Query 039943
Match_columns 581
No_of_seqs 205 out of 2279
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 05:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 2.3E-30 7.7E-35 279.2 29.6 446 21-563 8-478 (491)
2 2xut_A Proton/peptide symporte 100.0 2.5E-30 8.7E-35 281.3 25.1 472 23-566 9-512 (524)
3 4gc0_A D-xylose-proton symport 100.0 9.8E-28 3.4E-32 258.4 24.4 420 60-578 53-484 (491)
4 1pw4_A Glycerol-3-phosphate tr 100.0 2.2E-27 7.7E-32 252.3 22.8 397 25-559 27-436 (451)
5 3o7q_A L-fucose-proton symport 99.9 5.1E-25 1.8E-29 233.3 29.7 177 22-230 22-227 (438)
6 2gfp_A EMRD, multidrug resista 99.9 2.5E-22 8.7E-27 208.4 16.8 166 30-227 4-169 (375)
7 2cfq_A Lactose permease; trans 99.9 3.5E-22 1.2E-26 211.0 12.7 387 26-559 7-402 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 3.5E-13 1.2E-17 142.5 17.4 177 26-231 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 2.6E-12 8.9E-17 135.3 18.1 168 26-227 258-427 (438)
10 2cfq_A Lactose permease; trans 99.4 3.4E-12 1.2E-16 134.3 14.2 174 28-232 222-399 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 1.2E-10 4.3E-15 124.6 14.5 185 27-234 284-473 (491)
12 4gc0_A D-xylose-proton symport 99.0 1.4E-08 4.7E-13 108.5 20.3 179 31-235 281-465 (491)
13 2gfp_A EMRD, multidrug resista 98.9 4.6E-10 1.6E-14 115.7 3.3 162 27-220 200-364 (375)
14 2xut_A Proton/peptide symporte 98.2 7.9E-07 2.7E-11 95.7 4.6 150 63-234 336-504 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=2.3e-30 Score=279.23 Aligned_cols=446 Identities=16% Similarity=0.222 Sum_probs=290.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhh-----cCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhh
Q 039943 21 PKGGLRTLPFIIANEAFERMASMGLMPNMILYLCGE-----YNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPM 95 (581)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~ 95 (581)
.++++|.++.+.+..++..+++|++..+++.|++++ +|++..+.+++.+++.++..++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~ 87 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA 87 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 345677888888999999999999999999999988 999999999999999999999999999999992299999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcc
Q 039943 96 IGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENK 175 (581)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (581)
+..+.++..++.+++++++ +.+.++++|++.|++.+...+...++++|++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 141 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD--- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT---
T ss_pred HHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc---
Confidence 9999999999999998877 67789999999999999999999999999999855
Q ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCccccc---CCCC-ChhhhHHH
Q 039943 176 SKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQS---KANT-SLLTGLIQ 251 (581)
Q Consensus 176 ~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ 251 (581)
+.|+.++++++.+.++|..++|.+++++.+..||++.|++.++..+++.+...+..++..++ +++. ...++..+
T Consensus 142 --~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
T 4aps_A 142 --RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP 219 (491)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred --ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence 45888999999999999999999999999999999999998877766665554433222111 1111 11111111
Q ss_pred HHHH--------------HHhhccccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCcc
Q 039943 252 VLVA--------------SYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLC 317 (581)
Q Consensus 252 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (581)
.... .....+.+.. +...... .........+. ....++.
T Consensus 220 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~--~~~~~~~----------------- 272 (491)
T 4aps_A 220 LLVKVSLAVAGFIAIIVVMNLVGWNSLP--AYINLLT------IVAIAIPVFYF--AWMISSV----------------- 272 (491)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHSSCCTT--HHHHHHH------HHHHHHHHHHH--HHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccc--cchhhhh------HHHHHHHHHHH--HHHhhcc-----------------
Confidence 0000 0000000000 0000000 00000000000 0000000
Q ss_pred chhhHHHHHhHHhhHhHHHhhHHHHHhhcC-CChh-heecccCCCCCCCCcccCcccccchhhHHHHHHhhhccchhhhH
Q 039943 318 TVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFP-VLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRILQPI 395 (581)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (581)
.....++++......+++....++..+.+ .... .+.....+... ...........+..++..++.+ ++
T Consensus 273 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~l 342 (491)
T 4aps_A 273 -KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSLNPLFIMLYTPFFA----WL 342 (491)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTHHHHHHHHHHHHHH----HH
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhccchHHHHHHHHHHH----HH
Confidence 00001223333333344444444554544 2221 11111111111 2233444555555555555544 46
Q ss_pred hhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhh
Q 039943 396 ASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQ 475 (581)
Q Consensus 396 ~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 475 (581)
.+|+++|+ ....+.+..+.++.++++++........ +.....+.++..+.+++.+++.+...+..
