Q Consensus 360 ~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~i~~~a 437 (449)
..+++.|...+++.++.++..++.++..+++.......... ....+|...+ ++.+.... .+.+++++..|
T Consensus 518 -~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~~~~~~~~l-----l~~ll~~l~~~d~~~~vr~~a 589 (1230)
T 1u6g_C 518 -QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSS--FDATPYIKDL-----FTCTIKRLKAADIDQEVKERA 589 (1230)
T ss_dssp -TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCC--CCCHHHHHHH-----HHHHHHHHSCSSSCHHHHHHH
T ss_pred -HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccc--cchHHHHHHH-----HHHHHHHHhccCCCHHHHHHH
Confidence 35899999999998999988999999999876533100000 1122344333 34444443 56778888877
Q ss_pred HHHHHHh
Q 039940 438 VTILETY 444 (449)
Q Consensus 438 ~~~i~~~ 444 (449)
...+..+
T Consensus 590 ~~~lg~L 596 (1230)
T 1u6g_C 590 ISCMGQI 596 (1230)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.51 E-value=3.2e-12 Score=106.57 Aligned_cols=185 Identities=21% Similarity=0.243 Sum_probs=157.2
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh
Q 039940 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF 187 (449)
Q Consensus 108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 187 (449)
+..+.+++.|.++++.+|..|+++|+.+.. ...++.++..+ .+.++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 457899999999999999999999998732 24677888888 78899999999999998753
Q ss_pred hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh
Q 039940 188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF 267 (449)
Q Consensus 188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 267 (449)
...++.+..++.++++.++..++++|+.+.. .+.++.+..++.++++.++..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 2678999999999999999999999998753 2467889999999999999999999998853
Q ss_pred hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940 268 QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNAT 347 (449)
Q Consensus 268 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 347 (449)
...++.|..++.++ ++.+|..|+++|+.+. .+. .++.|..++.++++.+|..|..+|..+-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 24678899999988 9999999999999992 333 5677888888999999999999999874
Q ss_pred c
Q 039940 348 K 348 (449)
Q Consensus 348 ~ 348 (449)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.50 E-value=1.1e-12 Score=110.28 Aligned_cols=187 Identities=21% Similarity=0.230 Sum_probs=156.8
Q ss_pred CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCCh
Q 039940 108 GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPF 187 (449)
Q Consensus 108 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 187 (449)
+.++.|+..|.++++.+|..+++.|+.+.. ...++.++..+ .++++.++..++++|..+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 568999999999999999999999998732 24677888888 67899999999999999863
Q ss_pred hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChh
Q 039940 188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDF 267 (449)
Q Consensus 188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 267 (449)
...++.+..++.++++.++..++++|+.+.. .+.++.|..++.++++.++..|+.+|+.+..
T Consensus 80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 3678999999999999999999999998753 2467889999999999999999999999843
Q ss_pred hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940 268 QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNAT 347 (449)
Q Consensus 268 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 347 (449)
...++.|..++.++ ++.+|..|+++|+.+.. + ..++.|..++.++++.+|..|..+|.++.
T Consensus 142 -------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 24678899999888 99999999999999932 2 25677888899999999999999999987
Q ss_pred ccC
Q 039940 348 KAG 350 (449)
Q Consensus 348 ~~~ 350 (449)
..+
T Consensus 203 ~~~ 205 (211)
T 3ltm_A 203 SFN 205 (211)
T ss_dssp ---
T ss_pred CCC
Confidence 753
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.50 E-value=1.5e-12 Score=109.57 Aligned_cols=187 Identities=20% Similarity=0.182 Sum_probs=157.7
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh
Q 039940 64 AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143 (449)
Q Consensus 64 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 143 (449)
.+.++.|+..|++++ +.++..|+..|+.+.. .+.++.|+.++.++++.+|..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 456899999999988 8999999999998865 1568999999999999999999999999842
Q ss_pred hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT 223 (449)
Q Consensus 144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 223 (449)
.+.++.++..+ +++++.++..++++|..+.. ...++.+..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 24577888888 78899999999999999854 2678999999999999999999999999852
Q ss_pred hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940 224 NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN 303 (449)
Q Consensus 224 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n 303 (449)
...++.|..++.++++.++..++.+|+.+.. ...++.|..++.++ ++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2467889999999999999999999998843 23567788899888 99999999999999
Q ss_pred HhcC
Q 039940 304 ITAG 307 (449)
Q Consensus 304 l~~~ 307 (449)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 8653
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.49 E-value=1.4e-12 Score=108.83 Aligned_cols=185 Identities=19% Similarity=0.187 Sum_probs=158.0
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhh
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVN 100 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 100 (449)
.+..+.+++.|.++++.++..|+..|..+.. .+.++.|++++.+++ +.++..|+++|+.+.. +
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~--~-- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD--E-- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--G--
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC--H--
Confidence 5788999999999999999999999988742 245889999999888 8999999999999864 2
Q ss_pred hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
+.++.|+.++.++++.+|..++++|+++.. ...++.++..+ .++++.++..+++++..+..
T Consensus 76 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 76 -------RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp -------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC
T ss_pred -------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999999832 23567788888 78899999999999999854
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHH
Q 039940 181 GKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGN 260 (449)
Q Consensus 181 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~ 260 (449)
...++.+..++.++++.++..++++|+.+.. + ..++.|..++.++++.++..|..+|..
T Consensus 137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999999999842 1 356788888888999999999999987
Q ss_pred hh
Q 039940 261 IV 262 (449)
Q Consensus 261 l~ 262 (449)
+.
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 64
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.46 E-value=2.6e-10 Score=111.27 Aligned_cols=333 Identities=13% Similarity=0.085 Sum_probs=234.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhH
Q 039940 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTK 102 (449)
Q Consensus 23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 102 (449)
+.+.+++++.+++...+..+.-.+..++... + +.+. =+++.+.+=+++++ +.++..|+++++++.. ++..+
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~--L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~ 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--S--ELIR--LINNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHH--HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--c--HHHH--HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence 4567778888999999888888888886432 2 2111 12566777788888 8999999999999975 55443
Q ss_pred HHHhCCChHHHHHhh--CCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 103 VLIDHGAVPIFVKLL--ASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 103 ~~~~~~~i~~L~~~l--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
.+++.+.+++ .+.++.+|..|+.++.++....|+. +...+.++.+..++ .+.++.++..|+.++..++.
T Consensus 146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence 3478899999 8899999999999999998766543 22246788888888 78899999999999999988
Q ss_pred CCCCCChhhhhchHHHHHHhhcCC-------------CHHHHHHHHHHHHHcccCC-hhHHHHHHHhCcHHHHHHhhC-C
Q 039940 181 GKPQPPFDQVRPVLPALAQLIHLD-------------DEEVLRNVCWTLSNLSDGT-NDKIQAVIEAGVCGPLVELLG-H 245 (449)
Q Consensus 181 ~~~~~~~~~~~~~l~~l~~ll~~~-------------~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~ll~-~ 245 (449)
..+..-.......+..+.+++..+ ++..+..++..+..++... ++....+.+ +++.++..+. .
T Consensus 217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~ 294 (621)
T 2vgl_A 217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEP 294 (621)
T ss_dssp HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSC
T ss_pred hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccC
Confidence 653211111223333444444321 6889999999999998653 333332322 3444443321 1
Q ss_pred C--------C--CcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940 246 P--------S--PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAV 315 (449)
Q Consensus 246 ~--------~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 315 (449)
+ + ..+..+++.++..+.. .++... .++..|..++.++ ++.+|..|...+..++...+. . .+
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~ 365 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EA 365 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HH
T ss_pred cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HH
Confidence 1 2 2677778888877753 232222 3567788888888 999999999999999875431 1 12
Q ss_pred HHCCChHHHHHHhh-cCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940 316 IDAGLIVPLVNLLQ-DAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 316 ~~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 393 (449)
+. ...+.++..+. +++..++..++..+..++. +...+. ++..|...+.+.|.+++..++..+..+....
T Consensus 366 ~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~ 435 (621)
T 2vgl_A 366 VK-THIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKY 435 (621)
T ss_dssp HH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 22 46778888888 8899999999999999985 345554 4556677777788898888888888887554
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.32 E-value=1.3e-08 Score=99.24 Aligned_cols=299 Identities=11% Similarity=0.041 Sum_probs=209.1
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh
Q 039940 65 GIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN 144 (449)
Q Consensus 65 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 144 (449)
.+....++++.+++ ...+..+.-.+..++..+++.... +++.+.+=+.++++.+|..|+++++++.. ++..
T Consensus 74 ~~~~~vvkl~~s~~-~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~- 144 (621)
T 2vgl_A 74 FGHMEAVNLLSSNR-YTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS--REMA- 144 (621)
T ss_dssp SCHHHHHHGGGCSC-HHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHH-
T ss_pred hhHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHH-
Confidence 45778888999988 799999999999999876654432 26788888889999999999999999943 3322
Q ss_pred hHhhcCCHHHHHHHHc-ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940 145 LVLHEEALIPLLAQLN-EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT 223 (449)
Q Consensus 145 ~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 223 (449)
...++.+.+.+. .+.++.+++.|+.++.++....|.... ..+.++.+..+|.+.|+.++..++.++..++..+
T Consensus 145 ----~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~--~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 145 ----EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP--MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp ----HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC--CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC--chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 234556666663 467899999999999999986542221 1478899999999999999999999999998766
Q ss_pred hhHHHHHHHhCcHHHHHHhhCCC-------------CCcchhhHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHHhc---
Q 039940 224 NDKIQAVIEAGVCGPLVELLGHP-------------SPSVLIPALRTVGNIVTGD-DFQTQCVINHGAVPYLLALLI--- 286 (449)
Q Consensus 224 ~~~~~~~~~~~~~~~L~~ll~~~-------------~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~ll~--- 286 (449)
+......+. .++..|..++..+ ++-.+...+..++.++... +.....+.+ .++.++..+.
T Consensus 219 ~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ 295 (621)
T 2vgl_A 219 PEEFKTSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPP 295 (621)
T ss_dssp HHHHTTHHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCC
T ss_pred hHHHHHHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCc
Confidence 542221111 2233333443221 3456777777787777542 333333322 3444443321
Q ss_pred ------cCCc--hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHH
Q 039940 287 ------NNHK--KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYL 358 (449)
Q Consensus 287 ------~~~~--~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l 358 (449)
+. + ..|..+++.++..+. .+++... .++..|..++.+.++++|..|+.+|..++.... . ...
T Consensus 296 ks~~l~~~-n~~~aVl~ea~~~i~~l~-~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~-~-~~~- 365 (621)
T 2vgl_A 296 KSKKVQHS-NAKNAVLFEAISLIIHHD-SEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEF-S-HEA- 365 (621)
T ss_dssp SCSSHHHH-HHHHHHHHHHHHHHHHHC-CCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT-T-HHH-
T ss_pred cccccccc-chHHHHHHHHHHHHHhcC-CcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC-c-HHH-
Confidence 12 2 378888999988885 3444333 256678888888899999999999999998632 1 111
Q ss_pred HHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHh
Q 039940 359 VREGCIKPLCDLLL-CADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 359 ~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~ 392 (449)
+ ......++.++. ++|..++..+++++..++..
T Consensus 366 ~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 366 V-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 2 236777888888 88999999999999888743
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.25 E-value=1.5e-09 Score=83.62 Aligned_cols=218 Identities=16% Similarity=0.199 Sum_probs=175.7
Q ss_pred hCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCC
Q 039940 106 DHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQP 185 (449)
Q Consensus 106 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~ 185 (449)
+..++..++.+|.++-+.++.+|+.++.+++...|+.... .+..++.++.++...........+++.++...|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 4467899999999988999999999999999888775443 355788888788888887788888998887653
Q ss_pred ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC
Q 039940 186 PFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGD 265 (449)
Q Consensus 186 ~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 265 (449)
....+.+|.+..-..-.|++++.+...+|..++..+|.... +++.-+..++.+++..-+..|+.+++.+....
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 45578888888888888999999999999999998886544 56677888999888777888888887776554
Q ss_pred hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHH
Q 039940 266 DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN 345 (449)
Q Consensus 266 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~ 345 (449)
.... ...+|.|..+|.+. +.-||..|.-+|.+++..++..+..+ ..-+.-+++.+..++...-.+|+.
T Consensus 176 ~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred cccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4332 35899999999999 99999999999999999988855433 234455677788899998889888
Q ss_pred hhcc
Q 039940 346 ATKA 349 (449)
Q Consensus 346 l~~~ 349 (449)
+..-
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7654
No 66
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.17 E-value=1.5e-09 Score=87.48 Aligned_cols=225 Identities=17% Similarity=0.184 Sum_probs=174.5
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHH
Q 039940 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 270 (449)
Q Consensus 191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 270 (449)
.+.+..+..+++..|+.++..++.++..+....+.......-..+++.++.++.+.+..+...|+.|+..+..+.+-..+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 46788999999999999999999999999877544444444447899999999999999999999999999887554333
Q ss_pred HHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940 271 CVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 271 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 350 (449)
.+. .+...+..+++++ ++-++.+|+-.++.+-..++.. +++..+.+++.+.+..++..|..++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~-------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSK-------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchH-------HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 333 2677889999988 9999999999999984322111 36678888898889999999999999999863
Q ss_pred -CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHh-cC
Q 039940 351 -TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLK-SH 428 (449)
Q Consensus 351 -~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~ 428 (449)
+++.. .+++.-+-.+++++|+.+++.|+.++..++...-.. +...... +.......+. ..
T Consensus 182 ~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~----------~~~~~~~---~~~~~v~~l~~~~ 243 (265)
T 3b2a_A 182 ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE----------NVKIELL---KISRIVDGLVYRE 243 (265)
T ss_dssp SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS----------CCHHHHH---HHHHHHHHGGGCS
T ss_pred CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH----------hHHHHHH---HHHHHHHHHHHhc
Confidence 22222 246777888999999999999999999999874331 1122222 3456778887 77
Q ss_pred CCHHHHHHHHHHHHH
Q 039940 429 GNNGIREKAVTILET 443 (449)
Q Consensus 429 ~~~~i~~~a~~~i~~ 443 (449)
..|.++.+|.++.+.
T Consensus 244 ~~~~~~~ka~~v~~~ 258 (265)
T 3b2a_A 244 GAPIIRLKAKKVSDL 258 (265)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHH
Confidence 889999999887664
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.15 E-value=5.1e-09 Score=103.48 Aligned_cols=307 Identities=15% Similarity=0.103 Sum_probs=207.3
Q ss_pred hcHHHHHHHhc---CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHH
Q 039940 22 EILPAMVAGVW---SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLRED-------YPRLQFEAAWVLT 91 (449)
Q Consensus 22 ~~i~~l~~~l~---s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-------~~~~~~~a~~~L~ 91 (449)
+++..+-+.|. ++++.++..|+..|..+..+.+. . ++..|...+.+++ .+.++..|+..|+
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34566666666 66788999999999888765421 1 3666777776544 2578888999999
Q ss_pred HhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHH
Q 039940 92 NIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIG 171 (449)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a 171 (449)
.+..++.. . .+++.|..++.+++..+++.|..+|+.+-.++.. ..++..++..+..+.+..+++.+
T Consensus 463 la~~GS~~--e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~vrR~a 528 (963)
T 4ady_A 463 LAAMGSAN--I-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGNITRGL 528 (963)
T ss_dssp HHSTTCCC--H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHhcCCCC--H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHHHHHHH
Confidence 98764421 1 2467788888877777888888899987544322 12345677766566778999999
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHh-hCCCCCc
Q 039940 172 TWTLSNLCKGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVEL-LGHPSPS 249 (449)
Q Consensus 172 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~ 249 (449)
+..|..+..+. ...++.++..|. +.++-++..++.+++--..+..+. ..++.|+.. ..+.+..
T Consensus 529 algLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 529 AVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred HHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence 99999887665 255666666665 467888888777776444332221 123433333 3456778
Q ss_pred chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh
Q 039940 250 VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ 329 (449)
Q Consensus 250 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~ 329 (449)
+|..|+.+|+.+..++++ .++.++.++.+..++.+|..|+++++.++.+++.. .+++.|..+.+
T Consensus 594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~ 657 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHcc
Confidence 999999999998877542 45566665544449999999999999998865431 25667888889
Q ss_pred cCchhHHHHHHHHHHHhhccCCHH---HHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHH
Q 039940 330 DAEFDIKKEAAWAISNATKAGTQE---QIKYLVREGCIKPLCDLLLC--ADPEIVTVCLKGLE 387 (449)
Q Consensus 330 ~~~~~v~~~a~~aL~~l~~~~~~~---~~~~l~~~~~~~~L~~ll~~--~~~~~~~~~~~~l~ 387 (449)
+.+..|+..|+.+|+.+....+.. .... ....|.....+ +|+..+..+.-+..
T Consensus 658 D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 658 DPVDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 999999999999999998864433 2222 23445555543 35555555544444
No 68
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.09 E-value=3.1e-09 Score=105.05 Aligned_cols=219 Identities=14% Similarity=0.101 Sum_probs=156.4
Q ss_pred HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHH-HhhCCCChHHHHHHHHHHHHHhcC-
Q 039940 61 VIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFV-KLLASPSDDVREQAVWALGNIVAH- 138 (449)
Q Consensus 61 ~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~l~~~~~~~~~~a~~~L~~l~~~- 138 (449)
..+..++| +++.|++++ ++.|..|+++|++++. ++..+..+...+++..++ .+|.+++.++|..|+++|+||+.+
T Consensus 31 ~~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 31 LREDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 34455555 556789998 8999999999999997 788899999988887654 578889999999999999999954
Q ss_pred CCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 039940 139 SPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSN 218 (449)
Q Consensus 139 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~ 218 (449)
.+.....+...|++++|...+.+. . ..+....... ..........+ ..+...++.+|.+
T Consensus 108 g~d~~~~l~~~~il~~L~~~l~~~-~--------~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~l~lL~~ 166 (684)
T 4gmo_A 108 EADFCVHLYRLDVLTAIEHAAKAV-L--------ETLTTSEPPF-SKLLKAQQRLV-----------WDITGSLLVLIGL 166 (684)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHH-H--------HHHHCBTTBG-GGSCHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred CchHHHHHHHcChHHHHHHHHHhh-H--------HHHhhhcccc-ccccHHHHHHH-----------HHHHHHHHHHHHH
Confidence 466777788999999999988321 1 1111111110 00000001111 2344567778888
Q ss_pred cccCChhHHHHHHHhCcHHHHHHhhCCC---CCcchhhHHHHHHHhhcCChhhHHHHHhcCCH---HHHHHHhccCCchh
Q 039940 219 LSDGTNDKIQAVIEAGVCGPLVELLGHP---SPSVLIPALRTVGNIVTGDDFQTQCVINHGAV---PYLLALLINNHKKS 292 (449)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l---~~L~~ll~~~~~~~ 292 (449)
++..++.....+...+.++.++..+.+. ..+++..|+.+|..++..++...+.+.+.+.. ..+..+.++ +..
T Consensus 167 L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~--~~~ 244 (684)
T 4gmo_A 167 LALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG--TDP 244 (684)
T ss_dssp HHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS--SCT
T ss_pred HHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC--CcH
Confidence 8888877777788888899999887543 34689999999999999999888888876543 333333333 334
Q ss_pred HHHHHHHHHHHHh
Q 039940 293 IKKESCWTVSNIT 305 (449)
Q Consensus 293 v~~~a~~~l~nl~ 305 (449)
.+..+++.+.|+.
T Consensus 245 ~~~la~giL~Ni~ 257 (684)
T 4gmo_A 245 RAVMACGVLHNVF 257 (684)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHh
Confidence 5778899999874
No 69
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.07 E-value=6.5e-10 Score=109.87 Aligned_cols=197 Identities=12% Similarity=0.052 Sum_probs=150.8
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHH-HHhhCCCCCcchhhHHHHHHHhhcC-Chhh
Q 039940 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPL-VELLGHPSPSVLIPALRTVGNIVTG-DDFQ 268 (449)
Q Consensus 191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L-~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~ 268 (449)
..++|.+ ..|++++++.|..++++|++++. ++...+.+...+++..+ ..+|.+++.+++..|+++|+|++.. ..+.
T Consensus 34 ~~i~Pll-~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPVL-KDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHHH-HHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHH-HHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 3455654 56899999999999999999996 45555667777888765 5678889999999999999999865 3567
Q ss_pred HHHHHhcCCHHHHHHHhccCCc---------------------hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHH
Q 039940 269 TQCVINHGAVPYLLALLINNHK---------------------KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNL 327 (449)
Q Consensus 269 ~~~~~~~~~l~~L~~ll~~~~~---------------------~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~l 327 (449)
...++..|+++.|..+++.. . ..+...++.+|.+++.++.+....+.+.+.++.|+..
T Consensus 112 ~~~l~~~~il~~L~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAV-LETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHH-HHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhh-HHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 77888999999999988542 1 1244567788999998888888888888999999999
Q ss_pred hhcC---chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChH---HHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940 328 LQDA---EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIK---PLCDLLLCADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 328 l~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~---~L~~ll~~~~~~~~~~~~~~l~~l~~~ 392 (449)
+.+. ..+++..|+.+|..++.. +.+..+.+.+.+... .+..+.+. +...+..++++|.|++..
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVFTS 259 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHhhh
Confidence 8543 468999999999999987 677888887766533 33333333 333466778888888754
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.05 E-value=1.1e-08 Score=91.00 Aligned_cols=279 Identities=13% Similarity=0.067 Sum_probs=166.1
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
..++.++++++++|...+....-.+..++... ++.. + ++..+.+=+++++ +-++-.|+++++++.. ++..
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~ 137 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITD--STML 137 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHH
Confidence 44566778888999999988888888876542 2222 1 3667788889999 8999999999999987 4444
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940 102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 181 (449)
+. +.+.+.+.+.+.++.+|..|+.+..++....|+.. .+++..+-+.+ .+.++.++.+|+.++..+...
T Consensus 138 ~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 138 QA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhh
Confidence 43 35778889999999999999999999988776642 35777887877 778899999999999999876
Q ss_pred CCCCChhhhhchHHHHHHhhcCC---CHHHHHHHHHHHHHcccCC-hhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940 182 KPQPPFDQVRPVLPALAQLIHLD---DEEVLRNVCWTLSNLSDGT-NDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257 (449)
Q Consensus 182 ~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 257 (449)
+ ...+..++..+... ++-.+...++.+..++..+ +. ....+++.+...|++.++.|..+|+++
T Consensus 207 d--------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~ 273 (355)
T 3tjz_B 207 D--------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASA 273 (355)
T ss_dssp C--------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHH
T ss_pred c--------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 4 22444555544432 5777777777777776654 22 123677888889999999999999999
Q ss_pred HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHH
Q 039940 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKK 337 (449)
Q Consensus 258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~ 337 (449)
+..+...... .. ..++..+..++.++ ++.+|..|...|..++...|..... .-..+.+++.+++..+..
T Consensus 274 I~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t 342 (355)
T 3tjz_B 274 IVNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIAT 342 (355)
T ss_dssp HTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------
T ss_pred HHhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence 9887542221 11 23566677788888 9999999999999998766654322 334566778888777766
Q ss_pred HHHHHHHH
Q 039940 338 EAAWAISN 345 (449)
Q Consensus 338 ~a~~aL~~ 345 (449)
.|+.+|..
T Consensus 343 ~Aittllk 350 (355)
T 3tjz_B 343 LAITTLLK 350 (355)
T ss_dssp --------
T ss_pred HHHHHhhh
Confidence 66555543
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.03 E-value=5.8e-08 Score=74.93 Aligned_cols=218 Identities=12% Similarity=0.166 Sum_probs=171.3
Q ss_pred hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhH
Q 039940 148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDK 226 (449)
Q Consensus 148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~ 226 (449)
+..++..++..| ++.--.++.+|+..+.+++...| ......+..|+-+++ +...........+++.++...|+.
T Consensus 30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 445677888888 66667899999999999998864 344566777777765 456777788889999999888876
Q ss_pred HHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 227 IQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 227 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
.+ +++|.+..-..-+++.++.....+|..++..++.... +++.-+..++.++ +..-+..|...++.+..
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk-d~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK-NREDKLTALNFIEAMGE 173 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS-SHHHHHHHHHHHHTCCT
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence 55 5678888888888999999999999999998887654 4566789999988 87778888888887765
Q ss_pred CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHH
Q 039940 307 GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGL 386 (449)
Q Consensus 307 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l 386 (449)
...... ...+|.|..+|.+.+.-||..|..+|.+++.. ++..++. +...+.-+++.+..+...+-.+|
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npklRki------i~~kl~e~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATL-NDKLRKV------VIKRLEELNDTSSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHHHHHH------HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHHHHHH------HHHHHHHhcCcHHHHHHHHHHHH
Confidence 554432 24789999999999999999999999999997 5665553 33445557778888999999999
Q ss_pred HHHHHhh
Q 039940 387 ENILKVG 393 (449)
Q Consensus 387 ~~l~~~~ 393 (449)
..+.-..
T Consensus 242 ~rl~l~e 248 (253)
T 2db0_A 242 SRLLLLE 248 (253)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 8887554
No 72
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.98 E-value=1.6e-08 Score=89.92 Aligned_cols=277 Identities=14% Similarity=0.090 Sum_probs=167.4
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChh
Q 039940 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFD 188 (449)
Q Consensus 109 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 188 (449)
+...+++++.+++..++..+.-.+.+++...++ .++ ++..+.+-+ +++++-++..|+.+++++....
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~iL---v~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~~------ 135 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VII---VTSSLTKDM-TGKEDSYRGPAVRALCQITDST------ 135 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GGG---GHHHHHHHH-HSSCHHHHHHHHHHHHHHCCTT------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HHH---HHHHHHhhc-CCCcHhHHHHHHHHHhcCCCHH------
Confidence 356678899999999999999889888766433 222 566777878 7788999999999999997764
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhh
Q 039940 189 QVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 268 (449)
Q Consensus 189 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 268 (449)
..+.+.+.+.+.+.+.++.++..|+.+...+....++..+ ++++.+.+++.+.++.+...|+.++..+...+..
T Consensus 136 m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~- 209 (355)
T 3tjz_B 136 MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL- 209 (355)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH-
Confidence 4567888899999999999999999999999988876543 7899999999999999999999999998875432
Q ss_pred HHHHHhcCCHHHHHHHhccCC--chhHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHH
Q 039940 269 TQCVINHGAVPYLLALLINNH--KKSIKKESCWTVSNITAGN-RKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISN 345 (449)
Q Consensus 269 ~~~~~~~~~l~~L~~ll~~~~--~~~v~~~a~~~l~nl~~~~-~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~ 345 (449)
.+..++..+.... ++..+......++.++..+ +. ....+++.+...+++.++.|.-+|+.++..
T Consensus 210 --------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~ 276 (355)
T 3tjz_B 210 --------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVN 276 (355)
T ss_dssp --------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC
T ss_pred --------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence 2333444443321 3444444444444444333 22 123566777778888899999999999999
Q ss_pred hhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH
Q 039940 346 ATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL 425 (449)
Q Consensus 346 l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 425 (449)
+.... ... -..++..|..++.++++.++..++..|..+....+. .+.++ -..++.+
T Consensus 277 l~~~~-~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~----------------~v~~~--n~~ie~l 332 (355)
T 3tjz_B 277 LPGCS-AKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS----------------AVTAC--NLDLENL 332 (355)
T ss_dssp -----------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred ccCCC-HHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH----------------HHHHH--HHHHHHH
Confidence 86521 111 123677888889999999999999999988876543 22222 2456778
Q ss_pred hcCCCHHHHHHHHHHH
Q 039940 426 KSHGNNGIREKAVTIL 441 (449)
Q Consensus 426 ~~~~~~~i~~~a~~~i 441 (449)
..++|-.|...|+..+
T Consensus 333 i~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 333 VTDANRSIATLAITTL 348 (355)
T ss_dssp ----------------
T ss_pred ccCCcHhHHHHHHHHh
Confidence 8888888877776543
No 73
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.95 E-value=5.7e-07 Score=81.78 Aligned_cols=322 Identities=11% Similarity=0.142 Sum_probs=197.8
Q ss_pred hCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCC---chhhhHhhcCC-HHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 106 DHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSP---GCRNLVLHEEA-LIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 106 ~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~-i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
+..+...++.+|.. .+.++.+..+..+.-+...+| .....+.+... ...+........+.-.+..++.++..++.
