Query 039945
Match_columns 531
No_of_seqs 458 out of 4193
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:34:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00327 eukaryotic translatio 100.0 6.7E-71 1.4E-75 576.9 48.0 448 78-530 7-455 (460)
2 KOG0466 Translation initiation 100.0 1.3E-73 2.9E-78 538.2 21.6 455 76-531 9-463 (466)
3 COG5257 GCD11 Translation init 100.0 1.4E-70 3E-75 522.4 38.6 408 103-528 8-415 (415)
4 TIGR03680 eif2g_arch translati 100.0 3.9E-61 8.5E-66 502.7 44.4 405 103-525 2-406 (406)
5 COG5256 TEF1 Translation elong 100.0 5E-60 1.1E-64 468.6 35.1 344 102-526 4-425 (428)
6 PRK04000 translation initiatio 100.0 5.4E-59 1.2E-63 486.1 43.7 406 102-525 6-411 (411)
7 PRK12736 elongation factor Tu; 100.0 6.5E-57 1.4E-61 469.1 41.9 350 102-526 9-391 (394)
8 PLN03127 Elongation factor Tu; 100.0 1E-56 2.2E-61 471.4 41.1 353 101-526 57-444 (447)
9 PRK12735 elongation factor Tu; 100.0 1.6E-56 3.6E-61 466.4 41.6 350 102-526 9-393 (396)
10 PLN00043 elongation factor 1-a 100.0 1.4E-56 2.9E-61 471.0 39.8 344 102-526 4-428 (447)
11 PLN03126 Elongation factor Tu; 100.0 2.3E-56 5E-61 470.7 41.4 350 102-526 78-475 (478)
12 TIGR00485 EF-Tu translation el 100.0 3.6E-56 7.8E-61 464.2 42.2 350 102-526 9-391 (394)
13 KOG0460 Mitochondrial translat 100.0 3.7E-58 7.9E-63 440.0 24.7 352 102-528 51-437 (449)
14 PRK12317 elongation factor 1-a 100.0 2.2E-56 4.8E-61 471.2 39.3 343 102-526 3-419 (425)
15 PTZ00141 elongation factor 1- 100.0 2.9E-56 6.3E-61 468.8 39.7 344 102-526 4-428 (446)
16 PRK00049 elongation factor Tu; 100.0 1E-55 2.3E-60 460.0 42.8 350 102-526 9-393 (396)
17 CHL00071 tufA elongation facto 100.0 9.4E-56 2E-60 462.6 41.7 351 102-527 9-407 (409)
18 COG0050 TufB GTPases - transla 100.0 1.8E-56 3.9E-61 421.0 30.5 350 102-526 9-391 (394)
19 PRK10512 selenocysteinyl-tRNA- 100.0 1.3E-54 2.8E-59 470.8 41.1 337 107-526 2-339 (614)
20 TIGR00483 EF-1_alpha translati 100.0 2.1E-54 4.5E-59 456.1 41.0 344 102-526 4-421 (426)
21 TIGR02034 CysN sulfate adenyly 100.0 2E-52 4.4E-57 436.7 38.3 336 106-524 1-406 (406)
22 PRK05124 cysN sulfate adenylyl 100.0 3.8E-52 8.2E-57 440.9 38.8 341 103-526 25-436 (474)
23 COG2895 CysN GTPases - Sulfate 100.0 2.2E-52 4.7E-57 403.1 29.9 343 103-528 4-416 (431)
24 TIGR00475 selB selenocysteine- 100.0 2.6E-51 5.6E-56 444.1 40.3 335 106-526 1-337 (581)
25 COG5258 GTPBP1 GTPase [General 100.0 5.6E-52 1.2E-56 403.0 27.4 366 103-526 115-525 (527)
26 PRK05506 bifunctional sulfate 100.0 3.4E-50 7.4E-55 442.6 40.0 342 103-527 22-433 (632)
27 COG3276 SelB Selenocysteine-sp 100.0 3.2E-50 6.9E-55 401.7 31.5 337 107-526 2-338 (447)
28 KOG0458 Elongation factor 1 al 100.0 2.4E-48 5.2E-53 397.8 32.5 344 102-526 174-600 (603)
29 KOG0463 GTP-binding protein GP 100.0 7E-49 1.5E-53 379.8 26.0 368 105-527 133-546 (641)
30 KOG0459 Polypeptide release fa 100.0 8.8E-45 1.9E-49 355.2 22.2 342 102-526 76-498 (501)
31 KOG1143 Predicted translation 100.0 1.3E-42 2.8E-47 336.2 22.9 363 105-526 167-581 (591)
32 KOG0461 Selenocysteine-specifi 100.0 6.3E-37 1.4E-41 294.1 24.9 314 104-487 6-332 (522)
33 TIGR01394 TypA_BipA GTP-bindin 100.0 5.6E-35 1.2E-39 316.0 28.2 257 106-428 2-289 (594)
34 KOG0462 Elongation factor-type 100.0 9E-36 1.9E-40 302.2 17.6 215 103-366 58-284 (650)
35 COG0481 LepA Membrane GTPase L 100.0 2.6E-35 5.7E-40 294.2 18.8 219 103-368 7-237 (603)
36 TIGR01393 lepA GTP-binding pro 100.0 1.3E-33 2.9E-38 306.2 28.9 261 104-428 2-278 (595)
37 PRK05433 GTP-binding protein L 100.0 5.1E-33 1.1E-37 301.9 30.3 262 103-428 5-282 (600)
38 COG1217 TypA Predicted membran 100.0 1.8E-33 3.8E-38 280.3 22.9 258 104-427 4-292 (603)
39 PRK10218 GTP-binding protein; 100.0 1E-32 2.2E-37 297.9 27.8 258 104-427 4-292 (607)
40 TIGR00487 IF-2 translation ini 100.0 5.1E-30 1.1E-34 276.8 27.9 235 104-404 86-325 (587)
41 PRK05306 infB translation init 100.0 5.8E-30 1.3E-34 282.2 26.3 235 103-404 288-527 (787)
42 CHL00189 infB translation init 100.0 6.5E-29 1.4E-33 271.5 26.6 239 103-404 242-485 (742)
43 KOG1145 Mitochondrial translat 100.0 1.4E-29 2.9E-34 257.1 19.6 233 105-404 153-391 (683)
44 COG0532 InfB Translation initi 100.0 1.1E-28 2.3E-33 253.8 20.6 235 106-404 6-245 (509)
45 PRK00007 elongation factor G; 100.0 4.6E-28 1E-32 269.1 25.6 255 103-426 8-393 (693)
46 TIGR00491 aIF-2 translation in 100.0 1.1E-27 2.5E-32 258.0 27.8 241 106-390 5-283 (590)
47 PRK12739 elongation factor G; 100.0 5.3E-28 1.2E-32 268.7 25.3 255 103-426 6-390 (691)
48 PF00009 GTP_EFTU: Elongation 100.0 4.8E-29 1E-33 234.4 14.1 169 103-310 1-188 (188)
49 PRK07560 elongation factor EF- 100.0 5.7E-28 1.2E-32 269.8 25.3 261 103-427 18-375 (731)
50 PRK04004 translation initiatio 100.0 3.4E-27 7.4E-32 255.5 29.0 255 106-404 7-311 (586)
51 cd01888 eIF2_gamma eIF2-gamma 100.0 1.4E-27 3.1E-32 227.0 22.2 202 106-312 1-202 (203)
52 cd01884 EF_Tu EF-Tu subfamily. 100.0 6.6E-28 1.4E-32 227.0 18.5 168 105-311 2-195 (195)
53 PRK00741 prfC peptide chain re 100.0 6.9E-27 1.5E-31 250.1 27.5 243 103-404 8-364 (526)
54 TIGR00484 EF-G translation elo 100.0 5.2E-27 1.1E-31 261.0 26.9 259 103-427 8-392 (689)
55 TIGR00503 prfC peptide chain r 100.0 1.6E-26 3.5E-31 247.3 27.2 242 103-404 9-365 (527)
56 PRK13351 elongation factor G; 100.0 6.6E-27 1.4E-31 260.8 24.1 258 103-426 6-389 (687)
57 COG0480 FusA Translation elong 99.9 1.5E-26 3.3E-31 251.4 23.9 241 103-404 8-376 (697)
58 COG4108 PrfC Peptide chain rel 99.9 1.8E-26 3.8E-31 229.4 17.2 255 104-414 11-380 (528)
59 PRK12740 elongation factor G; 99.9 6.7E-26 1.5E-30 252.3 23.4 250 111-426 1-372 (668)
60 TIGR00490 aEF-2 translation el 99.9 1.1E-25 2.4E-30 250.8 22.7 261 103-427 17-374 (720)
61 cd04165 GTPBP1_like GTPBP1-lik 99.9 4.2E-25 9.1E-30 212.4 18.1 188 107-311 1-224 (224)
62 PRK14845 translation initiatio 99.9 8.6E-24 1.9E-28 237.9 25.7 244 118-405 474-767 (1049)
63 cd04171 SelB SelB subfamily. 99.9 5.3E-24 1.1E-28 194.6 19.2 162 106-305 1-162 (164)
64 cd04166 CysN_ATPS CysN_ATPS su 99.9 2.4E-24 5.1E-29 205.7 17.3 153 107-298 1-183 (208)
65 cd01889 SelB_euk SelB subfamil 99.9 3.9E-24 8.4E-29 201.7 18.0 181 106-312 1-189 (192)
66 PTZ00416 elongation factor 2; 99.9 4.6E-23 1E-27 232.6 26.9 144 103-276 17-183 (836)
67 PLN00116 translation elongatio 99.9 3.4E-23 7.4E-28 234.1 25.8 147 103-273 17-186 (843)
68 cd01883 EF1_alpha Eukaryotic e 99.9 6.2E-24 1.4E-28 204.4 16.0 162 107-306 1-214 (219)
69 COG0486 ThdF Predicted GTPase 99.9 1E-24 2.2E-29 221.6 5.1 155 103-310 215-377 (454)
70 COG1159 Era GTPase [General fu 99.9 2.8E-22 6E-27 193.2 17.1 158 106-310 7-173 (298)
71 cd01890 LepA LepA subfamily. 99.9 5.2E-22 1.1E-26 184.6 16.8 167 106-311 1-179 (179)
72 cd01886 EF-G Elongation factor 99.9 3.9E-22 8.6E-27 197.0 16.3 115 107-261 1-130 (270)
73 cd01885 EF2 EF2 (for archaea a 99.9 7.6E-22 1.6E-26 189.0 16.8 176 106-311 1-222 (222)
74 KOG0465 Mitochondrial elongati 99.9 1.4E-22 3E-27 208.6 12.0 238 104-404 38-406 (721)
75 KOG0469 Elongation factor 2 [T 99.9 2.1E-22 4.5E-27 202.2 12.6 271 102-404 16-456 (842)
76 COG1160 Predicted GTPases [Gen 99.9 4.8E-22 1E-26 201.7 14.8 160 104-307 177-349 (444)
77 cd04168 TetM_like Tet(M)-like 99.9 7.1E-22 1.5E-26 191.8 15.1 164 107-311 1-237 (237)
78 COG1160 Predicted GTPases [Gen 99.9 1.9E-21 4.2E-26 197.3 16.8 153 106-309 4-165 (444)
79 cd00881 GTP_translation_factor 99.9 3.5E-21 7.6E-26 180.1 16.3 165 107-311 1-189 (189)
80 cd01891 TypA_BipA TypA (tyrosi 99.9 1.1E-20 2.4E-25 178.5 17.0 166 105-311 2-194 (194)
81 KOG0052 Translation elongation 99.9 4.5E-22 9.8E-27 197.7 7.3 306 103-526 5-370 (391)
82 cd04169 RF3 RF3 subfamily. Pe 99.9 1.2E-20 2.6E-25 186.2 16.4 118 105-262 2-138 (267)
83 PF02421 FeoB_N: Ferrous iron 99.8 2.8E-21 6.1E-26 173.4 10.2 148 106-304 1-156 (156)
84 TIGR00436 era GTP-binding prot 99.8 3.1E-20 6.7E-25 184.4 18.5 156 107-310 2-165 (270)
85 KOG1144 Translation initiation 99.8 3.9E-21 8.4E-26 200.7 12.2 226 106-364 476-737 (1064)
86 cd04167 Snu114p Snu114p subfam 99.8 5.8E-20 1.3E-24 176.2 16.0 171 106-311 1-213 (213)