T Consensus 343 ~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 407 (491)
T 4aps_A 343 WTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY-------------GTSGKVSPLWLVGSWALVILGEMLISPVG 407 (491)
T ss_dssp HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC-------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc-------------CCCCCccHHHHHHHHHHHHHHHHHHhHHH
Confidence 77877774 4556667788888888877665543210 00112356677778889999999999999
Q ss_pred heeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 039943 476 IEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLA 555 (581)
Q Consensus 476 ~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~ 555 (581)
+.++.+.+|++.||+++|+.+....+|+.+++.+.+.+.+. ++...|.+++++++++.+++++
T Consensus 408 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 408 LSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877642 2356788888888888888888
Q ss_pred hhcccccc
Q 039943 556 CCKAYGPC 563 (581)
Q Consensus 556 ~~~~~~~~ 563 (581)
+.++.+++
T Consensus 471 ~~~~~~~~ 478 (491)
T 4aps_A 471 LSKRIQGL 478 (491)
T ss_dssp C-------
T ss_pred HHHHHHHH
Confidence 77765554
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=2.5e-30 Score=281.27 Aligned_cols=472 Identities=20% Similarity=0.320 Sum_probs=284.2
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcC------CcchhhHHHHHHHHHHHHHHHHHHHHhhcccc-Cchhh
Q 039943 23 GGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYN------METTAGTNVLLIWTAATNFLPIIGAFLADSCV-GRYPM 95 (581)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~-Grr~~ 95 (581)
+++|.++.+.+..++..+++|++..+++.|+++++| ++..+.+++.+++.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~ 87 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT 87 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence 345566778888999999999999999999999999 999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcc
Q 039943 96 IGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENK 175 (581)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (581)
+.++.++..++.++++++. .+.+.+++.|++.|++.+...+...++++|++|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r-- 143 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK-- 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT--
T ss_pred HHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch--
Confidence 9999999999998888764 0467788999999999999999999999999998442
Q ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHH
Q 039943 176 SKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVA 255 (581)
Q Consensus 176 ~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (581)
.++...+++++.+.++|..++|.+++++.+..||++.|++.+++.+++.+.+.+..++.+++++++++..+..+.+..
T Consensus 144 --~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (524)
T 2xut_A 144 --SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221 (524)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence 223455666889999999999999999998899999999988877766665554444332222222111111111111
Q ss_pred HHhhccccccCcc--------ccccccCCCCCcc--c-----------cCCcchhh--hhhhhhccCCCCCCCCCCCCCC
Q 039943 256 SYKNRHIKLSSQT--------TEEMYHPRKGSML--L-----------VPSENLRC--LNKACIIKHPGQDSTPDRRASN 312 (581)
Q Consensus 256 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~-----------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 312 (581)
..++++.+.+... ............. . +...+..+ .+..+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 286 (524)
T 2xut_A 222 ALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKS--------------- 286 (524)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCS---------------
T ss_pred HHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhcc---------------
Confidence 1111100000000 0000000000000 0 00000000 0000000
Q ss_pred CCCccchhhHHHHHhHHhhHhHHHhhHHHHHhhcC-CChhheecccCCCCCCCCcccCcccccchhhHHHHHHhhhccch
Q 039943 313 PWSLCTVDQVEELKALIKVIPLWSTGIMIAVTISQ-SSFPVLQASTMDRHITPNFEIPSGSFGIFTIITVILWIGFYDRI 391 (581)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (581)
......++.++......++.....++..+.+ .+.+..+....+... + .+...+...+.+..++..++.+++
T Consensus 287 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~ 358 (524)
T 2xut_A 287 ----HPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFV 358 (524)
T ss_dssp ----CCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC
T ss_pred ----ccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhh
Confidence 0000011233344444444444555555555 444444333222211 1 123344455566667777888877
Q ss_pred hhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 039943 392 LQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFN 471 (581)
Q Consensus 392 ~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 471 (581)
..+..+|.++| .+..+.+.+|.++.++++++........ ......+.+++++.+++.+++++..
T Consensus 359 ~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~g~~~~~~ 422 (524)
T 2xut_A 359 LYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM-------------DGGSALSIFWQILPYALLTFGEVLV 422 (524)
T ss_dssp ---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-------------TTTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-------------cCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 66666776555 5666777888888877776554321000 0001235566777889999999999
Q ss_pred hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCC-CCCCchhHHHHHHHHHHHHHHH
Q 039943 472 MIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIPS-NINKGRYDYYYWLLAGLNMASF 550 (581)
Q Consensus 472 ~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~a~~~~~~~ 550 (581)
.+..++++.+.+|++.||+++|+.++...+|+.+++.+.+.+.+..+. +|.+. +. +.....|++.+++++++.
