Query 039944
Match_columns 348
No_of_seqs 164 out of 2139
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 05:09:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id5_A Lingo-1, leucine rich r 99.9 7.9E-23 2.7E-27 192.3 21.0 278 6-313 32-331 (477)
2 4fmz_A Internalin; leucine ric 99.9 1.3E-22 4.4E-27 182.9 20.9 291 4-343 42-345 (347)
3 3rgz_A Protein brassinosteroid 99.9 1.2E-23 4.1E-28 208.8 15.0 306 7-337 369-766 (768)
4 2id5_A Lingo-1, leucine rich r 99.9 4.4E-22 1.5E-26 187.2 24.5 302 9-346 14-335 (477)
5 3rgz_A Protein brassinosteroid 99.9 1.3E-22 4.6E-27 201.3 20.0 320 5-345 293-718 (768)
6 3t6q_A CD180 antigen; protein- 99.9 2E-21 6.7E-26 188.1 26.8 61 2-73 53-115 (606)
7 3v47_A TOLL-like receptor 5B a 99.9 5E-22 1.7E-26 185.6 20.0 280 6-313 30-406 (455)
8 4fmz_A Internalin; leucine ric 99.9 1.1E-21 3.9E-26 176.7 21.2 271 2-313 62-344 (347)
9 3t6q_A CD180 antigen; protein- 99.9 1.8E-21 6.1E-26 188.3 23.9 203 97-313 349-558 (606)
10 3o6n_A APL1; leucine-rich repe 99.9 1.5E-21 5E-26 178.9 21.6 272 5-313 44-350 (390)
11 4eco_A Uncharacterized protein 99.9 1.9E-22 6.4E-27 196.1 16.2 62 2-74 202-284 (636)
12 3v47_A TOLL-like receptor 5B a 99.9 1E-21 3.5E-26 183.5 20.0 302 10-346 14-410 (455)
13 4fcg_A Uncharacterized protein 99.9 1.8E-21 6.1E-26 174.0 19.7 222 28-288 80-310 (328)
14 1o6v_A Internalin A; bacterial 99.9 1.6E-20 5.4E-25 176.0 26.0 268 4-313 66-364 (466)
15 2z7x_B TOLL-like receptor 1, v 99.9 7.3E-21 2.5E-25 180.7 23.7 134 168-313 321-479 (520)
16 3vq2_A TLR4, TOLL-like recepto 99.9 3.3E-21 1.1E-25 186.5 21.6 268 3-313 282-556 (606)
17 2z81_A CD282 antigen, TOLL-lik 99.9 6.3E-21 2.1E-25 182.3 22.5 159 169-346 332-512 (549)
18 4eco_A Uncharacterized protein 99.9 1.2E-21 4.1E-26 190.4 17.1 279 4-313 247-598 (636)
19 4ecn_A Leucine-rich repeat pro 99.9 3.6E-21 1.2E-25 191.2 20.4 286 3-314 488-839 (876)
20 4ecn_A Leucine-rich repeat pro 99.9 6.7E-21 2.3E-25 189.3 22.4 312 2-343 444-818 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-20 5.3E-25 180.2 23.6 150 147-313 353-508 (562)
22 2z7x_B TOLL-like receptor 1, v 99.9 2.6E-20 8.9E-25 176.9 24.5 136 192-346 321-483 (520)
23 3oja_B Anopheles plasmodium-re 99.9 8.5E-21 2.9E-25 183.2 21.2 271 6-313 51-356 (597)
24 1o6v_A Internalin A; bacterial 99.9 3.7E-20 1.3E-24 173.5 24.7 266 5-313 45-342 (466)
25 3vq2_A TLR4, TOLL-like recepto 99.9 2.3E-20 8E-25 180.5 23.8 57 167-232 303-359 (606)
26 1xku_A Decorin; proteoglycan, 99.9 2.8E-20 9.7E-25 166.4 22.4 286 7-341 32-329 (330)
27 2z63_A TOLL-like receptor 4, v 99.9 1.6E-20 5.4E-25 180.3 21.6 114 219-346 417-533 (570)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.4E-20 2.9E-24 175.1 26.4 161 168-346 350-512 (562)
29 4fcg_A Uncharacterized protein 99.9 7.2E-21 2.5E-25 170.1 17.6 221 5-264 80-310 (328)
30 1ziw_A TOLL-like receptor 3; i 99.9 4.8E-20 1.6E-24 180.7 24.7 204 101-312 383-594 (680)
31 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-20 5.3E-25 175.3 18.7 200 4-241 40-249 (457)
32 1ogq_A PGIP-2, polygalacturona 99.9 2E-21 6.7E-26 172.7 11.4 251 29-315 50-304 (313)
33 2z80_A TOLL-like receptor 2, v 99.8 7.3E-20 2.5E-24 165.3 20.5 272 5-313 30-312 (353)
34 2ft3_A Biglycan; proteoglycan, 99.8 6.9E-20 2.4E-24 164.1 20.1 286 7-341 34-330 (332)
35 1xku_A Decorin; proteoglycan, 99.8 2E-19 6.9E-24 160.9 21.8 263 6-312 52-329 (330)
36 3j0a_A TOLL-like receptor 5; m 99.8 3E-19 1E-23 179.0 25.4 33 101-133 125-158 (844)
37 1ziw_A TOLL-like receptor 3; i 99.8 2.3E-19 7.7E-24 175.9 24.0 263 28-314 328-621 (680)
38 2ft3_A Biglycan; proteoglycan, 99.8 2E-19 6.7E-24 161.1 20.2 264 5-313 53-331 (332)
39 3bz5_A Internalin-J, INLJ; leu 99.8 3.1E-19 1.1E-23 166.5 22.0 264 2-313 60-350 (457)
40 3o6n_A APL1; leucine-rich repe 99.8 2.5E-19 8.7E-24 164.0 20.8 268 28-345 44-353 (390)
41 3zyj_A Leucine-rich repeat-con 99.8 4.7E-19 1.6E-23 164.8 22.3 241 9-290 46-290 (440)
42 2z81_A CD282 antigen, TOLL-lik 99.8 5.4E-19 1.9E-23 168.9 22.5 145 145-313 359-508 (549)
43 3j0a_A TOLL-like receptor 5; m 99.8 9.5E-19 3.2E-23 175.4 25.2 153 6-181 24-184 (844)
44 1ogq_A PGIP-2, polygalacturona 99.8 3.6E-20 1.2E-24 164.5 12.9 251 6-296 50-308 (313)
45 2z63_A TOLL-like receptor 4, v 99.8 3.4E-19 1.2E-23 171.0 20.3 175 121-313 345-529 (570)
46 3zyi_A Leucine-rich repeat-con 99.8 1E-18 3.5E-23 163.1 23.0 241 9-290 57-301 (452)
47 3oja_B Anopheles plasmodium-re 99.8 1.2E-18 4.1E-23 168.2 20.5 269 28-345 50-359 (597)
48 2z66_A Variable lymphocyte rec 99.8 6.8E-19 2.3E-23 155.7 16.6 241 10-313 11-259 (306)
49 4g8a_A TOLL-like receptor 4; l 99.8 7.5E-18 2.6E-22 163.4 24.8 157 144-313 417-578 (635)
50 1jl5_A Outer protein YOPM; leu 99.8 1.3E-18 4.4E-23 162.2 17.5 154 64-241 92-253 (454)
51 3zyj_A Leucine-rich repeat-con 99.8 1.1E-17 3.8E-22 155.5 22.7 241 30-313 44-290 (440)
52 2z80_A TOLL-like receptor 2, v 99.8 6.7E-19 2.3E-23 159.0 14.0 249 6-290 52-312 (353)
53 3g06_A SSPH2 (leucine-rich rep 99.8 2.4E-17 8.3E-22 158.6 25.6 246 7-313 41-295 (622)
54 3zyi_A Leucine-rich repeat-con 99.8 1.2E-17 4.2E-22 155.8 22.6 239 31-313 56-301 (452)
55 1jl5_A Outer protein YOPM; leu 99.8 6.3E-17 2.1E-21 150.8 26.8 219 64-313 132-368 (454)
56 2z66_A Variable lymphocyte rec 99.8 7.4E-18 2.5E-22 149.0 18.6 223 100-346 29-263 (306)
57 2xwt_C Thyrotropin receptor; s 99.8 4.5E-18 1.5E-22 145.0 16.6 201 98-315 30-239 (239)
58 2xwt_C Thyrotropin receptor; s 99.8 1.1E-17 3.8E-22 142.6 17.2 196 16-242 20-222 (239)
59 1ozn_A Reticulon 4 receptor; N 99.8 4.2E-18 1.4E-22 149.1 14.7 221 9-268 14-238 (285)
60 3o53_A Protein LRIM1, AGAP0063 99.8 1.3E-19 4.4E-24 161.2 4.6 152 122-291 119-274 (317)
61 3g06_A SSPH2 (leucine-rich rep 99.8 5.3E-17 1.8E-21 156.2 22.7 226 6-290 61-295 (622)
62 1ozn_A Reticulon 4 receptor; N 99.8 2.4E-17 8.3E-22 144.2 18.2 179 119-313 52-236 (285)
63 4ay9_X Follicle-stimulating ho 99.8 6.7E-17 2.3E-21 145.7 19.5 240 9-288 12-255 (350)
64 4g8a_A TOLL-like receptor 4; l 99.7 2.3E-16 8E-21 152.9 24.6 113 220-346 466-582 (635)
65 3oja_A Leucine-rich immune mol 99.7 9.7E-18 3.3E-22 157.7 10.3 168 101-287 101-270 (487)
66 3o53_A Protein LRIM1, AGAP0063 99.7 2.1E-17 7.2E-22 146.9 11.7 213 28-290 33-248 (317)
67 1p9a_G Platelet glycoprotein I 99.7 6.6E-16 2.3E-20 135.4 18.6 131 101-242 57-189 (290)
68 1p9a_G Platelet glycoprotein I 99.7 1.2E-15 4E-20 133.8 17.5 200 57-290 6-206 (290)
69 1wwl_A Monocyte differentiatio 99.7 1E-17 3.5E-22 148.6 3.5 201 98-313 95-307 (312)
70 3oja_A Leucine-rich immune mol 99.7 2.5E-16 8.7E-21 148.0 13.1 214 28-290 33-248 (487)
71 1wwl_A Monocyte differentiatio 99.7 2.9E-16 1E-20 139.2 10.7 207 121-346 93-311 (312)
72 4ay9_X Follicle-stimulating ho 99.7 7.8E-15 2.7E-19 132.1 20.1 241 32-313 12-257 (350)
73 2z62_A TOLL-like receptor 4, v 99.7 1.4E-15 4.8E-20 132.3 14.7 53 227-289 181-234 (276)
74 1h6u_A Internalin H; cell adhe 99.7 1.6E-15 5.5E-20 134.1 15.3 197 58-297 38-234 (308)
75 2z62_A TOLL-like receptor 4, v 99.7 1.7E-15 6E-20 131.7 15.3 196 98-312 27-234 (276)
76 2o6q_A Variable lymphocyte rec 99.6 9.6E-15 3.3E-19 126.6 19.0 173 101-290 39-216 (270)
77 2o6q_A Variable lymphocyte rec 99.6 1.3E-14 4.3E-19 125.9 19.4 131 120-265 82-215 (270)
78 1h6u_A Internalin H; cell adhe 99.6 4.1E-15 1.4E-19 131.5 14.1 195 28-273 40-234 (308)
79 2ast_B S-phase kinase-associat 99.6 1.7E-16 5.8E-21 142.0 4.9 244 29-313 47-304 (336)
80 3ogk_B Coronatine-insensitive 99.6 7.3E-17 2.5E-21 155.5 1.6 287 3-314 70-448 (592)
81 4glp_A Monocyte differentiatio 99.6 3.8E-15 1.3E-19 131.9 12.1 204 98-313 91-305 (310)
82 3ogk_B Coronatine-insensitive 99.6 1.4E-16 4.8E-21 153.5 3.1 202 101-313 295-524 (592)
83 3rfs_A Internalin B, repeat mo 99.6 1.2E-14 4.1E-19 126.2 14.2 206 28-281 40-248 (272)
84 2ast_B S-phase kinase-associat 99.6 1.3E-16 4.5E-21 142.8 0.8 201 101-312 72-282 (336)
85 1z7x_W Ribonuclease inhibitor; 99.6 1.4E-17 4.8E-22 155.6 -5.8 215 4-232 26-293 (461)
86 3rfs_A Internalin B, repeat mo 99.6 3.2E-15 1.1E-19 129.9 9.4 220 28-297 18-240 (272)
87 3m19_A Variable lymphocyte rec 99.6 1.3E-13 4.4E-18 118.2 16.8 170 125-313 16-190 (251)
88 4glp_A Monocyte differentiatio 99.6 2.1E-14 7.2E-19 127.1 11.6 201 64-290 92-305 (310)
89 2p1m_B Transport inhibitor res 99.5 4E-16 1.4E-20 150.3 -0.7 14 301-314 480-493 (594)
90 1z7x_W Ribonuclease inhibitor; 99.5 3.4E-17 1.2E-21 152.9 -8.0 111 5-134 2-124 (461)
91 2p1m_B Transport inhibitor res 99.5 5.5E-16 1.9E-20 149.4 -2.4 287 4-311 64-441 (594)
92 3m19_A Variable lymphocyte rec 99.5 4.4E-13 1.5E-17 114.8 15.7 172 64-265 15-189 (251)
93 1h6t_A Internalin B; cell adhe 99.5 1.2E-13 4.1E-18 121.0 12.1 172 97-296 45-216 (291)
94 1h6t_A Internalin B; cell adhe 99.5 1.5E-13 5.2E-18 120.4 12.4 174 58-272 43-216 (291)
95 2ca6_A RAN GTPase-activating p 99.5 3.9E-15 1.3E-19 135.9 2.1 238 28-290 31-314 (386)
96 4ezg_A Putative uncharacterize 99.5 7.4E-13 2.5E-17 109.1 13.9 147 148-313 45-192 (197)
97 4ezg_A Putative uncharacterize 99.5 4.8E-13 1.6E-17 110.2 12.2 149 122-289 43-191 (197)
98 1m9s_A Internalin B; cell inva 99.4 4.9E-13 1.7E-17 128.5 13.0 173 97-297 42-214 (605)
99 3cvr_A Invasion plasmid antige 99.4 4.2E-12 1.4E-16 120.8 16.6 152 101-289 82-240 (571)
100 3cvr_A Invasion plasmid antige 99.4 2.5E-12 8.6E-17 122.4 14.9 175 100-314 60-242 (571)
101 1m9s_A Internalin B; cell inva 99.4 8.8E-13 3E-17 126.7 11.6 192 30-272 22-213 (605)
102 2ca6_A RAN GTPase-activating p 99.4 7.1E-15 2.4E-19 134.2 -3.5 232 57-313 28-314 (386)
103 1xeu_A Internalin C; cellular 99.4 7.2E-13 2.5E-17 114.3 7.9 143 97-265 40-182 (263)
104 1xeu_A Internalin C; cellular 99.4 1.8E-12 6E-17 111.9 9.4 168 101-296 21-188 (263)
105 3goz_A Leucine-rich repeat-con 99.3 4.6E-14 1.6E-18 127.7 -1.5 178 101-289 82-294 (362)
106 3e6j_A Variable lymphocyte rec 99.3 1.9E-11 6.5E-16 103.1 14.7 146 126-289 22-169 (229)
107 2o6s_A Variable lymphocyte rec 99.3 1.3E-11 4.4E-16 102.4 13.1 162 9-204 10-174 (208)
108 3goz_A Leucine-rich repeat-con 99.3 3.6E-14 1.2E-18 128.4 -3.4 229 64-313 23-295 (362)
109 3e6j_A Variable lymphocyte rec 99.3 1.9E-11 6.4E-16 103.1 13.6 127 171-312 40-169 (229)
110 2v70_A SLIT-2, SLIT homolog 2 99.3 3.3E-11 1.1E-15 101.0 14.4 147 9-181 14-163 (220)
111 2o6s_A Variable lymphocyte rec 99.3 1E-11 3.4E-16 103.1 11.1 160 5-196 27-190 (208)
112 2v9t_B SLIT homolog 2 protein 99.3 5.2E-11 1.8E-15 99.8 13.3 15 166-180 75-89 (220)
113 2xot_A Amphoterin-induced prot 99.3 1.8E-11 6.2E-16 110.5 11.3 78 124-204 40-121 (361)
114 2v9t_B SLIT homolog 2 protein 99.3 7.8E-11 2.7E-15 98.7 14.2 102 101-205 58-162 (220)
115 2xot_A Amphoterin-induced prot 99.3 3.1E-11 1.1E-15 109.0 12.5 169 9-205 21-199 (361)
116 2v70_A SLIT-2, SLIT homolog 2 99.2 1.1E-10 3.9E-15 97.6 13.4 145 127-289 15-163 (220)
117 3sb4_A Hypothetical leucine ri 99.2 1.8E-11 6.1E-16 109.1 8.4 99 194-308 225-327 (329)
118 1dce_A Protein (RAB geranylger 99.2 1E-13 3.5E-18 132.3 -6.8 190 97-308 348-566 (567)
119 1dce_A Protein (RAB geranylger 99.2 1.5E-13 5.1E-18 131.2 -5.9 199 27-262 347-567 (567)
120 2ell_A Acidic leucine-rich nuc 99.2 3.7E-11 1.3E-15 96.1 9.0 129 100-232 25-156 (168)
121 2ell_A Acidic leucine-rich nuc 99.2 1.3E-10 4.5E-15 92.9 9.6 131 147-296 24-163 (168)
122 4fdw_A Leucine rich hypothetic 99.1 8.7E-09 3E-13 94.0 21.8 257 6-313 113-381 (401)
123 2je0_A Acidic leucine-rich nuc 99.1 7.9E-11 2.7E-15 92.2 5.8 101 101-204 19-122 (149)
124 2je0_A Acidic leucine-rich nuc 99.1 1.9E-10 6.5E-15 90.0 7.5 122 148-287 18-148 (149)
125 3sb4_A Hypothetical leucine ri 99.1 2.1E-09 7.1E-14 95.7 14.3 102 169-286 224-328 (329)
126 4fdw_A Leucine rich hypothetic 99.0 3.1E-08 1.1E-12 90.4 21.1 238 2-288 132-379 (401)
127 1a9n_A U2A', U2A'; complex (nu 99.0 6.3E-10 2.2E-14 89.6 7.7 128 170-314 18-152 (176)
128 4b8c_D Glucose-repressible alc 99.0 1.2E-10 4.1E-15 114.5 4.1 109 116-232 217-325 (727)
129 2wfh_A SLIT homolog 2 protein 99.0 3.9E-09 1.3E-13 86.3 11.3 123 126-265 13-136 (193)
130 2wfh_A SLIT homolog 2 protein 99.0 6.2E-09 2.1E-13 85.1 12.1 121 102-232 13-135 (193)
131 1a9n_A U2A', U2A'; complex (nu 99.0 9.8E-10 3.3E-14 88.5 6.9 129 144-290 16-151 (176)
132 4b8c_D Glucose-repressible alc 98.9 1.1E-09 3.6E-14 107.7 7.8 190 101-312 175-369 (727)
133 1w8a_A SLIT protein; signaling 98.9 6.9E-09 2.3E-13 84.8 10.8 123 126-266 11-137 (192)
134 2o6r_A Variable lymphocyte rec 98.9 1.7E-08 5.8E-13 81.2 11.7 123 9-157 10-134 (177)
135 1w8a_A SLIT protein; signaling 98.9 1.3E-08 4.6E-13 83.0 11.0 83 119-204 50-135 (192)
136 4fs7_A Uncharacterized protein 98.8 8E-07 2.7E-11 80.9 22.1 265 2-311 67-375 (394)
137 1ds9_A Outer arm dynein; leuci 98.8 3.2E-11 1.1E-15 99.3 -6.8 99 101-204 25-124 (198)
138 2o6r_A Variable lymphocyte rec 98.8 4.8E-08 1.7E-12 78.5 12.0 79 148-232 29-109 (177)
139 1ds9_A Outer arm dynein; leuci 98.7 3.3E-10 1.1E-14 93.2 -3.8 98 101-204 50-149 (198)
140 4gt6_A Cell surface protein; l 98.7 1.2E-05 4.2E-10 73.0 24.3 104 192-313 262-368 (394)
141 2r9u_A Variable lymphocyte rec 98.6 3.9E-07 1.3E-11 73.0 10.2 83 150-242 15-98 (174)
142 3g39_A Variable lymphocyte rec 98.5 4.4E-07 1.5E-11 72.4 10.2 100 149-264 11-111 (170)
143 2r9u_A Variable lymphocyte rec 98.5 5.4E-07 1.8E-11 72.2 10.2 98 126-232 15-114 (174)
144 3g39_A Variable lymphocyte rec 98.5 1.1E-06 3.7E-11 70.0 10.3 98 126-232 12-111 (170)
145 4gt6_A Cell surface protein; l 98.5 1.8E-05 6.1E-10 71.9 19.7 106 166-289 260-367 (394)
146 4fs7_A Uncharacterized protein 98.4 1.8E-05 6.1E-10 71.9 17.2 219 19-287 150-374 (394)
147 3e4g_A ATP synthase subunit S, 98.3 9E-07 3.1E-11 70.3 5.5 39 256-294 115-154 (176)
148 2ifg_A High affinity nerve gro 98.3 2.1E-06 7.2E-11 76.6 8.6 79 101-181 33-113 (347)
149 2ra8_A Uncharacterized protein 98.3 3.1E-07 1.1E-11 82.4 2.8 36 253-289 277-317 (362)
150 2ifg_A High affinity nerve gro 98.2 5.7E-06 1.9E-10 73.8 9.9 104 151-269 12-116 (347)
151 4h09_A Hypothetical leucine ri 98.2 7.8E-05 2.7E-09 67.2 17.4 40 5-48 45-86 (379)
152 3e4g_A ATP synthase subunit S, 98.2 1.7E-06 5.8E-11 68.7 5.3 88 147-239 61-154 (176)
153 2ra8_A Uncharacterized protein 98.1 5.8E-06 2E-10 74.1 7.4 158 97-269 138-320 (362)
154 4h09_A Hypothetical leucine ri 98.1 0.0012 4.1E-08 59.3 22.4 57 2-72 65-122 (379)
155 3un9_A NLR family member X1; l 97.9 4.5E-07 1.5E-11 81.8 -3.0 129 100-232 102-248 (372)
156 3un9_A NLR family member X1; l 97.9 4.2E-07 1.4E-11 82.1 -3.3 35 254-289 210-249 (372)
157 1io0_A Tropomodulin; LRR prote 96.7 0.00069 2.4E-08 54.4 2.7 11 302-312 151-161 (185)
158 1io0_A Tropomodulin; LRR prote 96.5 0.00044 1.5E-08 55.6 -0.1 15 119-133 32-46 (185)
159 3rw6_A Nuclear RNA export fact 96.3 0.0019 6.6E-08 54.9 2.7 79 120-201 167-257 (267)
160 3rw6_A Nuclear RNA export fact 96.1 0.0029 9.8E-08 53.8 3.0 13 169-181 194-206 (267)
161 3rfe_A Platelet glycoprotein I 94.3 0.081 2.8E-06 39.4 5.7 35 254-289 30-65 (130)
162 3rfe_A Platelet glycoprotein I 92.4 0.22 7.4E-06 37.1 5.4 53 10-74 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 81.6 0.81 2.8E-05 36.6 2.6 10 223-232 98-107 (197)
164 1pgv_A TMD-1, tropomodulin TMD 66.9 3 0.0001 33.3 2.4 11 222-232 156-166 (197)
165 2lz0_A Uncharacterized protein 44.1 25 0.00084 24.3 3.8 37 250-288 15-52 (100)
166 2lz0_A Uncharacterized protein 38.3 26 0.0009 24.2 3.1 45 18-73 7-53 (100)
No 1
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=7.9e-23 Score=192.25 Aligned_cols=278 Identities=19% Similarity=0.180 Sum_probs=179.3
Q ss_pred CcccEEeecCcccccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC
Q 039944 6 SSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN 83 (348)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (348)
++++.|+++++ .++.+++..+ +++|++|++++|. +..++.. .+..+. +|++|+++++ .+.. ++..
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~-------~~~~l~--~L~~L~L~~n-~l~~-~~~~ 98 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPG-------AFNNLF--NLRTLGLRSN-RLKL-IPLG 98 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTT-------TTTTCT--TCCEEECCSS-CCCS-CCTT
T ss_pred CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChh-------hhhCCc--cCCEEECCCC-cCCc-cCcc
Confidence 47888888874 6676765443 7888888888886 6666444 367777 8888888774 4555 5543
Q ss_pred C--CCCCcceeEe-------------ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCC-CCCCCC
Q 039944 84 E--LPATLESLEV-------------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPE-GGLPCA 147 (348)
Q Consensus 84 ~--~~~~L~~L~i-------------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~ 147 (348)
. ..++|++|.+ ..+++ |+.|++++|......+..+..+++|+.|++++| .+..++. .+..++
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~ 176 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLH 176 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCT
T ss_pred cccCCCCCCEEECCCCccccCChhHcccccc-CCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccC
Confidence 2 2344555544 22344 666666665533333445566666777776663 3434433 244556
Q ss_pred CccEEEEecCCCcCccc-ccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCcc
Q 039944 148 KLTRLTILDCKRLEALP-KGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLR 226 (348)
Q Consensus 148 ~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 226 (348)
+|+.|++.+|. +..++ ..+..+++|++|++++|.....++.......+|+.|+++++ .+..++. ..+..+++|+
T Consensus 177 ~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~---~~~~~l~~L~ 251 (477)
T 2id5_A 177 GLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPY---LAVRHLVYLR 251 (477)
T ss_dssp TCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCH---HHHTTCTTCC
T ss_pred CCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCH---HHhcCccccC
Confidence 67777776643 33333 35566777777777776666666655555567788888775 3444443 2467788888
Q ss_pred EEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccc-ccccccCCCcceEeccCCCCCCCCCCCCC--CCC
Q 039944 227 RLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERL-SSSIVDLQNLTELYLFGCPKLKYFPEKGL--PSS 303 (348)
Q Consensus 227 ~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~ 303 (348)
.|++++ +.+..++.. .+..+++|+.|+++++ .+..+ +..+..+++|+.|++++| .++.++...+ .++
T Consensus 252 ~L~Ls~--n~l~~~~~~------~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 252 FLNLSY--NPISTIEGS------MLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGN 321 (477)
T ss_dssp EEECCS--SCCCEECTT------SCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGG
T ss_pred eeECCC--CcCCccChh------hccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcc
Confidence 888887 456555542 2346778999999885 55544 557888899999999985 6777776433 578
Q ss_pred CcEEEEcCCc
Q 039944 304 LLELRISRCP 313 (348)
Q Consensus 304 L~~L~l~~c~ 313 (348)
|++|++++++
T Consensus 322 L~~L~l~~N~ 331 (477)
T 2id5_A 322 LETLILDSNP 331 (477)
T ss_dssp CCEEECCSSC
T ss_pred cCEEEccCCC
Confidence 9999998876
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.3e-22 Score=182.90 Aligned_cols=291 Identities=18% Similarity=0.180 Sum_probs=191.3
Q ss_pred CCCcccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC
Q 039944 4 TNSSLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN 83 (348)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (348)
.+++|+.|+++++ .++.++....+++|++|++++|. +..++. +..++ +|++|+++++ .+.+ ++..
T Consensus 42 ~l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~---------~~~l~--~L~~L~L~~n-~i~~-~~~~ 106 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGNQ-ITDISP---------LSNLV--KLTNLYIGTN-KITD-ISAL 106 (347)
T ss_dssp HHTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG---------GTTCT--TCCEEECCSS-CCCC-CGGG
T ss_pred hcccccEEEEeCC-ccccchhhhhcCCccEEEccCCc-cccchh---------hhcCC--cCCEEEccCC-cccC-chHH
Confidence 3567777777764 55666654557777777777775 565543 34555 7777777765 3554 5544
Q ss_pred CCCCCcceeEe-----------ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEE
Q 039944 84 ELPATLESLEV-----------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRL 152 (348)
Q Consensus 84 ~~~~~L~~L~i-----------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 152 (348)
..+++|++|.+ ..++. |+.|++++|.....++. +..+++|++|++++|. +..++. +..+++|+.|
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~~~~l~~-L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L 182 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISPLANLTK-MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSL 182 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGGGTTCTT-CCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEE
T ss_pred cCCCcCCEEECcCCcccCchhhccCCc-eeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEE
Confidence 44566666666 23455 88889888876666554 7788889999988853 444443 5567789999
Q ss_pred EEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecc
Q 039944 153 TILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 153 ~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 232 (348)
++++|. +..++. +..+++|+.++++++ .+..++ .+..+++|+.|++++|. +...+ .+..+++|+.|++++
T Consensus 183 ~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~~~~L~~L~l~~n~-l~~~~-----~~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 183 SLNYNQ-IEDISP-LASLTSLHYFTAYVN-QITDIT-PVANMTRLNSLKIGNNK-ITDLS-----PLANLSQLTWLEIGT 252 (347)
T ss_dssp ECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSSC-CCCCG-----GGTTCTTCCEEECCS
T ss_pred EccCCc-cccccc-ccCCCccceeecccC-CCCCCc-hhhcCCcCCEEEccCCc-cCCCc-----chhcCCCCCEEECCC
Confidence 988864 555544 677888888888876 455555 36778888888888853 44443 256788888888887
Q ss_pred cCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEc
Q 039944 233 CDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRIS 310 (348)
Q Consensus 233 ~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~ 310 (348)
+.+..++. . ..+++|++|++++| .++.++ .+..+++|+.|++++|+ ++..+...+ .++|++|+++
T Consensus 253 --n~l~~~~~-~-------~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 253 --NQISDINA-V-------KDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp --SCCCCCGG-G-------TTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECC
T ss_pred --CccCCChh-H-------hcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEcc
Confidence 35555543 2 36778888888885 566664 57778888888888864 443332212 5788888888
Q ss_pred CCchhHHHhhccCCccccCCCCcCEEEecceee
Q 039944 311 RCPLIAEKCRKDGGQYWDLLTHIPRVEIDWKSV 343 (348)
Q Consensus 311 ~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 343 (348)
+|+. +.. ..+..+.++..+.+.++.+
T Consensus 320 ~n~l-~~~------~~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 320 QNHI-TDI------RPLASLSKMDSADFANQVI 345 (347)
T ss_dssp SSSC-CCC------GGGGGCTTCSEESSSCC--
T ss_pred CCcc-ccc------cChhhhhccceeehhhhcc
Confidence 8862 211 1134456666666666543
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.2e-23 Score=208.81 Aligned_cols=306 Identities=17% Similarity=0.093 Sum_probs=156.8
Q ss_pred cccEEeecCcccccccCCC-CC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC
Q 039944 7 SLEILDIEKCHSLTYIAAV-QL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN 83 (348)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~-~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (348)
+|+.|+++++.-...++.. .. +++|++|++++|.....+|.. +..++ +|++|+++++. +...+|..
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~--------l~~l~--~L~~L~Ls~N~-l~~~~p~~ 437 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT--------LSNCS--ELVSLHLSFNY-LSGTIPSS 437 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG--------GGGCT--TCCEEECCSSE-EESCCCGG
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH--------HhcCC--CCCEEECcCCc-ccCcccHH
Confidence 6777777765333334433 22 566777777777632244443 55666 77777777653 33212221
Q ss_pred -CCCCCcceeEe-------------ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCc
Q 039944 84 -ELPATLESLEV-------------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKL 149 (348)
Q Consensus 84 -~~~~~L~~L~i-------------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L 149 (348)
...++|+.|.+ ..++. |+.|++++|.....+|..+..+++|++|++++|.....+|.++..+++|
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCC-ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 12234444443 12343 6666666665444556666666666666666654444555555566666
Q ss_pred cEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccc----------------------------------------
Q 039944 150 TRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEE---------------------------------------- 189 (348)
Q Consensus 150 ~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------------------------------------- 189 (348)
+.|++++|.....+|..+..+++|++|++++|.....+|.
T Consensus 517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 6666666654445666666666666666665532222221
Q ss_pred ------------------------------cCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCccc-
Q 039944 190 ------------------------------EDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMV- 238 (348)
Q Consensus 190 ------------------------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~- 238 (348)
.++.+++|+.|+++++.-...++ ..+..+++|+.|++++ +.+.
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~Ls~--N~l~g 670 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP----KEIGSMPYLFILNLGH--NDISG 670 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC----GGGGGCTTCCEEECCS--SCCCS
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC----HHHhccccCCEEeCcC--CccCC
Confidence 12223455556665543222333 2345566666666665 2333
Q ss_pred ccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCCCCCCcEEEEcCCchhH--
Q 039944 239 SFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGLPSSLLELRISRCPLIA-- 316 (348)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~-- 316 (348)
.+|... ..+++|+.|+++++.....+|..+.++++|++|++++|+--..+|..+.+.++....+.||+.|-
T Consensus 671 ~ip~~l-------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 671 SIPDEV-------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CCCGGG-------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred CCChHH-------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 455544 34556666666664433456666666666666666665444445554444444444455554321
Q ss_pred --HHhhccCCccccCCCCcCEEE
Q 039944 317 --EKCRKDGGQYWDLLTHIPRVE 337 (348)
Q Consensus 317 --~~~~~~~~~~~~~i~~~~~~~ 337 (348)
..|....+++|++++|.+.++
T Consensus 744 ~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 744 PLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp TSCCCCSCC--------------
T ss_pred CCcCCCCCccCCCCCCCCccccC
Confidence 157788899999999998754
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=4.4e-22 Score=187.16 Aligned_cols=302 Identities=15% Similarity=0.152 Sum_probs=172.7
Q ss_pred cEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC--CCC
Q 039944 9 EILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN--ELP 86 (348)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~ 86 (348)
+.++..+ ..++.+|. .++++++.|+++++. +..++.. .+..++ +|++|+++++ .+.. +... ...
T Consensus 14 ~~v~c~~-~~l~~ip~-~~~~~l~~L~L~~n~-l~~~~~~-------~~~~l~--~L~~L~L~~n-~i~~-~~~~~~~~l 79 (477)
T 2id5_A 14 RAVLCHR-KRFVAVPE-GIPTETRLLDLGKNR-IKTLNQD-------EFASFP--HLEELELNEN-IVSA-VEPGAFNNL 79 (477)
T ss_dssp TEEECCS-CCCSSCCS-CCCTTCSEEECCSSC-CCEECTT-------TTTTCT--TCCEEECTTS-CCCE-ECTTTTTTC
T ss_pred CEEEeCC-CCcCcCCC-CCCCCCcEEECCCCc-cceECHh-------HccCCC--CCCEEECCCC-ccCE-eChhhhhCC
Confidence 4566654 46777875 347899999999997 7887665 478887 9999999986 4665 4332 223
Q ss_pred CCcceeEe-------------ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEE
Q 039944 87 ATLESLEV-------------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLT 153 (348)
Q Consensus 87 ~~L~~L~i-------------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 153 (348)
++|++|.+ ..+++ |+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|+
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCC-CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 44555554 12233 55555555543333344455555555555555322222223444455566666
Q ss_pred EecCCCcCcccc-cccCCCCcceeEeccCCCCCccc-ccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEec
Q 039944 154 ILDCKRLEALPK-GMHNLTSLQYLRIGKGGALPSLE-EEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTIS 231 (348)
Q Consensus 154 l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 231 (348)
+++|. +..++. .+..+++|+.|+++++. +..++ ..+..+++|+.|++.++..+...+. ......+|+.|+++
T Consensus 159 l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 159 LEKCN-LTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTP----NCLYGLNLTSLSIT 232 (477)
T ss_dssp EESCC-CSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECT----TTTTTCCCSEEEEE
T ss_pred CCCCc-CcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCc----ccccCccccEEECc
Confidence 65542 333332 34555566666665542 22222 2344556666666666544444332 12223366666666
Q ss_pred ccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccccc-ccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEE
Q 039944 232 RCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELR 308 (348)
Q Consensus 232 ~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~ 308 (348)
+ +.+..++... +..+++|+.|+++++ .++.++. .+..+++|+.|++++| .++.++...+ .++|++|+
T Consensus 233 ~--n~l~~~~~~~------~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 233 H--CNLTAVPYLA------VRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp S--SCCCSCCHHH------HTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEE
T ss_pred C--CcccccCHHH------hcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEE
Confidence 6 3455555321 135677788888774 4555544 5677788888888874 5555544333 57888888
Q ss_pred EcCCchhHHHhhccCCccccCCCCcCEEEecceeeccC
Q 039944 309 ISRCPLIAEKCRKDGGQYWDLLTHIPRVEIDWKSVFGD 346 (348)
Q Consensus 309 l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 346 (348)
+++|.. +. .....+..+.++..+.+.++.+.|+
T Consensus 303 L~~N~l-~~----~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 303 VSGNQL-TT----LEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CCSSCC-SC----CCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CCCCcC-ce----eCHhHcCCCcccCEEEccCCCccCc
Confidence 888742 21 1112334566788888888877664
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.3e-22 Score=201.27 Aligned_cols=320 Identities=17% Similarity=0.092 Sum_probs=184.1
Q ss_pred CCcccEEeecCcccccccCCC-CCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC
Q 039944 5 NSSLEILDIEKCHSLTYIAAV-QLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN 83 (348)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (348)
+++|++|++++|.-.+.+|.. +.+++|++|++++|.....+|.. .+..++ +|++|+++++. +...+|..
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~-------~l~~l~--~L~~L~Ls~n~-l~~~~p~~ 362 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-------TLLKMR--GLKVLDLSFNE-FSGELPES 362 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH-------HHTTCT--TCCEEECCSSE-EEECCCTT
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH-------HHhcCC--CCCEEeCcCCc-cCccccHH
Confidence 477788888775322234432 22677777777777622255543 234444 55555555432 22102211
Q ss_pred --CC--------------------------CCCcceeEe-------------ccCCCCccEEEEcCCCCcccchhhhcCC
Q 039944 84 --EL--------------------------PATLESLEV-------------GNLPLSLKSLFVYGCSKLGSIAERLDNN 122 (348)
Q Consensus 84 --~~--------------------------~~~L~~L~i-------------~~l~~~L~~L~l~~~~~~~~~~~~~~~l 122 (348)
.. +++|++|.+ ..++. |+.|++++|.....+|..+..+
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l 441 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSL 441 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT-CCEEECCSSEEESCCCGGGGGC
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC-CCEEECcCCcccCcccHHHhcC
Confidence 01 234555544 22333 6666666655434455556666
Q ss_pred CccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeee
Q 039944 123 TSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDI 202 (348)
Q Consensus 123 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 202 (348)
++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|++|++++|.....+|..++.+++|+.|++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 66666666665444455555666667777777776555566666777777777777777544466666677777778877
Q ss_pred cCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhc------------------------------------
Q 039944 203 WGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKR------------------------------------ 246 (348)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~------------------------------------ 246 (348)
++|.-...++ ..+..+++|+.|++++ |.-...+|.+...
T Consensus 522 ~~N~l~~~~p----~~l~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 522 SNNSFSGNIP----AELGDCRSLIWLDLNT-NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp CSSCCEEECC----GGGGGCTTCCEEECCS-SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred CCCcccCcCC----HHHcCCCCCCEEECCC-CccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 7764433444 2466777888888877 4222233332210
Q ss_pred ---------------------------cCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCC-
Q 039944 247 ---------------------------LGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEK- 298 (348)
Q Consensus 247 ---------------------------~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~- 298 (348)
+...+..+++|+.|+++++.....+|..+.++++|+.|++++|.--..+|..
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 676 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence 0112233566778888875544577778888888888888885433355552
Q ss_pred CCCCCCcEEEEcCCchhHHHhhccCCccccCCCCcCEEEecceeecc
Q 039944 299 GLPSSLLELRISRCPLIAEKCRKDGGQYWDLLTHIPRVEIDWKSVFG 345 (348)
Q Consensus 299 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 345 (348)
+-.++|+.|++++|..-. ...+.+..+..+..+.+.++.+.|
T Consensus 677 ~~L~~L~~LdLs~N~l~g-----~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 677 GDLRGLNILDLSSNKLDG-----RIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp GGCTTCCEEECCSSCCEE-----CCCGGGGGCCCCSEEECCSSEEEE
T ss_pred hCCCCCCEEECCCCcccC-----cCChHHhCCCCCCEEECcCCcccc
Confidence 225778888888775221 222334455666666666555544
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=2e-21 Score=188.05 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=35.7
Q ss_pred CCCCCcccEEeecCcccccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCC
Q 039944 2 CDTNSSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISC 73 (348)
Q Consensus 2 ~~~~~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 73 (348)
|.++++|++|+++++ .++.+++..+ +++|++|++++|. +..++.. .+..++ +|++|+++++
T Consensus 53 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~--~L~~L~L~~n 115 (606)
T 3t6q_A 53 FSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAET-------ALSGPK--ALKHLFFIQT 115 (606)
T ss_dssp STTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTT-------TTSSCT--TCCEEECTTS
T ss_pred hccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChh-------hhcccc--cccEeecccc
Confidence 456677777777764 4555544333 6777777777765 4444333 245555 6666666553
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=5e-22 Score=185.61 Aligned_cols=280 Identities=18% Similarity=0.126 Sum_probs=155.8
Q ss_pred CcccEEeecCcccccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC
Q 039944 6 SSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN 83 (348)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (348)
++|++|+++++ .++.+++..+ +++|++|++++|.....++.. .+..++ +|++|+++++. +.. +...
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~-------~~~~l~--~L~~L~Ls~n~-l~~-~~~~ 97 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-------TFRGLS--SLIILKLDYNQ-FLQ-LETG 97 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTT-------TTTTCT--TCCEEECTTCT-TCE-ECTT
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcc-------cccccc--cCCEEeCCCCc-cCc-cChh
Confidence 46777777764 5555543322 677777777777633345444 356666 77777777653 443 3221
Q ss_pred --CCCCCcceeEe---------------ccCCCCccEEEEcCCCCcccchhh-hcCCCccceecccccccccccCCCCC-
Q 039944 84 --ELPATLESLEV---------------GNLPLSLKSLFVYGCSKLGSIAER-LDNNTSLETISIDSCGNLVSFPEGGL- 144 (348)
Q Consensus 84 --~~~~~L~~L~i---------------~~l~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~- 144 (348)
...++|++|.+ ..+++ |+.|++++|......+.. +..+++|++|++++|......+..+.
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS-LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT-CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCccc-CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 22345555554 12344 777777766543333433 56677777777766432222222211
Q ss_pred ---------------------------------CCCCccEEEEecCCCcCccccccc-----------------------
Q 039944 145 ---------------------------------PCAKLTRLTILDCKRLEALPKGMH----------------------- 168 (348)
Q Consensus 145 ---------------------------------~~~~L~~L~l~~~~~l~~~~~~l~----------------------- 168 (348)
.+++|++|++++|......|..+.
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence 224566666666532222211110
Q ss_pred ----------------CCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecc
Q 039944 169 ----------------NLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 169 ----------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 232 (348)
..++|++|++++|......+..++.+++|+.|+++++. +..... ..+..+++|+.|++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDD---NAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECT---TTTTTCTTCCEEECCS
T ss_pred chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccCh---hHhcCcccCCEEECCC
Confidence 12456666666553332334445667777777777743 333322 2456677777777776
Q ss_pred cCCccccccc-chhccCCCCCCCCCccEEEeccCCCcccc-ccccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEE
Q 039944 233 CDEDMVSFPL-EDKRLGTALPLPASLTSLWIEAFPNLERL-SSSIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELR 308 (348)
Q Consensus 233 ~c~~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~ 308 (348)
+.+..++. .. ..+++|++|++++| .++.+ |..+..+++|++|++++| .++.+|...+ .++|++|+
T Consensus 333 --N~l~~~~~~~~-------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 333 --NFLGSIDSRMF-------ENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp --SCCCEECGGGG-------TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred --CccCCcChhHh-------cCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEE
Confidence 34444432 22 35677778888774 44444 556777777888888773 5666666433 57778888
Q ss_pred EcCCc
Q 039944 309 ISRCP 313 (348)
Q Consensus 309 l~~c~ 313 (348)
+++|+
T Consensus 402 l~~N~ 406 (455)
T 3v47_A 402 LHTNP 406 (455)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 77654
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.1e-21 Score=176.68 Aligned_cols=271 Identities=18% Similarity=0.175 Sum_probs=204.4
Q ss_pred CCCCCcccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCcccccc
Q 039944 2 CDTNSSLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFS 81 (348)
Q Consensus 2 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 81 (348)
+..+++|++|++++| .++.++....+++|++|++++|. +..++. +..++ +|++|+++++. +.+ ++
T Consensus 62 ~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~---------~~~l~--~L~~L~l~~n~-i~~-~~ 126 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDISA---------LQNLT--NLRELYLNEDN-ISD-IS 126 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG---------GTTCT--TCSEEECTTSC-CCC-CG
T ss_pred hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCchH---------HcCCC--cCCEEECcCCc-ccC-ch
Confidence 356789999999986 67777775558999999999996 777652 56777 99999998864 555 55
Q ss_pred CCCCCCCcceeEe------------ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCc
Q 039944 82 KNELPATLESLEV------------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKL 149 (348)
Q Consensus 82 ~~~~~~~L~~L~i------------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L 149 (348)
.....++|+.|.+ ..++. |+.|++++|. +..++. +..+++|+.|++++| .+..++. +..+++|
T Consensus 127 ~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~-L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L 201 (347)
T 4fmz_A 127 PLANLTKMYSLNLGANHNLSDLSPLSNMTG-LNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSL 201 (347)
T ss_dssp GGTTCTTCCEEECTTCTTCCCCGGGTTCTT-CCEEECCSSC-CCCCGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTC
T ss_pred hhccCCceeEEECCCCCCcccccchhhCCC-CcEEEecCCC-cCCchh-hccCCCCCEEEccCC-ccccccc-ccCCCcc
Confidence 5555677888877 23455 9999999886 444443 778999999999985 4555554 5667899
Q ss_pred cEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEE
Q 039944 150 TRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLT 229 (348)
Q Consensus 150 ~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 229 (348)
+.|++++|. +..++. +..+++|++|++++| .+..++ .+..+++|+.|+++++ .+.... .+..+++|+.|+
T Consensus 202 ~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~-----~~~~l~~L~~L~ 271 (347)
T 4fmz_A 202 HYFTAYVNQ-ITDITP-VANMTRLNSLKIGNN-KITDLS-PLANLSQLTWLEIGTN-QISDIN-----AVKDLTKLKMLN 271 (347)
T ss_dssp CEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCG-----GGTTCTTCCEEE
T ss_pred ceeecccCC-CCCCch-hhcCCcCCEEEccCC-ccCCCc-chhcCCCCCEEECCCC-ccCCCh-----hHhcCCCcCEEE
Confidence 999999864 555543 778899999999987 566676 4888999999999986 455443 467889999999
Q ss_pred ecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCCCCCCcEEEE
Q 039944 230 ISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGLPSSLLELRI 309 (348)
Q Consensus 230 l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l 309 (348)
+++ +.+..++.. ..+++|+.|++++|......+..+..+++|+.|++++|+ ++.++.....++|++|++
T Consensus 272 l~~--n~l~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l 340 (347)
T 4fmz_A 272 VGS--NQISDISVL--------NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADF 340 (347)
T ss_dssp CCS--SCCCCCGGG--------GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESS
T ss_pred ccC--CccCCChhh--------cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeeh
Confidence 998 466666432 367889999999964434455578889999999999975 666655334789999999
Q ss_pred cCCc
Q 039944 310 SRCP 313 (348)
Q Consensus 310 ~~c~ 313 (348)
++|+
T Consensus 341 ~~N~ 344 (347)
T 4fmz_A 341 ANQV 344 (347)
T ss_dssp SCC-
T ss_pred hhhc
Confidence 9886
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.8e-21 Score=188.33 Aligned_cols=203 Identities=17% Similarity=0.060 Sum_probs=145.5
Q ss_pred CCCCccEEEEcCCCCcccc--hhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccc-cccCCCCc
Q 039944 97 LPLSLKSLFVYGCSKLGSI--AERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPK-GMHNLTSL 173 (348)
Q Consensus 97 l~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L 173 (348)
++. |+.|++++|...... +..+..+++|++|++++|......+..+..+++|+.|++++|......+. .+..+++|
T Consensus 349 l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 349 LEN-LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp CTT-CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred cCc-CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 455 889999887644333 55678889999999988654444456677788999999988754433343 36788999
Q ss_pred ceeEeccCCCCCcccccCCCCCCcCeeeecCCccchh-hhhccccccCCCCCccEEEecccCCcccccc-cchhccCCCC
Q 039944 174 QYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWK-SMIERGRGFHRFSSLRRLTISRCDEDMVSFP-LEDKRLGTAL 251 (348)
Q Consensus 174 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~-~~~~~~~~~~ 251 (348)
++|++++|......+..++.+++|+.|+++++.-... .+.. ..+..+++|+.|++++ | .+..++ ...
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~~l~~L~~L~Ls~-n-~l~~~~~~~~------- 496 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT--NSLQTLGRLEILVLSF-C-DLSSIDQHAF------- 496 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS--CGGGGCTTCCEEECTT-S-CCCEECTTTT-------
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc--hhhccCCCccEEECCC-C-ccCccChhhh-------
Confidence 9999998754444455677889999999998643221 1111 2467789999999998 4 555553 333
Q ss_pred CCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEcCCc
Q 039944 252 PLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRISRCP 313 (348)
Q Consensus 252 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 313 (348)
..+++|++|+++++......|..+.++++| .|++++| .++.++...+ .++|++|++++|+
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence 577899999999864444556688889999 9999985 5666665433 6889999999887
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.5e-21 Score=178.87 Aligned_cols=272 Identities=17% Similarity=0.127 Sum_probs=161.0
Q ss_pred CCcccEEeecCcccccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccC
Q 039944 5 NSSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSK 82 (348)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 82 (348)
+++++.|+++++ .++.+|...+ +++|++|++++|. +..++.. .+..++ +|++|+++++. +.. ++.