T Consensus 75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 34577889998874 678899999999999988877 33233333222 22233333233445555666666666665
Q ss_pred CCCCCChhhhhchHH--HHHHhhcC-CCHHHHHHHHHHHHHcccCChhHHHHHHHh--CcHHHHHHhhC----CC-----
Q 039940 181 GKPQPPFDQVRPVLP--ALAQLIHL-DDEEVLRNVCWTLSNLSDGTNDKIQAVIEA--GVCGPLVELLG----HP----- 246 (449)
Q Consensus 181 ~~~~~~~~~~~~~l~--~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~~~~L~~ll~----~~----- 246 (449)
..+. ........+. -+...+.+ ++.+.+.-++.++..+...+..+ ..+.+. +.++.++.++. +.
T Consensus 155 ~~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R-~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 155 NGLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred cCCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHH-HHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 4422 3333344444 44455554 23455556788888888665533 334433 23555543322 11
Q ss_pred --------CCcchhhHHHHHHHhhcCChhhHHHHHhcCCH--HHHHHHhccCCchhHHHHHHHHHHHHhcCC----HHHH
Q 039940 247 --------SPSVLIPALRTVGNIVTGDDFQTQCVINHGAV--PYLLALLINNHKKSIKKESCWTVSNITAGN----RKQI 312 (449)
Q Consensus 247 --------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l--~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~----~~~~ 312 (449)
...++..++.|++-++.. ++..+.+...++. +.|+.+++.....++-+-+..++.|+.... ....
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 234578889999988876 4555666655543 567777876657889999999999998754 2223
Q ss_pred HH-HHHCCChHHHHHHhhcC---chhHHHHHHHHHHHhhcc----------------C----CHHHH-HHHHH-------
Q 039940 313 QA-VIDAGLIVPLVNLLQDA---EFDIKKEAAWAISNATKA----------------G----TQEQI-KYLVR------- 360 (449)
Q Consensus 313 ~~-l~~~~~~~~L~~ll~~~---~~~v~~~a~~aL~~l~~~----------------~----~~~~~-~~l~~------- 360 (449)
.. ++..++++ ++..|... |+++.+..-.....+-.. | +|-+. ..|+.
T Consensus 312 ~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 312 KQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 32 33334444 55555443 555554332222211110 0 11111 12222
Q ss_pred -c--CChHHHHhhccC----------CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhc
Q 039940 361 -E--GCIKPLCDLLLC----------ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKS 427 (449)
Q Consensus 361 -~--~~~~~L~~ll~~----------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 427 (449)
+ .+++.|+.++++ .|+.+...|+.=+..+++..+.. ...+.+.|+.+.+.+|+.
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-------------r~i~~~lg~K~~VM~Lm~ 457 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLN 457 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTS
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhc
Confidence 1 247788888873 36778888999999999887754 567789999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 039940 428 HGNNGIREKAVTILETY 444 (449)
Q Consensus 428 ~~~~~i~~~a~~~i~~~ 444 (449)
|+|++|+..|...++++
T Consensus 458 h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 458 HSDSRVKYEALKATQAI 474 (480)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988875
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.94 E-value=6.1e-09 Score=89.28 Aligned_cols=187 Identities=13% Similarity=0.156 Sum_probs=142.7
Q ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhh
Q 039940 110 VPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQ 189 (449)
Q Consensus 110 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 189 (449)
-+.+.+.+++.++..|..++..|..++...+...... -...++.+...+.++.+..++..++.++..++......-...
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3568888899999999999999999986533221100 113455666666347889999999999999997643222344
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC-hh-
Q 039940 190 VRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGD-DF- 267 (449)
Q Consensus 190 ~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~-~~- 267 (449)
...++|.++..+.+.++.++..+..++..+....+ .. .+++.+...+++.++.++..++.+++.+.... +.
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 57889999999999999999999999999986543 11 36788899999999999999999999965442 22
Q ss_pred hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 268 QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 268 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
.....+ ..+++.+..++.+. ++++|..|..+++.++.
T Consensus 169 ~~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred ccHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 112222 25899999999988 99999999999999975
No 75
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.89 E-value=5.9e-07 Score=89.05 Aligned_cols=271 Identities=13% Similarity=0.107 Sum_probs=185.1
Q ss_pred CHHHHHHhhc---CCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCC--------hHHHHHHHHHHHH
Q 039940 66 IVPRFVEFLL---REDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPS--------DDVREQAVWALGN 134 (449)
Q Consensus 66 ~i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--------~~~~~~a~~~L~~ 134 (449)
++..|-..|. +++ +.++.-|+.+|+.+..+... .++..|...+.+++ +.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3555666665 445 78999999999999885432 13677777776544 6788889999998
Q ss_pred HhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHH
Q 039940 135 IVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI-HLDDEEVLRNVC 213 (449)
Q Consensus 135 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~ 213 (449)
...++.. ..++..|...+ .+.+..+.+.++.++..+..+..+ ..++..|+..+ .+.+..+++.+.
T Consensus 464 a~~GS~~-------eev~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSAN-------IEVYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCC-------HHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCC-------HHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence 7654421 12345677777 444455667888888876554321 23344444443 355788999999
Q ss_pred HHHHHcccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchh
Q 039940 214 WTLSNLSDGTNDKIQAVIEAGVCGPLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKS 292 (449)
Q Consensus 214 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 292 (449)
.+|+.+..+.++. ++.++..|. +.++.+|..++.+++.-..+..... .++.|+..+.+..+..
T Consensus 530 lgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 530 VGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCHH
T ss_pred HHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcHH
Confidence 9999887776643 344555544 4677888888888876655533221 3555555554443788
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHh-hcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhc
Q 039940 293 IKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLL-QDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL 371 (449)
Q Consensus 293 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll 371 (449)
+|..|+.+|+.+..++++ .++.++..+ ++.++.+|..|+.+|+.+..+.... .+++.|..+.
T Consensus 594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~ 656 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHc
Confidence 999999999998776642 455566544 5669999999999999998753211 1466777888
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 039940 372 LCADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 372 ~~~~~~~~~~~~~~l~~l~~~ 392 (449)
++.|..|+..|+.+|..+..-
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTT
T ss_pred cCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999877643
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.88 E-value=1.4e-07 Score=76.22 Aligned_cols=188 Identities=15% Similarity=0.181 Sum_probs=150.5
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhh
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
+.+..++.+|+..|+.++..|+.+|.++.+.. +...+...-..+++.++.++.+.+ +.+...|+++|..+..+.|-..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence 46888999999999999999999999998764 333444445667999999999999 8999999999999998666555
Q ss_pred HHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcC
Q 039940 102 KVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKG 181 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 181 (449)
+.+.. ++.++..++.++++-++..++..++.+--.++ . .+.+..+..++ .+.|..++..++.++.+++..
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~------~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-S------KLVRTYINELV-VSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-C------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-h------HHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence 54443 46889999999999999999999999922221 1 23455777888 999999999999999999987
Q ss_pred CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940 182 KPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT 223 (449)
Q Consensus 182 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 223 (449)
..+.. ...+++.-+-.+++++|+.++..++.++..+...+
T Consensus 181 S~D~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 181 SADSG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CSSCC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cCCHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 53322 23466667788899999999999999999887653
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.88 E-value=1e-08 Score=87.87 Aligned_cols=186 Identities=15% Similarity=0.201 Sum_probs=142.7
Q ss_pred HHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHcccCChhHHHHHHH
Q 039940 154 PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRNVCWTLSNLSDGTNDKIQAVIE 232 (449)
Q Consensus 154 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 232 (449)
.+...+ ++.+...+..++..|..+....+.........+++.+...+. +.+..++..++.++..++..-.........
T Consensus 19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 466777 788899999999999999876322212223677889999995 889999999999999998543322222222
Q ss_pred hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHH
Q 039940 233 AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAG-NRKQ 311 (449)
Q Consensus 233 ~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~ 311 (449)
.+++.++..+.+.+..+|..+..++..++.... . ..+++.+...+++. ++.+|..++..|+.+... .++.
T Consensus 98 -~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 98 -ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp -HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence 578999999999999999999999999986532 1 13678889999988 999999999999997653 3321
Q ss_pred -HHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940 312 -IQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 312 -~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 350 (449)
....+. .++|.+..++.+.++++|..|..++..++..-
T Consensus 169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 112222 48899999999999999999999999998753
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.79 E-value=8.3e-08 Score=82.05 Aligned_cols=193 Identities=11% Similarity=0.125 Sum_probs=142.3
Q ss_pred HHHHhhCCCChHHHHHHHHHHHH-HhcCCCchhhhHhh-cCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCC-CCCh-
Q 039940 112 IFVKLLASPSDDVREQAVWALGN-IVAHSPGCRNLVLH-EEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKP-QPPF- 187 (449)
Q Consensus 112 ~L~~~l~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~- 187 (449)
.+...+.+.++.-|..++..|.. ++.+.+.......+ ...+..+...+.++.+..++..++.++..++.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 46677889999999999999999 87554332210001 12355666667567889999999999999997654 3333
Q ss_pred hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHH-HHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 039940 188 DQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAV-IEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD 266 (449)
Q Consensus 188 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 266 (449)
.....++|.++..+.+..+.++..+..++..++...+.....- .+ .+++.++..+++.++.++..++.+|+.++....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 4667889999999998889999988888888775431100000 11 367788899999999999999999999986544
Q ss_pred h---hHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 267 F---QTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 267 ~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
. .....+...+++.+.+++.+. ++.+|..|..+++.++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 2 222233357999999999999 99999999999999874
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.72 E-value=8.7e-08 Score=81.91 Aligned_cols=192 Identities=10% Similarity=0.084 Sum_probs=140.1
Q ss_pred HHHHHcccccHHHHHHHHHHHHH-hhcCCCCCC--hhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHcccCCh-hHHH-
Q 039940 155 LLAQLNEHARLSMLRIGTWTLSN-LCKGKPQPP--FDQVRPVLPALAQLI-HLDDEEVLRNVCWTLSNLSDGTN-DKIQ- 228 (449)
Q Consensus 155 l~~~l~~~~~~~~~~~a~~~l~~-l~~~~~~~~--~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~-~~~~- 228 (449)
+...+ .+.+..-+..++..+.. ++.+.+... ......++..+...+ ...+..++..++.+++.++.+-. ....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44555 67888999999999999 875533322 222356788889999 68899999999999999985322 1111
Q ss_pred HHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 039940 229 AVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN 308 (449)
Q Consensus 229 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~ 308 (449)
.... .+++.++..+++....++..+..++..++...+.......-..+++.|...++++ ++.+|..++.+|+.++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 1222 4789999999998889999988888888764321110000013677888999999 9999999999999998633
Q ss_pred H---HHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 309 R---KQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 309 ~---~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
+ ......+...++|.+..++.+.++++|..|..++..++..
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2 3333444247999999999999999999999999998764
No 80
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.67 E-value=4.8e-06 Score=83.64 Aligned_cols=315 Identities=13% Similarity=0.146 Sum_probs=216.0
Q ss_pred CCchhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 039940 13 PSLNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTN 92 (449)
Q Consensus 13 ~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~ 92 (449)
++++.......+..+++.+...+..-+..|+..+..+..+..... ....+++..+.+.+.+.. .. +.|+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~ 78 (986)
T 2iw3_A 5 HHSDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAH 78 (986)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHH
T ss_pred ccccccchHHHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHH
Confidence 345666667777788888876555556778888888876431111 111256778888888765 23 889999999
Q ss_pred hcCCChh--hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHH
Q 039940 93 IASGTSV--NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRI 170 (449)
Q Consensus 93 l~~~~~~--~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~ 170 (449)
++..... ..+.+. .+.++.++....+....++..|-.+...+...-+... + ...++.++..+.....-..+..
T Consensus 79 ~~~~~~~~~~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~ 153 (986)
T 2iw3_A 79 IANQSNLSPSVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIA 153 (986)
T ss_dssp HTCTTTCCTTTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHhcCCCCCcccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHH
Confidence 9953311 222222 2678999999998889999998888887765433221 1 3468889999955556888999
Q ss_pred HHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcc
Q 039940 171 GTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSV 250 (449)
Q Consensus 171 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v 250 (449)
++.++..++...+.........++|.+...+.+..+++...+..++..+|..-++. + + ..++|.|+..+.+++.
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~-d--~-~~~~~~~~~~~~~p~~-- 227 (986)
T 2iw3_A 154 ILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK-D--I-ERFIPSLIQCIADPTE-- 227 (986)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT-T--T-GGGHHHHHHHHHCTTH--
T ss_pred HHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc-c--h-hhhHHHHHHHhcChhh--
Confidence 99999999987644444455889999999999999999998888888777421110 0 1 1578999999988743
Q ss_pred hhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHCCChHHHHHHh
Q 039940 251 LIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA--GNRKQIQAVIDAGLIVPLVNLL 328 (449)
Q Consensus 251 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll 328 (449)
...++..|+.-+....-....+ +=.+|.|..-|... ...+++.++-++.|+|. .+|.....++. ..+|.+....
T Consensus 228 ~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~ 303 (986)
T 2iw3_A 228 VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNF 303 (986)
T ss_dssp HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHT
T ss_pred hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHh
Confidence 4445555544332211111111 11467777778777 78899999999999997 77777766654 5778887776
Q ss_pred hcC-chhHHHHHHHHHHHhhc
Q 039940 329 QDA-EFDIKKEAAWAISNATK 348 (449)
Q Consensus 329 ~~~-~~~v~~~a~~aL~~l~~ 348 (449)
..- +|++|+.|..|+..+..
T Consensus 304 ~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 304 ATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp TTCCSHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHH
Confidence 554 89999999988888844
No 81
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.61 E-value=2.4e-05 Score=71.27 Aligned_cols=324 Identities=13% Similarity=0.097 Sum_probs=196.5
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh---hhhHHHHhCCCh-HHHHH-hhCCCChHHHHHHHHHHHHHhcC
Q 039940 64 AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS---VNTKVLIDHGAV-PIFVK-LLASPSDDVREQAVWALGNIVAH 138 (449)
Q Consensus 64 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i-~~L~~-~l~~~~~~~~~~a~~~L~~l~~~ 138 (449)
......++.+|......++....+..+..+...++ .....+.+..-. ..+.. ++..++.-....+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 45678899999877668999999999999998766 444444444322 22333 33444455556666666666543
Q ss_pred CCchhhhHhhcCCHH--HHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhh--hhchHHHHHHhhcC-----------
Q 039940 139 SPGCRNLVLHEEALI--PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQ--VRPVLPALAQLIHL----------- 203 (449)
Q Consensus 139 ~~~~~~~~~~~~~i~--~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~l~~ll~~----------- 203 (449)
.+...+.. ...+. .++..+.+..+...+..++.++..|.+.+..+.... ....+|.++.++..
T Consensus 156 ~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 33311111 11222 355555332334456678888888887753332221 12345555443321
Q ss_pred ----C--CHHHHHHHHHHHHHcccCChhHHHHHHHhCcH--HHHHHhhCC-CCCcchhhHHHHHHHhhcCCh----hhHH
Q 039940 204 ----D--DEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVC--GPLVELLGH-PSPSVLIPALRTVGNIVTGDD----FQTQ 270 (449)
Q Consensus 204 ----~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~----~~~~ 270 (449)
+ ...++..++.|++-++...+ ..+.+...++. ..|+..++. ..+.+..-++.++.|+..... ....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1 35567889999998886654 44545554433 455665655 456788889999999987652 2222
Q ss_pred -HHHhcCCHHHHHHHhccCC--chhHHHHHHHHHHHHhc-----C-CHHHHH----------------HHHH--------
Q 039940 271 -CVINHGAVPYLLALLINNH--KKSIKKESCWTVSNITA-----G-NRKQIQ----------------AVID-------- 317 (449)
Q Consensus 271 -~~~~~~~l~~L~~ll~~~~--~~~v~~~a~~~l~nl~~-----~-~~~~~~----------------~l~~-------- 317 (449)
.++..++++ ++..|.... |+++....-+..-.+-. . -++... .++.
T Consensus 313 ~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 333344544 555554321 55554443332222211 0 011111 1221
Q ss_pred --CCChHHHHHHhhc----------CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHH
Q 039940 318 --AGLIVPLVNLLQD----------AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKG 385 (449)
Q Consensus 318 --~~~~~~L~~ll~~----------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~ 385 (449)
..++..|+++|.. .++.+...||.=++.++.+ -|+.+..+-+-|+=+.++.++.++|++|+..|+.+
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 1257889999973 3788999999999999998 46667766678999999999999999999999999
Q ss_pred HHHHHHh
Q 039940 386 LENILKV 392 (449)
Q Consensus 386 l~~l~~~ 392 (449)
+..++..
T Consensus 471 vQklm~~ 477 (480)
T 1ho8_A 471 TQAIIGY 477 (480)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998854
No 82
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.58 E-value=1e-08 Score=78.43 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=91.3
Q ss_pred hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 039940 233 AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312 (449)
Q Consensus 233 ~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~ 312 (449)
...++.+..+|+++++.+|..|+++|+.+... .++.|..+++++ ++.+|..|+++|+++.. +.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~-- 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER-- 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence 35678899999999999999999998766321 258899999988 99999999999999842 22
Q ss_pred HHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHH
Q 039940 313 QAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLEN 388 (449)
Q Consensus 313 ~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~ 388 (449)
.++.|+..+.++++.||..|+++|.++.. ++ .++.|..+++++++.++..+..+|.+
T Consensus 74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 47788889999999999999999999852 22 46778888888999999999988764
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.56 E-value=1.8e-08 Score=77.08 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=93.3
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh
Q 039940 64 AGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR 143 (449)
Q Consensus 64 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 143 (449)
...++.+..+|++++ +.++..|+++|+++.. ..++.|+.++.++++.+|..++++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 456788999999988 7999999998887653 126899999999999999999999998842
Q ss_pred hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHc
Q 039940 144 NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNL 219 (449)
Q Consensus 144 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l 219 (449)
...++.++..+ +++++.++..++++|..+.. ...++.|..+++++++.++..+.++|..+
T Consensus 72 -----~~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -----ERAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 12477888888 78899999999999999863 36789999999989999999999988754
No 84
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.56 E-value=0.00012 Score=75.83 Aligned_cols=349 Identities=9% Similarity=-0.004 Sum_probs=198.4
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh--
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS-- 98 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-- 98 (449)
...=..+++.+.++...++...+.++..++.......+ .++++.|++.+++++ ...+..++.++..++....
T Consensus 84 ~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~ 157 (960)
T 1wa5_C 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPL 157 (960)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 33345666776666688888888889888765422223 456899999998887 6888999999999987321
Q ss_pred ----hhhHHH---HhCCChHHHHH-------hhCCCCh---------HHHHHHHHHHHHHhcC-CCchhhhHhhcCCHHH
Q 039940 99 ----VNTKVL---IDHGAVPIFVK-------LLASPSD---------DVREQAVWALGNIVAH-SPGCRNLVLHEEALIP 154 (449)
Q Consensus 99 ----~~~~~~---~~~~~i~~L~~-------~l~~~~~---------~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~ 154 (449)
+.+..+ .. ...+.++. .+.++.. ++...++.+++++... .|..-...+ ...++.
T Consensus 158 ~~~~~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~ 235 (960)
T 1wa5_C 158 FRSDELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGI 235 (960)
T ss_dssp CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHH
T ss_pred hcChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHH
Confidence 222211 11 12333333 2443221 2333466777766532 232211000 112333
Q ss_pred HHHHHccc-----cc---------HHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-----CCCHHHHHHHHHH
Q 039940 155 LLAQLNEH-----AR---------LSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH-----LDDEEVLRNVCWT 215 (449)
Q Consensus 155 l~~~l~~~-----~~---------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-----~~~~~~~~~~~~~ 215 (449)
+...+... .+ ..++..++.++..+....+..-......+++.....+. ..+..++..++..
T Consensus 236 ~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~f 315 (960)
T 1wa5_C 236 FHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSF 315 (960)
T ss_dssp HHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHH
T ss_pred HHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 44444221 11 24677788888877755422111223455566666554 3357888888888
Q ss_pred HHHcccCChhHHH----HHHHhCcH-HHHHHhhCC-----------------------CCCcchhhHHHHHHHhhcCChh
Q 039940 216 LSNLSDGTNDKIQ----AVIEAGVC-GPLVELLGH-----------------------PSPSVLIPALRTVGNIVTGDDF 267 (449)
Q Consensus 216 l~~l~~~~~~~~~----~~~~~~~~-~~L~~ll~~-----------------------~~~~v~~~a~~~l~~l~~~~~~ 267 (449)
+..++........ ..+. .++ ..++..+.- .....|..|..+|..++...++
T Consensus 316 l~~~~~~~~~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~ 394 (960)
T 1wa5_C 316 LTAVTRIPKYFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV 394 (960)
T ss_dssp HHHHHTSHHHHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH
T ss_pred HHHHhCcHhHHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch
Confidence 8887754321100 0111 122 233333321 1124667777888777765432
Q ss_pred hHHHHHhcCCHHHHHHHhc------cCCchhHHHHHHHHHHHHhcC---CHH---------HHHHHHHCCChHHHHHHhh
Q 039940 268 QTQCVINHGAVPYLLALLI------NNHKKSIKKESCWTVSNITAG---NRK---------QIQAVIDAGLIVPLVNLLQ 329 (449)
Q Consensus 268 ~~~~~~~~~~l~~L~~ll~------~~~~~~v~~~a~~~l~nl~~~---~~~---------~~~~l~~~~~~~~L~~ll~ 329 (449)
. +. ..+++.+...+. +. +...|..|..+++.++.+ ... ....++. ..++..+.
T Consensus 395 ~---v~-~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~ 465 (960)
T 1wa5_C 395 L---VT-NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLT 465 (960)
T ss_dssp H---HH-HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHH
T ss_pred h---HH-HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhc
Confidence 1 11 123445555554 44 677888999999999752 110 1112211 12333345
Q ss_pred cC---chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940 330 DA---EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 330 ~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 392 (449)
+. ++.+|..|+|+++.++..-.++.... +++.++..+.+.++.++..|+.+|.++++.
T Consensus 466 ~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 466 SNNIPHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CSSCSCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 55 88999999999999988654443222 677888888888899999999999999974
No 85
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.51 E-value=3e-05 Score=80.25 Aligned_cols=389 Identities=9% Similarity=0.024 Sum_probs=216.4
Q ss_pred hhcHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCC---------CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 039940 21 LEILPAMVAGVWS--DDNSMQLEAATQFRRLLSIER---------SLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWV 89 (449)
Q Consensus 21 ~~~i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~ 89 (449)
.+....+.+.+.+ .+..+|..|+..|.+.....- .+..+..++. .++..+.++. ..++..++.+
T Consensus 34 p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~----~ll~~l~~~~-~~ir~~l~~~ 108 (960)
T 1wa5_C 34 DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIVPLMISLP-NNLQVQIGEA 108 (960)
T ss_dssp TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHHHHHHHSC-HHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH----HHHHHHHhCC-HHHHHHHHHH
Confidence 3455567777644 467899999999999875421 1112223333 3455555556 7899999999
Q ss_pred HHHhcCC-ChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC------chhhhHh--hcCCHHHHHHH--
Q 039940 90 LTNIASG-TSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP------GCRNLVL--HEEALIPLLAQ-- 158 (449)
Q Consensus 90 L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~--~~~~i~~l~~~-- 158 (449)
++.++.. .++.. .+.++.|++.+++++...+..++.++..++.... +.+..+. -....++++..
T Consensus 109 ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~ 183 (960)
T 1wa5_C 109 ISSIADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLK 183 (960)
T ss_dssp HHHHHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998862 12111 3578999999988888889999999999986321 1111110 01123333333
Q ss_pred -----Hcccc-c-------HHHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCC------C---------HHHH
Q 039940 159 -----LNEHA-R-------LSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHLD------D---------EEVL 209 (449)
Q Consensus 159 -----l~~~~-~-------~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~------~---------~~~~ 209 (449)
+.+.. + .++...++.++.++.... +..........++.+..++... + ..++
T Consensus 184 ~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk 263 (960)
T 1wa5_C 184 TVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVK 263 (960)
T ss_dssp HHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHH
Confidence 22211 1 133344666777666443 2211122244555656655321 1 2467
Q ss_pred HHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhC-----CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHH----
Q 039940 210 RNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLG-----HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPY---- 280 (449)
Q Consensus 210 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~---- 280 (449)
..++.++..+....++.....+. .+++.....+. .....++..++..+..++.... ....+...+.++.
T Consensus 264 ~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~~~~~~~~~~l~~li~~ 341 (960)
T 1wa5_C 264 SSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-YFEIFNNESAMNNITEQ 341 (960)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-HHGGGCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-HHHHHcCchHHHHHHHH
Confidence 78888888877655543332222 45555666553 2345677888888887765321 1111000012222
Q ss_pred -HHHHhcc----------------------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhh------cC
Q 039940 281 -LLALLIN----------------------NHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQ------DA 331 (449)
Q Consensus 281 -L~~ll~~----------------------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~------~~ 331 (449)
++..+.- ......|..|..+|..++...++.. +. .+++.+...+. +.
T Consensus 342 ~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~-~~l~~i~~~l~~~~~~~~~ 417 (960)
T 1wa5_C 342 IILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TN-IFLAHMKGFVDQYMSDPSK 417 (960)
T ss_dssp THHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHHHHHC----
T ss_pred HhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HH-HHHHHHHHHHHHhccCcch
Confidence 2223210 1012467778888888876443221 11 13344444454 34
Q ss_pred chhHHHHHHHHHHHhhccCC-HH----------HHHHHHHcCChHHHHhhccCC---CHHHHHHHHHHHHHHHHhhhhhh
Q 039940 332 EFDIKKEAAWAISNATKAGT-QE----------QIKYLVREGCIKPLCDLLLCA---DPEIVTVCLKGLENILKVGEAKK 397 (449)
Q Consensus 332 ~~~v~~~a~~aL~~l~~~~~-~~----------~~~~l~~~~~~~~L~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~ 397 (449)
+...|+.|+.+++.++..+. .+ ....++..-+++ .+.+. ++.++..+++++..+......
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-- 491 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLTK-- 491 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSCH--
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCCH--
Confidence 67889999999999986421 00 122222111233 33444 788999999999988865321
Q ss_pred ccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 039940 398 NRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYWL 446 (449)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~~ 446 (449)
.+... .++.+.+...++++.++..|...+.++..
T Consensus 492 ----------~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 492 ----------AQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp ----------HHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ----------HHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 11222 23444445556789999999999998765
No 86
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.43 E-value=7.2e-06 Score=70.89 Aligned_cols=187 Identities=13% Similarity=0.090 Sum_probs=142.0
Q ss_pred HHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HC
Q 039940 240 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVI-DA 318 (449)
Q Consensus 240 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~ 318 (449)
+..|.+++.+.+..+++-|..+...+......++..+++..|+.+.... +...+..+..++.++..+. ....-++ ..
T Consensus 124 iekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~~ 201 (339)
T 3dad_A 124 LEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFV-DGMLGVVAHS 201 (339)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSH-HHHHHHHHCH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhcc-ccccchhCCH
Confidence 3444456667788899999986666688889999999999999999998 9999999999999998753 3343444 34
Q ss_pred CChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHH--------cC--ChHHHHhhcc---CCCHHHHHHHHHH
Q 039940 319 GLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVR--------EG--CIKPLCDLLL---CADPEIVTVCLKG 385 (449)
Q Consensus 319 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~~--~~~~L~~ll~---~~~~~~~~~~~~~ 385 (449)
.++..+..++.+.+..|.+.|+..|..++...+ .....+.+ .| .+..|+..++ +.|.+++..++..
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 578888999988889999999999999988742 12222111 22 3778999997 6789999999999
Q ss_pred HHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCC--CHHHHHH
Q 039940 386 LENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHG--NNGIREK 436 (449)
Q Consensus 386 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~i~~~ 436 (449)
+..++...+.... ...+...+.+.|.-..+...+... +++++++
T Consensus 281 IN~lL~~apd~d~-------~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 281 INKTLAALPDQDS-------FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHCSSHHH-------HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHhcCCChhH-------HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 9999988664321 235778888889888888866655 6666554
No 87
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.42 E-value=0.00017 Score=74.13 Aligned_cols=341 Identities=12% Similarity=0.090 Sum_probs=187.5
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHH-HhhcCCCCHHHHHHHHHHHHHhcCC-C--h--hhhHHHHh
Q 039940 33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFV-EFLLREDYPRLQFEAAWVLTNIASG-T--S--VNTKVLID 106 (449)
Q Consensus 33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~~~~~~a~~~L~~l~~~-~--~--~~~~~~~~ 106 (449)
++++++...++.++....+ --+...+.+.+.++.++ .++.+ ++.+..|+.+|..+... . + ..-..+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 3556777777888887764 34566778889999999 88853 78999999999999872 2 2 11111110
Q ss_pred --CCChHHH--------------HHhhCCCChHHHHHHHHHHHHHhcCC-------CchhhhHhhcCCHHHHHHHHcccc
Q 039940 107 --HGAVPIF--------------VKLLASPSDDVREQAVWALGNIVAHS-------PGCRNLVLHEEALIPLLAQLNEHA 163 (449)
Q Consensus 107 --~~~i~~L--------------~~~l~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~ 163 (449)
.+.++.+ .......+.+.....+.++..+.... +..+..+ ..++..++..- ...
