BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039945
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/429 (46%), Positives = 281/429 (65%), Gaps = 25/429 (5%)
Query: 100 ISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDR 159
+ QA +NIG +GHV HGK+++ KA++GV T R EL R I+I+LGYA+ CE +
Sbjct: 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYAD-----CEIRK 57
Query: 160 CPRPMCYKAYGSGKEDNPLCDVPGFENC--RMKLLRHVSFVDCPGHDILMATMLNGAAIM 217
CP+ Y P C NC + LR VSFVD PGH+ LMATML+GA++M
Sbjct: 58 CPQCGTYTT-------KPRC-----PNCLAETEFLRRVSFVDSPGHETLMATMLSGASLM 105
Query: 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQ 277
DGA+L+IAANE CPQPQT EHL A+EI+ + III+QNK+DL+ E A +E I +F++
Sbjct: 106 DGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK 165
Query: 278 GTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVD 337
GT+A+ AP++PISA + NIDV+ + I IP P+R+ P M V RSFD+NKPG E+
Sbjct: 166 GTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIK 225
Query: 338 DIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAV 397
D++GGV GG+I++GV KV IE+RPGI V E P+ ++IVSL A L+ A
Sbjct: 226 DLKGGVLGGAIIQGVFKVGDEIEIRPGIKVT-EGNKTFWKPLTTKIVSLAAGNTILRKAH 284
Query: 398 PGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQ 457
PGGLIGVGTT+DP LT++D L G V+G G+LP + ++ + LL R++ G++ +
Sbjct: 285 PGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVV-----GTKEE 339
Query: 458 GKVSKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSRGEKIALSRRVEKHWR 517
K+ L E+LMLNIG+ +T + + + D+A ++L P+C G+++A+SRRV WR
Sbjct: 340 LKIEPLRTGEVLMLNIGTATTAGVITSARGDIADIKLKLPICAEIGDRVAISRRVGSRWR 399
Query: 518 LIGWGQIQA 526
LIG+G I+
Sbjct: 400 LIGYGTIEG 408
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/425 (45%), Positives = 284/425 (66%), Gaps = 21/425 (4%)
Query: 101 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRC 160
+RQA +NIG +GHV HGK+T+ KA++GV T EL R ITIK+G+A+A+I +C + C
Sbjct: 7 TRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCSN--C 64
Query: 161 PRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGA 220
R Y + +P+C G E + +R VSF+D PGH+ LM TML GA++MDGA
Sbjct: 65 GR------YST----SPICPYCGHET---EFIRRVSFIDSPGHEALMTTMLAGASLMDGA 111
Query: 221 LLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTV 280
+L+IAANE CP+PQT EHL A++I+ ++III QNK++L+ + A+ + I +FI+GTV
Sbjct: 112 ILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIKGTV 171
Query: 281 ADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIR 340
A+ AP++PISA NIDV+ + I + IP P+R+ PP M+V+RSFDVNKPG + +
Sbjct: 172 AENAPIIPISALHGANIDVLVKAIEEFIPTPKRDSNKPPKMLVLRSFDVNKPGTPPEKLV 231
Query: 341 GGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGG 400
GGV GSI++G LKV IE+RPG V +E G IK PI + IVSL A ++ A PGG
Sbjct: 232 GGVLDGSIVQGKLKVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGG 290
Query: 401 LIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKV 460
L+G+GT +DP LT+ D + G V+G+ G LP V+ +L + LL R++ G+E++ V
Sbjct: 291 LVGIGTKLDPYLTKGDLMAGNVVGKPGKLPPVWTDLRLEVHLLERVV-----GTEQELNV 345
Query: 461 SKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSRGEKIALSRRVEKHWRLIG 520
+ ++E+L+LN+G+ T V A+ D +L+L PVC GE++A+SR++ WRLIG
Sbjct: 346 EPIKRKEVLLLNVGTARTMGLVTALGKDEIELKLQIPVCAEPGERVAISRQIGSRWRLIG 405
Query: 521 WGQIQ 525
+G I+
Sbjct: 406 YGIIK 410
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 281/425 (66%), Gaps = 21/425 (4%)
Query: 101 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRC 160
SRQA +NIG +GHV HGK+T+ KA++GV T EL R ITIK+G+A+A+I +C
Sbjct: 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRC----- 60
Query: 161 PRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGA 220
P C + S P+C G E + +R VSF+D PGH+ LM TML GA++MDGA
Sbjct: 61 --PNCGRYSTS-----PVCPYCGHET---EFVRRVSFIDAPGHEALMTTMLAGASLMDGA 110
Query: 221 LLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTV 280
+L+IAANE CP+PQT EHL A++I+ ++III QNK++L+ + A+ + I +FI+GTV
Sbjct: 111 ILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTV 170
Query: 281 ADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIR 340
A+ AP++PISA NIDV+ + I IP P+R+ PP M+V+RSFDVNKPG + +
Sbjct: 171 AENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLV 230
Query: 341 GGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGG 400
GGV GGSI++G LKV IE+RPG V +E G IK PI + IVSL A ++ A PGG
Sbjct: 231 GGVLGGSIVQGKLKVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGG 289
Query: 401 LIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKV 460
L+GVGT +DP LT+ D + G V+G+ G LP V+ L + LL R++ G+E++ KV
Sbjct: 290 LVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVV-----GTEQELKV 344
Query: 461 SKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSRGEKIALSRRVEKHWRLIG 520
+ ++E+L+LN+G+ T V + D +++L PVC G+++A+SR++ WRLIG
Sbjct: 345 EPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQIGSRWRLIG 404
Query: 521 WGQIQ 525
+G I+
Sbjct: 405 YGIIK 409
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/425 (45%), Positives = 280/425 (65%), Gaps = 21/425 (4%)
Query: 101 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRC 160
SRQA +NIG +GHV HGK+T+ KA++GV T EL R ITIK+G+A+A+I +C
Sbjct: 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRC----- 60
Query: 161 PRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGA 220
P C + S P+C G E + +R VSF+D PGH+ LM TML GA++MDGA
Sbjct: 61 --PNCGRYSTS-----PVCPYCGHET---EFVRRVSFIDAPGHEALMTTMLAGASLMDGA 110
Query: 221 LLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTV 280
+L+IAANE CP+PQT EHL A++I+ ++III QNK++L+ + A+ + I +FI+GTV
Sbjct: 111 ILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTV 170
Query: 281 ADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIR 340
A+ AP++PISA NIDV+ + I IP P+R+ PP M+V+RSFDVNKPG + +
Sbjct: 171 AENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLV 230
Query: 341 GGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGG 400
GGV GSI++G LKV IE+RPG V +E G IK PI + IVSL A ++ A PGG
Sbjct: 231 GGVLDGSIVQGKLKVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGG 289
Query: 401 LIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKV 460
L+GVGT +DP LT+ D + G V+G+ G LP V+ L + LL R++ G+E++ KV
Sbjct: 290 LVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVV-----GTEQELKV 344
Query: 461 SKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSRGEKIALSRRVEKHWRLIG 520
+ ++E+L+LN+G+ T V + D +++L PVC G+++A+SR++ WRLIG
Sbjct: 345 EPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQIGSRWRLIG 404
Query: 521 WGQIQ 525
+G I+
Sbjct: 405 YGIIK 409
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 192/425 (45%), Positives = 276/425 (64%), Gaps = 21/425 (4%)
Query: 101 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRC 160
SRQA +NIG +GHV HGK+T+ KA++GV T EL R ITIK+G+A+A+I +C
Sbjct: 6 SRQAEVNIGXVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRC----- 60
Query: 161 PRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGA 220
P C + S P+C G E + +R VSF+D PGH+ L T L GA++ DGA
Sbjct: 61 --PNCGRYSTS-----PVCPYCGHET---EFVRRVSFIDAPGHEALXTTXLAGASLXDGA 110
Query: 221 LLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTV 280
+L+IAANE CP+PQT EHL A++I+ ++III QNK++L+ + A+ + I +FI+GTV
Sbjct: 111 ILVIAANEPCPRPQTREHLXALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTV 170
Query: 281 ADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIR 340
A+ AP++PISA NIDV+ + I IP P+R+ PP +V+RSFDVNKPG + +
Sbjct: 171 AENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKXLVLRSFDVNKPGTPPEKLV 230
Query: 341 GGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGG 400
GGV GGSI++G LKV IE+RPG V +E G IK PI + IVSL A ++ A PGG
Sbjct: 231 GGVLGGSIVQGKLKVGDEIEIRPG-VPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGG 289
Query: 401 LIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKV 460
L+GVGT +DP LT+ D G V+G+ G LP V+ L + LL R++ G+E++ KV
Sbjct: 290 LVGVGTKLDPYLTKGDLXAGNVVGKPGKLPPVWDSLRLEVHLLERVV-----GTEQELKV 344
Query: 461 SKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSRGEKIALSRRVEKHWRLIG 520
+ ++E+L+LN+G+ T V + D +++L PVC G+++A+SR++ WRLIG
Sbjct: 345 EPIKRKEVLLLNVGTARTXGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQIGSRWRLIG 404
Query: 521 WGQIQ 525
+G I+