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~-------~~~~l~--~L~~L~L~~n~-l~~-~~~ 110 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY-------AFAYAH--TIQKLYMGFNA-IRY-LPP 110 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTT-------TTTTCT--TCCEEECCSSC-CCC-CCT
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChh-------hccCCC--CcCEEECCCCC-CCc-CCH
Confidence 467788888764 5677776433 7788888888876 6666654 366666 78888887753 554 433
Q ss_pred CC--CCCCcceeEe-------------ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCC
Q 039944 83 NE--LPATLESLEV-------------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCA 147 (348)
Q Consensus 83 ~~--~~~~L~~L~i-------------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 147 (348)
.. ..++|++|.+ ..+++ |+.|++++|......+..+..+++|++|++++| .+..++ ...++
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--~~~l~ 186 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIP 186 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC--GGGCT
T ss_pred HHhcCCCCCCEEECCCCccCcCCHHHhcCCCC-CcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc--ccccc
Confidence 21 2233444333 12233 566666555433323344555566666666553 222221 11122
Q ss_pred CccEEEEecCC------------------CcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccch
Q 039944 148 KLTRLTILDCK------------------RLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIW 209 (348)
Q Consensus 148 ~L~~L~l~~~~------------------~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 209 (348)
+|+.|++++|. .+..+|. ..+++|++|++++| .+...+ .+..+++|+.|+++++. +.
T Consensus 187 ~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~Ls~n~-l~ 261 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHN-NLTDTA-WLLNYPGLVEVDLSYNE-LE 261 (390)
T ss_dssp TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CC
T ss_pred ccceeecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCC-CCcccH-HHcCCCCccEEECCCCc-CC
Confidence 33333332211 1222221 12345666666665 344444 56667788888887753 44
Q ss_pred hhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCC
Q 039944 210 KSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGC 289 (348)
Q Consensus 210 ~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c 289 (348)
.... ..+..+++|+.|++++ +.+..++... ..+++|++|++++| .++.+|..+..+++|+.|++++|
T Consensus 262 ~~~~---~~~~~l~~L~~L~L~~--n~l~~~~~~~-------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 262 KIMY---HPFVKMQRLERLYISN--NRLVALNLYG-------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp EEES---GGGTTCSSCCEEECCS--SCCCEEECSS-------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred CcCh---hHccccccCCEEECCC--CcCcccCccc-------CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC
Confidence 3322 2567788888888887 5666666544 35678888888884 67778877888888888888885
Q ss_pred CCCCCCCCCCCCCCCcEEEEcCCc
Q 039944 290 PKLKYFPEKGLPSSLLELRISRCP 313 (348)
Q Consensus 290 ~~l~~l~~~~~~~~L~~L~l~~c~ 313 (348)
.++.++. ...++|++|++++++
T Consensus 329 -~i~~~~~-~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 329 -SIVTLKL-STHHTLKNLTLSHND 350 (390)
T ss_dssp -CCCCCCC-CTTCCCSEEECCSSC
T ss_pred -ccceeCc-hhhccCCEEEcCCCC
Confidence 4666654 335788999998876
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.9e-22 Score=196.05 Aligned_cols=62 Identities=8% Similarity=0.129 Sum_probs=35.9
Q ss_pred CCCCCcccEEeecCcccccc------------------cCCC-C--CCCCccEEEeccCccccccccccccccccccccc
Q 039944 2 CDTNSSLEILDIEKCHSLTY------------------IAAV-Q--LPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRY 60 (348)
Q Consensus 2 ~~~~~~L~~L~l~~~~~l~~------------------l~~~-~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 60 (348)
++++++|++|+++++ .++. +|.. + .+++|++|++++|.....+|.. +..+
T Consensus 202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~--------l~~l 272 (636)
T 4eco_A 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF--------LKAL 272 (636)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT--------TTTC
T ss_pred HhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH--------HhcC
Confidence 345667777777764 3444 5543 3 3666777777776644455543 4555
Q ss_pred cCCccceeeeeCCC
Q 039944 61 TSSLLEHLEIISCP 74 (348)
Q Consensus 61 ~~~~L~~L~l~~~~ 74 (348)
+ +|++|+++++.
T Consensus 273 ~--~L~~L~Ls~n~ 284 (636)
T 4eco_A 273 P--EMQLINVACNR 284 (636)
T ss_dssp S--SCCEEECTTCT
T ss_pred C--CCCEEECcCCC
Confidence 5 66666665543
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1e-21 Score=183.48 Aligned_cols=302 Identities=18% Similarity=0.171 Sum_probs=168.3
Q ss_pred EEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC--CCCC
Q 039944 10 ILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN--ELPA 87 (348)
Q Consensus 10 ~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~ 87 (348)
.++..+ ..++++|. .+++|++|+++++. +..++.. .+..++ +|++|+++++..... ++.. ...+
T Consensus 14 ~~~c~~-~~l~~lp~--l~~~l~~L~Ls~n~-i~~~~~~-------~~~~l~--~L~~L~L~~n~~~~~-i~~~~~~~l~ 79 (455)
T 3v47_A 14 NAICIN-RGLHQVPE--LPAHVNYVDLSLNS-IAELNET-------SFSRLQ--DLQFLKVEQQTPGLV-IRNNTFRGLS 79 (455)
T ss_dssp EEECCS-SCCSSCCC--CCTTCCEEECCSSC-CCEECTT-------TTSSCT--TCCEEECCCCSTTCE-ECTTTTTTCT
T ss_pred ccCcCC-CCcccCCC--CCCccCEEEecCCc-cCcCChh-------HhccCc--cccEEECcCCcccce-ECcccccccc
Confidence 455554 46778887 57899999999997 7777554 478888 999999998753323 4433 2224
Q ss_pred CcceeEe-------------ccCCCCccEEEEcCCCCcccchhh--hcCCCccceeccccccccccc-CCC-CCCCCCcc
Q 039944 88 TLESLEV-------------GNLPLSLKSLFVYGCSKLGSIAER--LDNNTSLETISIDSCGNLVSF-PEG-GLPCAKLT 150 (348)
Q Consensus 88 ~L~~L~i-------------~~l~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~-~~~-~~~~~~L~ 150 (348)
+|++|.+ ..+++ |+.|++++|.....++.. +..+++|++|++++|. +..+ |.. +..+++|+
T Consensus 80 ~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 80 SLIILKLDYNQFLQLETGAFNGLAN-LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFH 157 (455)
T ss_dssp TCCEEECTTCTTCEECTTTTTTCTT-CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCC
T ss_pred cCCEEeCCCCccCccChhhccCccc-CCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCccc
Confidence 4444444 12333 555555554422222222 4445555555555532 2222 222 33445555
Q ss_pred EEEEecCCCcCcccccccC----------------------------------CCCcceeEeccCCCCCcccccC-----
Q 039944 151 RLTILDCKRLEALPKGMHN----------------------------------LTSLQYLRIGKGGALPSLEEED----- 191 (348)
Q Consensus 151 ~L~l~~~~~l~~~~~~l~~----------------------------------l~~L~~L~l~~~~~~~~~~~~~----- 191 (348)
+|++++|......+..+.. +++|++|++++|......+..+
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 5555554322111211111 1334444444331110000000
Q ss_pred ----------------------------------CCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcc
Q 039944 192 ----------------------------------GLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDM 237 (348)
Q Consensus 192 ----------------------------------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l 237 (348)
...++|+.++++++. +..... ..+..+++|+.|++++ +.+
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~Ls~--n~l 311 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLK---SVFSHFTDLEQLTLAQ--NEI 311 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECT---TTTTTCTTCCEEECTT--SCC
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccch---hhcccCCCCCEEECCC--Ccc
Confidence 001234444444432 222111 2356677888888887 455
Q ss_pred cccccchhccCCCCCCCCCccEEEeccCCCcccc-ccccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEcCCch
Q 039944 238 VSFPLEDKRLGTALPLPASLTSLWIEAFPNLERL-SSSIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRISRCPL 314 (348)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~ 314 (348)
..++.. ++..+++|++|++++| .++.+ +..+..+++|++|++++| .++.++...+ .++|++|++++|.-
T Consensus 312 ~~~~~~------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 312 NKIDDN------AFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp CEECTT------TTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cccChh------HhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCcc
Confidence 544331 1246788999999985 55655 557788999999999986 5666644333 68999999998752
Q ss_pred hHHHhhccCCccccCCCCcCEEEecceeeccC
Q 039944 315 IAEKCRKDGGQYWDLLTHIPRVEIDWKSVFGD 346 (348)
Q Consensus 315 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 346 (348)
+ ....+.+..+.++..+.+.++.+.|+
T Consensus 384 -~----~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 384 -K----SVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp -S----CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -c----cCCHhHhccCCcccEEEccCCCcccC
Confidence 2 12223345678899999999888775
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.8e-21 Score=174.04 Aligned_cols=222 Identities=21% Similarity=0.278 Sum_probs=146.1
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEc
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVY 107 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~ 107 (348)
..+++.|+++++. +..+|.. +..++ +|++|+++++. +.. +|. .+ ..++. |+.|+++
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~--------l~~l~--~L~~L~L~~n~-l~~-lp~-----~~-----~~l~~-L~~L~Ls 135 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQ--------AFRLS--HLQHMTIDAAG-LME-LPD-----TM-----QQFAG-LETLTLA 135 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSC--------GGGGT--TCSEEEEESSC-CCC-CCS-----CG-----GGGTT-CSEEEEE
T ss_pred ccceeEEEccCCC-chhcChh--------hhhCC--CCCEEECCCCC-ccc-hhH-----HH-----hccCC-CCEEECC
Confidence 3677788888776 6777765 45566 78888887753 433 442 22 23355 7888887
Q ss_pred CCCCcccchhhhcCCCccceecccccccccccCCCCCC---------CCCccEEEEecCCCcCcccccccCCCCcceeEe
Q 039944 108 GCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLP---------CAKLTRLTILDCKRLEALPKGMHNLTSLQYLRI 178 (348)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~---------~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 178 (348)
+|. +..+|..+..+++|++|++++|.....+|..+.. +++|+.|++++| .+..+|..+..+++|++|++
T Consensus 136 ~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 136 RNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKI 213 (328)
T ss_dssp SCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEE
T ss_pred CCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEc
Confidence 765 4466777777888888888777777777665543 667777777775 45566666777777777777
Q ss_pred ccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCcc
Q 039944 179 GKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLT 258 (348)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~ 258 (348)
++| .+..+|..++.+++|+.|++++|......+ ..+..+++|+.|++++ |.....+|... ..+++|+
T Consensus 214 ~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p----~~~~~l~~L~~L~L~~-n~~~~~~p~~~-------~~l~~L~ 280 (328)
T 4fcg_A 214 RNS-PLSALGPAIHHLPKLEELDLRGCTALRNYP----PIFGGRAPLKRLILKD-CSNLLTLPLDI-------HRLTQLE 280 (328)
T ss_dssp ESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCC----CCTTCCCCCCEEECTT-CTTCCBCCTTG-------GGCTTCC
T ss_pred cCC-CCCcCchhhccCCCCCEEECcCCcchhhhH----HHhcCCCCCCEEECCC-CCchhhcchhh-------hcCCCCC
Confidence 766 445555556666777777777765555444 2456667777777776 55555666554 3556677
Q ss_pred EEEeccCCCccccccccccCCCcceEeccC
Q 039944 259 SLWIEAFPNLERLSSSIVDLQNLTELYLFG 288 (348)
Q Consensus 259 ~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~ 288 (348)
+|++++|+..+.+|..+.++++|+.+++..
T Consensus 281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 777777666667777777777777776654
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.6e-20 Score=176.02 Aligned_cols=268 Identities=18% Similarity=0.188 Sum_probs=137.6
Q ss_pred CCCcccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCC---------
Q 039944 4 TNSSLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCP--------- 74 (348)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------- 74 (348)
.+++|++|+++++ .++.+++...+++|++|++++|. +..++. +..+. +|++|+++++.
T Consensus 66 ~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------~~~l~--~L~~L~L~~n~l~~~~~~~~ 132 (466)
T 1o6v_A 66 YLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP---------LANLT--NLTGLTLFNNQITDIDPLKN 132 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG---------GTTCT--TCCEEECCSSCCCCCGGGTT
T ss_pred hhcCCCEEECCCC-ccCCchhhhccccCCEEECCCCc-cccChh---------hcCCC--CCCEEECCCCCCCCChHHcC
Confidence 4566667777654 45555543335666666666664 444332 23333 44444444431
Q ss_pred ------------CccccccCCCCCCCcceeEe----------ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccc
Q 039944 75 ------------SLTCIFSKNELPATLESLEV----------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDS 132 (348)
Q Consensus 75 ------------~l~~~~~~~~~~~~L~~L~i----------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 132 (348)
.+.+ ++.....++|+.|.+ ..++. |+.|++++|. +..++ .+..+++|++|++++
T Consensus 133 l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 133 LTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTT-LERLDISSNK-VSDIS-VLAKLTNLESLIATN 208 (466)
T ss_dssp CTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTT-CCEEECCSSC-CCCCG-GGGGCTTCSEEECCS
T ss_pred CCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCC-CCEEECcCCc-CCCCh-hhccCCCCCEEEecC
Confidence 1222 222222234444433 22343 6666666554 33332 255566666666665
Q ss_pred cccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhh
Q 039944 133 CGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSM 212 (348)
Q Consensus 133 ~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 212 (348)
|. +..++. ...+++|+.|++++|. +..+ +.+..+++|++|++++| .+..++ .+..+++|+.|+++++ .+...+
T Consensus 209 n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~ 281 (466)
T 1o6v_A 209 NQ-ISDITP-LGILTNLDELSLNGNQ-LKDI-GTLASLTNLTDLDLANN-QISNLA-PLSGLTKLTELKLGAN-QISNIS 281 (466)
T ss_dssp SC-CCCCGG-GGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCG-GGTTCTTCSEEECCSS-CCCCCG
T ss_pred Cc-cccccc-ccccCCCCEEECCCCC-cccc-hhhhcCCCCCEEECCCC-ccccch-hhhcCCCCCEEECCCC-ccCccc
Confidence 42 222222 3345566666666643 3444 24556666666666665 344444 3556666666666664 233333
Q ss_pred hccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCC
Q 039944 213 IERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKL 292 (348)
Q Consensus 213 ~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l 292 (348)
.+..+++|+.|++++ +.+..++.. ..+++|+.|++++| .+..++. +..+++|+.|++++| .+
T Consensus 282 -----~~~~l~~L~~L~L~~--n~l~~~~~~--------~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l 343 (466)
T 1o6v_A 282 -----PLAGLTALTNLELNE--NQLEDISPI--------SNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KV 343 (466)
T ss_dssp -----GGTTCTTCSEEECCS--SCCSCCGGG--------GGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CC
T ss_pred -----cccCCCccCeEEcCC--CcccCchhh--------cCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-cc
Confidence 245566666666666 344444331 24556666666664 3444433 556666666666664 44
Q ss_pred CCCCCCCCCCCCcEEEEcCCc
Q 039944 293 KYFPEKGLPSSLLELRISRCP 313 (348)
Q Consensus 293 ~~l~~~~~~~~L~~L~l~~c~ 313 (348)
+.++...-.++|++|++++|.
T Consensus 344 ~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 344 SDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CCCGGGTTCTTCCEEECCSSC
T ss_pred CCchhhccCCCCCEEeCCCCc
Confidence 444432235666666666664
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=7.3e-21 Score=180.74 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=70.2
Q ss_pred cCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccc-cccchhc
Q 039944 168 HNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVS-FPLEDKR 246 (348)
Q Consensus 168 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~-~~~~~~~ 246 (348)
..+++|++|++++|.-....|..++.+++|+.|+++++. +..++.. ...+..+++|+.|++++ +.+.. +|...
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~-~~~~~~l~~L~~L~Ls~--N~l~~~l~~~~-- 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKI-AEMTTQMKSLQQLDISQ--NSVSYDEKKGD-- 394 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHH-HHHHTTCTTCCEEECCS--SCCBCCGGGCS--
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccc-hHHHhhCCCCCEEECCC--CcCCcccccch--
Confidence 345666666666653333344455566666666666643 2221100 01245556666666665 23333 33321
Q ss_pred cCCCCCCC----------------------CCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCC--CC
Q 039944 247 LGTALPLP----------------------ASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGL--PS 302 (348)
Q Consensus 247 ~~~~~~~~----------------------~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~ 302 (348)
+..+ ++|+.|++++| .++.+|..+..+++|+.|++++| .++.+|...+ .+
T Consensus 395 ----~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~ 468 (520)
T 2z7x_B 395 ----CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLT 468 (520)
T ss_dssp ----CCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred ----hccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCC
Confidence 0122 45666666663 55566665556667777777664 5556665322 45
Q ss_pred CCcEEEEcCCc
Q 039944 303 SLLELRISRCP 313 (348)
Q Consensus 303 ~L~~L~l~~c~ 313 (348)
+|++|++++|+
T Consensus 469 ~L~~L~l~~N~ 479 (520)
T 2z7x_B 469 SLQKIWLHTNP 479 (520)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEECcCCC
Confidence 66777766654
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=3.3e-21 Score=186.48 Aligned_cols=268 Identities=16% Similarity=0.115 Sum_probs=192.6
Q ss_pred CCCCcccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccC
Q 039944 3 DTNSSLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSK 82 (348)
Q Consensus 3 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 82 (348)
..+++|+.|+++++ .++.+|....+++|++|++++|. +..+| . + .+. +|++|++.++..... ++.
T Consensus 282 ~~l~~L~~L~l~~~-~~~~l~~l~~~~~L~~L~l~~n~-l~~lp-~--------~-~l~--~L~~L~l~~n~~~~~-~~~ 346 (606)
T 3vq2_A 282 HCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQ-LKQFP-T--------L-DLP--FLKSLTLTMNKGSIS-FKK 346 (606)
T ss_dssp GGGTTCSEEEEESC-CCCCCCCCCTTCCCSEEEEESCC-CSSCC-C--------C-CCS--SCCEEEEESCSSCEE-CCC
T ss_pred ccCCCCCEEEecCc-cchhhhhccccccCCEEEccccc-Ccccc-c--------C-CCC--ccceeeccCCcCccc-hhh
Confidence 34566666666654 44555533335666677776666 45555 2 2 444 666777766543332 221
Q ss_pred CCCCCCcceeEeccCCCCccEEEEcCCCCcccc---hhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCC
Q 039944 83 NELPATLESLEVGNLPLSLKSLFVYGCSKLGSI---AERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKR 159 (348)
Q Consensus 83 ~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 159 (348)
..+++ |+.|++++|. +... +..+..+++|++|++++| .+..+|..+..+++|+.|++++|..
T Consensus 347 ------------~~l~~-L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l 411 (606)
T 3vq2_A 347 ------------VALPS-LSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTL 411 (606)
T ss_dssp ------------CCCTT-CCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEE
T ss_pred ------------ccCCC-CCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCcc
Confidence 33466 9999999886 4333 677889999999999985 4777888888899999999999764
Q ss_pred cCccc-ccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCccc
Q 039944 160 LEALP-KGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMV 238 (348)
Q Consensus 160 l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~ 238 (348)
....| ..+..+++|++|++++|......+..++.+++|+.|+++++.-...... ..+..+++|+.|++++ | .+.
T Consensus 412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~Ls~-n-~l~ 486 (606)
T 3vq2_A 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS---NVFANTTNLTFLDLSK-C-QLE 486 (606)
T ss_dssp ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTT-S-CCC
T ss_pred CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH---HhhccCCCCCEEECCC-C-cCC
Confidence 44444 4678899999999999865555666788899999999999653332222 3578899999999998 4 555
Q ss_pred cccc-chhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCC--CCCCCCcEEEEcCCc
Q 039944 239 SFPL-EDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEK--GLPSSLLELRISRCP 313 (348)
Q Consensus 239 ~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~ 313 (348)
.++. .. ..+++|++|++++|......|..+..+++|+.|++++| .++.+|.. .++.+|++|++++|+
T Consensus 487 ~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 487 QISWGVF-------DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EECTTTT-------TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred ccChhhh-------cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 5543 33 57889999999996443444778999999999999996 58888874 223479999999976
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=6.3e-21 Score=182.34 Aligned_cols=159 Identities=23% Similarity=0.264 Sum_probs=82.7
Q ss_pred CCCCcceeEeccCCCCCccc---ccCCCCCCcCeeeecCCccchhhhh-ccccccCCCCCccEEEecccCCcccccccch
Q 039944 169 NLTSLQYLRIGKGGALPSLE---EEDGLPTNLQSLDIWGNMEIWKSMI-ERGRGFHRFSSLRRLTISRCDEDMVSFPLED 244 (348)
Q Consensus 169 ~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~ 244 (348)
.+++|++|++++|.....++ ..++.+++|+.|++++| .++..+. . ..+..+++|+.|++++ +.+..+|...
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~~~l~~L~~L~Ls~--N~l~~lp~~~ 406 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTG--EILLTLKNLTSLDISR--NTFHPMPDSC 406 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHH--HHGGGCTTCCEEECTT--CCCCCCCSCC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccch--hhhhcCCCCCEEECCC--CCCccCChhh
Confidence 35555555555543222121 12345556666666664 2332221 0 1245566666666666 3555555433
Q ss_pred hccCCCCCCCCCccEEEeccCCCccccccc------------------cccCCCcceEeccCCCCCCCCCCCCCCCCCcE
Q 039944 245 KRLGTALPLPASLTSLWIEAFPNLERLSSS------------------IVDLQNLTELYLFGCPKLKYFPEKGLPSSLLE 306 (348)
Q Consensus 245 ~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~------------------~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 306 (348)
..+++|++|++++| .++.++.. ...+++|++|++++| .++.+|.....++|++
T Consensus 407 -------~~~~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~ 477 (549)
T 2z81_A 407 -------QWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLV 477 (549)
T ss_dssp -------CCCTTCCEEECTTS-CCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCE
T ss_pred -------cccccccEEECCCC-CcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCE
Confidence 24445555555553 33333221 124666777777764 5666666444667777
Q ss_pred EEEcCCchhHHHhhccCCccccCCCCcCEEEecceeeccC
Q 039944 307 LRISRCPLIAEKCRKDGGQYWDLLTHIPRVEIDWKSVFGD 346 (348)
Q Consensus 307 L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 346 (348)
|++++|.- +. ...+.+..+.++..+.+.++.+.|+
T Consensus 478 L~Ls~N~l-~~----~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 478 MKISRNQL-KS----VPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp EECCSSCC-CC----CCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred EecCCCcc-CC----cCHHHHhcCcccCEEEecCCCccCC
Confidence 77777632 21 2222345567777888877776654
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=1.2e-21 Score=190.38 Aligned_cols=279 Identities=18% Similarity=0.193 Sum_probs=153.2
Q ss_pred CCCcccEEeecCcccccccCCCC-CCCCccEEEeccCcccc--ccccccccccccccccc------cCCccceeeeeCCC
Q 039944 4 TNSSLEILDIEKCHSLTYIAAVQ-LPSSLKKLQICDCYNIR--TLTVEEGIQCSSSSRRY------TSSLLEHLEIISCP 74 (348)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~------~~~~L~~L~l~~~~ 74 (348)
++++|++|++++|...+.+|... .+++|++|++++|..++ .+|.. +..+ + +|++|+++++.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~--------~~~L~~~~~l~--~L~~L~L~~n~ 316 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD--------WQALADAPVGE--KIQIIYIGYNN 316 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH--------HHHHHHSGGGG--TCCEEECCSSC
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH--------HHhhhccccCC--CCCEEECCCCc
Confidence 78899999999876566777543 38899999999986344 36654 3332 4 77777777653
Q ss_pred CccccccC---CCCCCCcceeEe------ccCC-----CCccEEEEcCCCCcccchhhhcCCCc-cceeccccccccccc
Q 039944 75 SLTCIFSK---NELPATLESLEV------GNLP-----LSLKSLFVYGCSKLGSIAERLDNNTS-LETISIDSCGNLVSF 139 (348)
Q Consensus 75 ~l~~~~~~---~~~~~~L~~L~i------~~l~-----~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~ 139 (348)
+.. +|. ...+++|+.|.+ +.+| .+|+.|++++|. +..+|..+..+++ |++|++++|. +..+
T Consensus 317 -l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~l 392 (636)
T 4eco_A 317 -LKT-FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYI 392 (636)
T ss_dssp -CSS-CCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSC
T ss_pred -CCc-cCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-Cccc
Confidence 444 554 233355555555 1121 125555565554 3345555555555 6666665532 3344
Q ss_pred CCCCCCCC--CccEEEEecCCC------------------------------cCcccccc-cCCCCcceeEeccCCCCCc
Q 039944 140 PEGGLPCA--KLTRLTILDCKR------------------------------LEALPKGM-HNLTSLQYLRIGKGGALPS 186 (348)
Q Consensus 140 ~~~~~~~~--~L~~L~l~~~~~------------------------------l~~~~~~l-~~l~~L~~L~l~~~~~~~~ 186 (348)
|..+...+ +|+.|++++|.. +..+|..+ ..+++|++|++++| .+..
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~ 471 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTE 471 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSB
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCC
Confidence 44333222 444444444332 23343322 23455555555554 2334
Q ss_pred ccccCCC--------CCCcCeeeecCCccchhhhhccccccC--CCCCccEEEecccCCcccccccchhccCCCCCCCCC
Q 039944 187 LEEEDGL--------PTNLQSLDIWGNMEIWKSMIERGRGFH--RFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPAS 256 (348)
Q Consensus 187 ~~~~~~~--------~~~L~~L~l~~~~~l~~~~~~~~~~~~--~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~ 256 (348)
+|..... +++|+.|+++++ .+..++. .+. .+++|+.|++++ +.+..+|... ..+++
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~----~~~~~~l~~L~~L~Ls~--N~l~~ip~~~-------~~l~~ 537 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSD----DFRATTLPYLVGIDLSY--NSFSKFPTQP-------LNSST 537 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCG----GGSTTTCTTCCEEECCS--SCCSSCCCGG-------GGCSS
T ss_pred cCHHHhccccccccccCCccEEECcCC-cCCccCh----hhhhccCCCcCEEECCC--CCCCCcChhh-------hcCCC
Confidence 4422211 115666666653 2334432 222 566666666666 3455555554 35566
Q ss_pred ccEEEecc------CCCccccccccccCCCcceEeccCCCCCCCCCCCCCCCCCcEEEEcCCc
Q 039944 257 LTSLWIEA------FPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGLPSSLLELRISRCP 313 (348)
Q Consensus 257 L~~L~l~~------~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 313 (348)
|+.|++++ +.....+|..+.++++|++|++++| .++.+|.. +.++|++|++++|+
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNP 598 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECCSCT
T ss_pred CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECcCCC
Confidence 77777733 3334456666777777777777774 34666653 44677777777775
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=3.6e-21 Score=191.23 Aligned_cols=286 Identities=17% Similarity=0.162 Sum_probs=173.1
Q ss_pred CCCCcccEEeecCcccccccCCC-CCCCCccEEEeccCcccc--ccccccccccccccccccCCccceeeeeCCCCcccc
Q 039944 3 DTNSSLEILDIEKCHSLTYIAAV-QLPSSLKKLQICDCYNIR--TLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCI 79 (348)
Q Consensus 3 ~~~~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 79 (348)
..+++|+.|++++|...+.+|.. ..+++|+.|++++|..+. .+|..++. ....+..+. +|+.|+++++. +..
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~~~~~~l~--~L~~L~Ls~N~-L~~- 562 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LADDEDTGP--KIQIFYMGYNN-LEE- 562 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HHHCTTTTT--TCCEEECCSSC-CCB-
T ss_pred ccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh-hhhcccccC--CccEEEeeCCc-CCc-
Confidence 37889999999887656677754 338889999998886344 35543100 000112223 67777776643 444
Q ss_pred ccC---CCCCCCcceeEe-----------ccCCCCccEEEEcCCCCcccchhhhcCCCc-cceecccccccccccCCCCC
Q 039944 80 FSK---NELPATLESLEV-----------GNLPLSLKSLFVYGCSKLGSIAERLDNNTS-LETISIDSCGNLVSFPEGGL 144 (348)
Q Consensus 80 ~~~---~~~~~~L~~L~i-----------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~ 144 (348)
+|. ...+++|+.|.+ ..++. |+.|++++|. +..+|..+..+++ |+.|++++|. +..+|..+.
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~-L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~ 639 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK-LTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFN 639 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSE-ESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCC
T ss_pred cCChhhhhcCCCCCEEECCCCCcccchhhcCCCc-ceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhhh
Confidence 554 233455665555 22333 6667776665 3356655666666 7777666643 335554333
Q ss_pred CC-------------------------------CCccEEEEecCCCcCcccccc-cCCCCcceeEeccCCCCCcccccCC
Q 039944 145 PC-------------------------------AKLTRLTILDCKRLEALPKGM-HNLTSLQYLRIGKGGALPSLEEEDG 192 (348)
Q Consensus 145 ~~-------------------------------~~L~~L~l~~~~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~ 192 (348)
.+ ++|+.|++++| .+..+|..+ ..+++|++|++++| .+..+|....
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~ 717 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSL 717 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSS
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHh
Confidence 22 24555555553 233454433 35667777777765 4455554332
Q ss_pred CC--------CCcCeeeecCCccchhhhhccccccC--CCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEe
Q 039944 193 LP--------TNLQSLDIWGNMEIWKSMIERGRGFH--RFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWI 262 (348)
Q Consensus 193 ~~--------~~L~~L~l~~~~~l~~~~~~~~~~~~--~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l 262 (348)
.. ++|+.|++++| .+..++. .+. .+++|+.|++++ +.+..+|... ..+++|+.|++
T Consensus 718 ~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~----~l~~~~l~~L~~L~Ls~--N~L~~lp~~l-------~~L~~L~~L~L 783 (876)
T 4ecn_A 718 KPKDGNYKNTYLLTTIDLRFN-KLTSLSD----DFRATTLPYLSNMDVSY--NCFSSFPTQP-------LNSSQLKAFGI 783 (876)
T ss_dssp SCTTSCCTTGGGCCEEECCSS-CCCCCCG----GGSTTTCTTCCEEECCS--SCCSSCCCGG-------GGCTTCCEEEC
T ss_pred ccccccccccCCccEEECCCC-CCccchH----HhhhccCCCcCEEEeCC--CCCCccchhh-------hcCCCCCEEEC
Confidence 21 27777888775 4445543 233 677888888887 4566666655 36678888888
Q ss_pred cc------CCCccccccccccCCCcceEeccCCCCCCCCCCCCCCCCCcEEEEcCCch
Q 039944 263 EA------FPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGLPSSLLELRISRCPL 314 (348)
Q Consensus 263 ~~------~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 314 (348)
++ +.....+|..+.++++|+.|++++| .+..+|.. +.++|+.|++++|+.
T Consensus 784 s~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp CCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred CCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence 65 3334567777888888888888886 45777774 457888888888863
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=6.7e-21 Score=189.29 Aligned_cols=312 Identities=16% Similarity=0.129 Sum_probs=159.6
Q ss_pred CCCCCcccEEeecCcccccc------------------cCCCC---CCCCccEEEeccCccccccccccccccccccccc
Q 039944 2 CDTNSSLEILDIEKCHSLTY------------------IAAVQ---LPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRY 60 (348)
Q Consensus 2 ~~~~~~L~~L~l~~~~~l~~------------------l~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 60 (348)
++++++|+.|+++++ .++. +|... .+++|+.|++++|.....+|.. +..+
T Consensus 444 l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~--------l~~L 514 (876)
T 4ecn_A 444 IQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF--------LYDL 514 (876)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG--------GGGC
T ss_pred HhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH--------HhCC
Confidence 467899999999986 5665 77653 4899999999999866778865 7888
Q ss_pred cCCccceeeeeCCCCccc-cccCCCCCCCccee--EeccCCCCccEEEEcCCCCcccchh--hhcCCCccceeccccccc
Q 039944 61 TSSLLEHLEIISCPSLTC-IFSKNELPATLESL--EVGNLPLSLKSLFVYGCSKLGSIAE--RLDNNTSLETISIDSCGN 135 (348)
Q Consensus 61 ~~~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L--~i~~l~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~ 135 (348)
+ +|+.|+++++..+.. .+|.. +..+ ....+|+ |+.|++++|. +..+|. .+..+++|+.|++++|.
T Consensus 515 ~--~L~~L~Ls~N~~lsg~~iP~~-----i~~L~~~~~~l~~-L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~- 584 (876)
T 4ecn_A 515 P--ELQSLNIACNRGISAAQLKAD-----WTRLADDEDTGPK-IQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK- 584 (876)
T ss_dssp S--SCCEEECTTCTTSCHHHHHHH-----HHHHHHCTTTTTT-CCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-
T ss_pred C--CCCEEECcCCCCcccccchHH-----HHhhhhcccccCC-ccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-
Confidence 8 999999998752432 13321 0000 0011133 5555555443 224444 44455555555554432
Q ss_pred ccccCCCCCCCCCccEEEEecCCCcCcccccccCCCC-cceeEeccCCCCCcccccCCCC--------------------
Q 039944 136 LVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTS-LQYLRIGKGGALPSLEEEDGLP-------------------- 194 (348)
Q Consensus 136 l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~-------------------- 194 (348)
+..+| .+..+++|+.|++++|. +..+|..+..+++ |++|++++|. +..+|..+...
T Consensus 585 l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 585 VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred cccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 22444 34444445555554432 2344444444444 4444444442 22333222222
Q ss_pred -----------CCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccC-CCCCCCCCccEEEe
Q 039944 195 -----------TNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLG-TALPLPASLTSLWI 262 (348)
Q Consensus 195 -----------~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~-~~~~~~~~L~~L~l 262 (348)
++|+.|++++|. +..++.. .+..+++|+.|++++ +.+..+|....... .....+++|+.|++
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~---~~~~l~~L~~L~Ls~--N~L~~ip~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNE-IQKFPTE---LFATGSPISTIILSN--NLMTSIPENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSC-CCSCCHH---HHHTTCCCSEEECCS--CCCSCCCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred cchhhhccccCCCcCEEEccCCc-CCccCHH---HHccCCCCCEEECCC--CcCCccChHHhccccccccccCCccEEEC
Confidence 245555554432 2233221 223456666666665 34555554321000 00001126777777
Q ss_pred ccCCCccccccccc--cCCCcceEeccCCCCCCCCCCC-CCCCCCcEEEEcCCchhHH-HhhccCCccccCCCCcCEEEe
Q 039944 263 EAFPNLERLSSSIV--DLQNLTELYLFGCPKLKYFPEK-GLPSSLLELRISRCPLIAE-KCRKDGGQYWDLLTHIPRVEI 338 (348)
Q Consensus 263 ~~~~~l~~i~~~~~--~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~i~~~~~~~~ 338 (348)
++| .++.+|..+. .+++|+.|++++| .++.+|.. .-.++|+.|++++|+.+.. .........+..+.++..+.+
T Consensus 736 s~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 736 RFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 763 5556666655 6677777777764 45555542 1256677777765442211 011112223334455555555
Q ss_pred cceee
Q 039944 339 DWKSV 343 (348)
Q Consensus 339 ~~~~~ 343 (348)
.++.+
T Consensus 814 s~N~L 818 (876)
T 4ecn_A 814 GSNDI 818 (876)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 55444
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.5e-20 Score=180.21 Aligned_cols=150 Identities=21% Similarity=0.188 Sum_probs=78.2
Q ss_pred CCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCccc---ccCCCCCCcCeeeecCCccchhhhhccccccCCCC
Q 039944 147 AKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLE---EEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFS 223 (348)
Q Consensus 147 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 223 (348)
++|++|++++|.....+|..+..+++|++|++++| .+..++ ..++.+++|+.|+++++.-...++. ..+..++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~l~ 428 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD---RTCAWAE 428 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS---CCCCCCT
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccCh---hhhcCcc
Confidence 44444444443322223344444555555555544 233221 2244445555555555322111221 1234455
Q ss_pred CccEEEecccCCccc-ccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCC--
Q 039944 224 SLRRLTISRCDEDMV-SFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGL-- 300 (348)
Q Consensus 224 ~L~~L~l~~~c~~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-- 300 (348)
+|+.|++++ | .+. ..+. ..+++|++|+++++ .++.+|..+..+++|+.|++++| .++.+|...+
T Consensus 429 ~L~~L~l~~-n-~l~~~~~~---------~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 495 (562)
T 3a79_B 429 SILVLNLSS-N-MLTGSVFR---------CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDR 495 (562)
T ss_dssp TCCEEECCS-S-CCCGGGGS---------SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTT
T ss_pred cCCEEECCC-C-CCCcchhh---------hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhc
Confidence 555555555 2 222 1221 12257778888774 67777776667788888888774 6667776422
Q ss_pred CCCCcEEEEcCCc
Q 039944 301 PSSLLELRISRCP 313 (348)
Q Consensus 301 ~~~L~~L~l~~c~ 313 (348)
.++|+.|++++++
T Consensus 496 l~~L~~L~l~~N~ 508 (562)
T 3a79_B 496 LTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCCCEECCSCC
T ss_pred CCCCCEEEecCCC
Confidence 5778888888765
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=2.6e-20 Score=176.93 Aligned_cols=136 Identities=14% Similarity=0.085 Sum_probs=83.9
Q ss_pred CCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccc---cccchhccCCCCCCCCCccEEEeccCCCc
Q 039944 192 GLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVS---FPLEDKRLGTALPLPASLTSLWIEAFPNL 268 (348)
Q Consensus 192 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~---~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 268 (348)
..+++|+.|+++++.-....+ ..+..+++|+.|++++ +.+.. +|... ..+++|++|+++++ .+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~--N~l~~l~~~~~~~-------~~l~~L~~L~Ls~N-~l 386 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVF----ENCGHLTELETLILQM--NQLKELSKIAEMT-------TQMKSLQQLDISQN-SV 386 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTT----TTCCCCSSCCEEECCS--SCCCBHHHHHHHH-------TTCTTCCEEECCSS-CC
T ss_pred hhCCcccEEEeECCccChhhh----hhhccCCCCCEEEccC--CccCccccchHHH-------hhCCCCCEEECCCC-cC
Confidence 678899999999965333234 2568899999999998 45654 33434 47889999999995 55
Q ss_pred cc-cccc-cccCCCcceEeccCCCC---------------------CCCCCCCC-CCCCCcEEEEcCCchhHHHhhccCC
Q 039944 269 ER-LSSS-IVDLQNLTELYLFGCPK---------------------LKYFPEKG-LPSSLLELRISRCPLIAEKCRKDGG 324 (348)
Q Consensus 269 ~~-i~~~-~~~~~~L~~L~l~~c~~---------------------l~~l~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~ 324 (348)
.. +|.. +..+++|+.|++++|.- ++.+|... -.++|++|++++|. ++. ...
T Consensus 387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~----l~~ 461 (520)
T 2z7x_B 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKS----VPD 461 (520)
T ss_dssp BCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCC----CCT
T ss_pred CcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCc----cCH
Confidence 54 7763 56666666666666532 22333211 13445555555542 111 111
Q ss_pred ccccCCCCcCEEEecceeeccC
Q 039944 325 QYWDLLTHIPRVEIDWKSVFGD 346 (348)
Q Consensus 325 ~~~~~i~~~~~~~~~~~~~~~~ 346 (348)
..+..+.++..+.+.++.+.|+
T Consensus 462 ~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 462 GIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TTTTTCTTCCEEECCSSCBCCC
T ss_pred HHhccCCcccEEECcCCCCccc
Confidence 1244556777777777777664
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=8.5e-21 Score=183.20 Aligned_cols=271 Identities=17% Similarity=0.133 Sum_probs=154.8
Q ss_pred CcccEEeecCcccccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC
Q 039944 6 SSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN 83 (348)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (348)
.+++.++++++ .++.+|...+ +++|++|++++|. +..++.. .+..+. +|+.|+++++. +.. ++..
T Consensus 51 ~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~-------~~~~l~--~L~~L~L~~n~-l~~-~~~~ 117 (597)
T 3oja_B 51 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY-------AFAYAH--TIQKLYMGFNA-IRY-LPPH 117 (597)
T ss_dssp CCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTT-------TTTTCT--TCCEEECCSSC-CCC-CCTT
T ss_pred CCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCC-CCCCChH-------HhcCCC--CCCEEECCCCc-CCC-CCHH
Confidence 45566666653 4555554432 5666666666665 5555443 245555 66666666542 443 3332
Q ss_pred C--CCCCcceeEe-------------ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCC
Q 039944 84 E--LPATLESLEV-------------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAK 148 (348)
Q Consensus 84 ~--~~~~L~~L~i-------------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 148 (348)
. .+++|+.|.+ ..+++ |+.|++++|......+..+..+++|++|++++| .+..++. ..+++
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~--~~l~~ 193 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDL--SLIPS 193 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCCG--GGCTT
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCC-CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcCh--hhhhh
Confidence 1 1122222222 12343 666666665533333445556666666666653 2322221 11223
Q ss_pred ccEEEEecCC------------------CcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchh
Q 039944 149 LTRLTILDCK------------------RLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWK 210 (348)
Q Consensus 149 L~~L~l~~~~------------------~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 210 (348)
|+.|++++|. .+..++.. ..++|+.|++++| .+...+ .++.+++|+.|+++++. +..
T Consensus 194 L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n-~l~~~~-~l~~l~~L~~L~Ls~N~-l~~ 268 (597)
T 3oja_B 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHN-NLTDTA-WLLNYPGLVEVDLSYNE-LEK 268 (597)
T ss_dssp CSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCE
T ss_pred hhhhhcccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCC-CCCCCh-hhccCCCCCEEECCCCc-cCC
Confidence 3333333321 12222211 1245666666665 344443 56777888888888854 443
Q ss_pred hhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCC
Q 039944 211 SMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCP 290 (348)
Q Consensus 211 ~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 290 (348)
... ..+..+++|+.|++++ +.+..++... ..+++|+.|++++| .+..+|..+..+++|+.|++++|
T Consensus 269 ~~~---~~~~~l~~L~~L~Ls~--N~l~~l~~~~-------~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N- 334 (597)
T 3oja_B 269 IMY---HPFVKMQRLERLYISN--NRLVALNLYG-------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN- 334 (597)
T ss_dssp EES---GGGTTCSSCCEEECTT--SCCCEEECSS-------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-
T ss_pred CCH---HHhcCccCCCEEECCC--CCCCCCCccc-------ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-
Confidence 322 2567788888888887 5666666654 35778999999884 67788888888899999999985
Q ss_pred CCCCCCCCCCCCCCcEEEEcCCc
Q 039944 291 KLKYFPEKGLPSSLLELRISRCP 313 (348)
Q Consensus 291 ~l~~l~~~~~~~~L~~L~l~~c~ 313 (348)
.+..++. ..+++|+.|++++|+
T Consensus 335 ~l~~~~~-~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 335 SIVTLKL-STHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCCCC-CTTCCCSEEECCSSC
T ss_pred CCCCcCh-hhcCCCCEEEeeCCC
Confidence 4666654 335789999999886
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=3.7e-20 Score=173.54 Aligned_cols=266 Identities=20% Similarity=0.218 Sum_probs=157.9
Q ss_pred CCcccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCC
Q 039944 5 NSSLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNE 84 (348)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 84 (348)
+++++.|++.++ .++.+|....+++|++|++++|. +..++. +..+. +|++|+++++. +.. ++...
T Consensus 45 l~~l~~L~l~~~-~i~~l~~~~~l~~L~~L~Ls~n~-l~~~~~---------~~~l~--~L~~L~l~~n~-l~~-~~~~~ 109 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQ-LTDITP---------LKNLT--KLVDILMNNNQ-IAD-ITPLA 109 (466)
T ss_dssp HHTCCEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG---------GTTCT--TCCEEECCSSC-CCC-CGGGT
T ss_pred hccccEEecCCC-CCccCcchhhhcCCCEEECCCCc-cCCchh---------hhccc--cCCEEECCCCc-ccc-Chhhc
Confidence 468999999985 67788876669999999999997 777664 46777 99999999864 555 44444
Q ss_pred CCCCcceeEe-----------ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEE
Q 039944 85 LPATLESLEV-----------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLT 153 (348)
Q Consensus 85 ~~~~L~~L~i-----------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 153 (348)
..++|++|.+ ..+++ |+.|++++|. +..++ .+..+++|+.|++.+ .+..++. +..+++|+.|+
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~l~~-L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~--~~~~~~~-~~~l~~L~~L~ 183 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDIDPLKNLTN-LNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN--QVTDLKP-LANLTTLERLD 183 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGGGTTCTT-CSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE--SCCCCGG-GTTCTTCCEEE
T ss_pred CCCCCCEEECCCCCCCCChHHcCCCC-CCEEECCCCc-cCCCh-hhccCCcccEeecCC--cccCchh-hccCCCCCEEE
Confidence 5577777777 33555 8888887765 44443 255556666655542 1222221 33445555555
Q ss_pred EecCCCcCcccccccCCCCcceeEeccCC---------------------CCCcccccCCCCCCcCeeeecCCccchhhh
Q 039944 154 ILDCKRLEALPKGMHNLTSLQYLRIGKGG---------------------ALPSLEEEDGLPTNLQSLDIWGNMEIWKSM 212 (348)
Q Consensus 154 l~~~~~l~~~~~~l~~l~~L~~L~l~~~~---------------------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 212 (348)
+++|. +..++ .+..+++|++|++++|. .+..++ .+..+++|+.|+++++. +....
T Consensus 184 l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~ 259 (466)
T 1o6v_A 184 ISSNK-VSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ-ISNLA 259 (466)
T ss_dssp CCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG
T ss_pred CcCCc-CCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCc-cccch
Confidence 55543 33332 24444555555555442 233333 33444555555555432 22222
Q ss_pred hccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCC
Q 039944 213 IERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKL 292 (348)
Q Consensus 213 ~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l 292 (348)
.+..+++|+.|++++ +.+..++. . ..+++|+.|++++| .++.++. +..+++|+.|++++| .+
T Consensus 260 -----~~~~l~~L~~L~l~~--n~l~~~~~-~-------~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l 321 (466)
T 1o6v_A 260 -----PLSGLTKLTELKLGA--NQISNISP-L-------AGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NI 321 (466)
T ss_dssp -----GGTTCTTCSEEECCS--SCCCCCGG-G-------TTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CC
T ss_pred -----hhhcCCCCCEEECCC--CccCcccc-c-------cCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cC
Confidence 134555666666665 34444433 2 35667777777764 4555553 667777888888775 45
Q ss_pred CCCCCCCCCCCCcEEEEcCCc
Q 039944 293 KYFPEKGLPSSLLELRISRCP 313 (348)
Q Consensus 293 ~~l~~~~~~~~L~~L~l~~c~ 313 (348)
..++.....++|++|++++|.
T Consensus 322 ~~~~~~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 322 SDISPVSSLTKLQRLFFYNNK 342 (466)
T ss_dssp SCCGGGGGCTTCCEEECCSSC
T ss_pred CCchhhccCccCCEeECCCCc
Confidence 544443336788888888774
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=2.3e-20 Score=180.51 Aligned_cols=57 Identities=23% Similarity=0.050 Sum_probs=27.3
Q ss_pred ccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecc
Q 039944 167 MHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 167 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 232 (348)
+..+++|++|++++|. +..+| .+ .+++|+.|++.++...... .+..+++|+.|++++
T Consensus 303 l~~~~~L~~L~l~~n~-l~~lp-~~-~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQ-LKQFP-TL-DLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSR 359 (606)
T ss_dssp CCTTCCCSEEEEESCC-CSSCC-CC-CCSSCCEEEEESCSSCEEC------CCCCCTTCCEEECCS
T ss_pred ccccccCCEEEccccc-Ccccc-cC-CCCccceeeccCCcCccch------hhccCCCCCEEECcC
Confidence 3444455555555553 24455 33 4555555555554322221 233455555555555
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=2.8e-20 Score=166.42 Aligned_cols=286 Identities=14% Similarity=0.192 Sum_probs=205.4
Q ss_pred cccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCC
Q 039944 7 SLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELP 86 (348)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 86 (348)
+++.++++++ .++.+|.. .++.|+.|+++++. ++.++.. .+..++ +|++|+++++ .+.. +....+
T Consensus 32 ~l~~l~~~~~-~l~~lp~~-~~~~l~~L~L~~n~-i~~~~~~-------~~~~l~--~L~~L~L~~n-~l~~-~~~~~~- 96 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKD-LPPDTALLDLQNNK-ITEIKDG-------DFKNLK--NLHTLILINN-KISK-ISPGAF- 96 (330)
T ss_dssp ETTEEECTTS-CCCSCCCS-CCTTCCEEECCSSC-CCCBCTT-------TTTTCT--TCCEEECCSS-CCCC-BCTTTT-
T ss_pred CCeEEEecCC-CccccCcc-CCCCCeEEECCCCc-CCEeChh-------hhccCC--CCCEEECCCC-cCCe-eCHHHh-
Confidence 7888988874 67777743 36789999999997 7888775 477777 9999999886 4555 432222
Q ss_pred CCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcC--cc
Q 039944 87 ATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLE--AL 163 (348)
Q Consensus 87 ~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~--~~ 163 (348)
..+++ |+.|++++|. +..++..+ .++|++|++++| .+..++. .+..+++|+.|++++|..-. ..
T Consensus 97 --------~~l~~-L~~L~Ls~n~-l~~l~~~~--~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 97 --------APLVK-LERLYLSKNQ-LKELPEKM--PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp --------TTCTT-CCEEECCSSC-CSBCCSSC--CTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred --------cCCCC-CCEEECCCCc-CCccChhh--cccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 33466 9999999876 55666544 379999999985 4545544 45668899999999865421 34
Q ss_pred cccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCccccccc-
Q 039944 164 PKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPL- 242 (348)
Q Consensus 164 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~- 242 (348)
+..+..+++|++|+++++ .+..+|.. ..++|+.|+++++. +..... ..+..+++|+.|++++ +.+..++.