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l--~~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHH--HHHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHH--HHHHHHHHHhh-CCC
Confidence 0111111 11112234666666666665554321 1111111 01122333322 456
Q ss_pred cHHHHHHHHHHHHHhhcCCCC--CChhhh----hchHHHHHHhhcCCC--------------------HH-----HHHHH
Q 039940 164 RLSMLRIGTWTLSNLCKGKPQ--PPFDQV----RPVLPALAQLIHLDD--------------------EE-----VLRNV 212 (449)
Q Consensus 164 ~~~~~~~a~~~l~~l~~~~~~--~~~~~~----~~~l~~l~~ll~~~~--------------------~~-----~~~~~ 212 (449)
+.++...++.....+..+... ...... ..+++.++.-+.-+. .+ ..+.+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 788888887776666653211 112222 344455554443221 00 11123
Q ss_pred HHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC-
Q 039940 213 CWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNH- 289 (449)
Q Consensus 213 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~- 289 (449)
+..+.++.. ++..+ -+++.+...+.+ .++..++.++++++.++.+..+....-.-..+++.|+.++.+..
T Consensus 437 L~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 437 LVYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp HHHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 322322221 11111 123444444444 57889999999999998775443222222347788888886411
Q ss_pred ---chhHHHHHHHHHHHHhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHH-------
Q 039940 290 ---KKSIKKESCWTVSNITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIK------- 356 (449)
Q Consensus 290 ---~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~------- 356 (449)
...++..++|+++.++. ..++... .++..|+..+.++++.++..|++++.+++..+......
T Consensus 510 ~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~ 584 (1023)
T 4hat_C 510 KDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred CcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 34566778899998875 2333322 24556777777778899999999999999854332210
Q ss_pred HHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 357 YLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 357 ~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
.+++ ..+..+......-+++-+..+.+++..++...+.
T Consensus 585 p~~~-~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 585 PFIQ-TIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp CHHH-HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred hhHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 0011 1233334444445666677888888888876543
No 88
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.39 E-value=3.2e-05 Score=77.80 Aligned_cols=299 Identities=15% Similarity=0.171 Sum_probs=206.1
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC---chhhhH
Q 039940 70 FVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP---GCRNLV 146 (449)
Q Consensus 70 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~ 146 (449)
+++-+...+ ..-+..++..+.++..+..... ....+++..+.+.+.+.... +.|+.++..++.... .....+
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 444455543 3334566667777665321111 11125677777777754333 999999999985432 222233
Q ss_pred hhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHcccCChh
Q 039940 147 LHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD-DEEVLRNVCWTLSNLSDGTND 225 (449)
Q Consensus 147 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~ 225 (449)
. +.++.++..+ .+....|+..|-.+...+....+. .....++|.+...+.+. ....+..++.++..++...++
T Consensus 94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence 2 5678888887 566778998888888887776432 22367899999988765 689999999999999976665
Q ss_pred HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC--ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940 226 KIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG--DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN 303 (449)
Q Consensus 226 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n 303 (449)
.....+. +++|.+...+.+..+++...|..++..+|.. +.+. ...+|.|++.+.++ +. .-++...|+.
T Consensus 168 ~~~~~~~-~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p-~~--~~~~~~~l~~ 237 (986)
T 2iw3_A 168 QVALRMP-ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADP-TE--VPETVHLLGA 237 (986)
T ss_dssp HHHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCT-TH--HHHHHHHHTT
T ss_pred HHHHhcc-chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcCh-hh--hHHHHHHhhc
Confidence 4443332 6899999999999999999999999888753 2222 24789999999877 33 3344444444
Q ss_pred Hhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC-CHHHHHHHHHcCChHHHHhhccC-CCHHH
Q 039940 304 ITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG-TQEQIKYLVREGCIKPLCDLLLC-ADPEI 378 (449)
Q Consensus 304 l~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~l~~~~~~~~L~~ll~~-~~~~~ 378 (449)
-+. -..... .+ ++|.|.+-|......+++.++-.+.||+.-- ++.....|+. .+++.+....+. .+|++
T Consensus 238 ~tfv~~v~~~~l-~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~ 311 (986)
T 2iw3_A 238 TTFVAEVTPATL-SI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEA 311 (986)
T ss_dssp CCCCSCCCHHHH-HH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHH
T ss_pred CeeEeeecchhH-HH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHH
Confidence 332 122211 11 5788888888889999999999999999863 5666666554 477777777665 69999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 039940 379 VTVCLKGLENILKVGEA 395 (449)
Q Consensus 379 ~~~~~~~l~~l~~~~~~ 395 (449)
|+.+-.++..|.+....
T Consensus 312 r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 312 REVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999887665
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.35 E-value=7e-05 Score=77.70 Aligned_cols=393 Identities=11% Similarity=0.057 Sum_probs=202.2
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHh-------hcCCCC--HHHHHHHHHHHHHhcCCChhhh---
Q 039940 34 DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEF-------LLREDY--PRLQFEAAWVLTNIASGTSVNT--- 101 (449)
Q Consensus 34 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l-------l~~~~~--~~~~~~a~~~L~~l~~~~~~~~--- 101 (449)
++++.+..|+.+|..+............+ ..+++.++.+ +...+. ++.....++.+..++.......
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999998753111111111 1123333332 233331 2666666777776664222111
Q ss_pred ---------HHHHhCCChHHHHHhhCC-----CChHHHHHHHHHHHHHhcC---------CCchhhhHh--hcCCHHHHH
Q 039940 102 ---------KVLIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNIVAH---------SPGCRNLVL--HEEALIPLL 156 (449)
Q Consensus 102 ---------~~~~~~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~---------~~~~~~~~~--~~~~i~~l~ 156 (449)
..+ ...++.++.+... .++++...+++.+..++.. .+....... -...++.++
T Consensus 335 ~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 111 1445666665533 4788999999998888641 111111110 012334444
Q ss_pred HHHccccc--------------HHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-----CCHHHHHHHHHHHH
Q 039940 157 AQLNEHAR--------------LSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL-----DDEEVLRNVCWTLS 217 (449)
Q Consensus 157 ~~l~~~~~--------------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-----~~~~~~~~~~~~l~ 217 (449)
..+....+ .+.+..+..++..++...+ ......+++.+...+.+ .+...++.++.+++
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 44421111 1355666777777775433 23334455555555543 57788999999999
Q ss_pred HcccCChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHH
Q 039940 218 NLSDGTNDKIQAVIEAGVCGPLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKE 296 (449)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 296 (449)
.++..........+. .+++.+..+.. +.++.++..++++++.++..-....+ .+ ..+++.++..+. +.++..
T Consensus 490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~----~~v~~~ 562 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAINLLVRGLN----SSMSAQ 562 (971)
T ss_dssp HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHHHHHHHHHH----SSCHHH
T ss_pred HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHHHHHHHHhC----hHHHHH
Confidence 998765432221111 23332222221 34778999999999998753211111 11 134556666662 568999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhccCC-HHHHHHHHH--cCChHHHHhhc
Q 039940 297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAGT-QEQIKYLVR--EGCIKPLCDLL 371 (449)
Q Consensus 297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~--~~~~~~L~~ll 371 (449)
|++++.+++...........+ +++..+..++..+ +.+.+..+..+++.++.... .+...++.. ...+..+...+
T Consensus 563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~ 641 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAIC 641 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999755544433333 4677777777763 57889999999999987532 233333222 11233333333
Q ss_pred cCC--CHHHH---HHHHHHHHHHHHhhhhhhccC--CCCCcccHHHHHHHhcchHHHHHHHhc-C-CCHHHHHHHHHHHH
Q 039940 372 LCA--DPEIV---TVCLKGLENILKVGEAKKNRG--STIGDVNQYARLVEGAEGFKKIEDLKS-H-GNNGIREKAVTILE 442 (449)
Q Consensus 372 ~~~--~~~~~---~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~-~-~~~~i~~~a~~~i~ 442 (449)
+.. +++-+ ..+++.|..++.......... ..+ ....+...+ ...++.+..+.. . .++++.+.+..++.
T Consensus 642 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~-~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~~~ 718 (971)
T 2x1g_F 642 QADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQP-IVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSAMK 718 (971)
T ss_dssp TC---CHHHHHHHHHHHHHHHHHHHHHTC--------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccccccc-CCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 333 33333 345555555554332110000 000 001112222 223555555532 2 36788888887776
Q ss_pred H
Q 039940 443 T 443 (449)
Q Consensus 443 ~ 443 (449)
+
T Consensus 719 ~ 719 (971)
T 2x1g_F 719 H 719 (971)
T ss_dssp H
T ss_pred H
Confidence 6
No 90
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.29 E-value=1.8e-05 Score=68.43 Aligned_cols=186 Identities=16% Similarity=0.124 Sum_probs=135.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH
Q 039940 194 LPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI 273 (449)
Q Consensus 194 l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 273 (449)
...++.-|.+.+.+.++.++.-|..+...+......+++.+++..|+......+..++..++.++.++..+.+.....+-
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 34455666677888899999999986656666778899999999999999999999999999999999887444333333
Q ss_pred hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH----------CCChHHHHHHhh---cCchhHHHHHH
Q 039940 274 NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID----------AGLIVPLVNLLQ---DAEFDIKKEAA 340 (449)
Q Consensus 274 ~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~----------~~~~~~L~~ll~---~~~~~v~~~a~ 340 (449)
....+..+..++.+. +..|.+.|...|-.++..++.....+.+ ...++.|+.+|. ..+.+++..|+
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 567899999999987 8999999999999998644322222111 224889999997 56899999999
Q ss_pred HHHHHhhccCC-HHHHH----HHHHcCChHHHHhhccCC--CHHHHH
Q 039940 341 WAISNATKAGT-QEQIK----YLVREGCIKPLCDLLLCA--DPEIVT 380 (449)
Q Consensus 341 ~aL~~l~~~~~-~~~~~----~l~~~~~~~~L~~ll~~~--~~~~~~ 380 (449)
..+..+....+ .+.+. .+-+.|+-..+...++.. +++++.
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 88888777644 33233 333455555666667654 555443
No 91
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.28 E-value=9.5e-05 Score=76.70 Aligned_cols=290 Identities=10% Similarity=0.066 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHhcCCChh-hhHHHHhCCChHHHHHhhCC-----CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHH
Q 039940 82 LQFEAAWVLTNIASGTSV-NTKVLIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPL 155 (449)
Q Consensus 82 ~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l 155 (449)
.+..+..++..++...++ ....+ ++.+-..+.+ .+...++.++.+++.++....... ...++.+
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l 506 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRL 506 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHH
Confidence 445666677666653331 11111 2333333332 578899999999999986543221 1233444
Q ss_pred HHHH---c-ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHH
Q 039940 156 LAQL---N-EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVI 231 (449)
Q Consensus 156 ~~~l---~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 231 (449)
+..+ . ++.++.++..++|+++.++..-.. .......+++.++..+. +.++..+++++.++++..........
T Consensus 507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~ 582 (971)
T 2x1g_F 507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA 582 (971)
T ss_dssp HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH
Confidence 4433 2 134788999999999999875422 12456788888888882 78999999999999965543333222
Q ss_pred HhCcHHHHHHhhCCC--CCcchhhHHHHHHHhhcCCh-hhHHHHHhcCCHHHHH----HHhccCC-chhHHHHHHHHHHH
Q 039940 232 EAGVCGPLVELLGHP--SPSVLIPALRTVGNIVTGDD-FQTQCVINHGAVPYLL----ALLINNH-KKSIKKESCWTVSN 303 (449)
Q Consensus 232 ~~~~~~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~----~ll~~~~-~~~v~~~a~~~l~n 303 (449)
+ .++..+..++..+ +.+.+..++.+++.++...+ +.....++ .+++.++ .++.... +...+.....++..
T Consensus 583 ~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~ 660 (971)
T 2x1g_F 583 D-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNM 660 (971)
T ss_dssp H-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 2 5667777777763 45678888889988876422 22222221 2333333 3333321 22233444444444
Q ss_pred Hh---c--CC-----------HHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChH
Q 039940 304 IT---A--GN-----------RKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIK 365 (449)
Q Consensus 304 l~---~--~~-----------~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~ 365 (449)
++ . +. ++....+ -..+++.+..++... +..+.+.++++++.++..-..+...++- ..++
T Consensus 661 L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~--~~~~ 737 (971)
T 2x1g_F 661 ISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQ--DLCL 737 (971)
T ss_dssp HHHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHH--HHHH
T ss_pred HHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHH--HHHH
Confidence 43 2 11 1111122 235788888887653 6799999999999977641111111111 1344
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 039940 366 PLCDLLLCADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 366 ~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 393 (449)
.|...+..... ..+++.+..++...
T Consensus 738 ~l~~~~~~~~~---~~~l~l~~~~i~~~ 762 (971)
T 2x1g_F 738 FIVASFQTRCC---APTLEISKTAIVMF 762 (971)
T ss_dssp HHHHHCC--CC---HHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCc---hHHHHHHHHHHHHh
Confidence 44444444222 23666666666543
No 92
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.25 E-value=0.0024 Score=66.76 Aligned_cols=358 Identities=10% Similarity=0.101 Sum_probs=191.5
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhcc---CCCC--c--H-----HHHHH--cCCHHHHHHhhcCCCCHHHHHHHH
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSI---ERSL--P--I-----DEVIQ--AGIVPRFVEFLLREDYPRLQFEAA 87 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~---~~~~--~--~-----~~~~~--~~~i~~L~~ll~~~~~~~~~~~a~ 87 (449)
+.++.+++.++ .++.....++..|..+... .... . + ..+.. ..+++.+...+.+....+++..++
T Consensus 138 ~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL 216 (1049)
T 3m1i_C 138 EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATL 216 (1049)
T ss_dssp THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 56778888886 4444455555555544321 1011 0 0 11221 122333445555443378999999
Q ss_pred HHHHHhcCCChhhhHHHHhCCChHHHHH-hhCCCChHHHHHHHHHHHHHhcCC--Cc---hhhhHhhcCCHHHHHHHH--
Q 039940 88 WVLTNIASGTSVNTKVLIDHGAVPIFVK-LLASPSDDVREQAVWALGNIVAHS--PG---CRNLVLHEEALIPLLAQL-- 159 (449)
Q Consensus 88 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~~~~~~~i~~l~~~l-- 159 (449)
.++.+...--+ ...+.+...++.+.+ ++ .+++++..|+.+|..+.... +. ....+. ..++.++..+
T Consensus 217 ~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~--~l~~~~l~~l~~ 290 (1049)
T 3m1i_C 217 ESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTV--LFFQNTLQQIAT 290 (1049)
T ss_dssp HHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHH--HHHHHHHHHHHH
Confidence 99998776322 233555677777773 44 37899999999999998653 21 111110 0111222211
Q ss_pred ---------------cccccHHHHHHHHHHHHHhhcCC------CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 039940 160 ---------------NEHARLSMLRIGTWTLSNLCKGK------PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSN 218 (449)
Q Consensus 160 ---------------~~~~~~~~~~~a~~~l~~l~~~~------~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~ 218 (449)
..+.+.+.....+..+..+.... +.........+++.++.+...++.++...++..+..
T Consensus 291 si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~ 370 (1049)
T 3m1i_C 291 SVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHN 370 (1049)
T ss_dssp HTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 01234455555555544332210 111122235667777777777788888888877776
Q ss_pred ccc----C--ChhHHHHHHHhCcHHHHHHhhCCCCC----------------------cchhhHHHHHHHhhcCChhhHH
Q 039940 219 LSD----G--TNDKIQAVIEAGVCGPLVELLGHPSP----------------------SVLIPALRTVGNIVTGDDFQTQ 270 (449)
Q Consensus 219 l~~----~--~~~~~~~~~~~~~~~~L~~ll~~~~~----------------------~v~~~a~~~l~~l~~~~~~~~~ 270 (449)
++. . .......++. .+++.++..+..++. ..+..+..+|..++...+...-
T Consensus 371 l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l 449 (1049)
T 3m1i_C 371 LVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTE 449 (1049)
T ss_dssp HHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 664 1 1111121222 345566665543211 0122344455555533222111
Q ss_pred HHHhcCCHHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHhh-----cCchhHHHHHHHHH
Q 039940 271 CVINHGAVPYLLALLIN-NHKKSIKKESCWTVSNITAGNRKQ-IQAVIDAGLIVPLVNLLQ-----DAEFDIKKEAAWAI 343 (449)
Q Consensus 271 ~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~-~~~l~~~~~~~~L~~ll~-----~~~~~v~~~a~~aL 343 (449)
.-+.+.+-..+.. ..+...+..++++++.++.+.... -..+. ..+++.+..+.. ++++.++..+++++
T Consensus 450 ----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~l 524 (1049)
T 3m1i_C 450 ----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMYVV 524 (1049)
T ss_dssp ----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence 1123444445543 226778899999999997643222 11211 124555555432 23455666788999
Q ss_pred HHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 344 SNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 344 ~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
+.++..- ..+-+.+. .+++.|...+.+.++.++..|+.++.++++.+..
T Consensus 525 gry~~~~-~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 525 GQYPRFL-KAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HHCHHHH-HHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHH-HhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8776431 11112222 2677788888888999999999999999987653
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.21 E-value=0.0005 Score=71.24 Aligned_cols=352 Identities=11% Similarity=0.062 Sum_probs=185.5
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCc-HHH---HHH--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLP-IDE---VIQ--AGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS 95 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~-~~~---~~~--~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 95 (449)
..++.+++.+ ++++.+..|+.++..+......+. ... ++. -+..+.+...+...+ .+.....++.+..++.
T Consensus 241 ~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~ 317 (963)
T 2x19_B 241 ALIQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGE 317 (963)
T ss_dssp HHHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
Confidence 4455566666 357788889999999987531111 111 111 111222222334444 4555556666666654
Q ss_pred CChhhh-------HHHHhCCChHHHHHhhCC-----CChHHHHHHHHHHHHHhcCC--------CchhhhHhh--cCCHH
Q 039940 96 GTSVNT-------KVLIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNIVAHS--------PGCRNLVLH--EEALI 153 (449)
Q Consensus 96 ~~~~~~-------~~~~~~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~~--------~~~~~~~~~--~~~i~ 153 (449)
..+... ..+ ..+++.++.+... .++.+...++..+..++... +........ ...++
T Consensus 318 ~~~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 395 (963)
T 2x19_B 318 NHSRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVD 395 (963)
T ss_dssp HHHHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 211110 111 1445666666654 35666777777777776421 111111100 01233
Q ss_pred HHHHHHccccc--------------HHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh----cCCCHHHHHHHHHH
Q 039940 154 PLLAQLNEHAR--------------LSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLI----HLDDEEVLRNVCWT 215 (449)
Q Consensus 154 ~l~~~l~~~~~--------------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll----~~~~~~~~~~~~~~ 215 (449)
.++..+....+ .+.+..+..++..++...+ ......+++.+...+ .+.+...++.++++
T Consensus 396 ~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~a 472 (963)
T 2x19_B 396 VLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYG 472 (963)
T ss_dssp HHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 33443421111 1224445555655553321 122234444555555 45678889999999
Q ss_pred HHHcccCChhHHHHHHHhCcHHHHHHhh---CCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchh
Q 039940 216 LSNLSDGTNDKIQAVIEAGVCGPLVELL---GHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKS 292 (449)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~~~~L~~ll---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 292 (449)
++.++..-.... ...++.++..+ ..+++.++..++++++.++..-.... ..+ ..+++.++..|. ++.
T Consensus 473 l~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~---~~~ 542 (963)
T 2x19_B 473 FQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALG---NPE 542 (963)
T ss_dssp HHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTT---CGG
T ss_pred HHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhC---Cch
Confidence 999987643211 12233333322 33567799999999999875422221 222 468888998885 368
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhh
Q 039940 293 IKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL 370 (449)
Q Consensus 293 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l 370 (449)
++..|++++.+++..........+ ..++..+..++... +.+.+..+..+++.++.....+.....++ .+++.+...
T Consensus 543 V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-~l~~~l~~~ 620 (963)
T 2x19_B 543 LSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQ 620 (963)
T ss_dssp GHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHH
Confidence 999999999999863322111111 12444555556542 56889999999999987544233322222 134444433
Q ss_pred c----cCC-CHHHHH---HHHHHHHHHHHhh
Q 039940 371 L----LCA-DPEIVT---VCLKGLENILKVG 393 (449)
Q Consensus 371 l----~~~-~~~~~~---~~~~~l~~l~~~~ 393 (449)
+ +.. +++.+. ..+++|..+++..
T Consensus 621 l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~ 651 (963)
T 2x19_B 621 LEKLAEEIPNPSNKLAIVHILGLLSNLFTTL 651 (963)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3 222 444443 5666666666654
No 94
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.15 E-value=0.001 Score=68.46 Aligned_cols=357 Identities=10% Similarity=0.092 Sum_probs=196.5
Q ss_pred hcHHHHHHHhcCCCHHHHHHHHHHHHHHhcc----CCCC-c--H-----HHHHH--cCCHHHHHHhhcCCCCHHHHHHHH
Q 039940 22 EILPAMVAGVWSDDNSMQLEAATQFRRLLSI----ERSL-P--I-----DEVIQ--AGIVPRFVEFLLREDYPRLQFEAA 87 (449)
Q Consensus 22 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~----~~~~-~--~-----~~~~~--~~~i~~L~~ll~~~~~~~~~~~a~ 87 (449)
+.++.+++.++++ +......+..|..+... .... . + +.+.. ..+++.+..++.++..+++...++
T Consensus 138 ~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L 216 (1023)
T 4hat_C 138 EFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATL 216 (1023)
T ss_dssp THHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5677788887654 33444455555554322 1011 1 1 11111 123444445555444478888899
Q ss_pred HHHHHhcCCChhhhHHHHhCCChHHHH-HhhCCCChHHHHHHHHHHHHHhcCC---C--chhhhHhh--cCCHHHH----
Q 039940 88 WVLTNIASGTSVNTKVLIDHGAVPIFV-KLLASPSDDVREQAVWALGNIVAHS---P--GCRNLVLH--EEALIPL---- 155 (449)
Q Consensus 88 ~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~l~~~~~~~~~~a~~~L~~l~~~~---~--~~~~~~~~--~~~i~~l---- 155 (449)
.++.....- -....+.+.+.++.+. .++. +++++..|+.+|..+.... + .+.+.+.. .+.+..+
T Consensus 217 ~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i 292 (1023)
T 4hat_C 217 ESLLRYLHW--IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSV 292 (1023)
T ss_dssp HHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh--CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998872 2355677888999999 8885 6789999999999998632 2 12111110 0111111
Q ss_pred -------HHHH--cccccHHHHHHHHHHHHHhhcCCCC-----CC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940 156 -------LAQL--NEHARLSMLRIGTWTLSNLCKGKPQ-----PP-FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLS 220 (449)
Q Consensus 156 -------~~~l--~~~~~~~~~~~a~~~l~~l~~~~~~-----~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 220 (449)
-..+ ....|.+.....+..+..+...... .. ......++..++.+...++.++...++..-..++
T Consensus 293 ~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~ 372 (1023)
T 4hat_C 293 MPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLV 372 (1023)
T ss_dssp CCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Confidence 1111 1234567777777777655543311 01 1111233446666666678888777776555554
Q ss_pred cC---C---hhHHHHHHHhCcHHHHHHhhCCCCC---------cc-h--------hhHH----HHHHHhhcCCh-hhHHH
Q 039940 221 DG---T---NDKIQAVIEAGVCGPLVELLGHPSP---------SV-L--------IPAL----RTVGNIVTGDD-FQTQC 271 (449)
Q Consensus 221 ~~---~---~~~~~~~~~~~~~~~L~~ll~~~~~---------~v-~--------~~a~----~~l~~l~~~~~-~~~~~ 271 (449)
.. . ......++. .+++.++.-+..+.. +. + .... .+|..++.-.. +..+
T Consensus 373 ~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~- 450 (1023)
T 4hat_C 373 ADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE- 450 (1023)
T ss_dssp HHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHH-
T ss_pred HHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHH-
Confidence 21 0 111111222 355666666665431 11 0 0111 12222221111 1111
Q ss_pred HHhcCCHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCH-HHHHHHHHCCChHHHHHHhhc-----CchhHHHHHHHHHH
Q 039940 272 VINHGAVPYLLALLINN-HKKSIKKESCWTVSNITAGNR-KQIQAVIDAGLIVPLVNLLQD-----AEFDIKKEAAWAIS 344 (449)
Q Consensus 272 ~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~~~~~~L~~ll~~-----~~~~v~~~a~~aL~ 344 (449)
-.++.+.+.+.++ .+...++.++|+++.++.+.. +.-..++. .+++.|++++.. ....++..++|+++
T Consensus 451 ----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG 525 (1023)
T 4hat_C 451 ----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKDNKAVVASDIMYVVG 525 (1023)
T ss_dssp ----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCcchHHHHHHHHHHHH
Confidence 1233444444432 278889999999999987533 32223332 478888888864 34556778889998
Q ss_pred HhhccC--CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 345 NATKAG--TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 345 ~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
..+..- .++..+ .++..|...+.++++.+...|++++.++++.+..
T Consensus 526 ry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 526 QYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp TCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 876541 222222 2567788888778899999999999999987654
No 95
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.09 E-value=0.0018 Score=67.65 Aligned_cols=341 Identities=11% Similarity=0.088 Sum_probs=182.1
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC--hh---hhHHHHh--
Q 039940 34 DDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT--SV---NTKVLID-- 106 (449)
Q Consensus 34 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~~~~-- 106 (449)
++..++..++.++..+..- .....+....+++.+.+.+.. + ++++..|+.+|..+.... +. ....+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~ 281 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence 4577888888888877642 223445566777777743322 4 799999999999998642 21 1111110
Q ss_pred CCChHHHHH-h-------------hCCCChHHHHHHHHHHHHHhc-------CCCchhhhHhhcCCHHHHHHHHcccccH
Q 039940 107 HGAVPIFVK-L-------------LASPSDDVREQAVWALGNIVA-------HSPGCRNLVLHEEALIPLLAQLNEHARL 165 (449)
Q Consensus 107 ~~~i~~L~~-~-------------l~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~~~ 165 (449)
.+++..+.. + -.+.+.+.....+..+..+.. ..+..+..+ ...++.++... ...+.
T Consensus 282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d~ 358 (1049)
T 3m1i_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEER 358 (1049)
T ss_dssp HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSCH
T ss_pred HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCcH
Confidence 122222211 1 112334444455555544322 111111111 12344444444 45577
Q ss_pred HHHHHHHHHHHHhhc----CCCCC--ChhhhhchHHHHHHhhcCC-------------------CH---HHHHHHHHHHH
Q 039940 166 SMLRIGTWTLSNLCK----GKPQP--PFDQVRPVLPALAQLIHLD-------------------DE---EVLRNVCWTLS 217 (449)
Q Consensus 166 ~~~~~a~~~l~~l~~----~~~~~--~~~~~~~~l~~l~~ll~~~-------------------~~---~~~~~~~~~l~ 217 (449)
++...++..+..++. ..... .......+++.++..+.-+ +. ..+..+..+|.
T Consensus 359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 888888888877776 32111 1123355556665555321 10 22334445555
Q ss_pred HcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhcc-----CCc
Q 039940 218 NLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLIN-----NHK 290 (449)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~ 290 (449)
.++...+.. +.. -+.+.+-..+.. .++..++.++++++.++.........-.-..+++.+..+... + .