87 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.9E-19 8.5E-24 163.2 17.8 160 107-307 2-164 (168)
88 cd03688 eIF2_gamma_II eIF2_gam 99.8 2.5E-19 5.4E-24 147.5 12.6 112 315-427 2-113 (113)
89 PRK05291 trmE tRNA modificatio 99.8 7.2E-21 1.6E-25 201.3 4.3 222 18-309 140-370 (449)
90 PRK15494 era GTPase Era; Provi 99.8 5.3E-19 1.1E-23 180.7 17.4 160 103-310 50-217 (339)
91 cd04170 EF-G_bact Elongation f 99.8 2.8E-19 6.1E-24 177.5 14.8 116 107-262 1-131 (268)
92 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.8E-19 3.8E-24 165.5 12.2 114 193-306 50-166 (167)
93 PRK00093 GTP-binding protein D 99.8 5.9E-19 1.3E-23 187.4 15.9 161 103-307 171-342 (435)
94 TIGR03594 GTPase_EngA ribosome 99.8 6.2E-19 1.3E-23 187.0 15.6 161 104-308 171-343 (429)
95 TIGR03156 GTP_HflX GTP-binding 99.8 1.3E-19 2.8E-24 185.5 8.7 153 104-307 188-350 (351)
96 PRK00089 era GTPase Era; Revie 99.8 3.9E-18 8.5E-23 171.5 19.3 158 106-310 6-172 (292)
97 cd01898 Obg Obg subfamily. Th 99.8 2.1E-18 4.6E-23 158.7 15.1 156 107-307 2-169 (170)
98 cd01895 EngA2 EngA2 subfamily. 99.8 3.7E-18 7.9E-23 156.9 16.2 158 105-306 2-172 (174)
99 PRK03003 GTP-binding protein D 99.8 3.2E-18 6.9E-23 182.9 17.4 162 104-309 210-382 (472)
100 TIGR03598 GTPase_YsxC ribosome 99.8 7.9E-18 1.7E-22 156.9 16.8 155 98-298 11-179 (179)
101 PRK12298 obgE GTPase CgtA; Rev 99.8 4.1E-18 8.8E-23 176.4 15.2 161 106-310 160-334 (390)
102 cd04154 Arl2 Arl2 subfamily. 99.8 5E-18 1.1E-22 157.2 14.1 156 103-306 12-172 (173)
103 PRK15467 ethanolamine utilizat 99.8 7.8E-18 1.7E-22 153.6 14.2 141 107-309 3-147 (158)
104 cd01894 EngA1 EngA1 subfamily. 99.8 1.1E-17 2.3E-22 151.5 14.8 148 109-307 1-156 (157)
105 TIGR03594 GTPase_EngA ribosome 99.8 8.8E-18 1.9E-22 178.2 16.3 154 107-311 1-162 (429)
106 TIGR02528 EutP ethanolamine ut 99.8 7.6E-18 1.7E-22 150.5 13.3 136 107-305 2-141 (142)
107 COG0218 Predicted GTPase [Gene 99.8 4.3E-17 9.4E-22 149.3 18.2 161 104-309 23-197 (200)
108 cd01864 Rab19 Rab19 subfamily. 99.8 2.3E-17 4.9E-22 151.4 16.0 160 105-307 3-164 (165)
109 cd04157 Arl6 Arl6 subfamily. 99.8 8.3E-18 1.8E-22 153.4 12.8 110 193-306 45-161 (162)
110 PRK04213 GTP-binding protein; 99.7 5.3E-17 1.1E-21 154.1 18.2 160 104-312 8-195 (201)
111 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.7E-17 3.7E-22 151.6 13.9 112 193-306 44-158 (159)
112 TIGR00450 mnmE_trmE_thdF tRNA 99.7 6.4E-19 1.4E-23 185.4 5.1 221 16-308 130-359 (442)
113 PRK03003 GTP-binding protein D 99.7 1.5E-17 3.4E-22 177.7 15.4 155 105-310 38-200 (472)
114 cd01897 NOG NOG1 is a nucleola 99.7 3.3E-17 7E-22 150.6 15.5 155 106-308 1-167 (168)
115 PF10662 PduV-EutP: Ethanolami 99.7 2.4E-17 5.1E-22 144.7 13.4 136 106-305 2-142 (143)
116 PRK12299 obgE GTPase CgtA; Rev 99.7 2.2E-17 4.7E-22 167.7 15.0 163 103-310 156-329 (335)
117 cd04145 M_R_Ras_like M-Ras/R-R 99.7 3.3E-17 7.2E-22 149.7 14.9 159 105-308 2-163 (164)
118 cd04119 RJL RJL (RabJ-Like) su 99.7 3.4E-17 7.4E-22 149.9 14.9 158 106-307 1-165 (168)
119 cd01861 Rab6 Rab6 subfamily. 99.7 4.1E-17 8.9E-22 148.7 15.3 157 107-307 2-160 (161)
120 PRK00454 engB GTP-binding prot 99.7 9.1E-17 2E-21 151.6 17.9 159 103-309 22-194 (196)
121 PRK09518 bifunctional cytidyla 99.7 3E-17 6.4E-22 183.6 16.7 162 104-309 449-621 (712)
122 cd04113 Rab4 Rab4 subfamily. 99.7 3.9E-17 8.5E-22 149.0 14.6 158 106-307 1-160 (161)
123 cd04151 Arl1 Arl1 subfamily. 99.7 1.9E-17 4.1E-22 150.8 12.2 110 193-306 43-157 (158)
124 cd04124 RabL2 RabL2 subfamily. 99.7 7.1E-17 1.5E-21 147.7 15.7 156 106-308 1-157 (161)
125 cd01865 Rab3 Rab3 subfamily. 99.7 4.6E-17 1E-21 149.4 14.4 158 106-308 2-162 (165)
126 TIGR02729 Obg_CgtA Obg family 99.7 4.3E-17 9.2E-22 165.5 15.5 160 103-308 155-328 (329)
127 cd00878 Arf_Arl Arf (ADP-ribos 99.7 2.9E-17 6.2E-22 149.4 12.7 154 107-306 1-157 (158)
128 cd04149 Arf6 Arf6 subfamily. 99.7 3.4E-17 7.5E-22 150.9 13.3 155 104-306 8-167 (168)
129 KOG1191 Mitochondrial GTPase [ 99.7 5.4E-18 1.2E-22 172.0 8.5 163 103-308 266-449 (531)
130 cd01867 Rab8_Rab10_Rab13_like 99.7 4.4E-17 9.5E-22 149.9 13.9 160 105-308 3-164 (167)
131 cd01860 Rab5_related Rab5-rela 99.7 6.2E-17 1.3E-21 147.8 14.7 160 106-309 2-163 (163)
132 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5.3E-17 1.1E-21 146.8 13.6 147 106-308 2-156 (157)
133 cd04138 H_N_K_Ras_like H-Ras/N 99.7 6.1E-17 1.3E-21 147.3 14.1 155 106-307 2-160 (162)
134 cd01879 FeoB Ferrous iron tran 99.7 2.9E-17 6.4E-22 149.0 11.9 147 110-307 1-155 (158)
135 smart00175 RAB Rab subfamily o 99.7 7.3E-17 1.6E-21 147.3 14.5 159 106-309 1-162 (164)
136 cd01878 HflX HflX subfamily. 99.7 1.1E-16 2.4E-21 152.3 16.2 155 103-307 39-203 (204)
137 KOG0468 U5 snRNP-specific prot 99.7 3.4E-16 7.3E-21 162.5 20.8 123 103-260 126-262 (971)
138 cd01862 Rab7 Rab7 subfamily. 99.7 1.1E-16 2.3E-21 147.5 15.7 159 106-308 1-166 (172)
139 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 6.8E-17 1.5E-21 148.3 14.1 159 106-308 3-163 (166)
140 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 5.2E-17 1.1E-21 150.6 13.5 155 104-306 14-173 (174)
141 KOG0464 Elongation factor G [T 99.7 1.3E-18 2.8E-23 171.6 2.7 212 104-361 36-369 (753)
142 cd04106 Rab23_lke Rab23-like s 99.7 1.1E-16 2.3E-21 146.1 15.2 159 106-307 1-161 (162)
143 KOG0467 Translation elongation 99.7 6.7E-16 1.4E-20 163.1 22.5 117 103-259 7-136 (887)
144 cd01868 Rab11_like Rab11-like. 99.7 1.1E-16 2.3E-21 146.8 14.6 159 106-308 4-164 (165)
145 cd00154 Rab Rab family. Rab G 99.7 1.8E-16 4E-21 143.0 15.9 156 106-305 1-158 (159)
146 cd04158 ARD1 ARD1 subfamily. 99.7 3E-17 6.5E-22 151.4 10.9 155 107-309 1-161 (169)
147 cd04109 Rab28 Rab28 subfamily. 99.7 9.8E-17 2.1E-21 154.0 14.8 161 106-309 1-166 (215)
148 cd04156 ARLTS1 ARLTS1 subfamil 99.7 5.9E-17 1.3E-21 147.6 12.7 110 193-306 44-159 (160)
149 PRK00093 GTP-binding protein D 99.7 6.4E-17 1.4E-21 171.9 14.9 153 106-309 2-162 (435)
150 cd04140 ARHI_like ARHI subfami 99.7 1.3E-16 2.9E-21 146.4 14.6 156 106-306 2-162 (165)
151 cd01893 Miro1 Miro1 subfamily. 99.7 1.9E-16 4E-21 145.6 15.6 114 193-308 47-163 (166)
152 cd01863 Rab18 Rab18 subfamily. 99.7 1.7E-16 3.6E-21 144.8 15.0 156 106-307 1-160 (161)
153 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.4E-16 3.1E-21 147.1 14.5 160 107-308 2-164 (170)
154 cd04101 RabL4 RabL4 (Rab-like4 99.7 2.3E-16 4.9E-21 144.3 15.4 110 193-308 52-163 (164)
155 smart00178 SAR Sar1p-like memb 99.7 1.1E-16 2.3E-21 150.0 13.4 156 104-307 16-183 (184)
156 cd04163 Era Era subfamily. Er 99.7 5.3E-16 1.1E-20 141.2 17.7 156 105-307 3-167 (168)
157 cd04136 Rap_like Rap-like subf 99.7 1.5E-16 3.2E-21 145.3 13.9 111 193-308 49-162 (163)
158 cd04127 Rab27A Rab27a subfamil 99.7 2.5E-16 5.4E-21 146.5 15.5 169 105-307 4-175 (180)
159 cd04116 Rab9 Rab9 subfamily. 99.7 4E-16 8.6E-21 143.7 16.7 160 104-307 4-169 (170)
160 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.6E-16 3.5E-21 150.9 14.5 162 106-309 1-168 (201)
161 smart00173 RAS Ras subfamily o 99.7 1.5E-16 3.1E-21 145.6 13.7 112 193-309 48-162 (164)
162 cd04122 Rab14 Rab14 subfamily. 99.7 1.7E-16 3.7E-21 145.8 14.1 158 106-307 3-162 (166)
163 PRK12296 obgE GTPase CgtA; Rev 99.7 1.5E-16 3.2E-21 167.6 15.4 160 103-309 157-340 (500)
164 smart00177 ARF ARF-like small 99.7 1.8E-16 3.9E-21 147.1 14.2 156 104-308 12-173 (175)
165 PLN00223 ADP-ribosylation fact 99.7 1.4E-16 3E-21 148.8 13.3 157 104-308 16-177 (181)
166 cd04155 Arl3 Arl3 subfamily. 99.7 1.2E-16 2.5E-21 147.7 12.6 155 104-306 13-172 (173)
167 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.7E-16 3.7E-21 148.4 13.6 161 105-309 3-170 (183)
168 PRK09518 bifunctional cytidyla 99.7 1.6E-16 3.6E-21 177.6 16.0 157 103-310 273-437 (712)
169 cd04114 Rab30 Rab30 subfamily. 99.7 3.6E-16 7.8E-21 143.8 15.6 158 104-307 6-167 (169)
170 cd00879 Sar1 Sar1 subfamily. 99.7 1.7E-16 3.7E-21 149.1 13.7 156 104-307 18-189 (190)
171 cd04139 RalA_RalB RalA/RalB su 99.7 2.7E-16 5.8E-21 143.5 14.6 111 193-308 48-161 (164)
172 cd04120 Rab12 Rab12 subfamily. 99.7 2.2E-16 4.8E-21 149.7 14.4 159 107-308 2-162 (202)
