Query 039944
Match_columns 348
No_of_seqs 164 out of 2139
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 1.7E-22 3.8E-27 207.8 20.4 248 28-317 610-908 (1153)
2 PLN03210 Resistant to P. syrin 99.9 7E-22 1.5E-26 203.4 18.9 284 3-316 631-944 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.7E-21 3.6E-26 199.4 17.3 128 101-232 166-293 (968)
4 PLN00113 leucine-rich repeat r 99.9 2.6E-21 5.7E-26 198.1 17.1 39 2-40 89-129 (968)
5 KOG4194 Membrane glycoprotein 99.8 2.3E-22 5.1E-27 181.4 0.6 309 1-346 97-454 (873)
6 KOG4194 Membrane glycoprotein 99.7 3.3E-19 7.1E-24 161.3 1.9 280 4-311 147-448 (873)
7 KOG0444 Cytoskeletal regulator 99.7 7.1E-20 1.5E-24 166.9 -4.3 278 3-316 75-376 (1255)
8 KOG0444 Cytoskeletal regulator 99.6 8.1E-18 1.7E-22 153.7 -5.0 260 5-294 102-377 (1255)
9 PRK15387 E3 ubiquitin-protein 99.6 9.1E-15 2E-19 141.9 15.5 245 8-313 203-456 (788)
10 KOG0472 Leucine-rich repeat pr 99.6 3.5E-18 7.6E-23 148.3 -7.7 254 28-314 182-540 (565)
11 PRK15387 E3 ubiquitin-protein 99.6 2.3E-14 5E-19 139.1 13.7 226 7-290 223-456 (788)
12 KOG0472 Leucine-rich repeat pr 99.6 1.5E-17 3.4E-22 144.4 -9.1 242 28-314 67-309 (565)
13 KOG0618 Serine/threonine phosp 99.5 7.7E-16 1.7E-20 146.4 -2.3 86 219-314 379-488 (1081)
14 PRK15370 E3 ubiquitin-protein 99.5 1.4E-13 3E-18 134.3 12.2 244 7-314 179-427 (754)
15 PRK15370 E3 ubiquitin-protein 99.4 4.3E-13 9.2E-18 131.0 7.8 224 6-290 199-426 (754)
16 KOG0617 Ras suppressor protein 99.4 8.5E-15 1.8E-19 113.5 -4.4 161 119-296 29-189 (264)
17 KOG4237 Extracellular matrix p 99.3 2.2E-14 4.8E-19 124.7 -5.6 86 218-313 269-357 (498)
18 KOG0617 Ras suppressor protein 99.3 1.3E-13 2.8E-18 107.0 -4.1 160 101-278 35-195 (264)
19 KOG0618 Serine/threonine phosp 99.2 4.2E-13 9.1E-18 128.1 -4.5 192 6-231 241-460 (1081)
20 KOG4341 F-box protein containi 99.2 5.3E-13 1.2E-17 117.0 -5.8 283 28-342 163-460 (483)
21 cd00116 LRR_RI Leucine-rich re 99.0 1.4E-11 3.1E-16 110.4 -2.5 132 98-232 81-230 (319)
22 cd00116 LRR_RI Leucine-rich re 99.0 1.9E-11 4.1E-16 109.6 -2.4 208 101-315 53-291 (319)
23 KOG4658 Apoptotic ATPase [Sign 99.0 3.6E-10 7.7E-15 112.4 5.1 62 2-74 567-629 (889)
24 KOG4658 Apoptotic ATPase [Sign 98.9 5.9E-10 1.3E-14 110.9 3.5 206 98-318 571-786 (889)
25 KOG4237 Extracellular matrix p 98.9 2.7E-11 5.8E-16 105.8 -5.8 283 18-345 57-360 (498)
26 KOG4341 F-box protein containi 98.9 3.7E-11 7.9E-16 105.6 -6.1 272 3-297 161-444 (483)
27 PRK15386 type III secretion pr 98.8 5.1E-08 1.1E-12 87.9 11.7 166 120-317 49-215 (426)
28 KOG0532 Leucine-rich repeat (L 98.8 2.7E-10 5.8E-15 103.9 -2.8 189 102-312 78-270 (722)
29 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.6E-14 96.8 1.0 210 59-288 119-335 (505)
30 KOG1259 Nischarin, modulator o 98.5 1.4E-08 3.1E-13 86.1 0.2 125 170-313 283-410 (490)
31 KOG3207 Beta-tubulin folding c 98.5 1.2E-08 2.5E-13 90.7 -0.5 175 101-290 123-312 (505)
32 PRK15386 type III secretion pr 98.5 1.1E-06 2.3E-11 79.5 10.0 135 146-312 51-187 (426)
33 PF14580 LRR_9: Leucine-rich r 98.5 7.1E-08 1.5E-12 77.6 2.1 104 170-290 18-124 (175)
34 COG4886 Leucine-rich repeat (L 98.4 1.6E-07 3.5E-12 86.9 4.4 169 101-289 118-287 (394)
35 COG4886 Leucine-rich repeat (L 98.4 3.1E-07 6.8E-12 85.0 5.4 191 103-313 97-288 (394)
36 KOG1259 Nischarin, modulator o 98.4 9.9E-08 2.1E-12 81.1 1.6 137 119-273 280-416 (490)
37 KOG0532 Leucine-rich repeat (L 98.3 4.2E-08 9.1E-13 89.9 -2.0 168 101-289 100-270 (722)
38 PF14580 LRR_9: Leucine-rich r 98.3 1E-06 2.2E-11 70.9 4.9 112 184-314 9-125 (175)
39 KOG2120 SCF ubiquitin ligase, 98.2 1.8E-08 4E-13 85.3 -6.1 176 124-312 186-373 (419)
40 PF13855 LRR_8: Leucine rich r 98.2 3.4E-06 7.4E-11 55.6 5.1 57 6-73 1-59 (61)
41 KOG1909 Ran GTPase-activating 98.1 4.3E-07 9.2E-12 78.7 -1.9 239 28-290 29-309 (382)
42 KOG1909 Ran GTPase-activating 98.0 8.6E-07 1.9E-11 76.9 -0.6 37 252-289 210-251 (382)
43 KOG2120 SCF ubiquitin ligase, 98.0 3E-07 6.5E-12 78.1 -3.5 182 100-291 186-375 (419)
44 PLN03150 hypothetical protein; 98.0 1.2E-05 2.7E-10 78.4 6.5 105 124-232 419-524 (623)
45 PF13855 LRR_8: Leucine rich r 97.8 4.6E-05 1E-09 50.1 5.5 60 29-110 1-60 (61)
46 KOG1859 Leucine-rich repeat pr 97.8 1.2E-07 2.6E-12 89.4 -10.7 127 123-266 164-290 (1096)
47 PLN03150 hypothetical protein; 97.7 8.3E-05 1.8E-09 72.7 6.3 114 148-272 419-532 (623)
48 KOG1947 Leucine rich repeat pr 97.6 3.1E-06 6.7E-11 80.3 -4.6 137 28-180 187-330 (482)
49 KOG0531 Protein phosphatase 1, 97.3 6.2E-05 1.3E-09 70.1 0.5 99 101-205 97-196 (414)
50 KOG1859 Leucine-rich repeat pr 97.3 8.5E-06 1.9E-10 77.3 -5.5 123 172-313 165-290 (1096)
51 PF12799 LRR_4: Leucine Rich r 97.3 0.00031 6.6E-09 42.6 3.1 39 256-296 2-40 (44)
52 KOG2982 Uncharacterized conser 97.2 0.00027 5.8E-09 60.6 3.3 182 101-295 73-265 (418)
53 KOG3665 ZYG-1-like serine/thre 97.2 0.00016 3.4E-09 71.0 2.0 60 168-232 170-229 (699)
54 KOG1947 Leucine rich repeat pr 97.2 3.9E-05 8.4E-10 72.8 -2.4 108 101-208 190-308 (482)
55 KOG0531 Protein phosphatase 1, 97.2 6.6E-05 1.4E-09 69.9 -1.1 81 119-204 91-171 (414)
56 PF12799 LRR_4: Leucine Rich r 97.1 0.00075 1.6E-08 40.9 3.6 39 6-46 1-40 (44)
57 KOG2982 Uncharacterized conser 96.9 0.00034 7.4E-09 60.0 1.4 87 253-344 197-290 (418)
58 KOG1644 U2-associated snRNP A' 96.8 0.0025 5.4E-08 51.7 5.5 103 195-313 42-151 (233)
59 KOG3665 ZYG-1-like serine/thre 96.8 0.001 2.2E-08 65.4 3.3 80 147-232 122-204 (699)
60 COG5238 RNA1 Ran GTPase-activa 96.3 0.0023 5E-08 54.3 2.3 183 101-290 32-253 (388)
61 KOG1644 U2-associated snRNP A' 95.9 0.021 4.5E-07 46.5 5.5 79 148-232 43-122 (233)
62 KOG2123 Uncharacterized conser 95.1 0.0012 2.6E-08 56.2 -4.1 97 64-177 20-123 (388)
63 KOG2123 Uncharacterized conser 95.1 0.00076 1.7E-08 57.3 -5.3 101 5-129 18-123 (388)
64 PF13306 LRR_5: Leucine rich r 94.9 0.18 3.8E-06 38.2 7.8 35 119-156 77-112 (129)
65 KOG4579 Leucine-rich repeat (L 94.7 0.0064 1.4E-07 46.4 -0.7 59 221-288 51-109 (177)
66 KOG3864 Uncharacterized conser 94.5 0.0085 1.9E-07 48.7 -0.4 70 219-294 121-191 (221)
67 PF13306 LRR_5: Leucine rich r 94.3 0.33 7.2E-06 36.7 8.0 34 3-38 9-44 (129)
68 KOG2739 Leucine-rich acidic nu 93.9 0.044 9.5E-07 46.4 2.6 106 28-158 42-154 (260)
69 KOG3864 Uncharacterized conser 93.9 0.0069 1.5E-07 49.2 -2.1 66 28-112 124-189 (221)
70 KOG4579 Leucine-rich repeat (L 93.1 0.0064 1.4E-07 46.3 -3.2 32 148-180 78-109 (177)
71 PF00560 LRR_1: Leucine Rich R 92.6 0.072 1.6E-06 26.7 1.2 17 149-166 2-18 (22)
72 PF13504 LRR_7: Leucine rich r 92.5 0.099 2.2E-06 24.3 1.6 10 31-40 3-12 (17)
73 KOG2739 Leucine-rich acidic nu 92.5 0.067 1.5E-06 45.3 1.6 130 101-237 20-156 (260)
74 smart00367 LRR_CC Leucine-rich 88.5 0.31 6.6E-06 25.5 1.4 16 302-317 2-17 (26)
75 COG5238 RNA1 Ran GTPase-activa 83.4 0.27 5.8E-06 42.2 -0.7 11 6-16 30-40 (388)
76 smart00370 LRR Leucine-rich re 75.6 2.1 4.5E-05 22.1 1.5 18 30-48 3-20 (26)
77 smart00369 LRR_TYP Leucine-ric 75.6 2.1 4.5E-05 22.1 1.5 18 30-48 3-20 (26)
78 PF05725 FNIP: FNIP Repeat; I 62.4 12 0.00025 22.3 3.0 10 63-72 12-21 (44)
79 smart00364 LRR_BAC Leucine-ric 58.3 7 0.00015 20.5 1.2 16 256-272 3-18 (26)
80 PF13516 LRR_6: Leucine Rich r 48.4 13 0.00029 18.5 1.4 12 29-40 2-13 (24)
81 smart00365 LRR_SD22 Leucine-ri 30.5 42 0.00091 17.5 1.5 11 30-40 3-13 (26)
82 smart00368 LRR_RI Leucine rich 23.4 56 0.0012 17.1 1.3 11 30-40 3-13 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.7e-22 Score=207.83 Aligned_cols=248 Identities=22% Similarity=0.308 Sum_probs=150.5
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEc
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVY 107 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~ 107 (348)
+.+|+.|++.++. ++.++.+ ++.++ +|+.++++++..+.. +|..... ++ |+.|++.
T Consensus 610 ~~~L~~L~L~~s~-l~~L~~~--------~~~l~--~Lk~L~Ls~~~~l~~-ip~ls~l-----------~~-Le~L~L~ 665 (1153)
T PLN03210 610 PENLVKLQMQGSK-LEKLWDG--------VHSLT--GLRNIDLRGSKNLKE-IPDLSMA-----------TN-LETLKLS 665 (1153)
T ss_pred ccCCcEEECcCcc-ccccccc--------cccCC--CCCEEECCCCCCcCc-CCccccC-----------Cc-ccEEEec
Confidence 3445555555543 4444443 34444 666666666554544 4432222 33 6666666
Q ss_pred CCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCccc--------------------ccc
Q 039944 108 GCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALP--------------------KGM 167 (348)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~--------------------~~l 167 (348)
+|..+..+|..+..+++|+.|++++|..+..+|... .+++|+.|++++|..++.+| ..+
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc
Confidence 666666666556666666666666666665555543 34555555555554443333 211
Q ss_pred ------------------------------cCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhcccc
Q 039944 168 ------------------------------HNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGR 217 (348)
Q Consensus 168 ------------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 217 (348)
..+++|++|++++|..+..+|..++.+++|+.|++.+|..+..++..
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--- 821 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--- 821 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---
Confidence 01234555555555555555655566666666666666666555522
Q ss_pred ccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCC
Q 039944 218 GFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPE 297 (348)
Q Consensus 218 ~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 297 (348)
..+++|+.|++++ |..+..+|. .+.+|+.|++++ +.++.+|..+..+++|+.|++.+|++++.+|.
T Consensus 822 --~~L~sL~~L~Ls~-c~~L~~~p~----------~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 822 --INLESLESLDLSG-CSRLRTFPD----------ISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred --CCccccCEEECCC-CCccccccc----------cccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 2456666666666 666655554 345677777776 56777888888899999999999999999887
Q ss_pred C-CCCCCCcEEEEcCCchhHH
Q 039944 298 K-GLPSSLLELRISRCPLIAE 317 (348)
Q Consensus 298 ~-~~~~~L~~L~l~~c~~l~~ 317 (348)
. .-.++|+.+++++|++|+.
T Consensus 888 ~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 888 NISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccccccCCCeeecCCCccccc
Confidence 3 2268899999999998864
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=7e-22 Score=203.38 Aligned_cols=284 Identities=20% Similarity=0.255 Sum_probs=207.2
Q ss_pred CCCCcccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccC
Q 039944 3 DTNSSLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSK 82 (348)
Q Consensus 3 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 82 (348)
..+++|+.|+++++..++.+|....+++|+.|++++|..+..+|.. ++.++ +|+.|++++|..+.. +|.
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s--------i~~L~--~L~~L~L~~c~~L~~-Lp~ 699 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS--------IQYLN--KLEDLDMSRCENLEI-LPT 699 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh--------hhccC--CCCEEeCCCCCCcCc-cCC
Confidence 4577888888887777777776666888888888888878777765 67777 888888888887777 776
Q ss_pred CCCCCCcceeEeccC---------CCCccEEEEcCCCCcccchhhhcCCCccceecccccccc------cccCC-CCCCC
Q 039944 83 NELPATLESLEVGNL---------PLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNL------VSFPE-GGLPC 146 (348)
Q Consensus 83 ~~~~~~L~~L~i~~l---------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l------~~~~~-~~~~~ 146 (348)
...+++|+.|.+..+ +.+|+.|++.++. +..+|..+ .+++|+.|.+..+... ..++. ....+
T Consensus 700 ~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 700 GINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred cCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence 544455555555221 1235556665543 44444322 4556666666543211 00111 11224
Q ss_pred CCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCcc
Q 039944 147 AKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLR 226 (348)
Q Consensus 147 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 226 (348)
++|+.|++++|..+..+|..++++++|++|++++|..++.+|. ...+++|+.|++++|..+...+ ....+|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~-~~~L~sL~~L~Ls~c~~L~~~p-------~~~~nL~ 849 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT-GINLESLESLDLSGCSRLRTFP-------DISTNIS 849 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC-CCCccccCEEECCCCCcccccc-------ccccccC
Confidence 6899999999988899999999999999999999999999984 4478999999999998877655 2347899
Q ss_pred EEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCC------
Q 039944 227 RLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGL------ 300 (348)
Q Consensus 227 ~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~------ 300 (348)
.|++++ +.++.+|.+. ..+++|+.|++.+|+.++.+|..+..+++|+.+++.+|+.++.++....
T Consensus 850 ~L~Ls~--n~i~~iP~si-------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~ 920 (1153)
T PLN03210 850 DLNLSR--TGIEEVPWWI-------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAM 920 (1153)
T ss_pred EeECCC--CCCccChHHH-------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhh
Confidence 999998 6888899877 4788999999999999999999889999999999999999986644221
Q ss_pred --------CCCCcEEEEcCCchhH
Q 039944 301 --------PSSLLELRISRCPLIA 316 (348)
Q Consensus 301 --------~~~L~~L~l~~c~~l~ 316 (348)
.++...+.+.+|.+|.
T Consensus 921 ~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 921 ATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred hcccccccCCchhccccccccCCC
Confidence 1233445667776664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.7e-21 Score=199.45 Aligned_cols=128 Identities=23% Similarity=0.160 Sum_probs=68.2
Q ss_pred ccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEecc
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGK 180 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~ 180 (348)
|+.|++++|.....+|..+..+++|++|++++|.....+|..+..+++|+.|++.+|.....+|..+..+++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 66666666554445555556666666666665544444555555555666666665544444555555566666666665
Q ss_pred CCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecc
Q 039944 181 GGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 181 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 232 (348)
|.....+|..++.+++|+.|++.++......+ ..+..+++|+.|++++
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP----PSIFSLQKLISLDLSD 293 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCc----hhHhhccCcCEEECcC
Confidence 53333444445555556666555543222222 1234455555555554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=2.6e-21 Score=198.05 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=22.3
Q ss_pred CCCCCcccEEeecCcccccccCCCC--CCCCccEEEeccCc
Q 039944 2 CDTNSSLEILDIEKCHSLTYIAAVQ--LPSSLKKLQICDCY 40 (348)
Q Consensus 2 ~~~~~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~ 40 (348)
|..+++|+.|+++++.-...+|... .+.+|++|++++|.