T Consensus 439 ~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-~ 513 (1049)
T 3m1i_C 439 YLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-K 513 (1049)
T ss_dssp HHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-H
T ss_pred HHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-h
Confidence 555333221 111 123444444543 567789999999999976533321111112245555554332 2 4
Q ss_pred hhHHHHHHHHHHHHhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHH--------HHHH
Q 039940 291 KSIKKESCWTVSNITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQI--------KYLV 359 (449)
Q Consensus 291 ~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~--------~~l~ 359 (449)
+.++..++|+++.++. ..++... .+++.++..+.+.++.|+..|++++.+++..+..... .++
T Consensus 514 ~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~- 587 (1049)
T 3m1i_C 514 AVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI- 587 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH-
Confidence 5566679999998764 2232221 3566788888888899999999999999985433221 111
Q ss_pred HcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940 360 REGCIKPLCDLLLCADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 360 ~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
..++..+..++..-+.+-.....+++..++...+
T Consensus 588 -~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 588 -QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp -HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 1134444445555455555666777777765443
No 96
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.06 E-value=0.0015 Score=67.67 Aligned_cols=337 Identities=12% Similarity=0.089 Sum_probs=186.1
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhh---CCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCC
Q 039940 75 LREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL---ASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEA 151 (449)
Q Consensus 75 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 151 (449)
.+.+ ...++.++.+++.++.+..+.. ...++.++..+ .++++.++..++|+++.++..-....+. -...
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence 4445 6889999999999997543211 12334444433 3357889999999999987532111122 2357
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHcccCCh-hHHH
Q 039940 152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLD--DEEVLRNVCWTLSNLSDGTN-DKIQ 228 (449)
Q Consensus 152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~-~~~~ 228 (449)
++.++..+ ++ +.++..|++++.+++...+..-......+++.+..++... +.+.+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78888887 33 7899999999999997543222233466777777777653 56788888999998876543 3333
Q ss_pred HHHHhCcHHHHHHhh----CCC-CCcchh---hHHHHHHHhhcCCh----------------------hhHHHHHhcCCH
Q 039940 229 AVIEAGVCGPLVELL----GHP-SPSVLI---PALRTVGNIVTGDD----------------------FQTQCVINHGAV 278 (449)
Q Consensus 229 ~~~~~~~~~~L~~ll----~~~-~~~v~~---~a~~~l~~l~~~~~----------------------~~~~~~~~~~~l 278 (449)
..++ .+++.+...+ +.+ +++.+. ..+.+++.+...-. ..... +...++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 685 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHH
Confidence 2333 3444444433 222 333333 33444444432110 00111 223355
Q ss_pred HHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHh----hcC-chhHHHHHHHHHHHhhc--cC
Q 039940 279 PYLLALLINN-HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLL----QDA-EFDIKKEAAWAISNATK--AG 350 (449)
Q Consensus 279 ~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll----~~~-~~~v~~~a~~aL~~l~~--~~ 350 (449)
+.+..++... .+..+.+.++.++..++..-.+.. ...++.++..+ ... .+ ..++.++.++. +.
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~ 756 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAH 756 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCC
Confidence 6666665421 156888999999988764111100 01233333332 221 22 23344444433 21
Q ss_pred CH---HHHHHHHHcCChHHHHhhcc---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccH-HHHHHHhcchHHHHH
Q 039940 351 TQ---EQIKYLVREGCIKPLCDLLL---CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQ-YARLVEGAEGFKKIE 423 (449)
Q Consensus 351 ~~---~~~~~l~~~~~~~~L~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 423 (449)
++ .....+.+ ..+..+..++. ..+++++......+..++......-.. ... +... ++.+.
T Consensus 757 ~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~------~~~~~~~i------~~~~~ 823 (963)
T 2x19_B 757 EPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC------ERLDVKAV------FQCAV 823 (963)
T ss_dssp CTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC------TTSCHHHH------HHHHH
T ss_pred CcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC------CcccHHHH------HHHHH
Confidence 11 12222211 12333444433 246899999999999999877653210 011 2222 23333
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcC
Q 039940 424 DLKSHGNNGIREKAVTILETYWL 446 (449)
Q Consensus 424 ~l~~~~~~~i~~~a~~~i~~~~~ 446 (449)
....+++.++...+...+.+++.
T Consensus 824 ~~l~~~~~~~~~~~l~~l~~l~~ 846 (963)
T 2x19_B 824 LALKFPEAPTVKASCGFFTELLP 846 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHcCCCCHHHHHHHHHHHHHHHh
Confidence 34457888888888888887654
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.91 E-value=0.0002 Score=73.46 Aligned_cols=307 Identities=11% Similarity=0.008 Sum_probs=167.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhh--hHhhcCCHHH
Q 039940 77 EDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRN--LVLHEEALIP 154 (449)
Q Consensus 77 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~ 154 (449)
.+ +++...++.++.....- -....+.+.+.++.+.+++.. ++++..|+.+|..+........+ .+...-.+..
T Consensus 205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 55 78999999999999872 234556667888999998874 89999999999999865432211 1111101111
Q ss_pred HHHHHcc-cccHHHHHHHHHHHHHhh------cCCCC-CC-------hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHc
Q 039940 155 LLAQLNE-HARLSMLRIGTWTLSNLC------KGKPQ-PP-------FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNL 219 (449)
Q Consensus 155 l~~~l~~-~~~~~~~~~a~~~l~~l~------~~~~~-~~-------~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l 219 (449)
.+..+.. ..|.++.+..+..+..++ ...+. .. .....+.++.++.++.+++.++...++..+...
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 1211211 456666554444332221 22221 01 133467889999999988888877766665544
Q ss_pred ccC-----C----hhHHHHHHHhCcHHHHHHhhCCCCC----------------cchhhHHHHHHHhhcCChhhHHHHHh
Q 039940 220 SDG-----T----NDKIQAVIEAGVCGPLVELLGHPSP----------------SVLIPALRTVGNIVTGDDFQTQCVIN 274 (449)
Q Consensus 220 ~~~-----~----~~~~~~~~~~~~~~~L~~ll~~~~~----------------~v~~~a~~~l~~l~~~~~~~~~~~~~ 274 (449)
... . ......++. .+++.++.-+..++. +.|......+..++.-.++..-...-
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 321 0 111121222 355555555554321 12222221122222211211111000
Q ss_pred cCCHHHHHHHhc---cCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HCC----ChHHHHHHhh-----cCchhHHHHHHH
Q 039940 275 HGAVPYLLALLI---NNHKKSIKKESCWTVSNITAGNRKQIQAVI-DAG----LIVPLVNLLQ-----DAEFDIKKEAAW 341 (449)
Q Consensus 275 ~~~l~~L~~ll~---~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~~----~~~~L~~ll~-----~~~~~v~~~a~~ 341 (449)
..+.+.+...+. +. +...++.+..+++.++.+......... ... +++.+..++. ..++.|+..+++
T Consensus 439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~ 517 (980)
T 3ibv_A 439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME 517 (980)
T ss_dssp HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 011122223332 23 567788899999999875322110000 011 3455555554 568999999999
Q ss_pred HHHHhhccCC--HHHHHHHHHcCChHHHHh--hccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 342 AISNATKAGT--QEQIKYLVREGCIKPLCD--LLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 342 aL~~l~~~~~--~~~~~~l~~~~~~~~L~~--ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
+++..+..-. ++... .+++.+++ .+.++++.++..|..++.++++....
T Consensus 518 ~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 518 ILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 9999877521 11111 13555555 55667888999999999999998765
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.75 E-value=0.00046 Score=63.55 Aligned_cols=261 Identities=13% Similarity=0.086 Sum_probs=153.4
Q ss_pred chhhHhhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 039940 15 LNLQTKLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIA 94 (449)
Q Consensus 15 ~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 94 (449)
.+|..+ ..+.|+..|-++.+++|-.|+..|+.++...+.. .|-. ...+ . ..|+++++-++
T Consensus 169 ~eWPfq--fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N-~---DLAvRLLCVLA 228 (800)
T 3oc3_A 169 IENVLD--FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVD-S---KLFSKIYEILV 228 (800)
T ss_dssp CCSGGG--TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHH
T ss_pred CCCHHH--HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------cccc-H---HHHHHHHHHHH
Confidence 456665 8899999999999999999999999998654211 1111 1122 1 44555555555
Q ss_pred CCChhhhHHHHhCCChHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHH
Q 039940 95 SGTSVNTKVLIDHGAVPIFVKLLAS-PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTW 173 (449)
Q Consensus 95 ~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 173 (449)
-+ ... .+.++ .-..||+.|+.+|+.+ ..-|.. ..++..++..+ ....-+++..++-
T Consensus 229 LD--RFG-------------DYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLL 285 (800)
T 3oc3_A 229 TD--KFN-------------DFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLI 285 (800)
T ss_dssp HB--CCB-------------BCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHH
T ss_pred hc--ccc-------------ccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHH
Confidence 31 111 11111 1145788888888887 444332 22333444333 4456778888888
Q ss_pred HHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC--Ccch
Q 039940 174 TLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS--PSVL 251 (449)
Q Consensus 174 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~v~ 251 (449)
.+.++ .+--. . ..++++.++..|.+.|.+|+..++.+|.-++ .++... .++..+-+.|.+-+ ..-.
T Consensus 286 GLKYL-~DLL~-~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSAST 353 (800)
T 3oc3_A 286 ALGYL-KEFVE-D---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSK 353 (800)
T ss_dssp HHHHT-GGGCC-C---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTH
T ss_pred HHHHH-HHHHH-H---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhh
Confidence 88887 11111 1 5677888888888888888888888888887 222223 23444555444422 1223
Q ss_pred hhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC
Q 039940 252 IPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA 331 (449)
Q Consensus 252 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~ 331 (449)
...+..|+.++...... ..+...+|.|...+.+. -..||..+..++..+. +......+ +-+++-.+
T Consensus 354 gSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~ 419 (800)
T 3oc3_A 354 TSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLV--------AEVVLIEE 419 (800)
T ss_dssp HHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCS
T ss_pred HHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCC
Confidence 34455666666543211 11236788888889888 8889998888887775 22222111 22344455
Q ss_pred chhHHHHHHHHHH
Q 039940 332 EFDIKKEAAWAIS 344 (449)
Q Consensus 332 ~~~v~~~a~~aL~ 344 (449)
+.+++..+..+..
T Consensus 420 neeIl~lS~~VWk 432 (800)
T 3oc3_A 420 KDEIREMAIKLLK 432 (800)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 6677776666553
No 99
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.68 E-value=0.011 Score=60.92 Aligned_cols=311 Identities=11% Similarity=0.121 Sum_probs=169.4
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHH-HHhhCCCChHHHHHHHHHHHHHhcCC-CchhhhHhh
Q 039940 71 VEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIF-VKLLASPSDDVREQAVWALGNIVAHS-PGCRNLVLH 148 (449)
Q Consensus 71 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~ 148 (449)
...+.....+++...++.+++.+..= -....+++.+.++.+ ..++. +++++..|+.+|..+.... +.+.+.+.
T Consensus 212 ~~iL~~~~~~~lv~~~L~~L~~~~sW--I~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~- 286 (1073)
T 3gjx_A 212 QFVMENSQNAPLVHATLETLLRFLNW--IPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFE- 286 (1073)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHH-
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHh--cCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHH-
Confidence 33444444478888899999998872 234567788888988 46664 6789999999999988643 22222221
Q ss_pred cCCHHHHHH----HH------------cccccHHHHHHHHHHHHHhhcCCC-----C-CChhhhhchHHHHHHhhcCCCH
Q 039940 149 EEALIPLLA----QL------------NEHARLSMLRIGTWTLSNLCKGKP-----Q-PPFDQVRPVLPALAQLIHLDDE 206 (449)
Q Consensus 149 ~~~i~~l~~----~l------------~~~~~~~~~~~a~~~l~~l~~~~~-----~-~~~~~~~~~l~~l~~ll~~~~~ 206 (449)
..+..++. .+ ....|++.....+.++..+..... . ........++..++.+...+|.
T Consensus 287 -~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ 365 (1073)
T 3gjx_A 287 -TLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEET 365 (1073)
T ss_dssp -HHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCH
T ss_pred -HHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcH
Confidence 11111111 11 122345666666666655443320 0 1112223455566777777888
Q ss_pred HHHHHHHHHHHHcccC----C------h-----------hHHHHHHH---hCcHHHHHHhhCCCCC---------c-chh
Q 039940 207 EVLRNVCWTLSNLSDG----T------N-----------DKIQAVIE---AGVCGPLVELLGHPSP---------S-VLI 252 (449)
Q Consensus 207 ~~~~~~~~~l~~l~~~----~------~-----------~~~~~~~~---~~~~~~L~~ll~~~~~---------~-v~~ 252 (449)
++...++..-..+... . . .....++. ..+...++.-+..++. + +|+
T Consensus 366 ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re 445 (1073)
T 3gjx_A 366 EIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVRE 445 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHH
Confidence 8887766554443311 0 0 01111111 1233444444444321 1 111
Q ss_pred -----------hHH-HHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-CchhHHHHHHHHHHHHhcC-CHH-HHHHHHH
Q 039940 253 -----------PAL-RTVGNIVTGDDFQTQCVINHGAVPYLLALLINN-HKKSIKKESCWTVSNITAG-NRK-QIQAVID 317 (449)
Q Consensus 253 -----------~a~-~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~-~~~-~~~~l~~ 317 (449)
.++ .++..++.-.......+ ..+.+.+.+..+ .+......++|+++.++.. .++ ....+.+
T Consensus 446 ~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~ 521 (1073)
T 3gjx_A 446 FMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT 521 (1073)
T ss_dssp ECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH
Confidence 011 12222222111111111 233444444432 2577889999999999753 322 2223333
Q ss_pred CCChHHHHHHhhcC-----chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940 318 AGLIVPLVNLLQDA-----EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 318 ~~~~~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 392 (449)
+++.|+.+.... ...++...+++++.....- ..+.+.+. .++..|...+.+.++.++..|+.++..+++.
T Consensus 522 --vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl-~~h~~~L~--~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 522 --VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL-RAHWKFLK--TVVNKLFEFMHETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp --HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH-HHCHHHHH--HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred --HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH-HhCHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 777888777544 2345566667887765541 11222222 2678888888899999999999999999998
Q ss_pred hhhh
Q 039940 393 GEAK 396 (449)
Q Consensus 393 ~~~~ 396 (449)
+...
T Consensus 597 C~~~ 600 (1073)
T 3gjx_A 597 CRRH 600 (1073)
T ss_dssp TGGG
T ss_pred HHHH
Confidence 8764
No 100
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.61 E-value=0.00031 Score=72.12 Aligned_cols=304 Identities=11% Similarity=0.041 Sum_probs=165.1
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCC--hhhhHHHHhCCCh
Q 039940 33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGT--SVNTKVLIDHGAV 110 (449)
Q Consensus 33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~i 110 (449)
+.++.+...++.++..... -.....++..+.++.+..++.+ ++++..|+.+|..+.... ++.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 4678888888999988875 3456777778889999998875 689999999999998733 3333333322001
Q ss_pred HHHHHhhC--CCChHHHHHHHHHHHHHh------cCCC-----chhhh--HhhcCCHHHHHHHHcccccHHHHHHHHHHH
Q 039940 111 PIFVKLLA--SPSDDVREQAVWALGNIV------AHSP-----GCRNL--VLHEEALIPLLAQLNEHARLSMLRIGTWTL 175 (449)
Q Consensus 111 ~~L~~~l~--~~~~~~~~~a~~~L~~l~------~~~~-----~~~~~--~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l 175 (449)
...+..+. .++.++.+..++.+..++ ...+ +.+.. -.-.+.++.++.++ .+++.++...++..+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 11122222 456666655555444332 1111 00000 11124677777777 556667777666665
Q ss_pred HHhhcCC---CC--CCh----hhhhchHHHHHHhhcCC-----C-----------HHHHHHHHHHHHHc-ccCChhHHHH
Q 039940 176 SNLCKGK---PQ--PPF----DQVRPVLPALAQLIHLD-----D-----------EEVLRNVCWTLSNL-SDGTNDKIQA 229 (449)
Q Consensus 176 ~~l~~~~---~~--~~~----~~~~~~l~~l~~ll~~~-----~-----------~~~~~~~~~~l~~l-~~~~~~~~~~ 229 (449)
..+.... +. ... .....+++.++.-+.-+ + .+.|.... .+... +.-.++..-.
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence 5544321 11 111 22344555555544421 0 12343333 33222 2212221111
Q ss_pred HHHhCcHHHHHHhhC---CCCCcchhhHHHHHHHhhcCChhhHHHH-----HhcCCHHHHHHHhc-----cCCchhHHHH
Q 039940 230 VIEAGVCGPLVELLG---HPSPSVLIPALRTVGNIVTGDDFQTQCV-----INHGAVPYLLALLI-----NNHKKSIKKE 296 (449)
Q Consensus 230 ~~~~~~~~~L~~ll~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~-----~~~~~l~~L~~ll~-----~~~~~~v~~~ 296 (449)
..-.-+.+.+...+. +.++..++.++.+++.++.+-......+ .-..+++.+..+++ .+ .+.|+..
T Consensus 436 ~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~ 514 (980)
T 3ibv_A 436 YMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLL 514 (980)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHH
Confidence 000011222223332 2468889999999999987633211100 00123455555554 45 7899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc------CchhHHHHHHHHHHHhhccCC
Q 039940 297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD------AEFDIKKEAAWAISNATKAGT 351 (449)
Q Consensus 297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~ 351 (449)
++++++..+.--.. ....++.++..+-+ ++..++..|+.++.+++..+.
T Consensus 515 ~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 515 YMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 99999998751100 12345555555544 467899999999999998753
No 101
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.60 E-value=0.032 Score=57.50 Aligned_cols=296 Identities=14% Similarity=0.131 Sum_probs=158.3
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHH-HHhhcCCCCHHHHHHHHHHHHHhcCCC-hhhhHHHHh--CC
Q 039940 33 SDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRF-VEFLLREDYPRLQFEAAWVLTNIASGT-SVNTKVLID--HG 108 (449)
Q Consensus 33 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~--~~ 108 (449)
+.++++...++.+|..+.+= -....+++.+.++.+ ..++. + ++.+..|+.||..+.... ++....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 45677777778888888642 346678888888888 46664 3 789999999999988632 222222211 11
Q ss_pred ChHHHHHhh-------------CCCChHHHHHHHHHHHHHhcCCCchhhhHhhc-C-------CHHHHHHHHcccccHHH
Q 039940 109 AVPIFVKLL-------------ASPSDDVREQAVWALGNIVAHSPGCRNLVLHE-E-------ALIPLLAQLNEHARLSM 167 (449)
Q Consensus 109 ~i~~L~~~l-------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~-------~i~~l~~~l~~~~~~~~ 167 (449)
++..+..++ ...+.+.....+.++..+... ....+... + ++..++.+- ..++.++
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei 367 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI 367 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence 222222222 122334545555555554321 11122111 1 222233333 4568888
Q ss_pred HHHHHHHHHHhhcC----CC-----C----------CC--hhhhhch----HHHHHHhhcCCC-----------------
Q 039940 168 LRIGTWTLSNLCKG----KP-----Q----------PP--FDQVRPV----LPALAQLIHLDD----------------- 205 (449)
Q Consensus 168 ~~~a~~~l~~l~~~----~~-----~----------~~--~~~~~~~----l~~l~~ll~~~~----------------- 205 (449)
.+.+......|... .+ . .. .....++ ...++.-+..++
T Consensus 368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~ 447 (1073)
T 3gjx_A 368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM 447 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence 88777665544332 11 0 00 1112233 333333333211
Q ss_pred --H------HHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC--CCCcchhhHHHHHHHhhcCChhhHH-HHHh
Q 039940 206 --E------EVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQ-CVIN 274 (449)
Q Consensus 206 --~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~ 274 (449)
. +..+.++..+.++. ...... -..+.+...+.. .++...+.+||+++.++..-.+..+ .++
T Consensus 448 ~d~~~~~ly~~mrd~L~~lt~l~---~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L- 519 (1073)
T 3gjx_A 448 KDTDSINLYKNMRETLVYLTHLD---YVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL- 519 (1073)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHC---HHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-
T ss_pred hhcchHHHHHHHHHHHHHHhcCC---HHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-
Confidence 0 12222332232222 111111 123444444443 3577899999999999754332222 222
Q ss_pred cCCHHHHHHHhccCC--c--hhHHHHHHHHHHHHhc---CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhh
Q 039940 275 HGAVPYLLALLINNH--K--KSIKKESCWTVSNITA---GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNAT 347 (449)
Q Consensus 275 ~~~l~~L~~ll~~~~--~--~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 347 (449)
..+++.|+.+...+. + ..++...+|+++...+ ..++... .++..+++.+.+.++.++..|+.|+..++
T Consensus 520 p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 520 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 246777777775442 2 2355556789988764 2333332 25667778888889999999999999998
Q ss_pred ccCC
Q 039940 348 KAGT 351 (449)
Q Consensus 348 ~~~~ 351 (449)
..+.
T Consensus 595 ~~C~ 598 (1073)
T 3gjx_A 595 QKCR 598 (1073)
T ss_dssp HHTG
T ss_pred HHHH
Confidence 8653
No 102
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.58 E-value=0.0072 Score=52.12 Aligned_cols=292 Identities=14% Similarity=0.123 Sum_probs=170.4
Q ss_pred HHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHH
Q 039940 133 GNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIH-LDDEEVLRN 211 (449)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~ 211 (449)
.++..++....+-+....++..+...+ +.++.++.+..+..+...+... .......+..+|.++..+. +++.++...
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEEe
Confidence 344455555666677888888888888 8889999999999999988764 2233334788999888887 678999999
Q ss_pred HHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCC-------CCcchhhHHHHHHHhhcC-------------------C
Q 039940 212 VCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHP-------SPSVLIPALRTVGNIVTG-------------------D 265 (449)
Q Consensus 212 ~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-------~~~v~~~a~~~l~~l~~~-------------------~ 265 (449)
....++|...+.....+..+..+.+..|-..+... +..-+..||.+++|..+. .
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G 424 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG 424 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence 99999999999887777778889998888765431 222344566655554311 1
Q ss_pred hh---hHHHHHhcCCHHHHHHHhccCC-----chhHHHHHHHHHHHHhcCC--H-HHH----HHHHHCCChHHHHHHhhc
Q 039940 266 DF---QTQCVINHGAVPYLLALLINNH-----KKSIKKESCWTVSNITAGN--R-KQI----QAVIDAGLIVPLVNLLQD 330 (449)
Q Consensus 266 ~~---~~~~~~~~~~l~~L~~ll~~~~-----~~~v~~~a~~~l~nl~~~~--~-~~~----~~l~~~~~~~~L~~ll~~ 330 (449)
+. +...+++.++++.|+..|+-+. -.++|......+.-+.+.. | +.. +.+.+.+.+-.+.-.+.-
T Consensus 425 ~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~sW 504 (619)
T 3c2g_A 425 PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYSW 504 (619)
T ss_dssp HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHHH
Confidence 11 2233456678888988887542 1356666665554444321 0 000 001112222222222210
Q ss_pred -----Cc-------hhHHHHHHHHHHHhhccC-CHHH-HHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhhh
Q 039940 331 -----AE-------FDIKKEAAWAISNATKAG-TQEQ-IKYLVREGCIKPLCDLLLCA--DPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 331 -----~~-------~~v~~~a~~aL~~l~~~~-~~~~-~~~l~~~~~~~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~ 394 (449)
.+ ..+.+.+...|..+.+.+ +... ...+. .+.-=.++++++ .|.....++..-.++++.++
T Consensus 505 a~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~Y---sIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP 581 (619)
T 3c2g_A 505 VFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYSY---SIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP 581 (619)
T ss_dssp HHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTTT---TSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred hhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhee---eccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence 01 122233344444444332 2111 11111 122223445543 45556666666666666665
Q ss_pred hhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 039940 395 AKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETY 444 (449)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~ 444 (449)
-.+. .. .---..++-+.+|+|+++.+.|..++.+|
T Consensus 582 ~~Ad-------------~W--~i~r~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 582 TRAD-------------IW--TIDRPMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp THHH-------------HS--CCCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred chhc-------------cc--eechHHHHHHhcCCCchHHHHHHHHHHhC
Confidence 4321 11 11124567789999999999999998875
No 103
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0015 Score=56.73 Aligned_cols=192 Identities=13% Similarity=0.084 Sum_probs=125.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHH-HHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCCh-
Q 039940 23 ILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPID-EVI--QAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTS- 98 (449)
Q Consensus 23 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~--~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~- 98 (449)
.+| +-+.|.|.++..|..|+..|.+++......... ... -....+.+-..+.+.+ ..++..++.++..++....
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC-
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhh
Confidence 344 567889999999999999999887653211111 111 1234556667888888 8999999999988875211
Q ss_pred ----hhhHHHHhCCChHHHHHh-hCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHH
Q 039940 99 ----VNTKVLIDHGAVPIFVKL-LASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTW 173 (449)
Q Consensus 99 ----~~~~~~~~~~~i~~L~~~-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 173 (449)
.......-..+++.|+.- +.+....++..+..++..++...... .. .+..++..+ ++.++.++..++.
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l~ 161 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAAN 161 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHHH
Confidence 111111223457777764 78888999999999888776433211 11 123444455 6778999998888
Q ss_pred HHHHhhcCCC--CCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCC
Q 039940 174 TLSNLCKGKP--QPP-FDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGT 223 (449)
Q Consensus 174 ~l~~l~~~~~--~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 223 (449)
.|..+..... ... ......+++.+..++.+.|++||..+..++..+...-
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 8887765531 111 2223456677888899999999999999998876543
No 104
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0055 Score=53.12 Aligned_cols=187 Identities=10% Similarity=0.120 Sum_probs=124.8
Q ss_pred HHHhhCCCCCcchhhHHHHHHHhhcCChhhH--HHHH--hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC------
Q 039940 239 LVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCVI--NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN------ 308 (449)
Q Consensus 239 L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~--~~~~--~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~------ 308 (449)
+-.-+.+.+|..|..|+..+..+....+... .... -....+.+...+.+. +..+...++.++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 5577889999999999999988765433211 1111 123456677788888 9999999999999887521
Q ss_pred HHHHHHHHHCCChHHHHHH-hhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 039940 309 RKQIQAVIDAGLIVPLVNL-LQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLE 387 (449)
Q Consensus 309 ~~~~~~l~~~~~~~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~ 387 (449)
........ ..+++.|+.= +.+....++..+..++..++...... .. +++.+...+.+.+|.++..++..|.
T Consensus 93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~~-----~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--TQ-----SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--HH-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--HH-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111111 2456666653 66678889999998888877543211 11 3566778889999999999999999
Q ss_pred HHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940 388 NILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW 445 (449)
Q Consensus 388 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~ 445 (449)
.++........ ....+... +++.+..+..+.+++|+..|..++-.+|
T Consensus 165 ~~l~~fg~~~~------~~k~~l~~-----i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 165 ELMAAFGLTNV------NVQTFLPE-----LLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHTTTTC------CHHHHHHH-----HGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcC------CchhHHHH-----HHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99876432210 01111222 2456778889999999999999987655
No 105
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.49 E-value=0.022 Score=49.30 Aligned_cols=225 Identities=9% Similarity=0.096 Sum_probs=158.2
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChh----HHHHHHHh-CcHHHHHHhhCCCCCcchhhHHHHHHHhhcCC
Q 039940 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTND----KIQAVIEA-GVCGPLVELLGHPSPSVLIPALRTVGNIVTGD 265 (449)
Q Consensus 191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~-~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 265 (449)
.+++..++..+..=+-+.+..+..+..++.+...+ ..+.+.+. .++..|+..- .++++...+-..|..++.+
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~- 153 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRH- 153 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTS-
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHh-
Confidence 47788888888888899999999999888765432 23333321 2333333332 4555665655566666654
Q ss_pred hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHC---CChHHHHHHhhcCchhHHHHHHHH
Q 039940 266 DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDA---GLIVPLVNLLQDAEFDIKKEAAWA 342 (449)
Q Consensus 266 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~---~~~~~L~~ll~~~~~~v~~~a~~a 342 (449)
+.....++..+.+..+.+.+..+ +-++...|..++..+..........++.. .++...-.++.+++.-+|..++..
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 67777788888888999999998 99999999999999876555555566543 357777888999999999999999
Q ss_pred HHHhhccC-CHH-HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhc--ch
Q 039940 343 ISNATKAG-TQE-QIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA--EG 418 (449)
Q Consensus 343 L~~l~~~~-~~~-~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 418 (449)
|+.+...- +.. ..+++-+..-+..++.+|+++...++..|..++.-++....+. .+....+... -.
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~----------~~I~~IL~~Nr~kL 302 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT----------QPILDILLKNQAKL 302 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC----------HHHHHHHHHTHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC----------hHHHHHHHHHHHHH
Confidence 99998841 112 2233333456889999999999999999999998877654432 2344444443 24
Q ss_pred HHHHHHHhcCC
Q 039940 419 FKKIEDLKSHG 429 (449)
Q Consensus 419 ~~~l~~l~~~~ 429 (449)
++-+..+..+.