173 cd04112 Rab26 Rab26 subfamily. 99.7 2.3E-16 5.1E-21 148.5 14.6 113 193-310 50-164 (191)
174 cd01866 Rab2 Rab2 subfamily. 99.7 2.7E-16 5.8E-21 144.8 14.6 160 105-308 4-165 (168)
175 PTZ00133 ADP-ribosylation fact 99.7 2E-16 4.4E-21 147.8 13.9 158 103-308 15-177 (182)
176 PRK11058 GTPase HflX; Provisio 99.7 1.7E-16 3.7E-21 166.2 14.6 154 106-309 198-362 (426)
177 KOG1423 Ras-like GTPase ERA [C 99.7 4.8E-16 1E-20 149.0 15.3 167 103-310 70-272 (379)
178 cd00877 Ran Ran (Ras-related n 99.7 2E-16 4.3E-21 145.5 12.4 157 106-309 1-159 (166)
179 cd04110 Rab35 Rab35 subfamily. 99.7 4.2E-16 9E-21 147.8 14.7 162 104-309 5-167 (199)
180 cd04159 Arl10_like Arl10-like 99.7 2E-16 4.3E-21 142.9 11.7 112 193-306 44-158 (159)
181 cd04175 Rap1 Rap1 subgroup. T 99.7 4.3E-16 9.3E-21 142.6 14.0 110 193-308 49-162 (164)
182 cd01881 Obg_like The Obg-like 99.7 2.9E-16 6.3E-21 145.1 12.8 110 193-307 44-175 (176)
183 TIGR00231 small_GTP small GTP- 99.7 2.7E-16 5.9E-21 141.4 11.8 152 106-305 2-160 (161)
184 cd04123 Rab21 Rab21 subfamily. 99.7 7.1E-16 1.5E-20 140.3 14.7 158 106-307 1-160 (162)
185 PRK09554 feoB ferrous iron tra 99.7 4.2E-16 9.1E-21 173.7 15.8 152 106-308 4-167 (772)
186 cd04176 Rap2 Rap2 subgroup. T 99.7 4.6E-16 9.9E-21 142.2 13.3 110 193-308 49-162 (163)
187 cd04128 Spg1 Spg1p. Spg1p (se 99.7 7.9E-16 1.7E-20 143.8 15.0 160 106-308 1-165 (182)
188 cd04121 Rab40 Rab40 subfamily. 99.7 6.3E-16 1.4E-20 145.1 14.4 161 104-308 5-166 (189)
189 cd04147 Ras_dva Ras-dva subfam 99.7 4.4E-16 9.6E-21 147.5 13.5 115 193-310 47-164 (198)
190 cd04144 Ras2 Ras2 subfamily. 99.7 2.6E-16 5.6E-21 148.1 11.8 112 193-309 47-163 (190)
191 cd00876 Ras Ras family. The R 99.7 7.6E-16 1.6E-20 139.8 14.3 110 193-307 47-159 (160)
192 cd01882 BMS1 Bms1. Bms1 is an 99.7 3.9E-15 8.5E-20 143.7 20.0 179 103-330 37-222 (225)
193 cd04142 RRP22 RRP22 subfamily. 99.7 9.5E-16 2.1E-20 145.1 15.1 160 106-309 1-174 (198)
194 PTZ00369 Ras-like protein; Pro 99.7 5.6E-16 1.2E-20 145.7 13.3 160 105-309 5-167 (189)
195 cd04161 Arl2l1_Arl13_like Arl2 99.7 4.5E-16 9.8E-21 143.3 12.4 155 107-306 1-166 (167)
196 PRK12297 obgE GTPase CgtA; Rev 99.7 3.9E-16 8.6E-21 162.4 13.1 155 106-309 159-327 (424)
197 cd00157 Rho Rho (Ras homology) 99.7 6.1E-16 1.3E-20 142.3 12.9 158 106-306 1-170 (171)
198 cd04118 Rab24 Rab24 subfamily. 99.7 7.1E-16 1.5E-20 145.3 13.5 162 106-308 1-165 (193)
199 cd04143 Rhes_like Rhes_like su 99.7 8.2E-16 1.8E-20 150.3 14.1 116 193-312 48-174 (247)
200 cd04126 Rab20 Rab20 subfamily. 99.7 5.8E-16 1.3E-20 148.6 12.6 159 106-308 1-189 (220)
201 PLN03110 Rab GTPase; Provision 99.7 1.6E-15 3.4E-20 145.8 15.0 161 104-309 11-174 (216)
202 cd04125 RabA_like RabA-like su 99.7 1.6E-15 3.5E-20 142.3 14.7 160 106-309 1-162 (188)
203 cd04115 Rab33B_Rab33A Rab33B/R 99.7 2.1E-15 4.5E-20 139.1 15.3 160 105-308 2-168 (170)
204 cd01874 Cdc42 Cdc42 subfamily. 99.7 1.2E-15 2.5E-20 141.7 13.6 159 106-306 2-172 (175)
205 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 1.2E-15 2.6E-20 141.2 13.6 158 106-308 3-163 (172)
206 COG2262 HflX GTPases [General 99.7 2E-16 4.3E-21 158.6 8.8 201 52-309 146-356 (411)
207 cd04111 Rab39 Rab39 subfamily. 99.7 1.7E-15 3.7E-20 144.9 14.9 161 106-309 3-166 (211)
208 KOG0092 GTPase Rab5/YPT51 and 99.7 6.7E-16 1.5E-20 139.0 11.1 165 104-312 4-170 (200)
209 PLN03118 Rab family protein; P 99.7 1.5E-15 3.2E-20 145.4 14.3 160 104-309 13-177 (211)
210 cd01892 Miro2 Miro2 subfamily. 99.7 7E-16 1.5E-20 142.3 11.6 161 103-308 2-165 (169)
211 cd04134 Rho3 Rho3 subfamily. 99.7 2E-15 4.4E-20 141.9 14.9 163 106-311 1-176 (189)
212 cd03693 EF1_alpha_II EF1_alpha 99.6 9.7E-16 2.1E-20 125.9 10.6 89 316-428 2-90 (91)
213 cd04117 Rab15 Rab15 subfamily. 99.6 3.3E-15 7.2E-20 136.6 15.1 158 106-307 1-160 (161)
214 PLN03071 GTP-binding nuclear p 99.6 1.6E-15 3.5E-20 145.9 13.7 160 104-309 12-172 (219)
215 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.6E-15 3.4E-20 139.2 12.9 110 193-305 44-162 (164)
216 PLN03108 Rab family protein; P 99.6 2.2E-15 4.8E-20 144.1 14.2 161 104-308 5-167 (210)
217 COG1084 Predicted GTPase [Gene 99.6 2.3E-15 5.1E-20 146.5 14.3 155 105-307 168-334 (346)
218 cd01871 Rac1_like Rac1-like su 99.6 2.6E-15 5.6E-20 139.2 14.2 158 106-306 2-172 (174)
219 cd00880 Era_like Era (E. coli 99.6 4.6E-15 9.9E-20 133.5 15.3 111 193-307 45-162 (163)
220 cd01876 YihA_EngB The YihA (En 99.6 9.8E-15 2.1E-19 133.2 17.5 111 194-307 46-169 (170)
221 cd04177 RSR1 RSR1 subgroup. R 99.6 2.8E-15 6.1E-20 138.0 13.9 159 106-308 2-163 (168)
222 cd04135 Tc10 TC10 subfamily. 99.6 2.3E-15 5E-20 139.1 13.4 112 193-307 48-172 (174)
223 cd01896 DRG The developmentall 99.6 4.5E-15 9.8E-20 144.0 15.6 148 107-309 2-226 (233)
224 cd04132 Rho4_like Rho4-like su 99.6 4E-15 8.7E-20 139.4 14.7 162 106-309 1-167 (187)
225 COG0370 FeoB Fe2+ transport sy 99.6 1.7E-15 3.7E-20 160.9 12.8 154 106-310 4-165 (653)
226 cd04137 RheB Rheb (Ras Homolog 99.6 3.7E-15 8E-20 138.7 13.8 158 106-309 2-163 (180)
227 cd04133 Rop_like Rop subfamily 99.6 2.9E-15 6.3E-20 139.0 12.9 160 106-308 2-172 (176)
228 cd01870 RhoA_like RhoA-like su 99.6 4.5E-15 9.8E-20 137.3 13.8 160 106-307 2-173 (175)
229 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 1.4E-14 3E-19 130.4 15.9 162 106-311 23-187 (221)
230 smart00174 RHO Rho (Ras homolo 99.6 3.7E-15 8E-20 137.8 12.7 113 193-308 46-171 (174)
231 cd04146 RERG_RasL11_like RERG/ 99.6 2.9E-15 6.3E-20 137.3 11.1 111 193-308 47-163 (165)
232 cd01875 RhoG RhoG subfamily. 99.6 7.1E-15 1.5E-19 138.4 14.0 163 106-311 4-179 (191)
233 KOG1489 Predicted GTP-binding 99.6 7.8E-15 1.7E-19 141.6 13.1 157 103-306 194-364 (366)
234 PF00025 Arf: ADP-ribosylation 99.6 9.1E-15 2E-19 135.7 13.1 158 102-307 11-174 (175)
235 PRK09866 hypothetical protein; 99.6 2.5E-14 5.5E-19 151.2 17.7 114 193-307 230-351 (741)
236 COG2229 Predicted GTPase [Gene 99.6 4.6E-14 1E-18 126.6 16.7 160 105-307 10-176 (187)
237 cd04148 RGK RGK subfamily. Th 99.6 1E-14 2.2E-19 140.6 13.3 110 193-309 50-163 (221)
238 cd04130 Wrch_1 Wrch-1 subfamil 99.6 8.8E-15 1.9E-19 135.4 12.3 110 193-305 48-170 (173)
239 cd04104 p47_IIGP_like p47 (47- 99.6 2.7E-14 6E-19 135.1 15.5 164 106-312 2-187 (197)
240 TIGR00437 feoB ferrous iron tr 99.6 9.3E-15 2E-19 159.4 13.6 146 112-308 1-154 (591)
241 KOG0394 Ras-related GTPase [Ge 99.6 1E-14 2.2E-19 130.1 11.2 164 103-308 7-177 (210)
242 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 3.5E-14 7.7E-19 132.5 15.0 161 103-306 3-177 (182)
243 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 3.8E-14 8.2E-19 136.8 15.7 159 105-307 13-186 (232)
244 smart00176 RAN Ran (Ras-relate 99.6 1.6E-14 3.6E-19 136.6 12.7 109 193-309 44-154 (200)
245 cd04131 Rnd Rnd subfamily. Th 99.6 4.1E-14 9E-19 131.6 15.0 158 106-306 2-173 (178)
246 cd03698 eRF3_II_like eRF3_II_l 99.6 1.3E-14 2.9E-19 117.1 10.1 83 318-425 1-83 (83)
247 COG1163 DRG Predicted GTPase [ 99.6 1.9E-14 4.2E-19 139.6 12.6 154 103-309 61-289 (365)
248 cd00882 Ras_like_GTPase Ras-li 99.6 2.8E-14 6.2E-19 126.7 12.7 108 193-305 45-156 (157)
249 cd03694 GTPBP_II Domain II of 99.6 1.7E-14 3.7E-19 117.4 10.2 87 319-425 1-87 (87)
250 cd04089 eRF3_II eRF3_II: domai 99.6 2.5E-14 5.4E-19 115.2 10.1 82 318-425 1-82 (82)
251 cd04103 Centaurin_gamma Centau 99.5 5E-14 1.1E-18 128.5 12.7 107 193-307 47-157 (158)
252 cd03697 EFTU_II EFTU_II: Elong 99.5 2.5E-14 5.3E-19 116.6 9.1 87 319-427 1-87 (87)
253 KOG0084 GTPase Rab1/YPT1, smal 99.5 1.1E-13 2.3E-18 125.3 13.5 162 103-308 7-171 (205)
254 KOG0098 GTPase Rab2, small G p 99.5 1.1E-13 2.5E-18 123.6 13.1 160 103-306 4-165 (216)
255 cd04129 Rho2 Rho2 subfamily. 99.5 7.4E-14 1.6E-18 131.0 12.5 113 193-308 49-172 (187)
256 COG3596 Predicted GTPase [Gene 99.5 2E-13 4.4E-18 130.1 15.3 165 102-311 36-224 (296)
257 cd04105 SR_beta Signal recogni 99.5 1.5E-13 3.3E-18 130.5 14.2 70 193-262 48-124 (203)
258 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 3.3E-13 7.1E-18 129.6 15.6 159 106-306 2-173 (222)
259 PF00071 Ras: Ras family; Int 99.5 7.8E-14 1.7E-18 127.2 10.8 110 193-307 48-159 (162)