Sbjct: 405 YGIIK 409
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 343 bits (881), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 178/424 (41%), Positives = 273/424 (64%), Gaps = 17/424 (4%)
Query: 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPR 162
Q +NIG +GHV HGK+T+V+AI+G+ T + EL+R +TIKLGYA I CE C +
Sbjct: 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCES--CKK 63
Query: 163 PMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALL 222
P Y P C G ++ K LR +SF+D PGH++LMATML+GAA+MDGA+L
Sbjct: 64 PEAYVT-------EPSCKSCGSDD-EPKFLRRISFIDAPGHEVLMATMLSGAALMDGAIL 115
Query: 223 LIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVAD 282
++AANE PQPQT EH A+ I+ ++++II+QNKVD++ + A++Q+ I +F +GT A+
Sbjct: 116 VVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE 175
Query: 283 GAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGG 342
P++P+SA K NID + E I + I P R+ P M+VIRSFDVNKPG + ++++GG
Sbjct: 176 NVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGG 235
Query: 343 VAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLI 402
V GGSI++G+ KV+Q I+V PG+ V ++ G + PI+++I S+ E + A PGGL+
Sbjct: 236 VIGGSIIQGLFKVDQEIKVLPGLRV-EKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLV 294
Query: 403 GVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSK 462
+GT +DP+LT+AD L+G ++ + V + + + LL R++G + KV
Sbjct: 295 AIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAK-----EMLKVDP 349
Query: 463 LAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCT-SRGEKIALSRRVEKHWRLIGW 521
+ +E LML++GS +T V +VK D +++L PV S + +SR++ WR+IGW
Sbjct: 350 IRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWRMIGW 409
Query: 522 GQIQ 525
G ++
Sbjct: 410 GLVE 413
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 343 bits (881), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 179/428 (41%), Positives = 273/428 (63%), Gaps = 25/428 (5%)
Query: 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPR 162
Q +NIG +GHV HGK+T+V+AI+G+ T + EL+R +TIKLGYA I CE C +
Sbjct: 7 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCES--CKK 64
Query: 163 PMCYKAYGS----GKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMD 218
P Y S G +D P K LR +SF+D PGH++LMATML+GAA+MD
Sbjct: 65 PEAYVTEPSCKSCGSDDEP------------KFLRRISFIDAPGHEVLMATMLSGAALMD 112
Query: 219 GALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQG 278
GA+L++AANE PQPQT EH A+ I+ ++++II+QNKVD++ + A++Q+ I +F +G
Sbjct: 113 GAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 172
Query: 279 TVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDD 338
T A+ P++P+SA K NID + E I + I P R+ P M+VIRSFDVNKPG + ++
Sbjct: 173 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNE 232
Query: 339 IRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVP 398
++GGV GGSI++G+ KV+Q I+V PG+ V ++ G + PI+++I S+ E + A P
Sbjct: 233 LKGGVIGGSIIQGLFKVDQEIKVLPGLRV-EKQGKVSYEPIFTKISSIRFGDEEFKEAKP 291
Query: 399 GGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQG 458
GGL+ +GT +DP+LT+AD L+G ++ + V + + + LL R++G +
Sbjct: 292 GGLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAK-----EML 346
Query: 459 KVSKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCT-SRGEKIALSRRVEKHWR 517
KV + +E LML++GS +T V +VK D +++L PV S + +SR++ WR
Sbjct: 347 KVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWR 406
Query: 518 LIGWGQIQ 525
+IGWG ++
Sbjct: 407 MIGWGLVE 414
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 176/424 (41%), Positives = 269/424 (63%), Gaps = 22/424 (5%)
Query: 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPR 162
Q +NIG +GHV HGK+T+V+AI+G+ T + E TIKLGYA I CE C +
Sbjct: 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEE-----TIKLGYAETNIGVCES--CKK 58
Query: 163 PMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALL 222
P Y P C G ++ K LR +SF+D PGH++LMATML+GAA+MDGA+L
Sbjct: 59 PEAYVT-------EPSCKSCGSDD-EPKFLRRISFIDAPGHEVLMATMLSGAALMDGAIL 110
Query: 223 LIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVAD 282
++AANE PQPQT EH A+ I+ ++++II+QNKVD++ + A++Q+ I +F +GT A+
Sbjct: 111 VVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE 170
Query: 283 GAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGG 342
P++P+SA K NID + E I + I P R+ P M+VIRSFDVNKPG + ++++GG
Sbjct: 171 NVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGG 230
Query: 343 VAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLI 402
V GGSI++G+ KV+Q I+V PG+ V ++ G + PI+++I S+ E + A PGGL+
Sbjct: 231 VIGGSIIQGLFKVDQEIKVLPGLRV-EKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLV 289
Query: 403 GVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSK 462
+GT +DP+LT+AD L+G ++ + V + + + LL R++G + KV
Sbjct: 290 AIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAK-----EMLKVDP 344
Query: 463 LAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCT-SRGEKIALSRRVEKHWRLIGW 521
+ +E LML++GS +T V +VK D +++L PV S + +SR++ WR+IGW
Sbjct: 345 IRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWRMIGW 404
Query: 522 GQIQ 525
G ++
Sbjct: 405 GLVE 408
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 173/424 (40%), Positives = 266/424 (62%), Gaps = 28/424 (6%)
Query: 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPR 162
Q +NIG +GHV HGK+T+V+AI+G+ T + KLGYA I CE C +
Sbjct: 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK-----------KLGYAETNIGVCES--CKK 52
Query: 163 PMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALL 222
P Y P C G ++ K LR +SF+D PGH++LMATML+GAA+MDGA+L
Sbjct: 53 PEAYVT-------EPSCKSCGSDD-EPKFLRRISFIDAPGHEVLMATMLSGAALMDGAIL 104
Query: 223 LIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVAD 282
++AANE PQPQT EH A+ I+ ++++II+QNKVD++ + A++Q+ I +F +GT A+
Sbjct: 105 VVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE 164
Query: 283 GAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGG 342
P++P+SA K NID + E I + I P R+ P M+VIRSFDVNKPG + ++++GG
Sbjct: 165 NVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGG 224
Query: 343 VAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLI 402
V GGSI++G+ KV+Q I+V PG+ V ++ G + PI+++I S+ E + A PGGL+
Sbjct: 225 VIGGSIIQGLFKVDQEIKVLPGLRV-EKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLV 283
Query: 403 GVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSK 462
+GT +DP+LT+AD L+G ++ + V + + + LL R++G + KV
Sbjct: 284 AIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAK-----EMLKVDP 338
Query: 463 LAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCT-SRGEKIALSRRVEKHWRLIGW 521
+ +E LML++GS +T V +VK D +++L PV S + +SR++ WR+IGW
Sbjct: 339 IRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWRMIGW 398
Query: 522 GQIQ 525
G ++
Sbjct: 399 GLVE 402
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 166/379 (43%), Gaps = 72/379 (18%)
Query: 98 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED 157
E + + +N+GTIGHV HGK+T+ A++ V N+ +K Y + I K +
Sbjct: 4 EFVRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAE-----NPNVEVK-DYGD--IDKAPE 55
Query: 158 DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIM 217
+R A+ +E + RH S VDCPGH + M+ GAA M
Sbjct: 56 ERARGITINTAHVE------------YETAK----RHYSHVDCPGHADYIKNMITGAAQM 99
Query: 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQ 277
DGA+L+++A + P PQT EH+ + + +I++ NKVD++ + ++ E ++ +
Sbjct: 100 DGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158
Query: 278 GTV---ADGAPVVPISA-----QLKYN----------IDVVCEY---IVKKIPIPERNFI 316
D PV+ SA Q+ N +D + E I + IP P R+
Sbjct: 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVD 218
Query: 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376
P M V F + RG VA G I RG +KV +E+ +
Sbjct: 219 KPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEVEI------------VGL 258
Query: 377 TPIYSRIVSLFAEQNE--LQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFV 434
P R V E + LQ + G +GV + ++R + GQVL + GS+
Sbjct: 259 APETRRTVVTGVEMHRKTLQEGIAGDNVGV---LLRGVSREEVERGQVLAKPGSITP-HT 314
Query: 435 ELEVNFFLLRRLLGVRTKG 453
+ E + ++L++ G R G
Sbjct: 315 KFEASVYVLKKEEGGRHTG 333
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 166/379 (43%), Gaps = 72/379 (18%)
Query: 98 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED 157