T Consensus 303 l~fl~~f~~d~ 313 (341)
T 1upk_A 303 IEFLSKFQNDR 313 (341)
T ss_dssp HHHHHHTTTTC
T ss_pred HHHHHhCCCCC
Confidence 56666776554
No 106
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.47 E-value=0.0081 Score=49.64 Aligned_cols=187 Identities=10% Similarity=0.125 Sum_probs=125.1
Q ss_pred CHHHHHHHHHHHHHcccCChhHHHHHHHh-CcHHHHHHh-------hCCCCC--cc--h-hhHHHHHHHhhcCChhhHHH
Q 039940 205 DEEVLRNVCWTLSNLSDGTNDKIQAVIEA-GVCGPLVEL-------LGHPSP--SV--L-IPALRTVGNIVTGDDFQTQC 271 (449)
Q Consensus 205 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~l-------l~~~~~--~v--~-~~a~~~l~~l~~~~~~~~~~ 271 (449)
+++.|+.|+..|+.--+.-++..-.+..+ |.+..|++= +..+.- .. | .+|+..+-.++.+ ++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence 44557777776666444444444444444 555544332 222111 11 1 2344444555654 777778
Q ss_pred HHhcCCHHHHHHHhccCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 039940 272 VINHGAVPYLLALLINNH----KKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNA 346 (449)
Q Consensus 272 ~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 346 (449)
++++++.-.|..+|+... ...+|-.+.++++.+.. .+++.+..+++.+++|..++.++.++.-.|..|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 899988888888886542 24688899999999986 7888999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHH--------cCChHHHH-hhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940 347 TKAGTQEQIKYLVR--------EGCIKPLC-DLLLCADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 347 ~~~~~~~~~~~l~~--------~~~~~~L~-~ll~~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
... .....++.. ..++..++ .+.+++++.+.+.++.+..++.+...
T Consensus 173 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r 227 (268)
T 2fv2_A 173 LLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 227 (268)
T ss_dssp HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred hcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence 874 444444332 11233333 34456788888998888888776544
No 107
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.44 E-value=0.0012 Score=55.88 Aligned_cols=181 Identities=15% Similarity=0.074 Sum_probs=116.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC----ChhhHHHH
Q 039940 197 LAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG----DDFQTQCV 272 (449)
Q Consensus 197 l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~ 272 (449)
+...+.+.|..-+..++..|.......+.......+ .+++.+.--+.+++..+...++.++..+... ...... .
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~-~ 128 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ-E 128 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH-H
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH-H
Confidence 444555566666666666666554333322111111 1233333334467777887887777766421 000111 0
Q ss_pred HhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCC
Q 039940 273 INHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGT 351 (449)
Q Consensus 273 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 351 (449)
--.-++|.|+.-+.++ ...+|..+-.++..+.. .++. .+++.+++-+.+.+..+|..++..+..+....+
T Consensus 129 ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 0123688899988888 78899888887777654 2222 256677788888899999999999999876422
Q ss_pred HHHHHHHHHcCCh---HHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 039940 352 QEQIKYLVREGCI---KPLCDLLLCADPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 352 ~~~~~~l~~~~~~---~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~ 394 (449)
.. ....+ +.+..++.+.|..+|..|+.++..++....
T Consensus 200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 22 23468 999999999999999999999998876653
No 108
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.42 E-value=0.0028 Score=53.65 Aligned_cols=178 Identities=11% Similarity=0.019 Sum_probs=118.5
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc---ccccHHHHHHHHHHHHHhh----cCCC
Q 039940 111 PIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN---EHARLSMLRIGTWTLSNLC----KGKP 183 (449)
Q Consensus 111 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~l~~l~----~~~~ 183 (449)
+.+...|-+.+..-+..++..|.......+. ..+. .+..++..+. -+.+..+...++.++..+. ....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455555566777777777777766543322 1221 2222333221 3567777777777766653 3322
Q ss_pred CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhc
Q 039940 184 QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVT 263 (449)
Q Consensus 184 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~ 263 (449)
.-.......++|.++.-+.++.+.+|..+-.++..+..-.+ -..+++.+..-+++.++.++..++..++.+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 22333346789999999988889999888877766653211 11356778888899999999999999988864
Q ss_pred CChhhHHHHHhcCCH---HHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 264 GDDFQTQCVINHGAV---PYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 264 ~~~~~~~~~~~~~~l---~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
..... ....+ +.+..++.+. |..||..|..++..+-.
T Consensus 197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 32211 24478 9999999999 99999999999987764
No 109
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.35 E-value=0.019 Score=49.79 Aligned_cols=201 Identities=12% Similarity=0.110 Sum_probs=138.6
Q ss_pred HHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchh----hhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940 103 VLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCR----NLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178 (449)
Q Consensus 103 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l 178 (449)
.+...+.+..|+..|..-+-+.|..+..++.++.+.....+ +.+.. -...+..++....++++.-.+-..|...
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 34555888999999998899999999999999987664322 22221 2222333333344555555555566665
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHh---CcHHHHHHhhCCCCCcchhhHH
Q 039940 179 CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEA---GVCGPLVELLGHPSPSVLIPAL 255 (449)
Q Consensus 179 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~ll~~~~~~v~~~a~ 255 (449)
+++..-.......+.+-.+...++.++-++...|..++..+...+.......+.. .++...-.++.+++.-++..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 5554322333334445566677788889999999999988876655444444443 4566777889999999999999
Q ss_pred HHHHHhhcCChh--hH-HHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 256 RTVGNIVTGDDF--QT-QCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 256 ~~l~~l~~~~~~--~~-~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
..|+.+...... .. ..+-+..-+..++.+|+++ +..++.+|..++--+++
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 999999865322 22 2222456788999999999 99999999999888876
No 110
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.05 E-value=0.0058 Score=56.54 Aligned_cols=246 Identities=13% Similarity=0.098 Sum_probs=158.2
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCch--hhhHhhcCCHHHHHHHHc-c--------cccHHHHHHHHHHHHH
Q 039940 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGC--RNLVLHEEALIPLLAQLN-E--------HARLSMLRIGTWTLSN 177 (449)
Q Consensus 109 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~l~~~l~-~--------~~~~~~~~~a~~~l~~ 177 (449)
+...|+.-|-++.+++|..|+.+|+.+....... +.........-.++-.+. + ..-..|++.++.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 5567777778899999999999999987433210 100001122223333331 1 1124799999999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHH
Q 039940 178 LCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRT 257 (449)
Q Consensus 178 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~ 257 (449)
+ ..-+.. ..++..++..+..+..+++..++-.|.++..--.. . .++++.++..|.+.+.+|+..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-----L-d~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-----K-DGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-----H-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-----H-HHHHHHHHhhcCCcccHHHHHHHHH
Confidence 9 555443 24455555566778899999999999998211111 1 2678888899999999999999999
Q ss_pred HHHhhcCChhhHHHHHhcCCHHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHH
Q 039940 258 VGNIVTGDDFQTQCVINHGAVPYLLALLINNHK-KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIK 336 (449)
Q Consensus 258 l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~ 336 (449)
|..++ . ++... .++..+...|.+-.| ..-.......|+.++..... .......+|.|...+...-+.||
T Consensus 323 LiPIA-~-p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR 392 (800)
T 3oc3_A 323 LCHFP-I-TDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR 392 (800)
T ss_dssp HTTSC-C-SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred hhhhc-c-hhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence 98888 2 32222 245556666654312 11233445566666653321 01123678889999999999999
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 039940 337 KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLE 387 (449)
Q Consensus 337 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~ 387 (449)
..++.++..+. +....+.+.+ +++-+++++++..+.++..
T Consensus 393 ~AVL~TL~tfL---~~~~LRLIFQ--------NILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLS---EESIDFLVAE--------VVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCC---CHHHHHHHHH--------HHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hhhHHHHHHH--------HHHhCCcHHHHHHHHHHHH
Confidence 99999998887 2333333333 3455778888888777664
No 111
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.95 E-value=0.065 Score=44.33 Aligned_cols=191 Identities=15% Similarity=0.091 Sum_probs=124.0
Q ss_pred CCcchhhHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHHh-------ccCC-chhHHHHHHH---HHHHHhcCCHHHHHH
Q 039940 247 SPSVLIPALRTVGNIVTGDDFQTQCVIN-HGAVPYLLALL-------INNH-KKSIKKESCW---TVSNITAGNRKQIQA 314 (449)
Q Consensus 247 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~L~~ll-------~~~~-~~~v~~~a~~---~l~nl~~~~~~~~~~ 314 (449)
+++.|+.|+.-|+.=-...++....+.. .|.+..|++=+ ..+. ....-...|. .+..+++ .++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 4556888877776654444444444443 34444443222 1110 1122222333 3344444 4577788
Q ss_pred HHHCCChHHHHHHhhcC-----chhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 039940 315 VIDAGLIVPLVNLLQDA-----EFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENI 389 (449)
Q Consensus 315 l~~~~~~~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l 389 (449)
+++.++.-.|...++.. -..+|-.++++++.++...+++...++.+.+.++...+.++.+++--+..|..++.++
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 99999888888888665 2578999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039940 390 LKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILET 443 (449)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~ 443 (449)
+..+...+..... .+.|.....-.| ..+.++..++++.+-+.+.....+
T Consensus 173 L~dd~GL~YiC~t---~eRF~av~~vL~--~mV~~l~~~ps~RLLKhiircYlR 221 (268)
T 2fv2_A 173 LLDDTGLAYICQT---YERFSHVAMILG--KMVLQLSKEPSARLLKHVVRCYLR 221 (268)
T ss_dssp HHSHHHHHHHTSS---HHHHHHHHHHHH--HHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hccchhHHHHHcc---HHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHH
Confidence 9877766544322 111222222111 334566777888876665554443
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.89 E-value=0.059 Score=44.20 Aligned_cols=144 Identities=15% Similarity=0.045 Sum_probs=105.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHH-hhCCCChHHHHHHHHHHHHHhc-CCCchhh
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVK-LLASPSDDVREQAVWALGNIVA-HSPGCRN 144 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 144 (449)
++....+.+++. .+++..|+..|+.. ...+ ..++.+.. +-..++..+++.+..++..++. ..|+.
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 445556667777 79999999999887 3111 24666666 5567889999999999999985 44431
Q ss_pred hHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh
Q 039940 145 LVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN 224 (449)
Q Consensus 145 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~ 224 (449)
.++.+.... .+++..+++.|+..+.-.+.. + ........++|.+..+..+++.-|+..+.+.|..++..++
T Consensus 140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 344555555 889999999998877654443 2 1223335678888888888899999999999999999999
Q ss_pred hHHHHHHH
Q 039940 225 DKIQAVIE 232 (449)
Q Consensus 225 ~~~~~~~~ 232 (449)
+....+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665554
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.87 E-value=0.1 Score=47.50 Aligned_cols=249 Identities=15% Similarity=0.098 Sum_probs=144.0
Q ss_pred CCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHH
Q 039940 119 SPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALA 198 (449)
Q Consensus 119 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~ 198 (449)
.++...+..|...+......-|...+. ++..++.++ .+.|..++.+|...|..+|.+ .....+.++|.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence 357889999999999998877776443 567899999 888999999999999999987 23678889999
Q ss_pred HhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcC-ChhhHHHHHhcCC
Q 039940 199 QLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTG-DDFQTQCVINHGA 277 (449)
Q Consensus 199 ~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~ 277 (449)
++|+++++.-...+-.+|..+...++. +.+..+...+..+++.+|+.++..|..-... ..+....-.+.-+
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 999998887777777777777655543 2233344444445677888888877543321 1111111222234
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHh------hcCchhHHHHHHHHHHHhh---
Q 039940 278 VPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLL------QDAEFDIKKEAAWAISNAT--- 347 (449)
Q Consensus 278 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll------~~~~~~v~~~a~~aL~~l~--- 347 (449)
+..+.+.|.+- ...--.-....|..+-. .++...+.+++ .+.+.. ...|++.....+.++....
T Consensus 179 ~~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv~-----ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~F 252 (507)
T 3u0r_A 179 LTESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLVE-----LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF 252 (507)
T ss_dssp HHHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHHH-----HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHHH-----HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 55566666443 22211222233333322 34444444432 333321 1124444444444444322
Q ss_pred -cc-CCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhh
Q 039940 348 -KA-GTQEQIKYLVREGCIKPLCDLLLCA-DPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 348 -~~-~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~ 394 (449)
.. .+.....++.+. +++.+-.+-... .++.+...+.++.-+..+..
T Consensus 253 S~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 253 SKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp BTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred ccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 21 244566666665 666555443322 12245556666666665554
No 114
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.85 E-value=0.011 Score=51.09 Aligned_cols=157 Identities=15% Similarity=0.237 Sum_probs=115.4
Q ss_pred HHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHH
Q 039940 216 LSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKK 295 (449)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~ 295 (449)
+.++.-++.+.++-+++.+++..+...++.++.++....+..|...+....-... --...+|.++..+.-..+.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCCcceEE
Confidence 3455667777888899999999999999999999999999999888654221110 01346788888886444889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC-------chhHHHHHHHHHHHhhcc-------------------
Q 039940 296 ESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA-------EFDIKKEAAWAISNATKA------------------- 349 (449)
Q Consensus 296 ~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-------~~~v~~~a~~aL~~l~~~------------------- 349 (449)
...+.|+|..++.....+..+..|.++.|...+... +..-++.||..++|....
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 999999999999888777788899999999987543 334455555555554332
Q ss_pred C--CHHHHHHHHHcCChHHHHhhccCC
Q 039940 350 G--TQEQIKYLVREGCIKPLCDLLLCA 374 (449)
Q Consensus 350 ~--~~~~~~~l~~~~~~~~L~~ll~~~ 374 (449)
| ++.+...|++.++++.|+.+++-+
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e 450 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCE 450 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 234556677777888999988754
No 115
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.85 E-value=0.00034 Score=58.84 Aligned_cols=64 Identities=13% Similarity=0.003 Sum_probs=38.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCC
Q 039940 29 AGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHG 108 (449)
Q Consensus 29 ~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 108 (449)
+++.++++.++..++..+. ...+..++++++ +.++..++..+.
T Consensus 57 ~ll~d~~~~VR~~AA~~l~-------------------~~~l~~L~~D~~-~~VR~~aA~~L~----------------- 99 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP-------------------VEALTPLIRDSD-EVVRRAVAYRLP----------------- 99 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC-------------------GGGGGGGTTCSS-HHHHHHHHTTSC-----------------
T ss_pred HHhcCCCHHHHHHHHHhCC-------------------HHHHHHHccCcC-HHHHHHHHHHCC-----------------
Confidence 4456788888888876430 123556666666 677777664310
Q ss_pred ChHHHHHhhCCCChHHHHHHHH
Q 039940 109 AVPIFVKLLASPSDDVREQAVW 130 (449)
Q Consensus 109 ~i~~L~~~l~~~~~~~~~~a~~ 130 (449)
.+.|..++++++..+|..++.
T Consensus 100 -~~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 100 -REQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp -SGGGGGTTTCSCHHHHHHHHH
T ss_pred -HHHHHHHHcCCCHHHHHHHHH
Confidence 134555666666777766555
No 116
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.78 E-value=0.00093 Score=56.17 Aligned_cols=88 Identities=18% Similarity=0.034 Sum_probs=57.8
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCC
Q 039940 72 EFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEA 151 (449)
Q Consensus 72 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 151 (449)
.++++++ +.++..++..+ ....+..+++++++.+|..++..|. +
T Consensus 57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------~----------- 100 (244)
T 1lrv_A 57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------R----------- 100 (244)
T ss_dssp GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------S-----------
T ss_pred HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------H-----------
Confidence 4567777 89998888743 1345777888999999998886421 1
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHH
Q 039940 152 LIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCW 214 (449)
Q Consensus 152 i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~ 214 (449)
..+..++ ++++..|+..++..+ . .+.+..+++++++.++..+..
T Consensus 101 -~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 101 -EQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp -GGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred -HHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence 1233333 777888888877632 1 013445566777888877766
No 117
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.64 E-value=0.076 Score=44.35 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=113.0
Q ss_pred hhhHHHHHhcCCHHHHHHHhcc----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHhhcCchh
Q 039940 266 DFQTQCVINHGAVPYLLALLIN----------NHKKSIKKESCWTVSNITAGNRKQIQAVID-AGLIVPLVNLLQDAEFD 334 (449)
Q Consensus 266 ~~~~~~~~~~~~l~~L~~ll~~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~ 334 (449)
..-.+.+ ..+++..|+.+|.. ..+.....++..||..+.. +......++. .+.+..+...+.+.++.
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~ 111 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPN 111 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence 3344444 34566666666632 1144567778888888854 5566667765 56788888889888999
Q ss_pred HHHHHHHHHHHhhccCCH----H-HHHHH------HHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 039940 335 IKKEAAWAISNATKAGTQ----E-QIKYL------VREGCIKPLCDLLL-CADPEIVTVCLKGLENILKVGEAKKNRGST 402 (449)
Q Consensus 335 v~~~a~~aL~~l~~~~~~----~-~~~~l------~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 402 (449)
++..++..|..++...++ + ..+.+ -+..-...+++.+. +.+.+.+..++..+..++...++...
T Consensus 112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~---- 187 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF---- 187 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH----
T ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH----
Confidence 999999888777765321 1 11111 12234666777776 45677888899889888887765432
Q ss_pred CCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHH
Q 039940 403 IGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVT 439 (449)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~ 439 (449)
......-|...|..+.++.+....++++......
T Consensus 188 ---R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~~ 221 (233)
T 2f31_A 188 ---RVHIRSELMRLGLHQVLQELREIENEDMKVQLCV 221 (233)
T ss_dssp ---HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHHH
T ss_pred ---HHHHHHHHHHCChHHHHHHHhccCCHHHHHHHHH
Confidence 2346677889999999999999999998777543
No 118
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.27 E-value=0.072 Score=43.70 Aligned_cols=143 Identities=8% Similarity=0.018 Sum_probs=101.5
Q ss_pred HHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH-hhcCCCHHHHHHHHHHHHHccc-CChhHHHHHH
Q 039940 154 PLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQ-LIHLDDEEVLRNVCWTLSNLSD-GTNDKIQAVI 231 (449)
Q Consensus 154 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~ 231 (449)
.+...|.++...+++..|+..+..+ . .....++.+.. +...++-.|+..+..++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------ 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------ 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence 4555555677779999999988877 2 12567888887 5556788999999999988874 3332
Q ss_pred HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Q 039940 232 EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQ 311 (449)
Q Consensus 232 ~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 311 (449)
..++.+.....+++..+|..|.......+.. +.... -...+++.+-.+..++ +..||+..+|.|..++..+|+.
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence 2567888899999999999998876543332 11000 0011455555556666 8899999999999999999987
Q ss_pred HHHHHH
Q 039940 312 IQAVID 317 (449)
Q Consensus 312 ~~~l~~ 317 (449)
...+++
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766665
No 119
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.12 E-value=0.17 Score=45.77 Aligned_cols=163 Identities=15% Similarity=0.116 Sum_probs=114.5
Q ss_pred hhhHHHHHhcCCHHHHHHHhcc----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHhhcCchh
Q 039940 266 DFQTQCVINHGAVPYLLALLIN----------NHKKSIKKESCWTVSNITAGNRKQIQAVID-AGLIVPLVNLLQDAEFD 334 (449)
Q Consensus 266 ~~~~~~~~~~~~l~~L~~ll~~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~ 334 (449)
..-.+.+. .+++..|+.+|.. ..+......+..||..+.- +......++. ...+..+...+.+..+.
T Consensus 100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~ 177 (383)
T 3eg5_B 100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPN 177 (383)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHH
T ss_pred cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchH
Confidence 44445555 5677777777742 1144677788899988854 4566666664 56789999999999999
Q ss_pred HHHHHHHHHHHhhccCCHHH-HHH----H------HHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 039940 335 IKKEAAWAISNATKAGTQEQ-IKY----L------VREGCIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEAKKNRGST 402 (449)
Q Consensus 335 v~~~a~~aL~~l~~~~~~~~-~~~----l------~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 402 (449)
++..++..|..++....++. ... + .+..-+..+++.+++ .+.+.+..++..+..++...++...
T Consensus 178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~---- 253 (383)
T 3eg5_B 178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF---- 253 (383)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH----
T ss_pred HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH----
Confidence 99999999988777543111 111 1 123447778888886 5778888899889888887655432
Q ss_pred CCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHH
Q 039940 403 IGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKA 437 (449)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a 437 (449)
......-|...|..+.+..+....++++....
T Consensus 254 ---R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi 285 (383)
T 3eg5_B 254 ---RVHIRSELMRLGLHQVLQELREIENEDMKVQL 285 (383)
T ss_dssp ---HHHHHHHHHHTTHHHHHHHHTTSCCHHHHHHH
T ss_pred ---HHHHHHHHHHCChHHHHHHHhcCCChhHHHHH
Confidence 23456778899999999999888888776553
No 120
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.11 E-value=0.22 Score=41.48 Aligned_cols=154 Identities=15% Similarity=0.142 Sum_probs=92.5
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHhcC
Q 039940 27 MVAGVWSDD-NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR----E------DYPRLQFEAAWVLTNIAS 95 (449)
Q Consensus 27 l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----~------~~~~~~~~a~~~L~~l~~ 95 (449)
.++.|++.. +.....-+..|...+..+.....+.+ ..+++..|++.|.. + .+.+.+..++.||..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 344555432 22222334444444343323445556 46677777777642 1 125778899999999997
Q ss_pred CChhhhHHHHh-CCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC-ch-hhhHh----------hcCCHHHHHHHHccc
Q 039940 96 GTSVNTKVLID-HGAVPIFVKLLASPSDDVREQAVWALGNIVAHSP-GC-RNLVL----------HEEALIPLLAQLNEH 162 (449)
Q Consensus 96 ~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~ 162 (449)
+....+.+.. .+.+..+...+.+++..++..++..|..+|..+. .. ...+. +..-+.++++.+...
T Consensus 84 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 84 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp -SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred -ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 5666666665 4688999999999999999999999999986553 22 22222 112344555555334
Q ss_pred ccHHHHHHHHHHHHHhhcCC
Q 039940 163 ARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 163 ~~~~~~~~a~~~l~~l~~~~ 182 (449)
.+.+.+..++..+..+....
T Consensus 163 ~~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPA 182 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHCCC
Confidence 44555555555555555554
No 121
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.79 E-value=1.1 Score=40.93 Aligned_cols=257 Identities=15% Similarity=0.067 Sum_probs=151.4
Q ss_pred hhhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChh
Q 039940 20 KLEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSV 99 (449)
Q Consensus 20 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 99 (449)
.......++... +++......|+..+.++...- .+..+ ..+..+++++.+.+ ..+|.+|++.|-.+|.+ +
T Consensus 27 ~~~~y~~Il~~~-kg~~k~K~LaaQ~I~kffk~F-P~l~~-----~Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~--~ 96 (507)
T 3u0r_A 27 HKDAYQVILDGV-KGGTKEKRLAAQFIPKFFKHF-PELAD-----SAINAQLDLCEDED-VSIRRQAIKELPQFATG--E 96 (507)
T ss_dssp GHHHHHHHHHGG-GSCHHHHHHHHHHHHHHGGGC-GGGHH-----HHHHHHHHHHTCSS-HHHHHHHHHHGGGGCCT--T
T ss_pred cHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhC-hhhHH-----HHHHHHHHHHhccc-HHHHHHHHHhhHHHhhh--h
Confidence 345556666654 456888999999999997653 33333 34788999999999 89999999999999985 5
Q ss_pred hhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhh
Q 039940 100 NTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 100 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~ 179 (449)
+...+ ..+|.++|+.+++.-...+-++|..+...+|. +.+..++..+. .+++.+++.++..|..=.
T Consensus 97 ~i~ki-----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~-~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 97 NLPRV-----ADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQIL-QGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp CHHHH-----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHH-HSCHHHHHHHHHHHHHHG
T ss_pred hhhhH-----HHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHc-ccchHHHHHHHHHHHHHH
Confidence 55444 68999999998877777777777777554432 35556777773 357888888888776544
Q ss_pred cCC-C-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh-hHHHHHHHhCcHHHHHHhhC------CCCCcc
Q 039940 180 KGK-P-QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN-DKIQAVIEAGVCGPLVELLG------HPSPSV 250 (449)
Q Consensus 180 ~~~-~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~ll~------~~~~~v 250 (449)
..- + ........-++..+.+.|..-..+-..-.+..|..+--... ...+ .+++.+..... ..+++.
T Consensus 163 ~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~q-----eLv~ii~eQa~L~~~f~~sD~e~ 237 (507)
T 3u0r_A 163 KTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQ-----QLVELVAEQADLEQTFNPSDPDC 237 (507)
T ss_dssp GGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHH-----HHHHHHHHHHTTTSCCCSSCHHH
T ss_pred hhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHH-----HHHHHHHHHHhccCCCCCcCHHH
Confidence 432 1 22333445566667777755444444444555544432221 1111 22333333322 123444
Q ss_pred hhhHHHHHHHh----hcC--ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 039940 251 LIPALRTVGNI----VTG--DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITA 306 (449)
Q Consensus 251 ~~~a~~~l~~l----~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 306 (449)
....+.|+..- +.+ +...... +-..++|.+-.+-......+.+-....+++.++.
T Consensus 238 vdRlI~C~~~ALP~FS~~v~StkFv~y-~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~ 298 (507)
T 3u0r_A 238 VDRLLQCTRQAVPLFSKNVHSTRFVTY-FCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSS 298 (507)
T ss_dssp HHHHHHHHHHHGGGCBTTBCCHHHHHH-HHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHH-HHHhhccchhhccccccchHHHHHHHHHHHHHcc
Confidence 44444444332 222 1122222 2233555444333322122367777888888875
No 122
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.71 E-value=0.58 Score=42.26 Aligned_cols=162 Identities=15% Similarity=0.112 Sum_probs=110.8
Q ss_pred hhHHHHHhcCCHHHHHHHhcc----C------CchhHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHhhcCchhH
Q 039940 267 FQTQCVINHGAVPYLLALLIN----N------HKKSIKKESCWTVSNITAGNRKQIQAVID-AGLIVPLVNLLQDAEFDI 335 (449)
Q Consensus 267 ~~~~~~~~~~~l~~L~~ll~~----~------~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~v 335 (449)
...+.+. .+++..|+.+|.. + .+......++.||..+.- +......++. .+.+..+...+...++.+
T Consensus 39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~ 116 (386)
T 2bnx_A 39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNM 116 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 3344443 4566666666531 1 145667788889888854 4566666665 567888988898889999
Q ss_pred HHHHHHHHHHhhccCCHHH-HH----H------HHHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 039940 336 KKEAAWAISNATKAGTQEQ-IK----Y------LVREGCIKPLCDLLL-CADPEIVTVCLKGLENILKVGEAKKNRGSTI 403 (449)
Q Consensus 336 ~~~a~~aL~~l~~~~~~~~-~~----~------l~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 403 (449)
+..++..|..++....++. .. . ..+..-+..+++.+. +.+.+....++..+..++...++...
T Consensus 117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~----- 191 (386)
T 2bnx_A 117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF----- 191 (386)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----
T ss_pred HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-----
Confidence 9999888877766533111 11 1 112234666777776 45677888899999888887765442
Q ss_pred CcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHH
Q 039940 404 GDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKA 437 (449)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a 437 (449)
...+..-|..+|..+.+..+....++++....
T Consensus 192 --R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi 223 (386)
T 2bnx_A 192 --RVHIRSELMRLGLHQVLQELREIENEDMKVQL 223 (386)
T ss_dssp --HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred --HHHHHHHHHHCChHHHHHHHhccCChhHHHHH
Confidence 33467888899999999999998998886663
No 123
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.64 E-value=0.66 Score=41.85 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=101.4
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHh
Q 039940 25 PAMVAGVWSDD-NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR----------EDYPRLQFEAAWVLTNI 93 (449)
Q Consensus 25 ~~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~~~~~~a~~~L~~l 93 (449)
...++.|+++- .......+..|+..+........+.+. .+++..|+..|.. ..+.+.+..++.||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 34566666543 222233455565554443234456666 5678888888741 11257888999999999
Q ss_pred cCCChhhhHHHHhC-CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC-ch-hhhHh----------hcCCHHHHHHHHc
Q 039940 94 ASGTSVNTKVLIDH-GAVPIFVKLLASPSDDVREQAVWALGNIVAHSP-GC-RNLVL----------HEEALIPLLAQLN 160 (449)
Q Consensus 94 ~~~~~~~~~~~~~~-~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~ 160 (449)
.. +......++.. ..+..+...+.+.++.++..++.+|.-+|.... .. ...+. +..-+..++..+.