260 cd03696 selB_II selB_II: this 99.5 1.1E-13 2.5E-18 111.7 10.0 83 319-425 1-83 (83)
261 cd01873 RhoBTB RhoBTB subfamil 99.5 3E-13 6.5E-18 127.6 14.2 109 193-306 66-193 (195)
262 KOG0078 GTP-binding protein SE 99.5 1.1E-12 2.3E-17 120.6 15.0 162 103-308 10-173 (207)
263 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 3.9E-13 8.3E-18 127.2 12.6 161 106-310 1-185 (196)
264 PTZ00132 GTP-binding nuclear p 99.5 7.3E-13 1.6E-17 127.1 14.4 159 103-309 7-168 (215)
265 PF01926 MMR_HSR1: 50S ribosom 99.5 2.8E-13 6.2E-18 116.7 9.6 107 107-256 1-116 (116)
266 COG4917 EutP Ethanolamine util 99.5 3.3E-13 7.3E-18 112.8 9.4 138 106-306 2-143 (148)
267 KOG0095 GTPase Rab30, small G 99.5 5.4E-13 1.2E-17 114.5 11.0 161 103-308 5-168 (213)
268 PF09173 eIF2_C: Initiation fa 99.4 1.1E-12 2.5E-17 104.6 11.6 88 433-524 1-88 (88)
269 KOG0073 GTP-binding ADP-ribosy 99.4 7.5E-13 1.6E-17 115.9 11.0 157 103-307 14-176 (185)
270 cd03695 CysN_NodQ_II CysN_NodQ 99.4 8.9E-13 1.9E-17 105.7 10.3 81 319-425 1-81 (81)
271 COG0536 Obg Predicted GTPase [ 99.4 1.2E-12 2.6E-17 128.3 12.6 159 106-309 160-333 (369)
272 KOG0080 GTPase Rab18, small G 99.4 2E-12 4.3E-17 112.6 10.5 163 105-311 11-177 (209)
273 cd01899 Ygr210 Ygr210 subfamil 99.4 6E-12 1.3E-16 126.9 15.7 55 248-310 215-270 (318)
274 cd01850 CDC_Septin CDC/Septin. 99.4 4.1E-11 8.8E-16 119.1 19.9 148 105-291 4-184 (276)
275 PF03143 GTP_EFTU_D3: Elongati 99.4 6.7E-12 1.5E-16 104.8 11.6 80 429-526 1-97 (99)
276 KOG0075 GTP-binding ADP-ribosy 99.4 1.6E-12 3.4E-17 111.6 7.8 159 104-308 19-181 (186)
277 KOG0093 GTPase Rab3, small G p 99.3 9.3E-12 2E-16 106.9 10.5 159 106-309 22-183 (193)
278 KOG0087 GTPase Rab11/YPT3, sma 99.3 9.3E-12 2E-16 113.9 10.5 160 103-306 12-173 (222)
279 COG1100 GTPase SAR1 and relate 99.3 3.4E-11 7.5E-16 115.6 15.0 165 106-309 6-185 (219)
280 PRK09435 membrane ATPase/prote 99.3 1.7E-11 3.8E-16 123.7 12.8 108 193-309 149-260 (332)
281 KOG0076 GTP-binding ADP-ribosy 99.3 5.7E-12 1.2E-16 111.5 7.9 174 101-311 13-189 (197)
282 PF09439 SRPRB: Signal recogni 99.3 9.8E-12 2.1E-16 114.3 9.8 69 193-263 49-128 (181)
283 COG5192 BMS1 GTP-binding prote 99.3 8.9E-11 1.9E-15 120.5 17.5 211 103-361 67-287 (1077)
284 KOG0086 GTPase Rab4, small G p 99.3 7.3E-11 1.6E-15 102.0 13.2 156 105-304 9-166 (214)
285 cd04094 selB_III This family r 99.3 4.6E-11 9.9E-16 99.4 11.5 89 420-524 1-97 (97)
286 PRK09602 translation-associate 99.3 7.5E-11 1.6E-15 122.6 14.7 54 248-310 218-272 (396)
287 KOG0090 Signal recognition par 99.2 7.7E-11 1.7E-15 108.2 12.0 156 105-307 38-237 (238)
288 cd04102 RabL3 RabL3 (Rab-like3 99.2 1.7E-10 3.7E-15 109.3 14.9 153 106-295 1-176 (202)
289 PRK13768 GTPase; Provisional 99.2 1.2E-10 2.7E-15 114.3 14.4 115 193-310 97-248 (253)
290 KOG0079 GTP-binding protein H- 99.2 8.8E-11 1.9E-15 101.0 11.4 159 106-308 9-168 (198)
291 PF08477 Miro: Miro-like prote 99.2 7.9E-12 1.7E-16 107.9 5.1 114 107-258 1-119 (119)
292 cd03706 mtEFTU_III Domain III 99.2 1.5E-10 3.2E-15 95.6 11.7 81 433-526 3-92 (93)
293 KOG0070 GTP-binding ADP-ribosy 99.2 2.8E-11 6E-16 109.1 7.7 160 103-309 15-178 (181)
294 PF05049 IIGP: Interferon-indu 99.2 9.8E-11 2.1E-15 119.0 12.4 167 103-312 33-221 (376)
295 KOG1490 GTP-binding protein CR 99.2 4.3E-11 9.3E-16 122.0 9.5 151 104-298 167-330 (620)
296 PTZ00258 GTP-binding protein; 99.2 1.7E-10 3.7E-15 118.6 14.0 93 103-227 19-126 (390)
297 PTZ00099 rab6; Provisional 99.2 5.4E-11 1.2E-15 110.4 9.4 114 193-311 29-144 (176)
298 KOG0088 GTPase Rab21, small G 99.2 1E-10 2.2E-15 101.7 8.3 158 104-306 12-172 (218)
299 cd03708 GTPBP_III Domain III o 99.2 2.6E-10 5.7E-15 92.9 10.3 76 432-526 2-86 (87)
300 KOG0091 GTPase Rab39, small G 99.2 9.4E-10 2E-14 96.4 14.0 110 193-307 58-171 (213)
301 PLN00023 GTP-binding protein; 99.1 2.6E-10 5.7E-15 113.7 11.8 70 193-262 83-166 (334)
302 cd03704 eRF3c_III This family 99.1 3.1E-10 6.6E-15 96.5 10.4 78 432-526 2-107 (108)
303 cd03707 EFTU_III Domain III of 99.1 4.1E-10 8.8E-15 92.4 10.7 79 433-524 3-90 (90)
304 TIGR02836 spore_IV_A stage IV 99.1 4.4E-10 9.6E-15 113.7 12.1 180 103-310 15-238 (492)
305 cd01853 Toc34_like Toc34-like 99.1 2.3E-09 4.9E-14 104.8 15.8 119 103-261 29-163 (249)
306 TIGR00750 lao LAO/AO transport 99.1 1.4E-09 3.1E-14 109.6 14.8 108 192-308 126-237 (300)
307 KOG0081 GTPase Rab27, small G 99.1 2.2E-10 4.8E-15 99.7 7.4 108 193-305 67-177 (219)
308 cd03705 EF1_alpha_III Domain I 99.1 5.1E-10 1.1E-14 94.5 9.0 74 433-524 3-104 (104)
309 cd04093 HBS1_C HBS1_C: this fa 99.1 9.2E-10 2E-14 93.4 10.6 77 432-526 2-106 (107)
310 KOG0395 Ras-related GTPase [Ge 99.1 8.4E-10 1.8E-14 103.9 10.9 161 105-310 3-166 (196)
311 KOG0097 GTPase Rab14, small G 99.1 1.8E-09 4E-14 92.0 11.6 151 103-301 9-165 (215)
312 KOG0410 Predicted GTP binding 99.1 4.4E-10 9.6E-15 109.1 8.8 152 103-309 176-341 (410)
313 cd01513 Translation_factor_III 99.1 1E-09 2.2E-14 92.2 10.0 74 433-524 3-102 (102)
314 TIGR00073 hypB hydrogenase acc 99.0 1.4E-09 3E-14 103.8 9.5 101 193-307 103-205 (207)
315 KOG2486 Predicted GTPase [Gene 99.0 1.4E-09 3E-14 103.9 8.7 161 102-305 133-312 (320)
316 KOG0074 GTP-binding ADP-ribosy 99.0 1.3E-09 2.7E-14 93.3 7.5 161 103-308 15-178 (185)
317 KOG1486 GTP-binding protein DR 99.0 2.6E-09 5.7E-14 100.2 10.2 86 103-229 60-152 (364)
318 PF00350 Dynamin_N: Dynamin fa 99.0 1.7E-09 3.7E-14 99.3 8.8 64 193-257 101-168 (168)
319 PF03308 ArgK: ArgK protein; 99.0 3E-09 6.6E-14 101.9 10.2 104 193-307 122-228 (266)
320 PRK10463 hydrogenase nickel in 99.0 1.7E-09 3.6E-14 106.7 8.2 52 250-306 233-286 (290)
321 KOG1532 GTPase XAB1, interacts 98.9 7.6E-09 1.6E-13 98.5 11.8 114 193-309 116-264 (366)
322 PF04548 AIG1: AIG1 family; I 98.9 9.6E-09 2.1E-13 98.3 12.9 159 106-308 1-185 (212)
323 PF00735 Septin: Septin; Inte 98.9 4.9E-08 1.1E-12 97.0 17.7 137 105-279 4-174 (281)
324 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 2.5E-08 5.5E-13 95.8 14.9 158 107-305 1-172 (232)
325 TIGR00991 3a0901s02IAP34 GTP-b 98.9 2.1E-08 4.5E-13 99.6 14.2 119 103-261 36-167 (313)
326 TIGR00101 ureG urease accessor 98.9 9.1E-09 2E-13 97.3 11.2 102 193-308 92-195 (199)
327 KOG4252 GTP-binding protein [S 98.9 1.2E-09 2.7E-14 97.0 4.5 158 105-308 20-180 (246)
328 cd04095 CysN_NoDQ_III TCysN_No 98.9 8.5E-09 1.8E-13 86.8 9.5 76 432-524 2-103 (103)
329 KOG0071 GTP-binding ADP-ribosy 98.9 2E-08 4.4E-13 85.9 11.0 157 105-309 17-178 (180)
330 PF03029 ATP_bind_1: Conserved 98.8 5.4E-09 1.2E-13 101.5 7.4 111 193-307 91-235 (238)
331 cd03692 mtIF2_IVc mtIF2_IVc: t 98.8 3.3E-08 7.1E-13 79.8 10.8 80 321-423 3-82 (84)
332 smart00053 DYNc Dynamin, GTPas 98.8 2.8E-08 6.1E-13 96.1 12.1 68 193-262 125-207 (240)
333 KOG0083 GTPase Rab26/Rab37, sm 98.8 1.9E-09 4.2E-14 91.1 3.1 110 193-308 47-159 (192)
334 COG0378 HypB Ni2+-binding GTPa 98.8 1.6E-08 3.5E-13 92.4 8.3 96 193-307 97-199 (202)
335 KOG0072 GTP-binding ADP-ribosy 98.8 1.4E-08 3E-13 87.3 6.7 114 193-309 62-179 (182)
336 cd01900 YchF YchF subfamily. 98.8 1.5E-08 3.3E-13 99.9 7.1 36 193-228 62-104 (274)
337 COG1703 ArgK Putative periplas 98.7 1.2E-07 2.6E-12 92.1 12.7 108 193-309 144-254 (323)
338 PRK09601 GTP-binding protein Y 98.7 2.3E-08 5E-13 101.8 8.0 90 106-227 3-107 (364)
339 cd01859 MJ1464 MJ1464. This f 98.7 7.9E-08 1.7E-12 87.3 10.6 90 211-309 7-96 (156)
340 cd01856 YlqF YlqF. Proteins o 98.7 5.5E-08 1.2E-12 89.8 9.5 99 200-309 2-101 (171)
341 COG0012 Predicted GTPase, prob 98.7 1.7E-07 3.7E-12 94.2 12.8 36 193-228 67-109 (372)
342 KOG0077 Vesicle coat complex C 98.7 9.7E-08 2.1E-12 84.3 9.2 116 104-263 19-137 (193)
343 cd01858 NGP_1 NGP-1. Autoanti 98.7 8.1E-08 1.8E-12 87.3 8.6 92 210-308 2-94 (157)
344 TIGR00993 3a0901s04IAP86 chlor 98.6 2.1E-07 4.6E-12 99.7 12.3 118 104-261 117-250 (763)
345 TIGR03596 GTPase_YlqF ribosome 98.6 1.4E-07 3.1E-12 94.0 10.3 99 201-310 5-104 (276)
346 KOG0393 Ras-related small GTPa 98.6 4.6E-08 1E-12 90.5 6.0 160 105-306 4-176 (198)
347 KOG1487 GTP-binding protein DR 98.6 6E-08 1.3E-12 91.6 6.8 83 106-229 60-149 (358)