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~ 129 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc
Confidence 3456777777777643223455432 25666666666665
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.3e-22 Score=181.40 Aligned_cols=309 Identities=19% Similarity=0.278 Sum_probs=197.7
Q ss_pred CCCCCCcccEEeecCcccccccCCCCC-CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCcccc
Q 039944 1 MCDTNSSLEILDIEKCHSLTYIAAVQL-PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCI 79 (348)
Q Consensus 1 ~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 79 (348)
+|.++++|+.+++.+ +.++.+|..+- ..+|+.|++.++. +..+..+ .++.+. .||.++++. +.+.+
T Consensus 97 ~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se-------~L~~l~--alrslDLSr-N~is~- 163 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNL-ISSVTSE-------ELSALP--ALRSLDLSR-NLISE- 163 (873)
T ss_pred HHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccc-cccccHH-------HHHhHh--hhhhhhhhh-chhhc-
Confidence 366789999999986 68888888766 5668888888886 6665544 344444 677777765 34554
Q ss_pred ccCCCCC--CCcceeEe-------------ccCCCCccEEEEcCCCCcccch-hhhcCCCccceeccccc----------
Q 039944 80 FSKNELP--ATLESLEV-------------GNLPLSLKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSC---------- 133 (348)
Q Consensus 80 ~~~~~~~--~~L~~L~i-------------~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~---------- 133 (348)
++...+| ..+++|.+ ..+- +|..|.+++++ ++.+| ..+.++++|+.|++..|
T Consensus 164 i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-sL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltF 241 (873)
T KOG4194|consen 164 IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-SLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF 241 (873)
T ss_pred ccCCCCCCCCCceEEeeccccccccccccccccc-hheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhh
Confidence 5554444 24566555 2233 36666666554 33333 44444666666666542
Q ss_pred -------------ccccccCCC-CCCCCCccEEEEecCCCcCccc-ccccCCCCcceeEeccCCCCCcc-cccCCCCCCc
Q 039944 134 -------------GNLVSFPEG-GLPCAKLTRLTILDCKRLEALP-KGMHNLTSLQYLRIGKGGALPSL-EEEDGLPTNL 197 (348)
Q Consensus 134 -------------~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L 197 (348)
+.+..+..+ +..+.++++|++..|. +..+- .++.+++.|++|+++++ .+..+ +..+..+++|
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKL 319 (873)
T ss_pred cCchhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchh-hhheeecchhhhcccc
Confidence 122222221 2236677888877743 44443 45678888888888876 44433 3367888899
Q ss_pred CeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcc-cc---cc
Q 039944 198 QSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLE-RL---SS 273 (348)
Q Consensus 198 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~i---~~ 273 (348)
+.|+++. +.+...... .+..+..|++|++++ +.+..+.+. ++..+++|+.|+++. +.+. .+ ..
T Consensus 320 ~~LdLs~-N~i~~l~~~---sf~~L~~Le~LnLs~--Nsi~~l~e~------af~~lssL~~LdLr~-N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 320 KELDLSS-NRITRLDEG---SFRVLSQLEELNLSH--NSIDHLAEG------AFVGLSSLHKLDLRS-NELSWCIEDAAV 386 (873)
T ss_pred eeEeccc-cccccCChh---HHHHHHHhhhhcccc--cchHHHHhh------HHHHhhhhhhhcCcC-CeEEEEEecchh
Confidence 9999988 456655543 566778888888887 666666553 235677888888887 3443 22 22
Q ss_pred ccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEcCCchhHHHhhccCCccccCCCCcCEEEecceeeccC
Q 039944 274 SIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRISRCPLIAEKCRKDGGQYWDLLTHIPRVEIDWKSVFGD 346 (348)
Q Consensus 274 ~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 346 (348)
.+..+++|++|++.| ++++.+|...+ ++.|+.|++.+++.-+ .....+..+ ++.++.++..++.||
T Consensus 387 ~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaS-----Iq~nAFe~m-~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIAS-----IQPNAFEPM-ELKELVMNSSSFLCD 454 (873)
T ss_pred hhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCccee-----ecccccccc-hhhhhhhcccceEEe
Confidence 466788888888888 57888887555 6888888888876322 233345555 777777777777665
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=3.3e-19 Score=161.26 Aligned_cols=280 Identities=19% Similarity=0.211 Sum_probs=189.9
Q ss_pred CCCcccEEeecCcccccccCCCCCC--CCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCcccccc
Q 039944 4 TNSSLEILDIEKCHSLTYIAAVQLP--SSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFS 81 (348)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 81 (348)
.++.|++|+|+. +.+.+++...|+ .++++|+++++. +..+..+ -|..+. +|-.|.++. +.++. +|
T Consensus 147 ~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~-------~F~~ln--sL~tlkLsr-Nritt-Lp 213 (873)
T KOG4194|consen 147 ALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETG-------HFDSLN--SLLTLKLSR-NRITT-LP 213 (873)
T ss_pred hHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeecccc-ccccccc-------cccccc--hheeeeccc-Ccccc-cC
Confidence 345666777765 456666655552 456677776665 5555544 355555 566666655 33444 44
Q ss_pred CCCC--CCCcceeEe-------------ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCC-CCCC
Q 039944 82 KNEL--PATLESLEV-------------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPE-GGLP 145 (348)
Q Consensus 82 ~~~~--~~~L~~L~i-------------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~ 145 (348)
...+ .+.|+.|.+ .++|+ |+.|.+..+....---.++..+.++++|++.. +.+..+.. ++..
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S-l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS-LQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFG 291 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchh-hhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccc
Confidence 4321 233333333 34566 77777777653332245677899999999988 45555554 6778
Q ss_pred CCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccc-cCCCCCCcCeeeecCCccchhhhhccccccCCCCC
Q 039944 146 CAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEE-EDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSS 224 (348)
Q Consensus 146 ~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~ 224 (348)
++.|+.|+++.|.--..-++++..+++|++|+++++ .++.+++ .+..+..|++|.+++ +++..+.. ..|.++++
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e---~af~~lss 366 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAE---GAFVGLSS 366 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHh---hHHHHhhh
Confidence 999999999996543333567788999999999986 6777763 355678899999999 55776665 37889999
Q ss_pred ccEEEecccCCcccc-cccchhccCCCCCCCCCccEEEeccCCCcccccc-ccccCCCcceEeccCCCCCCCCCCCCC-C
Q 039944 225 LRRLTISRCDEDMVS-FPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGCPKLKYFPEKGL-P 301 (348)
Q Consensus 225 L~~L~l~~~c~~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~-~ 301 (348)
|+.|++.. +.+.- +.+. .+++..+++|+.|.+.+ +.++.|+. .+..++.|+.|++.++ .+.++....+ +
T Consensus 367 L~~LdLr~--N~ls~~IEDa----a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~ 438 (873)
T KOG4194|consen 367 LHKLDLRS--NELSWCIEDA----AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEP 438 (873)
T ss_pred hhhhcCcC--CeEEEEEecc----hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC-cceeeccccccc
Confidence 99999998 44432 2222 24566789999999999 78999988 7889999999999984 5665555333 3
Q ss_pred CCCcEEEEcC
Q 039944 302 SSLLELRISR 311 (348)
Q Consensus 302 ~~L~~L~l~~ 311 (348)
-.|++|-+..
T Consensus 439 m~Lk~Lv~nS 448 (873)
T KOG4194|consen 439 MELKELVMNS 448 (873)
T ss_pred chhhhhhhcc
Confidence 3666666553
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=7.1e-20 Score=166.91 Aligned_cols=278 Identities=16% Similarity=0.174 Sum_probs=181.6
Q ss_pred CCCCcccEEeecCccccc--ccCCCCC-CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCcccc
Q 039944 3 DTNSSLEILDIEKCHSLT--YIAAVQL-PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCI 79 (348)
Q Consensus 3 ~~~~~L~~L~l~~~~~l~--~l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 79 (348)
..+|.|+.+.+..+ +++ .+|...| +.-|..|+++++. +.++|.+ +..-+ ++-.|++++. .+..
T Consensus 75 s~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~--------LE~AK--n~iVLNLS~N-~Iet- 140 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN--------LEYAK--NSIVLNLSYN-NIET- 140 (1255)
T ss_pred ccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhh-hhhcchh--------hhhhc--CcEEEEcccC-cccc-
Confidence 45677888888763 443 4666655 7788888888876 7888876 56666 7777777763 3433
Q ss_pred ccCCC-------------------CCCCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccc-ccccc
Q 039944 80 FSKNE-------------------LPATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCG-NLVSF 139 (348)
Q Consensus 80 ~~~~~-------------------~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~l~~~ 139 (348)
+|..- +|+.+++| . .|+.|.+++++.....-..+..+.+|++|.+++.. .+..+
T Consensus 141 IPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL-----~-~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~ 214 (1255)
T KOG0444|consen 141 IPNSLFINLTDLLFLDLSNNRLEMLPPQIRRL-----S-MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI 214 (1255)
T ss_pred CCchHHHhhHhHhhhccccchhhhcCHHHHHH-----h-hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC
Confidence 44321 11222222 2 25555666555322222333345555666665432 34556
Q ss_pred CCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhcccccc
Q 039944 140 PEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGF 219 (348)
Q Consensus 140 ~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 219 (348)
|.++-.+.||..++++. +++..+|..+..+++|+.|+++++ .++.+....+.-.+|++|+++. +.+...| ..+
T Consensus 215 Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP----~av 287 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLP----DAV 287 (1255)
T ss_pred CCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccch----HHH
Confidence 66666677777777776 456777777777777778877775 4555544455566777777777 4566666 346
Q ss_pred CCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCC-
Q 039944 220 HRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEK- 298 (348)
Q Consensus 220 ~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~- 298 (348)
..++.|+.|.+.++--.++.+|.++| .+.+|+.++..+ +.+.-+|.++..|..|+.|.++. +.+-.+|+.
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIG-------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaI 358 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIG-------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAI 358 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchh-------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhh
Confidence 67777777777763334567777774 666788888877 67888888888899999999976 456667873
Q ss_pred CCCCCCcEEEEcCCchhH
Q 039944 299 GLPSSLLELRISRCPLIA 316 (348)
Q Consensus 299 ~~~~~L~~L~l~~c~~l~ 316 (348)
.+.+-|+.|+++.+|+|.
T Consensus 359 HlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhcCCcceeeccCCcCcc
Confidence 237889999999988773
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.62 E-value=8.1e-18 Score=153.67 Aligned_cols=260 Identities=21% Similarity=0.213 Sum_probs=176.2
Q ss_pred CCcccEEeecCcccccccCCCC-CCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC
Q 039944 5 NSSLEILDIEKCHSLTYIAAVQ-LPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN 83 (348)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (348)
+..|..|+++. +.+++.|... ..+++-+|.++++. ++.||.. ++-+++ .|-.|+++. +.+.. +|+.
T Consensus 102 l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~-------lfinLt--DLLfLDLS~-NrLe~-LPPQ 168 (1255)
T KOG0444|consen 102 LKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNS-------LFINLT--DLLFLDLSN-NRLEM-LPPQ 168 (1255)
T ss_pred cccceeeecch-hhhhhcchhhhhhcCcEEEEcccCc-cccCCch-------HHHhhH--hHhhhcccc-chhhh-cCHH
Confidence 44566666665 4566666442 35666677777765 6666665 455555 555555554 33443 4432
Q ss_pred -CCCCCcceeEe----------ccCCC--CccEEEEcCCCC-cccchhhhcCCCccceecccccccccccCCCCCCCCCc
Q 039944 84 -ELPATLESLEV----------GNLPL--SLKSLFVYGCSK-LGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKL 149 (348)
Q Consensus 84 -~~~~~L~~L~i----------~~l~~--~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L 149 (348)
.....|+.|.+ ..+|+ +|..|++++... +..+|..+..+.+|..++++. +++..+|..+..+.+|
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~L 247 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNL 247 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhh
Confidence 22233444333 12233 255666665332 345677788888888888887 6677788888888888
Q ss_pred cEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCc-cchhhhhccccccCCCCCccEE
Q 039944 150 TRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNM-EIWKSMIERGRGFHRFSSLRRL 228 (348)
Q Consensus 150 ~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~l~~L~~L 228 (348)
+.|++++| .++.+.-....+.+|++|+++.+ .++.+|..+..++.|+.|.+.++. ..+.+| ..+..+.+|+.+
T Consensus 248 rrLNLS~N-~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiP----SGIGKL~~Levf 321 (1255)
T KOG0444|consen 248 RRLNLSGN-KITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIP----SGIGKLIQLEVF 321 (1255)
T ss_pred heeccCcC-ceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCc----cchhhhhhhHHH
Confidence 88888884 56666555566778888888876 677788778888888888777642 234455 356778888888
Q ss_pred EecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCC
Q 039944 229 TISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKY 294 (348)
Q Consensus 229 ~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~ 294 (348)
..++ +.++-+|.+. +.+..|+.|.++. +.+-.+|..+.-++.|+.|++..+|++.-
T Consensus 322 ~aan--N~LElVPEgl-------cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 322 HAAN--NKLELVPEGL-------CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred Hhhc--cccccCchhh-------hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccC
Confidence 8887 6778888776 6788888888876 67778888888888888888888887763
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=9.1e-15 Score=141.94 Aligned_cols=245 Identities=27% Similarity=0.375 Sum_probs=148.0
Q ss_pred ccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCC
Q 039944 8 LEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPA 87 (348)
Q Consensus 8 L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 87 (348)
-..|+++++ .++++|.. +.++|+.|.+.+|. ++.+|.. +++|++|+++++ .++. +|. .++
T Consensus 203 ~~~LdLs~~-~LtsLP~~-l~~~L~~L~L~~N~-Lt~LP~l-------------p~~Lk~LdLs~N-~Lts-LP~--lp~ 262 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDC-LPAHITTLVIPDNN-LTSLPAL-------------PPELRTLEVSGN-QLTS-LPV--LPP 262 (788)
T ss_pred CcEEEcCCC-CCCcCCcc-hhcCCCEEEccCCc-CCCCCCC-------------CCCCcEEEecCC-ccCc-ccC--ccc
Confidence 446777764 66677653 34577777777765 6766643 237777777763 5655 553 455
Q ss_pred CcceeEe--------ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCC
Q 039944 88 TLESLEV--------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKR 159 (348)
Q Consensus 88 ~L~~L~i--------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 159 (348)
+|+.|.+ ..+|.+|+.|++++|. +..+|. .+++|+.|++++| .+..+|.. ..+|+.|.+++| .
T Consensus 263 sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N-~ 333 (788)
T PRK15387 263 GLLELSIFSNPLTHLPALPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-Q 333 (788)
T ss_pred ccceeeccCCchhhhhhchhhcCEEECcCCc-cccccc---cccccceeECCCC-ccccCCCC---cccccccccccC-c
Confidence 6666655 1233457777777664 555553 2467888888774 55566542 235677777764 4
Q ss_pred cCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccc
Q 039944 160 LEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVS 239 (348)
Q Consensus 160 l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~ 239 (348)
+..+|. ..++|+.|++++| .+..+|. .+++|+.|++.+ +.+..++. ...+|+.|++++ +.+..
T Consensus 334 L~~LP~---lp~~Lq~LdLS~N-~Ls~LP~---lp~~L~~L~Ls~-N~L~~LP~-------l~~~L~~LdLs~--N~Lt~ 396 (788)
T PRK15387 334 LTSLPT---LPSGLQELSVSDN-QLASLPT---LPSELYKLWAYN-NRLTSLPA-------LPSGLKELIVSG--NRLTS 396 (788)
T ss_pred cccccc---cccccceEecCCC-ccCCCCC---CCcccceehhhc-cccccCcc-------cccccceEEecC--CcccC
Confidence 555553 1246777887765 5666662 245677777766 34444441 234677777776 45666
Q ss_pred cccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCC-CCCCCcEEEEcCCc
Q 039944 240 FPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKG-LPSSLLELRISRCP 313 (348)
Q Consensus 240 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~l~~c~ 313 (348)
+|. .+++|+.|++++ +.++.+|.. ..+|+.|++++ +.++.+|... -.++|+.|++++|+
T Consensus 397 LP~----------l~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 397 LPV----------LPSELKELMVSG-NRLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCC----------cccCCCEEEccC-CcCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 654 335677777777 456666643 23566777776 4566676531 15677777777775
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=3.5e-18 Score=148.33 Aligned_cols=254 Identities=18% Similarity=0.164 Sum_probs=149.4
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEe-------------
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEV------------- 94 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i------------- 94 (348)
+++|++|+...+- ++.+|.. ++.+. +|.-|++.. +++.. +|....++.|+++.+
T Consensus 182 m~~L~~ld~~~N~-L~tlP~~--------lg~l~--~L~~LyL~~-Nki~~-lPef~gcs~L~Elh~g~N~i~~lpae~~ 248 (565)
T KOG0472|consen 182 MKRLKHLDCNSNL-LETLPPE--------LGGLE--SLELLYLRR-NKIRF-LPEFPGCSLLKELHVGENQIEMLPAEHL 248 (565)
T ss_pred HHHHHhcccchhh-hhcCChh--------hcchh--hhHHHHhhh-ccccc-CCCCCccHHHHHHHhcccHHHhhHHHHh
Confidence 4455555555544 5555555 45555 555555554 34444 554444455555554
Q ss_pred ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCccc----------
Q 039944 95 GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALP---------- 164 (348)
Q Consensus 95 ~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~---------- 164 (348)
..++. +..|++..+. ++++|..++-+++|++|++++ +.+..+|.+++++ +|+.|.+.|++- +.+.