T Consensus 148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 97 55566666554 789999999999999999999999999997653 22 22222 2233566677664
Q ss_pred ccccHHHHHHHHHHHHHhhcCCC
Q 039940 161 EHARLSMLRIGTWTLSNLCKGKP 183 (449)
Q Consensus 161 ~~~~~~~~~~a~~~l~~l~~~~~ 183 (449)
...+.+.+..++..+..+....+
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred ccCcHHHHHHHHHHHHHHHcCCC
Confidence 44566666666666666666654
No 124
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.64 E-value=0.47 Score=41.18 Aligned_cols=173 Identities=10% Similarity=0.062 Sum_probs=106.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCC----hHHHHHhhCC-CChHHHHHHHHHHHHHhcCCCc
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGA----VPIFVKLLAS-PSDDVREQAVWALGNIVAHSPG 141 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~ 141 (449)
+..+.+++ +-. .+.+.-++..++-... .+.....+.+.+. +..+...+.+ ..+..+-.+++++.|+.... .
T Consensus 105 l~~l~kil-~WP-~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~ 180 (304)
T 3ebb_A 105 LQILWKAI-NCP-EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ-A 180 (304)
T ss_dssp HHHHHHHH-TSC-TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH-H
T ss_pred HHHHHHHH-cCC-HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc-h
Confidence 45666666 333 4667788888887776 5665555554322 2233344433 34667888999999996554 4
Q ss_pred hhhhHhhcCCHHHHHHHHc---ccccHHHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcC-CCHHHHHHHHHHH
Q 039940 142 CRNLVLHEEALIPLLAQLN---EHARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHL-DDEEVLRNVCWTL 216 (449)
Q Consensus 142 ~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~-~~~~~~~~~~~~l 216 (449)
.+..+.. ....++..+. .+.+..++..++..+.|++... ..........++..+..++.. .|.+....++.++
T Consensus 181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5555543 2344444442 3457788888898999888653 112233334456666666653 5889999999999
Q ss_pred HHcccCChhHHHHHHHhCcHHHHHHhhCC
Q 039940 217 SNLSDGTNDKIQAVIEAGVCGPLVELLGH 245 (449)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 245 (449)
+++...+.+..+.....|+-..+-...+.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99998766544433333554444444444
No 125
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.40 E-value=0.64 Score=49.14 Aligned_cols=283 Identities=11% Similarity=0.074 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhh--CCCChHHHHHHHHHHHHHhcCC-----CchhhhHhhcCCH
Q 039940 80 PRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL--ASPSDDVREQAVWALGNIVAHS-----PGCRNLVLHEEAL 152 (449)
Q Consensus 80 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l--~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i 152 (449)
.+.+.+|-..|.++-. ++ .+...+...| .+.+..+|..|+..|.+..... ++.+..+ +
T Consensus 27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r---- 91 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-K---- 91 (1204)
T ss_dssp HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-H----
T ss_pred hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-H----
Confidence 6778888888877644 22 2334444433 3467899999999999987432 2222222 2
Q ss_pred HHHHHHHccc------ccHHHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccC---
Q 039940 153 IPLLAQLNEH------ARLSMLRIGTWTLSNLCKGK-PQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDG--- 222 (449)
Q Consensus 153 ~~l~~~l~~~------~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~--- 222 (449)
..++..+... ....++..++.++..++... |... ..+++.++.++.+ ++.....++.+|..++..
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 2344444322 35778888899999888775 4222 4677788887765 455566677777776532
Q ss_pred ----ChhHHHH---HHHh---CcHHHHHHhhCC-------------------CCCcchhhHHHHHHHhhcCChhhHHHHH
Q 039940 223 ----TNDKIQA---VIEA---GVCGPLVELLGH-------------------PSPSVLIPALRTVGNIVTGDDFQTQCVI 273 (449)
Q Consensus 223 ----~~~~~~~---~~~~---~~~~~L~~ll~~-------------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 273 (449)
...+... .+.. .+++.+..++.. .+..+...++.++.+...--+. ..+.
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~ 244 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHIT 244 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHH
Confidence 1111111 1111 223333333322 1223555666666655432221 2233
Q ss_pred hcC--CHHHHHHHhccCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHC---CChHHHHHHhh--------cCchhHHHH
Q 039940 274 NHG--AVPYLLALLINNHKKSIKKESCWTVSNITAGN--RKQIQAVIDA---GLIVPLVNLLQ--------DAEFDIKKE 338 (449)
Q Consensus 274 ~~~--~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~--~~~~~~l~~~---~~~~~L~~ll~--------~~~~~v~~~ 338 (449)
+.. .++.+..++. +++++..|+.+|..++... ++....++.. ..+..++.... +.+.++.+.
T Consensus 245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~ 321 (1204)
T 3a6p_A 245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR 321 (1204)
T ss_dssp TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence 332 6777776655 4678999999999999732 4433333321 11224444432 224567777
Q ss_pred HHHHHHHhhccCCHHHHHHHHH-----------cCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940 339 AAWAISNATKAGTQEQIKYLVR-----------EGCIKPLCDLLLCADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 339 a~~aL~~l~~~~~~~~~~~l~~-----------~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 392 (449)
.+..+..+.. . ...++. .++++.+..++.+++..+...++..-..+++.
T Consensus 322 l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 322 LCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 7777776652 1 122222 12466677777777766666666555545443
No 126
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.32 E-value=3.5 Score=43.58 Aligned_cols=300 Identities=11% Similarity=0.086 Sum_probs=168.6
Q ss_pred hcHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHhcCC--
Q 039940 22 EILPAMVAGVWSD--DNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLL-REDYPRLQFEAAWVLTNIASG-- 96 (449)
Q Consensus 22 ~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~-- 96 (449)
..+..+++.+.++ +...+..|-..|.++-..+ + ....+...|. ...+..++..|+..|.+....
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p--~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W 79 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC--P---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRW 79 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC--T---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc--h---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 3355555554454 6778888888887774321 1 2344444333 333378999999999987642
Q ss_pred ---ChhhhHHHHhCCChHHHHHhhCC---CChHHHHHHHHHHHHHhcCC-C-chhhhHhhcCCHHHHHHHHcccccHHHH
Q 039940 97 ---TSVNTKVLIDHGAVPIFVKLLAS---PSDDVREQAVWALGNIVAHS-P-GCRNLVLHEEALIPLLAQLNEHARLSML 168 (449)
Q Consensus 97 ---~~~~~~~~~~~~~i~~L~~~l~~---~~~~~~~~a~~~L~~l~~~~-~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~ 168 (449)
+++.+..+. ..+++.+...... ....++.....++..++... | .. .+.++.++..+. . ++...
T Consensus 80 ~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W------p~ll~~L~~~~~-~-~~~~~ 150 (1204)
T 3a6p_A 80 NGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW------PDMLIELDTLSK-Q-GETQT 150 (1204)
T ss_dssp GGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC------TTHHHHHHHHHH-T-CHHHH
T ss_pred ccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHhc-C-CHHHH
Confidence 233333333 2344444433211 45889999999999887542 2 11 235667777773 2 45567
Q ss_pred HHHHHHHHHhhcCC---CCCChhh-----------hhchHHHHHHhhcC-------------------CCHHHHHHHHHH
Q 039940 169 RIGTWTLSNLCKGK---PQPPFDQ-----------VRPVLPALAQLIHL-------------------DDEEVLRNVCWT 215 (449)
Q Consensus 169 ~~a~~~l~~l~~~~---~~~~~~~-----------~~~~l~~l~~ll~~-------------------~~~~~~~~~~~~ 215 (449)
..++.+|..++.+. ....... ...+++.+..++.. .+..+...++.+
T Consensus 151 e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~ 230 (1204)
T 3a6p_A 151 ELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNT 230 (1204)
T ss_dssp HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHH
Confidence 77888888886542 1111110 01344444444432 134567778888
Q ss_pred HHHcccCChhHHHHHHHhC--cHHHHHHhhCCCCCcchhhHHHHHHHhhcCC--hhhHHHHHh---cCCHHHHHHHhc--
Q 039940 216 LSNLSDGTNDKIQAVIEAG--VCGPLVELLGHPSPSVLIPALRTVGNIVTGD--DFQTQCVIN---HGAVPYLLALLI-- 286 (449)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~--~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~---~~~l~~L~~ll~-- 286 (449)
+.+....-+. ..+.+.. +++.+..++. +++++..|+.||..++... +.....++. ...+..++..+.
T Consensus 231 l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~ 306 (1204)
T 3a6p_A 231 LAGYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTA 306 (1204)
T ss_dssp HHTTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTC
T ss_pred HHHHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcC
Confidence 8776655442 2233433 6777776655 5779999999999998754 222111221 111334444432
Q ss_pred -----cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------CCChHHHHHHhhcCchhHHHHHHHHHHHhhcc
Q 039940 287 -----NNHKKSIKKESCWTVSNITAGNRKQIQAVID-----------AGLIVPLVNLLQDAEFDIKKEAAWAISNATKA 349 (449)
Q Consensus 287 -----~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-----------~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 349 (449)
+..+.++.+..+..+..+.. . ...++. .++++.++.+...++..+...++.....+...
T Consensus 307 ~~~~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 307 DGGGLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 11145677777777777752 1 112221 13577777777777777777777665555543
No 127
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.27 E-value=0.16 Score=44.09 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=72.5
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhC--CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHh
Q 039940 70 FVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDH--GAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVL 147 (449)
Q Consensus 70 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 147 (449)
+...+.+...+..+..++++++|+.. ++..+..+... .+++.+...+.+++..++..+..++.|++...-..+..-.
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 34444444346778999999999998 56677766643 3455555555667899999999999999842110000000
Q ss_pred hcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCC
Q 039940 148 HEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGK 182 (449)
Q Consensus 148 ~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 182 (449)
....+..+...+....|.+....++-++.++...+
T Consensus 231 ~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~ 265 (304)
T 3ebb_A 231 KAQCLSLISTILEVVQDLEATFRLLVALGTLISDD 265 (304)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCC
Confidence 11133344455545568888888999999988653
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.11 E-value=1.7 Score=45.22 Aligned_cols=172 Identities=16% Similarity=0.166 Sum_probs=108.7
Q ss_pred HHHHHHHHcc---cccHHHHHHHHHHHHHh----hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccCCh
Q 039940 152 LIPLLAQLNE---HARLSMLRIGTWTLSNL----CKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTN 224 (449)
Q Consensus 152 i~~l~~~l~~---~~~~~~~~~a~~~l~~l----~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~ 224 (449)
+..+..++.. ..++.++..++.+++.+ |...+.........+...+...+...+.+-+...+.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 3344555522 13455666666665554 44433334344566666777777777888888999999998742
Q ss_pred hHHHHHHHhCcHHHHHHhhCC-----C--CCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhc-cCCchhHHHH
Q 039940 225 DKIQAVIEAGVCGPLVELLGH-----P--SPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLI-NNHKKSIKKE 296 (449)
Q Consensus 225 ~~~~~~~~~~~~~~L~~ll~~-----~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~ 296 (449)
..++.+..++.. . ...++..|+++|..++...+... -+.++.+.. ...++++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHH
Confidence 245666666642 1 23477889999999987654433 334666663 2338899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhc-CchhHHHHHHHHHHHhhccCCH
Q 039940 297 SCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQD-AEFDIKKEAAWAISNATKAGTQ 352 (449)
Q Consensus 297 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~ 352 (449)
|+..|... ..+.. .+..+...+.. .+..|.......|.+++....+
T Consensus 534 A~~~Lm~t-~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 534 SCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHH-CcCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 99888644 22333 23344555554 4788888888888888887655
No 129
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.57 E-value=2.2 Score=38.50 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=96.5
Q ss_pred HHHHhcCCCHHH-HHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHhcC
Q 039940 27 MVAGVWSDDNSM-QLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLR----E------DYPRLQFEAAWVLTNIAS 95 (449)
Q Consensus 27 l~~~l~s~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----~------~~~~~~~~a~~~L~~l~~ 95 (449)
.++.|++....- ....+..|.-.+........+.+. .+++..|+..|.. . .+.+.+..++.||..+..
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 445555433221 122344444444433234455564 5667777777642 1 125778899999999998
Q ss_pred CChhhhHHHHhC-CChHHHHHhhCCCChHHHHHHHHHHHHHhcCCC-ch-hhhHh----------hcCCHHHHHHHHccc
Q 039940 96 GTSVNTKVLIDH-GAVPIFVKLLASPSDDVREQAVWALGNIVAHSP-GC-RNLVL----------HEEALIPLLAQLNEH 162 (449)
Q Consensus 96 ~~~~~~~~~~~~-~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~ 162 (449)
+......+... +++..+...+.++++.++..++..|..+|..+. .. ...+. +..-+..++..+..+
T Consensus 88 -~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 88 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp -SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred -CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence 55556665554 788999999999999999999999999986553 22 22222 222455667767545
Q ss_pred ccHHHHHHHHHHHHHhhcCCC
Q 039940 163 ARLSMLRIGTWTLSNLCKGKP 183 (449)
Q Consensus 163 ~~~~~~~~a~~~l~~l~~~~~ 183 (449)
.+.+.+..++..+..+....+
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~ 187 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAE 187 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCS
T ss_pred ChHHHHHHHHHHHHHHHCCCC
Confidence 566666666666666666654
No 130
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.40 E-value=2.4 Score=44.03 Aligned_cols=167 Identities=14% Similarity=0.157 Sum_probs=110.9
Q ss_pred ChHHHHHhhCC----CChHHHHHHHHHHHHHhc----CCCchhhhHhhcCCHHHHHHHHc---ccccHHHHHHHHHHHHH
Q 039940 109 AVPIFVKLLAS----PSDDVREQAVWALGNIVA----HSPGCRNLVLHEEALIPLLAQLN---EHARLSMLRIGTWTLSN 177 (449)
Q Consensus 109 ~i~~L~~~l~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~l~~ 177 (449)
.+..+..++.+ .++.+++.++-+++.+.. ..+.+.. ..++.+.+.+. ...+.+-+..++.+|.|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 35566666665 457788888887777753 3222211 22444444442 34466777888999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh--CCCCC
Q 039940 178 LCKGKPQPPFDQVRPVLPALAQLIHL-------DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL--GHPSP 248 (449)
Q Consensus 178 l~~~~~~~~~~~~~~~l~~l~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll--~~~~~ 248 (449)
+-.. ..++.+.+++.. ....++..|+++|..+....+...+ +.+.++. ...++
T Consensus 467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS 528 (1056)
T ss_dssp HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence 8764 567778887742 1357888999999999876654433 5566666 34677
Q ss_pred cchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 039940 249 SVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGN 308 (449)
Q Consensus 249 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~ 308 (449)
++|..|+..|.... +.. ..+..+...+..+.+.+|.......|.+++...
T Consensus 529 EvRiaA~~~Lm~t~---P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 529 ELRIRSCIVFFESK---PSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHHTC---CCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHC---cCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 89988888774322 221 145667777877658899999999999998743
No 131
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=94.23 E-value=1.3 Score=40.46 Aligned_cols=237 Identities=14% Similarity=0.080 Sum_probs=125.3
Q ss_pred hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940 99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l 178 (449)
......++...+..|+.++.++|+.-|+..-.+|..+-+.-...|..+.. .+-..+...+.......-....+.+++.+
T Consensus 153 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSI 231 (449)
T 2npp_B 153 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSI 231 (449)
T ss_dssp TTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHH
T ss_pred hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence 33455556678889999999999999999999998886544444444432 22223444443333233344566777777
Q ss_pred hcCCCCC-ChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhH-
Q 039940 179 CKGKPQP-PFDQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPA- 254 (449)
Q Consensus 179 ~~~~~~~-~~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a- 254 (449)
..+...+ ......-....|+.+..... ...-.....|+......++..... ++.. +++. +......+.
T Consensus 232 inGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~---LLk~WP~tns~Kevl 303 (449)
T 2npp_B 232 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMA---LLKYWPKTHSPKEVM 303 (449)
T ss_dssp HSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHH---HHHTCCSSCHHHHHH
T ss_pred HhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHH---HHHhCCCCCchHHHH
Confidence 7775322 22222333455556555443 222334445555444444433331 1222 2332 222222222
Q ss_pred -HHHHHHhhcC-ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---CCChHHHHHHhh
Q 039940 255 -LRTVGNIVTG-DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID---AGLIVPLVNLLQ 329 (449)
Q Consensus 255 -~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~~~~L~~ll~ 329 (449)
+.-+..+... .+...+.+. ..++..+...+.+. +..|.+.|+.... ++... .++. ..++|.+...+.
T Consensus 304 FL~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~-----N~~i~-~li~~n~~~IlPii~p~L~ 375 (449)
T 2npp_B 304 FLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWN-----NEYIM-SLISDNAAKILPIMFPSLY 375 (449)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGG-----CHHHH-HHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHC-----CHHHH-HHHHhchhhhHHhhHHHHH
Confidence 3334444432 233222222 23677788888888 8888888764432 22222 2222 124566666552
Q ss_pred ----cC-chhHHHHHHHHHHHhhccCCHH
Q 039940 330 ----DA-EFDIKKEAAWAISNATKAGTQE 353 (449)
Q Consensus 330 ----~~-~~~v~~~a~~aL~~l~~~~~~~ 353 (449)
.+ +..++..+..++.-+... ++.
T Consensus 376 ~~s~~HWn~~V~~la~~vlk~l~e~-d~~ 403 (449)
T 2npp_B 376 RNSKTHWNKTIHGLIYNALKLFMEM-NQK 403 (449)
T ss_dssp SCTTCCSSTTHHHHHHHHHHHHHTT-CHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHH-CHH
Confidence 22 778888888888877665 444
No 132
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=94.21 E-value=1.4 Score=39.50 Aligned_cols=234 Identities=13% Similarity=0.076 Sum_probs=116.9
Q ss_pred hhhHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHh
Q 039940 99 VNTKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNL 178 (449)
Q Consensus 99 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l 178 (449)
......++...+..|+.++.++|++-|...-.+|.++-+.-...|..+.. ..-..+...+.......=....+.+++.+
T Consensus 120 ~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsI 198 (403)
T 3fga_B 120 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSI 198 (403)
T ss_dssp HHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred hhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 33444555567888999999999999999999888875443333333321 11122333332222222223445555555
Q ss_pred hcCCCCCC-hhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCC-CCCcchhhH-
Q 039940 179 CKGKPQPP-FDQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGH-PSPSVLIPA- 254 (449)
Q Consensus 179 ~~~~~~~~-~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a- 254 (449)
..+...+- .....-....|+.+-.... .........|+......++.....+ +.. +++. +........
T Consensus 199 inGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~---LLk~WP~tns~Kevl 270 (403)
T 3fga_B 199 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMA---LLKYWPKTHSPKEVM 270 (403)
T ss_dssp HHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHH---HHHTCCSSCHHHHHH
T ss_pred HcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHH---HHHhCCCCCcHHHHH
Confidence 55542222 2222333445555555443 2222344445544444444333321 222 2322 212222222
Q ss_pred -HHHHHHhhcC-ChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHC---CChHHHHHHh-
Q 039940 255 -LRTVGNIVTG-DDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDA---GLIVPLVNLL- 328 (449)
Q Consensus 255 -~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~---~~~~~L~~ll- 328 (449)
+.-+..+... .+...+.+. ..++..+...+.+. +..|.+.|..... ++. +..++.. .++|.+...+
T Consensus 271 FL~Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wn-----Ne~-i~~li~~n~~~IlPii~p~L~ 342 (403)
T 3fga_B 271 FLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWN-----NEY-IMSLISDNAAKILPIMFPSLY 342 (403)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGG-----CHH-HHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhc-----cHH-HHHHHHHhHHHHHHHHHHHHH
Confidence 2333444432 222222222 23677788888888 8888887765432 222 2222221 2444444443
Q ss_pred ---hcC-chhHHHHHHHHHHHhhcc
Q 039940 329 ---QDA-EFDIKKEAAWAISNATKA 349 (449)
Q Consensus 329 ---~~~-~~~v~~~a~~aL~~l~~~ 349 (449)
..+ +..++..+..++.-+...
T Consensus 343 ~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 343 RNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp HTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHh
Confidence 334 788998888888877664
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.09 E-value=0.36 Score=36.37 Aligned_cols=76 Identities=4% Similarity=-0.030 Sum_probs=60.0
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
.+..+..-+.+.++.++..|+..|-.++.+++..+...+....++..|..++...++.|+.+++..+.........
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3456667778889999999999999999988877776666666777777777778899999999999877765443
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.61 E-value=0.49 Score=36.01 Aligned_cols=76 Identities=9% Similarity=-0.080 Sum_probs=62.6
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhh
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~ 393 (449)
.+..|..-+.+.++.++..|+..|-.++.++...+...+....++..|..++.. .++.|+.+++..+.......
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345677778888999999999999999999988888877777788888888863 47789999999998887665
Q ss_pred hh
Q 039940 394 EA 395 (449)
Q Consensus 394 ~~ 395 (449)
..
T Consensus 129 ~~ 130 (149)
T 3g2s_A 129 PE 130 (149)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 135
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.64 Score=39.67 Aligned_cols=135 Identities=11% Similarity=0.086 Sum_probs=87.7
Q ss_pred chhhHHHHHHHhhcCChhhHHHHH-hcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--CCChHHHHH
Q 039940 250 VLIPALRTVGNIVTGDDFQTQCVI-NHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID--AGLIVPLVN 326 (449)
Q Consensus 250 v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--~~~~~~L~~ 326 (449)
....|+-.|.-++..-....+.+- +...+..|+ +.... .+.++..|+.+++...+.+|..+..+.+ ..++..++.
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 345566666666654333333222 333444444 22334 6789999999999999999999988876 345555555
Q ss_pred Hhhc-------CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHHh
Q 039940 327 LLQD-------AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCA--DPEIVTVCLKGLENILKV 392 (449)
Q Consensus 327 ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~~~~~l~~l~~~ 392 (449)
-|.. ....+++.-+.+|.-|+... .. | ....+..|..++... ++.++.+++.++..++..
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~----F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~~ 190 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTS-ED----L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILKA 190 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TT----C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hh----h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHccc
Confidence 4433 23356666777777777752 11 1 244667777777766 899999999999999963
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=92.70 E-value=0.46 Score=36.16 Aligned_cols=75 Identities=9% Similarity=-0.105 Sum_probs=62.1
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhh
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~ 393 (449)
.+..+..-+.+.++.++..|+..|-.++.+++..+...+....++..|..++.. .++.|+.+++..+.......
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 345667777888999999999999999999888888887777889999988874 37789999999988877654
Q ss_pred h
Q 039940 394 E 394 (449)
Q Consensus 394 ~ 394 (449)
.
T Consensus 119 ~ 119 (148)
T 1mhq_A 119 P 119 (148)
T ss_dssp T
T ss_pred C
Confidence 3
No 137
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=92.55 E-value=0.32 Score=36.35 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=55.5
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhc-chHHHHHHHhcCCC--------HHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGA-EGFKKIEDLKSHGN--------NGI 433 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~--------~~i 433 (449)
+++.|..-|+++++.+..+|+.+|..++..+.. .|..-+++. ..++.+.+....++ ..|
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~------------~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V 117 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS------------EFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV 117 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH------------HHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH------------HHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence 577888889999999999999999999976643 244444433 44555555544433 569
Q ss_pred HHHHHHHHHHhcCCCC
Q 039940 434 REKAVTILETYWLKGR 449 (449)
Q Consensus 434 ~~~a~~~i~~~~~~~~ 449 (449)
+.+|..+++-.|++++
T Consensus 118 R~~AkEl~~ll~d~~~ 133 (140)
T 1vdy_A 118 RETAHETISAIFSEEN 133 (140)
T ss_dssp HHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHhCcCC
Confidence 9999999999999874
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.11 E-value=0.41 Score=37.16 Aligned_cols=76 Identities=4% Similarity=-0.058 Sum_probs=60.4
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhh
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
.+..|..-+.+.++.++..|+..|-.++.++...+...+....+++.|..++.. .++.|+.+++..+.........
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344666777888999999999999999999888777777666777778787765 5789999999988877765443
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=91.81 E-value=0.85 Score=35.66 Aligned_cols=76 Identities=9% Similarity=-0.050 Sum_probs=61.4
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhh
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~ 393 (449)
.+..|..-+.+.++.++..|+..|-.++.++...+...+....+++.|+.++.. .+..|+.+++..+.......
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 345677778888999999999999999998777777777777788888888863 36789999999998887665
Q ss_pred hh
Q 039940 394 EA 395 (449)
Q Consensus 394 ~~ 395 (449)
..
T Consensus 131 ~~ 132 (171)
T 1juq_A 131 PE 132 (171)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 140
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=90.00 E-value=1.2 Score=34.47 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=54.9
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC-CCHHHHHHHHHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH-GNNGIREKAVTIL 441 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~~~a~~~i 441 (449)
++..|..-+.+.++.++..|+.+|..+++.+.. .|...+.....++.+..+... .++.|++++..++
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~------------~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK------------IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH------------HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH------------HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 466677778889999999999999999998754 356666666677777777554 6789999999998
Q ss_pred HHh
Q 039940 442 ETY 444 (449)
Q Consensus 442 ~~~ 444 (449)
+..
T Consensus 121 ~~W 123 (163)
T 1x5b_A 121 VEW 123 (163)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 141
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=89.88 E-value=2.5 Score=37.83 Aligned_cols=140 Identities=18% Similarity=0.163 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhc
Q 039940 293 IKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLL 371 (449)
Q Consensus 293 v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll 371 (449)
.+.....-+..++. .++. +. .++++.++.+..+.+.++|+.++..|...+.. ..+.... +++.|..++
T Consensus 41 ~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~-----~l~~L~~LL 109 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLK-----LIANLNMLL 109 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHH
Confidence 45555555555443 2332 12 36888999988888999999999999888764 3333222 577888888
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCC-cccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940 372 LCADPEIVTVCLKGLENILKVGEAKKNRGSTIG-DVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW 445 (449)
Q Consensus 372 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~ 445 (449)
.++|+.+.+.++.+..+++...-..-....... ..+..++.+.. ..+.+-.+.++.+.-++-.+.|.+++..
T Consensus 110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 889999999988888887744322211100000 00122333322 3456666778889999999999999854
No 142
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=89.49 E-value=6.1 Score=33.80 Aligned_cols=149 Identities=12% Similarity=0.103 Sum_probs=95.3
Q ss_pred HHHHHHhhcCC------CHHHHHHHHHHHHHcccCChhHHHHHH-HhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh
Q 039940 194 LPALAQLIHLD------DEEVLRNVCWTLSNLSDGTNDKIQAVI-EAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD 266 (449)
Q Consensus 194 l~~l~~ll~~~------~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 266 (449)
+..+..+++++ +.+-...++..|..++..-.-..+.+- +...+..|+ +.....+.+++.|.++|+...++++
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 34444555544 455677888888888855443333222 334444444 3334556789999999999999999
Q ss_pred hhHHHHHh--cCCHHHHHHHhcc----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC--chhHH
Q 039940 267 FQTQCVIN--HGAVPYLLALLIN----N--HKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA--EFDIK 336 (449)
Q Consensus 267 ~~~~~~~~--~~~l~~L~~ll~~----~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~ 336 (449)
.....+.+ ..++..+..-|.. + ....+.+.-+.+|..|+..+.. + ....+..|.+++... ++.++
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHH
Confidence 98887764 3445554444432 1 1345777777888888765421 2 135668888888777 88999
Q ss_pred HHHHHHHHHhhc
Q 039940 337 KEAAWAISNATK 348 (449)
Q Consensus 337 ~~a~~aL~~l~~ 348 (449)
..++..+..+..
T Consensus 178 ~Kvl~li~d~f~ 189 (315)
T 3qml_C 178 IKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 999888887774
No 143
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=89.08 E-value=1.2 Score=33.46 Aligned_cols=70 Identities=13% Similarity=0.220 Sum_probs=54.5
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILE 442 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~ 442 (449)
++..|..-+.+.++.++..|+.+|..+++.+.. .|...+.....++.+..+....++.|++++..++.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~------------~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK------------IFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------------HHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH------------HHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 566677778888999999999999999988755 25555555566777777766678999999999987
Q ss_pred Hh
Q 039940 443 TY 444 (449)
Q Consensus 443 ~~ 444 (449)
..
T Consensus 111 ~W 112 (140)
T 3ldz_A 111 EW 112 (140)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 144
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=88.60 E-value=2 Score=33.57 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=56.2
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhc------CCCHHHHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKS------HGNNGIREK 436 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~i~~~ 436 (449)
++..|..-+.+.++.++..++.+|..+++.+.. .|...+.+...++.|..+.. ..+.+|+++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~------------~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 118 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR------------RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK 118 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 466777778889999999999999999998765 36666777777888888864 246899999
Q ss_pred HHHHHHHh
Q 039940 437 AVTILETY 444 (449)
Q Consensus 437 a~~~i~~~ 444 (449)
+..+|+..