T Consensus 164 ~~~~~~l~~L~~L~l~~n-~l~~l~~~--~~~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~Ls~--n~l~~~~~~ 234 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADT-NITTIPQG--LPPSLTELHLDGNK-ITKVDA---ASLKGLNNLAKLGLSF--NSISAVDNG 234 (330)
T ss_dssp TTGGGGCTTCCEEECCSS-CCCSCCSS--CCTTCSEEECTTSC-CCEECT---GGGTTCTTCCEEECCS--SCCCEECTT
T ss_pred hhhccCCCCcCEEECCCC-ccccCCcc--ccccCCEEECCCCc-CCccCH---HHhcCCCCCCEEECCC--CcCceeChh
Confidence 456788999999999987 56677733 34899999999964 554432 2578899999999998 56666554
Q ss_pred chhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCC--------CCCCcEEEEcCCch
Q 039944 243 EDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGL--------PSSLLELRISRCPL 314 (348)
Q Consensus 243 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--------~~~L~~L~l~~c~~ 314 (348)
.. ..+++|++|++++| .++.+|..+..+++|++|++++| .++.++...+ .++++.+++++++.
T Consensus 235 ~~-------~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 235 SL-------ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TG-------GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred hc-------cCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 23 46789999999995 78899999999999999999985 6777776433 36889999999874
Q ss_pred hHHHhhccCCccccCCCCcCEEEecce
Q 039944 315 IAEKCRKDGGQYWDLLTHIPRVEIDWK 341 (348)
Q Consensus 315 l~~~~~~~~~~~~~~i~~~~~~~~~~~ 341 (348)
... ......+..+..+..+.+.++
T Consensus 306 ~~~---~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 306 QYW---EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CGG---GSCGGGGTTCCCGGGEEC---
T ss_pred ccc---ccCccccccccceeEEEeccc
Confidence 211 122234445566666666543
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.6e-20 Score=180.30 Aligned_cols=114 Identities=23% Similarity=0.186 Sum_probs=66.8
Q ss_pred cCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCc-cccccccccCCCcceEeccCCCCCCCCCC
Q 039944 219 FHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNL-ERLSSSIVDLQNLTELYLFGCPKLKYFPE 297 (348)
Q Consensus 219 ~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 297 (348)
+..+++|+.|++++ |.-....+... ..+++|++|++++|... ..+|..+..+++|+.|++++| .++.++.
T Consensus 417 ~~~l~~L~~L~l~~-n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~ 487 (570)
T 2z63_A 417 FLSLRNLIYLDISH-THTRVAFNGIF-------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP 487 (570)
T ss_dssp TTTCTTCCEEECTT-SCCEECCTTTT-------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT
T ss_pred hhcCCCCCEEeCcC-Ccccccchhhh-------hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCCh
Confidence 45566666666666 32222222222 45677777777775332 246667777778888888775 4554433
Q ss_pred CCC--CCCCcEEEEcCCchhHHHhhccCCccccCCCCcCEEEecceeeccC
Q 039944 298 KGL--PSSLLELRISRCPLIAEKCRKDGGQYWDLLTHIPRVEIDWKSVFGD 346 (348)
Q Consensus 298 ~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 346 (348)
..+ .++|++|++++|. ++. ...+.+..+.++..+.+.++.+.|+
T Consensus 488 ~~~~~l~~L~~L~l~~n~-l~~----~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQ-LKS----VPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TTTTTCTTCCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhhcccCCCEEeCCCCc-CCC----CCHHHhhcccCCcEEEecCCcccCC
Confidence 222 5778888887774 221 1222345566777777777776654
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=8.4e-20 Score=175.08 Aligned_cols=161 Identities=16% Similarity=0.066 Sum_probs=104.1
Q ss_pred cCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccc-cccchhc
Q 039944 168 HNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVS-FPLEDKR 246 (348)
Q Consensus 168 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~-~~~~~~~ 246 (348)
..+++|++|++++|.-....|..++.+++|+.|+++++ .++.++.. ...+..+++|+.|++++ +.+.. +|...
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~~~l~~L~~L~l~~--N~l~~~~~~~~-- 423 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKV-ALMTKNMSSLETLDVSL--NSLNSHAYDRT-- 423 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHH-HHTTTTCTTCCEEECTT--SCCBSCCSSCC--
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccc-hhhhcCCCCCCEEECCC--CcCCCccChhh--
Confidence 45677777777776433335556677788888888774 34432210 02356778888888887 44544 55432
Q ss_pred cCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCC-CCCCcEEEEcCCchhHHHhhccCCc
Q 039944 247 LGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGL-PSSLLELRISRCPLIAEKCRKDGGQ 325 (348)
Q Consensus 247 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~ 325 (348)
+..+++|++|++++|.....++..+. ++|+.|++++| .++.+|.... .++|++|++++|.- +. ....
T Consensus 424 ----~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l-~~----l~~~ 491 (562)
T 3a79_B 424 ----CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQL-KS----VPDG 491 (562)
T ss_dssp ----CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCC-CC----CCTT
T ss_pred ----hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCC-CC----CCHH
Confidence 24567888888888543334443333 68999999985 7888887433 68999999998852 21 1112
Q ss_pred cccCCCCcCEEEecceeeccC
Q 039944 326 YWDLLTHIPRVEIDWKSVFGD 346 (348)
Q Consensus 326 ~~~~i~~~~~~~~~~~~~~~~ 346 (348)
.+..+.++..+.+.++.+.|+
T Consensus 492 ~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp STTTCTTCCCEECCSCCBCCC
T ss_pred HHhcCCCCCEEEecCCCcCCC
Confidence 255677888888988887765
No 29
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=7.2e-21 Score=170.09 Aligned_cols=221 Identities=19% Similarity=0.252 Sum_probs=185.1
Q ss_pred CCcccEEeecCcccccccCCCCC-CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC
Q 039944 5 NSSLEILDIEKCHSLTYIAAVQL-PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN 83 (348)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (348)
.++++.|+++++ .++.+|.... +++|++|++++|. +..+|.. +..+. +|++|+++++. +.. +|.
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~--------~~~l~--~L~~L~Ls~n~-l~~-lp~- 144 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAG-LMELPDT--------MQQFA--GLETLTLARNP-LRA-LPA- 144 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSC-CCCCCSC--------GGGGT--TCSEEEEESCC-CCC-CCG-
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCC-ccchhHH--------HhccC--CCCEEECCCCc-ccc-CcH-
Confidence 478999999984 7788887544 8999999999997 7788876 67877 99999999864 544 443
Q ss_pred CCCCCcceeEeccCCCCccEEEEcCCCCcccchhhhcC---------CCccceecccccccccccCCCCCCCCCccEEEE
Q 039944 84 ELPATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDN---------NTSLETISIDSCGNLVSFPEGGLPCAKLTRLTI 154 (348)
Q Consensus 84 ~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 154 (348)
.+ ..+++ |+.|++++|.....+|..+.. +++|++|++++| .+..+|..+..+++|+.|++
T Consensus 145 ----~l-----~~l~~-L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 145 ----SI-----ASLNR-LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKI 213 (328)
T ss_dssp ----GG-----GGCTT-CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEE
T ss_pred ----HH-----hcCcC-CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEc
Confidence 22 33476 999999998888888766554 999999999995 56688888888999999999
Q ss_pred ecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccC
Q 039944 155 LDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCD 234 (348)
Q Consensus 155 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c 234 (348)
++|. +..+|+.+..+++|++|++++|.....+|..++.+++|+.|++++|.....++ ..+..+++|+.|++++ |
T Consensus 214 ~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~-n 287 (328)
T 4fcg_A 214 RNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP----LDIHRLTQLEKLDLRG-C 287 (328)
T ss_dssp ESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC----TTGGGCTTCCEEECTT-C
T ss_pred cCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc----hhhhcCCCCCEEeCCC-C
Confidence 9964 66788889999999999999998888888788999999999999988777766 3578899999999999 8
Q ss_pred CcccccccchhccCCCCCCCCCccEEEecc
Q 039944 235 EDMVSFPLEDKRLGTALPLPASLTSLWIEA 264 (348)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 264 (348)
.....+|.+. ..+++|+.+.+..
T Consensus 288 ~~~~~iP~~l-------~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 288 VNLSRLPSLI-------AQLPANCIILVPP 310 (328)
T ss_dssp TTCCCCCGGG-------GGSCTTCEEECCG
T ss_pred CchhhccHHH-------hhccCceEEeCCH
Confidence 8888999887 4778899998875
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=4.8e-20 Score=180.73 Aligned_cols=204 Identities=16% Similarity=0.058 Sum_probs=106.0
Q ss_pred ccEEEEcCCCCcccchhhhcCCCccceecccccccccccC-CCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEec
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFP-EGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIG 179 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~ 179 (348)
|+.|++++|......+..+..+++|+.|++++|.....++ ..+..+++|+.|++++|......+..+..+++|++|+++
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 6666666665444445566677777777777754333344 244456677777776654322222344555666666665
Q ss_pred cCCC--CCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccch--hccCCCCCCCC
Q 039944 180 KGGA--LPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLED--KRLGTALPLPA 255 (348)
Q Consensus 180 ~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~--~~~~~~~~~~~ 255 (348)
++.. ....|..++.+++|+.|+++++ .+..++. ..+.++++|+.|++++ +.+..++... ++....+..++
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~---~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNN-NIANIND---DMLEGLEKLEILDLQH--NNLARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECCS--SCCGGGGSTTSTTSCCCTTTTCT
T ss_pred cccccccccCCcccccCCCCCEEECCCC-CCCcCCh---hhhccccccCEEeCCC--CCccccchhhccCCcchhhcCCC
Confidence 5421 1233444555666666666663 2333332 1345566666666665 3444332210 00000123445
Q ss_pred CccEEEeccCCCcccccc-ccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEcCC
Q 039944 256 SLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRISRC 312 (348)
Q Consensus 256 ~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c 312 (348)
+|++|++++ +.++.+|. .+..+++|+.|++++ +.++.+|...+ .++|++|++++|
T Consensus 537 ~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 537 HLHILNLES-NGFDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCEEECCC-CCCCCCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC
Confidence 566666665 34555554 355566666666655 35555555332 355666666555
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.5e-20 Score=175.34 Aligned_cols=200 Identities=21% Similarity=0.190 Sum_probs=111.7
Q ss_pred CCCcccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC
Q 039944 4 TNSSLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN 83 (348)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (348)
.+++|++|+++++ .++.+|....+++|++|++++|. ++.++ +..++ +|++|+++++ .++. ++.
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~----------~~~l~--~L~~L~Ls~N-~l~~-~~~- 102 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLD----------LSQNT--NLTYLACDSN-KLTN-LDV- 102 (457)
T ss_dssp HHTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCC----------CTTCT--TCSEEECCSS-CCSC-CCC-
T ss_pred HcCCCCEEEccCC-CcccChhhcccCCCCEEEccCCc-CCeEc----------cccCC--CCCEEECcCC-CCce-eec-
Confidence 4678888888874 66667644457888888888886 66654 34555 7778887764 3554 442
Q ss_pred CCCCCcceeEe----------ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEE
Q 039944 84 ELPATLESLEV----------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLT 153 (348)
Q Consensus 84 ~~~~~L~~L~i----------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 153 (348)
...++|++|.+ ..+++ |+.|++++|. +..++ +..+++|++|+++.|..+..+ .+..+++|+.|+
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~~~~l~~-L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLDVSQNPL-LTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCCCTTCTT-CCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CCCCcCCEEECCCCcCCeecCCCCCc-CCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 22344444444 22344 6666666554 33332 455666666666655444444 234455666666
Q ss_pred EecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEeccc
Q 039944 154 ILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 233 (348)
Q Consensus 154 l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 233 (348)
+++| .++.+| +..+++|++|++++| .+..++ ++.+++|+.|+++++ .+..++ +..+++|+.|++++
T Consensus 177 ls~n-~l~~l~--l~~l~~L~~L~l~~N-~l~~~~--l~~l~~L~~L~Ls~N-~l~~ip------~~~l~~L~~L~l~~- 242 (457)
T 3bz5_A 177 CSFN-KITELD--VSQNKLLNRLNCDTN-NITKLD--LNQNIQLTFLDCSSN-KLTEID------VTPLTQLTYFDCSV- 242 (457)
T ss_dssp CCSS-CCCCCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC------CTTCTTCSEEECCS-
T ss_pred CCCC-ccceec--cccCCCCCEEECcCC-cCCeec--cccCCCCCEEECcCC-cccccC------ccccCCCCEEEeeC-
Confidence 6664 344443 455566666666654 334332 455566666666663 333322 34556666666665
Q ss_pred CCcccccc
Q 039944 234 DEDMVSFP 241 (348)
Q Consensus 234 c~~l~~~~ 241 (348)
+.+..++
T Consensus 243 -N~l~~~~ 249 (457)
T 3bz5_A 243 -NPLTELD 249 (457)
T ss_dssp -SCCSCCC
T ss_pred -CcCCCcC
Confidence 3444433
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=2e-21 Score=172.69 Aligned_cols=251 Identities=13% Similarity=0.098 Sum_probs=185.9
Q ss_pred CCccEEEeccCcccc---ccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEE
Q 039944 29 SSLKKLQICDCYNIR---TLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLF 105 (348)
Q Consensus 29 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~ 105 (348)
.+++.|+++++. +. .+|.. +..++ +|++|++++++.+...+|. .+ ..++. |+.|+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~--------l~~l~--~L~~L~L~~~n~l~~~~p~-----~l-----~~l~~-L~~L~ 107 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSS--------LANLP--YLNFLYIGGINNLVGPIPP-----AI-----AKLTQ-LHYLY 107 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGG--------GGGCT--TCSEEEEEEETTEESCCCG-----GG-----GGCTT-CSEEE
T ss_pred ceEEEEECCCCC-ccCCcccChh--------HhCCC--CCCeeeCCCCCcccccCCh-----hH-----hcCCC-CCEEE
Confidence 579999999987 55 46654 67777 9999999865555531332 22 33466 99999
Q ss_pred EcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCC-CcceeEeccCCCC
Q 039944 106 VYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLT-SLQYLRIGKGGAL 184 (348)
Q Consensus 106 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~-~L~~L~l~~~~~~ 184 (348)
+++|.....+|..+..+++|++|++++|.....+|..+..+++|++|++++|.....+|..+..++ +|++|++++|...
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 998875557788888999999999998654446777778888999999999764447888888887 8999999987433
Q ss_pred CcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEecc
Q 039944 185 PSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEA 264 (348)
Q Consensus 185 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 264 (348)
...|..++.++ |+.|+++++. +..... ..+..+++|+.|++++ +.+...+... ..+++|++|++++
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~---~~~~~l~~L~~L~L~~--N~l~~~~~~~-------~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNM-LEGDAS---VLFGSDKNTQKIHLAK--NSLAFDLGKV-------GLSKNLNGLDLRN 253 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSE-EEECCG---GGCCTTSCCSEEECCS--SEECCBGGGC-------CCCTTCCEEECCS
T ss_pred ccCChHHhCCc-ccEEECcCCc-ccCcCC---HHHhcCCCCCEEECCC--CceeeecCcc-------cccCCCCEEECcC
Confidence 35565666665 9999999864 443332 3578889999999998 4555333333 4678999999998
Q ss_pred CCCccccccccccCCCcceEeccCCCCCCCCCCCCCCCCCcEEEEcCCchh
Q 039944 265 FPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGLPSSLLELRISRCPLI 315 (348)
Q Consensus 265 ~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 315 (348)
+.....+|..+..+++|+.|++++|+--..+|..+-.++|+.+++++++.+
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 644347888899999999999999754446777555788888888888754
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=7.3e-20 Score=165.31 Aligned_cols=272 Identities=16% Similarity=0.133 Sum_probs=200.2
Q ss_pred CCcccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCC
Q 039944 5 NSSLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNE 84 (348)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 84 (348)
|+.....+.++ ..++++|. ...++|++|+++++. ++.++.. .+..++ +|+.|+++++ .+.. ++...
T Consensus 30 C~~~~~c~~~~-~~l~~iP~-~~~~~L~~L~l~~n~-i~~~~~~-------~~~~l~--~L~~L~L~~n-~l~~-~~~~~ 95 (353)
T 2z80_A 30 CDRNGICKGSS-GSLNSIPS-GLTEAVKSLDLSNNR-ITYISNS-------DLQRCV--NLQALVLTSN-GINT-IEEDS 95 (353)
T ss_dssp ECTTSEEECCS-TTCSSCCT-TCCTTCCEEECTTSC-CCEECTT-------TTTTCT--TCCEEECTTS-CCCE-ECTTT
T ss_pred CCCCeEeeCCC-CCcccccc-cccccCcEEECCCCc-CcccCHH-------HhccCC--CCCEEECCCC-ccCc-cCHhh
Confidence 34445566664 46778876 346799999999997 8888875 477777 9999999986 4665 44332
Q ss_pred CCCCcceeEeccCCCCccEEEEcCCCCcccch-hhhcCCCccceecccccccccccCC--CCCCCCCccEEEEecCCCcC
Q 039944 85 LPATLESLEVGNLPLSLKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSCGNLVSFPE--GGLPCAKLTRLTILDCKRLE 161 (348)
Q Consensus 85 ~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~~l~ 161 (348)
+ ..+++ |+.|++++|. +..++ ..+..+++|++|++++| .+..+|. .+..+++|++|++++|..+.
T Consensus 96 ~---------~~l~~-L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 96 F---------SSLGS-LEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp T---------TTCTT-CCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred c---------CCCCC-CCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc
Confidence 2 33466 9999999886 45555 44889999999999984 5667776 56778999999999986677
Q ss_pred ccc-ccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCccccc
Q 039944 162 ALP-KGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSF 240 (348)
Q Consensus 162 ~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~ 240 (348)
.++ ..+..+++|++|++++|.-....+..++.+++|+.|+++++. +...+.. .+..+++|+.|++++ +.+..+
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~---~~~~~~~L~~L~L~~--n~l~~~ 237 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEI---FVDVTSSVECLELRD--TDLDTF 237 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHH---HHHHTTTEEEEEEES--CBCTTC
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhh---hhhhcccccEEECCC--Cccccc
Confidence 765 467889999999999884333346678889999999999965 5555432 345689999999998 456554
Q ss_pred ccchhccCCCCCCCCCccEEEeccCCCcc-----ccccccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEcCCc
Q 039944 241 PLEDKRLGTALPLPASLTSLWIEAFPNLE-----RLSSSIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRISRCP 313 (348)
Q Consensus 241 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 313 (348)
+...- ......+.++.+++.++ .+. .+|..+..+++|+.|++++| .++.+|...+ .++|++|++++|+
T Consensus 238 ~~~~l---~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 238 HFSEL---STGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCC---------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccc---ccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 43210 00124556778888774 333 46778889999999999995 7888887533 7899999999886
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=6.9e-20 Score=164.06 Aligned_cols=286 Identities=16% Similarity=0.220 Sum_probs=199.2
Q ss_pred cccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCC
Q 039944 7 SLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELP 86 (348)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 86 (348)
+++.++++++ .++.+|.. .+++|+.|++++|. +..++.. .+..+. +|++|+++++ .+.. ++...+
T Consensus 34 ~l~~l~~~~~-~l~~ip~~-~~~~l~~L~l~~n~-i~~~~~~-------~~~~l~--~L~~L~L~~n-~l~~-~~~~~~- 98 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKE-ISPDTTLLDLQNND-ISELRKD-------DFKGLQ--HLYALVLVNN-KISK-IHEKAF- 98 (332)
T ss_dssp ETTEEECCSS-CCSSCCSC-CCTTCCEEECCSSC-CCEECTT-------TTTTCT--TCCEEECCSS-CCCE-ECGGGS-
T ss_pred cCCEEECCCC-CccccCCC-CCCCCeEEECCCCc-CCccCHh-------HhhCCC--CCcEEECCCC-ccCc-cCHhHh-
Confidence 6888888874 67777754 35789999999987 7777654 467777 8999999886 3555 432222
Q ss_pred CCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCc--Ccc
Q 039944 87 ATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRL--EAL 163 (348)
Q Consensus 87 ~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l--~~~ 163 (348)
..+++ |+.|++++|. +..++..+. ++|++|++++| .+..++. .+..+++|+.|++++|..- ...
T Consensus 99 --------~~l~~-L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 99 --------SPLRK-LQKLYISKNH-LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp --------TTCTT-CCEEECCSSC-CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred --------hCcCC-CCEEECCCCc-CCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence 33466 8999998775 556665443 78999999884 5556655 3567889999999886532 133
Q ss_pred cccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccc
Q 039944 164 PKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLE 243 (348)
Q Consensus 164 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~ 243 (348)
+..+..+ +|++|+++++ .+..+|... .++|+.|+++++ .+..... ..+..+++|+.|++++ +.+..++..
T Consensus 166 ~~~~~~l-~L~~L~l~~n-~l~~l~~~~--~~~L~~L~l~~n-~i~~~~~---~~l~~l~~L~~L~L~~--N~l~~~~~~ 235 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEA-KLTGIPKDL--PETLNELHLDHN-KIQAIEL---EDLLRYSKLYRLGLGH--NQIRMIENG 235 (332)
T ss_dssp TTSSCSC-CCSCCBCCSS-BCSSCCSSS--CSSCSCCBCCSS-CCCCCCT---TSSTTCTTCSCCBCCS--SCCCCCCTT
T ss_pred cccccCC-ccCEEECcCC-CCCccCccc--cCCCCEEECCCC-cCCccCH---HHhcCCCCCCEEECCC--CcCCcCChh
Confidence 4455666 8999999887 566676333 479999999985 4454443 2578889999999998 566666542
Q ss_pred hhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCC--------CCCCcEEEEcCCchh
Q 039944 244 DKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGL--------PSSLLELRISRCPLI 315 (348)
Q Consensus 244 ~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--------~~~L~~L~l~~c~~l 315 (348)
. +..+++|++|++++ +.++.+|..+..+++|+.|+++++ .++.++...+ .++++.|++++++..
T Consensus 236 ~------~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 236 S------LSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp G------GGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred H------hhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCccc
Confidence 1 14678999999998 478899999999999999999995 6777766433 367899999999743
Q ss_pred HHHhhccCCccccCCCCcCEEEecce
Q 039944 316 AEKCRKDGGQYWDLLTHIPRVEIDWK 341 (348)
Q Consensus 316 ~~~~~~~~~~~~~~i~~~~~~~~~~~ 341 (348)
.. ......+..+..+..+.+.++
T Consensus 308 ~~---~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 308 YW---EVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GG---GSCGGGGTTBCCSTTEEC---
T ss_pred cc---ccCcccccccchhhhhhcccc
Confidence 11 112223445566666655543
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2e-19 Score=160.86 Aligned_cols=263 Identities=14% Similarity=0.132 Sum_probs=191.9
Q ss_pred CcccEEeecCcccccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC
Q 039944 6 SSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN 83 (348)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (348)
++|+.|+++++ .++.++...+ +++|++|++++|. +..++.. .+..++ +|++|+++++ .++. +|..
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------~~~~l~--~L~~L~Ls~n-~l~~-l~~~ 118 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPG-------AFAPLV--KLERLYLSKN-QLKE-LPEK 118 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTT-------TTTTCT--TCCEEECCSS-CCSB-CCSS
T ss_pred CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCc-CCeeCHH-------HhcCCC--CCCEEECCCC-cCCc-cChh
Confidence 58999999985 6788876443 8999999999997 7777444 377877 9999999985 4665 6653
Q ss_pred CCCCCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccc--cccCCCCCCCCCccEEEEecCCCcC
Q 039944 84 ELPATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNL--VSFPEGGLPCAKLTRLTILDCKRLE 161 (348)
Q Consensus 84 ~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~l~~~~~l~ 161 (348)
.. +. |+.|++++|......+..+..+++|+.|+++.|... ...+..+..+++|+.|++++| .+.
T Consensus 119 ~~------------~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~ 184 (330)
T 1xku_A 119 MP------------KT-LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NIT 184 (330)
T ss_dssp CC------------TT-CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCC
T ss_pred hc------------cc-ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccc
Confidence 22 34 999999988754444567888999999999986432 134455667889999999985 467
Q ss_pred cccccccCCCCcceeEeccCCCCCcc-cccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCccccc
Q 039944 162 ALPKGMHNLTSLQYLRIGKGGALPSL-EEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSF 240 (348)
Q Consensus 162 ~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~ 240 (348)
.+|..+. ++|++|++++|. +..+ +..+..+++|+.|+++++. +..... ..+..+++|+.|++++ +.+..+
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~L~~--N~l~~l 255 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVDN---GSLANTPHLRELHLNN--NKLVKV 255 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEECT---TTGGGSTTCCEEECCS--SCCSSC
T ss_pred cCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeCh---hhccCCCCCCEEECCC--CcCccC
Confidence 7776543 799999999874 5544 4567889999999999954 554443 2467889999999998 577788
Q ss_pred ccchhccCCCCCCCCCccEEEeccCCCcccccc-ccc------cCCCcceEeccCCCCCC-CCCCCCC--CCCCcEEEEc
Q 039944 241 PLEDKRLGTALPLPASLTSLWIEAFPNLERLSS-SIV------DLQNLTELYLFGCPKLK-YFPEKGL--PSSLLELRIS 310 (348)
Q Consensus 241 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~------~~~~L~~L~l~~c~~l~-~l~~~~~--~~~L~~L~l~ 310 (348)
|.+. ..+++|++|++++ +.++.++. .+. ..+.++.+++.+++... .++...+ ..+++.++++
T Consensus 256 p~~l-------~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 256 PGGL-------ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp CTTT-------TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred Chhh-------ccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 7765 5778999999998 46777765 222 34788999999976321 1332222 5788888888
Q ss_pred CC
Q 039944 311 RC 312 (348)
Q Consensus 311 ~c 312 (348)
++
T Consensus 328 ~N 329 (330)
T 1xku_A 328 NY 329 (330)
T ss_dssp --
T ss_pred cc
Confidence 75
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=3e-19 Score=179.00 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=17.9
Q ss_pred ccEEEEcCCCCcccc-hhhhcCCCccceeccccc
Q 039944 101 LKSLFVYGCSKLGSI-AERLDNNTSLETISIDSC 133 (348)
Q Consensus 101 L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~ 133 (348)
|+.|++++|...... +..+..+++|++|++++|
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 666666665533222 234556666666666553
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=2.3e-19 Score=175.93 Aligned_cols=263 Identities=17% Similarity=0.118 Sum_probs=183.4
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCC-CccccccCCCC----CCCcceeEe--------
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCP-SLTCIFSKNEL----PATLESLEV-------- 94 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~----~~~L~~L~i-------- 94 (348)
+++|++|++++|. +..++.. .+..++ +|++|+++++. .... ++...+ .++|+.|.+
T Consensus 328 l~~L~~L~l~~n~-l~~~~~~-------~~~~l~--~L~~L~Ls~n~~~~~~-l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 328 LKCLEHLNMEDND-IPGIKSN-------MFTGLI--NLKYLSLSNSFTSLRT-LTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CTTCCEEECCSCC-BCCCCTT-------TTTTCT--TCCEEECTTCBSCCCE-ECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred CCCCCEEECCCCc-cCCCChh-------Hhcccc--CCcEEECCCCchhhhh-cchhhhcccccCcCceEECCCCCCCeE
Confidence 3444444444443 3333333 345555 77777776643 1121 222111 135666655
Q ss_pred -----ccCCCCccEEEEcCCCCcccch-hhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCC--cCccccc
Q 039944 95 -----GNLPLSLKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKR--LEALPKG 166 (348)
Q Consensus 95 -----~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~--l~~~~~~ 166 (348)
..+++ |+.|++++|.....++ ..+..+++|+.|++++|......+..+..+++|+.|++.+|.. +..+|..
T Consensus 397 ~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~ 475 (680)
T 1ziw_A 397 ESDAFSWLGH-LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475 (680)
T ss_dssp CTTTTTTCTT-CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred ChhhhhCCCC-CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc
Confidence 23555 9999999987655554 6788899999999999654433445667789999999998753 3567778
Q ss_pred ccCCCCcceeEeccCCCCCcccc-cCCCCCCcCeeeecCCccchhhhhc-----cccccCCCCCccEEEecccCCccccc
Q 039944 167 MHNLTSLQYLRIGKGGALPSLEE-EDGLPTNLQSLDIWGNMEIWKSMIE-----RGRGFHRFSSLRRLTISRCDEDMVSF 240 (348)
Q Consensus 167 l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~-----~~~~~~~l~~L~~L~l~~~c~~l~~~ 240 (348)
+..+++|++|++++| .+..++. .+..+++|+.|+++++. +..+... ....+.++++|+.|++++ +.+..+
T Consensus 476 ~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i 551 (680)
T 1ziw_A 476 FQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEI 551 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCC
T ss_pred cccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCC--CCCCCC
Confidence 899999999999987 4555553 46789999999999964 4443211 001367889999999998 577777
Q ss_pred ccchhccCCCCCCCCCccEEEeccCCCccccccc-cccCCCcceEeccCCCCCCCCCCCC---CCCCCcEEEEcCCch
Q 039944 241 PLEDKRLGTALPLPASLTSLWIEAFPNLERLSSS-IVDLQNLTELYLFGCPKLKYFPEKG---LPSSLLELRISRCPL 314 (348)
Q Consensus 241 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~c~~ 314 (348)
|... +..+++|+.|++++ +.++.+|.. +..+++|+.|++++| .++.++... ..++|++|++++||-
T Consensus 552 ~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 552 PVEV------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp CTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred CHHH------cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCc
Confidence 7632 35788999999998 578888874 688999999999995 777777643 258999999999873
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=2e-19 Score=161.09 Aligned_cols=264 Identities=15% Similarity=0.154 Sum_probs=190.6
Q ss_pred CCcccEEeecCcccccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccC
Q 039944 5 NSSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSK 82 (348)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 82 (348)
.++|+.|+++++ .++.+++..+ +++|++|++++|. +..++.. .+..++ +|++|+++++ .+.. +|.
T Consensus 53 ~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------~~~~l~--~L~~L~L~~n-~l~~-l~~ 119 (332)
T 2ft3_A 53 SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK-ISKIHEK-------AFSPLR--KLQKLYISKN-HLVE-IPP 119 (332)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECGG-------GSTTCT--TCCEEECCSS-CCCS-CCS
T ss_pred CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCc-cCccCHh-------HhhCcC--CCCEEECCCC-cCCc-cCc
Confidence 368999999985 6777866443 8999999999997 7777544 377877 9999999985 4665 665
Q ss_pred CCCCCCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccc--cccCCCCCCCCCccEEEEecCCCc
Q 039944 83 NELPATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNL--VSFPEGGLPCAKLTRLTILDCKRL 160 (348)
Q Consensus 83 ~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~l~~~~~l 160 (348)
... +. |+.|++++|......+..+..+++|++|++++|... ...+..+..+ +|+.|++++| .+
T Consensus 120 ~~~------------~~-L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l 184 (332)
T 2ft3_A 120 NLP------------SS-LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KL 184 (332)
T ss_dssp SCC------------TT-CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BC
T ss_pred ccc------------cc-CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CC
Confidence 322 34 999999988644333456888999999999985432 1334445555 8999999985 46
Q ss_pred CcccccccCCCCcceeEeccCCCCCccc-ccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccc
Q 039944 161 EALPKGMHNLTSLQYLRIGKGGALPSLE-EEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVS 239 (348)
Q Consensus 161 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~ 239 (348)
..+|..+. ++|++|++++| .+..++ ..+..+++|+.|+++++ .+...+. ..+..+++|+.|++++ +.+..
T Consensus 185 ~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~L~~--N~l~~ 255 (332)
T 2ft3_A 185 TGIPKDLP--ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIEN---GSLSFLPTLRELHLDN--NKLSR 255 (332)
T ss_dssp SSCCSSSC--SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCT---TGGGGCTTCCEEECCS--SCCCB
T ss_pred CccCcccc--CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCCh---hHhhCCCCCCEEECCC--CcCee
Confidence 77776543 79999999987 445444 46788999999999995 4555443 2567889999999998 57788
Q ss_pred cccchhccCCCCCCCCCccEEEeccCCCcccccc-cccc------CCCcceEeccCCCCCC-CCCCCCC--CCCCcEEEE
Q 039944 240 FPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS-SIVD------LQNLTELYLFGCPKLK-YFPEKGL--PSSLLELRI 309 (348)
Q Consensus 240 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~------~~~L~~L~l~~c~~l~-~l~~~~~--~~~L~~L~l 309 (348)
+|.+. ..+++|+.|++++ +.++.++. .+.. .++|+.|++.+++... .++...+ .++|+.+++
T Consensus 256 lp~~l-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 256 VPAGL-------PDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CCTTG-------GGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred cChhh-------hcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 88766 4678999999998 56777765 2322 4679999999976431 2333222 688999999
Q ss_pred cCCc
Q 039944 310 SRCP 313 (348)
Q Consensus 310 ~~c~ 313 (348)
+++.
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 8774
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=3.1e-19 Score=166.48 Aligned_cols=264 Identities=17% Similarity=0.123 Sum_probs=178.4
Q ss_pred CCCCCcccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCcccccc
Q 039944 2 CDTNSSLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFS 81 (348)
Q Consensus 2 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 81 (348)
+..+++|++|+++++ .++.++ .+.+++|++|++++|. +..++ +..++ +|++|+++++ .+.. ++
T Consensus 60 l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~----------~~~l~--~L~~L~L~~N-~l~~-l~ 122 (457)
T 3bz5_A 60 IEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD----------VTPLT--KLTYLNCDTN-KLTK-LD 122 (457)
T ss_dssp GGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC----------CTTCT--TCCEEECCSS-CCSC-CC
T ss_pred hcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee----------cCCCC--cCCEEECCCC-cCCe-ec
Confidence 356789999999975 677775 4458889999999987 66654 35666 8888888875 4665 55
Q ss_pred CCCCCCCcceeEe----------ccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccE
Q 039944 82 KNELPATLESLEV----------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTR 151 (348)
Q Consensus 82 ~~~~~~~L~~L~i----------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 151 (348)
. ...++|++|.+ ..++. |+.|++++|..+..+ .+..+++|+.|++++| .+..+| +..+++|+.
T Consensus 123 ~-~~l~~L~~L~l~~N~l~~l~l~~l~~-L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~ 195 (457)
T 3bz5_A 123 V-SQNPLLTYLNCARNTLTEIDVSHNTQ-LTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD--VSQNKLLNR 195 (457)
T ss_dssp C-TTCTTCCEEECTTSCCSCCCCTTCTT-CCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC--CTTCTTCCE
T ss_pred C-CCCCcCCEEECCCCccceeccccCCc-CCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec--cccCCCCCE
Confidence 3 34466777766 34565 999999988767666 3677899999999884 566666 566788999
Q ss_pred EEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEec
Q 039944 152 LTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTIS 231 (348)
Q Consensus 152 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 231 (348)
|++++|. ++.+ .+..+++|++|++++| .+..+| ++.+++|+.|+++++ .+...+ ...+++|+.|+++
T Consensus 196 L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N-~l~~~~------~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 196 LNCDTNN-ITKL--DLNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVN-PLTELD------VSTLSKLTTLHCI 262 (457)
T ss_dssp EECCSSC-CSCC--CCTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC------CTTCTTCCEEECT
T ss_pred EECcCCc-CCee--ccccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCC-cCCCcC------HHHCCCCCEEecc
Confidence 9998854 5555 3677889999999887 566666 677888999999885 444433 2344555544444
Q ss_pred cc---------CCcccccccchhccCCCCCCCCCccEEEeccCCCcccccc--------ccccCCCcceEeccCCCCCCC
Q 039944 232 RC---------DEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS--------SIVDLQNLTELYLFGCPKLKY 294 (348)
Q Consensus 232 ~~---------c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~--------~~~~~~~L~~L~l~~c~~l~~ 294 (348)
.+ |.....+|. ..+++|+.|++++|..++.+|. .+.++++|+.|+++++ .++.
T Consensus 263 ~n~L~~L~l~~n~~~~~~~~---------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~ 332 (457)
T 3bz5_A 263 QTDLLEIDLTHNTQLIYFQA---------EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTE 332 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEEC---------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSC
T ss_pred CCCCCEEECCCCccCCcccc---------cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccc
Confidence 30 322333332 2457788888888766665553 2444566777777663 5555
Q ss_pred CCCCCCCCCCcEEEEcCCc
Q 039944 295 FPEKGLPSSLLELRISRCP 313 (348)
Q Consensus 295 l~~~~~~~~L~~L~l~~c~ 313 (348)
++ .+-+++|+.|+++++.
T Consensus 333 l~-l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 333 LD-VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CC-CTTCTTCSEEECCSSC
T ss_pred cc-cccCCcCcEEECCCCC
Confidence 53 2235778888877653
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=2.5e-19 Score=163.96 Aligned_cols=268 Identities=15% Similarity=0.128 Sum_probs=153.4
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEc
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVY 107 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~ 107 (348)
+++++.|+++++. +..+|.. .++.++ +|++|+++++. +.. ++...+ ..++. |+.|+++
T Consensus 44 l~~l~~l~l~~~~-l~~l~~~-------~~~~l~--~L~~L~L~~n~-i~~-~~~~~~---------~~l~~-L~~L~L~ 101 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKLPAA-------LLDSFR--QVELLNLNDLQ-IEE-IDTYAF---------AYAHT-IQKLYMG 101 (390)
T ss_dssp GCCCSEEEEESCE-ESEECTH-------HHHHCC--CCSEEECTTSC-CCE-ECTTTT---------TTCTT-CCEEECC
T ss_pred cCCceEEEecCCc-hhhCChh-------Hhcccc--cCcEEECCCCc-ccc-cChhhc---------cCCCC-cCEEECC
Confidence 6899999999997 8999987 567777 99999999864 665 554322 11233 5555555
Q ss_pred CCCCcccchhhhcCCCccceecccccccccccCCCC-CCCCCccEEEEecCCCcCcc-cccccCCCCcceeEeccCCCCC
Q 039944 108 GCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGG-LPCAKLTRLTILDCKRLEAL-PKGMHNLTSLQYLRIGKGGALP 185 (348)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~ 185 (348)
+|......+..+..+++|++|++++| .+..+|... ..+++|++|++++|. +..+ +..+..+++|++|++++| .+.
T Consensus 102 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~ 178 (390)
T 3o6n_A 102 FNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLT 178 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS-CCS
T ss_pred CCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC-cCC
Confidence 44422222333444555555555442 333444332 334455555554432 2222 223344444555544443 122
Q ss_pred cccc--------------------------------------cCCCCCCcCeeeecCCccchhhhhccccccCCCCCccE
Q 039944 186 SLEE--------------------------------------EDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRR 227 (348)
Q Consensus 186 ~~~~--------------------------------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 227 (348)
.++. ....+++|+.|+++++. +...+ .+..+++|+.
T Consensus 179 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~ 252 (390)
T 3o6n_A 179 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDTA-----WLLNYPGLVE 252 (390)
T ss_dssp BCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSC-CCCCG-----GGGGCTTCSE
T ss_pred ccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCC-CcccH-----HHcCCCCccE
Confidence 1110 01123345555555532 33222 3466777888
Q ss_pred EEecccCCccccc-ccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCC-CCCCCCc
Q 039944 228 LTISRCDEDMVSF-PLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEK-GLPSSLL 305 (348)
Q Consensus 228 L~l~~~c~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~ 305 (348)
|++++ +.+..+ +... ..+++|++|++++ +.++.++..+..+++|+.|++++| .++.+|.. .-.++|+
T Consensus 253 L~Ls~--n~l~~~~~~~~-------~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 253 VDLSY--NELEKIMYHPF-------VKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLE 321 (390)
T ss_dssp EECCS--SCCCEEESGGG-------TTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCS
T ss_pred EECCC--CcCCCcChhHc-------cccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCC
Confidence 88887 345444 3333 4677888888887 467777777777888888888885 56666542 1157888
Q ss_pred EEEEcCCchhHHHhhccCCccccCCCCcCEEEecceeecc
Q 039944 306 ELRISRCPLIAEKCRKDGGQYWDLLTHIPRVEIDWKSVFG 345 (348)
Q Consensus 306 ~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 345 (348)
+|++++|.. +. .....+..+..+.+.++.+-|
T Consensus 322 ~L~L~~N~i-~~-------~~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 322 NLYLDHNSI-VT-------LKLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCC-CC-------CCCCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCcc-ce-------eCchhhccCCEEEcCCCCccc
Confidence 888888762 11 124456678888888776654
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=4.7e-19 Score=164.76 Aligned_cols=241 Identities=19% Similarity=0.250 Sum_probs=150.9
Q ss_pred cEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCC
Q 039944 9 EILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPAT 88 (348)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 88 (348)
+.++..+ ..++.+|. .+.++++.|+++++. +..++.. .+..++ +|++|+++++ .+.. ++...+
T Consensus 46 ~~v~c~~-~~l~~iP~-~~~~~l~~L~L~~n~-i~~~~~~-------~~~~l~--~L~~L~Ls~n-~i~~-i~~~~~--- 108 (440)
T 3zyj_A 46 SKVICVR-KNLREVPD-GISTNTRLLNLHENQ-IQIIKVN-------SFKHLR--HLEILQLSRN-HIRT-IEIGAF--- 108 (440)
T ss_dssp CEEECCS-CCCSSCCS-CCCTTCSEEECCSCC-CCEECTT-------TTSSCS--SCCEEECCSS-CCCE-ECGGGG---
T ss_pred CEEEeCC-CCcCcCCC-CCCCCCcEEEccCCc-CCeeCHH-------HhhCCC--CCCEEECCCC-cCCc-cChhhc---
Confidence 3444443 35566664 235677777777776 6666654 466666 7777777764 3444 433222
Q ss_pred cceeEeccCCCCccEEEEcCCCCcccch-hhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCcccc-
Q 039944 89 LESLEVGNLPLSLKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEALPK- 165 (348)
Q Consensus 89 L~~L~i~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~- 165 (348)
..+++ |+.|++++|. +..++ ..+..+++|++|++++| .+..++. .+..+++|+.|++.+|..+..++.
T Consensus 109 ------~~l~~-L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 179 (440)
T 3zyj_A 109 ------NGLAN-LNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179 (440)
T ss_dssp ------TTCSS-CCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred ------cCCcc-CCEEECCCCc-CCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence 23355 7777777765 44443 45667777777777774 4545544 455677777777777666666654
Q ss_pred cccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchh
Q 039944 166 GMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDK 245 (348)
Q Consensus 166 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~ 245 (348)
.+..+++|++|++++| .+..+| .+..+++|+.|+++++ .+..... ..+..+++|+.|++++ +.+..++..
T Consensus 180 ~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~---~~~~~l~~L~~L~L~~--n~l~~~~~~-- 249 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN-HLSAIRP---GSFQGLMHLQKLWMIQ--SQIQVIERN-- 249 (440)
T ss_dssp TTTTCSSCCEEECTTS-CCSSCC-CCTTCSSCCEEECTTS-CCCEECT---TTTTTCTTCCEEECTT--CCCCEECTT--
T ss_pred hhhcccccCeecCCCC-cCcccc-ccCCCcccCEEECCCC-ccCccCh---hhhccCccCCEEECCC--CceeEEChh--
Confidence 4567777777777776 566666 5667777777777775 3444432 2566777777777776 455554432
Q ss_pred ccCCCCCCCCCccEEEeccCCCcccccc-ccccCCCcceEeccCCC
Q 039944 246 RLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGCP 290 (348)
Q Consensus 246 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~ 290 (348)
++..+++|+.|++++ +.++.++. .+..+++|+.|++++++
T Consensus 250 ----~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 250 ----AFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ----SSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ----hhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 124566777777777 35665554 45667777777777654
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=5.4e-19 Score=168.89 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=87.3
Q ss_pred CCCCccEEEEecCCCcCccc---ccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCC
Q 039944 145 PCAKLTRLTILDCKRLEALP---KGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHR 221 (348)
Q Consensus 145 ~~~~L~~L~l~~~~~l~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 221 (348)
.+++|+.|++++| .++.++ ..+..+++|++|++++| .+..+|..++.+++|+.|+++++. +..++. ..
T Consensus 359 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~------~~ 429 (549)
T 2z81_A 359 AWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKT------CI 429 (549)
T ss_dssp SSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCT------TS
T ss_pred ccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccc------hh
Confidence 3445555555543 233332 12344555555555554 344455444455555555555532 332221 11
Q ss_pred CCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCC-
Q 039944 222 FSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGL- 300 (348)
Q Consensus 222 l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~- 300 (348)
.++|+.|++++ +.+..++ ..+++|++|++++| .++.+|. ...+++|+.|++++| .++.++...+
T Consensus 430 ~~~L~~L~Ls~--N~l~~~~----------~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 494 (549)
T 2z81_A 430 PQTLEVLDVSN--NNLDSFS----------LFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFD 494 (549)
T ss_dssp CTTCSEEECCS--SCCSCCC----------CCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGG
T ss_pred cCCceEEECCC--CChhhhc----------ccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHh
Confidence 24556666665 3344333 25678999999994 7888886 567999999999995 7777776544
Q ss_pred -CCCCcEEEEcCCc
Q 039944 301 -PSSLLELRISRCP 313 (348)
Q Consensus 301 -~~~L~~L~l~~c~ 313 (348)
.++|+.|++++|+
T Consensus 495 ~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 495 RLTSLQKIWLHTNP 508 (549)
T ss_dssp GCTTCCEEECCSSC
T ss_pred cCcccCEEEecCCC
Confidence 7899999999887
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=9.5e-19 Score=175.38 Aligned_cols=153 Identities=15% Similarity=0.172 Sum_probs=82.5
Q ss_pred CcccEEeecCcccccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC
Q 039944 6 SSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN 83 (348)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (348)
++|++|+++++ .++.+++..+ +++|++|++++|.....++.. .++.++ +|++|+++++. +.. +...
T Consensus 24 ~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~-------~f~~L~--~L~~L~Ls~N~-l~~-~~p~ 91 (844)
T 3j0a_A 24 NTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE-------AFRNLP--NLRILDLGSSK-IYF-LHPD 91 (844)
T ss_dssp TTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTT-------TTSSCT--TCCEEECTTCC-CCE-ECTT
T ss_pred CCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHH-------HhcCCC--CCCEEECCCCc-Ccc-cCHh
Confidence 45666666653 4555543332 666666666666444455333 355555 66666666543 333 3222
Q ss_pred CCCCCcceeEeccCCCCccEEEEcCCCCcccchhh--hcCCCccceeccccccccccc-C-CCCCCCCCccEEEEecCCC
Q 039944 84 ELPATLESLEVGNLPLSLKSLFVYGCSKLGSIAER--LDNNTSLETISIDSCGNLVSF-P-EGGLPCAKLTRLTILDCKR 159 (348)
Q Consensus 84 ~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~-~-~~~~~~~~L~~L~l~~~~~ 159 (348)
.+ ..+++ |+.|++++|.....++.. +..+++|++|+++.|. +..+ + ..+..+++|++|++++|..
T Consensus 92 ~~---------~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 92 AF---------QGLFH-LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp SS---------CSCSS-CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred Hc---------cCCcc-cCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcC
Confidence 11 23355 777777777644434433 6677777777777743 3333 2 2456677777777777543
Q ss_pred cCcccccccCC--CCcceeEeccC
Q 039944 160 LEALPKGMHNL--TSLQYLRIGKG 181 (348)
Q Consensus 160 l~~~~~~l~~l--~~L~~L~l~~~ 181 (348)
-...+..+..+ ++|+.|++++|
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCS
T ss_pred CeeCHHHcccccCCccceEECCCC
Confidence 33233333333 44555555444
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=3.6e-20 Score=164.54 Aligned_cols=251 Identities=16% Similarity=0.095 Sum_probs=191.4
Q ss_pred CcccEEeecCccccc---ccCCC-CCCCCccEEEecc-Ccccc-ccccccccccccccccccCCccceeeeeCCCCcccc
Q 039944 6 SSLEILDIEKCHSLT---YIAAV-QLPSSLKKLQICD-CYNIR-TLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCI 79 (348)
Q Consensus 6 ~~L~~L~l~~~~~l~---~l~~~-~~~~~L~~L~l~~-~~~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 79 (348)
.+++.|+++++ .++ .+|.. ..+++|++|++++ +. +. .+|.. +..++ +|++|+++++. +...
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~-l~~~~p~~--------l~~l~--~L~~L~Ls~n~-l~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINN-LVGPIPPA--------IAKLT--QLHYLYITHTN-VSGA 116 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETT-EESCCCGG--------GGGCT--TCSEEEEEEEC-CEEE
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCc-ccccCChh--------HhcCC--CCCEEECcCCe-eCCc
Confidence 68999999986 454 46654 3389999999996 54 54 56655 77887 99999999864 5421
Q ss_pred ccCCCCCCCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCC-CccEEEEecCC
Q 039944 80 FSKNELPATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCA-KLTRLTILDCK 158 (348)
Q Consensus 80 ~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~~~ 158 (348)
+|. .+ ..+++ |+.|++++|.....+|..+..+++|++|++++|.....+|..+..++ +|+.|++++|.
T Consensus 117 ~p~-----~~-----~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 117 IPD-----FL-----SQIKT-LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp CCG-----GG-----GGCTT-CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred CCH-----HH-----hCCCC-CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 332 22 33466 99999999875557788899999999999999655457888888887 99999999976
Q ss_pred CcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCccc
Q 039944 159 RLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMV 238 (348)
Q Consensus 159 ~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~ 238 (348)
....+|..+..++ |++|++++|......+..+..+++|+.|+++++. +.... ..+..+++|++|++++ +.+.