E + + +N+GTIGHV HGK+T+ A++ V N+ +K Y + I K +
Sbjct: 4 EFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAE-----NPNVEVK-DYGD--IDKAPE 55
Query: 158 DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIM 217
+R A+ +E + RH S VDCPGH + M+ GAA M
Sbjct: 56 ERARGITINTAHVE------------YETAK----RHYSHVDCPGHADYIKNMITGAAQM 99
Query: 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQ 277
DGA+L+++A + P PQT EH+ + + +I++ NKVD++ + ++ E ++ +
Sbjct: 100 DGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158
Query: 278 GTV---ADGAPVVPISA-----QLKYN----------IDVVCEY---IVKKIPIPERNFI 316
D PV+ SA Q+ N +D + E I + IP P R+
Sbjct: 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVD 218
Query: 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376
P M V F + RG VA G I RG +KV +E+ +
Sbjct: 219 KPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEVEI------------VGL 258
Query: 377 TPIYSRIVSLFAEQNE--LQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFV 434
P R V E + LQ + G +GV + ++R + GQVL + GS+
Sbjct: 259 APETRRTVVTGVEMHRKTLQEGIAGDNVGV---LLRGVSREEVERGQVLAKPGSITP-HT 314
Query: 435 ELEVNFFLLRRLLGVRTKG 453
+ E + ++L++ G R G
Sbjct: 315 KFEASVYVLKKEEGGRHTG 333
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 166/379 (43%), Gaps = 72/379 (18%)
Query: 98 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED 157
E + + +N+GTIGHV HGK+T+ A++ V N+ +K Y + I K +
Sbjct: 5 EFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAE-----NPNVEVK-DYGD--IDKAPE 56
Query: 158 DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIM 217
+R A+ +E + RH S VDCPGH + M+ GAA M
Sbjct: 57 ERARGITINTAHVE------------YETAK----RHYSHVDCPGHADYIKNMITGAAQM 100
Query: 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQ 277
DGA+L+++A + P PQT EH+ + + +I++ NKVD++ + ++ E ++ +
Sbjct: 101 DGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 159
Query: 278 GTV---ADGAPVVPISA-----QLKYN----------IDVVCEY---IVKKIPIPERNFI 316
D PV+ SA Q+ N +D + E I + IP P R+
Sbjct: 160 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVD 219
Query: 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376
P M V F + RG VA G I RG +KV +E+ +
Sbjct: 220 KPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEVEI------------VGL 259
Query: 377 TPIYSRIVSLFAEQNE--LQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFV 434
P R V E + LQ + G +GV + ++R + GQVL + GS+
Sbjct: 260 APETRRTVVTGVEMHRKTLQEGIAGDNVGV---LLRGVSREEVERGQVLAKPGSITP-HT 315
Query: 435 ELEVNFFLLRRLLGVRTKG 453
+ E + ++L++ G R G
Sbjct: 316 KFEASVYVLKKEEGGRHTG 334
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 166/379 (43%), Gaps = 72/379 (18%)
Query: 98 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED 157
E I + +N+GTIGHV HGK+T+ A++ V N+ +K Y + I K +
Sbjct: 4 EFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAE-----NPNVEVK-DYGD--IDKAPE 55
Query: 158 DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIM 217
+R A+ +E + RH S VDCPGH + M+ GAA M
Sbjct: 56 ERARGITINTAHVE------------YETAK----RHYSHVDCPGHADYIKNMITGAAQM 99
Query: 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQ 277
DGA+L+++A + P PQT EH+ + + +I++ NKVD++ + ++ E ++ +
Sbjct: 100 DGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158
Query: 278 GTV---ADGAPVVPISA-----QLKYN----------IDVVCEY---IVKKIPIPERNFI 316
D PV+ SA Q+ N +D + E I + IP P R+
Sbjct: 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVD 218
Query: 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376
P M V F + RG VA G I RG +KV +E+ +
Sbjct: 219 KPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEVEI------------VGL 258
Query: 377 TPIYSRIVSLFAEQNE--LQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFV 434
P + V E + LQ + G +GV + ++R + GQVL + GS+
Sbjct: 259 APETRKTVVTGVEMHRKTLQEGIAGDNVGV---LLRGVSREEVERGQVLAKPGSITP-HT 314
Query: 435 ELEVNFFLLRRLLGVRTKG 453
+ E + ++L++ G R G
Sbjct: 315 KFEASVYVLKKEEGGRHTG 333
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 166/379 (43%), Gaps = 72/379 (18%)
Query: 98 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED 157
E I + +N+GTIGHV HGK+T+ A++ V N+ +K Y + I K +
Sbjct: 4 EFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAE-----NPNVEVK-DYGD--IDKAPE 55
Query: 158 DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIM 217
+R A+ +E + RH S VDCPGH + M+ GAA M
Sbjct: 56 ERARGITINTAHVE------------YETAK----RHYSHVDCPGHADYIKNMITGAAQM 99
Query: 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQ 277
DGA+L+++A + P PQT EH+ + + +I++ NKVD++ + ++ E ++ +
Sbjct: 100 DGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158
Query: 278 GTV---ADGAPVVPISA-----QLKYN----------IDVVCEY---IVKKIPIPERNFI 316
D PV+ SA Q+ N +D + E I + IP P R+
Sbjct: 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVD 218
Query: 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376
P M V F + RG VA G I RG +KV +E+ +
Sbjct: 219 KPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEVEI------------VGL 258
Query: 377 TPIYSRIVSLFAEQNE--LQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFV 434
P + V E + LQ + G +GV + ++R + GQVL + GS+
Sbjct: 259 APETRKTVVTGVEMHRKTLQEGIAGDNVGV---LLRGVSREEVERGQVLAKPGSITP-HT 314
Query: 435 ELEVNFFLLRRLLGVRTKG 453
+ E + ++L++ G R G
Sbjct: 315 KFEASVYVLKKEEGGRHTG 333
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 166/379 (43%), Gaps = 72/379 (18%)
Query: 98 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED 157
E I + +N+GTIGHV HGK+T+ A++ V N+ +K Y + I K +
Sbjct: 4 EFIRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAE-----NPNVEVK-DYGD--IDKAPE 55
Query: 158 DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIM 217
+R A+ +E + RH S VDCPGH + M+ GAA M
Sbjct: 56 ERARGITINTAHVE------------YETAK----RHYSHVDCPGHADYIKNMITGAAQM 99
Query: 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQ 277
DGA+L+++A + P PQT EH+ + + +I++ NKVD++ + ++ E ++ +
Sbjct: 100 DGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158
Query: 278 GTV---ADGAPVVPISA-----QLKYN----------IDVVCEY---IVKKIPIPERNFI 316
D PV+ SA Q+ N +D + E I + IP P R+
Sbjct: 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVD 218
Query: 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376
P M V F + RG VA G I RG +KV +E+ +
Sbjct: 219 KPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEVEI------------VGL 258
Query: 377 TPIYSRIVSLFAEQNE--LQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFV 434
P + V E + LQ + G +GV + ++R + GQVL + GS+
Sbjct: 259 APETRKTVVTGVEMHRKTLQEGIAGDNVGV---LLRGVSREEVERGQVLAKPGSITP-HT 314
Query: 435 ELEVNFFLLRRLLGVRTKG 453
+ E + ++L++ G R G
Sbjct: 315 KFEASVYVLKKEEGGRHTG 333
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 166/379 (43%), Gaps = 72/379 (18%)
Query: 98 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED 157
E + + +N+GTIGHV HGK+T+ A++ V N+ +K Y + I K +
Sbjct: 4 EFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAE-----NPNVEVK-DYGD--IDKAPE 55
Query: 158 DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIM 217
+R A+ +E + RH S VDCPGH + M+ GAA M
Sbjct: 56 ERARGITINTAHVE------------YETAK----RHYSHVDCPGHADYIKNMITGAAQM 99
Query: 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQ 277
DGA+L+++A + P PQT EH+ + + +I++ NKVD++ + ++ E ++ +
Sbjct: 100 DGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158
Query: 278 GTV---ADGAPVVPISA-----QLKYN----------IDVVCEY---IVKKIPIPERNFI 316
D PV+ SA Q+ N +D + E I + IP P R+
Sbjct: 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVD 218
Query: 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376
P M V F + RG VA G I RG +KV +E+ +
Sbjct: 219 KPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEVEI------------VGL 258
Query: 377 TPIYSRIVSLFAEQNE--LQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFV 434
P + V E + LQ + G +GV + ++R + GQVL + GS+
Sbjct: 259 APETRKTVVTGVEMHRKTLQEGIAGDNVGV---LLRGVSREEVERGQVLAKPGSITP-HT 314
Query: 435 ELEVNFFLLRRLLGVRTKG 453
+ E + ++L++ G R G
Sbjct: 315 KFEASVYVLKKEEGGRHTG 333
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 164/379 (43%), Gaps = 72/379 (18%)
Query: 98 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED 157
E I + +N+GTIGHV HGK+T+ A++ V N+ +K Y + I K +
Sbjct: 4 EFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAE-----NPNVEVK-DYGD--IDKAPE 55