T Consensus 249 ~~L~~-l~vLDLRdNk-lke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~ 323 (565)
T KOG0472|consen 249 KHLNS-LLVLDLRDNK-LKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPL-RTIRREIISKGTQE 323 (565)
T ss_pred ccccc-ceeeeccccc-cccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCch-HHHHHHHHcccHHH
Confidence 23565 8888888764 888888888899999999987 6788888888888 888888888641 1110
Q ss_pred ----------------------------c----cccCCCCcceeEeccCCCCCcccc-----------------------
Q 039944 165 ----------------------------K----GMHNLTSLQYLRIGKGGALPSLEE----------------------- 189 (348)
Q Consensus 165 ----------------------------~----~l~~l~~L~~L~l~~~~~~~~~~~----------------------- 189 (348)
+ ......+.+.|++++ ..++.+|.
T Consensus 324 vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e 402 (565)
T KOG0472|consen 324 VLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE 402 (565)
T ss_pred HHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhh
Confidence 0 011223445555443 12233331
Q ss_pred ---cCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccC-
Q 039944 190 ---EDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAF- 265 (348)
Q Consensus 190 ---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~- 265 (348)
.+..+..+.+.-+.+++.+..++ ..+..+++|..|++++ +-+-.+|.+++ ....|+.|+++.+
T Consensus 403 lPk~L~~lkelvT~l~lsnn~isfv~----~~l~~l~kLt~L~L~N--N~Ln~LP~e~~-------~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 403 LPKRLVELKELVTDLVLSNNKISFVP----LELSQLQKLTFLDLSN--NLLNDLPEEMG-------SLVRLQTLNLSFNR 469 (565)
T ss_pred hhhhhHHHHHHHHHHHhhcCccccch----HHHHhhhcceeeeccc--chhhhcchhhh-------hhhhhheecccccc
Confidence 00011112222222324445444 2356667777777776 55666776663 4445666666652
Q ss_pred ---------------------CCcccccc-ccccCCCcceEeccCCCCCCCCCC-CCCCCCCcEEEEcCCch
Q 039944 266 ---------------------PNLERLSS-SIVDLQNLTELYLFGCPKLKYFPE-KGLPSSLLELRISRCPL 314 (348)
Q Consensus 266 ---------------------~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~c~~ 314 (348)
+.++.++. ++..+.+|..|++.+ +.+..+|. .+...+|++|+++|+|.
T Consensus 470 Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 470 FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 23333333 366677888888877 67888887 34578888888888874
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=2.3e-14 Score=139.12 Aligned_cols=226 Identities=30% Similarity=0.385 Sum_probs=168.5
Q ss_pred cccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCC
Q 039944 7 SLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELP 86 (348)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 86 (348)
+|+.|.+.+ ++++.+|.. +++|++|++++|. ++.+|.. +++|+.|++.++ .+.. +|. .+
T Consensus 223 ~L~~L~L~~-N~Lt~LP~l--p~~Lk~LdLs~N~-LtsLP~l-------------p~sL~~L~Ls~N-~L~~-Lp~--lp 281 (788)
T PRK15387 223 HITTLVIPD-NNLTSLPAL--PPELRTLEVSGNQ-LTSLPVL-------------PPGLLELSIFSN-PLTH-LPA--LP 281 (788)
T ss_pred CCCEEEccC-CcCCCCCCC--CCCCcEEEecCCc-cCcccCc-------------ccccceeeccCC-chhh-hhh--ch
Confidence 689999987 578888864 7899999999985 8888753 237888888775 3555 554 45
Q ss_pred CCcceeEe-----c---cCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCC
Q 039944 87 ATLESLEV-----G---NLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCK 158 (348)
Q Consensus 87 ~~L~~L~i-----~---~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 158 (348)
++|+.|.+ . ..|.+|+.|++++|. +..+|.. ..+|+.|.+++ +.+..+|.. ..+|+.|++++|
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~-N~L~~LP~l---p~~Lq~LdLS~N- 352 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYN-NQLTSLPTL---PSGLQELSVSDN- 352 (788)
T ss_pred hhcCEEECcCCccccccccccccceeECCCCc-cccCCCC---ccccccccccc-Ccccccccc---ccccceEecCCC-
Confidence 66777765 1 123459999999874 6666542 35688889987 466677752 248999999985
Q ss_pred CcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCccc
Q 039944 159 RLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMV 238 (348)
Q Consensus 159 ~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~ 238 (348)
.++.+|.. .++|+.|++++| .+..+|. .+.+|+.|+++++ .+..++. ..++|+.|++++ +.+.
T Consensus 353 ~Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~---l~~~L~~LdLs~N-~Lt~LP~-------l~s~L~~LdLS~--N~Ls 415 (788)
T PRK15387 353 QLASLPTL---PSELYKLWAYNN-RLTSLPA---LPSGLKELIVSGN-RLTSLPV-------LPSELKELMVSG--NRLT 415 (788)
T ss_pred ccCCCCCC---Ccccceehhhcc-ccccCcc---cccccceEEecCC-cccCCCC-------cccCCCEEEccC--CcCC
Confidence 57777753 457888888876 5677773 2468999999985 5665552 246899999998 6788
Q ss_pred ccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCC
Q 039944 239 SFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCP 290 (348)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 290 (348)
.+|. .+..|+.|++++ +.++.+|..+.++++|+.|++++|+
T Consensus 416 sIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 416 SLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 7775 345789999998 6789999999999999999999965
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.55 E-value=1.5e-17 Score=144.36 Aligned_cols=242 Identities=22% Similarity=0.265 Sum_probs=181.0
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEc
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVY 107 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~ 107 (348)
++.|.+|.+.++. +.+.|.. ++.+. .++.++.+. +++.+ +|... ++.+. +++++.+
T Consensus 67 L~~l~vl~~~~n~-l~~lp~a--------ig~l~--~l~~l~vs~-n~ls~-lp~~i----------~s~~~-l~~l~~s 122 (565)
T KOG0472|consen 67 LACLTVLNVHDNK-LSQLPAA--------IGELE--ALKSLNVSH-NKLSE-LPEQI----------GSLIS-LVKLDCS 122 (565)
T ss_pred ccceeEEEeccch-hhhCCHH--------HHHHH--HHHHhhccc-chHhh-ccHHH----------hhhhh-hhhhhcc
Confidence 5556666666665 5555554 45555 566666654 33444 44321 23355 7777777
Q ss_pred CCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcc
Q 039944 108 GCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSL 187 (348)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~ 187 (348)
.+. +.++++.++.+..++.++-.+ +.+.++|..+..+.++..+++.+ +.++.+|+..-+++.|++++...+ .++.+
T Consensus 123 ~n~-~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ld~~~N-~L~tl 198 (565)
T KOG0472|consen 123 SNE-LKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKHLDCNSN-LLETL 198 (565)
T ss_pred ccc-eeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHhcccchh-hhhcC
Confidence 665 556677778888888888776 66778888888888888888888 457777776666899999987764 78889
Q ss_pred cccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCC
Q 039944 188 EEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPN 267 (348)
Q Consensus 188 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 267 (348)
|+.++.+.+|+.|++.. +++...| .|.++..|.+|+++. +.++.+|.+.+ ..++++..|++.+ +.
T Consensus 199 P~~lg~l~~L~~LyL~~-Nki~~lP-----ef~gcs~L~Elh~g~--N~i~~lpae~~------~~L~~l~vLDLRd-Nk 263 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRR-NKIRFLP-----EFPGCSLLKELHVGE--NQIEMLPAEHL------KHLNSLLVLDLRD-NK 263 (565)
T ss_pred ChhhcchhhhHHHHhhh-cccccCC-----CCCccHHHHHHHhcc--cHHHhhHHHHh------cccccceeeeccc-cc
Confidence 98999999999999988 5677776 568888999999997 78888888763 3678899999998 78
Q ss_pred ccccccccccCCCcceEeccCCCCCCCCCCC-CCCCCCcEEEEcCCch
Q 039944 268 LERLSSSIVDLQNLTELYLFGCPKLKYFPEK-GLPSSLLELRISRCPL 314 (348)
Q Consensus 268 l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~ 314 (348)
++++|.++--+++|++||+++ +.+..+|.. +.. .|+.|-+.|+|-
T Consensus 264 lke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 264 LKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCch
Confidence 999999988899999999998 688888773 334 788888889883
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=7.7e-16 Score=146.35 Aligned_cols=86 Identities=26% Similarity=0.313 Sum_probs=51.3
Q ss_pred cCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccc----------------------cc
Q 039944 219 FHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSS----------------------IV 276 (348)
Q Consensus 219 ~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~----------------------~~ 276 (348)
+.++.+|+.|++++ +.+..||+.. ...+..|+.|.+++ ++++.+|.. +.
T Consensus 379 l~~~~hLKVLhLsy--NrL~~fpas~------~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~ 449 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSY--NRLNSFPASK------LRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELA 449 (1081)
T ss_pred hccccceeeeeecc--cccccCCHHH------HhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhh
Confidence 45667777777776 6666676643 13455566666666 455555553 44
Q ss_pred cCCCcceEeccCCCCCCCCCC-CCCC-CCCcEEEEcCCch
Q 039944 277 DLQNLTELYLFGCPKLKYFPE-KGLP-SSLLELRISRCPL 314 (348)
Q Consensus 277 ~~~~L~~L~l~~c~~l~~l~~-~~~~-~~L~~L~l~~c~~ 314 (348)
.++.|+.+|++. ++++.+-. ...+ ++|++|+++|++.
T Consensus 450 ~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 450 QLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 455666666664 45544322 2234 7788888877763
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=1.4e-13 Score=134.31 Aligned_cols=244 Identities=20% Similarity=0.291 Sum_probs=179.9
Q ss_pred cccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCC
Q 039944 7 SLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELP 86 (348)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 86 (348)
+...|.+++. .++.+|.. .+++|+.|++++|. ++.+|.. + .. +|+.|+++++ .++. +|.. +
T Consensus 179 ~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N~-LtsLP~~--------l--~~--nL~~L~Ls~N-~Lts-LP~~-l- 239 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPAC-IPEQITTLILDNNE-LKSLPEN--------L--QG--NIKTLYANSN-QLTS-IPAT-L- 239 (754)
T ss_pred CceEEEeCCC-CcCcCCcc-cccCCcEEEecCCC-CCcCChh--------h--cc--CCCEEECCCC-cccc-CChh-h-
Confidence 5678888874 67888754 36789999999986 8888875 2 23 8999999875 4665 5542 2
Q ss_pred CCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCccccc
Q 039944 87 ATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKG 166 (348)
Q Consensus 87 ~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 166 (348)
|.+|+.|++++|. +..+|..+ ..+|+.|++++ +.+..+|..+. ++|+.|++++| .++.+|..
T Consensus 240 -----------~~~L~~L~Ls~N~-L~~LP~~l--~s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~ 301 (754)
T PRK15370 240 -----------PDTIQEMELSINR-ITELPERL--PSALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLPAH 301 (754)
T ss_pred -----------hccccEEECcCCc-cCcCChhH--hCCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccCccc
Confidence 3458999999876 55777655 35899999986 56777887654 48999999996 57777764
Q ss_pred ccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhc
Q 039944 167 MHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKR 246 (348)
Q Consensus 167 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~ 246 (348)
+ .++|++|++++| .+..+|. ..+++|+.|++.+| .+..++. .+ .++|+.|++++ +.+..+|..
T Consensus 302 l--p~sL~~L~Ls~N-~Lt~LP~--~l~~sL~~L~Ls~N-~Lt~LP~----~l--~~sL~~L~Ls~--N~L~~LP~~--- 364 (754)
T PRK15370 302 L--PSGITHLNVQSN-SLTALPE--TLPPGLKTLEAGEN-ALTSLPA----SL--PPELQVLDVSK--NQITVLPET--- 364 (754)
T ss_pred c--hhhHHHHHhcCC-ccccCCc--cccccceeccccCC-ccccCCh----hh--cCcccEEECCC--CCCCcCChh---
Confidence 4 357899999986 5666663 23578999999886 4555552 12 36899999998 567777763
Q ss_pred cCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCC-----CCCCCcEEEEcCCch
Q 039944 247 LGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKG-----LPSSLLELRISRCPL 314 (348)
Q Consensus 247 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~-----~~~~L~~L~l~~c~~ 314 (348)
.++.|+.|++++| .+..+|..+. +.|+.|++++ +.+..+|... ..+++..|++.+++.
T Consensus 365 ------lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 365 ------LPPTITTLDVSRN-ALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred ------hcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 3568999999985 6778887654 3799999998 4677777621 147889999999873
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=4.3e-13 Score=130.96 Aligned_cols=224 Identities=23% Similarity=0.321 Sum_probs=161.3
Q ss_pred CcccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCC
Q 039944 6 SSLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNEL 85 (348)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 85 (348)
++|+.|++++ +.++.+|... +++|+.|++++|. ++.+|.. +. . +|+.|+++++. +.. +|.. +
T Consensus 199 ~~L~~L~Ls~-N~LtsLP~~l-~~nL~~L~Ls~N~-LtsLP~~--------l~--~--~L~~L~Ls~N~-L~~-LP~~-l 260 (754)
T PRK15370 199 EQITTLILDN-NELKSLPENL-QGNIKTLYANSNQ-LTSIPAT--------LP--D--TIQEMELSINR-ITE-LPER-L 260 (754)
T ss_pred cCCcEEEecC-CCCCcCChhh-ccCCCEEECCCCc-cccCChh--------hh--c--cccEEECcCCc-cCc-CChh-H
Confidence 3689999997 5788888643 5799999999987 8888865 21 2 79999999864 555 5542 2
Q ss_pred CCCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccc
Q 039944 86 PATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPK 165 (348)
Q Consensus 86 ~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 165 (348)
+.+|+.|++++| .+..+|..+ .++|+.|++++| .+..+|..+. ++|+.|++++| .+..+|.
T Consensus 261 ------------~s~L~~L~Ls~N-~L~~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~ 321 (754)
T PRK15370 261 ------------PSALQSLDLFHN-KISCLPENL--PEELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSN-SLTALPE 321 (754)
T ss_pred ------------hCCCCEEECcCC-ccCcccccc--CCCCcEEECCCC-ccccCcccch--hhHHHHHhcCC-ccccCCc
Confidence 345888888865 466677654 358999999884 6667776543 47889999885 4666765
Q ss_pred cccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchh
Q 039944 166 GMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDK 245 (348)
Q Consensus 166 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~ 245 (348)
.+ .++|+.|++++| .+..+|.. .+++|+.|++++| .+..++. .+ .++|+.|++++ +.+..+|...
T Consensus 322 ~l--~~sL~~L~Ls~N-~Lt~LP~~--l~~sL~~L~Ls~N-~L~~LP~----~l--p~~L~~LdLs~--N~Lt~LP~~l- 386 (754)
T PRK15370 322 TL--PPGLKTLEAGEN-ALTSLPAS--LPPELQVLDVSKN-QITVLPE----TL--PPTITTLDVSR--NALTNLPENL- 386 (754)
T ss_pred cc--cccceeccccCC-ccccCChh--hcCcccEEECCCC-CCCcCCh----hh--cCCcCEEECCC--CcCCCCCHhH-
Confidence 44 468999999887 56667733 3479999999986 4555542 12 36899999998 5677787744
Q ss_pred ccCCCCCCCCCccEEEeccCCCcccccccc----ccCCCcceEeccCCC
Q 039944 246 RLGTALPLPASLTSLWIEAFPNLERLSSSI----VDLQNLTELYLFGCP 290 (348)
Q Consensus 246 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~----~~~~~L~~L~l~~c~ 290 (348)
+..|+.|++++ +.+..+|..+ ..++.+..+++.+++
T Consensus 387 --------~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 387 --------PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred --------HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 34688999988 5677777644 335778899998865
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=8.5e-15 Score=113.48 Aligned_cols=161 Identities=25% Similarity=0.329 Sum_probs=109.0
Q ss_pred hcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcC
Q 039944 119 LDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQ 198 (348)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 198 (348)
+..+.+++.|.++. +.+..+|+.+..+.+|+.|++++ +.++++|..++.+++|++|+++-+ .+..+|+.+|.+|-|+
T Consensus 29 Lf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 44566677777776 56666777777777777777776 457777777777777777777643 5666777777777777
Q ss_pred eeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccC
Q 039944 199 SLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDL 278 (348)
Q Consensus 199 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~ 278 (348)
.|++..++--+.... ..|..+..|+.|.+++ +.++.+|.+.| .+++||.|.+.. +.+-++|..++.+
T Consensus 106 vldltynnl~e~~lp---gnff~m~tlralyl~d--ndfe~lp~dvg-------~lt~lqil~lrd-ndll~lpkeig~l 172 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLP---GNFFYMTTLRALYLGD--NDFEILPPDVG-------KLTNLQILSLRD-NDLLSLPKEIGDL 172 (264)
T ss_pred hhhccccccccccCC---cchhHHHHHHHHHhcC--CCcccCChhhh-------hhcceeEEeecc-CchhhCcHHHHHH
Confidence 777776443222221 2345566777777777 67777777773 667777777777 5666777777777
Q ss_pred CCcceEeccCCCCCCCCC
Q 039944 279 QNLTELYLFGCPKLKYFP 296 (348)
Q Consensus 279 ~~L~~L~l~~c~~l~~l~ 296 (348)
+.|++|.+.+ +.++-+|
T Consensus 173 t~lrelhiqg-nrl~vlp 189 (264)
T KOG0617|consen 173 TRLRELHIQG-NRLTVLP 189 (264)
T ss_pred HHHHHHhccc-ceeeecC
Confidence 8888888877 3455443
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=2.2e-14 Score=124.68 Aligned_cols=86 Identities=24% Similarity=0.350 Sum_probs=59.4
Q ss_pred ccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccccc-ccccCCCcceEeccCCCCCCCCC
Q 039944 218 GFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGCPKLKYFP 296 (348)
Q Consensus 218 ~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~ 296 (348)
.|.++++|+.|++++ +.++.+.+. +|.....+++|.+.. +.+..+.. .+.++..|+.|++++ ++++-+.