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~----~~~~~l~~L~~L~Ls~--N~l~ 257 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDL----GKVGLSKNLNGLDLRN--NRIY 257 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBG----GGCCCCTTCCEEECCS--SCCE
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeec----CcccccCCCCEEECcC--Cccc
Confidence 5557777888887 9999999874444566678889999999999964 44333 1357789999999998 4555
Q ss_pred -ccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCC
Q 039944 239 -SFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFP 296 (348)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~ 296 (348)
.+|... ..+++|++|+++++.....+|.. .++++|+.+++.+++.+...|
T Consensus 258 ~~~p~~l-------~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 258 GTLPQGL-------TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ECCCGGG-------GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CcCChHH-------hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 667665 46789999999996444477765 889999999999988666543
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=3.4e-19 Score=170.97 Aligned_cols=175 Identities=21% Similarity=0.182 Sum_probs=121.0
Q ss_pred CCCccceeccccccccccc---CCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCccc--ccCCCCC
Q 039944 121 NNTSLETISIDSCGNLVSF---PEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLE--EEDGLPT 195 (348)
Q Consensus 121 ~l~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~ 195 (348)
.+++|++|++++|. +... +..+..+++|+.|++++|. +..++..+..+++|++|++++|. +...+ ..+..++
T Consensus 345 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 345 DLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR 421 (570)
T ss_dssp BCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCT
T ss_pred cCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCc-cccccchhhhhcCC
Confidence 45555555555532 2222 2333445667777776643 44455556777888888888763 33332 2467788
Q ss_pred CcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCccc--ccccchhccCCCCCCCCCccEEEeccCCCcccc-c
Q 039944 196 NLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMV--SFPLEDKRLGTALPLPASLTSLWIEAFPNLERL-S 272 (348)
Q Consensus 196 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~ 272 (348)
+|+.|++++|......+ ..+..+++|+.|++++ | .+. .+|... ..+++|++|++++| .++.+ |
T Consensus 422 ~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~-n-~l~~~~~p~~~-------~~l~~L~~L~l~~n-~l~~~~~ 487 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAG-N-SFQENFLPDIF-------TELRNLTFLDLSQC-QLEQLSP 487 (570)
T ss_dssp TCCEEECTTSCCEECCT----TTTTTCTTCCEEECTT-C-EEGGGEECSCC-------TTCTTCCEEECTTS-CCCEECT
T ss_pred CCCEEeCcCCcccccch----hhhhcCCcCcEEECcC-C-cCccccchhhh-------hcccCCCEEECCCC-ccccCCh
Confidence 99999999875433333 3578899999999998 4 443 456544 57889999999996 55555 7
Q ss_pred cccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEcCCc
Q 039944 273 SSIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRISRCP 313 (348)
Q Consensus 273 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 313 (348)
..+..+++|++|++++| .++.++...+ .++|++|++++|+
T Consensus 488 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 78899999999999996 6777776444 6899999999876
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1e-18 Score=163.06 Aligned_cols=241 Identities=22% Similarity=0.284 Sum_probs=157.0
Q ss_pred cEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCC
Q 039944 9 EILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPAT 88 (348)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 88 (348)
..++..+ ..++.+|. ..+++++.|+++++. +..++.. .+..+. +|++|+++++ .+.. ++...+
T Consensus 57 ~~v~c~~-~~l~~iP~-~~~~~l~~L~L~~n~-i~~~~~~-------~~~~l~--~L~~L~Ls~n-~i~~-~~~~~~--- 119 (452)
T 3zyi_A 57 SKVVCTR-RGLSEVPQ-GIPSNTRYLNLMENN-IQMIQAD-------TFRHLH--HLEVLQLGRN-SIRQ-IEVGAF--- 119 (452)
T ss_dssp CEEECCS-SCCSSCCS-CCCTTCSEEECCSSC-CCEECTT-------TTTTCT--TCCEEECCSS-CCCE-ECTTTT---
T ss_pred cEEEECC-CCcCccCC-CCCCCccEEECcCCc-CceECHH-------HcCCCC--CCCEEECCCC-ccCC-cChhhc---
Confidence 4455443 35566663 335678888888876 6666554 466766 8888888775 4554 443322
Q ss_pred cceeEeccCCCCccEEEEcCCCCcccch-hhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCcccc-
Q 039944 89 LESLEVGNLPLSLKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEALPK- 165 (348)
Q Consensus 89 L~~L~i~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~- 165 (348)
..+++ |+.|++++|. +..++ ..+..+++|++|++++| .+..++. .+..+++|+.|++++|..+..++.
T Consensus 120 ------~~l~~-L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 120 ------NGLAS-LNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp ------TTCTT-CCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred ------cCccc-CCEEECCCCc-CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 23355 8888887776 44443 44667888888888774 4555554 455677888888887777777764
Q ss_pred cccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchh
Q 039944 166 GMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDK 245 (348)
Q Consensus 166 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~ 245 (348)
.+..+++|++|++++| .+..+| .+..+++|+.|+++++. +..... ..+..+++|+.|++++ +.+..++..
T Consensus 191 ~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~---~~~~~l~~L~~L~L~~--n~l~~~~~~-- 260 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNH-FPEIRP---GSFHGLSSLKKLWVMN--SQVSLIERN-- 260 (452)
T ss_dssp TTTTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTSC-CSEECG---GGGTTCTTCCEEECTT--SCCCEECTT--
T ss_pred hccCCCCCCEEECCCC-cccccc-cccccccccEEECcCCc-CcccCc---ccccCccCCCEEEeCC--CcCceECHH--
Confidence 4567788888888876 566666 66777788888887753 444332 2567777888888887 455544332
Q ss_pred ccCCCCCCCCCccEEEeccCCCcccccc-ccccCCCcceEeccCCC
Q 039944 246 RLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGCP 290 (348)
Q Consensus 246 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~ 290 (348)
++..+++|+.|+++++ .++.++. .+..+++|+.|++++++
T Consensus 261 ----~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 261 ----AFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ----TTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ----HhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 1245677888888774 5666654 45667778888887754
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1.2e-18 Score=168.19 Aligned_cols=269 Identities=14% Similarity=0.107 Sum_probs=157.0
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEc
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVY 107 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~ 107 (348)
+.+++.|+++++. +..+|.. .+..++ +|+.|+++++ .+.. ++...+ ..++. |+.|+++
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~-------~~~~l~--~L~~L~L~~n-~l~~-~~~~~~---------~~l~~-L~~L~L~ 107 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAA-------LLDSFR--QVELLNLNDL-QIEE-IDTYAF---------AYAHT-IQKLYMG 107 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTH-------HHHHCC--CCSEEECTTS-CCCE-ECTTTT---------TTCTT-CCEEECC
T ss_pred CCCceEEEeeCCC-CCCcCHH-------HHccCC--CCcEEECCCC-CCCC-CChHHh---------cCCCC-CCEEECC
Confidence 6789999999987 8889887 577777 9999999986 4666 554322 12233 5555555
Q ss_pred CCCCcccchhhhcCCCccceecccccccccccCCCC-CCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCc
Q 039944 108 GCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGG-LPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPS 186 (348)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~ 186 (348)
+|......+..+..+++|++|++++| .+..+|... ..+++|+.|++++|......|..+..+++|++|++++| .+..
T Consensus 108 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 185 (597)
T 3oja_B 108 FNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTH 185 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSB
T ss_pred CCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCC
Confidence 54422222333445555555555552 333444432 34455555555554322222223445555555555544 2222
Q ss_pred ccc-----------------c---------------------CCCCCCcCeeeecCCccchhhhhccccccCCCCCccEE
Q 039944 187 LEE-----------------E---------------------DGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRL 228 (348)
Q Consensus 187 ~~~-----------------~---------------------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 228 (348)
++. . ...+++|+.|+++++. +.... .+..+++|+.|
T Consensus 186 ~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~~-----~l~~l~~L~~L 259 (597)
T 3oja_B 186 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDTA-----WLLNYPGLVEV 259 (597)
T ss_dssp CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCCG-----GGGGCTTCSEE
T ss_pred cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCCCh-----hhccCCCCCEE
Confidence 210 0 1112345555555532 22222 35667788888
Q ss_pred EecccCCccccc-ccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCC-CCCCCCcE
Q 039944 229 TISRCDEDMVSF-PLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEK-GLPSSLLE 306 (348)
Q Consensus 229 ~l~~~c~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~ 306 (348)
++++ +.+..+ |... ..+++|+.|++++ +.++.+|..+..+++|+.|++++| .+..+|.. +-+++|+.
T Consensus 260 ~Ls~--N~l~~~~~~~~-------~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~ 328 (597)
T 3oja_B 260 DLSY--NELEKIMYHPF-------VKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLEN 328 (597)
T ss_dssp ECCS--SCCCEEESGGG-------TTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSE
T ss_pred ECCC--CccCCCCHHHh-------cCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCE
Confidence 8887 344443 3333 4677888888887 467777777777888888888885 56666652 11678888
Q ss_pred EEEcCCchhHHHhhccCCccccCCCCcCEEEecceeecc
Q 039944 307 LRISRCPLIAEKCRKDGGQYWDLLTHIPRVEIDWKSVFG 345 (348)
Q Consensus 307 L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 345 (348)
|++++|... +.....+..+..+.+.++.+-|
T Consensus 329 L~L~~N~l~--------~~~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 329 LYLDHNSIV--------TLKLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp EECCSSCCC--------CCCCCTTCCCSEEECCSSCEEH
T ss_pred EECCCCCCC--------CcChhhcCCCCEEEeeCCCCCC
Confidence 888887631 1124456678888888877654
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=6.8e-19 Score=155.71 Aligned_cols=241 Identities=19% Similarity=0.099 Sum_probs=111.1
Q ss_pred EEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCc
Q 039944 10 ILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATL 89 (348)
Q Consensus 10 ~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L 89 (348)
.++.++ ..++++|. .++++|++|+++++. ++.++.. .++.++ +|++|+++++. +.. +... +...
T Consensus 11 ~l~c~~-~~l~~ip~-~~~~~l~~L~L~~n~-l~~i~~~-------~~~~l~--~L~~L~L~~n~-l~~-~~~~--~~~~ 74 (306)
T 2z66_A 11 EIRCNS-KGLTSVPT-GIPSSATRLELESNK-LQSLPHG-------VFDKLT--QLTKLSLSSNG-LSF-KGCC--SQSD 74 (306)
T ss_dssp EEECCS-SCCSSCCS-CCCTTCCEEECCSSC-CCCCCTT-------TTTTCT--TCSEEECCSSC-CCE-EEEE--EHHH
T ss_pred EEEcCC-CCcccCCC-CCCCCCCEEECCCCc-cCccCHh-------Hhhccc--cCCEEECCCCc-cCc-ccCc--cccc
Confidence 455544 34555554 234567777777765 5666655 355555 66777766542 322 1100 0000
Q ss_pred ceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCC--CCCCCCCccEEEEecCCCcCcccccc
Q 039944 90 ESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPE--GGLPCAKLTRLTILDCKRLEALPKGM 167 (348)
Q Consensus 90 ~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~l 167 (348)
..+++ |+.|++++|. +..++..+..+++|++|++++| .+..++. .+..+++|+.|++++|......+..
T Consensus 75 -----~~~~~-L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~- 145 (306)
T 2z66_A 75 -----FGTTS-LKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI- 145 (306)
T ss_dssp -----HSCSC-CCEEECCSCS-EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-
T ss_pred -----ccccc-cCEEECCCCc-cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhh-
Confidence 11233 5666665553 3344444555555555555552 2333332 3334445555555443322222223
Q ss_pred cCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccch-hhhhccccccCCCCCccEEEecccCCcccccc-cchh
Q 039944 168 HNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIW-KSMIERGRGFHRFSSLRRLTISRCDEDMVSFP-LEDK 245 (348)
Q Consensus 168 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~-~~~~ 245 (348)
+..+++|+.|+++++.-.. ..+ ..+..+++|+.|++++ +.+..++ ...
T Consensus 146 -----------------------~~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~Ls~--n~l~~~~~~~~- 195 (306)
T 2z66_A 146 -----------------------FNGLSSLEVLKMAGNSFQENFLP----DIFTELRNLTFLDLSQ--CQLEQLSPTAF- 195 (306)
T ss_dssp -----------------------TTTCTTCCEEECTTCEEGGGEEC----SCCTTCTTCCEEECTT--SCCCEECTTTT-
T ss_pred -----------------------cccCcCCCEEECCCCccccccch----hHHhhCcCCCEEECCC--CCcCCcCHHHh-
Confidence 3444455555554432111 111 1344555555555555 2333332 222
Q ss_pred ccCCCCCCCCCccEEEeccCCCcccccc-ccccCCCcceEeccCCCCCCCCCCCC---CCCCCcEEEEcCCc
Q 039944 246 RLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGCPKLKYFPEKG---LPSSLLELRISRCP 313 (348)
Q Consensus 246 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~c~ 313 (348)
..+++|++|+++++ .++.++. .+..+++|+.|++++| .+...+... ++++|++|++++++
T Consensus 196 ------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 196 ------NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ------TTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ------cCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence 34455666666553 3443333 4455566666666664 333322211 12466666666654
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=7.5e-18 Score=163.42 Aligned_cols=157 Identities=19% Similarity=0.131 Sum_probs=109.5
Q ss_pred CCCCCccEEEEecCCCcCccc-ccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCC
Q 039944 144 LPCAKLTRLTILDCKRLEALP-KGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRF 222 (348)
Q Consensus 144 ~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 222 (348)
..+++|+.+++.++......+ ..+..+++++.++++.+......+.....+++++.|+++++........ ..+..+
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~---~~~~~l 493 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTEL 493 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTC
T ss_pred cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc---hhhhhc
Confidence 334556666665544333322 2345667777777776643333444566788999999998765554433 357889
Q ss_pred CCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccccc-ccccCCCcceEeccCCCCCCCCCCCCC-
Q 039944 223 SSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGCPKLKYFPEKGL- 300 (348)
Q Consensus 223 ~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~- 300 (348)
++|+.|++++ +.+..++... +..+++|++|++++ +.++.++. .+..+++|+.|+++++ .++.++...+
T Consensus 494 ~~L~~L~Ls~--N~L~~l~~~~------f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~ 563 (635)
T 4g8a_A 494 RNLTFLDLSQ--CQLEQLSPTA------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ 563 (635)
T ss_dssp TTCCEEECTT--SCCCEECTTT------TTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTT
T ss_pred cccCEEECCC--CccCCcChHH------HcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHH
Confidence 9999999998 4677665422 25788999999999 46777655 6888999999999995 6777766443
Q ss_pred --CCCCcEEEEcCCc
Q 039944 301 --PSSLLELRISRCP 313 (348)
Q Consensus 301 --~~~L~~L~l~~c~ 313 (348)
+++|++|+++++|
T Consensus 564 ~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 564 HFPSSLAFLNLTQND 578 (635)
T ss_dssp CCCTTCCEEECTTCC
T ss_pred hhhCcCCEEEeeCCC
Confidence 5789999999866
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.3e-18 Score=162.17 Aligned_cols=154 Identities=27% Similarity=0.348 Sum_probs=91.8
Q ss_pred ccceeeeeCCCCccccccCCCCCCCcceeEe--------ccCCCCccEEEEcCCCCcccchhhhcCCCccceeccccccc
Q 039944 64 LLEHLEIISCPSLTCIFSKNELPATLESLEV--------GNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGN 135 (348)
Q Consensus 64 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i--------~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 135 (348)
+|++|+++++ .++. +|. .+++|+.|.+ ..+|.+|+.|++++|. +..+| .+..+++|++|++++| .
T Consensus 92 ~L~~L~l~~n-~l~~-lp~--~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N-~ 164 (454)
T 1jl5_A 92 HLESLVASCN-SLTE-LPE--LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNN-S 164 (454)
T ss_dssp TCSEEECCSS-CCSS-CCC--CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-C
T ss_pred CCCEEEccCC-cCCc-ccc--ccCCCcEEECCCCccCcccCCCCCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCC-c
Confidence 5555555542 3444 442 2355555555 1233347777777765 44565 4777788888888774 4
Q ss_pred ccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhcc
Q 039944 136 LVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIER 215 (348)
Q Consensus 136 l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 215 (348)
+..+|... ++|++|++++| .+..+| .+..+++|++|++++| .+..+|. .+++|+.|+++++ .+..++
T Consensus 165 l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~n-~l~~lp--- 231 (454)
T 1jl5_A 165 LKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPD---LPLSLESIVAGNN-ILEELP--- 231 (454)
T ss_dssp CSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCC---CCTTCCEEECCSS-CCSSCC---
T ss_pred CcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cCCcCCC---CcCcccEEECcCC-cCCccc---
Confidence 55565532 37778887775 455565 5677777777777776 3444442 2357777777775 344443
Q ss_pred ccccCCCCCccEEEecccCCcccccc
Q 039944 216 GRGFHRFSSLRRLTISRCDEDMVSFP 241 (348)
Q Consensus 216 ~~~~~~l~~L~~L~l~~~c~~l~~~~ 241 (348)
.+..+++|+.|++++ +.+..+|
T Consensus 232 --~~~~l~~L~~L~l~~--N~l~~l~ 253 (454)
T 1jl5_A 232 --ELQNLPFLTTIYADN--NLLKTLP 253 (454)
T ss_dssp --CCTTCTTCCEEECCS--SCCSSCC
T ss_pred --ccCCCCCCCEEECCC--CcCCccc
Confidence 245667777777776 3455444
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.1e-17 Score=155.47 Aligned_cols=241 Identities=17% Similarity=0.211 Sum_probs=185.8
Q ss_pred CccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcCC
Q 039944 30 SLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYGC 109 (348)
Q Consensus 30 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~ 109 (348)
....++.++.. ++.+|.. +. . +++.|+++++ .+.. ++...+ ..+++ |+.|++++|
T Consensus 44 ~~~~v~c~~~~-l~~iP~~--------~~--~--~l~~L~L~~n-~i~~-~~~~~~---------~~l~~-L~~L~Ls~n 98 (440)
T 3zyj_A 44 QFSKVICVRKN-LREVPDG--------IS--T--NTRLLNLHEN-QIQI-IKVNSF---------KHLRH-LEILQLSRN 98 (440)
T ss_dssp TSCEEECCSCC-CSSCCSC--------CC--T--TCSEEECCSC-CCCE-ECTTTT---------SSCSS-CCEEECCSS
T ss_pred CCCEEEeCCCC-cCcCCCC--------CC--C--CCcEEEccCC-cCCe-eCHHHh---------hCCCC-CCEEECCCC
Confidence 45677776655 7888876 22 2 8999999985 4665 554333 33466 999999988
Q ss_pred CCcccchhhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCcccc-cccCCCCcceeEeccCCCCCcc
Q 039944 110 SKLGSIAERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEALPK-GMHNLTSLQYLRIGKGGALPSL 187 (348)
Q Consensus 110 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~ 187 (348)
......+..+..+++|++|++++| .+..++. .+..+++|+.|++++|. +..++. .+..+++|++|+++++..+..+
T Consensus 99 ~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 99 HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred cCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCccee
Confidence 744444577889999999999985 6667766 56778999999999964 666664 6788999999999998777777
Q ss_pred cc-cCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCC
Q 039944 188 EE-EDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFP 266 (348)
Q Consensus 188 ~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 266 (348)
+. .+..+++|+.|+++++ .+..++ .+..+++|+.|++++ +.+..++.. ++..+++|+.|+++++
T Consensus 177 ~~~~~~~l~~L~~L~L~~n-~l~~~~-----~~~~l~~L~~L~Ls~--N~l~~~~~~------~~~~l~~L~~L~L~~n- 241 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMC-NLREIP-----NLTPLIKLDELDLSG--NHLSAIRPG------SFQGLMHLQKLWMIQS- 241 (440)
T ss_dssp CTTTTTTCSSCCEEECTTS-CCSSCC-----CCTTCSSCCEEECTT--SCCCEECTT------TTTTCTTCCEEECTTC-
T ss_pred CcchhhcccccCeecCCCC-cCcccc-----ccCCCcccCEEECCC--CccCccChh------hhccCccCCEEECCCC-
Confidence 64 4678999999999995 566655 467889999999998 566666432 2357889999999995
Q ss_pred Cccccc-cccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEcCCc
Q 039944 267 NLERLS-SSIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRISRCP 313 (348)
Q Consensus 267 ~l~~i~-~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 313 (348)
.++.++ ..+..+++|+.|++++| .++.++...+ .++|+.|+++++|
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 666554 47889999999999995 7888887544 6899999999876
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=6.7e-19 Score=158.99 Aligned_cols=249 Identities=17% Similarity=0.174 Sum_probs=183.3
Q ss_pred CcccEEeecCcccccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCC
Q 039944 6 SSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKN 83 (348)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 83 (348)
++|++|+++++ .++.++...+ +++|+.|++++|. +..++.. .+..++ +|++|+++++ .++. ++..
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------~~~~l~--~L~~L~Ls~n-~l~~-~~~~ 118 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNG-INTIEED-------SFSSLG--SLEHLDLSYN-YLSN-LSSS 118 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTT-------TTTTCT--TCCEEECCSS-CCSS-CCHH
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCc-cCccCHh-------hcCCCC--CCCEEECCCC-cCCc-CCHh
Confidence 58999999985 6788877433 8999999999997 7877655 477777 9999999985 4555 4432
Q ss_pred CCCCCcceeEeccCCCCccEEEEcCCCCcccchh--hhcCCCccceecccccccccccC-CCCCCCCCccEEEEecCCCc
Q 039944 84 ELPATLESLEVGNLPLSLKSLFVYGCSKLGSIAE--RLDNNTSLETISIDSCGNLVSFP-EGGLPCAKLTRLTILDCKRL 160 (348)
Q Consensus 84 ~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l 160 (348)
.+ ..+++ |+.|++++|. +..++. .+..+++|++|++++|..+..++ ..+..+++|++|++++|...
T Consensus 119 ~~---------~~l~~-L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 119 WF---------KPLSS-LTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp HH---------TTCTT-CSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred Hh---------CCCcc-CCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 11 33466 9999999886 555654 67889999999999976676664 46777899999999997644
Q ss_pred CcccccccCCCCcceeEeccCCCCCccccc-CCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCccc-
Q 039944 161 EALPKGMHNLTSLQYLRIGKGGALPSLEEE-DGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMV- 238 (348)
Q Consensus 161 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~- 238 (348)
...|..+..+++|++|+++++. +..++.. ...+++|+.|+++++. +.......-........++.+++.+ + .+.
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~-~-~l~~ 263 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRN-V-KITD 263 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEES-C-BCCH
T ss_pred ccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-cccccccccccccccchhhcccccc-c-cccC
Confidence 4446788899999999999874 5666533 3457899999999964 4433211001123456778888876 2 332
Q ss_pred ----ccccchhccCCCCCCCCCccEEEeccCCCcccccccc-ccCCCcceEeccCCC
Q 039944 239 ----SFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSI-VDLQNLTELYLFGCP 290 (348)
Q Consensus 239 ----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~-~~~~~L~~L~l~~c~ 290 (348)
.+|... ..+++|++|++++ +.++.+|..+ ..+++|++|++++|+
T Consensus 264 ~~l~~l~~~l-------~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 264 ESLFQVMKLL-------NQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHH-------HTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhhHHHH-------hcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 345444 4678999999999 4788898864 899999999999975
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=2.4e-17 Score=158.60 Aligned_cols=246 Identities=26% Similarity=0.360 Sum_probs=161.4
Q ss_pred cccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCC
Q 039944 7 SLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELP 86 (348)
Q Consensus 7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 86 (348)
+++.|++++ +.++++|... +++|+.|++++|. ++.+|.. +. +|++|+++++ .++. +|. .+
T Consensus 41 ~l~~L~ls~-n~L~~lp~~l-~~~L~~L~L~~N~-l~~lp~~-----------l~--~L~~L~Ls~N-~l~~-lp~--~l 100 (622)
T 3g06_A 41 GNAVLNVGE-SGLTTLPDCL-PAHITTLVIPDNN-LTSLPAL-----------PP--ELRTLEVSGN-QLTS-LPV--LP 100 (622)
T ss_dssp CCCEEECCS-SCCSCCCSCC-CTTCSEEEECSCC-CSCCCCC-----------CT--TCCEEEECSC-CCSC-CCC--CC
T ss_pred CCcEEEecC-CCcCccChhh-CCCCcEEEecCCC-CCCCCCc-----------CC--CCCEEEcCCC-cCCc-CCC--CC
Confidence 477888876 4677777543 4788888888886 6766642 23 7888888875 3555 665 44
Q ss_pred CCcceeEec--------cCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCC
Q 039944 87 ATLESLEVG--------NLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCK 158 (348)
Q Consensus 87 ~~L~~L~i~--------~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 158 (348)
++|++|.+. ..+.+|+.|++++|. +..+|.. +++|++|++++| .+..+|.. +++|+.|++++|
T Consensus 101 ~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N- 171 (622)
T 3g06_A 101 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN- 171 (622)
T ss_dssp TTCCEEEECSCCCCCCCCCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-
T ss_pred CCCCEEECcCCcCCCCCCCCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCc---cCCCCEEECCCC-
Confidence 555555551 112247777777664 4445432 467777777764 45555542 346777777774
Q ss_pred CcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCccc
Q 039944 159 RLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMV 238 (348)
Q Consensus 159 ~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~ 238 (348)
.+..+| ..+++|+.|++++| .+..+|. .+++|+.|++.+| .+..++ ..+++|+.|++++ +.+.
T Consensus 172 ~l~~l~---~~~~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N-~l~~l~-------~~~~~L~~L~Ls~--N~L~ 234 (622)
T 3g06_A 172 QLTSLP---MLPSGLQELSVSDN-QLASLPT---LPSELYKLWAYNN-RLTSLP-------ALPSGLKELIVSG--NRLT 234 (622)
T ss_dssp CCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSSCC-------CCCTTCCEEECCS--SCCS
T ss_pred CCCCCc---ccCCCCcEEECCCC-CCCCCCC---ccchhhEEECcCC-cccccC-------CCCCCCCEEEccC--CccC
Confidence 455565 34577888888876 4555552 3577888888774 444443 2347788888887 4666
Q ss_pred ccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCC-CCCCCCcEEEEcCCc
Q 039944 239 SFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEK-GLPSSLLELRISRCP 313 (348)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~ 313 (348)
.+|. .+++|+.|++++ +.++.+|. .+++|+.|++++| .++.+|.. .-.++|+.|++++|+
T Consensus 235 ~lp~----------~l~~L~~L~Ls~-N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 235 SLPV----------LPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCCC----------CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred cCCC----------CCCcCcEEECCC-CCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 6663 457888888888 46777775 5678888888885 67777752 126788888888886
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.2e-17 Score=155.77 Aligned_cols=239 Identities=19% Similarity=0.188 Sum_probs=183.4
Q ss_pred ccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcCCC
Q 039944 31 LKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYGCS 110 (348)
Q Consensus 31 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~ 110 (348)
...++.++.. +..+|.. + +++++.|+++++ .+.. ++...+ ..++. |+.|++++|.
T Consensus 56 ~~~v~c~~~~-l~~iP~~--------~----~~~l~~L~L~~n-~i~~-~~~~~~---------~~l~~-L~~L~Ls~n~ 110 (452)
T 3zyi_A 56 FSKVVCTRRG-LSEVPQG--------I----PSNTRYLNLMEN-NIQM-IQADTF---------RHLHH-LEVLQLGRNS 110 (452)
T ss_dssp SCEEECCSSC-CSSCCSC--------C----CTTCSEEECCSS-CCCE-ECTTTT---------TTCTT-CCEEECCSSC
T ss_pred CcEEEECCCC-cCccCCC--------C----CCCccEEECcCC-cCce-ECHHHc---------CCCCC-CCEEECCCCc
Confidence 4566666654 7777765 2 238999999885 4665 544333 34476 9999999886
Q ss_pred CcccchhhhcCCCccceecccccccccccCCC-CCCCCCccEEEEecCCCcCcccc-cccCCCCcceeEeccCCCCCccc
Q 039944 111 KLGSIAERLDNNTSLETISIDSCGNLVSFPEG-GLPCAKLTRLTILDCKRLEALPK-GMHNLTSLQYLRIGKGGALPSLE 188 (348)
Q Consensus 111 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~ 188 (348)
.....+..+..+++|++|++++| .+..++.. +..+++|++|++++|. +..+|. .+..+++|++|++++|..+..++
T Consensus 111 i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 111 IRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred cCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 44444577889999999999985 56666664 6678999999999964 666664 57889999999999987888776
Q ss_pred c-cCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCccccccc-chhccCCCCCCCCCccEEEeccCC
Q 039944 189 E-EDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPL-EDKRLGTALPLPASLTSLWIEAFP 266 (348)
Q Consensus 189 ~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~ 266 (348)
. .+..+++|+.|+++++ .+..++ .+..+++|+.|++++ +.+..++. .. ..+++|+.|+++++
T Consensus 189 ~~~~~~l~~L~~L~L~~n-~l~~~~-----~~~~l~~L~~L~Ls~--N~l~~~~~~~~-------~~l~~L~~L~L~~n- 252 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMC-NIKDMP-----NLTPLVGLEELEMSG--NHFPEIRPGSF-------HGLSSLKKLWVMNS- 252 (452)
T ss_dssp TTTTTTCTTCCEEECTTS-CCSSCC-----CCTTCTTCCEEECTT--SCCSEECGGGG-------TTCTTCCEEECTTS-
T ss_pred hhhccCCCCCCEEECCCC-cccccc-----cccccccccEEECcC--CcCcccCcccc-------cCccCCCEEEeCCC-
Confidence 4 3678899999999995 456554 467889999999998 56666543 33 57889999999995
Q ss_pred Ccccc-ccccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEcCCc
Q 039944 267 NLERL-SSSIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRISRCP 313 (348)
Q Consensus 267 ~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 313 (348)
.+..+ +..+..+++|+.|++++| .++.++...+ .++|++|++++++
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 56555 557889999999999995 7888887544 6899999999886
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=6.3e-17 Score=150.79 Aligned_cols=219 Identities=25% Similarity=0.290 Sum_probs=123.7
Q ss_pred ccceeeeeCCCCccccccCCCCCCCcceeEec--------cCCCCccEEEEcCCCCcccchhhhcCCCccceeccccccc
Q 039944 64 LLEHLEIISCPSLTCIFSKNELPATLESLEVG--------NLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGN 135 (348)
Q Consensus 64 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~--------~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 135 (348)
+|++|+++++ .++. +|.....++|++|.+. ..+.+|+.|++++|. +..++ .+..+++|++|++++| .
T Consensus 132 ~L~~L~L~~n-~l~~-lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N-~ 206 (454)
T 1jl5_A 132 LLEYLGVSNN-QLEK-LPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN-S 206 (454)
T ss_dssp TCCEEECCSS-CCSS-CCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-C
T ss_pred CCCEEECcCC-CCCC-CcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC-c
Confidence 6777777664 3555 5544444566666651 112247777777764 44455 4677777888877774 4
Q ss_pred ccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhcc
Q 039944 136 LVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIER 215 (348)
Q Consensus 136 l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 215 (348)
+..+|... ++|+.|++++| .+..+| .+..+++|++|++++| .+..+|. .+++|+.|+++++ .+..++
T Consensus 207 l~~l~~~~---~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~--- 273 (454)
T 1jl5_A 207 LKKLPDLP---LSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLP--- 273 (454)
T ss_dssp CSSCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCC---
T ss_pred CCcCCCCc---CcccEEECcCC-cCCccc-ccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccC---
Confidence 44455432 46777777775 455666 4677778888888776 4555552 2467777777764 344333
Q ss_pred ccccCCCCCccEEEecccCCcccccccc---h-------hccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEe
Q 039944 216 GRGFHRFSSLRRLTISRCDEDMVSFPLE---D-------KRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELY 285 (348)
Q Consensus 216 ~~~~~~l~~L~~L~l~~~c~~l~~~~~~---~-------~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~ 285 (348)
..+++|+.|++++ +.+..++.. . ..+.+-...+++|++|++++ +.++.+|.. +++|+.|+
T Consensus 274 ----~~~~~L~~L~ls~--N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~-N~l~~lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 274 ----ELPQSLTFLDVSE--NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIELPAL---PPRLERLI 343 (454)
T ss_dssp ----CCCTTCCEEECCS--SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCS-SCCSCCCCC---CTTCCEEE
T ss_pred ----cccCcCCEEECcC--CccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCC-Ccccccccc---CCcCCEEE
Confidence 1235666666665 233333210 0 00000001234566666666 345555533 46677777
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEcCCc
Q 039944 286 LFGCPKLKYFPEKGLPSSLLELRISRCP 313 (348)
Q Consensus 286 l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 313 (348)
+++| .++.+|. .+++|++|++++|.
T Consensus 344 L~~N-~l~~lp~--~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 344 ASFN-HLAEVPE--LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCSS-CCSCCCC--CCTTCCEEECCSSC
T ss_pred CCCC-ccccccc--hhhhccEEECCCCC
Confidence 7764 5666665 45677777777664
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=7.4e-18 Score=149.04 Aligned_cols=223 Identities=19% Similarity=0.127 Sum_probs=151.7
Q ss_pred CccEEEEcCCCCcccchh-hhcCCCccceeccccccccccc---CCCCCCCCCccEEEEecCCCcCcccccccCCCCcce
Q 039944 100 SLKSLFVYGCSKLGSIAE-RLDNNTSLETISIDSCGNLVSF---PEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQY 175 (348)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~ 175 (348)
+++.|+++++. +..++. .+..+++|++|++++| .+..+ +.....+++|++|++++| .+..+|..+..+++|++
T Consensus 29 ~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCEEECCCCc-cCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 36666776655 344443 3566777777777664 23222 233334567778887775 35566666777888888
Q ss_pred eEeccCCCCCcccc--cCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccc--cccchhccCCCC
Q 039944 176 LRIGKGGALPSLEE--EDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVS--FPLEDKRLGTAL 251 (348)
Q Consensus 176 L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~--~~~~~~~~~~~~ 251 (348)
|+++++ .+..++. .+..+++|+.|+++++. +..... ..+..+++|+.|++++ +.+.. ++...
T Consensus 106 L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~--n~l~~~~~~~~~------- 171 (306)
T 2z66_A 106 LDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN---GIFNGLSSLEVLKMAG--NSFQENFLPDIF------- 171 (306)
T ss_dssp EECTTS-EEESSTTTTTTTTCTTCCEEECTTSC-CEECST---TTTTTCTTCCEEECTT--CEEGGGEECSCC-------
T ss_pred EECCCC-cccccccchhhhhccCCCEEECCCCc-CCccch---hhcccCcCCCEEECCC--CccccccchhHH-------
Confidence 888876 4444442 56778899999998864 333322 2567899999999998 45543 45544
Q ss_pred CCCCCccEEEeccCCCcccc-ccccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEcCCchhHHHhhccCCcccc
Q 039944 252 PLPASLTSLWIEAFPNLERL-SSSIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRISRCPLIAEKCRKDGGQYWD 328 (348)
Q Consensus 252 ~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 328 (348)
..+++|++|+++++ .++.+ +..+..+++|+.|++++| .++.++...+ .++|++|++++|.... .....+.
T Consensus 172 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~ 244 (306)
T 2z66_A 172 TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMT-----SKKQELQ 244 (306)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCB-----CSSSSCC
T ss_pred hhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcc-----cCHHHHH
Confidence 57889999999995 56655 568889999999999995 5776665333 6899999999985321 2222334
Q ss_pred CC-CCcCEEEecceeeccC
Q 039944 329 LL-THIPRVEIDWKSVFGD 346 (348)
Q Consensus 329 ~i-~~~~~~~~~~~~~~~~ 346 (348)
.+ .++..+.+.++.+.|+
T Consensus 245 ~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCTTCCEEECTTCCEECS
T ss_pred hhhccCCEEEccCCCeecc
Confidence 44 4788899999888775
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=4.5e-18 Score=144.98 Aligned_cols=201 Identities=15% Similarity=0.139 Sum_probs=157.2
Q ss_pred CCCccEEEEcCCCCcccch-hhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCcccc-cccCCCCcc
Q 039944 98 PLSLKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEALPK-GMHNLTSLQ 174 (348)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~ 174 (348)
|.+++.|+++++. ++.++ ..+..+++|++|++++|..+..++. .+..+++|++|++++|+.++.+++ .+..+++|+
T Consensus 30 ~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 30 PPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 4458999999876 55554 4678899999999998655777776 556788999999998566777764 568899999
Q ss_pred eeEeccCCCCCcccccCCCCCCcC---eeeecCCccchhhhhccccccCCCCCcc-EEEecccCCcccccccchhccCCC
Q 039944 175 YLRIGKGGALPSLEEEDGLPTNLQ---SLDIWGNMEIWKSMIERGRGFHRFSSLR-RLTISRCDEDMVSFPLEDKRLGTA 250 (348)
Q Consensus 175 ~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~l~~~~~~~~~~~~~l~~L~-~L~l~~~c~~l~~~~~~~~~~~~~ 250 (348)
+|++++| .+..+| .++.+++|+ .|+++++..+..++.. .+..+++|+ .|++++ +.+..++...
T Consensus 109 ~L~l~~n-~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~--n~l~~i~~~~------ 175 (239)
T 2xwt_C 109 FLGIFNT-GLKMFP-DLTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYN--NGFTSVQGYA------ 175 (239)
T ss_dssp EEEEEEE-CCCSCC-CCTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCS--CCCCEECTTT------
T ss_pred EEeCCCC-CCcccc-ccccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCC--CCCcccCHhh------
Confidence 9999987 567788 478888888 9999997567766642 578899999 999998 5777777654
Q ss_pred CCCCCCccEEEeccCCCcccccc-ccccC-CCcceEeccCCCCCCCCCCCCCCCCCcEEEEcCCchh
Q 039944 251 LPLPASLTSLWIEAFPNLERLSS-SIVDL-QNLTELYLFGCPKLKYFPEKGLPSSLLELRISRCPLI 315 (348)
Q Consensus 251 ~~~~~~L~~L~l~~~~~l~~i~~-~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 315 (348)
...++|++|+++++..++.++. .+..+ ++|+.|++++ +.++.+|.. .+++|+.|++++++.|
T Consensus 176 -~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 176 -FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp -TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred -cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 1336899999999645887765 57888 9999999999 578888875 5689999999998754
No 58
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=1.1e-17 Score=142.58 Aligned_cols=196 Identities=17% Similarity=0.220 Sum_probs=118.8
Q ss_pred cccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEec
Q 039944 16 CHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVG 95 (348)
Q Consensus 16 ~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~ 95 (348)
|..++++|. +.++|+.|+++++. ++.++.. .+..++ +|++|+++++..++. ++...+ .
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~-l~~i~~~-------~~~~l~--~L~~L~l~~n~~l~~-i~~~~f---------~ 77 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETH-LRTIPSH-------AFSNLP--NISRIYVSIDVTLQQ-LESHSF---------Y 77 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCC-CSEECTT-------TTTTCT--TCCEEEEECCSSCCE-ECTTTE---------E
T ss_pred ccCccccCC--CCCcccEEEEeCCc-ceEECHH-------HccCCC--CCcEEeCCCCCCcce-eCHhHc---------C
Confidence 555777776 56788888888887 7777765 466766 888888887644655 554332 3
Q ss_pred cCCCCccEEEEcCCCCcccch-hhhcCCCccceecccccccccccCCCCCCCCCcc---EEEEecCCCcCcccc-cccCC
Q 039944 96 NLPLSLKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLT---RLTILDCKRLEALPK-GMHNL 170 (348)
Q Consensus 96 ~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~---~L~l~~~~~l~~~~~-~l~~l 170 (348)
.+++ |+.|++++|..+..++ ..+..+++|++|++++| .+..+|. +..+++|+ .|++++|..++.+|+ .+..+
T Consensus 78 ~l~~-L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 78 NLSK-VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp SCTT-CCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred CCcC-CcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccch
Confidence 3465 8888888744455554 45667788888888774 4555665 55566666 777777645666654 35667
Q ss_pred CCcc-eeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCC-CCccEEEecccCCccccccc
Q 039944 171 TSLQ-YLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRF-SSLRRLTISRCDEDMVSFPL 242 (348)
Q Consensus 171 ~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~l~~~c~~l~~~~~ 242 (348)
++|+ +|+++++ .+..+|......++|+.|++.++..++.++.. .+..+ ++|+.|++++ +.+..+|.
T Consensus 155 ~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~---~~~~l~~~L~~L~l~~--N~l~~l~~ 222 (239)
T 2xwt_C 155 CNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD---AFGGVYSGPSLLDVSQ--TSVTALPS 222 (239)
T ss_dssp BSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTT---TTTTCSBCCSEEECTT--CCCCCCCC
T ss_pred hcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHH---HhhccccCCcEEECCC--CccccCCh
Confidence 7777 7777665 34455433222345555555554334333321 34444 5555555554 34444443
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=4.2e-18 Score=149.08 Aligned_cols=221 Identities=21% Similarity=0.248 Sum_probs=165.0
Q ss_pred cEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCC
Q 039944 9 EILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPAT 88 (348)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 88 (348)
+.++.++ ..++.+|. ..+++|++|+++++. +..++.. .+..++ +|++|+++++ .+.. +....+
T Consensus 14 ~~~~c~~-~~l~~ip~-~~~~~l~~L~l~~n~-i~~~~~~-------~~~~~~--~L~~L~l~~n-~l~~-~~~~~~--- 76 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPV-GIPAASQRIFLHGNR-ISHVPAA-------SFRACR--NLTILWLHSN-VLAR-IDAAAF--- 76 (285)
T ss_dssp CEEECCS-SCCSSCCT-TCCTTCSEEECTTSC-CCEECTT-------TTTTCT--TCCEEECCSS-CCCE-ECTTTT---
T ss_pred eEEEcCc-CCcccCCc-CCCCCceEEEeeCCc-CCccCHH-------HcccCC--CCCEEECCCC-ccce-eCHhhc---
Confidence 4566665 56777774 347899999999997 7888765 477777 9999999985 4655 433222
Q ss_pred cceeEeccCCCCccEEEEcCCCCcccc-hhhhcCCCccceeccccccccccc-CCCCCCCCCccEEEEecCCCcCcccc-
Q 039944 89 LESLEVGNLPLSLKSLFVYGCSKLGSI-AERLDNNTSLETISIDSCGNLVSF-PEGGLPCAKLTRLTILDCKRLEALPK- 165 (348)
Q Consensus 89 L~~L~i~~l~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~- 165 (348)
..++. |+.|++++|..+..+ +..+..+++|++|++++|. +..+ +..+..+++|++|++++|. +..++.
T Consensus 77 ------~~l~~-L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 147 (285)
T 1ozn_A 77 ------TGLAL-LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDD 147 (285)
T ss_dssp ------TTCTT-CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ------CCccC-CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHh
Confidence 33466 999999988756665 6778889999999999854 4444 5566778999999999964 555654
Q ss_pred cccCCCCcceeEeccCCCCCcccc-cCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccch
Q 039944 166 GMHNLTSLQYLRIGKGGALPSLEE-EDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLED 244 (348)
Q Consensus 166 ~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~ 244 (348)
.+..+++|++|++++| .+..++. .+..+++|+.|+++++. +..... ..+..+++|+.|++++ +.+..++...
T Consensus 148 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~--n~l~~~~~~~ 220 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHP---HAFRDLGRLMTLYLFA--NNLSALPTEA 220 (285)
T ss_dssp TTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECT---TTTTTCTTCCEEECCS--SCCSCCCHHH
T ss_pred HhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCH---hHccCcccccEeeCCC--CcCCcCCHHH
Confidence 4788999999999987 5666664 37788999999999964 444422 3577889999999998 5677666532
Q ss_pred hccCCCCCCCCCccEEEeccCCCc
Q 039944 245 KRLGTALPLPASLTSLWIEAFPNL 268 (348)
Q Consensus 245 ~~~~~~~~~~~~L~~L~l~~~~~l 268 (348)
+..+++|++|++++++..
T Consensus 221 ------~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 221 ------LAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ------HTTCTTCCEEECCSSCEE
T ss_pred ------cccCcccCEEeccCCCcc
Confidence 146789999999986433
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.3e-19 Score=161.25 Aligned_cols=152 Identities=9% Similarity=0.061 Sum_probs=62.9
Q ss_pred CCccceeccccccccccc-CCCCCCCCCccEEEEecCCCcCcc-cccc-cCCCCcceeEeccCCCCCcccccCCCCCCcC
Q 039944 122 NTSLETISIDSCGNLVSF-PEGGLPCAKLTRLTILDCKRLEAL-PKGM-HNLTSLQYLRIGKGGALPSLEEEDGLPTNLQ 198 (348)
Q Consensus 122 l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 198 (348)
+++|++|++++| .+..+ +..+..+++|+.|++++|. +..+ +..+ ..+++|++|++++| .+..++ ....+++|+
T Consensus 119 ~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~l~~L~ 194 (317)
T 3o53_A 119 GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVK-GQVVFAKLK 194 (317)
T ss_dssp CSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS-CCCEEE-CCCCCTTCC
T ss_pred cCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCC-cCcccc-cccccccCC
Confidence 344555555443 22222 2233334455555555432 2222 2222 23445555555544 233333 223344555
Q ss_pred eeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCc-ccccccccc
Q 039944 199 SLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNL-ERLSSSIVD 277 (348)
Q Consensus 199 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~i~~~~~~ 277 (348)
.|+++++ .+..++. .+..+++|+.|++++ +.+..+|... ..+++|+.|++++++.. ..++..+..
T Consensus 195 ~L~Ls~N-~l~~l~~----~~~~l~~L~~L~L~~--N~l~~l~~~~-------~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 195 TLDLSSN-KLAFMGP----EFQSAAGVTWISLRN--NKLVLIEKAL-------RFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp EEECCSS-CCCEECG----GGGGGTTCSEEECTT--SCCCEECTTC-------CCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred EEECCCC-cCCcchh----hhcccCcccEEECcC--CcccchhhHh-------hcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 5555543 2333321 233444555555554 3444444332 23444555555543222 133334444
Q ss_pred CCCcceEeccCCCC
Q 039944 278 LQNLTELYLFGCPK 291 (348)
Q Consensus 278 ~~~L~~L~l~~c~~ 291 (348)
++.|+.+++.+++.
T Consensus 261 ~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 261 NQRVQTVAKQTVKK 274 (317)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cccceEEECCCchh
Confidence 44555555444333
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=5.3e-17 Score=156.24 Aligned_cols=226 Identities=30% Similarity=0.360 Sum_probs=179.2
Q ss_pred CcccEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCC
Q 039944 6 SSLEILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNEL 85 (348)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 85 (348)
++|+.|+++++ .++.+|. .+++|++|++++|. ++.+|.. +++|++|+++++ .+.. ++. .
T Consensus 61 ~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~~-------------l~~L~~L~Ls~N-~l~~-l~~--~ 119 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-------------PPGLLELSIFSN-PLTH-LPA--L 119 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCCC-------------CTTCCEEEECSC-CCCC-CCC--C
T ss_pred CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCCC-------------CCCCCEEECcCC-cCCC-CCC--C
Confidence 68999999985 6888887 58999999999997 7877753 338999999885 5666 666 6
Q ss_pred CCCcceeEec---------cCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEec
Q 039944 86 PATLESLEVG---------NLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILD 156 (348)
Q Consensus 86 ~~~L~~L~i~---------~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 156 (348)
+++|+.|.+. .+++ |+.|++++|. +..++. .+++|+.|++++ +.+..+| ..+++|+.|++++
T Consensus 120 l~~L~~L~L~~N~l~~lp~~l~~-L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~-N~l~~l~---~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPVLPPG-LQELSVSDNQ-LASLPA---LPSELCKLWAYN-NQLTSLP---MLPSGLQELSVSD 190 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTT-CCEEECCSSC-CSCCCC---CCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCS
T ss_pred CCCcCEEECCCCCCCcCCCCCCC-CCEEECcCCc-CCCcCC---ccCCCCEEECCC-CCCCCCc---ccCCCCcEEECCC
Confidence 6888888772 2344 9999999885 555553 367899999998 5677777 3457999999999
Q ss_pred CCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCc
Q 039944 157 CKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDED 236 (348)
Q Consensus 157 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~ 236 (348)
| .+..+|.. +++|+.|++++| .+..+|. .+++|+.|++++| .+..++ ..+++|+.|++++ +.
T Consensus 191 N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~---~~~~L~~L~Ls~N-~L~~lp-------~~l~~L~~L~Ls~--N~ 252 (622)
T 3g06_A 191 N-QLASLPTL---PSELYKLWAYNN-RLTSLPA---LPSGLKELIVSGN-RLTSLP-------VLPSELKELMVSG--NR 252 (622)
T ss_dssp S-CCSCCCCC---CTTCCEEECCSS-CCSSCCC---CCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCS--SC
T ss_pred C-CCCCCCCc---cchhhEEECcCC-cccccCC---CCCCCCEEEccCC-ccCcCC-------CCCCcCcEEECCC--CC
Confidence 6 46667643 578999999987 5667762 3689999999995 566544 4568999999998 57
Q ss_pred ccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCC
Q 039944 237 MVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCP 290 (348)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 290 (348)
+..+|. .+++|+.|++++| .++.+|..+.++++|+.|++++|+
T Consensus 253 L~~lp~----------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 253 LTSLPM----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CSCCCC----------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCcCCc----------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 777776 4578999999995 788999999999999999999975
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=2.4e-17 Score=144.21 Aligned_cols=179 Identities=23% Similarity=0.272 Sum_probs=72.0
Q ss_pred hcCCCccceeccccccccccc-CCCCCCCCCccEEEEecCCCcCcc-cccccCCCCcceeEeccCCCCCcc-cccCCCCC
Q 039944 119 LDNNTSLETISIDSCGNLVSF-PEGGLPCAKLTRLTILDCKRLEAL-PKGMHNLTSLQYLRIGKGGALPSL-EEEDGLPT 195 (348)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~ 195 (348)
+..+++|++|++++| .+..+ +..+..+++|++|++++|..+..+ |..+..+++|++|++++|. +..+ +..+..++
T Consensus 52 ~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 52 FRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLA 129 (285)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred cccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCc
Confidence 344444444444442 22222 233334444444444443323333 2233444444444444432 2222 22234444
Q ss_pred CcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccc-ccc
Q 039944 196 NLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERL-SSS 274 (348)
Q Consensus 196 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~ 274 (348)
+|+.|+++++ .+...+. ..+..+++|+.|++++ +.+..++... +..+++|+.|+++++ .+..+ |..