348 cd01855 YqeH YqeH. YqeH is an 98.6 2.3E-07 5.1E-12 87.1 9.8 105 201-309 19-125 (190)
349 PF03144 GTP_EFTU_D2: Elongati 98.6 2.4E-07 5.1E-12 72.9 8.1 73 341-424 1-74 (74)
350 COG5019 CDC3 Septin family pro 98.6 2E-06 4.4E-11 86.0 16.5 144 103-287 21-199 (373)
351 KOG3883 Ras family small GTPas 98.5 1.9E-06 4.1E-11 75.1 13.1 165 105-313 9-179 (198)
352 cd01342 Translation_Factor_II_ 98.5 8.4E-07 1.8E-11 70.3 10.3 82 319-424 1-82 (83)
353 KOG1547 Septin CDC10 and relat 98.5 2.7E-06 5.8E-11 79.8 14.7 147 100-278 41-215 (336)
354 cd01849 YlqF_related_GTPase Yl 98.5 5.5E-07 1.2E-11 81.7 9.5 83 218-308 1-84 (155)
355 KOG1707 Predicted Ras related/ 98.5 4E-07 8.6E-12 95.3 9.5 158 103-308 7-174 (625)
356 PRK09563 rbgA GTPase YlqF; Rev 98.5 4E-07 8.6E-12 91.3 9.3 100 200-310 7-107 (287)
357 cd01858 NGP_1 NGP-1. Autoanti 98.5 1.5E-07 3.3E-12 85.6 5.2 25 104-128 101-125 (157)
358 KOG1673 Ras GTPases [General f 98.4 9E-07 2E-11 77.2 8.3 162 105-308 20-185 (205)
359 cd04178 Nucleostemin_like Nucl 98.4 2.8E-07 6E-12 85.0 5.5 26 104-129 116-141 (172)
360 KOG1954 Endocytosis/signaling 98.4 1.6E-06 3.6E-11 85.9 10.2 81 193-274 147-238 (532)
361 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.6E-06 3.4E-11 77.4 9.3 81 208-296 3-84 (141)
362 KOG2655 Septin family protein 98.3 1.3E-05 2.9E-10 80.9 15.2 138 103-278 19-189 (366)
363 PRK12289 GTPase RsgA; Reviewed 98.3 2.2E-06 4.7E-11 87.8 9.8 86 213-306 86-172 (352)
364 PF14578 GTP_EFTU_D4: Elongati 98.3 9.6E-06 2.1E-10 63.9 10.5 77 317-423 3-79 (81)
365 KOG0448 Mitofusin 1 GTPase, in 98.2 1.1E-05 2.4E-10 86.1 10.8 98 193-293 206-310 (749)
366 COG1161 Predicted GTPases [Gen 98.2 2.1E-06 4.5E-11 87.3 5.3 26 104-129 131-156 (322)
367 cd01849 YlqF_related_GTPase Yl 98.2 3.2E-06 6.9E-11 76.6 5.9 26 104-129 99-124 (155)
368 TIGR00157 ribosome small subun 98.1 9.3E-06 2E-10 79.4 9.4 87 213-306 33-120 (245)
369 KOG3886 GTP-binding protein [S 98.1 1E-05 2.2E-10 75.6 8.7 146 106-293 5-163 (295)
370 cd01855 YqeH YqeH. YqeH is an 98.1 2.6E-06 5.5E-11 80.0 4.6 25 105-129 127-151 (190)
371 cd03690 Tet_II Tet_II: This su 98.1 1.9E-05 4E-10 63.9 8.8 79 317-424 2-84 (85)
372 PRK09563 rbgA GTPase YlqF; Rev 98.1 4.4E-06 9.5E-11 83.8 6.0 26 104-129 120-145 (287)
373 PRK00098 GTPase RsgA; Reviewed 98.1 1.3E-05 2.8E-10 80.8 9.3 86 213-305 77-163 (298)
374 cd01854 YjeQ_engC YjeQ/EngC. 98.1 1.2E-05 2.7E-10 80.5 9.0 84 214-305 76-160 (287)
375 KOG3905 Dynein light intermedi 98.1 5.6E-05 1.2E-09 74.1 12.9 57 249-308 224-289 (473)
376 TIGR03597 GTPase_YqeH ribosome 98.1 2.2E-05 4.8E-10 81.2 10.7 101 203-307 50-151 (360)
377 PRK10416 signal recognition pa 98.1 1.4E-05 3E-10 80.9 9.0 94 193-301 197-302 (318)
378 PRK14974 cell division protein 98.1 1.5E-05 3.2E-10 81.1 8.9 94 193-302 223-323 (336)
379 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 6.5E-06 1.4E-10 73.4 5.5 23 107-129 85-107 (141)
380 cd04092 mtEFG2_II_like mtEFG2_ 98.0 3.7E-05 8.1E-10 61.8 9.4 69 336-424 10-82 (83)
381 TIGR03596 GTPase_YlqF ribosome 98.0 6.6E-06 1.4E-10 82.0 6.1 26 104-129 117-142 (276)
382 KOG0096 GTPase Ran/TC4/GSP1 (n 98.0 8E-06 1.7E-10 74.0 5.8 158 104-308 9-168 (216)
383 PRK12288 GTPase RsgA; Reviewed 98.0 3.2E-05 6.8E-10 79.3 10.8 87 214-306 118-205 (347)
384 PF03193 DUF258: Protein of un 98.0 4.4E-06 9.5E-11 75.5 4.0 24 106-129 36-59 (161)
385 PRK01889 GTPase RsgA; Reviewed 98.0 2.8E-05 6E-10 80.3 10.1 83 214-305 110-193 (356)
386 PF05783 DLIC: Dynein light in 98.0 6.7E-05 1.5E-09 79.5 13.0 57 249-308 198-263 (472)
387 TIGR00064 ftsY signal recognit 98.0 3.1E-05 6.6E-10 76.9 9.7 93 193-301 155-260 (272)
388 cd03691 BipA_TypA_II BipA_TypA 98.0 6.8E-05 1.5E-09 60.7 9.9 81 319-424 1-85 (86)
389 cd04088 EFG_mtEFG_II EFG_mtEFG 98.0 6.7E-05 1.4E-09 60.3 9.5 69 336-424 10-82 (83)
390 TIGR00092 GTP-binding protein 98.0 1.7E-05 3.7E-10 81.1 7.2 36 193-228 67-109 (368)
391 cd03699 lepA_II lepA_II: This 97.9 7.7E-05 1.7E-09 60.4 9.7 75 336-424 10-85 (86)
392 PRK12288 GTPase RsgA; Reviewed 97.9 7.7E-06 1.7E-10 83.8 4.1 23 107-129 207-229 (347)
393 PRK12289 GTPase RsgA; Reviewed 97.9 1E-05 2.3E-10 82.9 4.1 23 107-129 174-196 (352)
394 PRK13796 GTPase YqeH; Provisio 97.9 1.4E-05 3.1E-10 82.8 4.9 25 104-128 159-183 (365)
395 PRK13796 GTPase YqeH; Provisio 97.9 9.3E-05 2E-09 76.7 10.8 98 205-307 58-157 (365)
396 cd01851 GBP Guanylate-binding 97.8 6.9E-05 1.5E-09 72.3 9.0 26 103-128 5-30 (224)
397 cd03689 RF3_II RF3_II: this su 97.8 8.9E-05 1.9E-09 59.9 8.1 68 337-424 12-83 (85)
398 TIGR03597 GTPase_YqeH ribosome 97.8 1.8E-05 3.9E-10 81.8 4.8 24 105-128 154-177 (360)
399 KOG4423 GTP-binding protein-li 97.8 4E-06 8.6E-11 75.6 -0.9 113 193-308 75-193 (229)
400 cd04091 mtEFG1_II_like mtEFG1_ 97.7 0.0003 6.4E-09 56.3 9.8 66 337-424 11-80 (81)
401 cd01856 YlqF YlqF. Proteins o 97.7 4.3E-05 9.4E-10 70.4 5.7 25 104-128 114-138 (171)
402 KOG2423 Nucleolar GTPase [Gene 97.7 2.4E-05 5.2E-10 78.4 4.1 59 102-203 304-362 (572)
403 KOG1424 Predicted GTP-binding 97.7 2.9E-05 6.3E-10 80.6 4.6 58 103-203 312-369 (562)
404 cd03112 CobW_like The function 97.7 7.7E-05 1.7E-09 67.8 6.9 62 193-259 87-158 (158)
405 KOG1491 Predicted GTP-binding 97.7 5.7E-05 1.2E-09 74.7 6.1 99 104-228 19-126 (391)
406 PRK14722 flhF flagellar biosyn 97.7 7E-05 1.5E-09 77.0 6.5 24 105-128 137-160 (374)
407 TIGR00157 ribosome small subun 97.6 4.5E-05 9.8E-10 74.6 4.2 24 106-129 121-144 (245)
408 cd01859 MJ1464 MJ1464. This f 97.6 9.3E-05 2E-09 67.0 5.9 26 104-129 100-125 (156)
409 COG1162 Predicted GTPases [Gen 97.6 0.00042 9.1E-09 68.5 10.0 87 215-307 78-165 (301)
410 TIGR01425 SRP54_euk signal rec 97.5 0.00021 4.5E-09 74.8 7.8 64 193-261 183-253 (429)
411 PRK11889 flhF flagellar biosyn 97.5 0.00025 5.5E-09 72.8 8.0 65 193-261 321-391 (436)
412 PF00448 SRP54: SRP54-type pro 97.5 0.00012 2.5E-09 69.1 5.2 66 193-262 84-155 (196)
413 cd03114 ArgK-like The function 97.5 0.00058 1.3E-08 61.4 9.2 58 192-258 91-148 (148)
414 COG1162 Predicted GTPases [Gen 97.5 8.6E-05 1.9E-09 73.3 4.0 23 106-128 165-187 (301)
415 KOG0447 Dynamin-like GTP bindi 97.5 0.00091 2E-08 69.8 11.4 110 193-305 412-540 (980)
416 cd04178 Nucleostemin_like Nucl 97.5 0.00032 7E-09 64.7 7.2 55 218-274 1-57 (172)
417 COG0523 Putative GTPases (G3E 97.5 0.0016 3.4E-08 66.0 12.6 98 193-301 85-193 (323)
418 cd04090 eEF2_II_snRNP Loc2 eEF 97.4 0.0013 2.9E-08 54.1 9.8 65 337-405 11-80 (94)
419 PRK00098 GTPase RsgA; Reviewed 97.4 0.00013 2.7E-09 73.6 4.3 25 105-129 164-188 (298)
420 PRK14721 flhF flagellar biosyn 97.4 0.00022 4.7E-09 74.6 5.9 65 193-261 270-340 (420)
421 TIGR00487 IF-2 translation ini 97.4 0.0048 1E-07 67.8 16.3 183 197-423 391-574 (587)
422 cd03115 SRP The signal recogni 97.4 0.00063 1.4E-08 62.7 8.1 64 193-261 83-153 (173)
423 COG3640 CooC CO dehydrogenase 97.4 0.00018 3.9E-09 68.0 4.3 64 193-260 134-198 (255)
424 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00019 4.2E-09 71.9 4.7 24 106-129 162-185 (287)
425 PRK05306 infB translation init 97.3 0.0095 2.1E-07 67.3 17.7 182 198-423 594-776 (787)
426 PRK12726 flagellar biosynthesi 97.2 0.00056 1.2E-08 70.0 6.5 65 193-261 286-356 (407)
427 KOG2485 Conserved ATP/GTP bind 97.2 0.00054 1.2E-08 67.3 6.1 24 103-126 141-164 (335)
428 PF02492 cobW: CobW/HypB/UreG, 97.2 0.00086 1.9E-08 62.2 7.2 79 193-274 85-169 (178)
429 KOG2484 GTPase [General functi 97.2 0.0003 6.6E-09 71.1 4.2 26 103-128 250-275 (435)
430 KOG2484 GTPase [General functi 97.2 0.0024 5.3E-08 64.7 10.4 79 196-275 125-205 (435)
431 PRK10867 signal recognition pa 97.2 0.0013 2.8E-08 69.3 8.8 64 193-261 184-254 (433)
432 PRK12727 flagellar biosynthesi 97.1 0.001 2.3E-08 70.9 7.5 24 104-127 349-372 (559)
433 CHL00189 infB translation init 97.1 0.014 3.1E-07 65.3 16.8 184 196-423 547-730 (742)
434 cd02036 MinD Bacterial cell di 97.1 0.005 1.1E-07 56.6 11.4 65 194-261 64-128 (179)
435 cd03702 IF2_mtIF2_II This fami 97.1 0.0026 5.6E-08 52.4 8.2 53 337-404 11-64 (95)
436 cd03700 eEF2_snRNP_like_II EF2 97.1 0.0042 9.1E-08 51.0 9.2 63 339-405 14-80 (93)
437 TIGR02475 CobW cobalamin biosy 97.1 0.01 2.3E-07 60.8 14.1 102 193-301 93-222 (341)