T Consensus 423 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~ 496 (524)
T 2xut_A 423 SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVT----EQIVQTGM--SVTAFQMFFFAGFAILAA 496 (524)
T ss_dssp HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHH----HHHHHHHS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccc----cccccccc--cccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988753210 23210 00 001233778888888888
Q ss_pred HHHhhhhccccccccc
Q 039943 551 IYFLACCKAYGPCREE 566 (581)
Q Consensus 551 ~~~~~~~~~~~~~~~~ 566 (581)
++++++.+++++++.+
T Consensus 497 ~~~~~~~~~~~~~~~~ 512 (524)
T 2xut_A 497 IVFALYARSYQMQDHY 512 (524)
T ss_dssp HHHC------------
T ss_pred HHHHHHHHHhccchhh
Confidence 8888877776655443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=9.8e-28 Score=258.44 Aligned_cols=420 Identities=10% Similarity=0.026 Sum_probs=234.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccccchhH
Q 039943 60 ETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQL 139 (581)
Q Consensus 60 s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (581)
+..+.+++.+++.++..++++++|+++|| +|||++++++.+++.++.++++++......... .......-..++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-----~~~~~~~~a~~~ 126 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINP-----DNTVPVYLAGYV 126 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-----SSSCCGGGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----hhHHHHHHhhhH
Confidence 34567899999999999999999999999 799999999999999999999864311000000 000000012278
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhcc--------ccc
Q 039943 140 MLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDN--------LGW 211 (581)
Q Consensus 140 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~--------~g~ 211 (581)
+.++++|+++|+|.|+..+..+++++|..|+ ++|++..++.+.+..+|..+++.++..+... .+|
T Consensus 127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 8999999999999999999999999999998 7899999999999999999998877665432 347
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCC--cccccCCCCChhhhHHHHHHHHHhhccccccCccccccccCCCCCccccCCcchh
Q 039943 212 KVGFGVPAVISLLSALSFFLASP--FYVQSKANTSLLTGLIQVLVASYKNRHIKLSSQTTEEMYHPRKGSMLLVPSENLR 289 (581)
Q Consensus 212 ~~~f~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (581)
++.+.+..+..++.++.....++ ++...+.+.+... +.+.....+...+.. . .+...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~---~~l~~~~~~~~~~~~------~------------~~~~~ 258 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAE---GILRKIMGNTLATQA------V------------QEIKH 258 (491)
T ss_dssp HHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHH---HHHHHHHHHHHHHHH------H------------HHHHH
T ss_pred HHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHH---HhHHHhcCCchhHHH------H------------HHHHH
Confidence 76666665554444433332221 1111111111111 111111110000000 0 00000
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHHH-HhhcC-CChhheecccCCCCCCCCcc
Q 039943 290 CLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMIA-VTISQ-SSFPVLQASTMDRHITPNFE 367 (581)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~ 367 (581)
.....+.. .. .......++.........++.... ..... .+.. .+....+.
T Consensus 259 ~~~~~~~~--------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------- 311 (491)
T 4gc0_A 259 SLDHGRKT--------------GG-----RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV-FKTLGAST------- 311 (491)
T ss_dssp HHHHHHHH--------------TT-----HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSSCCH-------
T ss_pred HHHhhhhh--------------hh-----HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHH-HHhcCCCc-------
Confidence 00000000 00 000000111111111111111000 00000 1111 11000000
Q ss_pred cCcccccchhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 039943 368 IPSGSFGIFTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLLFSTASMAAWAITETVRRNIAINEGISDDPR 447 (581)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 447 (581)
...........+..++. ..+...+.||+||| +.+..+...++++++..+.....
T Consensus 312 ~~~~~~~~~~~~~~~~~----~~~~~~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~~--------------- 365 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTF----TVLAIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT--------------- 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred cchhhHHHHHHHHHHHH----HHHHHHHHHhhcCc-------chhccchHHHHHHHHHHHHHHhc---------------
Confidence 00001111111122222 22344577887777 46667777777666655543320
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCcC
Q 039943 448 AVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASALHGLGMSVASLVASFIMNAVDEITKRGGKEGWIP 527 (581)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~ 527 (581)
.......++...++.........|..+.+..|.+|.+.|++++|+.+.++++++++++.+.|.+.+.....