T Consensus 130 ~L~~L~l~~n-~l~~~~~---~~~~~l~~L~~L~l~~--n~l~~~~~~~------~~~l~~L~~L~l~~n-~l~~~~~~~ 196 (285)
T 1ozn_A 130 ALQYLYLQDN-ALQALPD---DTFRDLGNLTHLFLHG--NRISSVPERA------FRGLHSLDRLLLHQN-RVAHVHPHA 196 (285)
T ss_dssp TCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECCS--SCCCEECTTT------TTTCTTCCEEECCSS-CCCEECTTT
T ss_pred CCCEEECCCC-cccccCH---hHhccCCCccEEECCC--CcccccCHHH------hcCccccCEEECCCC-cccccCHhH
Confidence 4444444442 2222221 1234444555555554 2333333311 123444555555543 23322 334
Q ss_pred cccCCCcceEeccCCCCCCCCCCC--CCCCCCcEEEEcCCc
Q 039944 275 IVDLQNLTELYLFGCPKLKYFPEK--GLPSSLLELRISRCP 313 (348)
Q Consensus 275 ~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~ 313 (348)
+.++++|+.|++++| .++.++.. .-.++|++|++++++
T Consensus 197 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 197 FRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 444555555555543 33333321 113455555555443
No 63
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=6.7e-17 Score=145.65 Aligned_cols=240 Identities=21% Similarity=0.233 Sum_probs=180.9
Q ss_pred cEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCC
Q 039944 9 EILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPAT 88 (348)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 88 (348)
++++.++ .+++++|.. .++++++|+++++. ++.++.+ .|..++ +|++|+++++..... ++...+
T Consensus 12 ~~v~C~~-~~Lt~iP~~-l~~~l~~L~Ls~N~-i~~i~~~-------~f~~l~--~L~~L~Ls~N~i~~~-i~~~~f--- 75 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSD-LPRNAIELRFVLTK-LRVIQKG-------AFSGFG--DLEKIEISQNDVLEV-IEADVF--- 75 (350)
T ss_dssp TEEEEES-TTCCSCCTT-CCTTCSEEEEESCC-CSEECTT-------SSTTCT--TCCEEEEECCTTCCE-ECTTSB---
T ss_pred CEEEecC-CCCCccCcC-cCCCCCEEEccCCc-CCCcCHH-------HHcCCC--CCCEEECcCCCCCCc-cChhHh---
Confidence 4566554 578888864 36789999999987 8999987 578888 999999998754443 555433
Q ss_pred cceeEeccCCCCccEEEEcCCCCcccc-hhhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCcccc-
Q 039944 89 LESLEVGNLPLSLKSLFVYGCSKLGSI-AERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEALPK- 165 (348)
Q Consensus 89 L~~L~i~~l~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~- 165 (348)
..+++ +.++...++..+..+ +..+..+++|++|++++| .+..++. ......++..+++.++..+..++.
T Consensus 76 ------~~L~~-l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 76 ------SNLPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp ------CSCTT-CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred ------hcchh-hhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccccccc
Confidence 23355 665544444556666 566788999999999984 5656655 334456788899988888888875
Q ss_pred cccCC-CCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccch
Q 039944 166 GMHNL-TSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLED 244 (348)
Q Consensus 166 ~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~ 244 (348)
.+..+ ..++.|+++++ .++.++.......+|+.+.+.+++.++.++.. .+..+++|+.|++++ +.++.+|.+
T Consensus 148 ~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~---~f~~l~~L~~LdLs~--N~l~~lp~~- 220 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPND---VFHGASGPVILDISR--TRIHSLPSY- 220 (350)
T ss_dssp SSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTT---TTTTEECCSEEECTT--SCCCCCCSS-
T ss_pred chhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHH---HhccCcccchhhcCC--CCcCccChh-
Confidence 33444 46888999986 67777766666778999999887888887753 578899999999998 688888873
Q ss_pred hccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccC
Q 039944 245 KRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFG 288 (348)
Q Consensus 245 ~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~ 288 (348)
.+..|+.|.+.+++.++.+| .+.++++|+.+++.+
T Consensus 221 --------~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 --------GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp --------SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred --------hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 46788999988888899988 478899999998864
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=2.3e-16 Score=152.89 Aligned_cols=113 Identities=17% Similarity=0.116 Sum_probs=74.2
Q ss_pred CCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccc-ccccccCCCcceEeccCCCCCCCCCCC
Q 039944 220 HRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERL-SSSIVDLQNLTELYLFGCPKLKYFPEK 298 (348)
Q Consensus 220 ~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~ 298 (348)
..++.|+.|++++ +.....+.. +.+..+++|++|++++| .++.+ |..+.++++|++|++++| +++.++..
T Consensus 466 ~~~~~L~~L~Ls~-N~~~~~~~~------~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~ 536 (635)
T 4g8a_A 466 NGLSSLEVLKMAG-NSFQENFLP------DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTF 536 (635)
T ss_dssp TTCTTCCEEECTT-CEEGGGEEC------SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCG
T ss_pred ccchhhhhhhhhh-cccccccCc------hhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChh
Confidence 4445566666655 322222221 22356788999999985 56655 557888999999999985 77777764
Q ss_pred CC--CCCCcEEEEcCCchhHHHhhccCCccccCC-CCcCEEEecceeeccC
Q 039944 299 GL--PSSLLELRISRCPLIAEKCRKDGGQYWDLL-THIPRVEIDWKSVFGD 346 (348)
Q Consensus 299 ~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~ 346 (348)
.+ .++|++|+++++.-.. ...+....+ .++..+.+.++.+.||
T Consensus 537 ~~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 537 PYKCLNSLQVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCB-----CCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred HHhCCCCCCEEECCCCcCCC-----CCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 33 6899999999885211 122223334 5788889999888775
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=9.7e-18 Score=157.72 Aligned_cols=168 Identities=8% Similarity=0.016 Sum_probs=78.4
Q ss_pred ccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCccccccc-CCCCcceeEec
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMH-NLTSLQYLRIG 179 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~-~l~~L~~L~l~ 179 (348)
|+.|++++|. +..++. ..+++|+.|++++|......|..+..+++|+.|++++|..-...|..+. .+++|++|+++
T Consensus 101 L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 101 IETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 5555555554 222221 1245555555555332222233444455556666555432222333332 45556666655
Q ss_pred cCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccE
Q 039944 180 KGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTS 259 (348)
Q Consensus 180 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~ 259 (348)
+| .+..++ ....+++|+.|+++++ .+..++. .+..+++|+.|++++ +.+..+|... ..+++|+.
T Consensus 178 ~N-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~----~~~~l~~L~~L~Ls~--N~l~~lp~~l-------~~l~~L~~ 241 (487)
T 3oja_A 178 YN-FIYDVK-GQVVFAKLKTLDLSSN-KLAFMGP----EFQSAAGVTWISLRN--NKLVLIEKAL-------RFSQNLEH 241 (487)
T ss_dssp TS-CCCEEE-CCCCCTTCCEEECCSS-CCCEECG----GGGGGTTCSEEECTT--SCCCEECTTC-------CCCTTCCE
T ss_pred CC-cccccc-ccccCCCCCEEECCCC-CCCCCCH----hHcCCCCccEEEecC--CcCcccchhh-------ccCCCCCE
Confidence 54 344444 3334555566665553 2333331 234555555566555 3444444433 34455555
Q ss_pred EEeccCCCc-cccccccccCCCcceEecc
Q 039944 260 LWIEAFPNL-ERLSSSIVDLQNLTELYLF 287 (348)
Q Consensus 260 L~l~~~~~l-~~i~~~~~~~~~L~~L~l~ 287 (348)
|++++++.. ..+|..+..++.|+.+++.
T Consensus 242 L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 555553322 1344444555555555543
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=2.1e-17 Score=146.90 Aligned_cols=213 Identities=18% Similarity=0.178 Sum_probs=122.6
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEc
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVY 107 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~ 107 (348)
+++|++|++++|. +..++.. .+..++ +|+.|+++++. +.. .+. +..++. |+.|+++
T Consensus 33 ~~~L~~L~L~~n~-l~~~~~~-------~~~~l~--~L~~L~Ls~n~-l~~-~~~-----------~~~l~~-L~~L~Ls 88 (317)
T 3o53_A 33 AWNVKELDLSGNP-LSQISAA-------DLAPFT--KLELLNLSSNV-LYE-TLD-----------LESLST-LRTLDLN 88 (317)
T ss_dssp GGGCSEEECTTSC-CCCCCHH-------HHTTCT--TCCEEECTTSC-CEE-EEE-----------ETTCTT-CCEEECC
T ss_pred CCCCCEEECcCCc-cCcCCHH-------HhhCCC--cCCEEECCCCc-CCc-chh-----------hhhcCC-CCEEECc
Confidence 5577777777775 5665543 356666 77777777643 433 221 123355 7777777
Q ss_pred CCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCccc-ccccCCCCcceeEeccCCCCCc
Q 039944 108 GCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALP-KGMHNLTSLQYLRIGKGGALPS 186 (348)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~ 186 (348)
+|. +..++ ..++|++|++++| .+..++... +++|+.|++++|. +..++ ..+..+++|++|++++| .+..
T Consensus 89 ~n~-l~~l~----~~~~L~~L~l~~n-~l~~~~~~~--~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 158 (317)
T 3o53_A 89 NNY-VQELL----VGPSIETLHAANN-NISRVSCSR--GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDT 158 (317)
T ss_dssp SSE-EEEEE----ECTTCCEEECCSS-CCSEEEECC--CSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCE
T ss_pred CCc-ccccc----CCCCcCEEECCCC-ccCCcCccc--cCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC-CCCc
Confidence 664 43332 3467777777763 344444332 4567777777754 34343 35566677777777765 3333
Q ss_pred cc-ccC-CCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEecc
Q 039944 187 LE-EED-GLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEA 264 (348)
Q Consensus 187 ~~-~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 264 (348)
++ ..+ ..+++|+.|+++++. +...+. ...+++|+.|++++ +.+..++... ..+++|+.|++++
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-----~~~l~~L~~L~Ls~--N~l~~l~~~~-------~~l~~L~~L~L~~ 223 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNF-IYDVKG-----QVVFAKLKTLDLSS--NKLAFMGPEF-------QSAAGVTWISLRN 223 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSC-CCEEEC-----CCCCTTCCEEECCS--SCCCEECGGG-------GGGTTCSEEECTT
T ss_pred ccHHHHhhccCcCCEEECCCCc-Cccccc-----ccccccCCEEECCC--CcCCcchhhh-------cccCcccEEECcC
Confidence 32 122 345677777776643 444331 23466777777776 4555555544 3456677777776
Q ss_pred CCCccccccccccCCCcceEeccCCC
Q 039944 265 FPNLERLSSSIVDLQNLTELYLFGCP 290 (348)
Q Consensus 265 ~~~l~~i~~~~~~~~~L~~L~l~~c~ 290 (348)
+.++.+|..+..+++|+.|++++|+
T Consensus 224 -N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 224 -NKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp -SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred -CcccchhhHhhcCCCCCEEEccCCC
Confidence 3566666666666777777777654
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=6.6e-16 Score=135.39 Aligned_cols=131 Identities=21% Similarity=0.249 Sum_probs=54.9
Q ss_pred ccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCccc-ccccCCCCcceeEec
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALP-KGMHNLTSLQYLRIG 179 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~ 179 (348)
|+.|+++++. +..++.. ..+++|++|++++ +.+..+|..+..+++|+.|++++| .++.+| ..+..+++|++|+++
T Consensus 57 L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 57 LTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132 (290)
T ss_dssp CCEEECTTSC-CCEEECC-SCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECT
T ss_pred CCEEECCCCc-cCcccCC-CCCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECC
Confidence 5555554443 3333221 3444555555544 233444444444445555555443 233333 233444455555554
Q ss_pred cCCCCCccccc-CCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCccccccc
Q 039944 180 KGGALPSLEEE-DGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPL 242 (348)
Q Consensus 180 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~ 242 (348)
+| .+..++.. +..+++|+.|+++++ .++.++.. .+..+++|+.|++++ +.+..+|.
T Consensus 133 ~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~---~~~~l~~L~~L~L~~--N~l~~ip~ 189 (290)
T 1p9a_G 133 GN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAG---LLNGLENLDTLLLQE--NSLYTIPK 189 (290)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTT---TTTTCTTCCEEECCS--SCCCCCCT
T ss_pred CC-CCCccChhhcccccCCCEEECCCC-cCCccCHH---HhcCcCCCCEEECCC--CcCCccCh
Confidence 44 23333311 233444555555442 23333321 233444455555544 34444444
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=1.2e-15 Score=133.83 Aligned_cols=200 Identities=19% Similarity=0.180 Sum_probs=148.4
Q ss_pred cccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccc
Q 039944 57 SRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNL 136 (348)
Q Consensus 57 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 136 (348)
++++. +++++++.+. .++. +|.. + |.+++.|+++++......+..+..+++|++|++++ +.+
T Consensus 6 ~~~l~--~l~~l~~~~~-~l~~-ip~~-~------------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l 67 (290)
T 1p9a_G 6 VSKVA--SHLEVNCDKR-NLTA-LPPD-L------------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AEL 67 (290)
T ss_dssp EECST--TCCEEECTTS-CCSS-CCSC-C------------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCC
T ss_pred ccccC--CccEEECCCC-CCCc-CCCC-C------------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-Ccc
Confidence 46666 8999999874 5666 6643 2 34589999998875444467788899999999998 456
Q ss_pred cccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCccc-ccCCCCCCcCeeeecCCccchhhhhcc
Q 039944 137 VSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLE-EEDGLPTNLQSLDIWGNMEIWKSMIER 215 (348)
Q Consensus 137 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~ 215 (348)
..++.. ..+++|+.|++++| .+..+|..+..+++|++|++++| .++.++ ..+..+++|+.|+++++ .+..++..
T Consensus 68 ~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~- 142 (290)
T 1p9a_G 68 TKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPG- 142 (290)
T ss_dssp CEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTT-
T ss_pred CcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChh-
Confidence 666654 56789999999985 57788877788899999999987 555655 34677888888888885 45555432
Q ss_pred ccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCC
Q 039944 216 GRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCP 290 (348)
Q Consensus 216 ~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 290 (348)
.+..+++|+.|++++ +.+..++... +..+++|+.|++++ +.++.+|..+...++|+.+++++++
T Consensus 143 --~~~~l~~L~~L~L~~--N~l~~l~~~~------~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 143 --LLTPTPKLEKLSLAN--NNLTELPAGL------LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --TTTTCTTCCEEECTT--SCCSCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred --hcccccCCCEEECCC--CcCCccCHHH------hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 467788888888887 5677776643 24567888888887 5777888877777888888888765
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1e-17 Score=148.56 Aligned_cols=201 Identities=15% Similarity=0.091 Sum_probs=137.5
Q ss_pred CCCccEEEEcCCCCcccchhhh--cCCCccceecccccccccccCCCCCCC-----CCccEEEEecCCCcCccc-ccccC
Q 039944 98 PLSLKSLFVYGCSKLGSIAERL--DNNTSLETISIDSCGNLVSFPEGGLPC-----AKLTRLTILDCKRLEALP-KGMHN 169 (348)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~L~~L~l~~~~~l~~~~-~~l~~ 169 (348)
+. |++|++++|.....+|..+ ..+++|++|++++| .+..+|..+..+ ++|++|++++|. +..++ ..+..
T Consensus 95 ~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~ 171 (312)
T 1wwl_A 95 SG-LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV 171 (312)
T ss_dssp SC-CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC
T ss_pred CC-ccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc
Confidence 55 8888888887555666555 77888888888884 454445433333 789999998865 44444 67788
Q ss_pred CCCcceeEeccCCCCCc--ccccC--CCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchh
Q 039944 170 LTSLQYLRIGKGGALPS--LEEED--GLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDK 245 (348)
Q Consensus 170 l~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~ 245 (348)
+++|++|++++|..... ++... +.+++|+.|+++++. +...+......+..+++|+.|++++ +.+...+...
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~- 247 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSH--NSLRDAAGAP- 247 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTT--SCCCSSCCCS-
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCC--CcCCcccchh-
Confidence 88999999988753322 22233 678899999998853 4422211002345778999999998 4555543110
Q ss_pred ccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCCCCCCcEEEEcCCc
Q 039944 246 RLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGLPSSLLELRISRCP 313 (348)
Q Consensus 246 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 313 (348)
.+..+++|++|++++ +.++.+|..+. ++|++|+++++ .++.+|...-.++|++|++++++
T Consensus 248 ----~~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 248 ----SCDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp ----CCCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred ----hhhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 113567899999998 46778887666 88999999984 67777764447889999998875
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=2.5e-16 Score=148.03 Aligned_cols=214 Identities=18% Similarity=0.155 Sum_probs=125.4
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEc
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVY 107 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~ 107 (348)
+++|+.|++++|. +..++.. .+..++ +|+.|+++++. +.. .+. +..++. |+.|+++
T Consensus 33 ~~~L~~L~Ls~n~-l~~~~~~-------~~~~l~--~L~~L~Ls~N~-l~~-~~~-----------l~~l~~-L~~L~Ls 88 (487)
T 3oja_A 33 AWNVKELDLSGNP-LSQISAA-------DLAPFT--KLELLNLSSNV-LYE-TLD-----------LESLST-LRTLDLN 88 (487)
T ss_dssp GGGCCEEECCSSC-CCCCCGG-------GGTTCT--TCCEEECTTSC-CEE-EEE-----------CTTCTT-CCEEECC
T ss_pred CCCccEEEeeCCc-CCCCCHH-------HHhCCC--CCCEEEeeCCC-CCC-Ccc-----------cccCCC-CCEEEec
Confidence 4477888887776 6665544 356666 77788777653 443 221 123355 7777777
Q ss_pred CCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCc-
Q 039944 108 GCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPS- 186 (348)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~- 186 (348)
+|. +..++ ..++|++|++++| .+..++.. .+++|+.|++++|..-...|..+..+++|++|++++|. +..
T Consensus 89 ~N~-l~~l~----~~~~L~~L~L~~N-~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 159 (487)
T 3oja_A 89 NNY-VQELL----VGPSIETLHAANN-NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTV 159 (487)
T ss_dssp SSE-EEEEE----ECTTCCEEECCSS-CCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEE
T ss_pred CCc-CCCCC----CCCCcCEEECcCC-cCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCc
Confidence 664 44433 2367777777764 34444332 24567777777754333334455667777777777663 333
Q ss_pred ccccCC-CCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccC
Q 039944 187 LEEEDG-LPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAF 265 (348)
Q Consensus 187 ~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 265 (348)
.|..+. .+++|+.|++++|. +...+ ....+++|+.|++++ +.+..++... ..+++|+.|++++
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~-l~~~~-----~~~~l~~L~~L~Ls~--N~l~~~~~~~-------~~l~~L~~L~Ls~- 223 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNF-IYDVK-----GQVVFAKLKTLDLSS--NKLAFMGPEF-------QSAAGVTWISLRN- 223 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSC-CCEEE-----CCCCCTTCCEEECCS--SCCCEECGGG-------GGGTTCSEEECTT-
T ss_pred ChHHHhhhCCcccEEecCCCc-ccccc-----ccccCCCCCEEECCC--CCCCCCCHhH-------cCCCCccEEEecC-
Confidence 232332 46677777777643 44433 123466777777776 4555555544 3456677777776
Q ss_pred CCccccccccccCCCcceEeccCCC
Q 039944 266 PNLERLSSSIVDLQNLTELYLFGCP 290 (348)
Q Consensus 266 ~~l~~i~~~~~~~~~L~~L~l~~c~ 290 (348)
+.+..+|..+..+++|+.|++++|+
T Consensus 224 N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 224 NKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CcCcccchhhccCCCCCEEEcCCCC
Confidence 4566666666666777777777654
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=2.9e-16 Score=139.19 Aligned_cols=207 Identities=17% Similarity=0.142 Sum_probs=143.0
Q ss_pred CCCccceecccccccccccCCCC--CCCCCccEEEEecCCCcCcccccccCC-----CCcceeEeccCCCCCccc-ccCC
Q 039944 121 NNTSLETISIDSCGNLVSFPEGG--LPCAKLTRLTILDCKRLEALPKGMHNL-----TSLQYLRIGKGGALPSLE-EEDG 192 (348)
Q Consensus 121 ~l~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~-~~~~ 192 (348)
.+++|++|++++|.....+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++|. +..++ ..++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhc
Confidence 68899999999865444677765 678899999999864 55556655555 899999999874 45554 5678
Q ss_pred CCCCcCeeeecCCccchh--hhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccc
Q 039944 193 LPTNLQSLDIWGNMEIWK--SMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLER 270 (348)
Q Consensus 193 ~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 270 (348)
.+++|+.|+++++..... .+.. ..+..+++|++|++++ +.+..++.... ..+..+++|++|+++++ .++.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~L~~--N~l~~~~~~~~---~~~~~l~~L~~L~Ls~N-~l~~ 242 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISA--LCPLKFPTLQVLALRN--AGMETPSGVCS---ALAAARVQLQGLDLSHN-SLRD 242 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHH--SCTTSCTTCCEEECTT--SCCCCHHHHHH---HHHHTTCCCSEEECTTS-CCCS
T ss_pred cCCCCCEEECCCCCcCcchHHHHH--HHhccCCCCCEEECCC--CcCcchHHHHH---HHHhcCCCCCEEECCCC-cCCc
Confidence 889999999998754332 1211 2347889999999998 45653322110 00024578999999984 5655
Q ss_pred cc--cccccCCCcceEeccCCCCCCCCCCCCCCCCCcEEEEcCCchhHHHhhccCCccccCCCCcCEEEecceeeccC
Q 039944 271 LS--SSIVDLQNLTELYLFGCPKLKYFPEKGLPSSLLELRISRCPLIAEKCRKDGGQYWDLLTHIPRVEIDWKSVFGD 346 (348)
Q Consensus 271 i~--~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 346 (348)
.+ ..+..+++|++|++++| .++.+|.. ++++|++|++++|.- +.. ..+..+.++..+.+.++.+.+.
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~l-~~~------p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFT-GLKQVPKG-LPAKLSVLDLSYNRL-DRN------PSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTS-CCSSCCSS-CCSEEEEEECCSSCC-CSC------CCTTTSCEEEEEECTTCTTTCC
T ss_pred ccchhhhhhcCCCCEEECCCC-ccChhhhh-ccCCceEEECCCCCC-CCC------hhHhhCCCCCEEeccCCCCCCC
Confidence 43 35566789999999985 67788774 338999999998852 211 1255667788888888776654
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=7.8e-15 Score=132.13 Aligned_cols=241 Identities=16% Similarity=0.121 Sum_probs=178.1
Q ss_pred cEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcCCCC
Q 039944 32 KKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYGCSK 111 (348)
Q Consensus 32 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~~ 111 (348)
++++.++.. ++++|.. + .+ ++++|++++ +.++. ++.+.+ ..+++ |+.|++++|..
T Consensus 12 ~~v~C~~~~-Lt~iP~~--------l--~~--~l~~L~Ls~-N~i~~-i~~~~f---------~~l~~-L~~L~Ls~N~i 66 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSD--------L--PR--NAIELRFVL-TKLRV-IQKGAF---------SGFGD-LEKIEISQNDV 66 (350)
T ss_dssp TEEEEESTT-CCSCCTT--------C--CT--TCSEEEEES-CCCSE-ECTTSS---------TTCTT-CCEEEEECCTT
T ss_pred CEEEecCCC-CCccCcC--------c--CC--CCCEEEccC-CcCCC-cCHHHH---------cCCCC-CCEEECcCCCC
Confidence 456666654 8888876 2 23 899999998 46777 776544 34476 99999999987
Q ss_pred cccch-hhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCcccc-cccCCCCcceeEeccCCCCCccc
Q 039944 112 LGSIA-ERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEALPK-GMHNLTSLQYLRIGKGGALPSLE 188 (348)
Q Consensus 112 ~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~ 188 (348)
.+.++ ..+.+++++..+.+..++.+..++. .+..+++|+.|++++|. +..+|+ ......++..+++.++..+..++
T Consensus 67 ~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred CCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhcccccccccc
Confidence 67665 4567888888776666677878765 55678999999999964 566654 33456678888888776777766
Q ss_pred cc-CCC-CCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCC
Q 039944 189 EE-DGL-PTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFP 266 (348)
Q Consensus 189 ~~-~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 266 (348)
.. +.. ...++.|++++ +.++.++. ......+|+.+++.+ ++.++.+|.+. +..+++|++|++++ +
T Consensus 146 ~~~f~~~~~~l~~L~L~~-N~i~~i~~----~~f~~~~L~~l~l~~-~n~l~~i~~~~------f~~l~~L~~LdLs~-N 212 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNK-NGIQEIHN----SAFNGTQLDELNLSD-NNNLEELPNDV------FHGASGPVILDISR-T 212 (350)
T ss_dssp TTSSTTSBSSCEEEECCS-SCCCEECT----TSSTTEEEEEEECTT-CTTCCCCCTTT------TTTEECCSEEECTT-S
T ss_pred ccchhhcchhhhhhcccc-ccccCCCh----hhccccchhHHhhcc-CCcccCCCHHH------hccCcccchhhcCC-C
Confidence 32 233 35688999998 45666653 233457899999988 78888888743 35778999999998 5
Q ss_pred CccccccccccCCCcceEeccCCCCCCCCCCCCCCCCCcEEEEcCCc
Q 039944 267 NLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGLPSSLLELRISRCP 313 (348)
Q Consensus 267 ~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 313 (348)
.++.+|.. .+.+|+.|.+.+++.++.+|...-+++|+.+++.+..
T Consensus 213 ~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 213 RIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred CcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence 89989863 3678889998889999999985457899999997543
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=1.4e-15 Score=132.35 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=28.0
Q ss_pred EEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccc-cccCCCcceEeccCC
Q 039944 227 RLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSS-IVDLQNLTELYLFGC 289 (348)
Q Consensus 227 ~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~c 289 (348)
.|++++ +.+..++... ....+|++|+++++ .++.+|.. +..+++|+.|+++++
T Consensus 181 ~L~ls~--n~l~~~~~~~-------~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 181 SLDLSL--NPMNFIQPGA-------FKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp EEECCS--SCCCEECTTS-------SCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred eeecCC--CcccccCccc-------cCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 556665 4444444432 12235666666663 45555542 355666666666654
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=1.6e-15 Score=134.14 Aligned_cols=197 Identities=15% Similarity=0.161 Sum_probs=144.2
Q ss_pred ccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceeccccccccc
Q 039944 58 RRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLV 137 (348)
Q Consensus 58 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 137 (348)
..+. +|++|++.++. +.. ++. + ..++. |+.|++++|. +..++. +..+++|++|++++| .+.
T Consensus 38 ~~l~--~L~~L~l~~~~-i~~-l~~------~-----~~l~~-L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n-~l~ 98 (308)
T 1h6u_A 38 ADLD--GITTLSAFGTG-VTT-IEG------V-----QYLNN-LIGLELKDNQ-ITDLAP-LKNLTKITELELSGN-PLK 98 (308)
T ss_dssp HHHH--TCCEEECTTSC-CCC-CTT------G-----GGCTT-CCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC-CCS
T ss_pred HHcC--CcCEEEeeCCC-ccC-chh------h-----hccCC-CCEEEccCCc-CCCChh-HccCCCCCEEEccCC-cCC
Confidence 4566 89999998863 544 432 2 33466 9999998875 555655 888999999999885 465
Q ss_pred ccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhcccc
Q 039944 138 SFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGR 217 (348)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 217 (348)
.++ .+..+++|+.|++++|. +..++ .+..+++|++|++++| .+..++ .++.+++|+.|+++++ .+...+
T Consensus 99 ~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~----- 167 (308)
T 1h6u_A 99 NVS-AIAGLQSIKTLDLTSTQ-ITDVT-PLAGLSNLQVLYLDLN-QITNIS-PLAGLTNLQYLSIGNA-QVSDLT----- 167 (308)
T ss_dssp CCG-GGTTCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCCCG-----
T ss_pred Cch-hhcCCCCCCEEECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCcCc-cccCCCCccEEEccCC-cCCCCh-----
Confidence 554 46667889999998864 56665 3788899999999887 566666 4777889999999885 455544
Q ss_pred ccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCC
Q 039944 218 GFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPE 297 (348)
Q Consensus 218 ~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 297 (348)
.+..+++|+.|++++ +.+..++.. ..+++|++|++++| .+..++ .+..+++|+.|++++|+ ++..|.
T Consensus 168 ~l~~l~~L~~L~l~~--n~l~~~~~l--------~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 168 PLANLSKLTTLKADD--NKISDISPL--------ASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp GGTTCTTCCEEECCS--SCCCCCGGG--------GGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred hhcCCCCCCEEECCC--CccCcChhh--------cCCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccCCe-eecCCe
Confidence 267888999999988 566666552 36778999999884 677666 37888999999998853 555443
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=1.7e-15 Score=131.72 Aligned_cols=196 Identities=21% Similarity=0.254 Sum_probs=144.9
Q ss_pred CCCccEEEEcCCCCcccc-hhhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCccc-ccccCCCCcc
Q 039944 98 PLSLKSLFVYGCSKLGSI-AERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEALP-KGMHNLTSLQ 174 (348)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~ 174 (348)
|.+++.|+++++. +..+ +..+..+++|++|++++| .+..++. .+..+++|++|++++|. +..++ ..+..+++|+
T Consensus 27 ~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 27 PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQ 103 (276)
T ss_dssp CTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCC
T ss_pred CCCccEEECCCCc-ccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCcccc
Confidence 4458999998876 4444 447888999999999985 5555554 56778899999999865 45554 5678899999
Q ss_pred eeEeccCCCCCcccc-cCCCCCCcCeeeecCCccchh--hhhccccccCCCCCccEEEecccCCcccccccchhccCCCC
Q 039944 175 YLRIGKGGALPSLEE-EDGLPTNLQSLDIWGNMEIWK--SMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTAL 251 (348)
Q Consensus 175 ~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~ 251 (348)
+|+++++ .+..++. .++.+++|+.|+++++. +.. ++ ..+..+++|+.|++++ +.+..++... +
T Consensus 104 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~----~~~~~l~~L~~L~Ls~--N~l~~~~~~~------~ 169 (276)
T 2z62_A 104 KLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLP----EYFSNLTNLEHLDLSS--NKIQSIYCTD------L 169 (276)
T ss_dssp EEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCC----GGGGGCTTCCEEECCS--SCCCEECGGG------G
T ss_pred EEECCCC-CccccCchhcccCCCCCEEECcCCc-cceecCc----hhhccCCCCCEEECCC--CCCCcCCHHH------h
Confidence 9999987 4555543 47788999999999854 443 23 3577899999999998 5666655421 0
Q ss_pred CCCCCcc----EEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEcCC
Q 039944 252 PLPASLT----SLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRISRC 312 (348)
Q Consensus 252 ~~~~~L~----~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c 312 (348)
..+++|+ .|++++ +.++.++.......+|+.|++++| .++.++...+ .++|++|+++++
T Consensus 170 ~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp HHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred hhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 1233444 899998 577777776666679999999995 5888887543 789999999954
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=9.6e-15 Score=126.63 Aligned_cols=173 Identities=25% Similarity=0.303 Sum_probs=79.4
Q ss_pred ccEEEEcCCCCcccc-hhhhcCCCccceecccccccccccCCCC-CCCCCccEEEEecCCCcCcccc-cccCCCCcceeE
Q 039944 101 LKSLFVYGCSKLGSI-AERLDNNTSLETISIDSCGNLVSFPEGG-LPCAKLTRLTILDCKRLEALPK-GMHNLTSLQYLR 177 (348)
Q Consensus 101 L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~ 177 (348)
++.|+++++. +..+ +..+..+++|++|++++ +.+..++... ..+++|++|++++|. +..+|. .+..+++|++|+
T Consensus 39 l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 39 TKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp CSEEECCSSC-CSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEE
T ss_pred CCEEECcCCC-CCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEE
Confidence 5555555444 2222 23445555555555555 2333444332 334555555555532 333332 234555555555
Q ss_pred eccCCCCCccc-ccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCC
Q 039944 178 IGKGGALPSLE-EEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPAS 256 (348)
Q Consensus 178 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~ 256 (348)
++++ .+..++ ..++.+++|+.|+++++ .+..++. ..+..+++|+.|++++ +.+..++... +..+++
T Consensus 116 l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~~~l~~L~~L~L~~--n~l~~~~~~~------~~~l~~ 182 (270)
T 2o6q_A 116 LDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPK---GVFDKLTSLKELRLYN--NQLKRVPEGA------FDKLTE 182 (270)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECCS--SCCSCCCTTT------TTTCTT
T ss_pred CCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccCH---hHccCCcccceeEecC--CcCcEeChhH------hccCCC
Confidence 5554 233332 12344555555555553 2333332 1244555555555555 3344443321 123455
Q ss_pred ccEEEeccCCCcccccc-ccccCCCcceEeccCCC
Q 039944 257 LTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGCP 290 (348)
Q Consensus 257 L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~ 290 (348)
|++|+++++ .++.++. .+..+++|+.|++++++
T Consensus 183 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 183 LKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 555555553 4444443 24455555555555543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.3e-14 Score=125.88 Aligned_cols=131 Identities=22% Similarity=0.311 Sum_probs=56.4
Q ss_pred cCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCcccc-cccCCCCcceeEeccCCCCCccccc-CCCCCC
Q 039944 120 DNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEALPK-GMHNLTSLQYLRIGKGGALPSLEEE-DGLPTN 196 (348)
Q Consensus 120 ~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~ 196 (348)
..+++|++|++++| .+..++. .+..+++|+.|++++|. +..+++ .+..+++|++|++++| .+..++.. +..+++
T Consensus 82 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 82 KELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTS 158 (270)
T ss_dssp SSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred cCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcc
Confidence 34444444444442 2333332 22334445555554432 222322 2344555555555544 23333321 344455
Q ss_pred cCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccC
Q 039944 197 LQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAF 265 (348)
Q Consensus 197 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 265 (348)
|+.|+++++ .+..++. ..+..+++|+.|++++ +.+..++... +..+++|+.|+++++
T Consensus 159 L~~L~L~~n-~l~~~~~---~~~~~l~~L~~L~L~~--N~l~~~~~~~------~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 159 LKELRLYNN-QLKRVPE---GAFDKLTELKTLKLDN--NQLKRVPEGA------FDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCEEECCSS-CCSCCCT---TTTTTCTTCCEEECCS--SCCSCCCTTT------TTTCTTCCEEECCSS
T ss_pred cceeEecCC-cCcEeCh---hHhccCCCcCEEECCC--CcCCcCCHHH------hccccCCCEEEecCC
Confidence 555555553 2333222 1244555555555555 3444444321 123455556666553
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=4.1e-15 Score=131.52 Aligned_cols=195 Identities=16% Similarity=0.184 Sum_probs=137.4
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEc
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVY 107 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~ 107 (348)
+++|++|++++|. +..++. +..++ +|++|+++++ .+.+ ++. + ..+++ |+.|+++
T Consensus 40 l~~L~~L~l~~~~-i~~l~~---------~~~l~--~L~~L~L~~n-~i~~-~~~------~-----~~l~~-L~~L~L~ 93 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTIEG---------VQYLN--NLIGLELKDN-QITD-LAP------L-----KNLTK-ITELELS 93 (308)
T ss_dssp HHTCCEEECTTSC-CCCCTT---------GGGCT--TCCEEECCSS-CCCC-CGG------G-----TTCCS-CCEEECC
T ss_pred cCCcCEEEeeCCC-ccCchh---------hhccC--CCCEEEccCC-cCCC-Chh------H-----ccCCC-CCEEEcc
Confidence 6778888888886 666652 46666 8888888875 3544 332 1 33365 8888888
Q ss_pred CCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcc
Q 039944 108 GCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSL 187 (348)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~ 187 (348)
+|. +..++ .+..+++|++|++++| .+..++. +..+++|+.|++++| .+..++. +..+++|++|++++| .+..+
T Consensus 94 ~n~-l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~ 166 (308)
T 1h6u_A 94 GNP-LKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNA-QVSDL 166 (308)
T ss_dssp SCC-CSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCC
T ss_pred CCc-CCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCC-cCCCC
Confidence 776 55554 5777888888888874 4555554 566788888888885 4555654 778888889988887 56666
Q ss_pred cccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCC
Q 039944 188 EEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPN 267 (348)
Q Consensus 188 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 267 (348)
+ .+..+++|+.|+++++ .+...+ .+..+++|+.|++++ +.+..++. . ..+++|+.|+++++ .
T Consensus 167 ~-~l~~l~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~L~~--N~l~~~~~-l-------~~l~~L~~L~l~~N-~ 228 (308)
T 1h6u_A 167 T-PLANLSKLTTLKADDN-KISDIS-----PLASLPNLIEVHLKN--NQISDVSP-L-------ANTSNLFIVTLTNQ-T 228 (308)
T ss_dssp G-GGTTCTTCCEEECCSS-CCCCCG-----GGGGCTTCCEEECTT--SCCCBCGG-G-------TTCTTCCEEEEEEE-E
T ss_pred h-hhcCCCCCCEEECCCC-ccCcCh-----hhcCCCCCCEEEccC--CccCcccc-c-------cCCCCCCEEEccCC-e
Confidence 6 4778888999988885 455544 256788899999988 46666654 2 36788999999884 5
Q ss_pred cccccc
Q 039944 268 LERLSS 273 (348)
Q Consensus 268 l~~i~~ 273 (348)
+...|.
T Consensus 229 i~~~~~ 234 (308)
T 1h6u_A 229 ITNQPV 234 (308)
T ss_dssp EECCCE
T ss_pred eecCCe
Confidence 655554
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.7e-16 Score=142.04 Aligned_cols=244 Identities=14% Similarity=0.078 Sum_probs=162.4
Q ss_pred CCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcC
Q 039944 29 SSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYG 108 (348)
Q Consensus 29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~ 108 (348)
..++.++++++. +. +. .+..+..++++.+++.++ .+.. .+.. + ..++. |+.|++++
T Consensus 47 ~~~~~l~l~~~~-~~--~~--------~~~~~~~~~l~~L~l~~n-~l~~-~~~~-----~-----~~~~~-L~~L~L~~ 102 (336)
T 2ast_B 47 SLWQTLDLTGKN-LH--PD--------VTGRLLSQGVIAFRCPRS-FMDQ-PLAE-----H-----FSPFR-VQHMDLSN 102 (336)
T ss_dssp TTSSEEECTTCB-CC--HH--------HHHHHHHTTCSEEECTTC-EECS-CCCS-----C-----CCCBC-CCEEECTT
T ss_pred hhheeecccccc-CC--HH--------HHHhhhhccceEEEcCCc-cccc-cchh-----h-----ccCCC-CCEEEccC
Confidence 347888888765 33 11 134441127888888774 3443 2211 1 23365 99999998
Q ss_pred CCCccc-chhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCc--ccccccCCCCcceeEeccCCCCC
Q 039944 109 CSKLGS-IAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEA--LPKGMHNLTSLQYLRIGKGGALP 185 (348)
Q Consensus 109 ~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~l~~l~~L~~L~l~~~~~~~ 185 (348)
|..... ++..+..+++|++|++++|......+..+..+++|++|++++|..+.. ++..+..+++|++|++++|..+.
T Consensus 103 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 863323 667788899999999998754334555556688999999999866663 55556788999999999885555
Q ss_pred c--ccccCCCCC-CcCeeeecCCc-cch--hhhhccccccCCCCCccEEEecccCCccc-ccccchhccCCCCCCCCCcc
Q 039944 186 S--LEEEDGLPT-NLQSLDIWGNM-EIW--KSMIERGRGFHRFSSLRRLTISRCDEDMV-SFPLEDKRLGTALPLPASLT 258 (348)
Q Consensus 186 ~--~~~~~~~~~-~L~~L~l~~~~-~l~--~~~~~~~~~~~~l~~L~~L~l~~~c~~l~-~~~~~~~~~~~~~~~~~~L~ 258 (348)
. ++..+..++ +|+.|++++|. .+. .++ ..+..+++|+.|++++ |..+. ..+... ..+++|+
T Consensus 183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~----~~~~~~~~L~~L~l~~-~~~l~~~~~~~l-------~~l~~L~ 250 (336)
T 2ast_B 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS----TLVRRCPNLVHLDLSD-SVMLKNDCFQEF-------FQLNYLQ 250 (336)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH----HHHHHCTTCSEEECTT-CTTCCGGGGGGG-------GGCTTCC
T ss_pred hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH----HHHhhCCCCCEEeCCC-CCcCCHHHHHHH-------hCCCCCC
Confidence 3 454566788 99999999975 343 222 2456788999999998 65343 333333 3568899
Q ss_pred EEEeccCCCcccc-ccccccCCCcceEeccCCCCCCCCCCCCC---CCCCcEEEEcCCc
Q 039944 259 SLWIEAFPNLERL-SSSIVDLQNLTELYLFGCPKLKYFPEKGL---PSSLLELRISRCP 313 (348)
Q Consensus 259 ~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~c~ 313 (348)
+|++++|..+... ...+.++++|+.|++++| ++..++ ..++..|+++++.
T Consensus 251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCC
T ss_pred EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEeccc
Confidence 9999998644321 125778999999999987 444333 3457777886543
No 80
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=7.3e-17 Score=155.47 Aligned_cols=287 Identities=15% Similarity=0.073 Sum_probs=146.2
Q ss_pred CCCCcccEEeecCccccccc---CC-CC------------CCCCccEEEeccCcccccccccccccccccccc-ccCCcc
Q 039944 3 DTNSSLEILDIEKCHSLTYI---AA-VQ------------LPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRR-YTSSLL 65 (348)
Q Consensus 3 ~~~~~L~~L~l~~~~~l~~l---~~-~~------------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~~~L 65 (348)
.++++|+.|++++|+.+..+ |. .+ .+++|++|++++|. +...... .+.. +. .+|
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~-------~l~~~~~-~~L 140 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLD-------RLAKARA-DDL 140 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHH-------HHHHHHG-GGC
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHH-------HHHHhcc-ccC
Confidence 35778888888877654322 11 11 26788888888875 4432211 1122 11 036
Q ss_pred ceeeeeCCCCcccc-ccCC-CCCCCcceeEec-----------------cCCCCccEEEEcCCCCc----ccchhhhcCC
Q 039944 66 EHLEIISCPSLTCI-FSKN-ELPATLESLEVG-----------------NLPLSLKSLFVYGCSKL----GSIAERLDNN 122 (348)
Q Consensus 66 ~~L~l~~~~~l~~~-~~~~-~~~~~L~~L~i~-----------------~l~~~L~~L~l~~~~~~----~~~~~~~~~l 122 (348)
++|++.+|..+... ++.. ..+++|++|.+. .++. |+.|+++++... ..++..+..+
T Consensus 141 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~-L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 141 ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS-LEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC-CCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred cEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC-ccEEEeeccCCCccCHHHHHHHHhhC
Confidence 66666665432210 0000 122445555441 1344 666666554422 1223334455
Q ss_pred CccceecccccccccccC---------------------------CCCCCCCCccEEEEecCCCcCcccccccCCCCcce
Q 039944 123 TSLETISIDSCGNLVSFP---------------------------EGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQY 175 (348)
Q Consensus 123 ~~L~~L~l~~~~~l~~~~---------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~ 175 (348)
++|+.|++++|. +..++ ..+..+++|+.|.+.++ ....+|..+..+++|++
T Consensus 220 ~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 220 RSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRK 297 (592)
T ss_dssp TTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCE
T ss_pred CCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcE
Confidence 666666665532 22222 23333445555555542 23344444556667777
Q ss_pred eEeccCCCCCc--ccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEeccc---------CCcccc--ccc
Q 039944 176 LRIGKGGALPS--LEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC---------DEDMVS--FPL 242 (348)
Q Consensus 176 L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~---------c~~l~~--~~~ 242 (348)
|++++|. +.. +...+..+++|+.|++.++..-.... .....+++|++|++++. |+.+.. +..
T Consensus 298 L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~----~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 298 LDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLE----VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp EEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH----HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred EecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHH----HHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 7777664 322 11224566777777776322111111 12345667777777720 223321 111
Q ss_pred chhccCCCCCCCCCccEEEeccCCCccc-ccccccc-CCCcceEeccC---CCCCCCCCCC-CC------CCCCcEEEEc
Q 039944 243 EDKRLGTALPLPASLTSLWIEAFPNLER-LSSSIVD-LQNLTELYLFG---CPKLKYFPEK-GL------PSSLLELRIS 310 (348)
Q Consensus 243 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~-i~~~~~~-~~~L~~L~l~~---c~~l~~l~~~-~~------~~~L~~L~l~ 310 (348)
.. ..+++|++|++. |+.++. .+..+.. +++|+.|++.+ |+.++..|.. ++ +++|++|+++
T Consensus 373 l~-------~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 373 LA-------QGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp HH-------HHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HH-------hhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 11 135788888884 355542 2224433 88999999973 5677765432 11 6899999998
Q ss_pred CCch
Q 039944 311 RCPL 314 (348)
Q Consensus 311 ~c~~ 314 (348)
+|..
T Consensus 445 ~~~~ 448 (592)
T 3ogk_B 445 LRQG 448 (592)
T ss_dssp CCGG
T ss_pred cCCC
Confidence 8763
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=3.8e-15 Score=131.88 Aligned_cols=204 Identities=14% Similarity=0.069 Sum_probs=130.2
Q ss_pred CCCccEEEEcCCCCcccchhhh--cCCCccceecccccccccccC----CCCCCCCCccEEEEecCCCcCcccccccCCC
Q 039944 98 PLSLKSLFVYGCSKLGSIAERL--DNNTSLETISIDSCGNLVSFP----EGGLPCAKLTRLTILDCKRLEALPKGMHNLT 171 (348)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~ 171 (348)
+. |++|++++|......+..+ ..+++|++|++++|......+ .....+++|++|++++|......+..+..++
T Consensus 91 ~~-L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SR-LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SC-CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred Cc-eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 44 8888888887555566555 778888888888754332222 1223467888888888654333335667888
Q ss_pred CcceeEeccCCCCCc--ccc--cCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCccccc-ccchhc
Q 039944 172 SLQYLRIGKGGALPS--LEE--EDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSF-PLEDKR 246 (348)
Q Consensus 172 ~L~~L~l~~~~~~~~--~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~-~~~~~~ 246 (348)
+|++|++++|..... ++. ..+.+++|++|++++|. ++..+....+.+..+++|++|++++ +.+... |...+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~--N~l~~~~p~~~~- 245 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSH--NSLRATVNPSAP- 245 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTT--SCCCCCCCSCCS-
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCC--CCCCccchhhHH-
Confidence 888888888743221 221 23567788888888853 4433211001235678888888887 455554 44331
Q ss_pred cCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCCCCCCcEEEEcCCc
Q 039944 247 LGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGLPSSLLELRISRCP 313 (348)
Q Consensus 247 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 313 (348)
....+++|++|++++ +.++.+|..+. ++|+.|++++| .++.+|.....++|+.|++++++
T Consensus 246 ---~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 246 ---RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ---SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred ---hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 112236888888887 46777777664 78888888884 66666654446788888888775
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=1.4e-16 Score=153.50 Aligned_cols=202 Identities=14% Similarity=0.064 Sum_probs=112.0
Q ss_pred ccEEEEcCCCCccc--chhhhcCCCccceecccccccccccCCCCCCCCCccEEEEec----------CCCcCcc--ccc
Q 039944 101 LKSLFVYGCSKLGS--IAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILD----------CKRLEAL--PKG 166 (348)
Q Consensus 101 L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~----------~~~l~~~--~~~ 166 (348)
|+.|++++|. +.. +...+..+++|++|+++.+.....++.....+++|++|++.+ |..+... +..
T Consensus 295 L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 295 IRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp CCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 7777777766 322 223356677777777764322222333233456788888774 5544431 112
Q ss_pred ccCCCCcceeEeccCCCCCc-ccccCC-CCCCcCeeeecC---Cccchhhhhc--cccccCCCCCccEEEecccCCc-cc
Q 039944 167 MHNLTSLQYLRIGKGGALPS-LEEEDG-LPTNLQSLDIWG---NMEIWKSMIE--RGRGFHRFSSLRRLTISRCDED-MV 238 (348)
Q Consensus 167 l~~l~~L~~L~l~~~~~~~~-~~~~~~-~~~~L~~L~l~~---~~~l~~~~~~--~~~~~~~l~~L~~L~l~~~c~~-l~ 238 (348)
...+++|++|+++.+ .+.. .+..++ .+++|+.|++.+ ++.++..+.. ....+.++++|+.|++++ |.+ +.
T Consensus 374 ~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~-~~~~l~ 451 (592)
T 3ogk_B 374 AQGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL-RQGGLT 451 (592)
T ss_dssp HHHCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC-CGGGCC
T ss_pred HhhCccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec-CCCCcc
Confidence 245677888877433 3332 111222 367788888863 3444432100 001245577888888876 543 21
Q ss_pred c-cccchhccCCCCCCCCCccEEEeccCCCcc--ccccccccCCCcceEeccCCCCCCC--CCCC-CCCCCCcEEEEcCC
Q 039944 239 S-FPLEDKRLGTALPLPASLTSLWIEAFPNLE--RLSSSIVDLQNLTELYLFGCPKLKY--FPEK-GLPSSLLELRISRC 312 (348)
Q Consensus 239 ~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~i~~~~~~~~~L~~L~l~~c~~l~~--l~~~-~~~~~L~~L~l~~c 312 (348)
. .....+ ..+++|++|++++|. ++ .++..+..+++|++|++++|+ ++. ++.. ...++|++|++++|
T Consensus 452 ~~~~~~~~------~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 452 DLGLSYIG------QYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp HHHHHHHH------HSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred HHHHHHHH------HhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence 1 111111 246778888888753 44 244456778889999998886 432 1110 11578889999888
Q ss_pred c
Q 039944 313 P 313 (348)
Q Consensus 313 ~ 313 (348)
.