T Consensus 119 il~li~~W 126 (171)
T 1juq_A 119 VIELLYSW 126 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998863
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=88.29 E-value=1.9 Score=32.72 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=56.7
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhc------CCCHHHHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKS------HGNNGIREK 436 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~i~~~ 436 (449)
++..|..-+.+.++.++..++.+|..+++.+.. .|...+-...+++.|..+.. ..+++|+++
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~------------~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 116 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK------------RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK 116 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH------------HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH------------HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence 566777778889999999999999999998865 36677777778888888864 367899999
Q ss_pred HHHHHHHh
Q 039940 437 AVTILETY 444 (449)
Q Consensus 437 a~~~i~~~ 444 (449)
+..+++..
T Consensus 117 il~li~~W 124 (149)
T 3g2s_A 117 ILELLYSW 124 (149)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998863
No 146
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=88.20 E-value=1.8 Score=32.85 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=56.4
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHhcC------CCHHHHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLKSH------GNNGIREK 436 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~i~~~ 436 (449)
++..|..-+.+.++.++..|+.+|..+++.+.. .|...+.....++.|..+... .+++|+++
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~------------~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 106 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE------------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR 106 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence 466677778899999999999999999998754 367777777888888887542 47899999
Q ss_pred HHHHHHHh
Q 039940 437 AVTILETY 444 (449)
Q Consensus 437 a~~~i~~~ 444 (449)
+..+++..
T Consensus 107 il~li~~W 114 (148)
T 1mhq_A 107 VIEILFSW 114 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998863
No 147
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=88.09 E-value=14 Score=33.03 Aligned_cols=88 Identities=8% Similarity=0.089 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHh
Q 039940 37 SMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKL 116 (449)
Q Consensus 37 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 116 (449)
..+...+....+++... ++. .-..+++.++.+-.+++ .+++...+..|...+....+... ..++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46777788888876543 222 22577999999988888 89999999999998874444332 346788888
Q ss_pred hCCCChHHHHHHHHHHHHH
Q 039940 117 LASPSDDVREQAVWALGNI 135 (449)
Q Consensus 117 l~~~~~~~~~~a~~~L~~l 135 (449)
+.++++.+...++.+..++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 8888999998888888776
No 148
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=86.04 E-value=20 Score=32.74 Aligned_cols=263 Identities=15% Similarity=0.084 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHhccCC--CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHh
Q 039940 39 QLEAATQFRRLLSIER--SLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKL 116 (449)
Q Consensus 39 ~~~a~~~L~~l~~~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 116 (449)
.......|..+...+. ....+..++...+..|++++++++ ++-+...-.+|..+-......|..+... +-..+..+
T Consensus 134 LqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~f 211 (449)
T 2npp_B 134 LQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRF 211 (449)
T ss_dssp HHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3344555666654321 122355566677889999999999 8999988888888776444455444332 23445555
Q ss_pred hCC-CChHHHHHHHHHHHHHhcCCC-chhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchH
Q 039940 117 LAS-PSDDVREQAVWALGNIVAHSP-GCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVL 194 (449)
Q Consensus 117 l~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l 194 (449)
+.. ....-....+.+++.+..+-. ..+..- ..-....++.+.....-...-.+...|+..+...++. ....++
T Consensus 212 i~e~e~~nGIaeLLeilgSIinGfa~PLKeeh-k~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~----L~~~vi 286 (449)
T 2npp_B 212 IYETEHHNGIAELLEILGSIINGFALPLKEEH-KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----LTEPVV 286 (449)
T ss_dssp HHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHH-HHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG----GHHHHH
T ss_pred hcccCCCCCHHHHHHHHHHHHhccCCCCcHHH-HHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH----hHHHHH
Confidence 432 222223346677777764421 111110 0000112222221111122233455555555544321 112233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHcccC-ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHH
Q 039940 195 PALAQLIHLDDEEVLRNVCWTLSNLSDG-TNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVI 273 (449)
Q Consensus 195 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 273 (449)
..|++.=-..+..-...-+.-+..+... .+.....+.. .++..+..++.+++..|.+.|+..+.| +.....+.
T Consensus 287 ~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~~li~ 360 (449)
T 2npp_B 287 MALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMSLIS 360 (449)
T ss_dssp HHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHHHHH
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHHHHHH
Confidence 3333322223333333333444444433 2333332332 467788888889888888888765522 22221111
Q ss_pred h--cCCHHHHHHHhc-----cCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 039940 274 N--HGAVPYLLALLI-----NNHKKSIKKESCWTVSNITAGNRKQIQAV 315 (449)
Q Consensus 274 ~--~~~l~~L~~ll~-----~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 315 (449)
+ ..++|.+...+. +- +..++..|..++.-+...++.....+
T Consensus 361 ~n~~~IlPii~p~L~~~s~~HW-n~~V~~la~~vlk~l~e~d~~lf~~c 408 (449)
T 2npp_B 361 DNAAKILPIMFPSLYRNSKTHW-NKTIHGLIYNALKLFMEMNQKLFDDC 408 (449)
T ss_dssp TTHHHHHHHHHHHHTSCTTCCS-STTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hchhhhHHhhHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 1 124566666552 22 67799999999998877777654433
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=85.23 E-value=2.2 Score=35.09 Aligned_cols=76 Identities=12% Similarity=0.042 Sum_probs=59.7
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhh
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEA 395 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~ 395 (449)
.+..|..-+.+.++.++..|+..|-.++.++...+...+....+++.|..++.. .++.|+.+++..+.........
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 355667778888999999999999999998877777776666677777777754 5778999999999888765543
No 150
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=85.23 E-value=21 Score=32.11 Aligned_cols=256 Identities=15% Similarity=0.093 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhccCCCCc--HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHHhh
Q 039940 40 LEAATQFRRLLSIERSLP--IDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVKLL 117 (449)
Q Consensus 40 ~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l 117 (449)
......|.++...+.-++ .+..++...+..|+.+++++| ++-+...-.+|..+-......|..+.. .+-..+..++
T Consensus 102 qlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeD-prER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fi 179 (403)
T 3fga_B 102 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFI 179 (403)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHh
Confidence 334455555544321111 233445566888999999999 899998888888887655544444432 2224455544
Q ss_pred CC-CChHHHHHHHHHHHHHhcCCC-chhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 039940 118 AS-PSDDVREQAVWALGNIVAHSP-GCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLP 195 (449)
Q Consensus 118 ~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~ 195 (449)
.. ..-.-....+.+++.+..+-. ..+..- ..-....++.+.....-...-.+...|+..+...+|. ....++.
T Consensus 180 ye~e~~~GIaeLLeilgsIinGfa~PLkeeh-k~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~----L~~~vi~ 254 (403)
T 3fga_B 180 YETEHHNGIAELLEILGSIINGFALPLKEEH-KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----LTEPVVM 254 (403)
T ss_dssp HTTCCCTTHHHHHHHHHHHHHHCCSSCCHHH-HHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGG----GHHHHHH
T ss_pred cCcccCCCHHHHHHHHHHHHcccCCCchHHH-HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCch----hHHHHHH
Confidence 32 111222235566666553221 111100 0000111222221111122234455555555554431 1122233
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHcccC-ChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHh
Q 039940 196 ALAQLIHLDDEEVLRNVCWTLSNLSDG-TNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVIN 274 (449)
Q Consensus 196 ~l~~ll~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~ 274 (449)
.+++.=-..++.-...-+.-+..+... ++.....+.. .++..+...+.+++..|.+.|+..+.| +.....+.+
T Consensus 255 ~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnN-----e~i~~li~~ 328 (403)
T 3fga_B 255 ALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMSLISD 328 (403)
T ss_dssp HHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHHHHHT
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhcc-----HHHHHHHHH
Confidence 333222233333333333444444433 2333332332 467788888888988888888766521 222211111
Q ss_pred --cCCHHHHHHHh----ccCCchhHHHHHHHHHHHHhcCC
Q 039940 275 --HGAVPYLLALL----INNHKKSIKKESCWTVSNITAGN 308 (449)
Q Consensus 275 --~~~l~~L~~ll----~~~~~~~v~~~a~~~l~nl~~~~ 308 (449)
..++|.+...+ +..=+..++..+..++..+...+
T Consensus 329 n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 329 NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp THHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhC
Confidence 12444444444 22216788888888888876544
No 151
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=85.06 E-value=16 Score=30.63 Aligned_cols=141 Identities=19% Similarity=0.212 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhh
Q 039940 292 SIKKESCWTVSNITAG-NRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDL 370 (449)
Q Consensus 292 ~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l 370 (449)
+.+.....-+..++.+ ++.... ++++.++.+..+.+.++|+..+..+...+.. ..+... .+++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~-----~~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLP-----HVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHH
Confidence 4666666666665543 333222 3566777766677889999999998888754 223222 267788888
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCC-cccHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039940 371 LLCADPEIVTVCLKGLENILKVGEAKKNRGSTIG-DVNQYARLVEGAEGFKKIEDLKSHGNNGIREKAVTILETYW 445 (449)
Q Consensus 371 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~a~~~i~~~~ 445 (449)
++++|+.+.+.++.+..+++...-..-......+ ......+.+. ...+.+-++.++.+..++-.+.|.+++..
T Consensus 99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 8888999999999888888766543332210000 0112233332 23566777788899999999999999854
No 152
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=82.31 E-value=12 Score=33.43 Aligned_cols=192 Identities=12% Similarity=0.070 Sum_probs=96.0
Q ss_pred hHHHHhCCChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcccccHHHHHHHHHHHHHhhc
Q 039940 101 TKVLIDHGAVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEHARLSMLRIGTWTLSNLCK 180 (449)
Q Consensus 101 ~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 180 (449)
....++...+..|+.++.++|++-|.....+|..+-+.-...|..+. ..+-..+...+.......-....+.+++.+..
T Consensus 167 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Ir-k~i~nif~~fiye~e~~~GIaeLLeilgsIIn 245 (392)
T 2jak_A 167 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIIN 245 (392)
T ss_dssp HTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 34455567788999999999999999999999887554444444442 22223344555333333334456667777776
Q ss_pred CCCCC-ChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHH
Q 039940 181 GKPQP-PFDQVRPVLPALAQLIHLDD-EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPSPSVLIPALRTV 258 (449)
Q Consensus 181 ~~~~~-~~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l 258 (449)
+...+ ......-....++.+.+... ...-.....|+......++.....+ +..+++.=-.++..-...-+.-+
T Consensus 246 gfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~el 320 (392)
T 2jak_A 246 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNEL 320 (392)
T ss_dssp TCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHH
Confidence 65322 22222333455555555443 1222234444444444444333311 22222221112222222223333
Q ss_pred HHhhcCC-hhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHH
Q 039940 259 GNIVTGD-DFQTQCVINHGAVPYLLALLINNHKKSIKKESCWT 300 (449)
Q Consensus 259 ~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 300 (449)
..+...- +...+.+. ..++..+..++.+. +.+|.+.|...
T Consensus 321 eeiLe~~~~~~f~~i~-~~lF~~la~ci~S~-hfqVAErAL~~ 361 (392)
T 2jak_A 321 EEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYY 361 (392)
T ss_dssp HHHHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 3333322 22222222 23666777777777 77777776543
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=82.27 E-value=4.6 Score=33.09 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=51.8
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHh-cCCCHHHHHHHHHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLK-SHGNNGIREKAVTIL 441 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~i~~~a~~~i 441 (449)
++..|..-+.+.++.++..++.+|..+++.+.. .|...+.+...++.+..+. ...+++|++++..++
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~------------~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li 110 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA------------PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELV 110 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH------------HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 455666677889999999999999999998754 2455555555666666663 356789999999888
Q ss_pred HH
Q 039940 442 ET 443 (449)
Q Consensus 442 ~~ 443 (449)
+.
T Consensus 111 ~~ 112 (220)
T 1dvp_A 111 QT 112 (220)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=82.24 E-value=4.4 Score=33.32 Aligned_cols=70 Identities=14% Similarity=0.291 Sum_probs=53.2
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHH-hcCCCHHHHHHHHHHH
Q 039940 363 CIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDL-KSHGNNGIREKAVTIL 441 (449)
Q Consensus 363 ~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~i~~~a~~~i 441 (449)
++..|..-+.+.++.++..|+.+|..+++.+... |...+.....++.|..+ ....+++|++++..++
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li 113 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI 113 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4666777788899999999999999999887652 45555555666666655 3456788999999988
Q ss_pred HHh
Q 039940 442 ETY 444 (449)
Q Consensus 442 ~~~ 444 (449)
+..
T Consensus 114 ~~W 116 (226)
T 3zyq_A 114 QAW 116 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
No 155
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=81.89 E-value=22 Score=29.80 Aligned_cols=89 Identities=10% Similarity=0.066 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHHhCCChHHHHH
Q 039940 36 NSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVK 115 (449)
Q Consensus 36 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 115 (449)
.......+.....++........ ..+++.++.+..+++ .+++...+..+...+...++... ..++.|..
T Consensus 29 ~~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~ 97 (257)
T 3gs3_A 29 PSTKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP-----HVINVVSM 97 (257)
T ss_dssp HHHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 36888888888887765422222 345777888776766 89999999999999864443332 34788888
Q ss_pred hhCCCChHHHHHHHHHHHHH
Q 039940 116 LLASPSDDVREQAVWALGNI 135 (449)
Q Consensus 116 ~l~~~~~~~~~~a~~~L~~l 135 (449)
+++++++.+...++.+..++
T Consensus 98 Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 98 LLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HTTCSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHH
Confidence 88888899998888877776
No 156
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=81.02 E-value=4 Score=31.30 Aligned_cols=74 Identities=8% Similarity=0.030 Sum_probs=56.7
Q ss_pred ChHHHHHHhh-cCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHH-HHhhccC---CCHHHHHHHHHHHHHHHHhh
Q 039940 320 LIVPLVNLLQ-DAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP-LCDLLLC---ADPEIVTVCLKGLENILKVG 393 (449)
Q Consensus 320 ~~~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~-L~~ll~~---~~~~~~~~~~~~l~~l~~~~ 393 (449)
.+..|..-+. +.++.++..|+..|-.++.++.+.+...+....+++. |+.++.. .+..|+.+++..+.......
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 3446666776 4688999999999999999988888777777777877 6777743 24578999998888777654
No 157
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=78.98 E-value=5.2 Score=29.83 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=53.9
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcC-ChHHHHhhccCCC--------HHHHHHHHHHHHHHH
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREG-CIKPLCDLLLCAD--------PEIVTVCLKGLENIL 390 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~-~~~~L~~ll~~~~--------~~~~~~~~~~l~~l~ 390 (449)
+++.|.+-|.+.++.++..|+..|..++.+|++.++..+.+.- .|..+.+.--.++ ..||..|-+++..|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 5678888899999999999999999999999988888877642 2222222211122 347888888888777
Q ss_pred Hhhh
Q 039940 391 KVGE 394 (449)
Q Consensus 391 ~~~~ 394 (449)
....
T Consensus 130 d~~~ 133 (140)
T 1vdy_A 130 SEEN 133 (140)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 5443
No 158
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=75.41 E-value=10 Score=28.96 Aligned_cols=70 Identities=11% Similarity=0.189 Sum_probs=51.3
Q ss_pred ChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHH-HHHHhc---CCCHHHHHHH
Q 039940 363 CIKPLCDLLL-CADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKK-IEDLKS---HGNNGIREKA 437 (449)
Q Consensus 363 ~~~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~---~~~~~i~~~a 437 (449)
++..|..-++ +.++.++..|+.+|..+++.+.. .|...+.+...++. +..+.. .+...|++++
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~------------~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~ki 121 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH------------RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKV 121 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH------------HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 4566667776 57899999999999999998754 35666666667776 555542 2346899999
Q ss_pred HHHHHHh
Q 039940 438 VTILETY 444 (449)
Q Consensus 438 ~~~i~~~ 444 (449)
..+++..
T Consensus 122 l~li~~W 128 (157)
T 1elk_A 122 LNLIQSW 128 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988763
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=75.23 E-value=2.2 Score=34.99 Aligned_cols=75 Identities=11% Similarity=0.017 Sum_probs=53.3
Q ss_pred hhcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHhcC
Q 039940 21 LEILPAMVAGVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAGIVPRFVEFLLREDYPRLQFEAAWVLTNIAS 95 (449)
Q Consensus 21 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 95 (449)
-+++..|.+.|++.++.+++.|+..|-.+....+......+....++..|+.++.+..+..++..++..+...+.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 356667778888899999999998888887654333444555556777777777654447888888777766553
No 160
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=72.32 E-value=79 Score=32.57 Aligned_cols=188 Identities=14% Similarity=0.071 Sum_probs=101.0
Q ss_pred CHHHHHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHH-----HcccCChh
Q 039940 151 ALIPLLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLS-----NLSDGTND 225 (449)
Q Consensus 151 ~i~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~-----~l~~~~~~ 225 (449)
.+..++++. .+..++++..|-.++.......+.........++..|-.-+...+.+-.+-++.+|. ..+..+..
T Consensus 134 ll~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~ 212 (997)
T 1vsy_5 134 LLVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYK 212 (997)
T ss_dssp HHHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHH
T ss_pred HHHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChH
Confidence 344566654 677889999999999998877644333333333333333333445555566666554 12222221
Q ss_pred HHHHHHHhCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCCh------------------------hhHHH----------
Q 039940 226 KIQAVIEAGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDD------------------------FQTQC---------- 271 (449)
Q Consensus 226 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~------------------------~~~~~---------- 271 (449)
.. ..+++.++.....++++++..+-.+...+..... ...+.
T Consensus 213 ~~-----~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 213 DI-----GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp HH-----HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred HH-----HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 11 1456667777666777777666555444432100 00000
Q ss_pred -HHh--cCCHHHHHHHhccCCc--hhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHh
Q 039940 272 -VIN--HGAVPYLLALLINNHK--KSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNA 346 (449)
Q Consensus 272 -~~~--~~~l~~L~~ll~~~~~--~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 346 (449)
..+ .++...++.+.++..+ ......++..+.++....+ ......++..+++.+.++++.+|..|..++..+
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVFSIISQISTKHPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 000 1233344455533325 5666666677566653110 000112455677778888999999999888666
Q ss_pred hc
Q 039940 347 TK 348 (449)
Q Consensus 347 ~~ 348 (449)
..
T Consensus 364 l~ 365 (997)
T 1vsy_5 364 CN 365 (997)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 161
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=69.41 E-value=20 Score=36.90 Aligned_cols=187 Identities=12% Similarity=0.102 Sum_probs=109.4
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc---cccHHHHHHHHHHHH--HhhcCCC
Q 039940 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE---HARLSMLRIGTWTLS--NLCKGKP 183 (449)
Q Consensus 109 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~l~--~l~~~~~ 183 (449)
++.-|+++-.+...++|..|=.+|......-+..+.. +++.+++.|.. +.+.+-.+-|+++|. .+... -
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~ 207 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-L 207 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-G
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-H
Confidence 3566777777888999999999999988766655544 36678887754 455566666666554 11111 1
Q ss_pred CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcccC--------------------Ch----hHHHH----------
Q 039940 184 QPPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLSDG--------------------TN----DKIQA---------- 229 (449)
Q Consensus 184 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~--------------------~~----~~~~~---------- 229 (449)
.........+++.+++....+.+.++.-+-.+...+... ++ ...+.
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 223444567777777776666555544333222222110 00 00000
Q ss_pred HHH---hCcHHHHHHhh-CCCC--CcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHH
Q 039940 230 VIE---AGVCGPLVELL-GHPS--PSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSN 303 (449)
Q Consensus 230 ~~~---~~~~~~L~~ll-~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n 303 (449)
... .++...++... ...+ +.....++..+.++....+. .....++..+++.+.++ ++.+|..|..++..
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~ 362 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLS 362 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Confidence 011 13333444554 3355 77777777776666533221 11234667788888888 89999999988876
Q ss_pred Hhc
Q 039940 304 ITA 306 (449)
Q Consensus 304 l~~ 306 (449)
+..
T Consensus 363 il~ 365 (997)
T 1vsy_5 363 TCN 365 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 162
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=68.83 E-value=6.7 Score=32.90 Aligned_cols=107 Identities=10% Similarity=0.134 Sum_probs=65.4
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCC-cHHHHHHcCCHHHHHHhhcC----C---CCHHHHHHHHHHHHHhcCCChhhhHH
Q 039940 32 WSDDNSMQLEAATQFRRLLSIERSL-PIDEVIQAGIVPRFVEFLLR----E---DYPRLQFEAAWVLTNIASGTSVNTKV 103 (449)
Q Consensus 32 ~s~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~i~~L~~ll~~----~---~~~~~~~~a~~~L~~l~~~~~~~~~~ 103 (449)
.+.++..++.+++.++|+... .. ....+........+++.+.+ . ....++..++..+.|++......+.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~--~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~- 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNN--ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS- 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTC--TTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-
T ss_pred CCCchhHHHHHHHHHHHcccC--CchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-
Confidence 356788999999999999765 34 23333322223444444322 1 1267888999999998872111110
Q ss_pred HHhCCChHHHHHhhCC---------CChHHHHHHHHHHHHHhcCCCchh
Q 039940 104 LIDHGAVPIFVKLLAS---------PSDDVREQAVWALGNIVAHSPGCR 143 (449)
Q Consensus 104 ~~~~~~i~~L~~~l~~---------~~~~~~~~a~~~L~~l~~~~~~~~ 143 (449)
+......+++++.. .+++....++.+++++...++..+
T Consensus 177 --~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~ 223 (253)
T 3gae_A 177 --DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 223 (253)
T ss_dssp --CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGG
T ss_pred --hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHH
Confidence 12334455555542 367888899999999986555443
No 163
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=66.16 E-value=12 Score=27.59 Aligned_cols=95 Identities=17% Similarity=0.104 Sum_probs=60.9
Q ss_pred ChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 039940 320 LIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKVGEAKKNR 399 (449)
Q Consensus 320 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 399 (449)
+++.|+..+++-+-.+...++..|...- .. +++.+...++++|..-... +|..+....+..
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~---------l~p~I~~vl~s~D~~W~yw---il~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ----SI---------AMPHILTILQGNDIMWKYW---VIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH----HH---------HHHHHHHHHHSSCHHHHHH---HHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc----Hh---------hHHHHHHHHHcCChHHHHH---HHHHHHHcCCHH---
Confidence 5778999999999888888777776542 12 3555666777777764444 443333322211
Q ss_pred CCCCCcccHHHHHHHhcchHHHHHHHhcCC-----CHHHHHHHHHHHHHhcCC
Q 039940 400 GSTIGDVNQYARLVEGAEGFKKIEDLKSHG-----NNGIREKAVTILETYWLK 447 (449)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~~i~~~a~~~i~~~~~~ 447 (449)
.... ....|.++...+ ..++.+.|.+++++||.+
T Consensus 93 ---------~~~~-----l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 93 ---------NKQL-----VKSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp ---------HHHH-----HHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred ---------HHHH-----HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 1222 246677776664 477999999999999974
No 164
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=65.65 E-value=7.8 Score=35.04 Aligned_cols=110 Identities=12% Similarity=0.159 Sum_probs=69.4
Q ss_pred HhcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHc-CCHHHHHHhhcCC-------CCHHHHHHHHHHHHHhcCCChhhh
Q 039940 30 GVWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQA-GIVPRFVEFLLRE-------DYPRLQFEAAWVLTNIASGTSVNT 101 (449)
Q Consensus 30 ~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~i~~L~~ll~~~-------~~~~~~~~a~~~L~~l~~~~~~~~ 101 (449)
.+.+..+..++.+++.++|+... ......+... .....+++.+... ....++.+++..+.|++......+
T Consensus 270 ~l~~~~~an~MltlR~laNlF~~--~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~ 347 (425)
T 3pst_A 270 GLGNKNITLTMLTVRILVNCFNN--ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN 347 (425)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTC--TTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hcCCCChhHHHHHHHHHHHhcCC--cchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc
Confidence 33456789999999999999765 3434444432 2345566655321 125788899999999987321111
Q ss_pred HHHHhCCChHHHHHhhC---------CCChHHHHHHHHHHHHHhcCCCchhh
Q 039940 102 KVLIDHGAVPIFVKLLA---------SPSDDVREQAVWALGNIVAHSPGCRN 144 (449)
Q Consensus 102 ~~~~~~~~i~~L~~~l~---------~~~~~~~~~a~~~L~~l~~~~~~~~~ 144 (449)
. +......+.+++. ..+.+....++.+|++|....+..+.
T Consensus 348 ~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~ 396 (425)
T 3pst_A 348 S---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQ 396 (425)
T ss_dssp S---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred c---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 0 1234456666665 24788889999999999865554443
No 165
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=62.96 E-value=35 Score=25.52 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=57.7
Q ss_pred HHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHh
Q 039940 353 EQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLK 426 (449)
Q Consensus 353 ~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 426 (449)
.....|++.|++..+-..+.. ++..++...+.+|.++= - -.+.++++|.=+.+.-+.
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I-------------~~e~Lk~SglGkvv~~l~ 114 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----I-------------HKEHLVTSGVGKIVYFYS 114 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----C-------------CHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----C-------------CHHHhhcCCCCcchhhhh
Confidence 456778889999888888763 46678999888887761 1 157788888888888887
Q ss_pred cCC--CHHHHHHHHHHHHHh
Q 039940 427 SHG--NNGIREKAVTILETY 444 (449)
Q Consensus 427 ~~~--~~~i~~~a~~~i~~~ 444 (449)
.|+ .+++++.|.++++++
T Consensus 115 k~~~et~~nk~la~~Li~~W 134 (145)
T 2xpp_A 115 INPKESKEVRASAKALVQKW 134 (145)
T ss_dssp HCTTSCHHHHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHH
Confidence 665 578999999999874
No 166
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=62.12 E-value=55 Score=26.53 Aligned_cols=134 Identities=6% Similarity=-0.086 Sum_probs=79.4
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-CCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHH
Q 039940 161 EHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL-DDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPL 239 (449)
Q Consensus 161 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L 239 (449)
+++.-+.+..++..+....... ....++.+-.++.+ ++..+....+.++..+....+. .+.+.+
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~--------~~~~~i 129 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT--------ELPTIF 129 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG--------GHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH--------HHHHHH
Confidence 5555666777777776543221 12334444555543 4566666555556555433332 234567
Q ss_pred HHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 039940 240 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVID 317 (449)
Q Consensus 240 ~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~ 317 (449)
.....+++.-++..|+..+..... ...... .++.+-..+.++ +.-|++...|+|..++..+++....++.
T Consensus 130 ~~W~~s~~~w~rR~ai~~~l~~~~--~~~~~~-----~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQLMLKE--KTNQDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTTTTCGG--GCCHHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHH--CCCHHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 778888888788777664422211 111111 233444466677 8889999999999999888886665554
No 167
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=61.48 E-value=12 Score=28.35 Aligned_cols=75 Identities=12% Similarity=0.010 Sum_probs=53.3
Q ss_pred ChHHHHHHhhc-CchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHH-HHhhccCC---CHHHHHHHHHHHHHHHHhhh
Q 039940 320 LIVPLVNLLQD-AEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKP-LCDLLLCA---DPEIVTVCLKGLENILKVGE 394 (449)
Q Consensus 320 ~~~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~-L~~ll~~~---~~~~~~~~~~~l~~l~~~~~ 394 (449)
.+..|..-+.. .++.++..|+..|-.++.+++..+...+....++.. |..++... ...|+.+++.++........