Query: 158 DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIM 217
+R A+ +E + RH S VDCPGH + M+ GAA M
Sbjct: 56 ERARGITINTAHVE------------YETAK----RHYSHVDCPGHADYIKNMITGAAQM 99
Query: 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQ 277
DGA+L+++A + P PQT EH+ + + +I++ NKVD++ + ++ E ++ +
Sbjct: 100 DGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158
Query: 278 GTV---ADGAPVVPISAQLKYN---------------IDVVCEY---IVKKIPIPERNFI 316
D PV+ SA L +D + E I + IP P R+
Sbjct: 159 NQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVD 218
Query: 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376
P M V F + RG VA G I RG +KV +E+ +
Sbjct: 219 KPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEVEI------------VGL 258
Query: 377 TPIYSRIVSLFAEQNE--LQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFV 434
P + V E + LQ + G +G+ + ++R + GQVL + GS+
Sbjct: 259 APETRKTVVTGVEMHRKTLQEGIAGDNVGL---LLRGVSREEVERGQVLAKPGSITP-HT 314
Query: 435 ELEVNFFLLRRLLGVRTKG 453
+ E + ++L++ G R G
Sbjct: 315 KFEASVYILKKEEGGRHTG 333
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 164/379 (43%), Gaps = 72/379 (18%)
Query: 98 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED 157
E I + +N+GTIGHV HGK+T+ A++ V N+ +K Y + I K +
Sbjct: 4 EFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAE-----NPNVEVK-DYGD--IDKAPE 55
Query: 158 DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIM 217
+R A+ +E + RH S VDCPGH + M+ GAA M
Sbjct: 56 ERARGITINTAHVE------------YETAK----RHYSHVDCPGHADYIKNMITGAAQM 99
Query: 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQ 277
DGA+L+++A + P PQT EH+ + + +I++ NKVD++ + ++ E ++ +
Sbjct: 100 DGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158
Query: 278 GTV---ADGAPVVPISAQLKYN---------------IDVVCEY---IVKKIPIPERNFI 316
D PV+ SA L +D + E I + IP P R+
Sbjct: 159 NQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVD 218
Query: 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376
P M V F + RG VA G I RG +KV +E+ +
Sbjct: 219 KPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEVEI------------VGL 258
Query: 377 TPIYSRIVSLFAEQNE--LQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFV 434
P + V E + LQ + G +G+ + ++R + GQVL + GS+
Sbjct: 259 APETRKTVVTGVEMHRKTLQEGIAGDNVGL---LLRGVSREEVERGQVLAKPGSITP-HT 314
Query: 435 ELEVNFFLLRRLLGVRTKG 453
+ E + ++L++ G R G
Sbjct: 315 KFEASVYVLKKEEGGRHTG 333
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 164/379 (43%), Gaps = 72/379 (18%)
Query: 98 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED 157
E + + +N+GTIGHV HGK+T+ A++ V N+ +K Y + I K +
Sbjct: 4 EFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAE-----NPNVEVK-DYGD--IDKAPE 55
Query: 158 DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIM 217
+R A+ +E + RH S VDCPGH + M+ GAA M
Sbjct: 56 ERARGITINTAHVE------------YETAK----RHYSHVDCPGHADYIKNMITGAAQM 99
Query: 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQ 277
DGA+L+++A + P PQT EH+ + + +I++ NKVD++ + ++ E ++ +
Sbjct: 100 DGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158
Query: 278 GTV---ADGAPVVPISAQLKYN---------------IDVVCEY---IVKKIPIPERNFI 316
D PV+ SA L +D + E I + IP P R+
Sbjct: 159 NQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVD 218
Query: 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376
P M V F + RG VA G I RG +KV +E+ +
Sbjct: 219 KPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEVEI------------VGL 258
Query: 377 TPIYSRIVSLFAEQNE--LQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFV 434
P + V E + LQ + G +G+ + ++R + GQVL + GS+
Sbjct: 259 APETRKTVVTGVEMHRKTLQEGIAGDNVGL---LLRGVSREEVERGQVLAKPGSITP-HT 314
Query: 435 ELEVNFFLLRRLLGVRTKG 453
+ E + ++L++ G R G
Sbjct: 315 KFEASVYILKKEEGGRHTG 333
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 136/310 (43%), Gaps = 61/310 (19%)
Query: 64 ERGIFKETGKMSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVK 123
E E MS++ M ++ K + TK H +N+GTIGHV HGK+T+
Sbjct: 269 ETDFAAEVAAMSKQSHMSKE--KFERTKPH------------VNVGTIGHVDHGKTTLTA 314
Query: 124 AISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYG-SGKEDNPLCDVP 182
AI+ V + Y A + D P KA G + + D P
Sbjct: 315 AITTV--------------LAKTYGGAARAFDQIDNAPEE---KARGITINTSHVEYDTP 357
Query: 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV 242
RH + VDCPGH + M+ GAA MDGA+L++AA + P PQT EH+
Sbjct: 358 ---------TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLG 407
Query: 243 EIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTV---ADGAPVVPISAQLKYNIDV 299
+ + +II+ NK D++ + + E ++ + D P+V SA D
Sbjct: 408 RQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDA 467
Query: 300 VCE--------YIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRG 351
E ++ IP PER ID P ++ I DV F + RG V G + RG
Sbjct: 468 EWEAKILELAGFLDSYIPEPERA-IDKPFLLPIE--DV----FSISG-RGTVVTGRVERG 519
Query: 352 VLKVNQFIEV 361
++KV + +E+
Sbjct: 520 IIKVGEEVEI 529
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 135/305 (44%), Gaps = 63/305 (20%)
Query: 70 ETGKMSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 129
E MS++ M ++ K + TK H +N+GTIGHV HGK+T+ AI+
Sbjct: 275 EVAAMSKQSHMSKE--KFERTKPH------------VNVGTIGHVDHGKTTLTAAIT--- 317
Query: 130 TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYG-SGKEDNPLCDVPGFENCR 188
TV K Y A + D P KA G + + D P
Sbjct: 318 TVLAKT-----------YGGAARAFDQIDNAPEE---KARGITINTSHVEYDTP------ 357
Query: 189 MKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248
RH + VDCPGH + M+ GAA MDGA+L++AA + P PQT EH+ + +
Sbjct: 358 ---TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLGRQVGVP 413
Query: 249 HIIILQNKVDLIQENVAINQHEAIMKFIQGTV---ADGAPVVPISAQLKYNIDVVCE--- 302
+II+ NK D++ + + E ++ + D P+V SA D E
Sbjct: 414 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKI 473
Query: 303 -----YIVKKIPIPERNFIDPPNMIVIRS-FDVNKPGFEVDDIRGGVAGGSILRGVLKVN 356
++ IP PER ID P ++ I F ++ RG V G + RG++KV
Sbjct: 474 LELAGFLDSYIPEPERA-IDKPFLLPIEDVFSISG--------RGTVVTGRVERGIIKVG 524
Query: 357 QFIEV 361
+ +E+
Sbjct: 525 EEVEI 529
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 120/268 (44%), Gaps = 59/268 (22%)
Query: 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMC 165
+N+GTIGHV HGK+T+ AI+ I + G A K Y+ E D P
Sbjct: 4 VNVGTIGHVDHGKTTLTAAIT-------------KILAEGGGAKFKKYE-EIDNAPEE-- 47
Query: 166 YKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIA 225
+A G + RH + DCPGH + M+ G A +DG +L++A
Sbjct: 48 -RARG--------ITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVA 98
Query: 226 ANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQEN-----VAINQHEAIMKFIQGTV 280
AN+ P PQT EHL + ++H+++ NK D +Q++ V + E + +F G
Sbjct: 99 ANDG-PMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF--GYK 155
Query: 281 ADGAPVVPISA--------------QLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRS 326
+ P++ SA ++ +D V Y IP+P R+ P + V
Sbjct: 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY----IPVPTRDLEKPFLLPVESV 211
Query: 327 FDVNKPGFEVDDIRGGVAGGSILRGVLK 354
+ + PG RG V G++ RG+LK
Sbjct: 212 YSI--PG------RGTVVTGTLERGILK 231
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 127/281 (45%), Gaps = 50/281 (17%)
Query: 95 LSPEVISR-QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIY 153
+S E R + +N+GTIGHV HGK+T+ AI+ TV K Y A
Sbjct: 1 MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAIT---TVLAKT-----------YGGAARA 46
Query: 154 KCEDDRCPRPMCYKAYG-SGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLN 212
+ D P KA G + + D P RH + VDCPGH + M+
Sbjct: 47 FDQIDNAPEE---KARGITINTSHVEYDTP---------TRHYAHVDCPGHADYVKNMIT 94
Query: 213 GAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAI 272
GAA MDGA+L++AA + P PQT EH+ + + +II+ NK D++ + + E
Sbjct: 95 GAAQMDGAILVVAATDG-PMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEME 153
Query: 273 MKFIQGTV---ADGAPVVPISAQLKYNIDVVCE--------YIVKKIPIPERNFIDPPNM 321
++ + D P+V SA D E ++ IP PER ID P +
Sbjct: 154 VRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA-IDKPFL 212
Query: 322 IVIRS-FDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEV 361
+ I F ++ RG V G + RG++KV + +E+
Sbjct: 213 LPIEDVFSISG--------RGTVVTGRVERGIIKVGEEVEI 245