T Consensus 524 ~ 524 (592)
T 3ogk_B 524 R 524 (592)
T ss_dssp B
T ss_pred c
Confidence 7
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=1.2e-14 Score=126.18 Aligned_cols=206 Identities=20% Similarity=0.162 Sum_probs=144.3
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEc
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVY 107 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~ 107 (348)
+++|+.|+++++. +..++. ++.++ +|++|+++++. +.. ++. + ..++. |+.|+++
T Consensus 40 l~~L~~L~l~~~~-i~~~~~---------l~~l~--~L~~L~l~~n~-l~~-~~~------l-----~~l~~-L~~L~L~ 93 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKSVQG---------IQYLP--NVRYLALGGNK-LHD-ISA------L-----KELTN-LTYLILT 93 (272)
T ss_dssp HTTCCEEECTTSC-CCCCTT---------GGGCT--TCCEEECTTSC-CCC-CGG------G-----TTCTT-CCEEECT
T ss_pred ccceeeeeeCCCC-cccccc---------cccCC--CCcEEECCCCC-CCC-chh------h-----cCCCC-CCEEECC
Confidence 7788999998886 666553 46666 89999998753 444 331 1 33466 8899998
Q ss_pred CCCCcccchhhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCccccc-ccCCCCcceeEeccCCCCC
Q 039944 108 GCSKLGSIAERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEALPKG-MHNLTSLQYLRIGKGGALP 185 (348)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~-l~~l~~L~~L~l~~~~~~~ 185 (348)
+|......+..+..+++|++|++++| .+..++. .+..+++|+.|++++| .+..+++. +..+++|++|++++| .+.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~ 170 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQ 170 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcC
Confidence 87643333455678899999999885 4555555 3567889999999886 45666543 578899999999987 455
Q ss_pred ccccc-CCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEecc
Q 039944 186 SLEEE-DGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEA 264 (348)
Q Consensus 186 ~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 264 (348)
.++.. ++.+++|+.|+++++. +...+. ..+..+++|+.|++++ + .+. +.++.|+.++++.
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~~~~l~~L~~L~l~~-N-~~~-------------~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQ-LKSVPD---GVFDRLTSLQYIWLHD-N-PWD-------------CTCPGIRYLSEWI 231 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CSCCCT---TTTTTCTTCCEEECCS-S-CBC-------------CCTTTTHHHHHHH
T ss_pred ccCHHHhcCCccCCEEECCCCc-CCccCH---HHHhCCcCCCEEEccC-C-Ccc-------------ccCcHHHHHHHHH
Confidence 55533 5778999999999854 555443 2467889999999998 4 221 2456788888887
Q ss_pred CCCccccccccccCCCc
Q 039944 265 FPNLERLSSSIVDLQNL 281 (348)
Q Consensus 265 ~~~l~~i~~~~~~~~~L 281 (348)
+.....+|.++..++..
T Consensus 232 n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 232 NKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp HHTGGGBBCTTSCBCGG
T ss_pred HhCCCcccCcccccCCC
Confidence 65556788777765543
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.3e-16 Score=142.77 Aligned_cols=201 Identities=13% Similarity=0.095 Sum_probs=148.0
Q ss_pred ccEEEEcCCCCcccchhhhcCCCccceecccccccccc-cCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEec
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVS-FPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIG 179 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~ 179 (348)
++.|++.++. +...+..+..+++|++|++++|..... ++..+..+++|++|++++|..-...+..+..+++|++|+++
T Consensus 72 l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 72 VIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp CSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred ceEEEcCCcc-ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 8899998775 444444466799999999999753222 56666778899999999986444566677889999999999
Q ss_pred cCCCCCc--ccccCCCCCCcCeeeecCCccchhhhhccccccCCCC-CccEEEecccCC-cc--cccccchhccCCCCCC
Q 039944 180 KGGALPS--LEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFS-SLRRLTISRCDE-DM--VSFPLEDKRLGTALPL 253 (348)
Q Consensus 180 ~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~-~L~~L~l~~~c~-~l--~~~~~~~~~~~~~~~~ 253 (348)
+|..+.. ++..+..+++|+.|++++|..+...... ..+..++ +|++|++++ |. .+ ..++... ..
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~~L~~L~l~~-~~~~~~~~~l~~~~-------~~ 220 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETITQLNLSG-YRKNLQKSDLSTLV-------RR 220 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEECCS-CGGGSCHHHHHHHH-------HH
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--HHHHhcccCCCEEEeCC-CcccCCHHHHHHHH-------hh
Confidence 9865653 5645677899999999998566542111 2457788 999999998 53 33 3344433 35
Q ss_pred CCCccEEEeccCCCcc-ccccccccCCCcceEeccCCCCCCCCC--CCCCCCCCcEEEEcCC
Q 039944 254 PASLTSLWIEAFPNLE-RLSSSIVDLQNLTELYLFGCPKLKYFP--EKGLPSSLLELRISRC 312 (348)
Q Consensus 254 ~~~L~~L~l~~~~~l~-~i~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~L~~L~l~~c 312 (348)
+++|++|++++|..++ ..+..+.++++|+.|++++|..+..-. ...-.++|++|++++|
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 7899999999986554 556678899999999999987443321 1112789999999998
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=1.4e-17 Score=155.59 Aligned_cols=215 Identities=19% Similarity=0.231 Sum_probs=102.7
Q ss_pred CCCcccEEeecCccccc-----ccCCC-CCCCCccEEEeccCcccccccccccccccccccccc--CCccceeeeeCCCC
Q 039944 4 TNSSLEILDIEKCHSLT-----YIAAV-QLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYT--SSLLEHLEIISCPS 75 (348)
Q Consensus 4 ~~~~L~~L~l~~~~~l~-----~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~ 75 (348)
.+++|++|++++|. ++ .++.. ..+++|++|++++|. +....... +.+.+. .++|++|++++|.
T Consensus 26 ~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~------l~~~l~~~~~~L~~L~L~~n~- 96 (461)
T 1z7x_W 26 LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHC------VLQGLQTPSCKIQKLSLQNCC- 96 (461)
T ss_dssp HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH------HHHTTCSTTCCCCEEECTTSC-
T ss_pred hcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHH------HHHHHhhCCCceeEEEccCCC-
Confidence 45677777777653 33 22221 125667777777765 43321110 111111 0136667666653
Q ss_pred ccc----cccC-CCCCCCcceeEec------------------cCCCCccEEEEcCCCCccc----chhhhcCCCcccee
Q 039944 76 LTC----IFSK-NELPATLESLEVG------------------NLPLSLKSLFVYGCSKLGS----IAERLDNNTSLETI 128 (348)
Q Consensus 76 l~~----~~~~-~~~~~~L~~L~i~------------------~l~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L 128 (348)
+.+ .++. ....++|++|.+. ..++ |++|++++|..... ++..+..+++|++|
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR-LEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC-CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEE
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc-ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEE
Confidence 321 0111 1223455555551 0123 77777777653332 24445556777777
Q ss_pred ccccccccccc-CCCCC-----CCCCccEEEEecCCCcCc-----ccccccCCCCcceeEeccCCCCCcc------cccC
Q 039944 129 SIDSCGNLVSF-PEGGL-----PCAKLTRLTILDCKRLEA-----LPKGMHNLTSLQYLRIGKGGALPSL------EEED 191 (348)
Q Consensus 129 ~l~~~~~l~~~-~~~~~-----~~~~L~~L~l~~~~~l~~-----~~~~l~~l~~L~~L~l~~~~~~~~~------~~~~ 191 (348)
++++|. +... +..+. ..++|++|++++|. +.. ++..+..+++|++|++++| .+... +...
T Consensus 176 ~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 176 TVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLL 252 (461)
T ss_dssp ECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHT
T ss_pred ECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHh
Confidence 777654 2221 11110 13467777777653 332 3444556667777777665 23221 1112
Q ss_pred CCCCCcCeeeecCCccchhhhhc-cccccCCCCCccEEEecc
Q 039944 192 GLPTNLQSLDIWGNMEIWKSMIE-RGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 192 ~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~l~~L~~L~l~~ 232 (348)
..+++|+.|++++| .+...... ....+..+++|++|++++
T Consensus 253 ~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 253 HPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp STTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred cCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 24566777777665 33331100 001234456666666666
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=3.2e-15 Score=129.85 Aligned_cols=220 Identities=19% Similarity=0.226 Sum_probs=152.8
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEc
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVY 107 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~ 107 (348)
+..+..+.+.++. +..... ...+. +|+.|++.++. +.. ++. + ..++. |+.|+++
T Consensus 18 ~~~l~~l~l~~~~-~~~~~~---------~~~l~--~L~~L~l~~~~-i~~-~~~------l-----~~l~~-L~~L~l~ 71 (272)
T 3rfs_A 18 FAETIKANLKKKS-VTDAVT---------QNELN--SIDQIIANNSD-IKS-VQG------I-----QYLPN-VRYLALG 71 (272)
T ss_dssp HHHHHHHHHTCSC-TTSEEC---------HHHHT--TCCEEECTTSC-CCC-CTT------G-----GGCTT-CCEEECT
T ss_pred HHHHHHHHhcCcc-cccccc---------ccccc--ceeeeeeCCCC-ccc-ccc------c-----ccCCC-CcEEECC
Confidence 3345555555554 343332 35566 89999998864 443 332 1 33466 9999999
Q ss_pred CCCCcccchhhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCcccc-cccCCCCcceeEeccCCCCC
Q 039944 108 GCSKLGSIAERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEALPK-GMHNLTSLQYLRIGKGGALP 185 (348)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~ 185 (348)
+|. +..++ .+..+++|++|++++| .+..++. .+..+++|++|++++|. +..+++ .+..+++|++|++++| .+.
T Consensus 72 ~n~-l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~ 146 (272)
T 3rfs_A 72 GNK-LHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQ 146 (272)
T ss_dssp TSC-CCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred CCC-CCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccC
Confidence 876 55554 6788999999999985 5556555 45678899999999965 555654 4688999999999987 566
Q ss_pred ccccc-CCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEecc
Q 039944 186 SLEEE-DGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEA 264 (348)
Q Consensus 186 ~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 264 (348)
.++.. ++.+++|+.|+++++ .+...+. ..+..+++|+.|++++ +.+..++... +..+++|+.|++++
T Consensus 147 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~---~~~~~l~~L~~L~L~~--N~l~~~~~~~------~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 147 SLPKGVFDKLTNLTELDLSYN-QLQSLPE---GVFDKLTQLKDLRLYQ--NQLKSVPDGV------FDRLTSLQYIWLHD 214 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECCS--SCCSCCCTTT------TTTCTTCCEEECCS
T ss_pred ccCHHHhccCccCCEEECCCC-CcCccCH---HHhcCCccCCEEECCC--CcCCccCHHH------HhCCcCCCEEEccC
Confidence 66533 578899999999996 4555543 2467889999999998 5666666532 24678999999998
Q ss_pred CCCccccccccccCCCcceEeccCCCCCCCCCC
Q 039944 265 FPNLERLSSSIVDLQNLTELYLFGCPKLKYFPE 297 (348)
Q Consensus 265 ~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 297 (348)
++.. ..+++|+.++++.+.-...+|.
T Consensus 215 N~~~-------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 215 NPWD-------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp SCBC-------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred CCcc-------ccCcHHHHHHHHHHhCCCcccC
Confidence 6422 3567888888877543334444
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=1.3e-13 Score=118.19 Aligned_cols=170 Identities=20% Similarity=0.266 Sum_probs=72.8
Q ss_pred cceecccccccccccCCCCCCCCCccEEEEecCCCcCccc-ccccCCCCcceeEeccCCCCCccc-ccCCCCCCcCeeee
Q 039944 125 LETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALP-KGMHNLTSLQYLRIGKGGALPSLE-EEDGLPTNLQSLDI 202 (348)
Q Consensus 125 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l 202 (348)
.+++++++ ..+..+|..+. ++++.|++++|. +..++ ..+..+++|++|++++| .+..++ ..+..+++|+.|++
T Consensus 16 ~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GTEEECTT-CCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CeEEecCC-CCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 33444443 33444444332 244555554432 22222 23444455555555544 222222 12344455555555
Q ss_pred cCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccccc-ccccCCCc
Q 039944 203 WGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNL 281 (348)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L 281 (348)
+++ .+...+.. .+..+++|+.|++++ +.+..++... +..+++|++|++++ +.++.++. .+..+++|
T Consensus 91 ~~n-~l~~~~~~---~~~~l~~L~~L~L~~--N~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 91 ANN-QLASLPLG---VFDHLTQLDKLYLGG--NQLKSLPSGV------FDRLTKLKELRLNT-NQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTS-CCCCCCTT---TTTTCTTCCEEECCS--SCCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred CCC-cccccChh---HhcccCCCCEEEcCC--CcCCCcChhH------hccCCcccEEECcC-CcCCccCHHHcCcCcCC
Confidence 542 22322221 234455555555554 3444443321 12344555555555 24444443 34455555
Q ss_pred ceEeccCCCCCCCCCCCCC--CCCCcEEEEcCCc
Q 039944 282 TELYLFGCPKLKYFPEKGL--PSSLLELRISRCP 313 (348)
Q Consensus 282 ~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 313 (348)
+.|+++++ .++.++...+ .++|+.|++++++
T Consensus 158 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 158 QTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 55555552 4444443222 3455555555543
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=127.07 Aligned_cols=201 Identities=20% Similarity=0.126 Sum_probs=139.7
Q ss_pred ccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcCCCCcccch----hhhcCCCccceeccccccccccc
Q 039944 64 LLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYGCSKLGSIA----ERLDNNTSLETISIDSCGNLVSF 139 (348)
Q Consensus 64 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~ 139 (348)
+|++|+++++. +....+.. +.. ..+++ |+.|++++|......+ ..+..+++|++|++++|......
T Consensus 92 ~L~~L~l~~n~-l~~~~~~~-~~~-------~~~~~-L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 161 (310)
T 4glp_A 92 RLKELTLEDLK-ITGTMPPL-PLE-------ATGLA-LSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS 161 (310)
T ss_dssp CCCEEEEESCC-CBSCCCCC-SSS-------CCCBC-CSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC
T ss_pred ceeEEEeeCCE-eccchhhh-hhh-------ccCCC-CCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhh
Confidence 79999999864 44313321 100 12255 9999999887544322 34457999999999986543333
Q ss_pred CCCCCCCCCccEEEEecCCCcCc--ccc--cccCCCCcceeEeccCCCCCccccc----CCCCCCcCeeeecCCccchhh
Q 039944 140 PEGGLPCAKLTRLTILDCKRLEA--LPK--GMHNLTSLQYLRIGKGGALPSLEEE----DGLPTNLQSLDIWGNMEIWKS 211 (348)
Q Consensus 140 ~~~~~~~~~L~~L~l~~~~~l~~--~~~--~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~l~~~ 211 (348)
+..+..+++|++|++++|..... ++. .+..+++|++|++++| .++.++.. ++.+++|++|+++++. +...
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~ 239 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRAT 239 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCC
T ss_pred HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCcc
Confidence 45677889999999999764321 322 3367899999999987 56655532 3567999999999964 4443
Q ss_pred -hhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCC
Q 039944 212 -MIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCP 290 (348)
Q Consensus 212 -~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 290 (348)
+... ..+..+++|++|++++ +.++.+|... +++|+.|++++ +.++.+|. +..+++|+.|++++++
T Consensus 240 ~p~~~-~~~~~~~~L~~L~Ls~--N~l~~lp~~~---------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 240 VNPSA-PRCMWSSALNSLNLSF--AGLEQVPKGL---------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCC-SSCCCCTTCCCEECCS--SCCCSCCSCC---------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred chhhH-HhccCcCcCCEEECCC--CCCCchhhhh---------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCC
Confidence 3210 1122347999999998 6788887743 47999999998 57887764 7888999999999964
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=4e-16 Score=150.30 Aligned_cols=14 Identities=43% Similarity=0.752 Sum_probs=10.2
Q ss_pred CCCCcEEEEcCCch
Q 039944 301 PSSLLELRISRCPL 314 (348)
Q Consensus 301 ~~~L~~L~l~~c~~ 314 (348)
+++|++|++++|+.
T Consensus 480 ~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 480 CDSLRKLEIRDCPF 493 (594)
T ss_dssp CTTCCEEEEESCSC
T ss_pred CCCcCEEECcCCCC
Confidence 46777777777764
No 90
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.54 E-value=3.4e-17 Score=152.94 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=63.3
Q ss_pred CCcccEEeecCcccccccCCC---CCCCCccEEEeccCccccc-----cccccccccccccccccCCccceeeeeCCCCc
Q 039944 5 NSSLEILDIEKCHSLTYIAAV---QLPSSLKKLQICDCYNIRT-----LTVEEGIQCSSSSRRYTSSLLEHLEIISCPSL 76 (348)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 76 (348)
.++|++|+++++ .++..+.. ..+++|++|++++|. +.. ++.. ++.++ +|++|+++++. +
T Consensus 2 ~~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~--------l~~~~--~L~~L~Ls~n~-l 68 (461)
T 1z7x_W 2 SLDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSA--------LRVNP--ALAELNLRSNE-L 68 (461)
T ss_dssp CEEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHH--------HHTCT--TCCEEECTTCC-C
T ss_pred Cccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHH--------HHhCC--CcCEEeCCCCc-C
Confidence 358999999864 55544322 227899999999998 653 2332 55666 99999999864 4
Q ss_pred cccccCCCCCCCcceeEeccCCCCccEEEEcCCCCcc----cchhhhcCCCccceecccccc
Q 039944 77 TCIFSKNELPATLESLEVGNLPLSLKSLFVYGCSKLG----SIAERLDNNTSLETISIDSCG 134 (348)
Q Consensus 77 ~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~ 134 (348)
.+ .....+...+.. ...+|++|++++|.... .++..+..+++|++|++++|.
T Consensus 69 ~~-~~~~~l~~~l~~-----~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 69 GD-VGVHCVLQGLQT-----PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HH-HHHHHHHHTTCS-----TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred Ch-HHHHHHHHHHhh-----CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 33 111101000000 01026666666665321 234555666666666666543
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=5.5e-16 Score=149.37 Aligned_cols=287 Identities=14% Similarity=0.090 Sum_probs=144.7
Q ss_pred CCCcccEEeecCcccccccCC---C-------------CCCCCccEEEeccCccccccccccccccccccccccCCccce
Q 039944 4 TNSSLEILDIEKCHSLTYIAA---V-------------QLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEH 67 (348)
Q Consensus 4 ~~~~L~~L~l~~~~~l~~l~~---~-------------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 67 (348)
++++|+.|++.+|+.+.++.. . ..+++|++|++++|. +....... +.+.++ +|++
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~------l~~~~~--~L~~ 134 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLEL------IAKSFK--NFKV 134 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHH------HHHHCT--TCCE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHH------HHHhCC--CCcE
Confidence 568888888888765543321 0 126788888888876 44322110 112344 7778
Q ss_pred eeeeCCCCcccc-ccCC-CCCCCcceeEec-----------------cCCCCccEEEEcCCC-Ccc--cchhhhcCCCcc
Q 039944 68 LEIISCPSLTCI-FSKN-ELPATLESLEVG-----------------NLPLSLKSLFVYGCS-KLG--SIAERLDNNTSL 125 (348)
Q Consensus 68 L~l~~~~~l~~~-~~~~-~~~~~L~~L~i~-----------------~l~~~L~~L~l~~~~-~~~--~~~~~~~~l~~L 125 (348)
|++.+|..+.+. ++.. ...++|++|.+. .+++ |+.|++++|. .+. .+...+..+++|
T Consensus 135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~l~~l~~~~~~L 213 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS-LVSLNISCLASEVSFSALERLVTRCPNL 213 (594)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC-CCEEECTTCCSCCCHHHHHHHHHHCTTC
T ss_pred EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc-CcEEEecccCCcCCHHHHHHHHHhCCCC
Confidence 877777543320 1110 122444444441 2233 6666666554 111 112222345666
Q ss_pred ceecccccccccccCCCCCCCCCccEEEEecCC-------------------Cc-----------CcccccccCCCCcce
Q 039944 126 ETISIDSCGNLVSFPEGGLPCAKLTRLTILDCK-------------------RL-----------EALPKGMHNLTSLQY 175 (348)
Q Consensus 126 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~-------------------~l-----------~~~~~~l~~l~~L~~ 175 (348)
++|++++|..+..++..+..+++|+.|.+.++. .+ ..++..+..+++|++
T Consensus 214 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~ 293 (594)
T 2p1m_B 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293 (594)
T ss_dssp CEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCE
T ss_pred cEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCE
Confidence 666666654444444333344455555533221 11 112222234567777
Q ss_pred eEeccCCCCCc--ccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecc-------cCCcccccccchhc
Q 039944 176 LRIGKGGALPS--LEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISR-------CDEDMVSFPLEDKR 246 (348)
Q Consensus 176 L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~-------~c~~l~~~~~~~~~ 246 (348)
|++++|. +.. +......+++|+.|++.++....... .....+++|++|++.+ .|..+.......
T Consensus 294 L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~----~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~-- 366 (594)
T 2p1m_B 294 LNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE----VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS-- 366 (594)
T ss_dssp EECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH----HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH--
T ss_pred EEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHH----HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH--
Confidence 7777664 332 22224466777777777652111111 1223467777777733 022322111000
Q ss_pred cCCCCCCCCCccEEEeccCCCcccc-cccc-ccCCCcceEecc-----CCCCCCCCCCC-C------CCCCCcEEEEcC
Q 039944 247 LGTALPLPASLTSLWIEAFPNLERL-SSSI-VDLQNLTELYLF-----GCPKLKYFPEK-G------LPSSLLELRISR 311 (348)
Q Consensus 247 ~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~-~~~~~L~~L~l~-----~c~~l~~l~~~-~------~~~~L~~L~l~~ 311 (348)
+ ...+++|+.|.+.. +.++.. ...+ ..+++|+.|++. +|+.++..|.. + -+++|++|++++
T Consensus 367 l---~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 367 V---SMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp H---HHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred H---HHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 0 01256788886543 555432 1223 358899999998 67777765541 1 157899999977
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=4.4e-13 Score=114.84 Aligned_cols=172 Identities=19% Similarity=0.196 Sum_probs=105.4
Q ss_pred ccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCC-C
Q 039944 64 LLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPE-G 142 (348)
Q Consensus 64 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~ 142 (348)
+.+++++++. .+.. +|.. + |.+++.|+++++......+..+..+++|++|++++| .+..++. .
T Consensus 15 ~~~~l~~~~~-~l~~-~p~~-~------------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 78 (251)
T 3m19_A 15 GKKEVDCQGK-SLDS-VPSG-I------------PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGV 78 (251)
T ss_dssp GGTEEECTTC-CCSS-CCSC-C------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred CCeEEecCCC-Cccc-cCCC-C------------CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhH
Confidence 6777777763 4555 5542 2 334888888877644444556777888888888874 4444443 4
Q ss_pred CCCCCCccEEEEecCCCcCccc-ccccCCCCcceeEeccCCCCCccccc-CCCCCCcCeeeecCCccchhhhhccccccC
Q 039944 143 GLPCAKLTRLTILDCKRLEALP-KGMHNLTSLQYLRIGKGGALPSLEEE-DGLPTNLQSLDIWGNMEIWKSMIERGRGFH 220 (348)
Q Consensus 143 ~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 220 (348)
+..+++|+.|++++|. +..++ ..+..+++|++|++++| .+..++.. +..+++|+.|+++++ .+..++.. .+.
T Consensus 79 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~---~~~ 152 (251)
T 3m19_A 79 FDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAG---AFD 152 (251)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTT
T ss_pred hccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHH---HcC
Confidence 5667788888887754 44554 34567777777777776 45555532 455677777777764 44444421 355
Q ss_pred CCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccC
Q 039944 221 RFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAF 265 (348)
Q Consensus 221 ~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 265 (348)
.+++|+.|++++ +.+..++... +..+++|+.|+++++
T Consensus 153 ~l~~L~~L~L~~--N~l~~~~~~~------~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 153 KLTNLQTLSLST--NQLQSVPHGA------FDRLGKLQTITLFGN 189 (251)
T ss_dssp TCTTCCEEECCS--SCCSCCCTTT------TTTCTTCCEEECCSC
T ss_pred cCcCCCEEECCC--CcCCccCHHH------HhCCCCCCEEEeeCC
Confidence 666777777776 4555554421 134566667777664
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=1.2e-13 Score=121.05 Aligned_cols=172 Identities=16% Similarity=0.226 Sum_probs=134.3
Q ss_pred CCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCccee
Q 039944 97 LPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYL 176 (348)
Q Consensus 97 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L 176 (348)
++. |+.|++++|. +..++ .+..+++|++|++++| .+..++. +..+++|+.|++++|. +..++ .+..+++|++|
T Consensus 45 l~~-L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNS-IDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSL 117 (291)
T ss_dssp HHT-CCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEE
T ss_pred cCc-ccEEEccCCC-cccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEE
Confidence 466 9999999875 55554 4788999999999985 5656655 6778899999999964 66664 58889999999
Q ss_pred EeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCC
Q 039944 177 RIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPAS 256 (348)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~ 256 (348)
++++| .+..++ .+..+++|+.|+++++ .+.... .+..+++|+.|++++ +.+..++. . ..+++
T Consensus 118 ~L~~n-~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~L~~--N~l~~~~~-l-------~~l~~ 179 (291)
T 1h6t_A 118 SLEHN-GISDIN-GLVHLPQLESLYLGNN-KITDIT-----VLSRLTKLDTLSLED--NQISDIVP-L-------AGLTK 179 (291)
T ss_dssp ECTTS-CCCCCG-GGGGCTTCCEEECCSS-CCCCCG-----GGGGCTTCSEEECCS--SCCCCCGG-G-------TTCTT
T ss_pred ECCCC-cCCCCh-hhcCCCCCCEEEccCC-cCCcch-----hhccCCCCCEEEccC--Cccccchh-h-------cCCCc
Confidence 99987 566666 6788899999999985 455543 467889999999998 46666655 3 47789
Q ss_pred ccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCC
Q 039944 257 LTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFP 296 (348)
Q Consensus 257 L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~ 296 (348)
|+.|++++ +.++.++ .+..+++|+.|++++++ +...|
T Consensus 180 L~~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~n~-i~~~~ 216 (291)
T 1h6t_A 180 LQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQE-CLNKP 216 (291)
T ss_dssp CCEEECCS-SCCCBCG-GGTTCTTCSEEEEEEEE-EECCC
T ss_pred cCEEECCC-CcCCCCh-hhccCCCCCEEECcCCc-ccCCc
Confidence 99999998 4788777 48889999999999853 44433
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=1.5e-13 Score=120.38 Aligned_cols=174 Identities=17% Similarity=0.216 Sum_probs=132.8
Q ss_pred ccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceeccccccccc
Q 039944 58 RRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLV 137 (348)
Q Consensus 58 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 137 (348)
..+. +|+.|+++++. +.. ++. + ..++. |+.|++++|. +..++. +..+++|++|++++| .+.
T Consensus 43 ~~l~--~L~~L~l~~~~-i~~-~~~------~-----~~l~~-L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~ 103 (291)
T 1h6t_A 43 NELN--SIDQIIANNSD-IKS-VQG------I-----QYLPN-VTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN-KVK 103 (291)
T ss_dssp HHHH--TCCEEECTTSC-CCC-CTT------G-----GGCTT-CCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCC
T ss_pred hhcC--cccEEEccCCC-ccc-Chh------H-----hcCCC-CCEEEccCCc-cCCCcc-cccCCCCCEEECCCC-cCC
Confidence 5666 99999998863 554 432 2 33466 9999999886 555555 889999999999985 566
Q ss_pred ccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhcccc
Q 039944 138 SFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGR 217 (348)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 217 (348)
.++. +..+++|+.|++++| .+..+ +.+..+++|++|++++| .+..++ .+..+++|+.|++++| .+...+
T Consensus 104 ~~~~-l~~l~~L~~L~L~~n-~i~~~-~~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~N-~l~~~~----- 172 (291)
T 1h6t_A 104 DLSS-LKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNN-KITDIT-VLSRLTKLDTLSLEDN-QISDIV----- 172 (291)
T ss_dssp CGGG-GTTCTTCCEEECTTS-CCCCC-GGGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCCCG-----
T ss_pred CChh-hccCCCCCEEECCCC-cCCCC-hhhcCCCCCCEEEccCC-cCCcch-hhccCCCCCEEEccCC-ccccch-----
Confidence 6554 677889999999996 46666 46788999999999987 566665 7888999999999996 455554
Q ss_pred ccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccc
Q 039944 218 GFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLS 272 (348)
Q Consensus 218 ~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 272 (348)
.+..+++|+.|++++ +.+..++. . ..+++|+.|+++++ .+...|
T Consensus 173 ~l~~l~~L~~L~L~~--N~i~~l~~-l-------~~l~~L~~L~l~~n-~i~~~~ 216 (291)
T 1h6t_A 173 PLAGLTKLQNLYLSK--NHISDLRA-L-------AGLKNLDVLELFSQ-ECLNKP 216 (291)
T ss_dssp GGTTCTTCCEEECCS--SCCCBCGG-G-------TTCTTCSEEEEEEE-EEECCC
T ss_pred hhcCCCccCEEECCC--CcCCCChh-h-------ccCCCCCEEECcCC-cccCCc
Confidence 267889999999998 57777764 3 47889999999985 454444
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=3.9e-15 Score=135.87 Aligned_cols=238 Identities=16% Similarity=0.081 Sum_probs=152.8
Q ss_pred CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCC--CccccccCCCCCCCcceeE--eccCCCCccE
Q 039944 28 PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCP--SLTCIFSKNELPATLESLE--VGNLPLSLKS 103 (348)
Q Consensus 28 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~~~~L~~L~--i~~l~~~L~~ 103 (348)
+++|++|++++|. +....... -...+..++ +|++|++++|. .+...+|. .++.+. +..++. |+.
T Consensus 31 ~~~L~~L~L~~n~-i~~~~~~~---l~~~l~~~~--~L~~L~Ls~~~~~~l~~~~~~-----~~~~l~~~l~~~~~-L~~ 98 (386)
T 2ca6_A 31 DDSVKEIVLSGNT-IGTEAARW---LSENIASKK--DLEIAEFSDIFTGRVKDEIPE-----ALRLLLQALLKCPK-LHT 98 (386)
T ss_dssp CSCCCEEECTTSE-ECHHHHHH---HHHTTTTCT--TCCEEECCSCCTTSCGGGSHH-----HHHHHHHHHTTCTT-CCE
T ss_pred CCCccEEECCCCC-CCHHHHHH---HHHHHHhCC--CccEEeCcccccCccccchhH-----HHHHHHHHHhhCCc-ccE
Confidence 6889999999986 55432110 000245566 89999998863 22211121 111000 023366 999
Q ss_pred EEEcCCCCcc----cchhhhcCCCccceeccccccccc----ccCCCCCCC---------CCccEEEEecCCCc-Cccc-
Q 039944 104 LFVYGCSKLG----SIAERLDNNTSLETISIDSCGNLV----SFPEGGLPC---------AKLTRLTILDCKRL-EALP- 164 (348)
Q Consensus 104 L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~----~~~~~~~~~---------~~L~~L~l~~~~~l-~~~~- 164 (348)
|++++|.... .++..+..+++|++|++++|.... .++..+..+ ++|++|++++|..- ..++
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 9999887444 256778889999999999864321 122222222 68999999987532 2333
Q ss_pred --ccccCCCCcceeEeccCCCCCc------ccccCCCCCCcCeeeecCCccc----hhhhhccccccCCCCCccEEEecc
Q 039944 165 --KGMHNLTSLQYLRIGKGGALPS------LEEEDGLPTNLQSLDIWGNMEI----WKSMIERGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 165 --~~l~~l~~L~~L~l~~~~~~~~------~~~~~~~~~~L~~L~l~~~~~l----~~~~~~~~~~~~~l~~L~~L~l~~ 232 (348)
..+..+++|++|++++| .+.. .+..+..+++|+.|++++|.-- ..++ ..+..+++|+.|++++
T Consensus 179 l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~----~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA----IALKSWPNLRELGLND 253 (386)
T ss_dssp HHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH----HHGGGCTTCCEEECTT
T ss_pred HHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH----HHHccCCCcCEEECCC
Confidence 35567889999999987 4441 2225677899999999996531 3333 2467889999999998
Q ss_pred cCCccccc-----ccchhccCCCCCCCCCccEEEeccCCCccc-----ccccc-ccCCCcceEeccCCC
Q 039944 233 CDEDMVSF-----PLEDKRLGTALPLPASLTSLWIEAFPNLER-----LSSSI-VDLQNLTELYLFGCP 290 (348)
Q Consensus 233 ~c~~l~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----i~~~~-~~~~~L~~L~l~~c~ 290 (348)
| .+... +.... ...+++|++|++++| .++. +|..+ .++++|+.|++++|+
T Consensus 254 -n-~i~~~~~~~l~~~l~-----~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 254 -C-LLSARGAAAVVDAFS-----KLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp -C-CCCHHHHHHHHHHHH-----TCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred -C-CCchhhHHHHHHHHh-----hccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4 44432 33220 013678999999985 5655 77766 668999999999964
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=7.4e-13 Score=109.10 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=65.0
Q ss_pred CccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccE
Q 039944 148 KLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRR 227 (348)
Q Consensus 148 ~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 227 (348)
+|+.|++++| .+..+| .+..+++|++|++++| .+..++ .+..+++|+.|+++++. +..... ..+..+++|+.
T Consensus 45 ~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~---~~l~~l~~L~~ 116 (197)
T 4ezg_A 45 SLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKD-VTSDKI---PNLSGLTSLTL 116 (197)
T ss_dssp TCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTT-CBGGGS---CCCTTCTTCCE
T ss_pred CccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCc-cCcccC---hhhcCCCCCCE
Confidence 4444444442 233333 3444444555555444 333333 34444555555555432 222111 13444555555
Q ss_pred EEecccCCcccc-cccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCCCCCCcE
Q 039944 228 LTISRCDEDMVS-FPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGLPSSLLE 306 (348)
Q Consensus 228 L~l~~~c~~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 306 (348)
|++++ +.+.. .+... ..+++|++|++++|..++.++ .+..+++|+.|++++| .+++++...-.++|++
T Consensus 117 L~Ls~--n~i~~~~~~~l-------~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~ 185 (197)
T 4ezg_A 117 LDISH--SAHDDSILTKI-------NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRGIEDFPKLNQ 185 (197)
T ss_dssp EECCS--SBCBGGGHHHH-------TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTTGGGCSSCCE
T ss_pred EEecC--CccCcHhHHHH-------hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHHhccCCCCCE
Confidence 55554 22322 22222 244555555555543344444 4555555555555553 3444432122455566
Q ss_pred EEEcCCc
Q 039944 307 LRISRCP 313 (348)
Q Consensus 307 L~l~~c~ 313 (348)
|++++++
T Consensus 186 L~l~~N~ 192 (197)
T 4ezg_A 186 LYAFSQT 192 (197)
T ss_dssp EEECBC-
T ss_pred EEeeCcc
Confidence 6655543
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=4.8e-13 Score=110.25 Aligned_cols=149 Identities=19% Similarity=0.171 Sum_probs=84.4
Q ss_pred CCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeee
Q 039944 122 NTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLD 201 (348)
Q Consensus 122 l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 201 (348)
+++|+.|++++ +.+..++ .+..+++|++|++++| .+..+ +.+..+++|++|++++|.-....+..++.+++|+.|+
T Consensus 43 l~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLAN-INVTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEES-SCCSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccC-CCccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 44555555554 2333444 3444555666666655 33333 2455566666666666532222333556666777777
Q ss_pred ecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCccccccccccCCCc
Q 039944 202 IWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSSSIVDLQNL 281 (348)
Q Consensus 202 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L 281 (348)
++++.-....+ ..+..+++|+.|++++ |..+..++. . ..+++|++|++++| .++.++ .+..+++|
T Consensus 119 Ls~n~i~~~~~----~~l~~l~~L~~L~L~~-n~~i~~~~~-l-------~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L 183 (197)
T 4ezg_A 119 ISHSAHDDSIL----TKINTLPKVNSIDLSY-NGAITDIMP-L-------KTLPELKSLNIQFD-GVHDYR-GIEDFPKL 183 (197)
T ss_dssp CCSSBCBGGGH----HHHTTCSSCCEEECCS-CTBCCCCGG-G-------GGCSSCCEEECTTB-CCCCCT-TGGGCSSC
T ss_pred ecCCccCcHhH----HHHhhCCCCCEEEccC-CCCccccHh-h-------cCCCCCCEEECCCC-CCcChH-HhccCCCC
Confidence 76643222222 1356677777777777 433555553 2 25667777777774 566665 66777788
Q ss_pred ceEeccCC
Q 039944 282 TELYLFGC 289 (348)
Q Consensus 282 ~~L~l~~c 289 (348)
+.|+++++
T Consensus 184 ~~L~l~~N 191 (197)
T 4ezg_A 184 NQLYAFSQ 191 (197)
T ss_dssp CEEEECBC
T ss_pred CEEEeeCc
Confidence 88888774
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=4.9e-13 Score=128.45 Aligned_cols=173 Identities=16% Similarity=0.216 Sum_probs=134.3
Q ss_pred CCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCccee
Q 039944 97 LPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYL 176 (348)
Q Consensus 97 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L 176 (348)
++. |+.|++++|. +..++ .+..+++|+.|+++.| .+..++. +..+++|+.|++++| .+..++ .+..+++|++|
T Consensus 42 L~~-L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNS-IDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HTT-CCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred CCC-CCEEECcCCC-CCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 366 8888998776 55555 4788999999999985 4555555 667889999999996 466664 68889999999
Q ss_pred EeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCC
Q 039944 177 RIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPAS 256 (348)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~ 256 (348)
++++| .+..++ .+..+++|+.|++++| .+..+. .+..+++|+.|++++ +.+..++. . ..+++
T Consensus 115 ~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~-----~l~~l~~L~~L~Ls~--N~l~~~~~-l-------~~l~~ 176 (605)
T 1m9s_A 115 SLEHN-GISDIN-GLVHLPQLESLYLGNN-KITDIT-----VLSRLTKLDTLSLED--NQISDIVP-L-------AGLTK 176 (605)
T ss_dssp ECTTS-CCCCCG-GGGGCTTCSEEECCSS-CCCCCG-----GGGSCTTCSEEECCS--SCCCCCGG-G-------TTCTT
T ss_pred EecCC-CCCCCc-cccCCCccCEEECCCC-ccCCch-----hhcccCCCCEEECcC--CcCCCchh-h-------ccCCC
Confidence 99987 566666 6888999999999996 455543 467899999999998 46666555 3 47789
Q ss_pred ccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCC
Q 039944 257 LTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPE 297 (348)
Q Consensus 257 L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 297 (348)
|+.|++++| .+..++ .+..+++|+.|++++|+ +...|.
T Consensus 177 L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~-l~~~p~ 214 (605)
T 1m9s_A 177 LQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE-CLNKPI 214 (605)
T ss_dssp CCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEE-EECCCC
T ss_pred CCEEECcCC-CCCCCh-HHccCCCCCEEEccCCc-CcCCcc
Confidence 999999985 677775 68889999999999864 444443
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=4.2e-12 Score=120.83 Aligned_cols=152 Identities=22% Similarity=0.270 Sum_probs=66.8
Q ss_pred ccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEecc
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGK 180 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~ 180 (348)
|+.|++++|. +..+| ..+++|++|++++| .+..+|. +.. +|+.|++++| .+..+|. .+++|+.|++++
T Consensus 82 L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 82 ITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN 149 (571)
T ss_dssp CSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS
T ss_pred CCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC
Confidence 4555554443 33333 23445555555542 3333444 222 4555555553 2333443 344555555554
Q ss_pred CCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCc---
Q 039944 181 GGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASL--- 257 (348)
Q Consensus 181 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L--- 257 (348)
| .++.+|. .+++|+.|++++| .+..++ . +. ++|+.|++++ +.+..+|. .. .+|
T Consensus 150 N-~l~~lp~---~l~~L~~L~Ls~N-~L~~lp----~-l~--~~L~~L~Ls~--N~L~~lp~-~~---------~~L~~~ 205 (571)
T 3cvr_A 150 N-QLTMLPE---LPTSLEVLSVRNN-QLTFLP----E-LP--ESLEALDVST--NLLESLPA-VP---------VRNHHS 205 (571)
T ss_dssp S-CCSCCCC---CCTTCCEEECCSS-CCSCCC----C-CC--TTCCEEECCS--SCCSSCCC-CC---------------
T ss_pred C-ccCcCCC---cCCCcCEEECCCC-CCCCcc----h-hh--CCCCEEECcC--CCCCchhh-HH---------Hhhhcc
Confidence 4 3333442 3445555555553 233332 1 11 4555555554 34444443 20 133
Q ss_pred ----cEEEeccCCCccccccccccCCCcceEeccCC
Q 039944 258 ----TSLWIEAFPNLERLSSSIVDLQNLTELYLFGC 289 (348)
Q Consensus 258 ----~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c 289 (348)
+.|++++ +.++.+|..+..+++|+.|++++|
T Consensus 206 ~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 206 EETEIFFRCRE-NRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp --CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSS
T ss_pred cccceEEecCC-CcceecCHHHhcCCCCCEEEeeCC
Confidence 5555555 344555554544555555555554
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=2.5e-12 Score=122.35 Aligned_cols=175 Identities=24% Similarity=0.294 Sum_probs=137.4
Q ss_pred CccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEec
Q 039944 100 SLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIG 179 (348)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~ 179 (348)
+++.|+++++. +..+|..+ .++|++|++++| .+..+| ..+++|+.|++++| .+..+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCC-CCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 38999999876 56677655 488999999984 566888 34679999999996 5677877 544 99999999
Q ss_pred cCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccE
Q 039944 180 KGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTS 259 (348)
Q Consensus 180 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~ 259 (348)
+| .+..+|. .+++|+.|+++++ .++.++ ..+++|+.|++++ +.+..+|. . . ++|+.
T Consensus 129 ~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp-------~~l~~L~~L~Ls~--N~L~~lp~-l-------~--~~L~~ 184 (571)
T 3cvr_A 129 NN-QLTMLPE---LPALLEYINADNN-QLTMLP-------ELPTSLEVLSVRN--NQLTFLPE-L-------P--ESLEA 184 (571)
T ss_dssp SS-CCSCCCC---CCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCS--SCCSCCCC-C-------C--TTCCE
T ss_pred CC-cCCCCCC---cCccccEEeCCCC-ccCcCC-------CcCCCcCEEECCC--CCCCCcch-h-------h--CCCCE
Confidence 87 5777884 7899999999995 466554 2578999999998 56777776 4 2 78999
Q ss_pred EEeccCCCccccccccccCCCc-------ceEeccCCCCCCCCCCCCC-CCCCcEEEEcCCch
Q 039944 260 LWIEAFPNLERLSSSIVDLQNL-------TELYLFGCPKLKYFPEKGL-PSSLLELRISRCPL 314 (348)
Q Consensus 260 L~l~~~~~l~~i~~~~~~~~~L-------~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~c~~ 314 (348)
|++++ +.++.+|. +.. +| +.|++++| .++.+|.... .++|+.|++++|+.
T Consensus 185 L~Ls~-N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 185 LDVST-NLLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EECCS-SCCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred EECcC-CCCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 99998 57888887 554 77 99999995 7888887322 78999999999973
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=8.8e-13 Score=126.66 Aligned_cols=192 Identities=16% Similarity=0.189 Sum_probs=142.3
Q ss_pred CccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcCC
Q 039944 30 SLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYGC 109 (348)
Q Consensus 30 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~ 109 (348)
.+..+.+.... +..+.. ...+. +|+.|++.++. +.. ++. + ..++. |+.|++++|
T Consensus 22 ~l~~l~l~~~~-i~~~~~---------~~~L~--~L~~L~l~~n~-i~~-l~~------l-----~~l~~-L~~L~Ls~N 75 (605)
T 1m9s_A 22 ETIKDNLKKKS-VTDAVT---------QNELN--SIDQIIANNSD-IKS-VQG------I-----QYLPN-VTKLFLNGN 75 (605)
T ss_dssp HHHHHHTTCSC-TTSEEC---------HHHHT--TCCCCBCTTCC-CCC-CTT------G-----GGCTT-CCEEECTTS
T ss_pred HHHHHhccCCC-cccccc---------hhcCC--CCCEEECcCCC-CCC-ChH------H-----ccCCC-CCEEEeeCC
Confidence 44455555544 444433 35666 99999998864 554 432 2 33476 999999988
Q ss_pred CCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccc
Q 039944 110 SKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEE 189 (348)
Q Consensus 110 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 189 (348)
. +..++. +..+++|+.|+++.| .+..++ .+..+++|+.|++++|. +..+ +.+..+++|+.|++++| .+..++
T Consensus 76 ~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N-~l~~l~- 147 (605)
T 1m9s_A 76 K-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN-KITDIT- 147 (605)
T ss_dssp C-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCG-
T ss_pred C-CCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCC-ccCCch-
Confidence 6 555554 889999999999985 566665 57778999999999964 5665 46888999999999987 566675
Q ss_pred cCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcc
Q 039944 190 EDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLE 269 (348)
Q Consensus 190 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 269 (348)
.+..+++|+.|++++| .+.... .+..+++|+.|++++ +.+..++. . ..+++|+.|++++| .+.