T Consensus 269 cf~~L~~L~~lnlsn--N~i~~i~~~------aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~ 338 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSN--NKITRIEDG------AFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVA 338 (498)
T ss_pred HHhhcccceEeccCC--Cccchhhhh------hhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEe
Confidence 467788888888887 666666553 245667788888877 56766655 567788888888888 4666655
Q ss_pred CCCC--CCCCcEEEEcCCc
Q 039944 297 EKGL--PSSLLELRISRCP 313 (348)
Q Consensus 297 ~~~~--~~~L~~L~l~~c~ 313 (348)
...+ ..+|.+|.+-.+|
T Consensus 339 ~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cccccccceeeeeehccCc
Confidence 5333 5677777777665
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=1.3e-13 Score=106.97 Aligned_cols=160 Identities=21% Similarity=0.272 Sum_probs=134.2
Q ss_pred ccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEecc
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGK 180 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~ 180 (348)
+++|.++.+ +++.+|..+..+.+|+.|++++ +.++++|..++.+++|+.|++.- +.+..+|.+++.+|.|+.|++.+
T Consensus 35 ITrLtLSHN-Kl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHN-KLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccC-ceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccc
Confidence 778888865 4778888899999999999987 78999999999999999999976 56788899999999999999997
Q ss_pred CCCC-CcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccE
Q 039944 181 GGAL-PSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTS 259 (348)
Q Consensus 181 ~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~ 259 (348)
++.- ..+|-.+..+..|+.|.++.+ ..+..+. ....+++|+.|.+.+ +.+-.+|.+.| .+.+|++
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~----dvg~lt~lqil~lrd--ndll~lpkeig-------~lt~lre 177 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDN-DFEILPP----DVGKLTNLQILSLRD--NDLLSLPKEIG-------DLTRLRE 177 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCC-CcccCCh----hhhhhcceeEEeecc--CchhhCcHHHH-------HHHHHHH
Confidence 6433 356766777889999999984 4677774 478899999999998 78889999884 6788999
Q ss_pred EEeccCCCccccccccccC
Q 039944 260 LWIEAFPNLERLSSSIVDL 278 (348)
Q Consensus 260 L~l~~~~~l~~i~~~~~~~ 278 (348)
|++.+ ++++.+|+.++++
T Consensus 178 lhiqg-nrl~vlppel~~l 195 (264)
T KOG0617|consen 178 LHIQG-NRLTVLPPELANL 195 (264)
T ss_pred Hhccc-ceeeecChhhhhh
Confidence 99999 7899898766654
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.21 E-value=4.2e-13 Score=128.06 Aligned_cols=192 Identities=19% Similarity=0.202 Sum_probs=98.5
Q ss_pred CcccEEeecCcccccccCCCCC-CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCC
Q 039944 6 SSLEILDIEKCHSLTYIAAVQL-PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNE 84 (348)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 84 (348)
.+|++++++. +++..+|.+.. +.+|+.++..++. +..+|.. +-... +|+.+.+..+ .+.. +|..
T Consensus 241 ~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~r--------i~~~~--~L~~l~~~~n-el~y-ip~~- 305 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNLPEWIGACANLEALNANHNR-LVALPLR--------ISRIT--SLVSLSAAYN-ELEY-IPPF- 305 (1081)
T ss_pred ccceeeecch-hhhhcchHHHHhcccceEecccchh-HHhhHHH--------Hhhhh--hHHHHHhhhh-hhhh-CCCc-
Confidence 3788888886 57777885433 8899999998887 6777766 34445 6777777764 3554 4432
Q ss_pred CCCCcceeEeccCCCCccEEEEcCCCCcccchhhhcC--------------------------CCccceecccccccccc
Q 039944 85 LPATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDN--------------------------NTSLETISIDSCGNLVS 138 (348)
Q Consensus 85 ~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~--------------------------l~~L~~L~l~~~~~l~~ 138 (348)
++.+ .. |+.|++..+. +..+|+.+.. ++.|+.|.+.+|..-..
T Consensus 306 ----le~~-----~s-L~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 306 ----LEGL-----KS-LRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred ----cccc-----ce-eeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 1111 23 6666665543 4443332111 22333333333222222
Q ss_pred cCCCCCCCCCccEEEEecCCCcCcccc-cccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhcccc
Q 039944 139 FPEGGLPCAKLTRLTILDCKRLEALPK-GMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGR 217 (348)
Q Consensus 139 ~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 217 (348)
..+.+..+++|+.|++++| .+.++|. .+.++..|++|+++|| +++.+|..+..++.|++|...+ +.+...|
T Consensus 375 c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP----- 446 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP----- 446 (1081)
T ss_pred chhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech-----
Confidence 2222223345555555552 3444443 2344555555555554 4455554455555555554444 3344443
Q ss_pred ccCCCCCccEEEec
Q 039944 218 GFHRFSSLRRLTIS 231 (348)
Q Consensus 218 ~~~~l~~L~~L~l~ 231 (348)
.+..+++|+.+|++
T Consensus 447 e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLS 460 (1081)
T ss_pred hhhhcCcceEEecc
Confidence 23444555555555
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.16 E-value=5.3e-13 Score=116.98 Aligned_cols=283 Identities=19% Similarity=0.225 Sum_probs=150.0
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEc
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVY 107 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~ 107 (348)
+++++.|.+.+|..+++..-. +.-+.+. +|+.+++..|..+++ .. |+++ ..++|+ |+.|+++
T Consensus 163 CpnIehL~l~gc~~iTd~s~~------sla~~C~--~l~~l~L~~c~~iT~-~~-------Lk~l-a~gC~k-L~~lNlS 224 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLL------SLARYCR--KLRHLNLHSCSSITD-VS-------LKYL-AEGCRK-LKYLNLS 224 (483)
T ss_pred CCchhhhhhhcceeccHHHHH------HHHHhcc--hhhhhhhcccchhHH-HH-------HHHH-HHhhhh-HHHhhhc
Confidence 555555555555544432211 1123333 555555555554443 11 1110 123444 5555555
Q ss_pred CCCCccc--chhhhcCCCccceeccccccccc--ccCCCCCCCCCccEEEEecCCCcCcccc--cccCCCCcceeEeccC
Q 039944 108 GCSKLGS--IAERLDNNTSLETISIDSCGNLV--SFPEGGLPCAKLTRLTILDCKRLEALPK--GMHNLTSLQYLRIGKG 181 (348)
Q Consensus 108 ~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~l~~l~~L~~L~l~~~ 181 (348)
+|..++. +-....+...++.+...+|.... .+-.....+.-+..+++..|..+++.-- .-..+..|+.|..++|
T Consensus 225 wc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~ 304 (483)
T KOG4341|consen 225 WCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSC 304 (483)
T ss_pred cCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCC
Confidence 5554433 11222334444444444442211 1111111233455555556655544311 1144677888888877
Q ss_pred CCCCccc--ccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccE
Q 039944 182 GALPSLE--EEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTS 259 (348)
Q Consensus 182 ~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~ 259 (348)
....+.+ +.....++|+.+-+.+|..+.+.... ..-.+.+.|+.+++.+ |....+-. . ...-..++.|+.
T Consensus 305 t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft--~l~rn~~~Le~l~~e~-~~~~~d~t--L---~sls~~C~~lr~ 376 (483)
T KOG4341|consen 305 TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT--MLGRNCPHLERLDLEE-CGLITDGT--L---ASLSRNCPRLRV 376 (483)
T ss_pred CCCchHHHHHHhcCCCceEEEeccccchhhhhhhh--hhhcCChhhhhhcccc-cceehhhh--H---hhhccCCchhcc
Confidence 6655443 12356788888888888776654421 1224557888888887 65433221 1 001136778999
Q ss_pred EEeccCCCcccc-----ccccccCCCcceEeccCCCCCCCCCCC--CCCCCCcEEEEcCCchhHHHhhccCCccccCCCC
Q 039944 260 LWIEAFPNLERL-----SSSIVDLQNLTELYLFGCPKLKYFPEK--GLPSSLLELRISRCPLIAEKCRKDGGQYWDLLTH 332 (348)
Q Consensus 260 L~l~~~~~l~~i-----~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~ 332 (348)
+.++.|..++.- ...-.....|+.+.+++||.+++-..+ ...+.|+.+++.+|...++...+. ..+|
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~------~~~~ 450 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR------FATH 450 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH------HHhh
Confidence 999988777643 223344567889999999988763222 237899999999998776532221 2356
Q ss_pred cCEEEeccee
Q 039944 333 IPRVEIDWKS 342 (348)
Q Consensus 333 ~~~~~~~~~~ 342 (348)
+|++++...+
T Consensus 451 lp~i~v~a~~ 460 (483)
T KOG4341|consen 451 LPNIKVHAYF 460 (483)
T ss_pred Cccceehhhc
Confidence 7776665543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=1.4e-11 Score=110.40 Aligned_cols=132 Identities=19% Similarity=0.144 Sum_probs=58.7
Q ss_pred CCCccEEEEcCCCCcccchhhhcCCC---ccceeccccccccc----ccCCCCCCC-CCccEEEEecCCCcC----cccc
Q 039944 98 PLSLKSLFVYGCSKLGSIAERLDNNT---SLETISIDSCGNLV----SFPEGGLPC-AKLTRLTILDCKRLE----ALPK 165 (348)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~l~----~~~~~~~~~-~~L~~L~l~~~~~l~----~~~~ 165 (348)
++ |+.|++++|......+..+..+. +|++|++++|.... .+...+..+ ++|+.|++.+|.... .++.
T Consensus 81 ~~-L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CG-LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred Cc-eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 44 77777766654433333333333 36777766643220 111122223 566666666654221 1222
Q ss_pred cccCCCCcceeEeccCCCCC-----cccccCCCCCCcCeeeecCCccchhhhhc-cccccCCCCCccEEEecc
Q 039944 166 GMHNLTSLQYLRIGKGGALP-----SLEEEDGLPTNLQSLDIWGNMEIWKSMIE-RGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 166 ~l~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~l~~L~~L~l~~ 232 (348)
.+..+++|++|++++|. +. .++..+...++|+.|++++|. +...... ....+..+++|++|++++
T Consensus 160 ~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 160 ALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCC
Confidence 33445566666666542 22 111122333466666666542 2111000 001234455666666665
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=1.9e-11 Score=109.61 Aligned_cols=208 Identities=19% Similarity=0.143 Sum_probs=123.3
Q ss_pred ccEEEEcCCCCc------ccchhhhcCCCccceecccccccccccCCCCCCC---CCccEEEEecCCCcC----cccccc
Q 039944 101 LKSLFVYGCSKL------GSIAERLDNNTSLETISIDSCGNLVSFPEGGLPC---AKLTRLTILDCKRLE----ALPKGM 167 (348)
Q Consensus 101 L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~---~~L~~L~l~~~~~l~----~~~~~l 167 (348)
++++.++++... ..++..+..+++|+.|++++|......+..+..+ ++|++|++++|.... .+...+
T Consensus 53 l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l 132 (319)
T cd00116 53 LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132 (319)
T ss_pred ceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH
Confidence 666666554422 2334566778999999999865433222222222 459999999976331 222344
Q ss_pred cCC-CCcceeEeccCCCCC-----cccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccc
Q 039944 168 HNL-TSLQYLRIGKGGALP-----SLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFP 241 (348)
Q Consensus 168 ~~l-~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~ 241 (348)
..+ ++|++|++++|. +. .+...+..+++|++|++.++.--..........+..+++|+.|++++ | .+....
T Consensus 133 ~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n-~i~~~~ 209 (319)
T cd00116 133 KDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN-N-GLTDEG 209 (319)
T ss_pred HhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC-C-ccChHH
Confidence 556 899999999884 33 23334456678999999986432111100001244567999999998 5 333211
Q ss_pred cchhccCCCCCCCCCccEEEeccCCCcccc--c---ccc-ccCCCcceEeccCCCCCCC-----CCC-CCCCCCCcEEEE
Q 039944 242 LEDKRLGTALPLPASLTSLWIEAFPNLERL--S---SSI-VDLQNLTELYLFGCPKLKY-----FPE-KGLPSSLLELRI 309 (348)
Q Consensus 242 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i--~---~~~-~~~~~L~~L~l~~c~~l~~-----l~~-~~~~~~L~~L~l 309 (348)
. +.+...+..+++|++|++++| .++.. . ..+ ...+.|+.|++.+|. +++ +.. ....++|+++++
T Consensus 210 ~--~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 210 A--SALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred H--HHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEEC
Confidence 1 111122246788999999996 44421 1 111 124799999999974 431 111 001378999999
Q ss_pred cCCchh
Q 039944 310 SRCPLI 315 (348)
Q Consensus 310 ~~c~~l 315 (348)
+++..-
T Consensus 286 ~~N~l~ 291 (319)
T cd00116 286 RGNKFG 291 (319)
T ss_pred CCCCCc
Confidence 998643
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=3.6e-10 Score=112.44 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=33.7
Q ss_pred CCCCCcccEEeecCcccccccCCCC-CCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCC
Q 039944 2 CDTNSSLEILDIEKCHSLTYIAAVQ-LPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCP 74 (348)
Q Consensus 2 ~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 74 (348)
|..+|.|+.|++++|..+.++|... -+-+||.|+++++. ++.+|.+ +++++ .|.+|++....
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~--------l~~Lk--~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSG--------LGNLK--KLIYLNLEVTG 629 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchH--------HHHHH--hhheecccccc
Confidence 4455555555555555555555442 25555555555554 5555555 45555 55555555443
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=5.9e-10 Score=110.92 Aligned_cols=206 Identities=21% Similarity=0.224 Sum_probs=111.0
Q ss_pred CCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeE
Q 039944 98 PLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLR 177 (348)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~ 177 (348)
|. |+.|++++|..+..+|..++.+-+|++|+++. ..+..+|.++.++..|.+|++..+..+..+|.....+++|++|.
T Consensus 571 ~~-LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 571 PL-LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred cc-eEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 55 66666666666666666666666666666666 45666666666666666666666555555543334466666666
Q ss_pred eccCCCCCc--ccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEeccc--CCcccccccchhccCCCCCC
Q 039944 178 IGKGGALPS--LEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC--DEDMVSFPLEDKRLGTALPL 253 (348)
Q Consensus 178 l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~--c~~l~~~~~~~~~~~~~~~~ 253 (348)
+.......+ .-..+..+.+|+.+....... ... ..+..+..|.....+-. +.......... ..
T Consensus 649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~----e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~-------~~ 715 (889)
T KOG4658|consen 649 LPRSALSNDKLLLKELENLEHLENLSITISSV--LLL----EDLLGMTRLRSLLQSLSIEGCSKRTLISSL-------GS 715 (889)
T ss_pred eeccccccchhhHHhhhcccchhhheeecchh--HhH----hhhhhhHHHHHHhHhhhhcccccceeeccc-------cc
Confidence 654320000 001223344444444433221 000 01122222322111110 01112222222 36
Q ss_pred CCCccEEEeccCCCccccccc-----ccc-CCCcceEeccCCCCCCCCCCCCCCCCCcEEEEcCCchhHHH
Q 039944 254 PASLTSLWIEAFPNLERLSSS-----IVD-LQNLTELYLFGCPKLKYFPEKGLPSSLLELRISRCPLIAEK 318 (348)
Q Consensus 254 ~~~L~~L~l~~~~~l~~i~~~-----~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~ 318 (348)
+..|+.|.+.+|........+ ... ++++..+.+.+|...+.+....++++|+.|++.+|+.++..
T Consensus 716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 778899999888654322111 122 55777888888888887766556899999999998876654
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.90 E-value=2.7e-11 Score=105.77 Aligned_cols=283 Identities=16% Similarity=0.217 Sum_probs=146.3
Q ss_pred cccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccC
Q 039944 18 SLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNL 97 (348)
Q Consensus 18 ~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l 97 (348)
+++++|.. .++.-..++|+.+. ++.+|.+ .|+.+. +||.|+++. +.+.+ +..+.+ .++
T Consensus 57 GL~eVP~~-LP~~tveirLdqN~-I~~iP~~-------aF~~l~--~LRrLdLS~-N~Is~-I~p~AF---------~GL 114 (498)
T KOG4237|consen 57 GLTEVPAN-LPPETVEIRLDQNQ-ISSIPPG-------AFKTLH--RLRRLDLSK-NNISF-IAPDAF---------KGL 114 (498)
T ss_pred CcccCccc-CCCcceEEEeccCC-cccCChh-------hccchh--hhceecccc-cchhh-cChHhh---------hhh
Confidence 34444432 24556667777665 6777776 566666 777777765 34555 444433 223
Q ss_pred CCCccEEEEcCCCCcccch-hhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCcccc-cccCCCCcc
Q 039944 98 PLSLKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEALPK-GMHNLTSLQ 174 (348)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~ 174 (348)
+. +..|.+.+++++++++ ..+..+.+++.|.+..+ .+.-++. .+..++++..|.++++ .++.++. .+..+..++
T Consensus 115 ~~-l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~ 191 (498)
T KOG4237|consen 115 AS-LLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIK 191 (498)
T ss_pred Hh-hhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccc
Confidence 44 5555566655566665 44555666666666442 2222221 2334556666777663 4555554 445566666
Q ss_pred eeEeccCCCCC--cccccC-----------CCCCCcCeeeecCCccchhhhhccccccCCCCCccEE--EecccCCcccc
Q 039944 175 YLRIGKGGALP--SLEEED-----------GLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRL--TISRCDEDMVS 239 (348)
Q Consensus 175 ~L~l~~~~~~~--~~~~~~-----------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L--~l~~~c~~l~~ 239 (348)
++.+-.++... .+| +. +......-..+.. .++..+... .... .++.+ .++..|.-...