T Consensus 366 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~------- 436 (491)
T 4gc0_A 366 --QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV------- 436 (491)
T ss_dssp --TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH-------
T ss_pred --ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 01122222222222222233345667788999999999999999999999999999999888776532100
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhhhccCcc
Q 039943 528 SNINKGRYDYYYWLLAGLNMASFIYFLACCKAYGPCREEASEALDEKDGME 578 (581)
Q Consensus 528 ~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (581)
...+....|++++++++++.++.+++.||+|+|+.||.|++++++..+
T Consensus 437 ---~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~ 484 (491)
T 4gc0_A 437 ---AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKK 484 (491)
T ss_dssp ---HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-----
T ss_pred ---hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcc
Confidence 000124468899999999999999999999999999999998765444
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=2.2e-27 Score=252.34 Aligned_cols=397 Identities=11% Similarity=0.004 Sum_probs=250.2
Q ss_pred CchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943 25 LRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL 104 (581)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~ 104 (581)
++.++...+..++..+..+.+.+.++. +.+++ .+..+.+++.+++.++..++.++.|+++|| +|||+++.++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPY-LVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHH-TTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHH
Confidence 344455555666666666655666654 44577 999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHH----hhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhh
Q 039943 105 LGVVLLWL----TTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGAL 180 (581)
Q Consensus 105 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r 180 (581)
++.+++++ +. +++.++++|++.|++.+...+...++++|.+|+ ++|
T Consensus 104 ~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KER 153 (451)
T ss_dssp HHHHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THH
T ss_pred HHHHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhh
Confidence 99999998 66 677899999999999999999999999999998 679
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhh
Q 039943 181 QSYFSWYYVSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKN 259 (581)
Q Consensus 181 ~~~~~~~~~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (581)
++++++.+.+.++|..++|.+++++.+..| |++.|++.+++.++..+...+..++.++.+...+. +
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------ 220 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------ 220 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h------------
Confidence 999999999999999999999999888888 99999998887766555443333321111100000 0
Q ss_pred ccccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhH-HHhh
Q 039943 260 RHIKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPL-WSTG 338 (581)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 338 (581)
. ..+ . .+.+. . . +++ ...+++..........+.+...... +...
T Consensus 221 -~--~~~-~----~~~~~-------~-------~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (451)
T 1pw4_A 221 -E--YKN-D----YPDDY-------N-------E-----KAE--------QELTAKQIFMQYVLPNKLLWYIAIANVFVY 265 (451)
T ss_dssp -T--TCC-C--------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred -h--hcc-c----ccccc-------h-------h-----hhh--------cccccccchHHHHHcCHHHHHHHHHHHHHH
Confidence 0 000 0 00000 0 0 000 0001100000000001111111111 1111
Q ss_pred HHHHHhhcCCChhheecccCCCCCCCCcccCcccccc---hhhHHHHHHhhhccchhhhHhhhh--cCCCCCCCchHHHH
Q 039943 339 IMIAVTISQSSFPVLQASTMDRHITPNFEIPSGSFGI---FTIITVILWIGFYDRILQPIASKI--RGKPCQLRLKQRMG 413 (581)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~--~~r~~~~~~~~~~~ 413 (581)
..........+.++.+ ..+ .+....+. ...+..++..+ +..++.+|+ ++| +.+.
T Consensus 266 ~~~~~~~~~~~~~~~~------~~g----~~~~~~~~~~~~~~~~~~~~~~----~~g~l~~~~~~~~~-------~~~~ 324 (451)
T 1pw4_A 266 LLRYGILDWSPTYLKE------VKH----FALDKSSWAYFLYEYAGIPGTL----LCGWMSDKVFRGNR-------GATG 324 (451)
T ss_dssp HHHHHHHHHHHHHBTT------BSC----CCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTSTTCH-------HHHH
T ss_pred HHHHHHHHHHHHHHHH------hcC----CCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCc-------hhHH
Confidence 1111111112222211 111 12211121 22222222222 334466665 333 4454
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHH
Q 039943 414 IGLLFST-ASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIAS 492 (581)
Q Consensus 414 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~ 492 (581)
++.++.. ++++.+... ...+.+......++.+++.....+....++.+.+|++.|+++.