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 122/269 (45%), Gaps = 49/269 (18%)
Query: 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMC 165
+N+GTIGHV HGK+T+ AI+ TV K Y A + D P
Sbjct: 12 VNVGTIGHVDHGKTTLTAAIT---TVLAKT-----------YGGAARAFDQIDNAPEE-- 55
Query: 166 YKAYG-SGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLI 224
KA G + + D P RH + VDCPGH + M+ GAA MDGA+L++
Sbjct: 56 -KARGITINTSHVEYDTP---------TRHYAHVDCPGHADYVKNMITGAAQMDGAILVV 105
Query: 225 AANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTV---A 281
AA + P PQT EH+ + + +II+ NK D++ + + E ++ +
Sbjct: 106 AATDG-PMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 164
Query: 282 DGAPVVPISAQLKYNIDVVCE--------YIVKKIPIPERNFIDPPNMIVIRS-FDVNKP 332
D P+V SA D E ++ IP PER ID P ++ I F ++
Sbjct: 165 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA-IDKPFLLPIEDVFSISG- 222
Query: 333 GFEVDDIRGGVAGGSILRGVLKVNQFIEV 361
RG V G + RG++KV + +E+
Sbjct: 223 -------RGTVVTGRVERGIIKVGEEVEI 244
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 116/268 (43%), Gaps = 61/268 (22%)
Query: 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMC 165
+N+GTIGHV HGK+T+ AI+ V + R ITI +
Sbjct: 12 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA-RGITINTSHVEY--------------- 55
Query: 166 YKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIA 225
D P RH + VDCPGH + M+ GAA MDGA+L++A
Sbjct: 56 ---------DTPT--------------RHYAHVDCPGHADYVKNMITGAAQMDGAILVVA 92
Query: 226 ANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTV---AD 282
A + P PQT EH+ + + +II+ NK D++ + + E ++ + D
Sbjct: 93 ATDG-PMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGD 151
Query: 283 GAPVVPISAQLKYNIDVVCE--------YIVKKIPIPERNFIDPPNMIVIRS-FDVNKPG 333
P+V SA D E ++ IP PER ID P ++ I F ++
Sbjct: 152 DTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA-IDKPFLLPIEDVFSISG-- 208
Query: 334 FEVDDIRGGVAGGSILRGVLKVNQFIEV 361
RG V G + RG++KV + +E+
Sbjct: 209 ------RGTVVTGRVERGIIKVGEEVEI 230
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 122/269 (45%), Gaps = 49/269 (18%)
Query: 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMC 165
+N+GTIGHV HGK+T+ AI+ TV K Y A + D P
Sbjct: 12 VNVGTIGHVDHGKTTLTAAIT---TVLAKT-----------YGGAARAFDQIDNAPEE-- 55
Query: 166 YKAYG-SGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLI 224
KA G + + D P RH + VDCPGH + M+ GAA MDGA+L++
Sbjct: 56 -KARGITINTSHVEYDTP---------TRHYAHVDCPGHADYVKNMITGAAQMDGAILVV 105
Query: 225 AANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTV---A 281
AA + P PQT EH+ + + +II+ NK D++ + + E ++ +
Sbjct: 106 AATDG-PMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 164
Query: 282 DGAPVVPISAQLKYNIDVVCE--------YIVKKIPIPERNFIDPPNMIVIRS-FDVNKP 332
D P+V SA D E ++ IP PER ID P ++ I F ++
Sbjct: 165 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA-IDKPFLLPIEDVFSISG- 222
Query: 333 GFEVDDIRGGVAGGSILRGVLKVNQFIEV 361
RG V G + RG++KV + +E+
Sbjct: 223 -------RGTVVTGRVERGIIKVGEEVEI 244
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 122/269 (45%), Gaps = 49/269 (18%)
Query: 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMC 165
+N+GTIGHV HGK+T+ AI+ TV K Y A + D P
Sbjct: 13 VNVGTIGHVDHGKTTLTAAIT---TVLAKT-----------YGGAARAFDQIDNAPEE-- 56
Query: 166 YKAYG-SGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLI 224
KA G + + D P RH + VDCPGH + M+ GAA MDGA+L++
Sbjct: 57 -KARGITINTSHVEYDTP---------TRHYAHVDCPGHADYVKNMITGAAQMDGAILVV 106
Query: 225 AANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTV---A 281
AA + P PQT EH+ + + +II+ NK D++ + + E ++ +
Sbjct: 107 AATDG-PMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 165
Query: 282 DGAPVVPISAQLKYNIDVVCE--------YIVKKIPIPERNFIDPPNMIVIRS-FDVNKP 332
D P+V SA D E ++ IP PER ID P ++ I F ++
Sbjct: 166 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA-IDKPFLLPIEDVFSISG- 223
Query: 333 GFEVDDIRGGVAGGSILRGVLKVNQFIEV 361
RG V G + RG++KV + +E+
Sbjct: 224 -------RGTVVTGRVERGIIKVGEEVEI 245
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 122/269 (45%), Gaps = 49/269 (18%)
Query: 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMC 165
+N+GTIGHV HGK+T+ AI+ TV K Y A + D P
Sbjct: 12 VNVGTIGHVDHGKTTLTAAIT---TVLAKT-----------YGGAARAFDQIDNAPEE-- 55
Query: 166 YKAYG-SGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLI 224
KA G + + D P RH + VDCPGH + M+ GAA MDGA+L++
Sbjct: 56 -KARGITINTSHVEYDTP---------TRHYAHVDCPGHADYVKNMITGAAQMDGAILVV 105
Query: 225 AANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTV---A 281
AA + P PQT EH+ + + +II+ NK D++ + + E ++ +
Sbjct: 106 AATDG-PMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 164
Query: 282 DGAPVVPISAQLKYNIDVVCE--------YIVKKIPIPERNFIDPPNMIVIRS-FDVNKP 332
D P+V SA D E ++ IP PER ID P ++ I F ++
Sbjct: 165 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA-IDKPFLLPIEDVFSISG- 222
Query: 333 GFEVDDIRGGVAGGSILRGVLKVNQFIEV 361
RG V G + RG++KV + +E+
Sbjct: 223 -------RGTVVTGRVERGIIKVGEEVEI 244
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 122/269 (45%), Gaps = 49/269 (18%)
Query: 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMC 165
+N+GTIGHV HGK+T+ AI+ TV K Y A + D P
Sbjct: 4 VNVGTIGHVDHGKTTLTAAIT---TVLAKT-----------YGGAARAFDQIDNAPEE-- 47
Query: 166 YKAYG-SGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLI 224
KA G + + D P RH + VDCPGH + M+ GAA MDGA+L++
Sbjct: 48 -KARGITINTSHVEYDTP---------TRHYAHVDCPGHADYVKNMITGAAQMDGAILVV 97
Query: 225 AANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTV---A 281
AA + P PQT EH+ + + +II+ NK D++ + + E ++ +
Sbjct: 98 AATDG-PMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 156
Query: 282 DGAPVVPISAQLKYNIDVVCE--------YIVKKIPIPERNFIDPPNMIVIRS-FDVNKP 332
D P+V SA D E ++ IP PER ID P ++ I F ++
Sbjct: 157 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA-IDKPFLLPIEDVFSISG- 214
Query: 333 GFEVDDIRGGVAGGSILRGVLKVNQFIEV 361
RG V G + RG++KV + +E+
Sbjct: 215 -------RGTVVTGRVERGIIKVGEEVEI 236
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 119/268 (44%), Gaps = 59/268 (22%)
Query: 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMC 165
+N+GTIGHV HGK+T+ AI+ I + G A K Y+ E D P
Sbjct: 15 VNVGTIGHVDHGKTTLTAAIT-------------KILAEGGGAKFKKYE-EIDNAPEE-- 58
Query: 166 YKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIA 225
+A G + RH + DCPGH + + G A +DG +L++A
Sbjct: 59 -RARG--------ITINAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVA 109
Query: 226 ANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQEN-----VAINQHEAIMKFIQGTV 280
AN+ P PQT EHL + ++H+++ NK D +Q++ V + E + +F G
Sbjct: 110 ANDG-PXPQTREHLLLARQIGVEHVVVYVNKADAVQDSEXVELVELEIRELLTEF--GYK 166
Query: 281 ADGAPVVPISA--------------QLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRS 326
+ P++ SA ++ +D V Y IP+P R+ P + V
Sbjct: 167 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY----IPVPTRDLEKPFLLPVESV 222
Query: 327 FDVNKPGFEVDDIRGGVAGGSILRGVLK 354
+ + PG RG V G++ RG+LK
Sbjct: 223 YSI--PG------RGTVVTGTLERGILK 242
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 165/381 (43%), Gaps = 76/381 (19%)
Query: 98 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED 157
E I + +N+GTIGHV HGK+T+ A++ V RN+ +K Y + I K +
Sbjct: 4 EFIRTKRHVNVGTIGHVDHGKTTLTAALTYVAAAE-----NRNVEVK-DYGD--IDKARE 55
Query: 158 DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIM 217
+R A+ +E + RH S VDC GH + M+ GAA M
Sbjct: 56 ERARGITINTAH------------VEYETAK----RHYSHVDCRGHADYIKNMITGAAQM 99
Query: 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENV-----------AI 266
DGA+L+++A + QT EH+ + +++I++ NKVD++ + +
Sbjct: 100 DGAILVVSAADG-RMRQTREHILLARQVGVRYIVVFMNKVDMVDDRELLDLVEMEVRDLL 158
Query: 267 NQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDP-------- 318
NQ+E + + V G+ ++ + K +K E ++D
Sbjct: 159 NQYE--FRGDEVRVIRGSALLALEEMHKN----------RKTKRGENEWVDKIWELLDAI 206
Query: 319 PNMIVIRSFDVNKPGF-EVDDI-----RGGVAGGSILRGVLKVNQFIEVRPGIVVKDESG 372
I R DV+K V+D+ RG VA G I RG +KV +E+ G+ +
Sbjct: 207 DEYIRTRVRDVDKRFLMRVEDVFTITGRGTVATGRIERGKVKVGDEVEI-VGLARETRKT 265
Query: 373 NIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEV 432
+ ++ + LQ + G +G+ + ++R + GQVL + GS+
Sbjct: 266 VVTGVEMHRKT---------LQEGIAGDNVGL---LLRGVSREEVERGQVLAKRGSITR- 312