T Consensus 192 tlhlA~np~icdCnL~-wla~~~a~~~ietsgarc~~p~rl~~-~Ri~q~~a~--kf~c---~~esl~s~~~~~d~~d~~ 264 (498)
T KOG4237|consen 192 TLHLAQNPFICDCNLP-WLADDLAMNPIETSGARCVSPYRLYY-KRINQEDAR--KFLC---SLESLPSRLSSEDFPDSI 264 (498)
T ss_pred hHhhhcCccccccccc-hhhhHHhhchhhcccceecchHHHHH-HHhcccchh--hhhh---hHHhHHHhhccccCcCCc
Confidence 66554433211 111 00 0000000000111 011111100 0000 11111 11111222222
Q ss_pred cccchhccCCCCCCCCCccEEEeccCCCcccccc-ccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEcCCchhH
Q 039944 240 FPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRISRCPLIA 316 (348)
Q Consensus 240 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~ 316 (348)
.|.. .+..+++|+.|++++ +.++.|.. +|.....++.|.+.. ++++.+....+ ...|+.|++.++..-.
T Consensus 265 cP~~------cf~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 265 CPAK------CFKKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred ChHH------HHhhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEE
Confidence 2221 235688999999998 67776655 889999999999998 68888776433 6899999999875211
Q ss_pred HHhhccCCccccCCCCcCEEEecceeecc
Q 039944 317 EKCRKDGGQYWDLLTHIPRVEIDWKSVFG 345 (348)
Q Consensus 317 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 345 (348)
...-.+.+...+.++..-++.+-+
T Consensus 337 -----~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 337 -----VAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred -----EecccccccceeeeeehccCcccC
Confidence 111123455666666665555444
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.87 E-value=3.7e-11 Score=105.63 Aligned_cols=272 Identities=16% Similarity=0.200 Sum_probs=170.3
Q ss_pred CCCCcccEEeecCcccccccCCC---CCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCcccc
Q 039944 3 DTNSSLEILDIEKCHSLTYIAAV---QLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCI 79 (348)
Q Consensus 3 ~~~~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 79 (348)
..+|+++.|.+.+|..+++-... .++.+|+.|.+..|..+++..-.+ ..+.++ +|+++++++|+.+.+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~------la~gC~--kL~~lNlSwc~qi~~- 231 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY------LAEGCR--KLKYLNLSWCPQISG- 231 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH------HHHhhh--hHHHhhhccCchhhc-
Confidence 46899999999999877643322 238999999999999887754321 224455 999999999986654
Q ss_pred ccCCCCCCCcceeEeccCCCCccEEEEcCCCCccc--chhhhcCCCccceecccccccccccC--CCCCCCCCccEEEEe
Q 039944 80 FSKNELPATLESLEVGNLPLSLKSLFVYGCSKLGS--IAERLDNNTSLETISIDSCGNLVSFP--EGGLPCAKLTRLTIL 155 (348)
Q Consensus 80 ~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~l~ 155 (348)
-....+. .++.. ++.+...+|...+. +...-..++-+..+++..|+.+.+.. .....+..|+.+..+
T Consensus 232 ~gv~~~~--------rG~~~-l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s 302 (483)
T KOG4341|consen 232 NGVQALQ--------RGCKE-LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYS 302 (483)
T ss_pred CcchHHh--------ccchh-hhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhccc
Confidence 1111111 11122 55555556664432 22222345556666766765554332 122335678888888
Q ss_pred cCCCcCcccc-cc-cCCCCcceeEeccCCCCCccc--ccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEec
Q 039944 156 DCKRLEALPK-GM-HNLTSLQYLRIGKGGALPSLE--EEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTIS 231 (348)
Q Consensus 156 ~~~~l~~~~~-~l-~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 231 (348)
+|..+...+- .+ .+.++|+.+.+.+|..+.+.. ....+++.|+.+++.++....+.... ....+.+.|+.+.++
T Consensus 303 ~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~--sls~~C~~lr~lsls 380 (483)
T KOG4341|consen 303 SCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA--SLSRNCPRLRVLSLS 380 (483)
T ss_pred CCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh--hhccCCchhccCChh
Confidence 8877654431 22 567888888888887655432 12345778888888888766554221 223567888888888
Q ss_pred ccCCcccccccchhccCCCCCCCCCccEEEeccCCCccc-cccccccCCCcceEeccCCCCCCCCCC
Q 039944 232 RCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLER-LSSSIVDLQNLTELYLFGCPKLKYFPE 297 (348)
Q Consensus 232 ~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-i~~~~~~~~~L~~L~l~~c~~l~~l~~ 297 (348)
. |..+.+- ++-.++..-.....|+.+.+++|+.+.+ .-..+..+++|+.+++.+|..+..-+.
T Consensus 381 h-ce~itD~--gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 381 H-CELITDE--GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred h-hhhhhhh--hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 7 7655432 0000011113556788899999887763 333667889999999999887766443
No 27
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.81 E-value=5.1e-08 Score=87.92 Aligned_cols=166 Identities=20% Similarity=0.322 Sum_probs=79.9
Q ss_pred cCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCe
Q 039944 120 DNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQS 199 (348)
Q Consensus 120 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 199 (348)
..+++++.|+++.| .+..+|. + .++|++|.+.+|..+..+|..+ +++|++|.+++|..+..+| ++|+.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRS 116 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccce
Confidence 33566666666665 4555552 1 2356666666666666555433 3466666666664444333 34555
Q ss_pred eeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCC
Q 039944 200 LDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQ 279 (348)
Q Consensus 200 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~ 279 (348)
|++.++ ....+. .-.++|+.|.+.+ ++......... ..|++|++|.+.+|..+ .+|..+. .
T Consensus 117 L~L~~n-~~~~L~-------~LPssLk~L~I~~-~n~~~~~~lp~-------~LPsSLk~L~Is~c~~i-~LP~~LP--~ 177 (426)
T PRK15386 117 LEIKGS-ATDSIK-------NVPNGLTSLSINS-YNPENQARIDN-------LISPSLKTLSLTGCSNI-ILPEKLP--E 177 (426)
T ss_pred EEeCCC-CCcccc-------cCcchHhheeccc-ccccccccccc-------ccCCcccEEEecCCCcc-cCccccc--c
Confidence 555432 111111 0112455555543 11111110000 24566777777776544 2333333 4
Q ss_pred CcceEeccCCCCC-CCCCCCCCCCCCcEEEEcCCchhHH
Q 039944 280 NLTELYLFGCPKL-KYFPEKGLPSSLLELRISRCPLIAE 317 (348)
Q Consensus 280 ~L~~L~l~~c~~l-~~l~~~~~~~~L~~L~l~~c~~l~~ 317 (348)
+|+.|+++.+... -.++...+++++ .|++.+|-.+..
T Consensus 178 SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 178 SLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred cCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 6777776653211 123333455666 777777654433
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=2.7e-10 Score=103.93 Aligned_cols=189 Identities=26% Similarity=0.292 Sum_probs=143.4
Q ss_pred cEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccC
Q 039944 102 KSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKG 181 (348)
Q Consensus 102 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~ 181 (348)
...+++.++ ...+|..++.+..|+.+.++. +.+..+|..+..+..|..|+++. +.+..+|..++.++ |+.|.++++
T Consensus 78 ~~aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEecC
Confidence 345666654 667777788888888888877 56777888888888888999888 46778888888887 888888875
Q ss_pred CCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEE
Q 039944 182 GALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLW 261 (348)
Q Consensus 182 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~ 261 (348)
+++.+|+.++..+.|..++.+.|. +...+ ..+.++..|+.|.+.. +++..+|.+. ..+ .|..|+
T Consensus 154 -kl~~lp~~ig~~~tl~~ld~s~ne-i~slp----sql~~l~slr~l~vrR--n~l~~lp~El-------~~L-pLi~lD 217 (722)
T KOG0532|consen 154 -KLTSLPEEIGLLPTLAHLDVSKNE-IQSLP----SQLGYLTSLRDLNVRR--NHLEDLPEEL-------CSL-PLIRLD 217 (722)
T ss_pred -ccccCCcccccchhHHHhhhhhhh-hhhch----HHhhhHHHHHHHHHhh--hhhhhCCHHH-------hCC-ceeeee
Confidence 678888888888889999888854 44444 2467788888888887 7888888876 333 478889
Q ss_pred eccCCCccccccccccCCCcceEeccCCCCCCCCC----CCCCCCCCcEEEEcCC
Q 039944 262 IEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFP----EKGLPSSLLELRISRC 312 (348)
Q Consensus 262 l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~~~L~~L~l~~c 312 (348)
+++ +++..+|..|.+++.|++|-+.++| +++=| ..|...=.++|+++-|
T Consensus 218 fSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 218 FSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 885 7888999999999999999998755 44422 2444455677777776
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.2e-09 Score=96.78 Aligned_cols=210 Identities=18% Similarity=0.123 Sum_probs=137.6
Q ss_pred cccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcCCCC--cccchhhhcCCCccceecccccccc
Q 039944 59 RYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYGCSK--LGSIAERLDNNTSLETISIDSCGNL 136 (348)
Q Consensus 59 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~l 136 (348)
+++ +|++..+.+|. +.. .+..+. ...+|. ++.|+++.+-. +..+......+|+|+.|+++.|. +
T Consensus 119 n~k--kL~~IsLdn~~-V~~-~~~~~~--------~k~~~~-v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l 184 (505)
T KOG3207|consen 119 NLK--KLREISLDNYR-VED-AGIEEY--------SKILPN-VRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-L 184 (505)
T ss_pred hHH--hhhheeecCcc-ccc-cchhhh--------hhhCCc-ceeecchhhhHHhHHHHHHHHHhcccchhccccccc-c
Confidence 455 88888888864 443 222111 134577 99999988643 23345666789999999999853 3
Q ss_pred cccCCC--CCCCCCccEEEEecCCCcC-cccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhh
Q 039944 137 VSFPEG--GLPCAKLTRLTILDCKRLE-ALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMI 213 (348)
Q Consensus 137 ~~~~~~--~~~~~~L~~L~l~~~~~l~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 213 (348)
..+..+ ...+++|+.|.+.+|..-. ++-..+..+|+|+.|++.+|............++.|+.|+++++..+.....
T Consensus 185 ~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 185 SNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred cCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc
Confidence 332221 1246789999999987432 2222346789999999998753332222345578899999999766554322
Q ss_pred ccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccccc--ccccCCCcceEeccC
Q 039944 214 ERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS--SIVDLQNLTELYLFG 288 (348)
Q Consensus 214 ~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~ 288 (348)
.....++.|..|+++. .++.++..--++..+....+++|++|.+.. +.+.+|+. .+..+++|+.|.+..
T Consensus 265 ---~~~~~l~~L~~Lnls~--tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 265 ---YKVGTLPGLNQLNLSS--TGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ---cccccccchhhhhccc--cCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccc
Confidence 2457789999999998 355543222122234446789999999998 67877775 556677788887765
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=1.4e-08 Score=86.06 Aligned_cols=125 Identities=20% Similarity=0.230 Sum_probs=66.0
Q ss_pred CCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCC
Q 039944 170 LTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGT 249 (348)
Q Consensus 170 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~ 249 (348)
+..|.+++++++ .+..+.+.....|.++.|+++.+ .+..+. .+..+++|+.||+++ +.+..+..+-
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N-~i~~v~-----nLa~L~~L~~LDLS~--N~Ls~~~Gwh----- 348 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQN-RIRTVQ-----NLAELPQLQLLDLSG--NLLAECVGWH----- 348 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEecccc-ceeeeh-----hhhhcccceEeeccc--chhHhhhhhH-----
Confidence 445666666654 45555555666666666666663 233322 345566666666665 4444444432
Q ss_pred CCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCC---CCCCCCCcEEEEcCCc
Q 039944 250 ALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPE---KGLPSSLLELRISRCP 313 (348)
Q Consensus 250 ~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~ 313 (348)
..+-+.+.|.+.+ +.+.++. ++.++-+|..|++++ ++++.+.+ .|-.|.|+.+.+.++|
T Consensus 349 --~KLGNIKtL~La~-N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 349 --LKLGNIKTLKLAQ-NKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred --hhhcCEeeeehhh-hhHhhhh-hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 2334555666655 3444433 455556666666665 34444333 2224556666666555
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.2e-08 Score=90.66 Aligned_cols=175 Identities=11% Similarity=0.084 Sum_probs=95.9
Q ss_pred ccEEEEcCCCCcccch--hhhcCCCccceecccccccccc---cCCCCCCCCCccEEEEecCCCcCcccccc-cCCCCcc
Q 039944 101 LKSLFVYGCSKLGSIA--ERLDNNTSLETISIDSCGNLVS---FPEGGLPCAKLTRLTILDCKRLEALPKGM-HNLTSLQ 174 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~l-~~l~~L~ 174 (348)
|+.+.+.++. +...+ .....+++++.|+++.+ .+.. +-..+..+++|+.|+++.|...-...... .-+++|+
T Consensus 123 L~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 123 LREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 6667776654 43333 35566777788877763 2211 22234456777777777754322211111 3456777
Q ss_pred eeEeccCCCCC--cccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCC
Q 039944 175 YLRIGKGGALP--SLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALP 252 (348)
Q Consensus 175 ~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~ 252 (348)
.|.++.| ++. ++......+|+|+.|.+..+..+.... .....++.|++|++++ +++..++... +..
T Consensus 201 ~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~----~~~~i~~~L~~LdLs~--N~li~~~~~~-----~~~ 268 (505)
T KOG3207|consen 201 QLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKA----TSTKILQTLQELDLSN--NNLIDFDQGY-----KVG 268 (505)
T ss_pred eEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceec----chhhhhhHHhhccccC--Cccccccccc-----ccc
Confidence 7777776 332 222234556777777777753221111 1234566777777777 5555555321 113
Q ss_pred CCCCccEEEeccCCCcccc--ccc-----cccCCCcceEeccCCC
Q 039944 253 LPASLTSLWIEAFPNLERL--SSS-----IVDLQNLTELYLFGCP 290 (348)
Q Consensus 253 ~~~~L~~L~l~~~~~l~~i--~~~-----~~~~~~L~~L~l~~c~ 290 (348)
.++.|+.|.++.| .+.++ |.. ...+++|++|++..++
T Consensus 269 ~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 269 TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence 5667777777764 44433 222 3456777777777743
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=1.1e-06 Score=79.48 Aligned_cols=135 Identities=30% Similarity=0.415 Sum_probs=94.7
Q ss_pred CCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCc
Q 039944 146 CAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSL 225 (348)
Q Consensus 146 ~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L 225 (348)
+.+++.|++++| .++.+|. -.++|++|.+++|..++.+|.. .+++|+.|++.+|..+..++ ..|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~--LP~nLe~L~Ls~Cs~L~sLP----------~sL 114 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGS--IPEGLEKLTVCHCPEISGLP----------ESV 114 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCch--hhhhhhheEccCcccccccc----------ccc
Confidence 568999999998 6888872 3457999999999888888733 36799999999987665444 357
Q ss_pred cEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcc--ccccccccCCCcceEeccCCCCCCCCCCCCCCCC
Q 039944 226 RRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLE--RLSSSIVDLQNLTELYLFGCPKLKYFPEKGLPSS 303 (348)
Q Consensus 226 ~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 303 (348)
+.|++.. +....++. .|++|+.|.+.+++... .++..+ -++|+.|.+.+|..+. +|. .++.+
T Consensus 115 e~L~L~~--n~~~~L~~----------LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~-LP~-~LP~S 178 (426)
T PRK15386 115 RSLEIKG--SATDSIKN----------VPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII-LPE-KLPES 178 (426)
T ss_pred ceEEeCC--CCCccccc----------CcchHhheecccccccccccccccc--CCcccEEEecCCCccc-Ccc-ccccc
Confidence 7777764 33333332 56678888886533221 112111 1689999999988664 453 57899
Q ss_pred CcEEEEcCC
Q 039944 304 LLELRISRC 312 (348)
Q Consensus 304 L~~L~l~~c 312 (348)
|+.|+++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 999999865
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.46 E-value=7.1e-08 Score=77.62 Aligned_cols=104 Identities=23% Similarity=0.325 Sum_probs=24.5
Q ss_pred CCCcceeEeccCCCCCcccccCC-CCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccC
Q 039944 170 LTSLQYLRIGKGGALPSLEEEDG-LPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLG 248 (348)
Q Consensus 170 l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~ 248 (348)
+.++++|++.++ .+..+. .++ .+.+|+.|++++| .++.+. .+..+++|++|++++ +.++.+.....