T Consensus 325 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 384 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMN--------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 384 (451)
T ss_dssp HHHHHHHHHHHHHTTSC--------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHH
Confidence 5544443 444333221 0124455566667777777777888888999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 039943 493 ALHGLGMSV-ASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKA 559 (581)
Q Consensus 493 g~~~~~~~i-g~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~ 559 (581)
|+.+....+ |..+++.+.+.+.+.. ++...|++.+++++++.++.++..++
T Consensus 385 ~~~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 385 GFTGLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 9999999999887642 24778888888888888777666543
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=5.1e-25 Score=233.31 Aligned_cols=177 Identities=13% Similarity=0.065 Sum_probs=146.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHH
Q 039943 22 KGGLRTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCI 101 (581)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~ 101 (581)
+++++.+..+.+..++..+......+.+ +++.+++|++..+.+++.+++.++..++.++.|+++|| +|||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHH
Confidence 3344445555555555655555444444 45778999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHH---HHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccch
Q 039943 102 TYLLGVVLL---WLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKG 178 (581)
Q Consensus 102 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (581)
+.+++.+++ .+++ +++.++++|++.|++.+...+...++++|.+|+ +
T Consensus 100 ~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~ 149 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM-----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------S 149 (438)
T ss_dssp HHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-------T
T ss_pred HHHHHHHHHHhccccc-----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-------h
Confidence 999999988 5555 788999999999999999999999999999998 6
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHhhh-cccc-------------------------chhhhHHHHHHHHHHHHHHH
Q 039943 179 ALQSYFSWYYVSVLASSMVAVTCIVYIQ-DNLG-------------------------WKVGFGVPAVISLLSALSFF 230 (581)
Q Consensus 179 ~r~~~~~~~~~~~~~g~~~~p~~~~~i~-~~~g-------------------------~~~~f~~~~~~~~i~~~~~~ 230 (581)
+|++.+++.+.+.++|..++|.+++++. +..+ |++.|++.+++.++..+..+
T Consensus 150 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999988 5544 89999877766555444433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=2.5e-22 Score=208.39 Aligned_cols=166 Identities=17% Similarity=0.228 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHH
Q 039943 30 FIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVL 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~ 109 (581)
.+.+..++..+......+.++. +.+++|.+..+.+++.+++.++..++.++.|+++|| +|||+++..+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHH
Confidence 3445555666665555666655 457899999999999999999999999999999999 79999999999999999999
Q ss_pred HHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHH
Q 039943 110 LWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYV 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (581)
+.+++ +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.+++.+.
T Consensus 82 ~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 131 (375)
T 2gfp_A 82 AVTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-------TQLRHANSLLNM 131 (375)
T ss_dssp HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSCCSHHHHHHH
T ss_pred HHHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-------HHHHHHHHHHHH
Confidence 99987 788899999999999999999999999999998 569999999999
Q ss_pred HHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHH
Q 039943 190 SVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSAL 227 (581)
Q Consensus 190 ~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~ 227 (581)
..++|..++|.+++++.+..||++.|++.++..++..+
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999987776555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=3.5e-22 Score=211.01 Aligned_cols=387 Identities=10% Similarity=0.019 Sum_probs=217.3
Q ss_pred chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHH
Q 039943 26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLL 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~ 105 (581)
|..+...+..++..+.+....++++.|+++++|++..+.+++.+++.++..++++++|+++|| +||||+++++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence 445555565666666666778899999998999999999999999999999999999999999 7999999998877655
Q ss_pred HHHHH---HHhhhcccCCCCcccccccccccccchhH-HHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhh
Q 039943 106 GVVLL---WLTTILSQAQPPACDQLRSDCESATWSQL-MLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ 181 (581)
Q Consensus 106 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 181 (581)
+...+ .++. .. ..++..+++.+++.+...+.......+..++.. ++++
T Consensus 86 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~ 137 (417)
T 2cfq_A 86 MFAPFFIFIFGP-----------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSN 137 (417)
T ss_dssp CHHHHHHHTHHH-----------------------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-----HHHT
T ss_pred HHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-----hhcc
Confidence 32211 1221 00 012334555555544444444444444433211 3456
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCCcccccCCCCChhhhHHHHHHHHHhhcc
Q 039943 182 SYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASPFYVQSKANTSLLTGLIQVLVASYKNRH 261 (581)
Q Consensus 182 ~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (581)
..++..+...++|..++|.+++++.+ .+|++.|++.++..++..+......+ ++++..+
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~----~~~~~~~---------------- 196 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKT----DAPSSAT---------------- 196 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCC----CCSCSSC----------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCc----ccccccc----------------
Confidence 66777777788999999999999876 58999998776654333322221111 1110000
Q ss_pred ccccCccccccccCCCCCccccCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCccchhhHHHHHhHHhhHhHHHhhHHH
Q 039943 262 IKLSSQTTEEMYHPRKGSMLLVPSENLRCLNKACIIKHPGQDSTPDRRASNPWSLCTVDQVEELKALIKVIPLWSTGIMI 341 (581)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (581)
..+ . + +. + .+ +.+++. .......+...............