T Consensus 148 ~l~~l~~L~~L~Ls~N-~l~~~~-----~l~~l~~L~~L~Ls~--N~i~~l~~-l-------~~l~~L~~L~L~~N-~l~ 210 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDN-QISDIV-----PLAGLTKLQNLYLSK--NHISDLRA-L-------AGLKNLDVLELFSQ-ECL 210 (605)
T ss_dssp GGGSCTTCSEEECCSS-CCCCCG-----GGTTCTTCCEEECCS--SCCCBCGG-G-------TTCTTCSEEECCSE-EEE
T ss_pred hhcccCCCCEEECcCC-cCCCch-----hhccCCCCCEEECcC--CCCCCChH-H-------ccCCCCCEEEccCC-cCc
Confidence 7888999999999996 455544 267899999999998 56777654 3 47889999999985 444
Q ss_pred ccc
Q 039944 270 RLS 272 (348)
Q Consensus 270 ~i~ 272 (348)
..|
T Consensus 211 ~~p 213 (605)
T 1m9s_A 211 NKP 213 (605)
T ss_dssp CCC
T ss_pred CCc
Confidence 433
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=7.1e-15 Score=134.17 Aligned_cols=232 Identities=12% Similarity=0.070 Sum_probs=152.5
Q ss_pred cccccCCccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcCCC--Ccc-cchh-------hhcCCCccc
Q 039944 57 SRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYGCS--KLG-SIAE-------RLDNNTSLE 126 (348)
Q Consensus 57 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~--~~~-~~~~-------~~~~l~~L~ 126 (348)
++.++ +|++|+++++. +.. .....+...+ ..++. |+.|++++|. .+. .+|. .+..+++|+
T Consensus 28 l~~~~--~L~~L~L~~n~-i~~-~~~~~l~~~l-----~~~~~-L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 28 LLEDD--SVKEIVLSGNT-IGT-EAARWLSENI-----ASKKD-LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp HHHCS--CCCEEECTTSE-ECH-HHHHHHHHTT-----TTCTT-CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HhcCC--CccEEECCCCC-CCH-HHHHHHHHHH-----HhCCC-ccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 45566 89999999864 433 2111111112 22366 9999998873 221 2233 346899999
Q ss_pred eeccccccccc----ccCCCCCCCCCccEEEEecCCCcC----cccccccCC---------CCcceeEeccCCCC-Cccc
Q 039944 127 TISIDSCGNLV----SFPEGGLPCAKLTRLTILDCKRLE----ALPKGMHNL---------TSLQYLRIGKGGAL-PSLE 188 (348)
Q Consensus 127 ~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~~~~l~----~~~~~l~~l---------~~L~~L~l~~~~~~-~~~~ 188 (348)
+|++++|.... .++..+..+++|++|++++|..-. .++..+..+ ++|++|++++|.-. ..++
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 99999864332 255556667899999999976421 222233344 89999999987432 2333
Q ss_pred ---ccCCCCCCcCeeeecCCccchh-----hhhccccccCCCCCccEEEecccCCcc-----cccccchhccCCCCCCCC
Q 039944 189 ---EEDGLPTNLQSLDIWGNMEIWK-----SMIERGRGFHRFSSLRRLTISRCDEDM-----VSFPLEDKRLGTALPLPA 255 (348)
Q Consensus 189 ---~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~~l~~L~~L~l~~~c~~l-----~~~~~~~~~~~~~~~~~~ 255 (348)
..+..+++|+.|++++|. +.. ... ..+..+++|+.|++++ | .+ ..++... ..++
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~---~~l~~~~~L~~L~Ls~-n-~l~~~g~~~l~~~l-------~~~~ 244 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLL---EGLAYCQELKVLDLQD-N-TFTHLGSSALAIAL-------KSWP 244 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHH---TTGGGCTTCCEEECCS-S-CCHHHHHHHHHHHG-------GGCT
T ss_pred HHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHH---HHhhcCCCccEEECcC-C-CCCcHHHHHHHHHH-------ccCC
Confidence 244567899999999974 441 111 1467889999999998 4 45 3455444 4678
Q ss_pred CccEEEeccCCCccc-----cccccc--cCCCcceEeccCCCCCCC-----CCCCC--CCCCCcEEEEcCCc
Q 039944 256 SLTSLWIEAFPNLER-----LSSSIV--DLQNLTELYLFGCPKLKY-----FPEKG--LPSSLLELRISRCP 313 (348)
Q Consensus 256 ~L~~L~l~~~~~l~~-----i~~~~~--~~~~L~~L~l~~c~~l~~-----l~~~~--~~~~L~~L~l~~c~ 313 (348)
+|++|++++| .++. ++..+. .+++|+.|++++| .++. ++... .+++|++|++++|+
T Consensus 245 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 245 NLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp TCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 8999999996 4553 355553 3899999999996 4554 55421 15899999999986
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=7.2e-13 Score=114.30 Aligned_cols=143 Identities=15% Similarity=0.108 Sum_probs=93.2
Q ss_pred CCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCccee
Q 039944 97 LPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYL 176 (348)
Q Consensus 97 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L 176 (348)
++. |+.|++++|. +..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++| .++.+|.. .. ++|++|
T Consensus 40 l~~-L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~-~~-~~L~~L 111 (263)
T 1xeu_A 40 LSG-VQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGI-PS-ACLSRL 111 (263)
T ss_dssp HTT-CSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTC-CC-SSCCEE
T ss_pred cCc-CcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcc-cc-CcccEE
Confidence 355 8888887764 55555 5677788888888774 4555555 566777888888775 45555532 22 777888
Q ss_pred EeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCC
Q 039944 177 RIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPAS 256 (348)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~ 256 (348)
++++| .+..++ .+..+++|+.|+++++ .++..+ .+..+++|+.|++++ +.+..+ ... ..+++
T Consensus 112 ~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~-----~l~~l~~L~~L~L~~--N~i~~~-~~l-------~~l~~ 173 (263)
T 1xeu_A 112 FLDNN-ELRDTD-SLIHLKNLEILSIRNN-KLKSIV-----MLGFLSKLEVLDLHG--NEITNT-GGL-------TRLKK 173 (263)
T ss_dssp ECCSS-CCSBSG-GGTTCTTCCEEECTTS-CCCBCG-----GGGGCTTCCEEECTT--SCCCBC-TTS-------TTCCC
T ss_pred EccCC-ccCCCh-hhcCcccccEEECCCC-cCCCCh-----HHccCCCCCEEECCC--CcCcch-HHh-------ccCCC
Confidence 88776 556665 5677777777777774 344443 346677777777776 455544 222 35667
Q ss_pred ccEEEeccC
Q 039944 257 LTSLWIEAF 265 (348)
Q Consensus 257 L~~L~l~~~ 265 (348)
|+.|+++++
T Consensus 174 L~~L~l~~N 182 (263)
T 1xeu_A 174 VNWIDLTGQ 182 (263)
T ss_dssp CCEEEEEEE
T ss_pred CCEEeCCCC
Confidence 777777774
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=1.8e-12 Score=111.86 Aligned_cols=168 Identities=17% Similarity=0.185 Sum_probs=127.0
Q ss_pred ccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEecc
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGK 180 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~ 180 (348)
+..+++.++. +..++ .+..+++|++|++++| .+..++ .+..+++|+.|++++| .+..+++ +..+++|++|++++
T Consensus 21 l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHhcCCC-ccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCC
Confidence 5556666554 55554 4677899999999985 666776 5667889999999986 5777766 88899999999998
Q ss_pred CCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEE
Q 039944 181 GGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSL 260 (348)
Q Consensus 181 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L 260 (348)
| .+..++ .... ++|+.|+++++ .+...+ .+..+++|+.|++++ +.+..++. . ..+++|+.|
T Consensus 95 N-~l~~l~-~~~~-~~L~~L~L~~N-~l~~~~-----~l~~l~~L~~L~Ls~--N~i~~~~~-l-------~~l~~L~~L 155 (263)
T 1xeu_A 95 N-RLKNLN-GIPS-ACLSRLFLDNN-ELRDTD-----SLIHLKNLEILSIRN--NKLKSIVM-L-------GFLSKLEVL 155 (263)
T ss_dssp S-CCSCCT-TCCC-SSCCEEECCSS-CCSBSG-----GGTTCTTCCEEECTT--SCCCBCGG-G-------GGCTTCCEE
T ss_pred C-ccCCcC-cccc-CcccEEEccCC-ccCCCh-----hhcCcccccEEECCC--CcCCCChH-H-------ccCCCCCEE
Confidence 7 567776 3444 89999999995 455554 467889999999998 56777653 3 367899999
Q ss_pred EeccCCCccccccccccCCCcceEeccCCCCCCCCC
Q 039944 261 WIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFP 296 (348)
Q Consensus 261 ~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~ 296 (348)
++++ +.++.+ ..+..+++|+.|++++++ +...|
T Consensus 156 ~L~~-N~i~~~-~~l~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 156 DLHG-NEITNT-GGLTRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp ECTT-SCCCBC-TTSTTCCCCCEEEEEEEE-EECCC
T ss_pred ECCC-CcCcch-HHhccCCCCCEEeCCCCc-ccCCc
Confidence 9998 467766 578889999999999853 44333
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=4.6e-14 Score=127.67 Aligned_cols=178 Identities=14% Similarity=0.059 Sum_probs=81.5
Q ss_pred ccEEEEcCCCCcccchh----hhcCC-CccceecccccccccccCC-----CCCC-CCCccEEEEecCCCcC----cccc
Q 039944 101 LKSLFVYGCSKLGSIAE----RLDNN-TSLETISIDSCGNLVSFPE-----GGLP-CAKLTRLTILDCKRLE----ALPK 165 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~l~~~~~-----~~~~-~~~L~~L~l~~~~~l~----~~~~ 165 (348)
|+.|++++|......+. .+..+ ++|++|++++|. +...+. .+.. .++|++|++++|..-. .++.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 66666666653222222 22333 566666666643 322221 1111 2366666666643211 2222
Q ss_pred cccCCC-CcceeEeccCCCCCcccc-----cCCCC-CCcCeeeecCCccchh-----hhhccccccCC-CCCccEEEecc
Q 039944 166 GMHNLT-SLQYLRIGKGGALPSLEE-----EDGLP-TNLQSLDIWGNMEIWK-----SMIERGRGFHR-FSSLRRLTISR 232 (348)
Q Consensus 166 ~l~~l~-~L~~L~l~~~~~~~~~~~-----~~~~~-~~L~~L~l~~~~~l~~-----~~~~~~~~~~~-l~~L~~L~l~~ 232 (348)
.+..++ +|++|++++| .+..... .+... ++|+.|++++|. +.. ++. .+.. .++|+.|++++
T Consensus 161 ~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~----~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAY----IFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHH----HHHHSCTTCCEEECCS
T ss_pred HHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHH----HHhcCCCCceEEECcC
Confidence 333343 6666666665 2322210 12223 466677766643 332 221 1222 34677777766
Q ss_pred cCCcccccccchhccCCCCCCCCCccEEEeccCC-------CccccccccccCCCcceEeccCC
Q 039944 233 CDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFP-------NLERLSSSIVDLQNLTELYLFGC 289 (348)
Q Consensus 233 ~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~i~~~~~~~~~L~~L~l~~c 289 (348)
+.+...+... +......+++|+.|++++|. .+..++..+..+++|+.|+++++
T Consensus 235 --N~l~~~~~~~--l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 235 --NCLHGPSLEN--LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp --SCCCCCCHHH--HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred --CCCCcHHHHH--HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 3443322210 01112345567777776642 02223334556666777777664
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=1.9e-11 Score=103.10 Aligned_cols=146 Identities=24% Similarity=0.267 Sum_probs=71.9
Q ss_pred ceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccc-cCCCCCCcCeeeecC
Q 039944 126 ETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEE-EDGLPTNLQSLDIWG 204 (348)
Q Consensus 126 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~ 204 (348)
+.++.++ ..+..+|..+. ++|+.|++++|..-...|..+..+++|++|++++| .+..++. .+..+++|+.|++++
T Consensus 22 ~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 3455544 44555665443 46666666664322222344556666666666665 3444442 234555555555555
Q ss_pred CccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccccc-ccccCCCcce
Q 039944 205 NMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTE 283 (348)
Q Consensus 205 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~ 283 (348)
+ .+..++.. .+..+++|+.|++++ +.+..+|... ..+++|+.|++++ +.++.++. .+..+++|+.
T Consensus 98 N-~l~~l~~~---~~~~l~~L~~L~Ls~--N~l~~lp~~~-------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 98 N-QLTVLPSA---VFDRLVHLKELFMCC--NKLTELPRGI-------ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp S-CCCCCCTT---TTTTCTTCCEEECCS--SCCCSCCTTG-------GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred C-cCCccChh---HhCcchhhCeEeccC--CcccccCccc-------ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCE
Confidence 3 33333321 234555555555554 3444444433 2444555555555 34444443 3444555555
Q ss_pred EeccCC
Q 039944 284 LYLFGC 289 (348)
Q Consensus 284 L~l~~c 289 (348)
|++.++
T Consensus 164 L~l~~N 169 (229)
T 3e6j_A 164 AYLFGN 169 (229)
T ss_dssp EECTTS
T ss_pred EEeeCC
Confidence 555543
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.34 E-value=1.3e-11 Score=102.45 Aligned_cols=162 Identities=21% Similarity=0.296 Sum_probs=93.3
Q ss_pred cEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCC
Q 039944 9 EILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPAT 88 (348)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 88 (348)
+.++.++ ..++.+|. ..+++|++|+++++. ++.++.. .++.+. +|++|+++++ .+.. ++...+
T Consensus 10 ~~v~c~~-~~l~~~p~-~~~~~l~~L~l~~n~-l~~~~~~-------~~~~l~--~L~~L~l~~n-~l~~-~~~~~~--- 72 (208)
T 2o6s_A 10 TTVECYS-QGRTSVPT-GIPAQTTYLDLETNS-LKSLPNG-------VFDELT--SLTQLYLGGN-KLQS-LPNGVF--- 72 (208)
T ss_dssp TEEECCS-SCCSSCCS-CCCTTCSEEECCSSC-CCCCCTT-------TTTTCT--TCSEEECCSS-CCCC-CCTTTT---
T ss_pred CEEEecC-CCccCCCC-CCCCCCcEEEcCCCc-cCcCChh-------hhcccc--cCcEEECCCC-ccCc-cChhhc---
Confidence 3455554 34555653 235678888888876 6666655 456666 7888888764 4544 443222
Q ss_pred cceeEeccCCCCccEEEEcCCCCcccch-hhhcCCCccceecccccccccccCCC-CCCCCCccEEEEecCCCcCccccc
Q 039944 89 LESLEVGNLPLSLKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSCGNLVSFPEG-GLPCAKLTRLTILDCKRLEALPKG 166 (348)
Q Consensus 89 L~~L~i~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~ 166 (348)
..++. |+.|++++|. +..++ ..+..+++|++|++++| .+..++.. +..+++|+.|++++| .+..++..
T Consensus 73 ------~~l~~-L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 142 (208)
T 2o6s_A 73 ------NKLTS-LTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDG 142 (208)
T ss_dssp ------TTCTT-CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred ------CCCCC-cCEEECCCCc-CCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHH
Confidence 22354 7777777665 33333 34566777777777763 44455443 445667777777664 34444433
Q ss_pred -ccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecC
Q 039944 167 -MHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWG 204 (348)
Q Consensus 167 -l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 204 (348)
+..+++|++|++++|+ ..+.+++|+.|+++.
T Consensus 143 ~~~~l~~L~~L~l~~N~-------~~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNP-------WDCTCPGIRYLSEWI 174 (208)
T ss_dssp TTTTCTTCCEEECCSCC-------BCCCTTTTHHHHHHH
T ss_pred HhccCCCccEEEecCCC-------eecCCCCHHHHHHHH
Confidence 4566667777666652 223445566665555
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=3.6e-14 Score=128.39 Aligned_cols=229 Identities=17% Similarity=0.079 Sum_probs=137.8
Q ss_pred ccceeeeeCCCCccccccCCCCCCCcceeEeccCCCCccEEEEcCCCCcccchhhhcCC-----Cccceecccccccccc
Q 039944 64 LLEHLEIISCPSLTCIFSKNELPATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNN-----TSLETISIDSCGNLVS 138 (348)
Q Consensus 64 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~ 138 (348)
+|++|+++++. +.+ .+...+...+ ..+|.+|+.|++++|......+..+..+ ++|++|++++|. +..
T Consensus 23 ~L~~L~Ls~n~-l~~-~~~~~l~~~l-----~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~ 94 (362)
T 3goz_A 23 GVTSLDLSLNN-LYS-ISTVELIQAF-----ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSY 94 (362)
T ss_dssp TCCEEECTTSC-GGG-SCHHHHHHHH-----HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGG
T ss_pred CceEEEccCCC-CCh-HHHHHHHHHH-----HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CCh
Confidence 57777777653 443 3221111111 2235238888888876433334444443 999999999964 433
Q ss_pred cCC-----CCCCC-CCccEEEEecCCCcCcccc-c----ccC-CCCcceeEeccCCCCC-----cccccCCCC-CCcCee
Q 039944 139 FPE-----GGLPC-AKLTRLTILDCKRLEALPK-G----MHN-LTSLQYLRIGKGGALP-----SLEEEDGLP-TNLQSL 200 (348)
Q Consensus 139 ~~~-----~~~~~-~~L~~L~l~~~~~l~~~~~-~----l~~-l~~L~~L~l~~~~~~~-----~~~~~~~~~-~~L~~L 200 (348)
.+. .+..+ ++|++|++++|. +...+. . +.. .++|++|++++| .+. .++..+... ++|+.|
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEe
Confidence 222 12233 689999999976 444432 2 333 369999999987 444 222233344 499999
Q ss_pred eecCCccchhhhhc-cccccCCC-CCccEEEecccCCcccc-----cccchhccCCCCCCCCCccEEEeccCCCcccccc
Q 039944 201 DIWGNMEIWKSMIE-RGRGFHRF-SSLRRLTISRCDEDMVS-----FPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS 273 (348)
Q Consensus 201 ~l~~~~~l~~~~~~-~~~~~~~l-~~L~~L~l~~~c~~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 273 (348)
++++|. +...... ....+..+ ++|++|++++ +.+.. ++.... ..+++|++|++++| .++..+.
T Consensus 173 ~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~N-~l~~~~~ 242 (362)
T 3goz_A 173 NLRGNN-LASKNCAELAKFLASIPASVTSLDLSA--NLLGLKSYAELAYIFS------SIPNHVVSLNLCLN-CLHGPSL 242 (362)
T ss_dssp ECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTT--SCGGGSCHHHHHHHHH------HSCTTCCEEECCSS-CCCCCCH
T ss_pred eecCCC-CchhhHHHHHHHHHhCCCCCCEEECCC--CCCChhHHHHHHHHHh------cCCCCceEEECcCC-CCCcHHH
Confidence 999964 4332211 00123455 5999999998 45554 333331 12468999999985 5655432
Q ss_pred -----ccccCCCcceEeccCCCCCCCCC--------C-CCCCCCCcEEEEcCCc
Q 039944 274 -----SIVDLQNLTELYLFGCPKLKYFP--------E-KGLPSSLLELRISRCP 313 (348)
Q Consensus 274 -----~~~~~~~L~~L~l~~c~~l~~l~--------~-~~~~~~L~~L~l~~c~ 313 (348)
.+..+++|+.|++++|. +..+. . ....++|+.|+++++.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 45778999999999864 22222 1 1125779999999886
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=1.9e-11 Score=103.14 Aligned_cols=127 Identities=22% Similarity=0.219 Sum_probs=52.4
Q ss_pred CCcceeEeccCCCCCcc-cccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCC
Q 039944 171 TSLQYLRIGKGGALPSL-EEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGT 249 (348)
Q Consensus 171 ~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~ 249 (348)
++|++|++++| .+..+ +..+..+++|+.|+++++. +..++.. .+..+++|+.|++++ +.+..++...
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~---~~~~l~~L~~L~Ls~--N~l~~l~~~~----- 107 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPVG---VFDSLTQLTVLDLGT--NQLTVLPSAV----- 107 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCS--SCCCCCCTTT-----
T ss_pred CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcChh---hcccCCCcCEEECCC--CcCCccChhH-----
Confidence 44444544443 22222 2233444445555544422 2332211 234444445555544 2333333321
Q ss_pred CCCCCCCccEEEeccCCCccccccccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEcCC
Q 039944 250 ALPLPASLTSLWIEAFPNLERLSSSIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRISRC 312 (348)
Q Consensus 250 ~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c 312 (348)
+..+++|+.|++++ +.++.+|..+..+++|+.|+++++ .++.++...+ .++|+.|+++++
T Consensus 108 -~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 108 -FDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp -TTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred -hCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 12344444555544 234444444444444555555442 3444443222 344444444443
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=3.3e-11 Score=100.97 Aligned_cols=147 Identities=13% Similarity=0.203 Sum_probs=72.5
Q ss_pred cEEeecCcccccccCCCCCCCCccEEEeccCccccccc-cccccccccccccccCCccceeeeeCCCCccccccCCCCCC
Q 039944 9 EILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLT-VEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPA 87 (348)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 87 (348)
+.+++++ +.++++|. ..++.+++|+++++. +..++ .. .+..++ +|+.|+++++ .++. ++...+
T Consensus 14 ~~l~~s~-n~l~~iP~-~~~~~~~~L~L~~N~-l~~~~~~~-------~~~~l~--~L~~L~L~~N-~i~~-i~~~~~-- 77 (220)
T 2v70_A 14 TTVDCSN-QKLNKIPE-HIPQYTAELRLNNNE-FTVLEATG-------IFKKLP--QLRKINFSNN-KITD-IEEGAF-- 77 (220)
T ss_dssp TEEECCS-SCCSSCCS-CCCTTCSEEECCSSC-CCEECCCC-------CGGGCT--TCCEEECCSS-CCCE-ECTTTT--
T ss_pred CEeEeCC-CCcccCcc-CCCCCCCEEEcCCCc-CCccCchh-------hhccCC--CCCEEECCCC-cCCE-ECHHHh--
Confidence 4556654 34555554 224456666666665 55553 22 245555 6666666653 3444 333222
Q ss_pred CcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceeccccccccccc-CCCCCCCCCccEEEEecCCCcCcc-cc
Q 039944 88 TLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSF-PEGGLPCAKLTRLTILDCKRLEAL-PK 165 (348)
Q Consensus 88 ~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~ 165 (348)
..++. |+.|++++|......+..+..+++|++|++++| .+..+ |..+..+++|+.|++++|. +..+ |.
T Consensus 78 -------~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 147 (220)
T 2v70_A 78 -------EGASG-VNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPG 147 (220)
T ss_dssp -------TTCTT-CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTT
T ss_pred -------CCCCC-CCEEECCCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCc-CCEECHH
Confidence 22244 666666655533333344555666666666653 23333 3344445555555555532 3333 33
Q ss_pred cccCCCCcceeEeccC
Q 039944 166 GMHNLTSLQYLRIGKG 181 (348)
Q Consensus 166 ~l~~l~~L~~L~l~~~ 181 (348)
.+..+++|++|++++|
T Consensus 148 ~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 148 AFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTTTCTTCCEEECCSC
T ss_pred HhcCCCCCCEEEecCc
Confidence 4445555555555544
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=1e-11 Score=103.13 Aligned_cols=160 Identities=19% Similarity=0.188 Sum_probs=119.4
Q ss_pred CCcccEEeecCcccccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccC
Q 039944 5 NSSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSK 82 (348)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 82 (348)
.++|++|+++++ .++.++...+ +++|++|+++++. +..++.. .+..+. +|++|+++++ .+.. ++.
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-------~~~~l~--~L~~L~Ls~n-~l~~-~~~ 93 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNG-------VFNKLT--SLTYLNLSTN-QLQS-LPN 93 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTT-------TTTTCT--TCCEEECCSS-CCCC-CCT
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCc-cCccChh-------hcCCCC--CcCEEECCCC-cCCc-cCH
Confidence 458999999985 6777876543 8999999999987 7888776 467777 9999999985 4655 554
Q ss_pred CCCCCCcceeEeccCCCCccEEEEcCCCCcccch-hhhcCCCccceecccccccccccCCC-CCCCCCccEEEEecCCCc
Q 039944 83 NELPATLESLEVGNLPLSLKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSCGNLVSFPEG-GLPCAKLTRLTILDCKRL 160 (348)
Q Consensus 83 ~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l 160 (348)
..+ ..+++ |+.|++++|. +..++ ..+..+++|++|++++| .+..++.. +..+++|+.|++++|..
T Consensus 94 ~~~---------~~l~~-L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~- 160 (208)
T 2o6s_A 94 GVF---------DKLTQ-LKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW- 160 (208)
T ss_dssp TTT---------TTCTT-CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB-
T ss_pred hHh---------cCccC-CCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe-
Confidence 322 33466 9999999886 44444 45788999999999985 56666664 56789999999999742
Q ss_pred CcccccccCCCCcceeEeccCCCCCcccccCCCCCC
Q 039944 161 EALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTN 196 (348)
Q Consensus 161 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 196 (348)
.+.++.|++|+++.+.....+|..++.++.
T Consensus 161 ------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 161 ------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 245678999988877555567755554443
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.28 E-value=5.2e-11 Score=99.75 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=6.4
Q ss_pred cccCCCCcceeEecc
Q 039944 166 GMHNLTSLQYLRIGK 180 (348)
Q Consensus 166 ~l~~l~~L~~L~l~~ 180 (348)
.+..+++|++|++++
T Consensus 75 ~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 75 AFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTTTCSSCCEEECCS
T ss_pred HhhCCcCCCEEECCC
Confidence 334444444444444
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=1.8e-11 Score=110.49 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=33.6
Q ss_pred ccceecccccccccccCCCC-C-CCCCccEEEEecCCCcCccc-ccccCCCCcceeEeccCCCCCcccc-cCCCCCCcCe
Q 039944 124 SLETISIDSCGNLVSFPEGG-L-PCAKLTRLTILDCKRLEALP-KGMHNLTSLQYLRIGKGGALPSLEE-EDGLPTNLQS 199 (348)
Q Consensus 124 ~L~~L~l~~~~~l~~~~~~~-~-~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~ 199 (348)
.++.|++++ +.+..++... . .+++|+.|++++| .+..++ ..+..+++|++|++++| .+..++. .+..+++|+.
T Consensus 40 ~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 40 YTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCC-CCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCE
Confidence 345555554 2333333322 2 4445555555543 233333 23444555555555544 2333321 2334444555
Q ss_pred eeecC
Q 039944 200 LDIWG 204 (348)
Q Consensus 200 L~l~~ 204 (348)
|++++
T Consensus 117 L~L~~ 121 (361)
T 2xot_A 117 LLLYN 121 (361)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 55544
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=7.8e-11 Score=98.67 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=56.5
Q ss_pred ccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCC-CCCCCCccEEEEecCCCcCcc-cccccCCCCcceeEe
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEG-GLPCAKLTRLTILDCKRLEAL-PKGMHNLTSLQYLRI 178 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~L~l 178 (348)
|+.|++++|......+..+..+++|++|++++ +.+..+|.. +..+++|+.|++++|. +..+ |..+..+++|++|++
T Consensus 58 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEEC
Confidence 55566655543222245555666666666665 344455543 2445666666666643 3333 344566666777777
Q ss_pred ccCCCCCcccc-cCCCCCCcCeeeecCC
Q 039944 179 GKGGALPSLEE-EDGLPTNLQSLDIWGN 205 (348)
Q Consensus 179 ~~~~~~~~~~~-~~~~~~~L~~L~l~~~ 205 (348)
++| .+..++. .+..+++|+.|++.++
T Consensus 136 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 136 YDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 665 3444442 3555667777777664
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=3.1e-11 Score=108.99 Aligned_cols=169 Identities=20% Similarity=0.233 Sum_probs=98.6
Q ss_pred cEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccc-cccCCccceeeeeCCCCccccccCCCCCC
Q 039944 9 EILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSR-RYTSSLLEHLEIISCPSLTCIFSKNELPA 87 (348)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 87 (348)
+.+++++ ..++.+|. .+++.++.|+++++. +..++.. .+. .+. +|+.|+++++ .+.. ++...+
T Consensus 21 ~~l~c~~-~~l~~iP~-~~~~~l~~L~Ls~N~-l~~l~~~-------~~~~~l~--~L~~L~L~~N-~i~~-i~~~~~-- 84 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQ-SLPSYTALLDLSHNN-LSRLRAE-------WTPTRLT--NLHSLLLSHN-HLNF-ISSEAF-- 84 (361)
T ss_dssp TEEECCS-SCCSSCCS-SCCTTCSEEECCSSC-CCEECTT-------SSSSCCT--TCCEEECCSS-CCCE-ECTTTT--
T ss_pred CEEEeCC-CCcCccCc-cCCCCCCEEECCCCC-CCccChh-------hhhhccc--ccCEEECCCC-cCCc-cChhhc--
Confidence 4566665 45666664 235567777777775 6666655 344 555 7777777764 4555 443322
Q ss_pred CcceeEeccCCCCccEEEEcCCCCcccc-hhhhcCCCccceeccccccccccc-CCCCCCCCCccEEEEecCCCcCcccc
Q 039944 88 TLESLEVGNLPLSLKSLFVYGCSKLGSI-AERLDNNTSLETISIDSCGNLVSF-PEGGLPCAKLTRLTILDCKRLEALPK 165 (348)
Q Consensus 88 ~L~~L~i~~l~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~ 165 (348)
..++. |+.|++++|. +..+ +..+..+++|+.|++++| .+..+ +..+..+++|+.|++++| .+..+|.
T Consensus 85 -------~~l~~-L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~ 153 (361)
T 2xot_A 85 -------VPVPN-LRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPV 153 (361)
T ss_dssp -------TTCTT-CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCG
T ss_pred -------cCCCC-CCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeCH
Confidence 23355 7777777765 4443 345666777777777774 34444 345566677777777774 4555654
Q ss_pred cc----cCCCCcceeEeccCCCCCcccc-cCCCCCC--cCeeeecCC
Q 039944 166 GM----HNLTSLQYLRIGKGGALPSLEE-EDGLPTN--LQSLDIWGN 205 (348)
Q Consensus 166 ~l----~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~--L~~L~l~~~ 205 (348)
.+ ..+++|++|++++| .+..++. .+..++. ++.|++.++
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp GGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred HHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCC
Confidence 43 45677777777765 4444441 2333443 356666664
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.24 E-value=1.1e-10 Score=97.64 Aligned_cols=145 Identities=14% Similarity=0.188 Sum_probs=63.9
Q ss_pred eecccccccccccCCCCCCCCCccEEEEecCCCcCcccc--cccCCCCcceeEeccCCCCCcccc-cCCCCCCcCeeeec
Q 039944 127 TISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPK--GMHNLTSLQYLRIGKGGALPSLEE-EDGLPTNLQSLDIW 203 (348)
Q Consensus 127 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~ 203 (348)
.+++++ +.+..+|..+.. .++.|++++| .+..+++ .+..+++|++|+++++ .+..++. .+..+++|+.|+++
T Consensus 15 ~l~~s~-n~l~~iP~~~~~--~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCSN-QKLNKIPEHIPQ--YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEECCS-SCCSSCCSCCCT--TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred EeEeCC-CCcccCccCCCC--CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence 444444 334444443322 3455555553 2333321 2345555555555554 2333332 34445555555555
Q ss_pred CCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccc-ccccccCCCcc
Q 039944 204 GNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERL-SSSIVDLQNLT 282 (348)
Q Consensus 204 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~ 282 (348)
++ .+..++. ..+..+++|+.|++++ +.+..++.. ++..+++|+.|++++ +.++.+ |..+..+++|+
T Consensus 90 ~N-~l~~~~~---~~~~~l~~L~~L~Ls~--N~l~~~~~~------~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 90 SN-RLENVQH---KMFKGLESLKTLMLRS--NRITCVGND------SFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp SS-CCCCCCG---GGGTTCSSCCEEECTT--SCCCCBCTT------SSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCC
T ss_pred CC-ccCccCH---hHhcCCcCCCEEECCC--CcCCeECHh------HcCCCccCCEEECCC-CcCCEECHHHhcCCCCCC
Confidence 53 2333222 1344555555555555 334433221 112444555555555 234433 33455555555
Q ss_pred eEeccCC
Q 039944 283 ELYLFGC 289 (348)
Q Consensus 283 ~L~l~~c 289 (348)
.|+++++
T Consensus 157 ~L~L~~N 163 (220)
T 2v70_A 157 TLNLLAN 163 (220)
T ss_dssp EEECCSC
T ss_pred EEEecCc
Confidence 5555553
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=1.8e-11 Score=109.09 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=58.0
Q ss_pred CCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCcc-EEEeccCCCccccc
Q 039944 194 PTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLT-SLWIEAFPNLERLS 272 (348)
Q Consensus 194 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~i~ 272 (348)
+++|+.+++.++ .+..++. ..|.++.+|+.+++.+ + +..++. .+|..+++|+ .+.+.+ .++.++
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~---~aF~~~~~L~~l~l~~--n-i~~I~~------~aF~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPD---FTFAQKKYLLKIKLPH--N-LKTIGQ------RVFSNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTB-CCCEECT---TTTTTCTTCCEEECCT--T-CCEECT------TTTTTCTTCCEEEEECT--TCCEEC
T ss_pred cCCCeEEECCCC-CcceecH---hhhhCCCCCCEEECCc--c-cceehH------HHhhCChhccEEEEEcc--cceEEc
Confidence 566777777663 3444443 2566677777777765 2 555444 2345566676 777764 455555
Q ss_pred c-ccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEE
Q 039944 273 S-SIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELR 308 (348)
Q Consensus 273 ~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~ 308 (348)
. .|.+|++|+.+++.+ +.++.++...+ +++|+.++
T Consensus 290 ~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred hhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 3 566677777777655 45666655433 45555554
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=1e-13 Score=132.29 Aligned_cols=190 Identities=14% Similarity=0.046 Sum_probs=119.0
Q ss_pred CCCCccEEEEcCCCCcccchhhhcCCCccceecccccc-------------cccccCCCCCCCCCccEEE-EecCCCcCc
Q 039944 97 LPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCG-------------NLVSFPEGGLPCAKLTRLT-ILDCKRLEA 162 (348)
Q Consensus 97 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~l~~~~~~~~~~~~L~~L~-l~~~~~l~~ 162 (348)
.+. |+.|+++++. ++.+|..++.+++|+.|+++++. .....|..+..+++|+.|+ +.. ..+..
T Consensus 348 ~~~-L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~~ 424 (567)
T 1dce_A 348 DEQ-LFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLDD 424 (567)
T ss_dssp TTT-SSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred Ccc-ceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccch
Confidence 455 7777777664 66778888888888888876543 1222233333445566655 222 11111
Q ss_pred ccc------ccc--CCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccC
Q 039944 163 LPK------GMH--NLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCD 234 (348)
Q Consensus 163 ~~~------~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c 234 (348)
++. .+. ....|+.|++++| .++.+| .++.+++|+.|+++++ .+..++ ..+..+++|+.|++++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp-~~~~l~~L~~L~Ls~N-~l~~lp----~~~~~l~~L~~L~Ls~-- 495 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLC-HLEQLLLVTHLDLSHN-RLRALP----PALAALRCLEVLQASD-- 495 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCC-CGGGGTTCCEEECCSS-CCCCCC----GGGGGCTTCCEEECCS--
T ss_pred hhhhhhhcccccccCccCceEEEecCC-CCCCCc-CccccccCcEeecCcc-cccccc----hhhhcCCCCCEEECCC--
Confidence 111 010 1125778888876 566677 4777788888888874 455555 2467788888888887
Q ss_pred CcccccccchhccCCCCCCCCCccEEEeccCCCcccc--ccccccCCCcceEeccCCCCCCCCCCCCC-----CCCCcEE
Q 039944 235 EDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERL--SSSIVDLQNLTELYLFGCPKLKYFPEKGL-----PSSLLEL 307 (348)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-----~~~L~~L 307 (348)
+.+..+| .. ..+++|+.|++++ +.++.+ |..+..+++|+.|++++| .++.+|.... .++|+.|
T Consensus 496 N~l~~lp-~l-------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 496 NALENVD-GV-------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp SCCCCCG-GG-------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCCc-cc-------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCcc
Confidence 5666666 44 3677888888887 466666 677888888888888874 4555554221 5677776
Q ss_pred E
Q 039944 308 R 308 (348)
Q Consensus 308 ~ 308 (348)
+
T Consensus 566 ~ 566 (567)
T 1dce_A 566 L 566 (567)
T ss_dssp E
T ss_pred C
Confidence 5
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=1.5e-13 Score=131.19 Aligned_cols=199 Identities=18% Similarity=0.146 Sum_probs=126.6
Q ss_pred CCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCC------------CccccccCCCCCCCcceeEe
Q 039944 27 LPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCP------------SLTCIFSKNELPATLESLEV 94 (348)
Q Consensus 27 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------~l~~~~~~~~~~~~L~~L~i 94 (348)
..++|+.|+++++. ++.+|.. ++.++ +|++|++.++- ......|. .+
T Consensus 347 ~~~~L~~L~Ls~n~-L~~Lp~~--------i~~l~--~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-----~l----- 405 (567)
T 1dce_A 347 TDEQLFRCELSVEK-STVLQSE--------LESCK--ELQELEPENKWCLLTIILLMRALDPLLYEKE-----TL----- 405 (567)
T ss_dssp TTTTSSSCCCCHHH-HHHHHHH--------HHHHH--HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-----HH-----
T ss_pred cCccceeccCChhh-HHhhHHH--------HHHHH--HHHHhccccchhhhhHHHHHHhcccccCCHH-----HH-----
Confidence 37788888888887 7888876 67777 88888874421 01110111 11
Q ss_pred ccCCCCccEEE-EcCCCCcccchh------hhcC--CCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccc
Q 039944 95 GNLPLSLKSLF-VYGCSKLGSIAE------RLDN--NTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPK 165 (348)
Q Consensus 95 ~~l~~~L~~L~-l~~~~~~~~~~~------~~~~--l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 165 (348)
..+++ |+.|+ ++.+ .+..++. .+.. ...|+.|++++ +.+..+|. +..+++|+.|++++| .+..+|.
T Consensus 406 ~~l~~-L~~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~-n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~ 480 (567)
T 1dce_A 406 QYFST-LKAVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAH-KDLTVLCH-LEQLLLVTHLDLSHN-RLRALPP 480 (567)
T ss_dssp HHHHH-HHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTT-SCCSSCCC-GGGGTTCCEEECCSS-CCCCCCG
T ss_pred HHHHh-cccCcchhhc-ccchhhhhhhhcccccccCccCceEEEecC-CCCCCCcC-ccccccCcEeecCcc-cccccch
Confidence 11122 44433 2111 1111100 0111 13588888888 46667776 777888999999885 4668888
Q ss_pred cccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhh-hccccccCCCCCccEEEecccCCcccccccch
Q 039944 166 GMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSM-IERGRGFHRFSSLRRLTISRCDEDMVSFPLED 244 (348)
Q Consensus 166 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~ 244 (348)
.+..+++|++|++++| .++.+| .++.+++|+.|++++| .+.... . ..+..+++|+.|++++ +.+...+...
T Consensus 481 ~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p---~~l~~l~~L~~L~L~~--N~l~~~~~~~ 552 (567)
T 1dce_A 481 ALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAI---QPLVSCPRLVLLNLQG--NSLCQEEGIQ 552 (567)
T ss_dssp GGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTT---GGGGGCTTCCEEECTT--SGGGGSSSCT
T ss_pred hhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCc---HHHhcCCCCCEEEecC--CcCCCCccHH
Confidence 8888999999999887 566787 7888899999999885 455552 1 3577889999999998 5677666533
Q ss_pred hccCCCCCCCCCccEEEe
Q 039944 245 KRLGTALPLPASLTSLWI 262 (348)
Q Consensus 245 ~~~~~~~~~~~~L~~L~l 262 (348)
.. ....+++|+.|++
T Consensus 553 ~~---l~~~lp~L~~L~l 567 (567)
T 1dce_A 553 ER---LAEMLPSVSSILT 567 (567)
T ss_dssp TH---HHHHCTTCSEEEC
T ss_pred HH---HHHHCcccCccCC
Confidence 10 0013677887753
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=3.7e-11 Score=96.11 Aligned_cols=129 Identities=22% Similarity=0.236 Sum_probs=69.3
Q ss_pred CccEEEEcCCCCc-ccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEe
Q 039944 100 SLKSLFVYGCSKL-GSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRI 178 (348)
Q Consensus 100 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 178 (348)
+++.|++++|... ..++..+..+++|++|++++|. +..+ ..+..+++|+.|++++|.....+|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3666666666522 2455555666667777776643 4444 44555666777777765432224444455667777777
Q ss_pred ccCCCCCccc--ccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecc
Q 039944 179 GKGGALPSLE--EEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 179 ~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 232 (348)
++| .+..++ ..+..+++|+.|+++++ .+...+......+..+++|+.|++++
T Consensus 103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 103 SGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp BSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred cCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCC
Confidence 665 444443 34555566666666664 23333310001344556666666655
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=1.3e-10 Score=92.88 Aligned_cols=131 Identities=19% Similarity=0.175 Sum_probs=70.2
Q ss_pred CCccEEEEecCCCcC--cccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchh-hhhccccccCCCC
Q 039944 147 AKLTRLTILDCKRLE--ALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWK-SMIERGRGFHRFS 223 (348)
Q Consensus 147 ~~L~~L~l~~~~~l~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~ 223 (348)
++|+.|++++|. +. .+|..+..+++|++|++++|. +..+ ..++.+++|+.|+++++. +.. .+ ..+..++
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~----~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGGLD----MLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSCCC----HHHHHCT
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchHHH----HHHhhCC
Confidence 355555555543 33 444444555556666665542 4444 245555666666666543 222 22 1233466
Q ss_pred CccEEEecccCCcccccc--cchhccCCCCCCCCCccEEEeccCCCcccccc----ccccCCCcceEeccCCCCCCCCC
Q 039944 224 SLRRLTISRCDEDMVSFP--LEDKRLGTALPLPASLTSLWIEAFPNLERLSS----SIVDLQNLTELYLFGCPKLKYFP 296 (348)
Q Consensus 224 ~L~~L~l~~~c~~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~----~~~~~~~L~~L~l~~c~~l~~l~ 296 (348)
+|+.|++++ +.+..++ ... ..+++|+.|++++| .+..++. .+..+++|+.|++.+| .+..+|
T Consensus 96 ~L~~L~Ls~--N~l~~~~~~~~l-------~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~ 163 (168)
T 2ell_A 96 NLTHLNLSG--NKLKDISTLEPL-------KKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAP 163 (168)
T ss_dssp TCCEEECBS--SSCCSSGGGGGG-------SSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCC
T ss_pred CCCEEeccC--CccCcchhHHHH-------hcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC-Chhhcc
Confidence 677777766 3455544 222 35566777777763 4555554 5666777777777775 334444
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.14 E-value=8.7e-09 Score=94.03 Aligned_cols=257 Identities=12% Similarity=0.121 Sum_probs=144.0
Q ss_pred CcccEEeecCcccccccCCCCC-CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCC
Q 039944 6 SSLEILDIEKCHSLTYIAAVQL-PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNE 84 (348)
Q Consensus 6 ~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 84 (348)
..++.+.+-+ .++.++...| -.+|+.+.+... ++.++.. .|.++ +|+.+.+.. .+.. ++...
T Consensus 113 ~~l~~i~ip~--~i~~I~~~aF~~~~L~~i~l~~~--i~~I~~~-------aF~~~---~L~~i~lp~--~l~~-I~~~a 175 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDAFRNSQIAKVVLNEG--LKSIGDM-------AFFNS---TVQEIVFPS--TLEQ-LKEDI 175 (401)
T ss_dssp SSCSEEECCT--TCCEECTTTTTTCCCSEEECCTT--CCEECTT-------TTTTC---CCCEEECCT--TCCE-ECSST
T ss_pred CCccEEEECC--ccCEehHhhcccCCccEEEeCCC--ccEECHH-------hcCCC---CceEEEeCC--CccE-ehHHH
Confidence 3445555542 4555555444 235666666543 4555554 34442 466666653 3444 44433
Q ss_pred CCCCcceeEeccCCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCcc
Q 039944 85 LPATLESLEVGNLPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEAL 163 (348)
Q Consensus 85 ~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~ 163 (348)
+ ..+++ |+.+.+.++. +..++.......+|+.+.+.. .+..++. .+..|++|+.+.+.+ .++.+
T Consensus 176 F---------~~c~~-L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I 240 (401)
T 4fdw_A 176 F---------YYCYN-LKKADLSKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTI 240 (401)
T ss_dssp T---------TTCTT-CCEEECTTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEE
T ss_pred h---------hCccc-CCeeecCCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCc
Confidence 3 23344 6666666443 455544333456777777753 2555554 334566777777765 24555
Q ss_pred cc-cccCCCCcceeEeccCCCCCccc-ccCCCCCCcCeeeecCCccc----hhhhhccccccCCCCCccEEEecccCCcc
Q 039944 164 PK-GMHNLTSLQYLRIGKGGALPSLE-EEDGLPTNLQSLDIWGNMEI----WKSMIERGRGFHRFSSLRRLTISRCDEDM 237 (348)
Q Consensus 164 ~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l----~~~~~~~~~~~~~l~~L~~L~l~~~c~~l 237 (348)
+. .+.+ .+|+.+.+.. .+..++ ..+..+++|+.+++.++... ..+.. ..|.++++|+.+.+.+ ++
T Consensus 241 ~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~---~aF~~c~~L~~l~l~~---~i 311 (401)
T 4fdw_A 241 GQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP---YCLEGCPKLARFEIPE---SI 311 (401)
T ss_dssp CTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT---TTTTTCTTCCEECCCT---TC
T ss_pred ccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECH---HHhhCCccCCeEEeCC---ce
Confidence 43 2333 5677777743 344443 24556777777777663221 11222 3567777888887775 35
Q ss_pred cccccchhccCCCCCCCCCccEEEeccCCCcccccc-ccccCCCcceEeccCCCCCCCCCCCC---CCCCCcEEEEcCCc
Q 039944 238 VSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGCPKLKYFPEKG---LPSSLLELRISRCP 313 (348)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~c~ 313 (348)
..++. .++..+++|+.+.+.. .++.+.. .+.++ +|+.+++.++ .+..++... ++.+++.|++....
T Consensus 312 ~~I~~------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 312 RILGQ------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEECT------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEEhh------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence 55544 2345667888888864 4666655 67777 8888888874 455555432 24577888887643
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.10 E-value=7.9e-11 Score=92.19 Aligned_cols=101 Identities=23% Similarity=0.227 Sum_probs=46.3
Q ss_pred ccEEEEcCCCCc-ccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEec
Q 039944 101 LKSLFVYGCSKL-GSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIG 179 (348)
Q Consensus 101 L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~ 179 (348)
++.|++++|... ..++..+..+++|+.|++++| .+..+ ..+..+++|+.|++++|.....+|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 555555555422 134444445555555555553 33333 334444555555555543222244333445555555555
Q ss_pred cCCCCCccc--ccCCCCCCcCeeeecC
Q 039944 180 KGGALPSLE--EEDGLPTNLQSLDIWG 204 (348)
Q Consensus 180 ~~~~~~~~~--~~~~~~~~L~~L~l~~ 204 (348)
+| .+..++ ..++.+++|+.|++++
T Consensus 97 ~N-~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 97 GN-KIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp TS-CCCSHHHHGGGGGCTTCCEEECTT
T ss_pred CC-cCCChHHHHHHhhCCCCCEEeCcC
Confidence 54 233322 2344444455555544
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.09 E-value=1.9e-10 Score=89.96 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=61.1
Q ss_pred CccEEEEecCCCcC--cccccccCCCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchh-hhhccccccCCCCC
Q 039944 148 KLTRLTILDCKRLE--ALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWK-SMIERGRGFHRFSS 224 (348)
Q Consensus 148 ~L~~L~l~~~~~l~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~ 224 (348)
+++.|++++|. +. .+|..+..+++|++|++++| .+..+ ..++.+++|+.|+++++. +.. .+ ..+..+++
T Consensus 18 ~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~----~~~~~l~~ 89 (149)
T 2je0_A 18 DVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLE----VLAEKCPN 89 (149)
T ss_dssp GCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTH----HHHHHCTT
T ss_pred cCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHH----HHhhhCCC
Confidence 45555555543 22 44444455555555555554 33333 244555555555555533 222 22 12334566
Q ss_pred ccEEEecccCCcccccc--cchhccCCCCCCCCCccEEEeccCCCcccccc----ccccCCCcceEecc
Q 039944 225 LRRLTISRCDEDMVSFP--LEDKRLGTALPLPASLTSLWIEAFPNLERLSS----SIVDLQNLTELYLF 287 (348)
Q Consensus 225 L~~L~l~~~c~~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~----~~~~~~~L~~L~l~ 287 (348)
|+.|++++ +.+..++ ... ..+++|++|++++| .++.++. .+..+++|+.|+++
T Consensus 90 L~~L~ls~--N~i~~~~~~~~~-------~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSG--NKIKDLSTIEPL-------KKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTT--SCCCSHHHHGGG-------GGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCC--CcCCChHHHHHH-------hhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 66666665 3444432 222 24556666666663 4554443 45566666666654
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=2.1e-09 Score=95.66 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=79.1
Q ss_pred CCCCcceeEeccCCCCCcccc-cCCCCCCcCeeeecCCccchhhhhccccccCCCCCcc-EEEecccCCcccccccchhc
Q 039944 169 NLTSLQYLRIGKGGALPSLEE-EDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLR-RLTISRCDEDMVSFPLEDKR 246 (348)
Q Consensus 169 ~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~-~L~l~~~c~~l~~~~~~~~~ 246 (348)
.+++|+.+++.++ .+..++. .+..+++|+.+++.++ +..+.. ..|.++.+|+ .+++.+ .++.++.
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~---~aF~~~~~L~~~l~l~~---~l~~I~~---- 290 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ---RVFSNCGRLAGTLELPA---SVTAIEF---- 290 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT---TTTTTCTTCCEEEEECT---TCCEECT----
T ss_pred hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehH---HHhhCChhccEEEEEcc---cceEEch----
Confidence 3789999999976 4666664 4677899999999885 555554 3789999999 999986 4556554
Q ss_pred cCCCCCCCCCccEEEeccCCCcccccc-ccccCCCcceEec
Q 039944 247 LGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTELYL 286 (348)
Q Consensus 247 ~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l 286 (348)
.++..+++|+.+++.. +.++.++. .|.++++|+.++.
T Consensus 291 --~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 --GAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp --TTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred --hhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 3457888999999977 57888877 7888999998864
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.04 E-value=3.1e-08 Score=90.36 Aligned_cols=238 Identities=10% Similarity=0.100 Sum_probs=166.2
Q ss_pred CCCCCcccEEeecCcccccccCCCCC-CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccc
Q 039944 2 CDTNSSLEILDIEKCHSLTYIAAVQL-PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIF 80 (348)
Q Consensus 2 ~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 80 (348)
|..+ +|+.+.+.. +++.++...| -.+|+.+.+.. .++.++.. .|..+. +|+.+++.+ +.++. +
T Consensus 132 F~~~-~L~~i~l~~--~i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~-------aF~~c~--~L~~l~l~~-n~l~~-I 195 (401)
T 4fdw_A 132 FRNS-QIAKVVLNE--GLKSIGDMAFFNSTVQEIVFPS--TLEQLKED-------IFYYCY--NLKKADLSK-TKITK-L 195 (401)
T ss_dssp TTTC-CCSEEECCT--TCCEECTTTTTTCCCCEEECCT--TCCEECSS-------TTTTCT--TCCEEECTT-SCCSE-E
T ss_pred cccC-CccEEEeCC--CccEECHHhcCCCCceEEEeCC--CccEehHH-------HhhCcc--cCCeeecCC-CcceE-e
Confidence 4454 799999874 5888887766 45799999987 57888877 688888 999999976 35666 6
Q ss_pred cCCCCCCCcceeEeccCCCCccEEEEcCCCCcccch-hhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCC
Q 039944 81 SKNELPATLESLEVGNLPLSLKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKR 159 (348)
Q Consensus 81 ~~~~~~~~L~~L~i~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 159 (348)
+...+. ... |+.+.+... +..++ ..+..+++|+.+.+.. .+..++.....-.+|+.+.+.. .
T Consensus 196 ~~~aF~----------~~~-L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~ 258 (401)
T 4fdw_A 196 PASTFV----------YAG-IEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--G 258 (401)
T ss_dssp CTTTTT----------TCC-CSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--T
T ss_pred chhhEe----------ecc-cCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCC--C
Confidence 665441 133 777777532 55553 5677889999999976 3666666554447899999954 4
Q ss_pred cCccc-ccccCCCCcceeEeccCCCC----Cccc-ccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEeccc
Q 039944 160 LEALP-KGMHNLTSLQYLRIGKGGAL----PSLE-EEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 233 (348)
Q Consensus 160 l~~~~-~~l~~l~~L~~L~l~~~~~~----~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 233 (348)
++.++ ..+.++++|+.+.+.++... ..++ ..+..+++|+.+.+.. .+..+.. ..|.++++|+.+.+..
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~---~aF~~c~~L~~l~lp~- 332 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ---GLLGGNRKVTQLTIPA- 332 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECT---TTTTTCCSCCEEEECT-
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhh---hhhcCCCCccEEEECc-
Confidence 66665 36688999999999865221 1232 2467788999999985 3555544 3688899999999976
Q ss_pred CCcccccccchhccCCCCCCCCCccEEEeccCCCcccccc-ccccCC-CcceEeccC
Q 039944 234 DEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQ-NLTELYLFG 288 (348)
Q Consensus 234 c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~-~L~~L~l~~ 288 (348)
++..+.. .++..+ +|+.+.+.++ .+..++. .+..++ +++.|.+-.
T Consensus 333 --~l~~I~~------~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 333 --NVTQINF------SAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp --TCCEECT------TSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred --cccEEcH------HhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 3555544 234567 8999999884 4554444 456664 677777754
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.01 E-value=6.3e-10 Score=89.63 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=61.8
Q ss_pred CCCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCC
Q 039944 170 LTSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGT 249 (348)
Q Consensus 170 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~ 249 (348)
+++|++|++++| .+..++......++|+.|+++++ .+..+. .+..+++|+.|++++ +.+..++...
T Consensus 18 ~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~-----~l~~l~~L~~L~Ls~--N~l~~~~~~~----- 83 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKLD-----GFPLLRRLKTLLVNN--NRICRIGEGL----- 83 (176)
T ss_dssp TTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEEC-----CCCCCSSCCEEECCS--SCCCEECSCH-----
T ss_pred cCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCccc-----ccccCCCCCEEECCC--CcccccCcch-----
Confidence 444444444443 23333311122225555555553 233221 344555666666665 3444444321
Q ss_pred CCCCCCCccEEEeccCCCcccccc--ccccCCCcceEeccCCCCCCCCCCC-----CCCCCCcEEEEcCCch
Q 039944 250 ALPLPASLTSLWIEAFPNLERLSS--SIVDLQNLTELYLFGCPKLKYFPEK-----GLPSSLLELRISRCPL 314 (348)
Q Consensus 250 ~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~c~~ 314 (348)
+..+++|++|++++ +.++.+|. .+..+++|+.|++++| .+..+|.. ...++|+.|+++++..