T Consensus 18 ~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~-----~l~~L~~L~~L~L~~--N~I~~i~~~l~--- 84 (175)
T PF14580_consen 18 PVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNN-QITKLE-----GLPGLPRLKTLDLSN--NRISSISEGLD--- 84 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--T-----T----TT--EEE--S--S---S-CHHHH---
T ss_pred cccccccccccc-cccccc-chhhhhcCCCEEECCCC-CCcccc-----CccChhhhhhcccCC--CCCCccccchH---
Confidence 334555555543 333333 333 3445555555552 333332 334455566666655 44544432210
Q ss_pred CCCCCCCCccEEEeccCCCcccccc--ccccCCCcceEeccCCC
Q 039944 249 TALPLPASLTSLWIEAFPNLERLSS--SIVDLQNLTELYLFGCP 290 (348)
Q Consensus 249 ~~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~c~ 290 (348)
..+++|++|++++ +.+.++.. .+..+++|+.|++.++|
T Consensus 85 ---~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 85 ---KNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp ---HH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ---HhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 0245566666655 44544333 34556666666666655
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.6e-07 Score=86.89 Aligned_cols=169 Identities=24% Similarity=0.270 Sum_probs=87.3
Q ss_pred ccEEEEcCCCCcccchhhhcCCC-ccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEec
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNT-SLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIG 179 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~ 179 (348)
++.|.+.++. +..++.....+. +|+.|+++. +.+..+|..+..+++|+.|++++| .+.++|......+.|+.|+++
T Consensus 118 l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 118 LTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred eeEEecCCcc-cccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheecc
Confidence 5555555433 444444444443 666666665 445555444555566666666663 355555443355666666666
Q ss_pred cCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccE
Q 039944 180 KGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTS 259 (348)
Q Consensus 180 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~ 259 (348)
++ .+..+|...+.+..|+++.+.++..+.... .+..+.++..+.+.+ +.+..++... ..++.++.
T Consensus 195 ~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~-----~~~~~~~l~~l~l~~--n~~~~~~~~~-------~~l~~l~~ 259 (394)
T COG4886 195 GN-KISDLPPEIELLSALEELDLSNNSIIELLS-----SLSNLKNLSGLELSN--NKLEDLPESI-------GNLSNLET 259 (394)
T ss_pred CC-ccccCchhhhhhhhhhhhhhcCCcceecch-----hhhhcccccccccCC--ceeeeccchh-------ccccccce
Confidence 54 455555333444556666666643222222 234444455454443 3444333333 24555666
Q ss_pred EEeccCCCccccccccccCCCcceEeccCC
Q 039944 260 LWIEAFPNLERLSSSIVDLQNLTELYLFGC 289 (348)
Q Consensus 260 L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c 289 (348)
|++.+ +.+..++. +....+++.|++++.
T Consensus 260 L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 260 LDLSN-NQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ecccc-cccccccc-ccccCccCEEeccCc
Confidence 66665 45555554 556666666666653
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.41 E-value=3.1e-07 Score=84.95 Aligned_cols=191 Identities=25% Similarity=0.277 Sum_probs=140.4
Q ss_pred EEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCC-CccEEEEecCCCcCcccccccCCCCcceeEeccC
Q 039944 103 SLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCA-KLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKG 181 (348)
Q Consensus 103 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~ 181 (348)
.+....+...... ..+...+.++.|.+.. ..+.+++....... +|+.|++++ ..+..+|..+..++.|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc
Confidence 4555555432332 2344567899999987 67778888777774 899999999 467777767889999999999987
Q ss_pred CCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEE
Q 039944 182 GALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLW 261 (348)
Q Consensus 182 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~ 261 (348)
.+..++...+..++|+.+++++ ..+..++. ......+|+++.+++ +.....+... .....+..+.
T Consensus 174 -~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~----~~~~~~~L~~l~~~~--N~~~~~~~~~-------~~~~~l~~l~ 238 (394)
T COG4886 174 -DLSDLPKLLSNLSNLNNLDLSG-NKISDLPP----EIELLSALEELDLSN--NSIIELLSSL-------SNLKNLSGLE 238 (394)
T ss_pred -hhhhhhhhhhhhhhhhheeccC-CccccCch----hhhhhhhhhhhhhcC--Ccceecchhh-------hhcccccccc
Confidence 6777774444889999999999 56776663 223556699999998 4344444433 3566777777
Q ss_pred eccCCCccccccccccCCCcceEeccCCCCCCCCCCCCCCCCCcEEEEcCCc
Q 039944 262 IEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGLPSSLLELRISRCP 313 (348)
Q Consensus 262 l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 313 (348)
+.+ +.+..++..+..+++++.|++++ +.+.+++..+-..+++.|++++..
T Consensus 239 l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 239 LSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred cCC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCcc
Confidence 665 56666677888999999999998 578888774447899999999864
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=9.9e-08 Score=81.08 Aligned_cols=137 Identities=17% Similarity=0.185 Sum_probs=101.3
Q ss_pred hcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcC
Q 039944 119 LDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQ 198 (348)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 198 (348)
+..+..|+.++++. +.+..+..+..-.|.++.|+++.|. +..+ +++..+++|++|+++++ .+....-+-..+.|++
T Consensus 280 ~dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~-i~~v-~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNR-IRTV-QNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccc-cchhhhhhhhhhccceeEEeccccc-eeee-hhhhhcccceEeecccc-hhHhhhhhHhhhcCEe
Confidence 34567899999998 6788888888778899999999954 5544 56888999999999987 4444442445677999
Q ss_pred eeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccccc
Q 039944 199 SLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS 273 (348)
Q Consensus 199 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 273 (348)
+|.+++ +.++... .+..+-+|..||+++ ++++....- ..+..+|.|+.+.+.++ -+..++.
T Consensus 356 tL~La~-N~iE~LS-----GL~KLYSLvnLDl~~--N~Ie~ldeV-----~~IG~LPCLE~l~L~~N-Pl~~~vd 416 (490)
T KOG1259|consen 356 TLKLAQ-NKIETLS-----GLRKLYSLVNLDLSS--NQIEELDEV-----NHIGNLPCLETLRLTGN-PLAGSVD 416 (490)
T ss_pred eeehhh-hhHhhhh-----hhHhhhhheeccccc--cchhhHHHh-----cccccccHHHHHhhcCC-Cccccch
Confidence 999998 5566654 567778899999998 666654331 11247889999999984 4555544
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.35 E-value=4.2e-08 Score=89.94 Aligned_cols=168 Identities=24% Similarity=0.327 Sum_probs=130.6
Q ss_pred ccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEecc
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGK 180 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~ 180 (348)
|+.+.++.+. +..+|..+.++..|..++++. +.+..+|..++.++ |+.|.+++ ++++.+|..++..+.|.+|+++.
T Consensus 100 Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 100 LESLILYHNC-IRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHhcc-ceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhh
Confidence 5556665443 667788899999999999988 56778888888774 89998888 56889999999889999999998
Q ss_pred CCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEE
Q 039944 181 GGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSL 260 (348)
Q Consensus 181 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L 260 (348)
| .+.++|.-++.+.+|+.+.+.. +.+..++.. +..+ .|..||++ |+.+..+|.++ ..+..|++|
T Consensus 176 n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~E----l~~L-pLi~lDfS--cNkis~iPv~f-------r~m~~Lq~l 239 (722)
T KOG0532|consen 176 N-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE----LCSL-PLIRLDFS--CNKISYLPVDF-------RKMRHLQVL 239 (722)
T ss_pred h-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH----HhCC-ceeeeecc--cCceeecchhh-------hhhhhheee
Confidence 7 6777887888899999999988 456666642 3433 47778888 69999999987 689999999
Q ss_pred EeccCCCcccccccc---ccCCCcceEeccCC
Q 039944 261 WIEAFPNLERLSSSI---VDLQNLTELYLFGC 289 (348)
Q Consensus 261 ~l~~~~~l~~i~~~~---~~~~~L~~L~l~~c 289 (348)
-+.+ +-+++-|..+ +...-.++|++..|
T Consensus 240 ~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 240 QLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 9997 5676655522 44555677777776
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.29 E-value=1e-06 Score=70.94 Aligned_cols=112 Identities=23% Similarity=0.337 Sum_probs=39.6
Q ss_pred CCcccccCCCCCCcCeeeecCCccchhhhhccccccC-CCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEe
Q 039944 184 LPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFH-RFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWI 262 (348)
Q Consensus 184 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l 262 (348)
++..+ ....+.+++.|++.++ .+..+. .+. .+.+|+.|++++ +.++.++.- ..++.|+.|++
T Consensus 9 i~~~~-~~~n~~~~~~L~L~~n-~I~~Ie-----~L~~~l~~L~~L~Ls~--N~I~~l~~l--------~~L~~L~~L~L 71 (175)
T PF14580_consen 9 IEQIA-QYNNPVKLRELNLRGN-QISTIE-----NLGATLDKLEVLDLSN--NQITKLEGL--------PGLPRLKTLDL 71 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TT--S--S--TT------------TT--EEE-
T ss_pred ccccc-cccccccccccccccc-cccccc-----chhhhhcCCCEEECCC--CCCccccCc--------cChhhhhhccc
Confidence 33444 5566778999999994 455543 233 578999999998 677777653 36789999999
Q ss_pred ccCCCcccccccc-ccCCCcceEeccCCCCCCCCCCC-CC--CCCCcEEEEcCCch
Q 039944 263 EAFPNLERLSSSI-VDLQNLTELYLFGCPKLKYFPEK-GL--PSSLLELRISRCPL 314 (348)
Q Consensus 263 ~~~~~l~~i~~~~-~~~~~L~~L~l~~c~~l~~l~~~-~~--~~~L~~L~l~~c~~ 314 (348)
++ +.++.+...+ ..+++|+.|++++ +.+.++.+- .+ +++|+.|++.++|-
T Consensus 72 ~~-N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 72 SN-NRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -S-S---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CC-CCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 98 7898887655 4699999999998 577776652 12 79999999999984
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.8e-08 Score=85.30 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=90.8
Q ss_pred ccceecccccccc--cccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccc--cCCCCCCcCe
Q 039944 124 SLETISIDSCGNL--VSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEE--EDGLPTNLQS 199 (348)
Q Consensus 124 ~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~ 199 (348)
.+++|+++. ..+ ..+.-.+.+|.+|+.|.+.+...-+.+...+..-.+|+.|+++.|.+++.... .+..+..|..
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 366666665 222 11222334456666666666433333333444445677777776666554321 2345666777
Q ss_pred eeecCCccchhhhhccccccCCCCCccEEEecccCCcc-c--ccccchhccCCCCCCCCCccEEEeccCCCccc-ccccc
Q 039944 200 LDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDM-V--SFPLEDKRLGTALPLPASLTSLWIEAFPNLER-LSSSI 275 (348)
Q Consensus 200 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l-~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-i~~~~ 275 (348)
|++++|......... ....--++|..|++++ |... . .+..-. ..+|+|..|++++|..++. .-..+
T Consensus 265 LNlsWc~l~~~~Vtv--~V~hise~l~~LNlsG-~rrnl~~sh~~tL~-------~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTV--AVAHISETLTQLNLSG-YRRNLQKSHLSTLV-------RRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred cCchHhhccchhhhH--HHhhhchhhhhhhhhh-hHhhhhhhHHHHHH-------HhCCceeeeccccccccCchHHHHH
Confidence 777766544332211 0111224666666666 4221 1 111111 2456777777777766653 22255
Q ss_pred ccCCCcceEeccCCCCCCCCCCC----CCCCCCcEEEEcCC
Q 039944 276 VDLQNLTELYLFGCPKLKYFPEK----GLPSSLLELRISRC 312 (348)
Q Consensus 276 ~~~~~L~~L~l~~c~~l~~l~~~----~~~~~L~~L~l~~c 312 (348)
.+++.|++|.++.|-.+. |.. .-.|+|.+|++.||
T Consensus 335 ~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence 667777777777775442 221 11577777777776
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=3.4e-06 Score=55.56 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=41.6
Q ss_pred CcccEEeecCcccccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCC
Q 039944 6 SSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISC 73 (348)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 73 (348)
|+|++|++++| .++.+|...+ +++|++|++++|. +..++.+ .|..++ +|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~-------~f~~l~--~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPD-------AFSNLP--NLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETT-------TTTTST--TESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHH-------HHcCCC--CCCEEeCcCC
Confidence 56778888874 6777776554 7788888888776 7777766 567776 7888887765
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.05 E-value=4.3e-07 Score=78.72 Aligned_cols=239 Identities=20% Similarity=0.205 Sum_probs=142.6
Q ss_pred CCCccEEEeccCccccc----cccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEe--ccCCCCc
Q 039944 28 PSSLKKLQICDCYNIRT----LTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEV--GNLPLSL 101 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~----~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i--~~l~~~L 101 (348)
...+..|+++++..-.. +.. .+.+.+ +|++-++++. ++. -+...+++.|.-|.= ...|+ |
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~--------~L~~~~--~L~~v~~sd~--ftG-R~~~Ei~e~L~~l~~aL~~~~~-L 94 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAK--------VLASKK--ELREVNLSDM--FTG-RLKDEIPEALKMLSKALLGCPK-L 94 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHH--------HHhhcc--cceeeehHhh--hcC-CcHHHHHHHHHHHHHHHhcCCc-e
Confidence 56788999999872221 222 244555 7777777653 222 222223333322211 34576 9
Q ss_pred cEEEEcCCCCcccc----hhhhcCCCccceecccccccccc--------------cCCCCCCCCCccEEEEecCCCcCcc
Q 039944 102 KSLFVYGCSKLGSI----AERLDNNTSLETISIDSCGNLVS--------------FPEGGLPCAKLTRLTILDCKRLEAL 163 (348)
Q Consensus 102 ~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~l~~--------------~~~~~~~~~~L~~L~l~~~~~l~~~ 163 (348)
+.++|++|-.-... ...+.++.+|++|.+.+|- +.. ...-...-++|+.+...+|. +..-
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ 172 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENG 172 (382)
T ss_pred eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccc
Confidence 99999987644433 3445668899999998863 211 11123345689999988854 3333
Q ss_pred c-----ccccCCCCcceeEeccCCCC----CcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccC
Q 039944 164 P-----KGMHNLTSLQYLRIGKGGAL----PSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCD 234 (348)
Q Consensus 164 ~-----~~l~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c 234 (348)
+ ..+...+.|+.+.++.+.-. +-+...+.++++|+.|++..+..-........-.+..+++|+++++++ |
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d-c 251 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD-C 251 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc-c
Confidence 2 24456688999998865211 112335678999999999986432211110002467788999999999 7
Q ss_pred Ccc----cccccchhccCCCCCCCCCccEEEeccCCCcc-----ccccccccCCCcceEeccCCC
Q 039944 235 EDM----VSFPLEDKRLGTALPLPASLTSLWIEAFPNLE-----RLSSSIVDLQNLTELYLFGCP 290 (348)
Q Consensus 235 ~~l----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~i~~~~~~~~~L~~L~l~~c~ 290 (348)
.-- ..+..... ...|+|+.+.+.+| .++ .+...+..-+.|.+|++++|.
T Consensus 252 ll~~~Ga~a~~~al~------~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 252 LLENEGAIAFVDALK------ESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccHHHHHHHHh------ccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 321 12222111 24678999999985 443 223356668999999999964
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.02 E-value=8.6e-07 Score=76.88 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=18.0
Q ss_pred CCCCCccEEEeccCCCcc-----ccccccccCCCcceEeccCC
Q 039944 252 PLPASLTSLWIEAFPNLE-----RLSSSIVDLQNLTELYLFGC 289 (348)
Q Consensus 252 ~~~~~L~~L~l~~~~~l~-----~i~~~~~~~~~L~~L~l~~c 289 (348)
..++.|+.|++.++ .++ .+...+..|++|+.|++++|
T Consensus 210 ~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc
Confidence 34555666666552 222 12223444555666666655
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3e-07 Score=78.09 Aligned_cols=182 Identities=14% Similarity=0.083 Sum_probs=121.5
Q ss_pred CccEEEEcCCCCc-ccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccc--cccCCCCccee
Q 039944 100 SLKSLFVYGCSKL-GSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPK--GMHNLTSLQYL 176 (348)
Q Consensus 100 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~l~~l~~L~~L 176 (348)
.++.|++++.... ..+...+..+.+|+.|.+.+...-..+...+..-.+|+.|+++.|..+++..- .+..++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4788888854322 12345566788888888887554444444555556899999999998876543 23788999999
Q ss_pred EeccCCCCCccc-ccCC-CCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCC
Q 039944 177 RIGKGGALPSLE-EEDG-LPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLP 254 (348)
Q Consensus 177 ~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~ 254 (348)
++++|....... ..+. --++|..|+++|+.+.-...... --..++++|.+||+++ |..+.. +.. .++..+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD-~v~l~~--~~~----~~~~kf 337 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSD-SVMLKN--DCF----QEFFKF 337 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeecccc-ccccCc--hHH----HHHHhc
Confidence 999985444321 1122 23689999999875422111100 0235789999999999 765543 111 122467
Q ss_pred CCccEEEeccCCCcccccc---ccccCCCcceEeccCCCC
Q 039944 255 ASLTSLWIEAFPNLERLSS---SIVDLQNLTELYLFGCPK 291 (348)
Q Consensus 255 ~~L~~L~l~~~~~l~~i~~---~~~~~~~L~~L~l~~c~~ 291 (348)
+-|++|+++.|..+- |. .+...|+|.+|++.||-.
T Consensus 338 ~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred chheeeehhhhcCCC--hHHeeeeccCcceEEEEeccccC
Confidence 889999999998663 43 567889999999999843
No 44
>PLN03150 hypothetical protein; Provisional
Probab=97.98 E-value=1.2e-05 Score=78.42 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=72.5
Q ss_pred ccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeec
Q 039944 124 SLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIW 203 (348)
Q Consensus 124 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 203 (348)
.++.|+++++.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36677777755545667777778888888888866555777777888888888888875555677677888888888888
Q ss_pred CCccchhhhhccccccCC-CCCccEEEecc
Q 039944 204 GNMEIWKSMIERGRGFHR-FSSLRRLTISR 232 (348)
Q Consensus 204 ~~~~l~~~~~~~~~~~~~-l~~L~~L~l~~ 232 (348)
+|.....++. .+.. ..++..+++.+
T Consensus 499 ~N~l~g~iP~----~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 499 GNSLSGRVPA----ALGGRLLHRASFNFTD 524 (623)
T ss_pred CCcccccCCh----HHhhccccCceEEecC
Confidence 8653334442 2222 24566777776
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.85 E-value=4.6e-05 Score=50.05 Aligned_cols=60 Identities=22% Similarity=0.332 Sum_probs=36.8
Q ss_pred CCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcC
Q 039944 29 SSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYG 108 (348)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~ 108 (348)
++|++|++++|. +..++.. .|+.++ +|++|++++ +.+.. ++...+ ..+|+ |+.|++++
T Consensus 1 p~L~~L~l~~n~-l~~i~~~-------~f~~l~--~L~~L~l~~-N~l~~-i~~~~f---------~~l~~-L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPD-------SFSNLP--NLETLDLSN-NNLTS-IPPDAF---------SNLPN-LRYLDLSN 58 (61)
T ss_dssp TTESEEEETSST-ESEECTT-------TTTTGT--TESEEEETS-SSESE-EETTTT---------TTSTT-ESEEEETS
T ss_pred CcCcEEECCCCC-CCccCHH-------HHcCCC--CCCEeEccC-CccCc-cCHHHH---------cCCCC-CCEEeCcC
Confidence 457777777774 6777766 466666 777777775 34555 554433 33355 66666666
Q ss_pred CC
Q 039944 109 CS 110 (348)
Q Consensus 109 ~~ 110 (348)
|.