T Consensus 197 --~~~-~-~---~~-~-------~~------------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T 2cfq_A 197 --VAN-A-V---GA-N-------HS------------------------AFSLKL--ALELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp --SSS-S-S---SS-C-------CC------------------------CCCHHH--HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --ccc-c-c---cc-c-------cc------------------------cccHHH--HHHHhcCCchhhHHHHHHHHHHH
Confidence 000 0 0 00 0 00 000000 00000011111111111111111
Q ss_pred HHhhcC-CChhheecccCCCCCCCCcccCcccccc---hhhHHHHHHhhhccchhhhHhhhhcCCCCCCCchHHHHHHHH
Q 039943 342 AVTISQ-SSFPVLQASTMDRHITPNFEIPSGSFGI---FTIITVILWIGFYDRILQPIASKIRGKPCQLRLKQRMGIGLL 417 (581)
Q Consensus 342 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~ 417 (581)
+..+.+ .+.++.+ ..... .......+. ++.+..++. ..+..++.||+++| +.+..+.+
T Consensus 236 ~~~~~~~~~~~~~~--~~~~~-----~~~~~~~g~~~~~~~~~~~~~----~~~~g~l~dr~g~~-------~~l~~~~~ 297 (417)
T 2cfq_A 236 YDVFDQQFANFFTS--FFATG-----EQGTRVFGYVTTMGELLNASI----MFFAPLIINRIGGK-------NALLLAGT 297 (417)
T ss_dssp HHHHHHHHHHHHHH--TSSSH-----HHHTHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHhcc-----CCChhHHHHHHHHHHHHHHHH----HHHHHHHHHHhcHH-------HHHHHHHH
Confidence 111222 2222211 11100 001111111 111111222 22344567776554 45666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHH-HH
Q 039943 418 FSTASMAAWAITETVRRNIAINEGISDDPRAVVKMSAMWVLPYHVLSGLAMAFNMIGQIEFYYSELPRSMSSIASAL-HG 496 (581)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~ 496 (581)
+.+++++.... ..+.+.++...++.+++.....+..+.++.|..|++.||++.++ .+
T Consensus 298 ~~~~~~~~~~~----------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 355 (417)
T 2cfq_A 298 IMSVRIIGSSF----------------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC 355 (417)
T ss_dssp HHHHHHHHHTT----------------------CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----------------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 66665544322 11333444444555666666666677889999999999999998 48
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCCCCcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 039943 497 LGMSVASLVASFIMNAVDEITKRGGKEGWIPSNINKGRYDYYYWLLAGLNMASFIYFLACCKA 559 (581)
Q Consensus 497 ~~~~ig~~i~~~i~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~ 559 (581)
..+.+|+++++.+.+.+.+.. ++...|.+.+++++++.+..++..++
T Consensus 356 ~~~~lg~~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 356 FFKQLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp TTHHHHHHHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHhHHHHHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 888999999999999887632 35677888888888888776666554
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.49 E-value=3.5e-13 Score=142.53 Aligned_cols=177 Identities=16% Similarity=0.167 Sum_probs=150.2
Q ss_pred chHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccc--CchhhHHHHHHHH
Q 039943 26 RTLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCV--GRYPMIGFGCITY 103 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~--Grr~~~~~~~~~~ 103 (581)
|.++...+..++..+.++++..+++.|+++.+|++..+.+++.+...++..++.++.|+++|| + |||+.+..+.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 456677777788888888999999999998899999999999999999999999999999999 8 9999988887766
Q ss_pred H-HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhH
Q 039943 104 L-LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQS 182 (581)
Q Consensus 104 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 182 (581)
. ++.+++.+.. +.+.+.+++..++.|++.+...+...+++.|.+|+ +.|++
T Consensus 331 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGT 382 (451)
T ss_dssp HHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHH
T ss_pred HHHHHHHHHHhc---------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------hhhhh
Confidence 6 5555554432 11456677778889999888888889999999998 67999
Q ss_pred HHHHHHHHHhh-HHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh
Q 039943 183 YFSWYYVSVLA-SSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFL 231 (581)
Q Consensus 183 ~~~~~~~~~~~-g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~ 231 (581)
++++.+...++ |..++|.+.|++.+..||+..|++.+++.+++.+..++
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999988877776655544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.43 E-value=2.6e-12 Score=135.34 Aligned_cols=168 Identities=13% Similarity=0.045 Sum_probs=138.4
Q ss_pred chHHHHHHHHHHHHHHHhhhhhHHHHH-hhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943 26 RTLPFIIANEAFERMASMGLMPNMILY-LCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL 104 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~ 104 (581)
|.++...+..++.....+++..+++.| +++.+|++..+++++.+++.++..++.++.|+++|| +|||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 455666666777777788888999999 888889999999999999999999999999999999 799999999998888
Q ss_pred HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943 105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (581)
++.++..+.+ +...+ ...++.|++.+...|...++..|.+|+ + ++.+.