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 34456666664 477788889999999999888877777665556653 66666532 34799999999888776544
No 168
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=59.45 E-value=8 Score=34.22 Aligned_cols=108 Identities=10% Similarity=0.126 Sum_probs=67.0
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcC-CHHHHHHhhcC----CC---CHHHHHHHHHHHHHhcCCChhhhH
Q 039940 31 VWSDDNSMQLEAATQFRRLLSIERSLPIDEVIQAG-IVPRFVEFLLR----ED---YPRLQFEAAWVLTNIASGTSVNTK 102 (449)
Q Consensus 31 l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-~i~~L~~ll~~----~~---~~~~~~~a~~~L~~l~~~~~~~~~ 102 (449)
+.+..+..++.+++.++|+... ......+.... ....+++.+.+ .. +..++.+++..+.|++......+
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~--~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~- 284 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNN--ENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN- 284 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTC--TTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred cCCCChhHHHHHHHHHHHhccC--cchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc-
Confidence 3456789999999999999764 34344444221 23334444321 11 25788899999999987321111
Q ss_pred HHHhCCChHHHHHhhC---------CCChHHHHHHHHHHHHHhcCCCchh
Q 039940 103 VLIDHGAVPIFVKLLA---------SPSDDVREQAVWALGNIVAHSPGCR 143 (449)
Q Consensus 103 ~~~~~~~i~~L~~~l~---------~~~~~~~~~a~~~L~~l~~~~~~~~ 143 (449)
.+......+.+++. ..+.+....++.+|+++....+..+
T Consensus 285 --~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~ 332 (362)
T 3l3f_X 285 --SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 332 (362)
T ss_dssp --SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred --chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 01234456666665 2578899999999999986554443
No 169
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=57.21 E-value=79 Score=25.85 Aligned_cols=140 Identities=13% Similarity=0.109 Sum_probs=82.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHccc-CChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHH-HHHHHhhcCChhhHHH
Q 039940 195 PALAQLIHLDDEEVLRNVCWTLSNLSD-GTNDKIQAVIEAGVCGPLVELLG-HPSPSVLIPAL-RTVGNIVTGDDFQTQC 271 (449)
Q Consensus 195 ~~l~~ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~-~~l~~l~~~~~~~~~~ 271 (449)
..+..+.+++..+.+..++..+..... ..++ .++.+-.++. .+++.+....+ .+++.+....+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~---- 130 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE---- 130 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG----
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH----
Confidence 355566667767777777776654321 1121 1222333333 34555544332 344444332222
Q ss_pred HHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccC
Q 039940 272 VINHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAG 350 (449)
Q Consensus 272 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 350 (449)
...+.+...+.++ +.-+++.|+..+..... .++.. .++.+...+.+++.-|+....|+|..+...
T Consensus 131 ----~~~~~l~~W~~s~-~~w~rR~ai~~~l~~~~~~d~~~--------~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~- 196 (232)
T 3jxy_A 131 ----LISAYIPKWIASD-NIWLQRAAILFQLKYKQKMDEEL--------LFWIIGQLHSSKEFFIQKAIGWVLREYAKT- 196 (232)
T ss_dssp ----GGGGTHHHHHHSS-CHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-
T ss_pred ----HHHHHHHHHhcCC-chHHHHHHHHHHHHHHhCCCHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-
Confidence 2456788888888 88888888765433222 23221 234455667788999999999999999997
Q ss_pred CHHHHHHHHHc
Q 039940 351 TQEQIKYLVRE 361 (449)
Q Consensus 351 ~~~~~~~l~~~ 361 (449)
+++....+++.
T Consensus 197 ~p~~v~~fl~~ 207 (232)
T 3jxy_A 197 NPDVVWEYVQN 207 (232)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 67776666654
No 170
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=57.10 E-value=76 Score=25.66 Aligned_cols=139 Identities=9% Similarity=-0.001 Sum_probs=84.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHcccC-ChhHHHHHHHhCcHHHHHHhhC-CCCCcchhhHHHHHHHhhcCChhhHHHH
Q 039940 195 PALAQLIHLDDEEVLRNVCWTLSNLSDG-TNDKIQAVIEAGVCGPLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCV 272 (449)
Q Consensus 195 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 272 (449)
..+..+..++.-+.+.-++..+...... .++. ++.+-.++. .+++.+....+.+++.+....+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~----- 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----- 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG-----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH-----
Confidence 4455666667777777777777655422 2211 222233343 35666666655666666543332
Q ss_pred HhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCC
Q 039940 273 INHGAVPYLLALLINNHKKSIKKESCWTVSNITA-GNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGT 351 (449)
Q Consensus 273 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 351 (449)
...+.+.....++ +.-+++.|+.++..... .+++. .++.+-..+.+++.-|++...|+|..+... +
T Consensus 124 ---~~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~~~~~~~--------~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~ 190 (220)
T 2b6c_A 124 ---ELPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-N 190 (220)
T ss_dssp ---GHHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-C
T ss_pred ---HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHhh-C
Confidence 1345678888888 88888888765533322 23221 133444466777899999999999999998 6
Q ss_pred HHHHHHHHH
Q 039940 352 QEQIKYLVR 360 (449)
Q Consensus 352 ~~~~~~l~~ 360 (449)
++....++.
T Consensus 191 ~~~v~~fl~ 199 (220)
T 2b6c_A 191 PQWVEELMK 199 (220)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666555554
No 171
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=55.62 E-value=58 Score=27.15 Aligned_cols=133 Identities=11% Similarity=0.038 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHhCCChHHHHH-hhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc
Q 039940 83 QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVK-LLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE 161 (449)
Q Consensus 83 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 161 (449)
+..++..++-+..+.+. . +.+..++. .+.+.++..+-.++++++|+.......+..+........++..+..
T Consensus 71 ~fP~lDllRl~~~~~~~-~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPY-S------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSC-G------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCch-H------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 55677777777663322 1 23333333 3335567888999999999976655345555443223444544421
Q ss_pred -------cccHHHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhc-----CCCHHHHHHHHHHHHHcccC
Q 039940 162 -------HARLSMLRIGTWTLSNLCKGKP--QPPFDQVRPVLPALAQLIH-----LDDEEVLRNVCWTLSNLSDG 222 (449)
Q Consensus 162 -------~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~l~~ll~-----~~~~~~~~~~~~~l~~l~~~ 222 (449)
..+..++..++..+.|++.... ..........+..+...+. ..|++....++-+++++...
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 1356788888888888886531 1112222223333332211 23677888888888887743
No 172
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=53.51 E-value=1e+02 Score=27.51 Aligned_cols=184 Identities=10% Similarity=0.059 Sum_probs=96.7
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhhCCCC-CcchhhHHHHHHHhhcCCh---
Q 039940 191 RPVLPALAQLIHLDDEEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELLGHPS-PSVLIPALRTVGNIVTGDD--- 266 (449)
Q Consensus 191 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~l~~l~~~~~--- 266 (449)
...+-.|+.++.++|+.-|.....++..+-..-..... .+...+-..+.+.+...+ ..-..+.+.+++.+..+..
T Consensus 173 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~-~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PL 251 (392)
T 2jak_A 173 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 251 (392)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCC
Confidence 56788899999999999998888888776533322222 222234455566655433 3344567888888876642
Q ss_pred --hhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHH
Q 039940 267 --FQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAIS 344 (449)
Q Consensus 267 --~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~ 344 (449)
+... + ....|+.+.+.+.-......-..++..+...++.....+ +..+++..=..+..=...-+.-+.
T Consensus 252 Keehk~-F----l~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 252 KEEHKI-F----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp CHHHHH-H----HHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred cHHHHH-H----HHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHH
Confidence 2222 2 123444455444222233344555555555444332222 222222221112111112223344
Q ss_pred HhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHH
Q 039940 345 NATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGL 386 (449)
Q Consensus 345 ~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l 386 (449)
.+....+++....+.. .+...+..++.+.+-+|.+.|+...
T Consensus 322 eiLe~~~~~~f~~i~~-~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 322 EILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHTCCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 4444444554443322 2677788888898888888876543
No 173
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=51.59 E-value=37 Score=30.70 Aligned_cols=131 Identities=12% Similarity=0.073 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHhCCChHHHH-HhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc
Q 039940 83 QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFV-KLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE 161 (449)
Q Consensus 83 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 161 (449)
+..++.+++-+..+.+.. +.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 456777777776633321 1233333 33345668888899999999966554334444332224455655521
Q ss_pred -------cccHHHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhc---------CCCHHHHHHHHHHHHHcccCC
Q 039940 162 -------HARLSMLRIGTWTLSNLCKGKP--QPPFDQVRPVLPALAQLIH---------LDDEEVLRNVCWTLSNLSDGT 223 (449)
Q Consensus 162 -------~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~l~~ll~---------~~~~~~~~~~~~~l~~l~~~~ 223 (449)
..+..++..++..+.|++.... ... ...+..+..++. ..|.+....++-+++++....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 2256788888888888886531 111 123344444444 358889999999999988544
Q ss_pred h
Q 039940 224 N 224 (449)
Q Consensus 224 ~ 224 (449)
+
T Consensus 392 ~ 392 (425)
T 3pst_A 392 P 392 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 174
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=46.51 E-value=34 Score=30.29 Aligned_cols=131 Identities=12% Similarity=0.075 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHhCCChHHHHH-hhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHc-
Q 039940 83 QFEAAWVLTNIASGTSVNTKVLIDHGAVPIFVK-LLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLN- 160 (449)
Q Consensus 83 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~- 160 (449)
+..++..++-+..+.+. . +.+..++. .+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 180 ~FP~LDLLRl~v~~~~~-~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPY-S------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSC-G------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCCh-H------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 55677777776663321 1 22333332 334566888889999999996655433444422111233444441
Q ss_pred ------ccccHHHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhc---------CCCHHHHHHHHHHHHHcccCC
Q 039940 161 ------EHARLSMLRIGTWTLSNLCKGKP--QPPFDQVRPVLPALAQLIH---------LDDEEVLRNVCWTLSNLSDGT 223 (449)
Q Consensus 161 ------~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~l~~ll~---------~~~~~~~~~~~~~l~~l~~~~ 223 (449)
...+..++..++..+.|++.... ... ...++.+..++. ..|.+....++-+++++....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 12356788888888888886531 111 233344555544 358889999999999988543
Q ss_pred h
Q 039940 224 N 224 (449)
Q Consensus 224 ~ 224 (449)
+
T Consensus 329 ~ 329 (362)
T 3l3f_X 329 P 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 175
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=44.00 E-value=41 Score=23.42 Aligned_cols=35 Identities=9% Similarity=0.239 Sum_probs=30.5
Q ss_pred HHHHHhcchHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 039940 410 ARLVEGAEGFKKIEDLKSH-GNNGIREKAVTILETY 444 (449)
Q Consensus 410 ~~~~~~~~~~~~l~~l~~~-~~~~i~~~a~~~i~~~ 444 (449)
.+.+++.++=..+..|..| ++++|...|..++...
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~W 82 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 82 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 6788888888999999776 9999999999998763
No 176
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=43.96 E-value=1.2e+02 Score=24.68 Aligned_cols=141 Identities=9% Similarity=0.037 Sum_probs=79.4
Q ss_pred HHHHHcccccHHHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-CCHHHHHHHH-HHHHHcccCChhHHHHHHH
Q 039940 155 LLAQLNEHARLSMLRIGTWTLSNLCKGKPQPPFDQVRPVLPALAQLIHL-DDEEVLRNVC-WTLSNLSDGTNDKIQAVIE 232 (449)
Q Consensus 155 l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~ 232 (449)
++..+-++...+.+..|+..+....... ....++.+-.++.. ++..+....+ .+++.+....+.
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~------- 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHI-------NETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE------- 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGC-------CGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-------
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-------
Confidence 4444435666677777776665432211 11334444455543 4555554432 333333322221
Q ss_pred hCcHHHHHHhhCCCCCcchhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 039940 233 AGVCGPLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQI 312 (449)
Q Consensus 233 ~~~~~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~ 312 (449)
...+.+...+.+++.-++..|+..+ +......... ..++.+...+.++ +.-|++...|+|..+...+++..
T Consensus 131 -~~~~~l~~W~~s~~~w~rR~ai~~~--l~~~~~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v 201 (232)
T 3jxy_A 131 -LISAYIPKWIASDNIWLQRAAILFQ--LKYKQKMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVV 201 (232)
T ss_dssp -GGGGTHHHHHHSSCHHHHHHHHHTT--TTCGGGCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHH
T ss_pred -HHHHHHHHHhcCCchHHHHHHHHHH--HHHHhCCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHH
Confidence 2446677778888877777776554 2221111111 1234455566777 88999999999999998888877
Q ss_pred HHHHHC
Q 039940 313 QAVIDA 318 (449)
Q Consensus 313 ~~l~~~ 318 (449)
..+++.
T Consensus 202 ~~fl~~ 207 (232)
T 3jxy_A 202 WEYVQN 207 (232)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766653
No 177
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=42.67 E-value=2.1e+02 Score=26.46 Aligned_cols=183 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred hchHHHHHHhhcCCC-----HHHHHHHHHHHHHcccCChhHHHHHHHhCcHHHHHHhh-CC-----CCCcchhhHHHHHH
Q 039940 191 RPVLPALAQLIHLDD-----EEVLRNVCWTLSNLSDGTNDKIQAVIEAGVCGPLVELL-GH-----PSPSVLIPALRTVG 259 (449)
Q Consensus 191 ~~~l~~l~~ll~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~-----~~~~v~~~a~~~l~ 259 (449)
...++.+...+.+.. .+....+.-.+...+..+....+ .+++.+.+++ .+ -+++.....+..+-
T Consensus 30 ~~ll~~L~t~~e~~~~p~~in~Lie~~~LnL~~~t~~~~~~~~-----~ll~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il 104 (500)
T 3vld_A 30 ENLLTQLENELNEDNLPEDINTLLRKCSLNLVTVVSLPDMDVK-----PLLATIKRFLTSNVSYDSLNYDYLLDVVDKLV 104 (500)
T ss_dssp HHHHHHHHHHHHTSSCCTTHHHHHHHHHHHHHHSCSCCSCCCH-----HHHHHHHHHHHCSSCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCchhHHHHHHHhhcchhcccCCcccHH-----HHHHHHHHHHcCCccccccCHHHHHHHHHHHH
Q ss_pred HhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchh---HH
Q 039940 260 NIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFD---IK 336 (449)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~---v~ 336 (449)
..+.. +.+.+.--++.++..|.++ .+.+...||.++. ..+-...+...+++..++.++.+.+.. +.
T Consensus 105 ~~~~F-----d~VLevysve~i~~aL~S~-~~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vv 173 (500)
T 3vld_A 105 PMADF-----DDVLEVYSAEDLVKALRSE-IDPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEKVENDKLI 173 (500)
T ss_dssp HHSCH-----HHHHHHSCHHHHHHHHTSS-CHHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHH
T ss_pred hcCCH-----HHHHHhCCHHHHHHHHhcC-ChHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCCCCcHHHH
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 039940 337 KEAAWAISNATKAGTQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILKV 392 (449)
Q Consensus 337 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~~ 392 (449)
...=.++..++.. +.+++-+-.+..+.+...=++.++-+..+.++.+.-++..
T Consensus 174 n~IE~~~~~Lssd---eLirrril~nnl~lL~~vK~~~~~i~~sRLLdll~il~~~ 226 (500)
T 3vld_A 174 TAIEKALERLSTD---ELIRRRLFDNNLPYLVSVKGRMETVSFVRLIDFLTIEFQF 226 (500)
T ss_dssp HHHHHHHHHHTTS---HHHHHHHHTTTHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCch---HHHHHHHHHHhHHHHHHHhcCCCceeHHHHHHHHHHHhcc
No 178
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=42.01 E-value=1.7e+02 Score=25.31 Aligned_cols=138 Identities=14% Similarity=0.150 Sum_probs=81.0
Q ss_pred chhhHHHHHHHhhcCChhhHHHHHhcCCHHHHHHH-hc----c---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCCh
Q 039940 250 VLIPALRTVGNIVTGDDFQTQCVINHGAVPYLLAL-LI----N---NHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLI 321 (449)
Q Consensus 250 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l-l~----~---~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~ 321 (449)
++++.+..+.-.....++. +. +....+|+|++. |. + ..+++|-.-.+..+..+-..-.+.+..+.+ .++
T Consensus 45 vKkeiLkLiet~i~~~~d~-~~-v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~-~VF 121 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDP-QM-VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD-AVF 121 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCH-HH-HHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHcCCCH-HH-HHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHH
Confidence 4455555555554433221 22 223456666542 21 1 114566666666666664433333333333 456
Q ss_pred HHHHHHhhcC---chhHHHHHHHHHHHhhccC-------CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 039940 322 VPLVNLLQDA---EFDIKKEAAWAISNATKAG-------TQEQIKYLVREGCIKPLCDLLLCADPEIVTVCLKGLENILK 391 (449)
Q Consensus 322 ~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~~l~~ 391 (449)
+.-+++++.+ -|+-|..=...|..+..++ ++++.+. +++.++...++.++++.+.++.++..++.
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 6666777653 5777777777777666553 2333333 57788888999999999999999998888
Q ss_pred hhhh
Q 039940 392 VGEA 395 (449)
Q Consensus 392 ~~~~ 395 (449)
...+
T Consensus 197 n~~~ 200 (321)
T 1w9c_A 197 NVAQ 200 (321)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7764
No 179
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=41.81 E-value=46 Score=25.15 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=47.6
Q ss_pred ChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHH-HHHHhc---CCCHHHHHHH
Q 039940 363 CIKPLCDLLLC-ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKK-IEDLKS---HGNNGIREKA 437 (449)
Q Consensus 363 ~~~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~---~~~~~i~~~a 437 (449)
++..|..-+.. .++.+...|+.+|..+++.+.. .|...+....+++. |..+.. +...+|++++
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~------------~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~ki 121 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGP------------SFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRI 121 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCH------------HHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCH------------HHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHH
Confidence 45566666664 5888888899999999988765 35555555555543 555533 2345799999
Q ss_pred HHHHHHh
Q 039940 438 VTILETY 444 (449)
Q Consensus 438 ~~~i~~~ 444 (449)
..+++..
T Consensus 122 l~li~~W 128 (152)
T 3rru_A 122 LNFIKTW 128 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 180
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=38.91 E-value=1e+02 Score=23.68 Aligned_cols=75 Identities=7% Similarity=0.027 Sum_probs=57.1
Q ss_pred HHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhhhhhhccCCCCCcccHHHHHHHhcchHHHHHHHh
Q 039940 353 EQIKYLVREGCIKPLCDLLLC------ADPEIVTVCLKGLENILKVGEAKKNRGSTIGDVNQYARLVEGAEGFKKIEDLK 426 (449)
Q Consensus 353 ~~~~~l~~~~~~~~L~~ll~~------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 426 (449)
.....|++.|++..+-..|.. ++-.++...+.+|..+= - -.+.++++|.=..+.-+.
T Consensus 67 ~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP----I-------------~~e~Lk~SglGkvV~~l~ 129 (170)
T 3nfq_A 67 NLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP----V-------------KTEHLKESGLGRVVIFYT 129 (170)
T ss_dssp GGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----C-------------CHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC----C-------------CHHHHhhCCCCceeeehh
Confidence 456778889999988888863 35678888888887652 1 156788888878887776
Q ss_pred cCC--CHHHHHHHHHHHHHh
Q 039940 427 SHG--NNGIREKAVTILETY 444 (449)
Q Consensus 427 ~~~--~~~i~~~a~~~i~~~ 444 (449)
.|+ .++++..|.+++++.
T Consensus 130 k~~~et~~nkrla~~Li~~W 149 (170)
T 3nfq_A 130 KSKRVEAQLARLAEKLIAEW 149 (170)
T ss_dssp HCTTSCHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHHHHHHHHHHH
Confidence 665 577999999999975
No 181
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=35.91 E-value=4.3e+02 Score=28.17 Aligned_cols=264 Identities=11% Similarity=0.105 Sum_probs=125.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHH----h------CCChHHHHHhhC-CCC-hHHHHHHHHHHHH
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLI----D------HGAVPIFVKLLA-SPS-DDVREQAVWALGN 134 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~------~~~i~~L~~~l~-~~~-~~~~~~a~~~L~~ 134 (449)
...|.+++... +.+....+.+|.++.- +++....+. + ...+|.+++++- +.+ .++++ ++..|+.
T Consensus 194 ~~~L~~lL~~~--~~L~~~iLdaLs~L~L-s~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~e-vI~~LR~ 269 (1323)
T 3s4w_B 194 GKELGELLVQN--TSLTVPILDVFSSLRL-DPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLE-VIAELRE 269 (1323)
T ss_dssp HHHHHHHHHHC--STTHHHHHHHHHHSCC-CHHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHH-HHHHHHH
T ss_pred HHHHHHHHhcC--cchHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHH-HHHHHHH
Confidence 45566676663 3677888889998887 454443332 2 245888888762 222 22222 3333332
Q ss_pred HhcC-C---Cc----hhhhHh----------hcC----CHHHHHHHHcc--cccHHHHHHHHHHHHHhhcCCCCCChhhh
Q 039940 135 IVAH-S---PG----CRNLVL----------HEE----ALIPLLAQLNE--HARLSMLRIGTWTLSNLCKGKPQPPFDQV 190 (449)
Q Consensus 135 l~~~-~---~~----~~~~~~----------~~~----~i~~l~~~l~~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 190 (449)
-... . |. ....+. ..+ ...-++..+.. .....+.+..+..+.+.......
T Consensus 270 ~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~h------ 343 (1323)
T 3s4w_B 270 NLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAEH------ 343 (1323)
T ss_dssp HHHCC----------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTTC------
T ss_pred HcCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCccccc------
Confidence 1111 0 00 000000 000 11113333321 12445555566666666554322
Q ss_pred hchHHHHHHhh-cCCCHHHHHHHHHHHHHcccCC---hhHHHHHHH------hCcHHHHH----HhhCCCCCcchhhHHH
Q 039940 191 RPVLPALAQLI-HLDDEEVLRNVCWTLSNLSDGT---NDKIQAVIE------AGVCGPLV----ELLGHPSPSVLIPALR 256 (449)
Q Consensus 191 ~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~---~~~~~~~~~------~~~~~~L~----~ll~~~~~~v~~~a~~ 256 (449)
..++.++-++ .+.+...+..+-.++.+-.... .......+. ...++.++ .++.+.++.++.-+..
T Consensus 344 -k~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~ 422 (1323)
T 3s4w_B 344 -KSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSL 422 (1323)
T ss_dssp -CTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred -chhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 2333333222 2334444555555555544331 111111111 14445444 3456677777777777
Q ss_pred HHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHH
Q 039940 257 TVGNIVTGDDFQTQCVINHGAVPYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIK 336 (449)
Q Consensus 257 ~l~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~ 336 (449)
....+-...+...+ ..++..|+..+-++ ...-...|..+|..++..++........ .+..+++.+.+=+..-.
T Consensus 423 lY~~lF~~fd~~~q----qeVl~~Lv~hi~sg-~~~eVd~ALdvL~~L~~~~~~~l~~~a~--~l~giLD~l~~l~~~Qi 495 (1323)
T 3s4w_B 423 LYKYAFKFFDTYCQ----QEVVGALVTHVCSG-TEAEVDTALDVLLELIVLNASAMRLNAA--FVKGILDYLENMSPQQI 495 (1323)
T ss_dssp HHHHHHHSSCHHHH----HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHCHHHHHHTHH--HHHGGGGGGGGCCHHHH
T ss_pred HHHHHHHhccchhH----HHHHHHHHhhhcCC-CcHHHHHHHHHHHHHHhcCHHHHhHHHH--HHHHHHHhhcCCCHHHH
Confidence 66666544443222 23566777776666 4444555888888888766554433221 23333444444344444
Q ss_pred HHHHHHHHHhhc
Q 039940 337 KEAAWAISNATK 348 (449)
Q Consensus 337 ~~a~~aL~~l~~ 348 (449)
......|+.++.
T Consensus 496 Rklf~iL~~laf 507 (1323)
T 3s4w_B 496 RKIFCILSTLAF 507 (1323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 445666666654
No 182
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=34.86 E-value=1.5e+02 Score=23.56 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=66.0
Q ss_pred CChHHHHHhhCC------CChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHccc--ccHHHHHHHHHHHHHhh
Q 039940 108 GAVPIFVKLLAS------PSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNEH--ARLSMLRIGTWTLSNLC 179 (449)
Q Consensus 108 ~~i~~L~~~l~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~~a~~~l~~l~ 179 (449)
..+|.++.++.+ .+.......+.....+.....-. -.-.-...++.++.++-.. ....+++.|+..+..++
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~-lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVF-IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCC-CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 456777766642 45555566666666665433211 1111223567777776322 12279999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHcc
Q 039940 180 KGKPQPPFDQVRPVLPALAQLIHLD--DEEVLRNVCWTLSNLS 220 (449)
Q Consensus 180 ~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~ 220 (449)
.............+...+.+.+.++ ......-|+..|..+.
T Consensus 119 ~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 119 DTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 8764444444566677777666544 3455555666666554
No 183
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=29.36 E-value=2.4e+02 Score=28.19 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=67.5
Q ss_pred ChHHHHHhhCCCChHHHHHHHHHHHHHhcCCCchhhhHhhcCCHHHHHHHHcc--cccHHHHHHHHHHHHHhhcCCCC--
Q 039940 109 AVPIFVKLLASPSDDVREQAVWALGNIVAHSPGCRNLVLHEEALIPLLAQLNE--HARLSMLRIGTWTLSNLCKGKPQ-- 184 (449)
Q Consensus 109 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~~~~~a~~~l~~l~~~~~~-- 184 (449)
+.|.+...+.+.+..+...+..++.++|.-.|.+.+.+. .+++..+-..|.. -..+.-...++.++..++..-..
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVl-P~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIY-DKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHH-HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceeh-HHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 356666667788999999999999999998885555553 2334444444423 24455455566666655543211
Q ss_pred CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHcc
Q 039940 185 PPFDQVRPVLPALAQLIHLDDEEVLRNVCWTLSNLS 220 (449)
Q Consensus 185 ~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 220 (449)
.-......++..++.-++.+|+.--..++..+..++
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 111233455566666667778776666666666654
No 184
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=27.41 E-value=2.2e+02 Score=22.18 Aligned_cols=67 Identities=13% Similarity=0.219 Sum_probs=39.0
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcC------c--hhHHHHHHHHHHHhhc
Q 039940 279 PYLLALLINNHKKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDA------E--FDIKKEAAWAISNATK 348 (449)
Q Consensus 279 ~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~------~--~~v~~~a~~aL~~l~~ 348 (449)
..|..+++...+..+..+-...+. +.+...+..++..|++..|+.+.... + .+--+.+|..|.....
T Consensus 69 kyladllktrddmdllnemvvvfr---sssvsfiktfvsvgglanlmaiykkkieaensntaideerkccevlryvfa 143 (353)
T 4dvg_B 69 KYLADLLKTRDDMDLLNEMVVVFR---SSSVSFIKTFVSVGGLANLMAIYKKKIEAENSNTAIDEERKCCEVLRYVFA 143 (353)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHH---HSCHHHHHHHHHTSTHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccchHHHhhhheEEEe---ccchhHHHHHhhhccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHh
Confidence 456667766535555554433333 34667777888888888888776432 1 1223445666665544
No 185
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=21.64 E-value=1.2e+02 Score=17.13 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhcCCChhhhHHHH
Q 039940 67 VPRFVEFLLREDYPRLQFEAAWVLTNIASGTSVNTKVLI 105 (449)
Q Consensus 67 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 105 (449)
+..|++.|++++.++-+.+++.+|. .+|.-...++
T Consensus 3 LqqLl~tlksp~sp~qqqqvl~ILk----snPqLMAAfI 37 (47)
T 1zoq_C 3 LQDLLRTLKSPSSPQQQQQVLNILK----SNPQLMAAFI 37 (47)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHH----TCHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH----cCHHHHHHHH
Confidence 5667888888887788877776664 2555444443
No 186
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=20.59 E-value=2.6e+02 Score=20.66 Aligned_cols=89 Identities=12% Similarity=0.013 Sum_probs=58.2
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHhhcCchhHHHHHHHHHHHhhccCCHHHHHHHHHcCChHHHHh
Q 039940 290 KKSIKKESCWTVSNITAGNRKQIQAVIDAGLIVPLVNLLQDAEFDIKKEAAWAISNATKAGTQEQIKYLVREGCIKPLCD 369 (449)
Q Consensus 290 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ 369 (449)
.+.+..-..|++-|.- ... .++..+.+-+....+.-+..+++.+-.++.....+.. ..+..++.+.+.+
T Consensus 24 k~~I~~LT~~a~~~~~-----~a~-----~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~-~~F~~~l~~~f~~ 92 (144)
T 1sz9_A 24 RPIITTLTKLAEENIS-----CAQ-----YFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYT-IYFSRNLFNLYKR 92 (144)
T ss_dssp HHHHHHHHHHHHHTGG-----GHH-----HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHH-HHHHTTHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHHH
Confidence 4455555555555442 111 2344555666667888999999999999987555543 4456677888888
Q ss_pred hccCCCHHHHHHHHHHHHHH
Q 039940 370 LLLCADPEIVTVCLKGLENI 389 (449)
Q Consensus 370 ll~~~~~~~~~~~~~~l~~l 389 (449)
.....|+..+.+...++...
T Consensus 93 ~~~~~d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 93 TYLLVDNTTRTKLINMFKLW 112 (144)
T ss_dssp HHHTSCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 87777888887777655433
Done!