438 COG1419 FlhF Flagellar GTP-bin 97.1 0.00065 1.4E-08 69.7 5.1 66 192-261 281-352 (407)
439 PRK00771 signal recognition pa 97.1 0.001 2.2E-08 70.2 6.6 64 193-261 176-246 (437)
440 PRK14723 flhF flagellar biosyn 97.0 0.0014 3.1E-08 73.0 7.3 25 105-129 185-209 (767)
441 TIGR00959 ffh signal recogniti 97.0 0.0023 5E-08 67.4 8.5 63 193-260 183-252 (428)
442 cd02038 FleN-like FleN is a me 97.0 0.0046 9.9E-08 54.9 9.1 78 193-275 45-123 (139)
443 PF09547 Spore_IV_A: Stage IV 97.0 0.015 3.3E-07 59.9 13.6 66 237-310 171-238 (492)
444 PRK06995 flhF flagellar biosyn 97.0 0.0014 3.1E-08 69.6 6.7 23 106-128 257-279 (484)
445 PRK05703 flhF flagellar biosyn 97.0 0.0019 4E-08 68.3 7.5 65 193-261 300-371 (424)
446 PRK06731 flhF flagellar biosyn 96.9 0.0018 3.9E-08 64.0 6.7 65 193-261 155-225 (270)
447 COG0532 InfB Translation initi 96.9 0.039 8.6E-07 58.4 16.8 104 296-423 392-495 (509)
448 PRK11537 putative GTP-binding 96.8 0.012 2.5E-07 59.8 11.9 88 193-290 91-186 (318)
449 PF06858 NOG1: Nucleolar GTP-b 96.8 0.0035 7.5E-08 45.9 5.6 49 209-258 5-58 (58)
450 PRK12724 flagellar biosynthesi 96.8 0.0012 2.5E-08 68.8 4.2 65 193-261 300-373 (432)
451 KOG3859 Septins (P-loop GTPase 96.8 0.0068 1.5E-07 58.5 8.9 135 103-277 40-206 (406)
452 cd03701 IF2_IF5B_II IF2_IF5B_I 96.7 0.0091 2E-07 49.2 7.9 53 337-404 11-64 (95)
453 PRK12723 flagellar biosynthesi 96.7 0.0048 1E-07 64.2 7.7 66 192-261 254-326 (388)
454 cd03111 CpaE_like This protein 96.6 0.0066 1.4E-07 51.1 7.1 60 194-256 44-106 (106)
455 COG1161 Predicted GTPases [Gen 96.6 0.0091 2E-07 60.8 9.2 98 195-302 12-110 (322)
456 cd03703 aeIF5B_II aeIF5B_II: T 96.6 0.019 4.2E-07 48.2 9.4 58 337-405 11-79 (110)
457 KOG1424 Predicted GTP-binding 96.6 0.0096 2.1E-07 62.4 8.8 81 205-293 163-244 (562)
458 COG0541 Ffh Signal recognition 96.5 0.0083 1.8E-07 61.9 7.8 63 193-261 183-253 (451)
459 cd03110 Fer4_NifH_child This p 96.3 0.013 2.9E-07 54.1 7.8 66 192-261 92-157 (179)
460 COG1618 Predicted nucleotide k 96.3 0.14 3.1E-06 46.0 13.5 23 104-126 4-26 (179)
461 TIGR03348 VI_IcmF type VI secr 96.3 0.009 1.9E-07 71.2 7.9 68 193-261 161-257 (1169)
462 KOG1707 Predicted Ras related/ 96.2 0.023 4.9E-07 60.5 9.4 158 101-307 421-581 (625)
463 PRK13695 putative NTPase; Prov 96.2 0.094 2E-06 48.2 12.5 91 198-307 77-171 (174)
464 PRK01889 GTPase RsgA; Reviewed 96.1 0.0052 1.1E-07 63.5 4.1 26 104-129 194-219 (356)
465 smart00275 G_alpha G protein a 96.1 0.022 4.9E-07 58.5 8.6 69 192-260 183-264 (342)
466 KOG1534 Putative transcription 96.0 0.011 2.4E-07 55.0 5.3 111 193-308 98-250 (273)
467 cd00066 G-alpha G protein alph 96.0 0.015 3.2E-07 59.2 6.8 69 192-260 160-241 (317)
468 cd01983 Fer4_NifH The Fer4_Nif 96.0 0.029 6.3E-07 45.4 7.3 36 194-229 35-71 (99)
469 smart00010 small_GTPase Small 95.9 0.0038 8.2E-08 53.4 1.6 21 107-127 2-22 (124)
470 COG0552 FtsY Signal recognitio 95.8 0.049 1.1E-06 54.6 9.1 24 103-126 137-160 (340)
471 KOG3887 Predicted small GTPase 95.8 0.018 3.9E-07 54.7 5.6 101 193-293 75-187 (347)
472 KOG1533 Predicted GTPase [Gene 95.8 0.031 6.7E-07 53.0 7.2 68 192-261 96-177 (290)
473 KOG4181 Uncharacterized conser 95.6 0.14 3.1E-06 51.2 11.5 27 103-129 186-212 (491)
474 PF13555 AAA_29: P-loop contai 95.6 0.013 2.8E-07 44.0 3.2 20 107-126 25-44 (62)
475 COG1116 TauB ABC-type nitrate/ 95.6 0.0092 2E-07 57.4 3.0 23 107-129 31-53 (248)
476 KOG2743 Cobalamin synthesis pr 95.5 0.1 2.2E-06 51.3 10.0 77 193-274 146-238 (391)
477 cd02042 ParA ParA and ParB of 95.3 0.1 2.2E-06 43.4 8.3 35 193-229 40-74 (104)
478 KOG0780 Signal recognition par 95.2 0.056 1.2E-06 54.9 7.3 67 188-260 179-253 (483)
479 COG3840 ThiQ ABC-type thiamine 95.1 0.017 3.6E-07 52.9 3.0 24 106-129 26-49 (231)
480 COG1136 SalX ABC-type antimicr 95.1 0.017 3.6E-07 55.3 3.0 24 106-129 32-55 (226)
481 PF00005 ABC_tran: ABC transpo 95.1 0.017 3.7E-07 50.7 2.9 24 106-129 12-35 (137)
482 COG4148 ModC ABC-type molybdat 95.0 1.3 2.8E-05 43.6 15.5 23 107-129 26-48 (352)
483 TIGR00235 udk uridine kinase. 94.9 0.022 4.9E-07 54.1 3.5 26 103-128 4-29 (207)
484 TIGR00491 aIF-2 translation in 94.8 0.95 2.1E-05 50.0 16.1 70 340-425 479-549 (590)
485 PF13207 AAA_17: AAA domain; P 94.7 0.028 6.1E-07 48.1 3.1 21 107-127 1-21 (121)
486 COG1134 TagH ABC-type polysacc 94.6 0.029 6.2E-07 53.8 3.2 27 103-129 51-77 (249)
487 COG1129 MglA ABC-type sugar tr 94.6 0.056 1.2E-06 57.5 5.7 26 105-130 34-59 (500)
488 cd02019 NK Nucleoside/nucleoti 94.6 0.031 6.8E-07 43.0 2.9 21 108-128 2-22 (69)
489 COG4559 ABC-type hemin transpo 94.6 0.028 6E-07 52.8 2.9 25 106-130 28-52 (259)
490 COG1126 GlnQ ABC-type polar am 94.5 0.033 7.2E-07 52.4 3.3 24 105-128 28-51 (240)
491 KOG2485 Conserved ATP/GTP bind 94.4 0.15 3.3E-06 50.5 7.9 77 194-274 23-100 (335)
492 PRK13833 conjugal transfer pro 94.4 0.1 2.2E-06 53.0 7.0 24 105-128 144-167 (323)
493 cd03264 ABC_drug_resistance_li 94.4 0.032 6.9E-07 53.1 3.2 23 107-129 27-49 (211)
494 cd03222 ABC_RNaseL_inhibitor T 94.4 0.036 7.8E-07 51.3 3.3 25 105-129 25-49 (177)
495 cd01130 VirB11-like_ATPase Typ 94.4 0.034 7.3E-07 51.9 3.1 25 105-129 25-49 (186)
496 PF00004 AAA: ATPase family as 94.3 0.24 5.2E-06 42.6 8.4 21 108-128 1-21 (132)
497 COG0194 Gmk Guanylate kinase [ 94.3 0.08 1.7E-06 48.8 5.3 24 105-128 4-27 (191)
498 PRK07261 topology modulation p 94.3 0.036 7.9E-07 51.0 3.1 21 107-127 2-22 (171)
499 PF13521 AAA_28: AAA domain; P 94.3 0.029 6.3E-07 51.0 2.4 21 107-127 1-21 (163)
500 COG0563 Adk Adenylate kinase a 94.3 0.037 7.9E-07 51.3 3.1 23 106-128 1-23 (178)
No 1
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=6.7e-71 Score=576.85 Aligned_cols=448 Identities=72% Similarity=1.166 Sum_probs=383.5
Q ss_pred cccccccccccccccCCCChhhhccCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccC
Q 039945 78 GLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED 157 (531)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~ 157 (531)
.+..+++..++.+++..+..+.+.++..++|+++||+|||||||+++|+|..++++++|.+||||++++|+++..|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~- 85 (460)
T PTZ00327 7 GLAKQDLSKLDLDKLTPLTPEVISRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCP- 85 (460)
T ss_pred ccccccccccChhhcccCCHHHccCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCc-
Confidence 3444556666777777777777788999999999999999999999999999999999999999999999999888885
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHH
Q 039945 158 DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSE 237 (531)
Q Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e 237 (531)
.|..|.+|+++.........++.. .......+.++|+|||||++|+++|+.++..+|++++||||.+++..+|+++
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e 161 (460)
T PTZ00327 86 -KCPRPTCYQSYGSSKPDNPPCPGC---GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE 161 (460)
T ss_pred -ccCCcccccccCCCcccccccccc---cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH
Confidence 567777777765432222223222 1122334689999999999999999999999999999999998646899999
Q ss_pred HHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCC
Q 039945 238 HLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFID 317 (531)
Q Consensus 238 ~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~ 317 (531)
|+.++..++++++|+|+||+|+++.++.++.++++.++++++.....++||+||++|+|++.|+++|.+.+|.|.++.+.
T Consensus 162 hl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~~~ 241 (460)
T PTZ00327 162 HLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRDLTS 241 (460)
T ss_pred HHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCCCC
Confidence 99999999999999999999999877788888888888876555678999999999999999999999889988888899
Q ss_pred CCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEe
Q 039945 318 PPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAV 397 (531)
Q Consensus 318 ~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~ 397 (531)
||+|+|+++|+|++++..+++++|+|++|+|.+|+|++||.|.++|++..++.+|+|.+.|..++|++|+.++.++++|.
T Consensus 242 p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~ 321 (460)