T Consensus 59 N~ 60 (61)
T PF13855_consen 59 NN 60 (61)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.78 E-value=1.2e-07 Score=89.45 Aligned_cols=127 Identities=23% Similarity=0.259 Sum_probs=82.5
Q ss_pred CccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeee
Q 039944 123 TSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDI 202 (348)
Q Consensus 123 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 202 (348)
..|..-+++. +.+..+..++.-++.++.|+++.|. +... +.+..+++|++|++++| .+..+|.....-..|..|.+
T Consensus 164 n~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk-~~~v-~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSY-NRLVLMDESLQLLPALESLNLSHNK-FTKV-DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhh-hhhh-HHHHhcccccccccccc-hhccccccchhhhhheeeee
Confidence 3455555654 5676777777667889999999854 4444 47788899999999986 56667633222234889999
Q ss_pred cCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCC
Q 039944 203 WGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFP 266 (348)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 266 (348)
+++ .++... .+.++.+|+.||++++| +..+..-. .+..+..|..|++.+++
T Consensus 240 rnN-~l~tL~-----gie~LksL~~LDlsyNl--l~~hseL~-----pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 240 RNN-ALTTLR-----GIENLKSLYGLDLSYNL--LSEHSELE-----PLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccc-HHHhhh-----hHHhhhhhhccchhHhh--hhcchhhh-----HHHHHHHHHHHhhcCCc
Confidence 884 455554 45788899999999833 33322100 00134567777777743
No 47
>PLN03150 hypothetical protein; Provisional
Probab=97.65 E-value=8.3e-05 Score=72.69 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=85.8
Q ss_pred CccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccE
Q 039944 148 KLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRR 227 (348)
Q Consensus 148 ~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 227 (348)
.++.|++.++..-..+|..+..+++|+.|++++|.....+|..++.+++|+.|+++++.-...++ ..+..+++|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP----~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP----ESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc----hHHhcCCCCCE
Confidence 37889999876656788888999999999999986555788778999999999999965444455 35788999999
Q ss_pred EEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccc
Q 039944 228 LTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLS 272 (348)
Q Consensus 228 L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 272 (348)
|++++ +.-...+|...+ ..+.++..+++.++..+...|
T Consensus 495 L~Ls~-N~l~g~iP~~l~------~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 495 LNLNG-NSLSGRVPAALG------GRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred EECcC-CcccccCChHHh------hccccCceEEecCCccccCCC
Confidence 99998 443346776552 123456788888866665444
No 48
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.59 E-value=3.1e-06 Score=80.29 Aligned_cols=137 Identities=26% Similarity=0.369 Sum_probs=76.5
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCC-CCccccccCCCCCCCcceeEeccCCCCccEEEE
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISC-PSLTCIFSKNELPATLESLEVGNLPLSLKSLFV 106 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l 106 (348)
.+.|+.|.+.+|..+...... .....+. +|+.|++++| ..... .+.... . ....++. |+.+++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~------~~~~~~~--~L~~L~l~~~~~~~~~-~~~~~~-~-----~~~~~~~-L~~l~l 250 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLD------ALALKCP--NLEELDLSGCCLLITL-SPLLLL-L-----LLSICRK-LKSLDL 250 (482)
T ss_pred CchhhHhhhcccccCChhhHH------HHHhhCc--hhheecccCccccccc-chhHhh-h-----hhhhcCC-cCccch
Confidence 678888888888766652211 0134444 8888888873 22221 111000 0 0122344 888888
Q ss_pred cCCCCcccch-hhh-cCCCccceecccccccc--cccCCCCCCCCCccEEEEecCCCcCc--ccccccCCCCcceeEecc
Q 039944 107 YGCSKLGSIA-ERL-DNNTSLETISIDSCGNL--VSFPEGGLPCAKLTRLTILDCKRLEA--LPKGMHNLTSLQYLRIGK 180 (348)
Q Consensus 107 ~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~l~~l~~L~~L~l~~ 180 (348)
+.+..+++.. ..+ ..+++|+.|.+..|..+ ..+......+++|++|++++|..+.. +.....++++|+.+.+..
T Consensus 251 ~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 251 SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 8777555432 222 33788888887777643 22333344567889999888877533 222234466666655443
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.32 E-value=6.2e-05 Score=70.08 Aligned_cols=99 Identities=19% Similarity=0.312 Sum_probs=60.9
Q ss_pred ccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEecc
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGK 180 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~ 180 (348)
++.+++.++. +..+...+..+++|++|+++. +.+..+.. +..++.|+.|++.+| .+..+ ..+..++.|+.+++++
T Consensus 97 l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 97 LEALDLYDNK-IEKIENLLSSLVNLQVLDLSF-NKITKLEG-LSTLTLLKELNLSGN-LISDI-SGLESLKSLKLLDLSY 171 (414)
T ss_pred eeeeeccccc-hhhcccchhhhhcchheeccc-cccccccc-hhhccchhhheeccC-cchhc-cCCccchhhhcccCCc
Confidence 7777777654 444443356678888888877 45555432 334456888888774 34444 3455577777777777
Q ss_pred CCCCCccccc-CCCCCCcCeeeecCC
Q 039944 181 GGALPSLEEE-DGLPTNLQSLDIWGN 205 (348)
Q Consensus 181 ~~~~~~~~~~-~~~~~~L~~L~l~~~ 205 (348)
+ .+..+... ...+.+++.+++.++
T Consensus 172 n-~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 172 N-RIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred c-hhhhhhhhhhhhccchHHHhccCC
Confidence 5 34444411 366677777777764
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.28 E-value=8.5e-06 Score=77.31 Aligned_cols=123 Identities=24% Similarity=0.171 Sum_probs=86.8
Q ss_pred CcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCC
Q 039944 172 SLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTAL 251 (348)
Q Consensus 172 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~ 251 (348)
.|...+.++| .+..+.+.+..++.++.|++++ +++.... .+..+++|++||+++ +.+..+|.-..
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLsh-Nk~~~v~-----~Lr~l~~LkhLDlsy--N~L~~vp~l~~------ 229 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSH-NKFTKVD-----NLRRLPKLKHLDLSY--NCLRHVPQLSM------ 229 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccch-hhhhhhH-----HHHhccccccccccc--chhccccccch------
Confidence 4444444433 5566666777888999999999 4555554 457889999999998 45665554221
Q ss_pred CCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCC---CCCCCCCcEEEEcCCc
Q 039944 252 PLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPE---KGLPSSLLELRISRCP 313 (348)
Q Consensus 252 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~ 313 (348)
..+ .|+.|.+.+ +.++++. ++.++.+|+.||++++ -+....+ .+...+|+.|++.|+|
T Consensus 230 ~gc-~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 230 VGC-KLQLLNLRN-NALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhh-hheeeeecc-cHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 123 489999998 6777766 7889999999999984 4444333 1226789999999988
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.27 E-value=0.00031 Score=42.59 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=26.1
Q ss_pred CccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCC
Q 039944 256 SLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFP 296 (348)
Q Consensus 256 ~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~ 296 (348)
+|++|++++ +.++.+|..+.++++|+.|++++| .+++++
T Consensus 2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 577777777 467777766777778888888775 455543
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.00027 Score=60.57 Aligned_cols=182 Identities=18% Similarity=0.169 Sum_probs=107.2
Q ss_pred ccEEEEcCCCC--cccchhhhcCCCccceecccccccccccCCCC-CCCCCccEEEEecCCCcCc--ccccccCCCCcce
Q 039944 101 LKSLFVYGCSK--LGSIAERLDNNTSLETISIDSCGNLVSFPEGG-LPCAKLTRLTILDCKRLEA--LPKGMHNLTSLQY 175 (348)
Q Consensus 101 L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~--~~~~l~~l~~L~~ 175 (348)
++.+++.++.. ++++...+.++|.|+.|+++.|. +.+..... .+..+|+.|.+.+.. +.+ .-..+..+|.+++
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcchhhhh
Confidence 78888887652 33455667789999999998753 32222222 356789999998854 322 1123467888888
Q ss_pred eEeccCCCCCccc----ccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCC
Q 039944 176 LRIGKGGALPSLE----EEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTAL 251 (348)
Q Consensus 176 L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~ 251 (348)
|.++.+ .+..+- +....-+.+++++..+|....+.... .....++++..+-+.+ |+ +.....+- ..
T Consensus 151 lHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e-~P-lK~~s~ek-----~s 220 (418)
T KOG2982|consen 151 LHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCE-GP-LKTESSEK-----GS 220 (418)
T ss_pred hhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeec-Cc-ccchhhcc-----cC
Confidence 888865 222211 01112345677777776543332211 1223467777777776 43 22222211 12
Q ss_pred CCCCCccEEEeccCCCcccccc--ccccCCCcceEeccCCCCCCCC
Q 039944 252 PLPASLTSLWIEAFPNLERLSS--SIVDLQNLTELYLFGCPKLKYF 295 (348)
Q Consensus 252 ~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~c~~l~~l 295 (348)
..+|.+.-|.+.. +.+.+|.+ .+..++.|..|.+.+.|-...+
T Consensus 221 e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 221 EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 3555566667766 56666655 6777888888888887766554
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.21 E-value=0.00016 Score=70.97 Aligned_cols=60 Identities=23% Similarity=0.191 Sum_probs=26.0
Q ss_pred cCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecc
Q 039944 168 HNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 168 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 232 (348)
.++|+|..|+++++ .+..+. ..+.+++|+.|.+.+-.--..... -.+-.+++|+.||++.
T Consensus 170 ~sFpNL~sLDIS~T-nI~nl~-GIS~LknLq~L~mrnLe~e~~~~l---~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 170 ASFPNLRSLDISGT-NISNLS-GISRLKNLQVLSMRNLEFESYQDL---IDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCccceeecCCC-CccCcH-HHhccccHHHHhccCCCCCchhhH---HHHhcccCCCeeeccc
Confidence 34555555555543 333332 344455555555544221110000 0233455666666654
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.18 E-value=3.9e-05 Score=72.77 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=52.8
Q ss_pred ccEEEEcCCCCccc--chhhhcCCCccceeccccc-ccccccC----CCCCCCCCccEEEEecCCCcCccc-ccc-cCCC
Q 039944 101 LKSLFVYGCSKLGS--IAERLDNNTSLETISIDSC-GNLVSFP----EGGLPCAKLTRLTILDCKRLEALP-KGM-HNLT 171 (348)
Q Consensus 101 L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~l~~~~----~~~~~~~~L~~L~l~~~~~l~~~~-~~l-~~l~ 171 (348)
|+.+.+.+|..+.. +......++.|+.|+++.+ ......+ .....+.+|+.|++..+..+.+.- ..+ ..++
T Consensus 190 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~ 269 (482)
T KOG1947|consen 190 LKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCP 269 (482)
T ss_pred hhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCC
Confidence 66666666655554 3344455666666666542 1111111 122234566666666655433321 111 2356
Q ss_pred CcceeEeccCCCCCc--ccccCCCCCCcCeeeecCCccc
Q 039944 172 SLQYLRIGKGGALPS--LEEEDGLPTNLQSLDIWGNMEI 208 (348)
Q Consensus 172 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l 208 (348)
+|++|.+.+|..+++ +......+++|++|++++|..+
T Consensus 270 ~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 270 NLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 666666555543322 2223344566666666666554
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.16 E-value=6.6e-05 Score=69.91 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=38.7
Q ss_pred hcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcC
Q 039944 119 LDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQ 198 (348)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 198 (348)
+..+.+|+.|++.. +.+..+...+..+++|+.|+++++ .++.+ ..+..++.|+.|++.+| .+..+. .+..+++|+
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSGN-LISDIS-GLESLKSLK 165 (414)
T ss_pred cccccceeeeeccc-cchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhheeccC-cchhcc-CCccchhhh
Confidence 44455555555555 344444332344455555555552 34433 23444445555555554 344333 333355555
Q ss_pred eeeecC
Q 039944 199 SLDIWG 204 (348)
Q Consensus 199 ~L~l~~ 204 (348)
.+++++
T Consensus 166 ~l~l~~ 171 (414)
T KOG0531|consen 166 LLDLSY 171 (414)
T ss_pred cccCCc
Confidence 555555
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.12 E-value=0.00075 Score=40.88 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=24.5
Q ss_pred CcccEEeecCcccccccCC-CCCCCCccEEEeccCccccccc
Q 039944 6 SSLEILDIEKCHSLTYIAA-VQLPSSLKKLQICDCYNIRTLT 46 (348)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~l~~~~ 46 (348)
++|++|++++ +.++++|+ ...+++|+.|++++|. +++++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 4677777776 36667766 4557777777777775 55544
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.00034 Score=59.96 Aligned_cols=87 Identities=22% Similarity=0.324 Sum_probs=51.4
Q ss_pred CCCCccEEEeccCCCcccccc--ccccCCCcceEeccCCCCCCCCCC---CCCCCCCcEEEEcCCchhHHHhhccCCc-c
Q 039944 253 LPASLTSLWIEAFPNLERLSS--SIVDLQNLTELYLFGCPKLKYFPE---KGLPSSLLELRISRCPLIAEKCRKDGGQ-Y 326 (348)
Q Consensus 253 ~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~~-~ 326 (348)
.+|++..+.+-.|+ +++... +...+|.+..|++.. .++.+... ..-+++|.-|.+.+.|-.... + +++ -
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l-~--~~err 271 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL-R--GGERR 271 (418)
T ss_pred hcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc-c--CCcce
Confidence 45667666666653 333322 556677777888876 44544322 111689999999998855432 1 222 2
Q ss_pred ccCCCCcCEEEe-cceeec
Q 039944 327 WDLLTHIPRVEI-DWKSVF 344 (348)
Q Consensus 327 ~~~i~~~~~~~~-~~~~~~ 344 (348)
.--|+.++.|.+ +|+-|-
T Consensus 272 ~llIaRL~~v~vLNGskIs 290 (418)
T KOG2982|consen 272 FLLIARLTKVQVLNGSKIS 290 (418)
T ss_pred EEEEeeccceEEecCcccc
Confidence 235688888887 454443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.85 E-value=0.0025 Score=51.70 Aligned_cols=103 Identities=16% Similarity=0.244 Sum_probs=70.7
Q ss_pred CCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccccc-
Q 039944 195 TNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS- 273 (348)
Q Consensus 195 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~- 273 (348)
-+...+++.++. +.... .+.+++.|.+|.+++ +++..+....+ ..+++|+.|.+.+ +.+..+..
T Consensus 42 d~~d~iDLtdNd-l~~l~-----~lp~l~rL~tLll~n--NrIt~I~p~L~------~~~p~l~~L~Ltn-Nsi~~l~dl 106 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLD-----NLPHLPRLHTLLLNN--NRITRIDPDLD------TFLPNLKTLILTN-NSIQELGDL 106 (233)
T ss_pred cccceecccccc-hhhcc-----cCCCccccceEEecC--Ccceeeccchh------hhccccceEEecC-cchhhhhhc
Confidence 356677777744 33332 567788888888887 77877777653 4667888999888 56766554
Q ss_pred -ccccCCCcceEeccCCCCCCCCCCCC-----CCCCCcEEEEcCCc
Q 039944 274 -SIVDLQNLTELYLFGCPKLKYFPEKG-----LPSSLLELRISRCP 313 (348)
Q Consensus 274 -~~~~~~~L~~L~l~~c~~l~~l~~~~-----~~~~L~~L~l~~c~ 313 (348)
.+..||.|++|.+-++| +++..... ..|+|+.||.++-.