T Consensus 84 -~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 84 -DQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp -HHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred -hhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 01345566666665 34555554 5556666666666664 34444441 1156667776666653
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.01 E-value=1.2e-10 Score=114.51 Aligned_cols=109 Identities=19% Similarity=0.256 Sum_probs=54.2
Q ss_pred hhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcccccCCCCC
Q 039944 116 AERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLEEEDGLPT 195 (348)
Q Consensus 116 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 195 (348)
+..+..+++|+.|++++| .+..+|..++.+++|+.|++++| .+..+|..+..+++|++|++++| .+..+|..++.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 344455555555555553 33345554445555555555553 34455555555555555555554 3445554455555
Q ss_pred CcCeeeecCCccchhhhhccccccCCCCCccEEEecc
Q 039944 196 NLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 196 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 232 (348)
+|+.|++++| .+..++ ..+..+++|+.|++++
T Consensus 294 ~L~~L~L~~N-~l~~lp----~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 294 QLKYFYFFDN-MVTTLP----WEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TCSEEECCSS-CCCCCC----SSTTSCTTCCCEECTT
T ss_pred CCCEEECCCC-CCCccC----hhhhcCCCccEEeCCC
Confidence 5555555553 333333 2345555555555555
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.98 E-value=3.9e-09 Score=86.32 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=77.7
Q ss_pred ceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCccc-ccCCCCCCcCeeeecC
Q 039944 126 ETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLE-EEDGLPTNLQSLDIWG 204 (348)
Q Consensus 126 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~ 204 (348)
+.+++++ +.+..+|..+. ++|+.|++++| .++.+|..+..+++|++|++++| .+..++ ..+..+++|+.|++++
T Consensus 13 ~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCC-CCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence 4566665 45667776553 47888888774 46677777777788888888776 444444 2356677777777777
Q ss_pred CccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccC
Q 039944 205 NMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAF 265 (348)
Q Consensus 205 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 265 (348)
+ .+..++.. .+..+++|+.|++++ +.+..++... +..+++|+.|+++++
T Consensus 88 N-~l~~i~~~---~f~~l~~L~~L~L~~--N~l~~~~~~~------~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 88 N-RLRCIPPR---TFDGLKSLRLLSLHG--NDISVVPEGA------FNDLSALSHLAIGAN 136 (193)
T ss_dssp S-CCCBCCTT---TTTTCTTCCEEECCS--SCCCBCCTTT------TTTCTTCCEEECCSS
T ss_pred C-ccCEeCHH---HhCCCCCCCEEECCC--CCCCeeChhh------hhcCccccEEEeCCC
Confidence 4 34444432 456677777777776 5566555531 234566777777663
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.97 E-value=6.2e-09 Score=85.12 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=59.5
Q ss_pred cEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCccc-ccccCCCCcceeEecc
Q 039944 102 KSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALP-KGMHNLTSLQYLRIGK 180 (348)
Q Consensus 102 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~ 180 (348)
+.++++++. +..+|..+ .++++.|++++ +.+..+|..+..+++|+.|++++|. +..++ ..+..+++|++|++++
T Consensus 13 ~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGI--PRDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSC-CSSCCSCC--CTTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCC-CCcCCCCC--CCCCCEEECCC-CcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCC
Confidence 344444433 44444332 24556666655 3444555445555566666665533 33333 2345556666666665
Q ss_pred CCCCCcccc-cCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecc
Q 039944 181 GGALPSLEE-EDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 181 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 232 (348)
| .+..++. .+..+++|+.|+++++ .+..++.. .+..+++|+.|++++
T Consensus 88 N-~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 88 N-RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEG---AFNDLSALSHLAIGA 135 (193)
T ss_dssp S-CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTT---TTTTCTTCCEEECCS
T ss_pred C-ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChh---hhhcCccccEEEeCC
Confidence 4 3333332 3445556666666553 33333321 344555666666655
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.96 E-value=9.8e-10 Score=88.50 Aligned_cols=129 Identities=13% Similarity=0.099 Sum_probs=101.3
Q ss_pred CCCCCccEEEEecCCCcCcccccccCC-CCcceeEeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCC
Q 039944 144 LPCAKLTRLTILDCKRLEALPKGMHNL-TSLQYLRIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRF 222 (348)
Q Consensus 144 ~~~~~L~~L~l~~~~~l~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 222 (348)
..+.+|+.|++++| .++.++. +..+ ++|++|++++| .+..++ .++.+++|+.|+++++ .+..++.. .+..+
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~-~l~~l~~L~~L~Ls~N-~l~~~~~~---~~~~l 87 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNN-RICRIGEG---LDQAL 87 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSS-CCCEECSC---HHHHC
T ss_pred CCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCC-CCCccc-ccccCCCCCEEECCCC-cccccCcc---hhhcC
Confidence 45679999999996 5667754 4444 59999999997 566774 7888999999999995 46655532 34788
Q ss_pred CCccEEEecccCCccccccc--chhccCCCCCCCCCccEEEeccCCCccccccc----cccCCCcceEeccCCC
Q 039944 223 SSLRRLTISRCDEDMVSFPL--EDKRLGTALPLPASLTSLWIEAFPNLERLSSS----IVDLQNLTELYLFGCP 290 (348)
Q Consensus 223 ~~L~~L~l~~~c~~l~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~----~~~~~~L~~L~l~~c~ 290 (348)
++|+.|++++ +.+..++. .. ..+++|+.|+++++ .+..+|.. +..+++|+.|+++++.
T Consensus 88 ~~L~~L~L~~--N~i~~~~~~~~l-------~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 88 PDLTELILTN--NSLVELGDLDPL-------ASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCS--CCCCCGGGGGGG-------GGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCEEECCC--CcCCcchhhHhh-------hcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999998 57777775 33 46789999999994 67777774 8899999999999864
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.94 E-value=1.1e-09 Score=107.75 Aligned_cols=190 Identities=15% Similarity=0.101 Sum_probs=99.7
Q ss_pred ccEEEEcCCCCcccchhhhcCCCccceeccccc----ccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCccee
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNTSLETISIDSC----GNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYL 176 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~----~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L 176 (348)
++.|.+.++. +...+..+.....|..+.+... +.+...+..+..+++|+.|++++|. +..+|..+..+++|++|
T Consensus 175 ~~~l~L~~n~-~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 175 TPKIELFANG-KDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRL 252 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCC
T ss_pred cceEEeeCCC-CCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEE
Confidence 6777776554 3334433333444444444321 2333345566678889999999864 66788888889999999
Q ss_pred EeccCCCCCcccccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCC
Q 039944 177 RIGKGGALPSLEEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPAS 256 (348)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~ 256 (348)
++++| .+..+|..++.+++|+.|++++|. +..++ ..+..+++|+.|++++ +.+..+|..+ ..+++
T Consensus 253 ~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp----~~~~~l~~L~~L~L~~--N~l~~lp~~~-------~~l~~ 317 (727)
T 4b8c_D 253 YLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLP----AELGSCFQLKYFYFFD--NMVTTLPWEF-------GNLCN 317 (727)
T ss_dssp BCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCC----SSGGGGTTCSEEECCS--SCCCCCCSST-------TSCTT
T ss_pred EeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccC----hhhcCCCCCCEEECCC--CCCCccChhh-------hcCCC
Confidence 99987 566888778889999999999854 55665 3577889999999998 5777888765 57788
Q ss_pred ccEEEeccCCCccccccccccCCC-cceEeccCCCCCCCCCCCCCCCCCcEEEEcCC
Q 039944 257 LTSLWIEAFPNLERLSSSIVDLQN-LTELYLFGCPKLKYFPEKGLPSSLLELRISRC 312 (348)
Q Consensus 257 L~~L~l~~~~~l~~i~~~~~~~~~-L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 312 (348)
|+.|+++++.....+|..+..... +..+++.++. +. ..++..|+.|+++.+
T Consensus 318 L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~-l~----~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 318 LQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNR-PE----IPLPHERRFIEINTD 369 (727)
T ss_dssp CCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCC-CC----CCCCCC---------
T ss_pred ccEEeCCCCccCCCChHHHhhcchhhhHHhhccCc-cc----CcCccccceeEeecc
Confidence 999999985433455554433221 2235666642 22 123567777777765
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.92 E-value=6.9e-09 Score=84.77 Aligned_cols=123 Identities=20% Similarity=0.195 Sum_probs=79.7
Q ss_pred ceecccccccccccCCCCCCCCCccEEEEecCCCcCccccc--ccCCCCcceeEeccCCCCCcc-cccCCCCCCcCeeee
Q 039944 126 ETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKG--MHNLTSLQYLRIGKGGALPSL-EEEDGLPTNLQSLDI 202 (348)
Q Consensus 126 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 202 (348)
+.+++++ +.+..+|..+.. +++.|++++| .+..++.. +..+++|++|++++| .+..+ |..+..+++|+.|++
T Consensus 11 ~~l~~s~-~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTT-SCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCC-CCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEEC
Confidence 5677776 566777776544 7888888885 45656542 677888888888876 44444 445667778888888
Q ss_pred cCCccchhhhhccccccCCCCCccEEEecccCCccccccc-chhccCCCCCCCCCccEEEeccCC
Q 039944 203 WGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPL-EDKRLGTALPLPASLTSLWIEAFP 266 (348)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~ 266 (348)
+++ .+...+. ..+..+++|+.|++++ +.+..++. .. ..+++|++|++++++
T Consensus 86 s~N-~l~~~~~---~~~~~l~~L~~L~L~~--N~l~~~~~~~~-------~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 86 GEN-KIKEISN---KMFLGLHQLKTLNLYD--NQISCVMPGSF-------EHLNSLTSLNLASNP 137 (192)
T ss_dssp CSC-CCCEECS---SSSTTCTTCCEEECCS--SCCCEECTTSS-------TTCTTCCEEECTTCC
T ss_pred CCC-cCCccCH---HHhcCCCCCCEEECCC--CcCCeeCHHHh-------hcCCCCCEEEeCCCC
Confidence 774 3444443 2466777777777777 45554432 22 456677777777743
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.88 E-value=1.7e-08 Score=81.17 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=55.2
Q ss_pred cEEeecCcccccccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCC
Q 039944 9 EILDIEKCHSLTYIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPAT 88 (348)
Q Consensus 9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 88 (348)
+.+++++ ++++.+|. ..+++|++|+++++. +..++.. .+..++ +|++|+++++ .+.. ++...+
T Consensus 10 ~~l~~~~-~~l~~~p~-~~~~~l~~L~l~~n~-l~~~~~~-------~~~~l~--~L~~L~l~~n-~l~~-~~~~~~--- 72 (177)
T 2o6r_A 10 TEIRCNS-KGLTSVPT-GIPSSATRLELESNK-LQSLPHG-------VFDKLT--QLTKLSLSQN-QIQS-LPDGVF--- 72 (177)
T ss_dssp TEEECCS-SCCSSCCT-TCCTTCSEEECCSSC-CCCCCTT-------TTTTCT--TCSEEECCSS-CCCC-CCTTTT---
T ss_pred CEEEecC-CCCccCCC-CCCCCCcEEEeCCCc-ccEeCHH-------HhcCcc--cccEEECCCC-cceE-eChhHc---
Confidence 4555554 34555542 234566666666655 5555544 344444 5666666553 3333 332211
Q ss_pred cceeEeccCCCCccEEEEcCCCCcccch-hhhcCCCccceecccccccccccCCCC-CCCCCccEEEEecC
Q 039944 89 LESLEVGNLPLSLKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSCGNLVSFPEGG-LPCAKLTRLTILDC 157 (348)
Q Consensus 89 L~~L~i~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~ 157 (348)
..++. |+.|++++|. +..++ ..+..+++|++|++++| .+..+|... ..+++|+.|++++|
T Consensus 73 ------~~l~~-L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 73 ------DKLTK-LTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp ------TTCTT-CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ------cCCCc-cCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 11233 5555555443 22222 22344455555555442 333333322 23444444444443
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.88 E-value=1.3e-08 Score=83.03 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=34.3
Q ss_pred hcCCCccceeccccccccccc-CCCCCCCCCccEEEEecCCCcCcccc-cccCCCCcceeEeccCCCCCcc-cccCCCCC
Q 039944 119 LDNNTSLETISIDSCGNLVSF-PEGGLPCAKLTRLTILDCKRLEALPK-GMHNLTSLQYLRIGKGGALPSL-EEEDGLPT 195 (348)
Q Consensus 119 ~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~ 195 (348)
+..+++|++|++++| .+..+ |..+..+++|+.|++++|. +..+++ .+..+++|++|++++| .+..+ |..+..++
T Consensus 50 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 50 FGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLN 126 (192)
T ss_dssp GGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCT
T ss_pred cccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCC
Confidence 444455555555442 22222 3334444455555554432 232222 2344445555555444 22222 22333444
Q ss_pred CcCeeeecC
Q 039944 196 NLQSLDIWG 204 (348)
Q Consensus 196 ~L~~L~l~~ 204 (348)
+|+.|++++
T Consensus 127 ~L~~L~L~~ 135 (192)
T 1w8a_A 127 SLTSLNLAS 135 (192)
T ss_dssp TCCEEECTT
T ss_pred CCCEEEeCC
Confidence 444444444
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.83 E-value=8e-07 Score=80.91 Aligned_cols=265 Identities=13% Similarity=0.097 Sum_probs=139.5
Q ss_pred CCCCCcccEEeecCcccccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCcccc
Q 039944 2 CDTNSSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCI 79 (348)
Q Consensus 2 ~~~~~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 79 (348)
|..|.+|+.+.+. +.++.++...| +.+|+.+.+..+ ++.++.. .|..+. +|+.+.+.. .+..
T Consensus 67 F~~c~~L~~i~lp--~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-------aF~~c~--~L~~i~~p~--~l~~- 130 (394)
T 4fs7_A 67 FQGCRKVTEIKIP--STVREIGEFAFENCSKLEIINIPDS--VKMIGRC-------TFSGCY--ALKSILLPL--MLKS- 130 (394)
T ss_dssp TTTCTTEEEEECC--TTCCEECTTTTTTCTTCCEECCCTT--CCEECTT-------TTTTCT--TCCCCCCCT--TCCE-
T ss_pred hhCCCCceEEEeC--CCccCcchhHhhCCCCCcEEEeCCC--ceEccch-------hhcccc--cchhhcccC--ceee-
Confidence 5677888888885 35777777666 778888888653 5666665 344444 555544432 1111
Q ss_pred ccCCCCC----------CCcceeEe---ccCCCCccEEEEcCCCCcccch-hhhcCCCccceecccccccccccCC----
Q 039944 80 FSKNELP----------ATLESLEV---GNLPLSLKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSCGNLVSFPE---- 141 (348)
Q Consensus 80 ~~~~~~~----------~~L~~L~i---~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~---- 141 (348)
+....+. .....+.- ..+.+ |+.+.+.+. +..+. ..+..+.+|+.+.+..+ +..++.
T Consensus 131 i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~-L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~ 205 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGVTVIGDEAFATCES-LEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFA 205 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTCCEECTTTTTTCTT-CCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTT
T ss_pred ecceeeecccccccccCccccccchhhhcccCC-CcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhc
Confidence 1111110 00100000 12233 555555322 22222 33444555665555431 222221
Q ss_pred -------------------CCCCCCCccEEEEecCCCcCcccc-cccCCCCcceeEeccCCCCCccc-ccCCCCCCcCee
Q 039944 142 -------------------GGLPCAKLTRLTILDCKRLEALPK-GMHNLTSLQYLRIGKGGALPSLE-EEDGLPTNLQSL 200 (348)
Q Consensus 142 -------------------~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L 200 (348)
......+|+.+.+... +..+.. .+..++.|+.+.+... ...+. ..+..+..++.+
T Consensus 206 ~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~ 281 (394)
T 4fs7_A 206 ECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKV 281 (394)
T ss_dssp TCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEE
T ss_pred cccccceeecCCCceEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCC--cceeecccccccccccee
Confidence 1222334555554331 222221 3345556666655532 12221 123445556655
Q ss_pred eecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccccc-ccccCC
Q 039944 201 DIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQ 279 (348)
Q Consensus 201 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~ 279 (348)
..... .+.. ..+..+.+|+.+.+.+ ++..+.. .++..+.+|+.+.+.. .++.+.. .+.+|+
T Consensus 282 ~~~~~-~i~~------~~F~~~~~L~~i~l~~---~i~~I~~------~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 282 IYGSV-IVPE------KTFYGCSSLTEVKLLD---SVKFIGE------EAFESCTSLVSIDLPY--LVEEIGKRSFRGCT 343 (394)
T ss_dssp EECSS-EECT------TTTTTCTTCCEEEECT---TCCEECT------TTTTTCTTCCEECCCT--TCCEECTTTTTTCT
T ss_pred ccCce-eecc------cccccccccccccccc---ccceech------hhhcCCCCCCEEEeCC--cccEEhHHhccCCC
Confidence 55442 1111 2456777888887765 3444443 2356778899998864 4677765 678899
Q ss_pred CcceEeccCCCCCCCCCCCCC--CCCCcEEEEcC
Q 039944 280 NLTELYLFGCPKLKYFPEKGL--PSSLLELRISR 311 (348)
Q Consensus 280 ~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~ 311 (348)
+|+.+++.. .++.++...+ +.+|+.+++..
T Consensus 344 ~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 344 SLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 999998865 4777776555 67899998864
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.82 E-value=3.2e-11 Score=99.31 Aligned_cols=99 Identities=13% Similarity=0.101 Sum_probs=50.7
Q ss_pred ccEEEEcCC-CCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEec
Q 039944 101 LKSLFVYGC-SKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIG 179 (348)
Q Consensus 101 L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~ 179 (348)
++...+.+. ..++.++..+..+++|++|++++| .+..+| .+..+++|+.|++++| .+..+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence 444455432 124444545666666666666653 344454 4444556666666664 344555444445556666665
Q ss_pred cCCCCCcccccCCCCCCcCeeeecC
Q 039944 180 KGGALPSLEEEDGLPTNLQSLDIWG 204 (348)
Q Consensus 180 ~~~~~~~~~~~~~~~~~L~~L~l~~ 204 (348)
+| .+..++ .+..+++|+.|++++
T Consensus 102 ~N-~l~~l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 102 YN-QIASLS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp EE-ECCCHH-HHHHHHHSSEEEESE
T ss_pred CC-cCCcCC-ccccCCCCCEEECCC
Confidence 54 334443 334444555555544
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.81 E-value=4.8e-08 Score=78.48 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=34.6
Q ss_pred CccEEEEecCCCcCcccc-cccCCCCcceeEeccCCCCCccccc-CCCCCCcCeeeecCCccchhhhhccccccCCCCCc
Q 039944 148 KLTRLTILDCKRLEALPK-GMHNLTSLQYLRIGKGGALPSLEEE-DGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSL 225 (348)
Q Consensus 148 ~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L 225 (348)
+|+.|+++++. +..++. .+..+++|++|+++++ .+..++.. ++.+++|+.|+++++ .++..+.. .+..+++|
T Consensus 29 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~---~~~~l~~L 102 (177)
T 2o6r_A 29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNG---VFDKLTQL 102 (177)
T ss_dssp TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTC
T ss_pred CCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHH---HhhCCccc
Confidence 55555555532 333332 2344555555555544 33333321 344455555555542 23332211 23444555
Q ss_pred cEEEecc
Q 039944 226 RRLTISR 232 (348)
Q Consensus 226 ~~L~l~~ 232 (348)
+.|++++
T Consensus 103 ~~L~l~~ 109 (177)
T 2o6r_A 103 KELALDT 109 (177)
T ss_dssp CEEECCS
T ss_pred CEEECcC
Confidence 5555554
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.72 E-value=3.3e-10 Score=93.16 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=45.0
Q ss_pred ccEEEEcCCCCcccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccccCCCCcceeEecc
Q 039944 101 LKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRIGK 180 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~ 180 (348)
|+.|++++|. +..++ .+..+++|+.|++++| .+..+|.....+++|+.|++++| .+..+| .+..+++|++|++++
T Consensus 50 L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 50 CKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp CSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESE
T ss_pred CCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCC
Confidence 5555555443 33343 4444555555555552 33344443333345555555553 333343 344455555555554
Q ss_pred CCCCCcccc--cCCCCCCcCeeeecC
Q 039944 181 GGALPSLEE--EDGLPTNLQSLDIWG 204 (348)
Q Consensus 181 ~~~~~~~~~--~~~~~~~L~~L~l~~ 204 (348)
| .+..++. .+..+++|+.|++.+
T Consensus 125 N-~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 125 N-KITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp E-ECCCHHHHHHHTTTTTCSEEEECS
T ss_pred C-cCCchhHHHHHhcCCCCCEEEecC
Confidence 4 2333221 234444555555544
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.65 E-value=1.2e-05 Score=72.98 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=66.7
Q ss_pred CCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcccc
Q 039944 192 GLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLERL 271 (348)
Q Consensus 192 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 271 (348)
..+.+|+.+.+.... ..+.. ..+.++++|+.+.+.. .+..++. .++..+.+|+.+.+.. .++.+
T Consensus 262 ~~c~~L~~i~lp~~~--~~I~~---~aF~~c~~L~~i~l~~---~i~~I~~------~aF~~c~~L~~i~lp~--~v~~I 325 (394)
T 4gt6_A 262 DSCAYLASVKMPDSV--VSIGT---GAFMNCPALQDIEFSS---RITELPE------SVFAGCISLKSIDIPE--GITQI 325 (394)
T ss_dssp TTCSSCCEEECCTTC--CEECT---TTTTTCTTCCEEECCT---TCCEECT------TTTTTCTTCCEEECCT--TCCEE
T ss_pred eecccccEEeccccc--ceecC---cccccccccccccCCC---cccccCc------eeecCCCCcCEEEeCC--cccEe
Confidence 445566666664421 11221 3456667777777754 3444444 2456677888888864 46666
Q ss_pred cc-ccccCCCcceEeccCCCCCCCCCCCCC--CCCCcEEEEcCCc
Q 039944 272 SS-SIVDLQNLTELYLFGCPKLKYFPEKGL--PSSLLELRISRCP 313 (348)
Q Consensus 272 ~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 313 (348)
.. .+.+|++|+.+.+.. .++.++...+ +.+|+.+++.+..
T Consensus 326 ~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred hHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 55 678889999998864 4677766444 6889999988764
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.56 E-value=3.9e-07 Score=73.02 Aligned_cols=83 Identities=23% Similarity=0.288 Sum_probs=36.8
Q ss_pred cEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcc-cccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEE
Q 039944 150 TRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSL-EEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRL 228 (348)
Q Consensus 150 ~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 228 (348)
+.+++++ ..+..+|..+ .++|++|+++++ .+..+ +..++.+++|+.|+++++ .+..++.. .+..+++|+.|
T Consensus 15 ~~l~~~~-n~l~~iP~~~--~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~---~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGI--PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTG---VFDKLTQLTQL 86 (174)
T ss_dssp SEEECCS-SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEE
T ss_pred cEEEeCC-CCCCccCCCc--CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChh---HhCCcchhhEE
Confidence 3455544 2345555433 245555555554 23333 223444555555555552 33333321 23444555555
Q ss_pred EecccCCccccccc
Q 039944 229 TISRCDEDMVSFPL 242 (348)
Q Consensus 229 ~l~~~c~~l~~~~~ 242 (348)
++++ +.+..++.
T Consensus 87 ~L~~--N~l~~l~~ 98 (174)
T 2r9u_A 87 DLND--NHLKSIPR 98 (174)
T ss_dssp ECCS--SCCCCCCT
T ss_pred ECCC--CccceeCH
Confidence 5554 34444433
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.55 E-value=4.4e-07 Score=72.38 Aligned_cols=100 Identities=23% Similarity=0.297 Sum_probs=48.9
Q ss_pred ccEEEEecCCCcCcccccccCCCCcceeEeccCCCCCcc-cccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccE
Q 039944 149 LTRLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSL-EEEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRR 227 (348)
Q Consensus 149 L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 227 (348)
.+.+++++ ..++.+|..+ .++|++|+++++ .+..+ +..+..+++|+.|+++++ .++.++.. .+..+++|+.
T Consensus 11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~---~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAG---VFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTT-SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT---TTTTCTTCCE
T ss_pred CCEEEeCC-CCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChh---hccCCCCCCE
Confidence 44555555 3455555443 255666666654 33333 323455555666666553 34443321 3445555555
Q ss_pred EEecccCCcccccccchhccCCCCCCCCCccEEEecc
Q 039944 228 LTISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEA 264 (348)
Q Consensus 228 L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 264 (348)
|++++ +.+..++... +..+++|+.|++++
T Consensus 83 L~L~~--N~l~~~~~~~------~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 83 LSLND--NQLKSIPRGA------FDNLKSLTHIWLLN 111 (170)
T ss_dssp EECCS--SCCCCCCTTT------TTTCTTCCEEECCS
T ss_pred EECCC--CccCEeCHHH------hcCCCCCCEEEeCC
Confidence 55555 3444444321 12445555555555
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.53 E-value=5.4e-07 Score=72.17 Aligned_cols=98 Identities=21% Similarity=0.252 Sum_probs=51.3
Q ss_pred ceecccccccccccCCCCCCCCCccEEEEecCCCcCcc-cccccCCCCcceeEeccCCCCCccccc-CCCCCCcCeeeec
Q 039944 126 ETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEAL-PKGMHNLTSLQYLRIGKGGALPSLEEE-DGLPTNLQSLDIW 203 (348)
Q Consensus 126 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~ 203 (348)
+.+++++ +.+..+|..+. ++|+.|++++|. +..+ |..+..+++|++|++++| .+..++.. +..+++|+.|+++
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCC-CCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 3445544 34455555443 356666666543 3333 334555666666666655 44455432 3456666666666
Q ss_pred CCccchhhhhccccccCCCCCccEEEecc
Q 039944 204 GNMEIWKSMIERGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 204 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 232 (348)
++ .+..++.. .+..+++|+.|++++
T Consensus 90 ~N-~l~~l~~~---~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 90 DN-HLKSIPRG---AFDNLKSLTHIYLYN 114 (174)
T ss_dssp SS-CCCCCCTT---TTTTCTTCSEEECCS
T ss_pred CC-ccceeCHH---HhccccCCCEEEeCC
Confidence 63 34444321 355566666666665
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.46 E-value=1.1e-06 Score=70.05 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=50.2
Q ss_pred ceecccccccccccCCCCCCCCCccEEEEecCCCcCcc-cccccCCCCcceeEeccCCCCCccccc-CCCCCCcCeeeec
Q 039944 126 ETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEAL-PKGMHNLTSLQYLRIGKGGALPSLEEE-DGLPTNLQSLDIW 203 (348)
Q Consensus 126 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~ 203 (348)
+.+++++ +.+..+|..+. ++|+.|++++| .++.+ |..+..+++|++|++++| .+..++.. +..+++|+.|+++
T Consensus 12 ~~l~~s~-n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSG-KSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCC-CCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 4455554 34445554442 35666666553 23333 334555666666666654 34444432 3455666666666
Q ss_pred CCccchhhhhccccccCCCCCccEEEecc
Q 039944 204 GNMEIWKSMIERGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 204 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 232 (348)
++ .+..++.. .+..+++|+.|++++
T Consensus 87 ~N-~l~~~~~~---~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 87 DN-QLKSIPRG---AFDNLKSLTHIWLLN 111 (170)
T ss_dssp SS-CCCCCCTT---TTTTCTTCCEEECCS
T ss_pred CC-ccCEeCHH---HhcCCCCCCEEEeCC
Confidence 53 34443321 355566666666665
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.46 E-value=1.8e-05 Score=71.91 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=74.8
Q ss_pred cccCCCCcceeEeccCCCCCccc-ccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccch
Q 039944 166 GMHNLTSLQYLRIGKGGALPSLE-EEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLED 244 (348)
Q Consensus 166 ~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~ 244 (348)
.+..++.|+.+.+... ...+. ..+..+++|+.+.+.. .+..+.. ..|.++.+|+.+.+.+ +++.+..
T Consensus 260 aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~---~aF~~c~~L~~i~lp~---~v~~I~~-- 327 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPE---SVFAGCISLKSIDIPE---GITQILD-- 327 (394)
T ss_dssp TTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECT---TTTTTCTTCCEEECCT---TCCEECT--
T ss_pred eeeecccccEEecccc--cceecCcccccccccccccCCC--cccccCc---eeecCCCCcCEEEeCC---cccEehH--
Confidence 3456777888877542 23332 2356688999998864 3444443 3688899999999986 3555544
Q ss_pred hccCCCCCCCCCccEEEeccCCCcccccc-ccccCCCcceEeccCC
Q 039944 245 KRLGTALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGC 289 (348)
Q Consensus 245 ~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c 289 (348)
.++..+.+|+.+.+.. .++.+.. .+.+|++|+.+++.+.
T Consensus 328 ----~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 328 ----DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp ----TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred ----hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 3456788999999974 4777765 7899999999999873
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.37 E-value=1.8e-05 Score=71.92 Aligned_cols=219 Identities=14% Similarity=0.111 Sum_probs=99.3
Q ss_pred ccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCCCccccccCCCCCCCcceeEecc
Q 039944 19 LTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCPSLTCIFSKNELPATLESLEVGN 96 (348)
Q Consensus 19 l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 96 (348)
+..+....| +.+|+.+.+.+. +..++.. .|..+. +|+.+.+.. .++. ++...+ ..
T Consensus 150 ~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~-------~F~~c~--~L~~i~l~~--~~~~-I~~~~F---------~~ 206 (394)
T 4fs7_A 150 VTVIGDEAFATCESLEYVSLPDS--METLHNG-------LFSGCG--KLKSIKLPR--NLKI-IRDYCF---------AE 206 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT--CCEECTT-------TTTTCT--TCCBCCCCT--TCCE-ECTTTT---------TT
T ss_pred ccccchhhhcccCCCcEEecCCc--cceeccc-------cccCCC--CceEEEcCC--CceE-eCchhh---------cc
Confidence 344444444 678888888653 4566666 566666 777777754 2333 333322 11
Q ss_pred CCCCccEEEEcCCCCcccchhhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCccc-ccccCCCCcc
Q 039944 97 LPLSLKSLFVYGCSKLGSIAERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEALP-KGMHNLTSLQ 174 (348)
Q Consensus 97 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~ 174 (348)
++. |+.+.+... ...+........+|+.+.+.. ....+.. ....+.+++.+.+..+ ...+. ..+..++.++
T Consensus 207 ~~~-L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~ 279 (394)
T 4fs7_A 207 CIL-LENMEFPNS--LYYLGDFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLK 279 (394)
T ss_dssp CTT-CCBCCCCTT--CCEECTTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCC
T ss_pred ccc-cceeecCCC--ceEeehhhcccCCCceEEECC--CceecccccccccccceeEEcCCC--cceeeccccccccccc
Confidence 111 222222211 111112222334455554432 1222222 2233455666655442 22222 2334455555
Q ss_pred eeEeccCCCCCccc-ccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCcccccccchhccCCCCCC
Q 039944 175 YLRIGKGGALPSLE-EEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDEDMVSFPLEDKRLGTALPL 253 (348)
Q Consensus 175 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~ 253 (348)
.+..... .++ ..+..+.+|+.+.+... ++.+.. ..|.++.+|+.+++.+ .++.+.. .++..
T Consensus 280 ~~~~~~~----~i~~~~F~~~~~L~~i~l~~~--i~~I~~---~aF~~c~~L~~i~lp~---~v~~I~~------~aF~~ 341 (394)
T 4fs7_A 280 KVIYGSV----IVPEKTFYGCSSLTEVKLLDS--VKFIGE---EAFESCTSLVSIDLPY---LVEEIGK------RSFRG 341 (394)
T ss_dssp EEEECSS----EECTTTTTTCTTCCEEEECTT--CCEECT---TTTTTCTTCCEECCCT---TCCEECT------TTTTT
T ss_pred eeccCce----eeccccccccccccccccccc--cceech---hhhcCCCCCCEEEeCC---cccEEhH------HhccC
Confidence 5544321 111 12344555666655432 222222 2455566666666653 2333332 23345
Q ss_pred CCCccEEEeccCCCcccccc-ccccCCCcceEecc
Q 039944 254 PASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLF 287 (348)
Q Consensus 254 ~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~ 287 (348)
+.+|+.+.+.. .++.+.. .+.+|++|+.+++.
T Consensus 342 c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 342 CTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 55666666653 2444444 45666666666654
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=9e-07 Score=70.29 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=17.4
Q ss_pred CccEEEeccCCCcccccc-ccccCCCcceEeccCCCCCCC
Q 039944 256 SLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGCPKLKY 294 (348)
Q Consensus 256 ~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~ 294 (348)
+|++|++++|..+++-.- .+.++++|+.|++++|+.+++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 355555555544442111 233445555555555544443
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.27 E-value=2.1e-06 Score=76.58 Aligned_cols=79 Identities=22% Similarity=0.174 Sum_probs=47.5
Q ss_pred ccEEEEcCCCCcccch-hhhcCCCccceecccccccccccCC-CCCCCCCccEEEEecCCCcCcccccccCCCCcceeEe
Q 039944 101 LKSLFVYGCSKLGSIA-ERLDNNTSLETISIDSCGNLVSFPE-GGLPCAKLTRLTILDCKRLEALPKGMHNLTSLQYLRI 178 (348)
Q Consensus 101 L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l 178 (348)
|+.|+|++++.+..++ ..+..+++|+.|++++| .+..++. .+..+++|+.|+|++| .+..+|+.+.....|+.|++
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l 110 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVL 110 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEEC
T ss_pred eeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCceEEEe
Confidence 7777777533355444 55667777777777774 4555544 3456677777777774 45566554322223777777
Q ss_pred ccC
Q 039944 179 GKG 181 (348)
Q Consensus 179 ~~~ 181 (348)
.+|
T Consensus 111 ~~N 113 (347)
T 2ifg_A 111 SGN 113 (347)
T ss_dssp CSS
T ss_pred eCC
Confidence 765
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.26 E-value=3.1e-07 Score=82.42 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=20.5
Q ss_pred CCCCccEEEeccCCCccc-----cccccccCCCcceEeccCC
Q 039944 253 LPASLTSLWIEAFPNLER-----LSSSIVDLQNLTELYLFGC 289 (348)
Q Consensus 253 ~~~~L~~L~l~~~~~l~~-----i~~~~~~~~~L~~L~l~~c 289 (348)
.+++|++|+++. +.++. ++..+.++++|+.|++++|
T Consensus 277 ~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 277 ILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred cCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 345667777755 34443 2334455667777777665
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.20 E-value=5.7e-06 Score=73.77 Aligned_cols=104 Identities=22% Similarity=0.190 Sum_probs=79.7
Q ss_pred EEEEecCCCcCcccccccCCCCcceeEeccCCCCCccc-ccCCCCCCcCeeeecCCccchhhhhccccccCCCCCccEEE
Q 039944 151 RLTILDCKRLEALPKGMHNLTSLQYLRIGKGGALPSLE-EEDGLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLT 229 (348)
Q Consensus 151 ~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 229 (348)
.++.++.+.+..+|. +..+++|++|++++++.+..++ ..++.+++|+.|+++++ .+..++.. .|..+++|+.|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~---~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPD---AFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTT---GGGSCSCCCEEE
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHH---HhcCCcCCCEEe
Confidence 456666436888998 9899999999999634677776 35888999999999995 56666543 678899999999
Q ss_pred ecccCCcccccccchhccCCCCCCCCCccEEEeccCCCcc
Q 039944 230 ISRCDEDMVSFPLEDKRLGTALPLPASLTSLWIEAFPNLE 269 (348)
Q Consensus 230 l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 269 (348)
|++ +.+..+|... +..+ .|+.|++.++ .+.
T Consensus 87 l~~--N~l~~~~~~~------~~~~-~L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 87 LSF--NALESLSWKT------VQGL-SLQELVLSGN-PLH 116 (347)
T ss_dssp CCS--SCCSCCCSTT------TCSC-CCCEEECCSS-CCC
T ss_pred CCC--CccceeCHHH------cccC-CceEEEeeCC-Ccc
Confidence 998 7888888754 1233 3999999984 444
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.20 E-value=7.8e-05 Score=67.21 Aligned_cols=40 Identities=8% Similarity=0.228 Sum_probs=25.0
Q ss_pred CCcccEEeecCcccccccCCCCC--CCCccEEEeccCccccccccc
Q 039944 5 NSSLEILDIEKCHSLTYIAAVQL--PSSLKKLQICDCYNIRTLTVE 48 (348)
Q Consensus 5 ~~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~ 48 (348)
..+|+.+.+. ..+++++...| +.+|+.+.+... ++.++..
T Consensus 45 ~~~i~~v~ip--~~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~ 86 (379)
T 4h09_A 45 RDRISEVRVN--SGITSIGEANFNSCYNMTKVTVAST--VTSIGDG 86 (379)
T ss_dssp GGGCSEEEEC--TTEEEECTTTTTTCTTCCEEEECTT--CCEECTT
T ss_pred ccCCEEEEeC--CCccChHHHHhhCCCCCCEEEeCCc--ceEechh
Confidence 3466777765 35667766655 667777777542 5566655
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=1.7e-06 Score=68.71 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=50.3
Q ss_pred CCccEEEEecCCCcCcc-cccccCCCCcceeEeccCCCCCccc-ccCCC----CCCcCeeeecCCccchhhhhccccccC
Q 039944 147 AKLTRLTILDCKRLEAL-PKGMHNLTSLQYLRIGKGGALPSLE-EEDGL----PTNLQSLDIWGNMEIWKSMIERGRGFH 220 (348)
Q Consensus 147 ~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~ 220 (348)
.+|+.|++++|. ++.. ...+..+++|++|++++|..+++.. ..+.. +++|+.|++++|..+++.... .+.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~---~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII---ALH 136 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH---HGG
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH---HHh
Confidence 367888888775 3321 2344667777777777776555321 01222 235677777776666554432 345
Q ss_pred CCCCccEEEecccCCcccc
Q 039944 221 RFSSLRRLTISRCDEDMVS 239 (348)
Q Consensus 221 ~l~~L~~L~l~~~c~~l~~ 239 (348)
.+++|+.|++++ |..+++
T Consensus 137 ~~~~L~~L~L~~-c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSD-LPGVKE 154 (176)
T ss_dssp GCTTCCEEEEES-CTTCCC
T ss_pred cCCCCCEEECCC-CCCCCc
Confidence 566666666666 655543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=5.8e-06 Score=74.09 Aligned_cols=158 Identities=17% Similarity=0.101 Sum_probs=91.8
Q ss_pred CCCCccEEEEcCCCC---------cccchhhhcCCCccceecccccccccccCCCCCCCCCccEEEEecCCCcCcccccc
Q 039944 97 LPLSLKSLFVYGCSK---------LGSIAERLDNNTSLETISIDSCGNLVSFPEGGLPCAKLTRLTILDCKRLEALPKGM 167 (348)
Q Consensus 97 l~~~L~~L~l~~~~~---------~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l 167 (348)
+|+ |+.|.+..... ...+...+..+|+|+.|.++++..+ .++. + ..++|++|++..|..-......+
T Consensus 138 l~~-L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 138 FAH-FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HTT-CSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred cch-hhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 355 77777754321 1124455567889999999876333 3343 2 26789999998764222111223
Q ss_pred --cCCCCcceeEeccCC-------CCCcccccC--CCCCCcCeeeecCCccchhhhhccccccCCCCCccEEEecccCCc
Q 039944 168 --HNLTSLQYLRIGKGG-------ALPSLEEED--GLPTNLQSLDIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDED 236 (348)
Q Consensus 168 --~~l~~L~~L~l~~~~-------~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~c~~ 236 (348)
..+|+|++|+++.+. .+..+...+ ..+++|+.|.+.+|.......... .....+++|++|+++. +.
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l-a~a~~~~~L~~LdLs~--n~ 290 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF-LESDILPQLETMDISA--GV 290 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH-HHCSSGGGCSEEECCS--SC
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH-HhCccCCCCCEEECCC--CC
Confidence 368899999885311 111222122 357899999998865432221110 1124578999999986 45
Q ss_pred ccc-----cccchhccCCCCCCCCCccEEEeccCCCcc
Q 039944 237 MVS-----FPLEDKRLGTALPLPASLTSLWIEAFPNLE 269 (348)
Q Consensus 237 l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 269 (348)
+.. +.... ..+++|+.|++++| .+.
T Consensus 291 L~d~G~~~L~~~L-------~~l~~L~~L~L~~n-~i~ 320 (362)
T 2ra8_A 291 LTDEGARLLLDHV-------DKIKHLKFINMKYN-YLS 320 (362)
T ss_dssp CBHHHHHHHHTTH-------HHHTTCSEEECCSB-BCC
T ss_pred CChHHHHHHHhhc-------ccCCcceEEECCCC-cCC
Confidence 543 22221 24578999999886 344
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.07 E-value=0.0012 Score=59.33 Aligned_cols=57 Identities=9% Similarity=0.118 Sum_probs=39.8
Q ss_pred CCCCCcccEEeecCcccccccCCCCC-CCCccEEEeccCccccccccccccccccccccccCCccceeeeeC
Q 039944 2 CDTNSSLEILDIEKCHSLTYIAAVQL-PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIIS 72 (348)
Q Consensus 2 ~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 72 (348)
|..|.+|+.+.+.. .++.++...| -.+|+.+.+.. +++.+... .|... +|+.+.+.+
T Consensus 65 F~~C~~L~~I~lp~--~v~~Ig~~aF~~c~l~~i~~~~--~l~~I~~~-------aF~~~---~L~~i~lp~ 122 (379)
T 4h09_A 65 FNSCYNMTKVTVAS--TVTSIGDGAFADTKLQSYTGME--RVKKFGDY-------VFQGT---DLDDFEFPG 122 (379)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTTTTTCCCCEEEECT--TCCEECTT-------TTTTC---CCSEEECCT
T ss_pred hhCCCCCCEEEeCC--cceEechhhhcCCCCceEECCc--eeeEeccc-------eeccC---CcccccCCC
Confidence 67889999999963 5788877766 23677777754 36666665 34443 588888764
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.93 E-value=4.5e-07 Score=81.82 Aligned_cols=129 Identities=19% Similarity=0.120 Sum_probs=70.3
Q ss_pred CccEEEEcCCCCcccchhh-hcCCCccceecccccccccc-----cCCCC-CCCCCccEEEEecCCCcCc-----ccccc
Q 039944 100 SLKSLFVYGCSKLGSIAER-LDNNTSLETISIDSCGNLVS-----FPEGG-LPCAKLTRLTILDCKRLEA-----LPKGM 167 (348)
Q Consensus 100 ~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~-----~~~~~-~~~~~L~~L~l~~~~~l~~-----~~~~l 167 (348)
+|+.|++++|......... ...+++|+.|++++|. +.. +...+ ...++|++|++++|. +.. ++..+
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L 179 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGL 179 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHH
Confidence 3777777776532221111 2234577777777753 221 11111 124578888888764 322 33344
Q ss_pred cCCCCcceeEeccCCCCCc-----ccccCCCCCCcCeeeecCCccchhhhhc-cccccCCCCCccEEEecc
Q 039944 168 HNLTSLQYLRIGKGGALPS-----LEEEDGLPTNLQSLDIWGNMEIWKSMIE-RGRGFHRFSSLRRLTISR 232 (348)
Q Consensus 168 ~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~l~~L~~L~l~~ 232 (348)
...++|++|++++|. +.. +...+..+++|+.|++++|. +...... ....+...++|++|++++
T Consensus 180 ~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 180 AGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp HTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred hcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 567778888888763 332 12234556678888888854 3322110 001234557788888887
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.92 E-value=4.2e-07 Score=82.05 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=18.1
Q ss_pred CCCccEEEeccCCCccc-----cccccccCCCcceEeccCC
Q 039944 254 PASLTSLWIEAFPNLER-----LSSSIVDLQNLTELYLFGC 289 (348)
Q Consensus 254 ~~~L~~L~l~~~~~l~~-----i~~~~~~~~~L~~L~l~~c 289 (348)
++.|+.|++++| .++. +...+...++|++|++++|
T Consensus 210 ~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 210 NRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 345666666653 3332 2223444566666666664
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.72 E-value=0.00069 Score=54.38 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=5.2
Q ss_pred CCCcEEEEcCC
Q 039944 302 SSLLELRISRC 312 (348)
Q Consensus 302 ~~L~~L~l~~c 312 (348)
++|++|++++|
T Consensus 151 ~~L~~L~L~~n 161 (185)
T 1io0_A 151 TTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCCS
T ss_pred CCcCEEeccCC
Confidence 34455555444
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.46 E-value=0.00044 Score=55.57 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=7.1
Q ss_pred hcCCCccceeccccc
Q 039944 119 LDNNTSLETISIDSC 133 (348)
Q Consensus 119 ~~~l~~L~~L~l~~~ 133 (348)
+...++|++|++++|
T Consensus 32 l~~~~~L~~L~L~~n 46 (185)
T 1io0_A 32 QNNDPDLEEVNLNNI 46 (185)
T ss_dssp HTTCTTCCEEECTTC
T ss_pred HhcCCCCCEEEecCC
Confidence 334445555555443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.25 E-value=0.0019 Score=54.89 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=45.2
Q ss_pred cCCCccceecccccccccc---cCCCCCCCCCccEEEEecCCCcCcccccccCCC--CcceeEeccCCCCCccc------
Q 039944 120 DNNTSLETISIDSCGNLVS---FPEGGLPCAKLTRLTILDCKRLEALPKGMHNLT--SLQYLRIGKGGALPSLE------ 188 (348)
Q Consensus 120 ~~l~~L~~L~l~~~~~l~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~--~L~~L~l~~~~~~~~~~------ 188 (348)
..+++|+.|++++| .+.. ++..+..+++|+.|++++| .+..+ ..+..+. +|++|++.+|+-...+|
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 34677788888774 3333 3333345677888888774 34443 2233333 77888887775433332
Q ss_pred -ccCCCCCCcCeee
Q 039944 189 -EEDGLPTNLQSLD 201 (348)
Q Consensus 189 -~~~~~~~~L~~L~ 201 (348)
..+..+|+|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 1244567777665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.10 E-value=0.0029 Score=53.83 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=6.2
Q ss_pred CCCCcceeEeccC
Q 039944 169 NLTSLQYLRIGKG 181 (348)
Q Consensus 169 ~l~~L~~L~l~~~ 181 (348)
.+++|+.|++++|
T Consensus 194 ~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 194 KAPNLKILNLSGN 206 (267)
T ss_dssp HSTTCCEEECTTS
T ss_pred hCCCCCEEECCCC
Confidence 4445555555443
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.29 E-value=0.081 Score=39.42 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=19.0
Q ss_pred CCCccEEEeccCCCcccccc-ccccCCCcceEeccCC
Q 039944 254 PASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFGC 289 (348)
Q Consensus 254 ~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c 289 (348)
+++|+.|+|++ +.++.++. .+..+++|+.|++.++
T Consensus 30 p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 30 PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCC
Confidence 44566666655 45555554 3455555666655554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.42 E-value=0.22 Score=37.05 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=36.2
Q ss_pred EEeecCccccc--ccCCCCCCCCccEEEeccCccccccccccccccccccccccCCccceeeeeCCC
Q 039944 10 ILDIEKCHSLT--YIAAVQLPSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISCP 74 (348)
Q Consensus 10 ~L~l~~~~~l~--~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 74 (348)
.++.++ .+++ .+|.. ++++|+.|+|+++. ++.++.+ .|..+. +|+.|+|.+.+
T Consensus 12 ~v~Cs~-~~L~~~~vP~~-lp~~l~~L~Ls~N~-l~~l~~~-------~f~~l~--~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTA-FPVDTTELVLTGNN-LTALPPG-------LLDALP--ALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCSC-CCTTCSEEECTTSC-CSSCCTT-------TGGGCT--TCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCCC-CCcCCCEEECCCCc-CCccChh-------hhhhcc--ccCEEEecCCC
Confidence 444444 4555 66633 46678888888887 7888877 567776 78888887643
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.59 E-value=0.81 Score=36.62 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=5.0
Q ss_pred CCccEEEecc
Q 039944 223 SSLRRLTISR 232 (348)
Q Consensus 223 ~~L~~L~l~~ 232 (348)
+.|++|++++
T Consensus 98 ~tL~~L~L~~ 107 (197)
T 1pgv_A 98 PSLRVLNVES 107 (197)
T ss_dssp SSCCEEECCS
T ss_pred CccCeEecCC
Confidence 4455555554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=66.93 E-value=3 Score=33.26 Aligned_cols=11 Identities=45% Similarity=0.289 Sum_probs=5.8
Q ss_pred CCCccEEEecc
Q 039944 222 FSSLRRLTISR 232 (348)
Q Consensus 222 l~~L~~L~l~~ 232 (348)
-+.|+.|+++.
T Consensus 156 N~tL~~L~l~~ 166 (197)
T 1pgv_A 156 NESLLRVGISF 166 (197)
T ss_dssp CSSCCEEECCC
T ss_pred CCCcCeEeccC
Confidence 34555555554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.11 E-value=25 Score=24.32 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=25.7
Q ss_pred CCCCCCCccEEEeccCCCcccccc-ccccCCCcceEeccC
Q 039944 250 ALPLPASLTSLWIEAFPNLERLSS-SIVDLQNLTELYLFG 288 (348)
Q Consensus 250 ~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~ 288 (348)
+|..+.+|+.+.|.. .++.|.. .|.+|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 455677777777764 4565555 677788888888865
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.31 E-value=26 Score=24.18 Aligned_cols=45 Identities=13% Similarity=0.086 Sum_probs=32.0
Q ss_pred cccccCCCCC--CCCccEEEeccCccccccccccccccccccccccCCccceeeeeCC
Q 039944 18 SLTYIAAVQL--PSSLKKLQICDCYNIRTLTVEEGIQCSSSSRRYTSSLLEHLEIISC 73 (348)
Q Consensus 18 ~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 73 (348)
.++.|....| +.+|+.+.+... ++.+... .|..+. +|+.+.+.+-
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~-------aF~~C~--~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN--IGLLYDG-------MFSGCT--ALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT--SSCCCTT-------SSTTCT--TCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc--hheEcHH-------HHhccC--CccEEEEcCC
Confidence 4566666655 778888888763 5677766 577777 8888888763
Done!