T Consensus 337 ~~~~~~~~~~-----------------------~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~-~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG-----------------------GHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQ-------D-TKYGS 384 (438)
T ss_dssp HHHHHHHHCC-----------------------HHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGG-------G-HHHHH
T ss_pred HHHHHHHHcC-----------------------CcHHH-HHHHHHHHHHHHHHHHHHHHHHhhccc-------c-ccchh
Confidence 8887777765 33333 334788899999999999999999886 3 66666
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhcccc-chhhhHHHHHHHHHHHH
Q 039943 185 SWYYVSVLASSMVAVTCIVYIQDNLG-WKVGFGVPAVISLLSAL 227 (581)
Q Consensus 185 ~~~~~~~~~g~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~i~~~ 227 (581)
++.. ...+|..++|.+.|++.+..| ++..|++.+++.++..+
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 6655 567999999999999999988 99999987665554443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.37 E-value=3.4e-12 Score=134.26 Aligned_cols=174 Identities=7% Similarity=-0.015 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCC---cchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHH
Q 039943 28 LPFIIANEAFERMASMGLMPNMILYLCGEYNM---ETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYL 104 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~ 104 (581)
++...+..+.....++....++|.|+.+.++. +..+.++..++..++..++.++.|+++|| +|||+++..+.++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHH
Confidence 33333333333444445556688888766553 34555777777788888999999999999 799999998888877
Q ss_pred HHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHH
Q 039943 105 LGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYF 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (581)
++.++.++.. +.+.+++...+.+++.+...+...++++|.+|+ +.|++++
T Consensus 301 ~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~ 350 (417)
T 2cfq_A 301 VRIIGSSFAT-----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIY 350 (417)
T ss_dssp HHHHHHTTCC-----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHH
T ss_pred HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHH
Confidence 7766665544 455566666777777777777778899999998 7799999
Q ss_pred HHH-HHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhc
Q 039943 185 SWY-YVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLA 232 (581)
Q Consensus 185 ~~~-~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~ 232 (581)
+.. +....+|..++|.++|++.+..|+...|.+.+++.+++.+..+..
T Consensus 351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 884 677789999999999999988889889988887777766554443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.19 E-value=1.2e-10 Score=124.57 Aligned_cols=185 Identities=10% Similarity=0.001 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHH-----HHHH
Q 039943 27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIG-----FGCI 101 (581)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~-----~~~~ 101 (581)
..+.+.+..++....+.....+++.|+.+.++.+..+.+++.+...++..++.++.|++.|| +|||+... .+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHH
Confidence 34555555666677777788889999998888887888889999999999999999999999 79987665 6666
Q ss_pred HHHHHHHHHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhh
Q 039943 102 TYLLGVVLLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQ 181 (581)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 181 (581)
+..++.+++.+...... ...+.+.+.+....++.|++.+...+...+++.|.+|+ +.|+
T Consensus 363 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------~~~g 421 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-------AFNS 421 (491)
T ss_dssp HHHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-------TCSS
T ss_pred HHHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------HHHH
Confidence 66666665555431100 00112456677788899999999999999999999998 6699
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHhcCC
Q 039943 182 SYFSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAVISLLSALSFFLASP 234 (581)
Q Consensus 182 ~~~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 234 (581)
++.++.+...++|..++|.+.+++.+ .++.+.|.+.+++.+++.+..++..+
T Consensus 422 ~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876 46777888777776666655555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.00 E-value=1.4e-08 Score=108.50 Aligned_cols=179 Identities=9% Similarity=0.073 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHHHHHHHHHH
Q 039943 31 IIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCITYLLGVVLL 110 (581)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~ 110 (581)
.....++..+..+....+..+++.+..+.+..+......+..+...++.++++++.|| +|||+.++.+.....++.+.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l 359 (491)
T 4gc0_A 281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSL 359 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHH
Confidence 3333334434333334444455666788888888888888889999999999999999 799999999988888877666
Q ss_pred HHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHH
Q 039943 111 WLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVS 190 (581)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 190 (581)
+...... .+..........+..+++. +..|..+.+.+|.+|. +.|+++.++.+..