Query: 433 FVELEVNFFLLRRLLGVRTKG 453
+ E + ++L++ G R G
Sbjct: 313 HTKFEASVYILKKEEGGRHTG 333
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 22/181 (12%)
Query: 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIII 252
RH + VDCPGH + M+ GAA MDGA+L++AA + P PQT EH+ + + +II+
Sbjct: 16 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLGRQVGVPYIIV 74
Query: 253 LQNKVDLIQENVAINQHEAIMKFIQGTV---ADGAPVVPISAQLKYNIDVVCE------- 302
NK D++ + + E ++ + D P+V SA D E
Sbjct: 75 FLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELA 134
Query: 303 -YIVKKIPIPERNFIDPPNMIVIRS-FDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIE 360
++ IP PER ID P ++ I F ++ RG V G + RG++KV + +E
Sbjct: 135 GFLDSYIPEPERA-IDKPFLLPIEDVFSISG--------RGTVVTGRVERGIIKVGEEVE 185
Query: 361 V 361
+
Sbjct: 186 I 186
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 121/266 (45%), Gaps = 57/266 (21%)
Query: 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNEL----ERNITIKLGYANAKIYKCEDDRCP 161
IN+G GH+ HGK+T+ K ++ + + ++L +R ITI +G++ K+
Sbjct: 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--------- 70
Query: 162 RPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGAL 221
EN R ++ VD PGH L+ +++ A I+D AL
Sbjct: 71 -----------------------ENYR------ITLVDAPGHADLIRAVVSAADIIDLAL 101
Query: 222 LLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVA 281
+++ A E P+ QT EH+ ++ + I+++ + E I + E IMK I +
Sbjct: 102 IVVDAKEG-PKTQTGEHMLILDHFNIPIIVVITKSDNAGTEE--IKRTEMIMKSILQSTH 158
Query: 282 D--GAPVVPISAQLKYNIDVVCEYIVKKIPIPE--RNFIDPPNMIVIRSFDVNKPGFEVD 337
+ + ++PISA+ + +D + I+ + E RN M + +F +
Sbjct: 159 NLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGA----- 213
Query: 338 DIRGGVAGGSILRGVLKVNQFIEVRP 363
G V G+I +G++KV ++V P
Sbjct: 214 ---GTVVTGTINKGIVKVGDELKVLP 236
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 22/181 (12%)
Query: 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIII 252
RH + VD PGH + M+ GAA MDGA+L++AA + P PQT EH+ + + +II+
Sbjct: 16 RHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLGRQVGVPYIIV 74
Query: 253 LQNKVDLIQENVAINQHEAIMKFIQGTV---ADGAPVVPISAQLKYNIDVVCE------- 302
NK D++ + + E ++ + D P+V SA D E
Sbjct: 75 FLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELA 134
Query: 303 -YIVKKIPIPERNFIDPPNMIVIRS-FDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIE 360
++ IP PER ID P ++ I F ++ RG V G + RG++KV + +E
Sbjct: 135 GFLDSYIPEPERA-IDKPFLLPIEDVFSISG--------RGTVVTGRVERGIIKVGEEVE 185
Query: 361 V 361
+
Sbjct: 186 I 186
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 91/397 (22%), Positives = 153/397 (38%), Gaps = 117/397 (29%)
Query: 100 ISRQATINIGTIGHVAHGKSTVVKAI---------------------SGVQTVRF----- 133
++ + +N+ IGHV HGKST+V + G ++ +F
Sbjct: 1 MAEKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILD 60
Query: 134 --KNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKL 191
K E ER ITI L + FE +
Sbjct: 61 KMKEERERGITIDLTFMK----------------------------------FETKKYVF 86
Query: 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANES------CPQPQTSEHLAAVEIM 245
+ +D PGH + M+ GA+ D A+L+++A + + QT EHL M
Sbjct: 87 ----TIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTM 142
Query: 246 RLQHIIILQNKVDLIQENVAINQHEAIM----KFIQ--GTVADGAPVVPISAQL------ 293
++ II+ NK+D N ++E ++ KF++ G D P +P+SA
Sbjct: 143 GIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIE 202
Query: 294 ------KYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGS 347
YN + E + + P P + P + V + + PG G V G
Sbjct: 203 RSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPVQNVYSI--PG------AGTVPVGR 253
Query: 348 ILRGVLKV-NQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGT 406
+ GVL+V ++ + + PG+V G ++ ++ + +LQ A PG IG
Sbjct: 254 VETGVLRVGDKVVFMPPGVV-----GEVRSIEMHYQ---------QLQQAEPGDNIGFAV 299
Query: 407 TMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLL 443
++++D G V G + P V E E F++
Sbjct: 300 R---GVSKSDIKRGDVAGHLDKPPTVAEEFEARIFVI 333
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 91/397 (22%), Positives = 153/397 (38%), Gaps = 117/397 (29%)
Query: 100 ISRQATINIGTIGHVAHGKSTVVKAI---------------------SGVQTVRF----- 133
++ + +N+ IGHV HGKST+V + G ++ +F
Sbjct: 4 MAEKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILD 63
Query: 134 --KNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKL 191
K E ER ITI L + FE +
Sbjct: 64 KMKEERERGITIDLTFMK----------------------------------FETKKYVF 89
Query: 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANES------CPQPQTSEHLAAVEIM 245
+ +D PGH + M+ GA+ D A+L+++A + + QT EHL M
Sbjct: 90 ----TIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTM 145
Query: 246 RLQHIIILQNKVDLIQENVAINQHEAIM----KFIQ--GTVADGAPVVPISAQL------ 293
++ II+ NK+D N ++E ++ KF++ G D P +P+SA
Sbjct: 146 GIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIE 205
Query: 294 ------KYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGS 347
YN + E + + P P + P + V + + PG G V G
Sbjct: 206 RSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPVQNVYSI--PG------AGTVPVGR 256
Query: 348 ILRGVLKV-NQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGT 406
+ GVL+V ++ + + PG+V G ++ ++ + +LQ A PG IG
Sbjct: 257 VETGVLRVGDKVVFMPPGVV-----GEVRSIEMHYQ---------QLQQAEPGDNIGFAV 302
Query: 407 TMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLL 443
++++D G V G + P V E E F++
Sbjct: 303 R---GVSKSDIKRGDVAGHLDKPPTVAEEFEARIFVI 336
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 144/367 (39%), Gaps = 71/367 (19%)
Query: 100 ISRQATINIGTIGHVAHGKSTVV------KAISGVQTVRFKNELERNITIKLGYANAKIY 153
+S++ +N+ IGHV HGKST+V + +TV+ E + KLG + K +
Sbjct: 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAK----KLGKESEK-F 55
Query: 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHV-SFVDCPGHDILMATMLN 212
DR KE+ R + ++ + +D PGH + M+
Sbjct: 56 AFLLDRL------------KEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMIT 103
Query: 213 GAAIMDGALLLIAANES------CPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAI 266
GA+ D A+L+++A + + QT EH+ + M L +I+ NK+DL +
Sbjct: 104 GASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163
Query: 267 NQHEAI-----------------MKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309
+++ I ++F+ G + S +K+ E + ++
Sbjct: 164 KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLE 223
Query: 310 IPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKD 369
+P + +D P I I+ + + + G V G + GVLKV I P
Sbjct: 224 LPPKP-VDKPLRIPIQDV------YSISGV-GTVPVGRVESGVLKVGDKIVFMP------ 269
Query: 370 ESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSL 429
+G + + S+ ++ A PG IG + + D G V+G +
Sbjct: 270 -AGKV------GEVRSIETHHTKMDKAEPGDNIGFNVR---GVEKKDIKRGDVVGHPNNP 319
Query: 430 PEVFVEL 436
P V E
Sbjct: 320 PTVADEF 326
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 34/191 (17%)
Query: 95 LSPEVISRQATINIGTIGHVAHGKSTV---VKAISGVQTVRFKNELERNI------TIKL 145
++P ++ +N+ IGHV GKST+ + ++G+ R + ER T L
Sbjct: 7 VAPPGAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYL 66
Query: 146 GYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDI 205
+A + E D+ +AY FE + +H + +D PGH
Sbjct: 67 SWA-LDTNQEERDKGKTVEVGRAY--------------FETEK----KHFTILDAPGHKS 107
Query: 206 LMATMLNGAAIMDGALLLIAANESCPQP------QTSEHLAAVEIMRLQHIIILQNKVDL 259
+ M+ GA+ D A+L+I+A + + QT EH + ++H+I+L NK+D
Sbjct: 108 FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167
Query: 260 IQENVAINQHE 270
N + ++E
Sbjct: 168 PTVNWSNERYE 178
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 105/273 (38%), Gaps = 73/273 (26%)
Query: 107 NIGTIGHVAHGKSTVVKAI---SGVQTVRFKN---------ELERNITIKLGYANAKIYK 154
N I HV HGKST+ + +G + R K E ER IT+K+ A YK
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQ-AVRMFYK 66
Query: 155 CEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGA 214
+D YK + +D PGH +
Sbjct: 67 AKDGN-----TYK---------------------------LHLIDTPGHVDFSYEVSRAL 94
Query: 215 AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQ--NKVDLIQENVAINQHEAI 272
A +GALLLI A++ + AVE Q ++I+ NK+DL +V + +
Sbjct: 95 AACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSADV-----DRV 145
Query: 273 MKFIQGTVA-DGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNK 331