T PTZ00327 242 PPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAV 321 (460)
T ss_pred CcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEc
Confidence 99999999999998877778889999999999999999999999998655566788887777899999999999999999
Q ss_pred cCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeecee
Q 039945 398 PGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMS 477 (531)
Q Consensus 398 aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~ 477 (531)
|||+|++++++++++++.++.||+||+.++..|++++.|+|++.||.+..+...++..+..+.++|+.|+++++|+|+++
T Consensus 322 aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~ 401 (460)
T PTZ00327 322 PGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTT 401 (460)
T ss_pred CCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccE
Confidence 99999999988888999999999999999988888889999999998742221111100011378999999999999999
Q ss_pred eeEEEEEecCc-eEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEeeceec
Q 039945 478 TGARVLAVKND-LAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQAGTTL 530 (531)
Q Consensus 478 ~~~~v~~i~~~-~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~~~~~ 530 (531)
+.|+|..+..+ .++|+|++|+|+++|+||+||++....|+|||+|.|.+|...
T Consensus 402 ~~~~i~~i~~~~~~~l~l~~P~~~~~gdr~ilr~~~~~~~~tig~G~i~~~~~~ 455 (460)
T PTZ00327 402 TGGRVVGIKDDGIAKLELTTPVCTSVGEKIALSRRVDKHWRLIGWGTIRKGVPV 455 (460)
T ss_pred EEEEEEEeCCCeEEEEEECccEeccCCCEEEEEeccCCCcEEEEEEEEcCCeEe
Confidence 99999999988 999999999999999999999875556999999999999764
No 2
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-73 Score=538.20 Aligned_cols=455 Identities=82% Similarity=1.287 Sum_probs=438.9
Q ss_pred cccccccccccccccccCCCChhhhccCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecc
Q 039945 76 RKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKC 155 (531)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~ 155 (531)
..++.++++..+|..++.+..++.+.++..+||+.+||+.+||||++.++.|..+.+|+.|.||.||+.++|++.++|.|
T Consensus 9 ~~~l~~qdl~~ldv~~l~pls~evisRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc 88 (466)
T KOG0466|consen 9 NKGLAEQDLTKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKC 88 (466)
T ss_pred ccCcchhhccccChhhcCCCCHHHhhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEec
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch
Q 039945 156 EDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT 235 (531)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt 235 (531)
+++.|++|++||+|.+.+++...|+..|+.+ -+...+++.|+|+|||.-++.+|+.++...|.++|++.+++.+.++||
T Consensus 89 ~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~-~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQT 167 (466)
T KOG0466|consen 89 DDPKCPRPGCYRSFGSSKEDRPPCDRPGCEG-KMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQT 167 (466)
T ss_pred CCCCCCCcchhhccCCCCCCCCCcccCCCCC-ceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCch
Confidence 9999999999999999999999999999855 455668999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCC
Q 039945 236 SEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNF 315 (531)
Q Consensus 236 ~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~ 315 (531)
.||+...+.+..++++++-||+|+..++...+.++++.+|+++....+.|++|+||.-+.||+.+.++|.+.+|.|.++.
T Consensus 168 sEHLaaveiM~LkhiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 168 SEHLAAVEIMKLKHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred hhHHHHHHHhhhceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence 99999999999999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred CCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeE
Q 039945 316 IDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQF 395 (531)
Q Consensus 316 ~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~ 395 (531)
..|++|.|.++|+|++||.++++..|.|+.|.+..|.|++||.+.+.|+....+.+|.+.|.|+..+|.|++..+.++++
T Consensus 248 ~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~ 327 (466)
T KOG0466|consen 248 TSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQF 327 (466)
T ss_pred CCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeec
Q 039945 396 AVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGS 475 (531)
Q Consensus 396 a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~ 475 (531)
|.||..++++.++|+++.+.|-..|+||+..+.+|.++..++..+++|.+..+++.++.+++.+..+|.+|+.+++++|+
T Consensus 328 AvPGGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS 407 (466)
T KOG0466|consen 328 AVPGGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGS 407 (466)
T ss_pred ecCCceeeeccccCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhccccccccccchhhhcccCcEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999888888888788889999999999999999
Q ss_pred eeeeEEEEEecCceEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEeeceecC
Q 039945 476 MSTGARVLAVKNDLAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQAGTTLD 531 (531)
Q Consensus 476 ~~~~~~v~~i~~~~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~~~~~~ 531 (531)
.+..++|..++.+.+.+.|..|+|.+.|+++.|++|.+..||+||||.|.+|++++
T Consensus 408 ~sTG~~v~~vk~d~~k~~Lt~P~CteigEkiAlSRrvekhWRLIGwg~I~~Gtti~ 463 (466)
T KOG0466|consen 408 TSTGGRVSAVKADMAKIQLTSPVCTEIGEKIALSRRVEKHWRLIGWGQIKAGTTIE 463 (466)
T ss_pred cccCceEEEEecceeeeEecCchhcccchhhhhhhhhhhheEEecceeEeCCeeec
Confidence 99999999999999999999999999999999999999999999999999999874
No 3
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-70 Score=522.37 Aligned_cols=408 Identities=54% Similarity=0.923 Sum_probs=378.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
++.+||+++||++||||||..+|+|.++++|.+|.+||||+.++|++.++|.|.+ |..|.+|. ....|+..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~--c~~~~~y~-------~~~~C~~c 78 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPE--CYRPECYT-------TEPKCPNC 78 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCC--CCCCcccc-------cCCCCCCC
Confidence 4569999999999999999999999999999999999999999999999999964 55554443 34567666
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~ 262 (531)
|... ...+++.|+|+|||+-++.+|++++...|.+||||+|++++.++||+||+..++.+|++++|+|-||+|+++.
T Consensus 79 g~~~---~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~ 155 (415)
T COG5257 79 GAET---ELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR 155 (415)
T ss_pred CCCc---cEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH
Confidence 5322 3448999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCce
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGG 342 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~ 342 (531)
++..+.+++|.+|+++....+.|++|+||..+.|||.|+++|.+.+|.|.++.+.+++|+|.++|+||+||..++..+|.
T Consensus 156 E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GG 235 (415)
T COG5257 156 ERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGG 235 (415)
T ss_pred HHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCc
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCcccccccccccee
Q 039945 343 VAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQV 422 (531)
Q Consensus 343 v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~v 422 (531)
|+.|.+.+|.+++||++.+.|+.. ..+.|++.|.|...+|.||+.....+++|.||..+++..++|+.+++.|...|+|
T Consensus 236 ViGGsl~~G~l~vGDEIEIrPGi~-v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V 314 (415)
T COG5257 236 VIGGSLVQGVLRVGDEIEIRPGIV-VEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQV 314 (415)
T ss_pred eecceeeeeeEecCCeEEecCCeE-eecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEecccCcchhhhhhhcccc
Confidence 999999999999999999999744 4566788999999999999999999999999999999999999999999999999
Q ss_pred eccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCceEEEEeCCeeeccc
Q 039945 423 LGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSR 502 (531)
Q Consensus 423 l~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~~v~~~l~~p~~~~~ 502 (531)
++.++.+|+++.+|+.++.+|.+..+.+ +..+.+||+.|+.+++.+|+.+..+.|.+++++.+++.|.+|+|.+.