T Consensus 360 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt-------~~R~~~~g~~~~~ 414 (491)
T 4gc0_A 360 GTAFYTQ-----------------APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPN-------AIRGKALAIAVAA 414 (491)
T ss_dssp HHHHHTT-----------------CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCT-------TTHHHHHHHHHHH
T ss_pred HHHHhcc-----------------cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCH-------hHHHHHHHHHHHH
Confidence 5543111 0111222222222223332 3446778999999999 6799999999999
Q ss_pred HhhHHHHHHHHHHhhhc------cccchhhhHHHHHHHHHHHHHHHhcCCc
Q 039943 191 VLASSMVAVTCIVYIQD------NLGWKVGFGVPAVISLLSALSFFLASPF 235 (581)
Q Consensus 191 ~~~g~~~~p~~~~~i~~------~~g~~~~f~~~~~~~~i~~~~~~~~~~~ 235 (581)
..+++.+++.+.+.+.+ ..++.+.|++.+++.+++.+..++..|+
T Consensus 415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 99999988877766543 2456667777777777776655555444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.89 E-value=4.6e-10 Score=115.70 Aligned_cols=162 Identities=8% Similarity=-0.058 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccCchhhHHHHHHH-HHH
Q 039943 27 TLPFIIANEAFERMASMGLMPNMILYLCGEYNMETTAGTNVLLIWTAATNFLPIIGAFLADSCVGRYPMIGFGCIT-YLL 105 (581)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~-~~~ 105 (581)
.++...+..++.....+++..++|.|+++.+|++..+.+++.+...++..++.++.|++.|| +|++ +..+... ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~~ 276 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHH
Confidence 35566666777777888888889999988899999999999999999999999999999999 6872 2233322 222
Q ss_pred HHH--HHHHhhhcccCCCCcccccccccccccchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHH
Q 039943 106 GVV--LLWLTTILSQAQPPACDQLRSDCESATWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSY 183 (581)
Q Consensus 106 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 183 (581)
+.. ...... +.+.+.+++..++.|++.+...+...+++.|.+|+ +|+++
T Consensus 277 ~~~~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--------~~g~~ 327 (375)
T 2gfp_A 277 GLLMWIPDWFG---------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPF--------LAGTA 327 (375)
T ss_dssp SSSSSHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHH--------HHHHH
T ss_pred HHHHHHHhhhc---------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCc--------ccchH
Confidence 222 122211 11556677788889999999999999999999872 49999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhccccchhhhHHHHH
Q 039943 184 FSWYYVSVLASSMVAVTCIVYIQDNLGWKVGFGVPAV 220 (581)
Q Consensus 184 ~~~~~~~~~~g~~~~p~~~~~i~~~~g~~~~f~~~~~ 220 (581)
.++.+...++|..++|.+.+.+.+..+|...+.+.++
T Consensus 328 ~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 328 GALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999999999999999887788877766443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.19 E-value=7.9e-07 Score=95.71 Aligned_cols=150 Identities=14% Similarity=0.159 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh----ccccCc----hhhHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Q 039943 63 AGTNVLLIWTAATNFLPIIGAFLA----DSCVGR----YPMIGFGCITYLLGVVLLWLTTILSQAQPPACDQLRSDCESA 134 (581)
Q Consensus 63 ~~~~i~~~~~~~~~i~~~~~G~la----Dr~~Gr----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (581)
..+++.....++..++.++.+++. || .|+ ++.+.++.++.+++.+++++..... +..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------------~~~ 400 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIER-MGVKLTALRKMGAGIAITGLSWIVVGTIQLMM--------------DGG 400 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT--------------TTT
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh--------------cCC
Confidence 355555555555556666666654 44 243 2456666666666666555432000 000
Q ss_pred cchhHHHHHHHHHHHHHhccccchhhhhhhhhccCCCCCcccchhhhHHHHHHHHHHhhHHHHHHHHHHhhhccc--cc-
Q 039943 135 TWSQLMLLYSALGLMSLGGGGIRSSSLAFGAEQLEKGDENKSKGALQSYFSWYYVSVLASSMVAVTCIVYIQDNL--GW- 211 (581)
Q Consensus 135 ~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~i~~~~--g~- 211 (581)
.+.+.+.++...++.|++.+...+...+++.|..|+ +.|+++.++.+...++|..++|.+.+.+.+.. +|
T Consensus 401 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~ 473 (524)
T 2xut_A 401 SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK-------AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQI 473 (524)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCT-------TCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 112456677788999999999999999999999998 66999999999999999999999999987642 23
Q ss_pred --------hhhhHHHHHHHHHHHHHHHhcCC
Q 039943 212 --------KVGFGVPAVISLLSALSFFLASP 234 (581)
Q Consensus 212 --------~~~f~~~~~~~~i~~~~~~~~~~ 234 (581)
+..|++.+.+.+++.+..++..+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 474 VQTGMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22366666655555554444333
Done!