K I+ + D + SA+ I+ + E IV +IP P+ + P ++ S+
Sbjct: 146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSY---- 201
Query: 332 PGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPG 364
D RG VA I G EV+PG
Sbjct: 202 ----YDPYRGAVAFVRIFDG--------EVKPG 222
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 104/273 (38%), Gaps = 73/273 (26%)
Query: 107 NIGTIGHVAHGKSTVVKAI---SGVQTVRFKN---------ELERNITIKLGYANAKIYK 154
N I HV HGKST+ + +G + R K E ER IT+K A YK
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQ-AVRXFYK 66
Query: 155 CEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGA 214
+D YK + +D PGH +
Sbjct: 67 AKDGN-----TYK---------------------------LHLIDTPGHVDFSYEVSRAL 94
Query: 215 AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQ--NKVDLIQENVAINQHEAI 272
A +GALLLI A++ + AVE Q ++I+ NK+DL +V + +
Sbjct: 95 AACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSADV-----DRV 145
Query: 273 MKFIQGTVA-DGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNK 331
K I+ + D + SA+ I+ + E IV +IP P+ + P ++ S+
Sbjct: 146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSY---- 201
Query: 332 PGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPG 364
D RG VA I G EV+PG
Sbjct: 202 ----YDPYRGAVAFVRIFDG--------EVKPG 222
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 129/336 (38%), Gaps = 51/336 (15%)
Query: 102 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCP 161
R+ + T G+V GKST++ + +++ LE IT ++K D
Sbjct: 21 RKEXLRFLTCGNVDDGKSTLIGRLLHDSKXIYEDHLEA-IT-----RDSKKSGTTGDDVD 74
Query: 162 RPMCYKAYGSGKEDNPLCDVPG--FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDG 219
+ + +E DV F + K + D PGH+ GA+ D
Sbjct: 75 LALLVDGLQAEREQGITIDVAYRYFSTAKRKFI----IADTPGHEQYTRNXATGASTCDL 130
Query: 220 ALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDL--IQENVAINQHEAIMKFIQ 277
A++L+ A Q QT H ++ ++HI++ NK DL E V + +KF +
Sbjct: 131 AIILVDARYGV-QTQTRRHSYIASLLGIKHIVVAINKXDLNGFDERVFESIKADYLKFAE 189
Query: 278 G-------------TVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP-ERNFIDPPNMIV 323
G + G VV S + + I++ + I +RN+ D +
Sbjct: 190 GIAFKPTTXAFVPXSALKGDNVVNKSERSPWYAGQSLXEILETVEIASDRNYTDLRFPVQ 249
Query: 324 IRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRI 383
VN+P G +A G + +G I V P SG SR+
Sbjct: 250 Y----VNRPNLNFRGFAGTLASGIVHKG-----DEIVVLP-------SGK------SSRV 287
Query: 384 VSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLV 419
S+ + EL+ A PG + + + ++R D LV
Sbjct: 288 KSIVTFEGELEQAGPGQAVTLTXEDEIDISRGDLLV 323
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 22/162 (13%)
Query: 106 INIGTIGHVAHGKSTV---VKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPR 162
+NI IGHV GKST+ + ++G+ R ++ER + G + + D
Sbjct: 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAK-EAGKESWYLSWALDSTSEE 102
Query: 163 PMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALL 222
K G+ FE R S +D PGH + M+NGA+ D +L
Sbjct: 103 REKGKTVEVGR--------AYFETEH----RRFSLLDAPGHKGYVTNMINGASQADIGVL 150
Query: 223 LIAANESCPQP------QTSEHLAAVEIMRLQHIIILQNKVD 258
+I+A + QT EH + H++++ NK+D
Sbjct: 151 VISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMD 192
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 55/168 (32%)
Query: 106 INIGTIGHVAHGKSTVVKAI---SGV---------QTVRFKNEL---ERNITIKLGYANA 150
INIG + HV GK+T+ +++ SG T R N L +R ITI+ G +
Sbjct: 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 62
Query: 151 KIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATM 210
+ +EN + V+ +D PGH +A +
Sbjct: 63 Q--------------------------------WENTK------VNIIDTPGHMDFLAEV 84
Query: 211 LNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVD 258
+++DGA+LLI+A + Q QT A+ M + I + NK+D
Sbjct: 85 YRSLSVLDGAILLISAKDGV-QAQTRILFHALRKMGIPTIFFI-NKID 130
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 197 FVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK 256
F+D PGH+ G A+ D A+L++ NE +PQT E L + + R ++ NK
Sbjct: 74 FIDTPGHEAFTTLRKRGGALADLAILIVDINEGF-KPQTQEALNILRMYRTP-FVVAANK 131
Query: 257 VDLIQ 261
+D I
Sbjct: 132 IDRIH 136
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 197 FVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK 256
F+D PGH+ G A+ D A+L++ NE +PQT E L + R ++ NK
Sbjct: 74 FIDTPGHEAFTTLRKRGGALADLAILIVDINEGF-KPQTQEALNILRXYRTP-FVVAANK 131
Query: 257 VDLIQ 261
+D I
Sbjct: 132 IDRIH 136
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 194 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANES------CPQPQTSEHLAAVEIMRL 247
V+ +D PGH + M+ G + D A+L+IA QT EH + +
Sbjct: 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGV 145
Query: 248 QHIIILQNKVDLIQENVAINQH--EAIMKFIQ--GTVADGAPVVPISAQLKYNIDVVCE 302
+ +I+ NK+D ++ + + Q + FI+ G P VPIS +N D + E
Sbjct: 146 RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISG---WNGDNMIE 201
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 199 DCPGHDILMATMLNGAAIMDGALLLIAANES------CPQPQTSEHLAAVEIMRLQHIII 252
D PGH ++ M+ GA+ D A+L++ ++++ QT EH + + + I++
Sbjct: 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320
Query: 253 LQNKVDLI 260
NK+DL+
Sbjct: 321 SVNKLDLM 328
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 39/166 (23%)
Query: 107 NIGTIGHVAHGKSTVVKA-------ISGVQT--VRF----KNELERNITIKLGYANAKIY 153
N+ I HV HGKST+ + IS + RF K+E ER ITIK +Y
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIK--STAISLY 78
Query: 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNG 213
D + + K G+ ++ +D PGH + +
Sbjct: 79 SEMSDEDVKEIKQKTDGNS--------------------FLINLIDSPGHVDFSSEVTAA 118
Query: 214 AAIMDGALLLIAANES-CPQPQTSEHLAAVEIMRLQHIIILQNKVD 258
+ DGAL+++ E C Q +T A E R++ ++++ NKVD
Sbjct: 119 LRVTDGALVVVDTIEGVCVQTETVLRQALGE--RIKPVVVI-NKVD 161
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 39/166 (23%)
Query: 107 NIGTIGHVAHGKSTVVKA-------ISGVQT--VRF----KNELERNITIKLGYANAKIY 153
N+ I HV HGKST+ + IS + RF K+E ER ITIK +Y
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIK--STAISLY 78
Query: 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNG 213
D + + K G N + ++ +D PGH + +
Sbjct: 79 SEMSDEDVKEIKQKTDG---------------NSFL-----INLIDSPGHVDFSSEVTAA 118
Query: 214 AAIMDGALLLIAANES-CPQPQTSEHLAAVEIMRLQHIIILQNKVD 258
+ DGAL+++ E C Q +T A E R++ ++++ NKVD
Sbjct: 119 LRVTDGALVVVDTIEGVCVQTETVLRQALGE--RIKPVVVI-NKVD 161
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIII 252
+ ++F+D PGH+ GA + D +L++AA++ PQT E + + + II+
Sbjct: 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV-MPQTVEAINHAKAANVP-IIV 112
Query: 253 LQNKVDLIQEN 263
NK+D + N
Sbjct: 113 AINKMDKPEAN 123
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 35.4 bits (80), Expect = 0.089, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 106 INIGTIGHVAHGKSTVVKAISGV 128
+N+GTIGHV HGK+T+ AI+ V
Sbjct: 5 VNVGTIGHVDHGKTTLTAAITTV 27
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 250 IIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309
+I+ NKVD +QE + H ++F+ + + +VPISA+ N+D + + K +P
Sbjct: 116 VILAVNKVDNVQEKADLLPH---LQFLASQM-NFLDIVPISAETGLNVDTIAAIVRKHLP 171
Query: 310 IPERNFIDPPNMIVIRS 326
+F P + I RS
Sbjct: 172 EATHHF--PEDYITDRS 186
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 250 IIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309
+I+ NKVD +QE + H ++F+ + + +VPISA+ N+D + + K +P
Sbjct: 119 VILAVNKVDNVQEKADLLPH---LQFLASQM-NFLDIVPISAETGLNVDTIAAIVRKHLP 174
Query: 310 IPERNFIDPPNMIVIRS 326
+F P + I RS
Sbjct: 175 EATHHF--PEDYITDRS 189
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Query: 430 PEVFVELEVNFFLLRRL-----LGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLA 484
P + VELE+ F L+R+ L +R++ E++ K A E++ + GS+ G+RV+
Sbjct: 87 PMIAVELEIPFVLMRKADKNAGLLIRSEPYEKE---YKEAAPEVMTIRYGSIGKGSRVVL 143
Query: 485 VKNDLA 490
+ + LA
Sbjct: 144 IDDVLA 149
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 29/203 (14%)
Query: 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCY 166
N I H+ HGKST+ I + E+E A++ D R +
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREME-----------AQVLDSMDLERERGITI 54
Query: 167 KAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAA 226
KA S D D ++ ++F+D PGH + A +GALL++ A
Sbjct: 55 KAQ-SVTLDYKASDGETYQ---------LNFIDTPGHVDFSYEVSRSLAACEGALLVVDA 104