T Consensus 107 ~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 107 DPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred chhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 56788899999888855 33332211 16889999988754
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.77 E-value=0.001 Score=65.44 Aligned_cols=80 Identities=28% Similarity=0.313 Sum_probs=39.6
Q ss_pred CCccEEEEecCCCcC-cccccc-cCCCCcceeEeccCCCCC-cccccCCCCCCcCeeeecCCccchhhhhccccccCCCC
Q 039944 147 AKLTRLTILDCKRLE-ALPKGM-HNLTSLQYLRIGKGGALP-SLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFS 223 (348)
Q Consensus 147 ~~L~~L~l~~~~~l~-~~~~~l-~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 223 (348)
.+|++|++.|...+. ..|..+ ..+|+|+.|.+.+..... ++.....++|+|+.||+++. .++... +...++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~-----GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLS-----GISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcH-----HHhccc
Confidence 356777776632221 112222 345677777666532211 12223345666666666663 334332 345666
Q ss_pred CccEEEecc
Q 039944 224 SLRRLTISR 232 (348)
Q Consensus 224 ~L~~L~l~~ 232 (348)
+|+.|.+.+
T Consensus 196 nLq~L~mrn 204 (699)
T KOG3665|consen 196 NLQVLSMRN 204 (699)
T ss_pred cHHHHhccC
Confidence 666666554
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.33 E-value=0.0023 Score=54.31 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=98.5
Q ss_pred ccEEEEcCCCCcccc----hhhhcCCCccceecccccc----------cccccCCCCCCCCCccEEEEecCCCcCcccc-
Q 039944 101 LKSLFVYGCSKLGSI----AERLDNNTSLETISIDSCG----------NLVSFPEGGLPCAKLTRLTILDCKRLEALPK- 165 (348)
Q Consensus 101 L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~----------~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~- 165 (348)
+++++++++..-+.. ...+.+-.+|+..+++..- ++.-+...+..||+|+..++++|..-...|+
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 777888887754443 3334445666666665421 1111222345678888888888765444443
Q ss_pred ---cccCCCCcceeEeccCCCCCccc--------------ccCCCCCCcCeeeecCCccchhhhhc-cccccCCCCCccE
Q 039944 166 ---GMHNLTSLQYLRIGKGGALPSLE--------------EEDGLPTNLQSLDIWGNMEIWKSMIE-RGRGFHRFSSLRR 227 (348)
Q Consensus 166 ---~l~~l~~L~~L~l~~~~~~~~~~--------------~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~l~~L~~ 227 (348)
.++.-+.|++|.+++| ++..+. .....-|.|+++....++ +...+.. +-..++.-.+|++
T Consensus 112 L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHENLKE 189 (388)
T ss_pred HHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcCcee
Confidence 3466678888888876 443321 012334677887776643 3222211 0012333467788
Q ss_pred EEecccCCcccccccchhccC-CCCCCCCCccEEEeccCCCcc-----ccccccccCCCcceEeccCCC
Q 039944 228 LTISRCDEDMVSFPLEDKRLG-TALPLPASLTSLWIEAFPNLE-----RLSSSIVDLQNLTELYLFGCP 290 (348)
Q Consensus 228 L~l~~~c~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~-----~i~~~~~~~~~L~~L~l~~c~ 290 (348)
+.+.+ +.++. .+...+. -....+.+|+.|++..+. .+ .+...+..|+.|+.|.+.+|-
T Consensus 190 vki~q--NgIrp--egv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 190 VKIQQ--NGIRP--EGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred EEeee--cCcCc--chhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccchh
Confidence 87776 44331 1100000 000245678888887742 32 222345667778888888874
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.86 E-value=0.021 Score=46.52 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=38.1
Q ss_pred CccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccC-CCCCCcCeeeecCCccchhhhhccccccCCCCCcc
Q 039944 148 KLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEED-GLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLR 226 (348)
Q Consensus 148 ~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 226 (348)
+...+++.++. +..+ +.+.+++.|.+|.+++| .++.+...+ ...++|..|.+.++. +..+... ..+..++.|+
T Consensus 43 ~~d~iDLtdNd-l~~l-~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl--~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKL-DNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNS-IQELGDL--DPLASCPKLE 116 (233)
T ss_pred ccceecccccc-hhhc-ccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcc-hhhhhhc--chhccCCccc
Confidence 45566666632 3333 34455666666666654 444443232 334556666666632 2222211 1234455555
Q ss_pred EEEecc
Q 039944 227 RLTISR 232 (348)
Q Consensus 227 ~L~l~~ 232 (348)
.|.+-+
T Consensus 117 ~Ltll~ 122 (233)
T KOG1644|consen 117 YLTLLG 122 (233)
T ss_pred eeeecC
Confidence 555544
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.0012 Score=56.18 Aligned_cols=97 Identities=22% Similarity=0.191 Sum_probs=54.5
Q ss_pred ccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCC--
Q 039944 64 LLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPE-- 141 (348)
Q Consensus 64 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-- 141 (348)
+.++|++.||. +.+ +.. + .++|. |+.|.|+=| +++.+. .+..+.+|+.|++.. +.+.++.+
T Consensus 20 ~vkKLNcwg~~-L~D-Isi---c--------~kMp~-lEVLsLSvN-kIssL~-pl~rCtrLkElYLRk-N~I~sldEL~ 82 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDD-ISI---C--------EKMPL-LEVLSLSVN-KISSLA-PLQRCTRLKELYLRK-NCIESLDELE 82 (388)
T ss_pred HhhhhcccCCC-ccH-HHH---H--------Hhccc-ceeEEeecc-ccccch-hHHHHHHHHHHHHHh-cccccHHHHH
Confidence 56667776664 433 221 1 23355 677766633 344442 356677777777766 34444433
Q ss_pred CCCCCCCccEEEEecCCCcCcccc-----cccCCCCcceeE
Q 039944 142 GGLPCAKLTRLTILDCKRLEALPK-----GMHNLTSLQYLR 177 (348)
Q Consensus 142 ~~~~~~~L~~L~l~~~~~l~~~~~-----~l~~l~~L~~L~ 177 (348)
.+.++++|+.|.|..|+....-++ .+..+|+|++|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 345566777777777666554433 234567777775
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.00076 Score=57.33 Aligned_cols=101 Identities=23% Similarity=0.274 Sum_probs=63.8
Q ss_pred CCcccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCC
Q 039944 5 NSSLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNE 84 (348)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 84 (348)
+.+.+.|+..+| .+.++..+..++.|++|.|+-++ ++.+.. ++.++ +|++|+|... .+.+ +..
T Consensus 18 l~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNk-IssL~p---------l~rCt--rLkElYLRkN-~I~s-ldE-- 80 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNK-ISSLAP---------LQRCT--RLKELYLRKN-CIES-LDE-- 80 (388)
T ss_pred HHHhhhhcccCC-CccHHHHHHhcccceeEEeeccc-cccchh---------HHHHH--HHHHHHHHhc-cccc-HHH--
Confidence 456777888876 56666656668888888888887 666553 47777 8888888752 3333 222
Q ss_pred CCCCcceeEeccCCCCccEEEEcCCCCcccc-----hhhhcCCCccceec
Q 039944 85 LPATLESLEVGNLPLSLKSLFVYGCSKLGSI-----AERLDNNTSLETIS 129 (348)
Q Consensus 85 ~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~ 129 (348)
|++| .++|+ |+.|.|..|.-...- ...+..+|+|+.|+
T Consensus 81 ----L~YL--knlps-Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 81 ----LEYL--KNLPS-LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ----HHHH--hcCch-hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 1222 44476 888877766543332 23345577777775
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.88 E-value=0.18 Score=38.24 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=13.3
Q ss_pred hcCCCccceecccccccccccCCC-CCCCCCccEEEEec
Q 039944 119 LDNNTSLETISIDSCGNLVSFPEG-GLPCAKLTRLTILD 156 (348)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~ 156 (348)
+..+++|+.+.+... +..++.. +..+ +|+.+.+.+
T Consensus 77 F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 334566666666431 3333332 2233 566665543
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.72 E-value=0.0064 Score=46.36 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=29.3
Q ss_pred CCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccC
Q 039944 221 RFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFG 288 (348)
Q Consensus 221 ~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~ 288 (348)
+...|...++++ +.+..||.... ..++-++.|++.+ +.+.++|..+..++.|+.|+++.
T Consensus 51 ~~~el~~i~ls~--N~fk~fp~kft------~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 51 KGYELTKISLSD--NGFKKFPKKFT------IKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred CCceEEEEeccc--chhhhCCHHHh------hccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc
Confidence 334444555555 45555554331 1233445555554 45555555555555555555555
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.0085 Score=48.68 Aligned_cols=70 Identities=24% Similarity=0.397 Sum_probs=46.1
Q ss_pred cCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccccc-ccccCCCcceEeccCCCCCCC
Q 039944 219 FHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGCPKLKY 294 (348)
Q Consensus 219 ~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~ 294 (348)
+..++.++.|.+.+ |..+.++-.+. ++ ...++|+.|++++|+.+++-.- ++.++++|+.|.+.+.+.+..
T Consensus 121 L~~l~~i~~l~l~~-ck~~dD~~L~~--l~---~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 121 LRDLRSIKSLSLAN-CKYFDDWCLER--LG---GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred Hhccchhhhheecc-ccchhhHHHHH--hc---ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 45556666677777 76665543322 11 2557888888888888875443 677788888888887655543
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.27 E-value=0.33 Score=36.68 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=10.5
Q ss_pred CCCCcccEEeecCcccccccCCCCC--CCCccEEEecc
Q 039944 3 DTNSSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICD 38 (348)
Q Consensus 3 ~~~~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~ 38 (348)
..+.+|+.+.+.. .++.++...| +.+|+.+.+.+
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred hCCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 3344444444432 2334433333 33444444443
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.91 E-value=0.044 Score=46.40 Aligned_cols=106 Identities=22% Similarity=0.209 Sum_probs=52.2
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCC-CccccccCCCCCCCcceeEeccCCCCccEEEE
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCP-SLTCIFSKNELPATLESLEVGNLPLSLKSLFV 106 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l 106 (348)
+..|+.|.+.++. ++.+-. +..+. +|++|.++... ++. + ++ ..| +..+|+ |+++.+
T Consensus 42 ~~~le~ls~~n~g-ltt~~~---------~P~Lp--~LkkL~lsdn~~~~~--~---~l----~vl-~e~~P~-l~~l~l 98 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTLTN---------FPKLP--KLKKLELSDNYRRVS--G---GL----EVL-AEKAPN-LKVLNL 98 (260)
T ss_pred ccchhhhhhhccc-eeeccc---------CCCcc--hhhhhcccCCccccc--c---cc----eeh-hhhCCc-eeEEee
Confidence 5566666666665 444331 34444 77777776531 111 0 01 000 122365 777777
Q ss_pred cCCCCcccc--hhhhcCCCccceecccccccccccCC----CCCCCCCccEEEEecCC
Q 039944 107 YGCSKLGSI--AERLDNNTSLETISIDSCGNLVSFPE----GGLPCAKLTRLTILDCK 158 (348)
Q Consensus 107 ~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~----~~~~~~~L~~L~l~~~~ 158 (348)
++|. +..+ ...+..+.+|..|++..|.... +.. .+.-+++|+.|+-.+..
T Consensus 99 s~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 99 SGNK-IKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cCCc-cccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 7765 3222 1234456667777777764332 111 11124567777655543
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.89 E-value=0.0069 Score=49.18 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=39.9
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEc
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVY 107 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~ 107 (348)
++.++.|.+.+|..+.+..-+ .+.. ..|+|+.|++++|+.+++ .... .| ..+++ |+.|.++
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~-------~l~~-~~~~L~~L~lsgC~rIT~-~GL~----~L-----~~lkn-Lr~L~l~ 184 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLE-------RLGG-LAPSLQDLDLSGCPRITD-GGLA----CL-----LKLKN-LRRLHLY 184 (221)
T ss_pred cchhhhheeccccchhhHHHH-------Hhcc-cccchheeeccCCCeech-hHHH----HH-----HHhhh-hHHHHhc
Confidence 677788888888877765433 2333 245888888888887765 3322 12 22244 6666666
Q ss_pred CCCCc
Q 039944 108 GCSKL 112 (348)
Q Consensus 108 ~~~~~ 112 (348)
+...+
T Consensus 185 ~l~~v 189 (221)
T KOG3864|consen 185 DLPYV 189 (221)
T ss_pred Cchhh
Confidence 54433
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.15 E-value=0.0064 Score=46.35 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=13.2
Q ss_pred CccEEEEecCCCcCcccccccCCCCcceeEecc
Q 039944 148 KLTRLTILDCKRLEALPKGMHNLTSLQYLRIGK 180 (348)
Q Consensus 148 ~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~ 180 (348)
.++.|++.+ +.+.++|..+..++.|+.+++..
T Consensus 78 t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 78 TATTLNLAN-NEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hhhhhhcch-hhhhhchHHHhhhHHhhhccccc
Confidence 344444443 23334444444444444444443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.57 E-value=0.072 Score=26.68 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=7.8
Q ss_pred ccEEEEecCCCcCccccc
Q 039944 149 LTRLTILDCKRLEALPKG 166 (348)
Q Consensus 149 L~~L~l~~~~~l~~~~~~ 166 (348)
|+.|++++| .++.+|+.
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 445555554 34444443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.54 E-value=0.099 Score=24.34 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=3.6
Q ss_pred ccEEEeccCc
Q 039944 31 LKKLQICDCY 40 (348)
Q Consensus 31 L~~L~l~~~~ 40 (348)
|++|++++|.
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 4444444444
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.54 E-value=0.067 Score=45.30 Aligned_cols=130 Identities=19% Similarity=0.156 Sum_probs=74.5
Q ss_pred ccEEEEcCCCCcc-cchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCC--CcCcccccccCCCCcceeE
Q 039944 101 LKSLFVYGCSKLG-SIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCK--RLEALPKGMHNLTSLQYLR 177 (348)
Q Consensus 101 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~l~~l~~L~~L~ 177 (348)
.+.+.+.+|.... .+.........|+.|.+.++ .+..+ ..+..+++|+.|.+++|+ -...++.-...+|+|++++
T Consensus 20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN 97 (260)
T ss_pred hhhhhcchhhhcCCCcccccccccchhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence 4555555544322 12233334566677766653 22222 223346799999999873 2223333335569999999
Q ss_pred eccCCC--CCcccccCCCCCCcCeeeecCCccch--hhhhccccccCCCCCccEEEecccCCcc
Q 039944 178 IGKGGA--LPSLEEEDGLPTNLQSLDIWGNMEIW--KSMIERGRGFHRFSSLRRLTISRCDEDM 237 (348)
Q Consensus 178 l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~l~~L~~L~l~~~c~~l 237 (348)
+++|+. +.+++ .+...++|..|++.+|.... .-.. ..+.-+++|+.|+-.+ +...
T Consensus 98 ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre---~vf~ll~~L~~LD~~d-v~~~ 156 (260)
T KOG2739|consen 98 LSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYRE---KVFLLLPSLKYLDGCD-VDGE 156 (260)
T ss_pred ecCCccccccccc-hhhhhcchhhhhcccCCccccccHHH---HHHHHhhhhccccccc-cCCc
Confidence 998632 23333 45667788888888875432 2221 2456678888887766 4443
No 74
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.46 E-value=0.31 Score=25.47 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=7.7
Q ss_pred CCCcEEEEcCCchhHH
Q 039944 302 SSLLELRISRCPLIAE 317 (348)
Q Consensus 302 ~~L~~L~l~~c~~l~~ 317 (348)
++|++|++++|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 3445555555554443
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=83.43 E-value=0.27 Score=42.23 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=6.2
Q ss_pred CcccEEeecCc
Q 039944 6 SSLEILDIEKC 16 (348)
Q Consensus 6 ~~L~~L~l~~~ 16 (348)
..+..++++++
T Consensus 30 d~~~evdLSGN 40 (388)
T COG5238 30 DELVEVDLSGN 40 (388)
T ss_pred cceeEEeccCC
Confidence 34556666654
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=75.64 E-value=2.1 Score=22.11 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=8.9
Q ss_pred CccEEEeccCccccccccc
Q 039944 30 SLKKLQICDCYNIRTLTVE 48 (348)
Q Consensus 30 ~L~~L~l~~~~~l~~~~~~ 48 (348)
+|+.|++++|. ++.+|.+
T Consensus 3 ~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCEEECCCCc-CCcCCHH
Confidence 45555555553 4555443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=75.64 E-value=2.1 Score=22.11 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=8.9
Q ss_pred CccEEEeccCccccccccc
Q 039944 30 SLKKLQICDCYNIRTLTVE 48 (348)
Q Consensus 30 ~L~~L~l~~~~~l~~~~~~ 48 (348)
+|+.|++++|. ++.+|.+
T Consensus 3 ~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCEEECCCCc-CCcCCHH
Confidence 45555555553 4555443
No 78
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=62.36 E-value=12 Score=22.30 Aligned_cols=10 Identities=40% Similarity=0.172 Sum_probs=6.4
Q ss_pred CccceeeeeC
Q 039944 63 SLLEHLEIIS 72 (348)
Q Consensus 63 ~~L~~L~l~~ 72 (348)
++++.|.+.+
T Consensus 12 ~~l~~L~~g~ 21 (44)
T PF05725_consen 12 SSLKSLIFGS 21 (44)
T ss_pred CCCeEEEECC
Confidence 3677777743
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=58.35 E-value=7 Score=20.47 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=7.2
Q ss_pred CccEEEeccCCCccccc
Q 039944 256 SLTSLWIEAFPNLERLS 272 (348)
Q Consensus 256 ~L~~L~l~~~~~l~~i~ 272 (348)
+|+.|++++ +.++++|
T Consensus 3 ~L~~L~vs~-N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSN-NQLTSLP 18 (26)
T ss_pred ccceeecCC-CccccCc
Confidence 344444444 3444444
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=48.38 E-value=13 Score=18.50 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=5.5
Q ss_pred CCccEEEeccCc
Q 039944 29 SSLKKLQICDCY 40 (348)
Q Consensus 29 ~~L~~L~l~~~~ 40 (348)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 345556665554
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=30.53 E-value=42 Score=17.49 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=6.0
Q ss_pred CccEEEeccCc
Q 039944 30 SLKKLQICDCY 40 (348)
Q Consensus 30 ~L~~L~l~~~~ 40 (348)
+|+.|+++++.
T Consensus 3 ~L~~L~L~~Nk 13 (26)
T smart00365 3 NLEELDLSQNK 13 (26)
T ss_pred ccCEEECCCCc
Confidence 45555555554
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=23.42 E-value=56 Score=17.11 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=6.6
Q ss_pred CccEEEeccCc
Q 039944 30 SLKKLQICDCY 40 (348)
Q Consensus 30 ~L~~L~l~~~~ 40 (348)
+|++|+|++|.
T Consensus 3 ~L~~LdL~~N~ 13 (28)
T smart00368 3 SLRELDLSNNK 13 (28)
T ss_pred ccCEEECCCCC
Confidence 46666666655
Done!