Query: 227 NESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVA-DGAP 285
+ + A+E M L+ + +L NK+DL + E + + I+ V D
Sbjct: 105 GQGVEAQTLANCYTAME-MDLEVVPVL-NKIDLPAAD-----PERVAEEIEDIVGIDATD 157
Query: 286 VVPISAQLKYNIDVVCEYIVKKI 308
V SA+ + V E +V+ I
Sbjct: 158 AVRCSAKTGVGVQDVLERLVRDI 180
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 270 EAIMKFIQGTVADG--APVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSF 327
EA+ K V G PV S + + + + E I++ +P P F D P + + F
Sbjct: 232 EALEKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERFGDGPPLAKV--F 289
Query: 328 DVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLF 387
V +VD G VA + RG LK PG ++ E+G ++ +Y V +
Sbjct: 290 KV-----QVDPFMGQVAYLRLYRGRLK--------PGDSLQSEAGQVRLPHLY---VPMG 333
Query: 388 AEQNELQFAVPGGLIGV 404
+ E++ A G ++GV
Sbjct: 334 KDLLEVEEAEAGFVLGV 350
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 29/203 (14%)
Query: 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCY 166
N I H+ HGKST+ I + E+E A++ D R +
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREME-----------AQVLDSMDLERERGITI 54
Query: 167 KAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAA 226
KA S D D ++ ++F+D PGH + A +GALL++ A
Sbjct: 55 KA-QSVTLDYKASDGETYQ---------LNFIDTPGHVDFSYEVSRSLAACEGALLVVDA 104
Query: 227 NESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVA-DGAP 285
+ + A+E M L+ + +L NK+DL + E + + I+ V D
Sbjct: 105 GQGVEAQTLANCYTAME-MDLEVVPVL-NKIDLPAAD-----PERVAEEIEDIVGIDATD 157
Query: 286 VVPISAQLKYNIDVVCEYIVKKI 308
V SA+ + V E +V+ I
Sbjct: 158 AVRCSAKTGVGVQDVLERLVRDI 180
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 32/204 (15%)
Query: 100 ISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDR 159
S + T NIG I H+ GK+T + I + + + + G + + E DR
Sbjct: 5 FSLEKTRNIGIIAHIDAGKTTTTERI-----LYYTGRIHKIGETHEGASQMDWMEQEQDR 59
Query: 160 CPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDG 219
G +E R V+ +D PGH L + ++DG
Sbjct: 60 ------------GITITSAATTAAWEGHR------VNIIDTPGHVDLTVEVERSLRVLDG 101
Query: 220 ALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGT 279
A+ ++ A +S +PQT + I+ + NK+D + N ++
Sbjct: 102 AVTVLDA-QSGVEPQTETVWRQATTYGVPRIVFV-NKMD----KLGANFEYSVSTLHDRL 155
Query: 280 VADGAPV-VPISAQLKYN--IDVV 300
A+ AP+ +PI A+ ++ ID+V
Sbjct: 156 QANAAPIQLPIGAEDEFEAIIDLV 179
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 195 VSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL 239
++F+D PGH + GA D +L++AA++ PQT E +
Sbjct: 53 ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV-MPQTIEAI 96
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 194 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQP------QTSEHLAAVEIMRL 247
+ + VD PGH + + G + D A+L + + + + QT EH+ + +
Sbjct: 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI 171
Query: 248 QHIIILQNKVD 258
++II NK+D
Sbjct: 172 HNLIIAMNKMD 182
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 194 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQP------QTSEHLAAVEIMRL 247
+ + VD PGH + + G + D A+L + + + + QT EH+ + +
Sbjct: 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI 305
Query: 248 QHIIILQNKVD 258
++II NK+D
Sbjct: 306 HNLIIAMNKMD 316
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 194 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQP------QTSEHLAAVEIMRL 247
+ + VD PGH + + G + D A+L + + + + QT EH + +
Sbjct: 112 NFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFESGFDLDGQTKEHXLLASSLGI 171
Query: 248 QHIIILQNKVD 258
++II NK D
Sbjct: 172 HNLIIAXNKXD 182
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 32/204 (15%)
Query: 100 ISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDR 159
S + T NIG + H+ GK+T + I + + + + G + + E DR
Sbjct: 5 FSLEKTRNIGIMAHIDAGKTTTTERI-----LYYTGRIHKIGETHEGASQMDWMEQEQDR 59
Query: 160 CPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDG 219
G +E R V+ +D PGH L + ++DG
Sbjct: 60 ------------GITITSAATTAAWEGHR------VNIIDTPGHVDLTVEVERSLRVLDG 101
Query: 220 ALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGT 279
A+ ++ A +S +PQT + I+ + NK+D + N ++
Sbjct: 102 AVTVLDA-QSGVEPQTETVWRQATTYGVPRIVFV-NKMD----KLGANFEYSVSTLHDRL 155
Query: 280 VADGAPV-VPISAQLKYN--IDVV 300
A+ AP+ +PI A+ ++ ID+V
Sbjct: 156 QANAAPIQLPIGAEDEFEAIIDLV 179
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 32/204 (15%)
Query: 100 ISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDR 159
S + T NIG I H+ GK+T + I + + + + G + + E DR
Sbjct: 5 FSLEKTRNIGIIAHIDAGKTTTTERI-----LYYTGRIHKIGETHEGASQMDWMEQEQDR 59
Query: 160 CPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDG 219
G +E R V+ +D PGH + ++DG
Sbjct: 60 ------------GITITSAATTAAWEGHR------VNIIDTPGHVDFTVEVERSLRVLDG 101
Query: 220 ALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGT 279
A+ ++ A +S +PQT + I+ + NK+D + N ++
Sbjct: 102 AVTVLDA-QSGVEPQTETVWRQATTYGVPRIVFV-NKMD----KLGANFEYSVSTLHDRL 155
Query: 280 VADGAPV-VPISAQLKYN--IDVV 300
A+ AP+ +PI A+ ++ ID+V
Sbjct: 156 QANAAPIQLPIGAEDEFEAIIDLV 179
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 88/217 (40%), Gaps = 34/217 (15%)
Query: 195 VSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQ 254
++F+D PGH A G + D +L++AA++ + QT E + + + I++
Sbjct: 54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMK-QTVESIQHAKDAHVP-IVLAI 111
Query: 255 NKVDLIQENVAINQHEAI-MKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPER 313
NK D + + + E + + V +SA N+ + E + + E
Sbjct: 112 NKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLEL 171
Query: 314 NFIDPPNMI---VIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDE 370
DP + VI SF D RG V I RG L+ + I+V +
Sbjct: 172 K-ADPTGAVEGTVIESF--------TDKGRGPVTTAIIQRGTLR-------KGSILVAGK 215
Query: 371 SGNIKCTPIYSRIVSLFAEQ----NELQFAVPGGLIG 403
S ++++ +F E NE ++P G+IG
Sbjct: 216 S--------WAKVRLMFDENGRAVNEAYPSMPVGIIG 244
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|B Chain B, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|C Chain C, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|D Chain D, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
Length = 347
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 254 QNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKY 295
Q K+ I+E V HE + I+ + GAP + ++A Y
Sbjct: 22 QRKLPFIEEYVECKTHEEVAHAIKEXIVRGAPAIGVAAAFGY 63
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 32/204 (15%)
Query: 100 ISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDR 159
S + T NIG + H+ GK+T + I + + + + G + + E DR
Sbjct: 5 FSLEKTRNIGIMAHIDAGKTTTTERI-----LYYTGRIHKIGETHEGASQMDWMEQEQDR 59
Query: 160 CPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDG 219
G +E R V+ +D PGH + ++DG
Sbjct: 60 ------------GITITSAATTAAWEGHR------VNIIDTPGHVDFTVEVERSLRVLDG 101
Query: 220 ALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGT 279
A+ ++ A +S +PQT + I+ + NK+D + N ++
Sbjct: 102 AVTVLDA-QSGVEPQTETVWRQATTYGVPRIVFV-NKMD----KLGANFEYSVSTLHDRL 155
Query: 280 VADGAPV-VPISAQLKYN--IDVV 300
A+ AP+ +PI A+ ++ ID+V
Sbjct: 156 QANAAPIQLPIGAEDEFEAIIDLV 179
>pdb|3VUQ|A Chain A, Crystal Structure Of Ttha0167, A Transcriptional
Regulator, Tetr/acrr Family From Thermus Thermophilus
Hb8
pdb|3VUQ|B Chain B, Crystal Structure Of Ttha0167, A Transcriptional
Regulator, Tetr/acrr Family From Thermus Thermophilus
Hb8
pdb|3VUQ|C Chain C, Crystal Structure Of Ttha0167, A Transcriptional
Regulator, Tetr/acrr Family From Thermus Thermophilus
Hb8
pdb|3VUQ|D Chain D, Crystal Structure Of Ttha0167, A Transcriptional
Regulator, Tetr/acrr Family From Thermus Thermophilus
Hb8
Length = 187
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 73 KMSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVR 132
K ++ ++E L+ L L L E ++R+A + GTI K ++KA+ +T
Sbjct: 11 KDKKRAILEATLAVLRERGLSGLKMEEVARRAEVGKGTIYLYFRDKRDLLKALVEERTWA 70
Query: 133 FKNELERNITIK 144
F E+E + K
Sbjct: 71 FYREVEEVVRRK 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,167,943
Number of Sequences: 62578
Number of extensions: 624278
Number of successful extensions: 1565
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1388
Number of HSP's gapped (non-prelim): 118
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)