T Consensus 315 ~G~pG~lPpv~~~~~ie~~LL~RvvG~~-----~e~kvepik~~E~Lml~VGtatT~GvV~~~k~d~~ev~Lk~Pvcae~ 389 (415)
T COG5257 315 VGKPGTLPPVWTSIRIEYHLLERVVGTK-----EELKVEPIKTNEVLMLNVGTATTVGVVTSAKKDEIEVKLKRPVCAEI 389 (415)
T ss_pred ccCCCCCCCceEEEEEEeeehhhhhCcc-----cccccccccCCCeEEEEeecceeEEEEEEecCceEEEEeccceecCC
Confidence 9999999999999999999998654433 23456899999999999999999999999999999999999999999
Q ss_pred CCEEEEEeccCCCceEEEEEEEeece
Q 039945 503 GEKIALSRRVEKHWRLIGWGQIQAGT 528 (531)
Q Consensus 503 g~r~ilr~~~~~~~~tig~G~I~~~~ 528 (531)
|+|++|+||..+.||+||||.|.+|+
T Consensus 390 g~rvaisRri~~rWRLIG~G~ik~g~ 415 (415)
T COG5257 390 GERVAISRRIGNRWRLIGYGTIKEGT 415 (415)
T ss_pred CCEEEEEeeecceEEEEeEEEEecCC
Confidence 99999999999999999999999884
No 4
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=3.9e-61 Score=502.71 Aligned_cols=405 Identities=51% Similarity=0.881 Sum_probs=336.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
++.+||+++||+|||||||+++|++...+++.+|++||+|++++++.+..+.+. .+..+..|... ..+...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~~~ 72 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCP--ECDGPECYTTE-------PVCPNC 72 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEeccccccccccc--ccCcccccccc-------cccccc
Confidence 466899999999999999999999988889999999999999998876554331 11111111110 000000
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~ 262 (531)
+......+.++|||||||++|.+++..++..+|++++|||++++....|+.+|+.++..++++++|+|+||+|+.+.
T Consensus 73 ---~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 73 ---GSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred ---ccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence 00011126899999999999999999999999999999999987228899999999999999889999999999987
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCce
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGG 342 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~ 342 (531)
+...+.++++.++++.......+++++||++|+|+++|+++|...+|.|.++.+.||+|+|+++|+|++++..+++++|+
T Consensus 150 ~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~ 229 (406)
T TIGR03680 150 EKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGG 229 (406)
T ss_pred HHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCcee
Confidence 66655667777776544344678999999999999999999998788888888999999999999999988777888999
Q ss_pred EEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCcccccccccccee
Q 039945 343 VAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQV 422 (531)
Q Consensus 343 v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~v 422 (531)
|++|+|.+|+|++||.|.++|++. ...+|.+.+.|..++|++|++++.++++|.||++|+++++.++++++.++++|+|
T Consensus 230 Vv~G~v~~G~i~~gd~v~i~P~~~-~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~v 308 (406)
T TIGR03680 230 VIGGSLIQGKLKVGDEIEIRPGIK-VEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQV 308 (406)
T ss_pred EEEEEEEeCEEeCCCEEEEccCcc-ccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccE
Confidence 999999999999999999999732 2234544455667899999999999999999999999987666889999999999
Q ss_pred eccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCceEEEEeCCeeeccc
Q 039945 423 LGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSR 502 (531)
Q Consensus 423 l~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~~v~~~l~~p~~~~~ 502 (531)
|+.++..|+++..|+|++.||.+..... +..+.++|..|+++++|+|+.++.|+|..+.++.++++|.+|+|+++
T Consensus 309 l~~~~~~~~~~~~f~a~i~~l~~~~~~~-----~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~~~~~~l~l~~p~~~~~ 383 (406)
T TIGR03680 309 VGKPGTLPPVWESLELEVHLLERVVGTE-----EELKVEPIKTGEVLMLNVGTATTVGVVTSARKDEIEVKLKRPVCAEE 383 (406)
T ss_pred EEcCCCCCCceeEEEEEEEEEecccCcc-----cccccccCCCCCEEEEEEccceEEEEEEEcCCcEEEEEECCcEEcCC
Confidence 9999988888899999999997632110 01124789999999999999999999999999999999999999999
Q ss_pred CCEEEEEeccCCCceEEEEEEEe
Q 039945 503 GEKIALSRRVEKHWRLIGWGQIQ 525 (531)
Q Consensus 503 g~r~ilr~~~~~~~~tig~G~I~ 525 (531)
|+||+|.++.++.||++|+|.|.
T Consensus 384 g~r~~~~~~~~~~~~~~g~g~~~ 406 (406)
T TIGR03680 384 GDRVAISRRVGGRWRLIGYGIIK 406 (406)
T ss_pred CCEEEEEEecCCceEEEEEEEeC
Confidence 99999998889999999999984
No 5
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-60 Score=468.62 Aligned_cols=344 Identities=23% Similarity=0.347 Sum_probs=303.9
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHH---CCC-------------------------cCccccceecceEeeecceeeeee
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAIS---GVQ-------------------------TVRFKNELERNITIKLGYANAKIY 153 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~---g~~-------------------------~~~~~~e~~~git~~~~~~~~~~~ 153 (531)
.++++|++++||+|||||||+++|+ |.- .|+.++|++||+|+++++..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f--- 80 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF--- 80 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe---
Confidence 4788999999999999999999997 221 246689999999999987543
Q ss_pred cccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC---
Q 039945 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC--- 230 (531)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~--- 230 (531)
++..+.++++|||||+||+++|+.++++||++||||||+.+.
T Consensus 81 -----------------------------------et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~ 125 (428)
T COG5256 81 -----------------------------------ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEA 125 (428)
T ss_pred -----------------------------------ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCcccc
Confidence 223368999999999999999999999999999999999862
Q ss_pred ---CCcchHHHHHHHHHcCCceEEEEEeccCCccH--HHHHHHHHHHHHHHhccc--CCCCCEEEecccCccch------
Q 039945 231 ---PQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE--NVAINQHEAIMKFIQGTV--ADGAPVVPISAQLKYNI------ 297 (531)
Q Consensus 231 ---~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~--~~~~~~~~~i~~~l~~~~--~~~~~ii~iSa~~g~gi------ 297 (531)
..+|++||+.+++.+|+.++||++||||++++ +++++...++..+++..+ ..+++|||+||.+|+|+
T Consensus 126 g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~ 205 (428)
T COG5256 126 GFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSEN 205 (428)
T ss_pred ccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcC
Confidence 68999999999999999999999999999864 456677777777665433 34689999999999998
Q ss_pred ------HHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCC
Q 039945 298 ------DVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDES 371 (531)
Q Consensus 298 ------~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~ 371 (531)
+.|+++|. .+..|.+..++||+++|.++|.+.+ .|+|..|+|++|.|++||+|+++|++
T Consensus 206 ~pWY~GpTLleaLd-~~~~p~~~~d~Plr~pI~~v~~i~~--------~gtv~vGrVEsG~i~~g~~v~~~p~~------ 270 (428)
T COG5256 206 MPWYKGPTLLEALD-QLEPPERPLDKPLRLPIQDVYSISG--------IGTVPVGRVESGVIKPGQKVTFMPAG------ 270 (428)
T ss_pred CcCccCChHHHHHh-ccCCCCCCCCCCeEeEeeeEEEecC--------CceEEEEEEeeeeeccCCEEEEecCc------
Confidence 47999999 7888999999999999999998765 89999999999999999999999985
Q ss_pred CceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeeccccc
Q 039945 372 GNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRT 451 (531)
Q Consensus 372 g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~ 451 (531)
...+|+||++++++++.|.|||+|+++++ ++..+|+++|+|+++++.+|.++..|.|++.+|.|+
T Consensus 271 -------~~~evksie~~~~~~~~a~~GD~i~~~vr---gv~~~dI~~Gdv~~~~~n~~t~s~~f~a~i~vl~~p----- 335 (428)
T COG5256 271 -------VVGEVKSIEMHHEEISQAEPGDNVGFNVR---GVEKNDIRRGDVIGHSDNPPTVSPEFTAQIIVLWHP----- 335 (428)
T ss_pred -------ceEEEeeeeecccccccCCCCCeEEEEec---CCchhccCCccEeccCCCCcccccceEEEEEEEecC-----
Confidence 35789999999999999999999999999 889999999999999999999889999999999883
Q ss_pred CCCcccccccccCCCCEEEEEeeceeeeEEEEEecCc----------------------eEEEEeCCeeecccCC-----
Q 039945 452 KGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKND----------------------LAKLQLTSPVCTSRGE----- 504 (531)
Q Consensus 452 ~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~----------------------~v~~~l~~p~~~~~g~----- 504 (531)
..|..|+.+++|+++...+|++..+... .+.++..+|+|++..+
T Consensus 336 ---------~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~~~e~~~~~~~L 406 (428)
T COG5256 336 ---------GIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPLCLEKVSEIPQL 406 (428)
T ss_pred ---------ccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCceEeeecccCCcc
Confidence 6899999999999999999999554220 7889999999999763
Q ss_pred -EEEEEeccCCCceEEEEEEEee
Q 039945 505 -KIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 505 -r~ilr~~~~~~~~tig~G~I~~ 526 (531)
||+||| .|+|||+|+|..
T Consensus 407 grfalrd----~g~tIA~G~v~~ 425 (428)
T COG5256 407 GRFALRD----MGQTIAAGKVLE 425 (428)
T ss_pred ceEEEEe----CCCeEEeEEEEe
Confidence 999997 899999999974
No 6
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=5.4e-59 Score=486.10 Aligned_cols=406 Identities=51% Similarity=0.879 Sum_probs=328.9
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
+++.+||+++||.|||||||+++|++...+++.+|++||+|++++++......+.+ +..+..|.. . ..+..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~--~~~~~~~~~---~----~~~~~ 76 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPD--CEEPEAYTT---E----PKCPN 76 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccc--cCccccccc---c----ccccc
Confidence 36779999999999999999999999888888999999999999886554422110 001111100 0 00000
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
.+ . .....+.++|||||||++|..+++.++..+|++++|+|++.+....++.+++..+..++++++++|+||+|+.+
T Consensus 77 ~~--~-~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 77 CG--S-ETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred cc--c-ccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 00 0 00012689999999999999999999999999999999998722788999999888888888999999999987
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCc
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRG 341 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G 341 (531)
.+......+++.++++.......+++++||++|+|+++|+++|...++.|.++.+.|++|+|+++|+|.+++..+++++|
T Consensus 154 ~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G 233 (411)
T PRK04000 154 KERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKG 233 (411)
T ss_pred chhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcc
Confidence 65555556677777654333467999999999999999999999888888888899999999999999988776788899
Q ss_pred eEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccce
Q 039945 342 GVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQ 421 (531)
Q Consensus 342 ~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~ 421 (531)
+|++|+|.+|.|++||.|.++|++. +..+|.....|..++|++|+.++.++++|.|||+|+++|++++++++.++.+|+
T Consensus 234 ~Vv~G~v~~G~l~~gd~v~i~P~~~-~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~ 312 (411)
T PRK04000 234 GVIGGSLIQGVLKVGDEIEIRPGIK-VEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGS 312 (411)
T ss_pred eEEEEEEEeCEEecCCEEEEcCCcc-eecccccccccceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCcc
Confidence 9999999999999999999999742 111222222345689999999999999999999999999766678889999999
Q ss_pred eeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCceEEEEeCCeeecc
Q 039945 422 VLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTS 501 (531)
Q Consensus 422 vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~~v~~~l~~p~~~~ 501 (531)
||+.++.+|+++.+|+|++.||.+..+.+ +...+++|..|+++++|+|+.++.|+|..++.+.++++|.+|+|++
T Consensus 313 vl~~~~~~~~~~~~f~a~v~~l~~~~~~~-----~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~~~~~~l~~p~~~~ 387 (411)
T PRK04000 313 VAGKPGTLPPVWESLTIEVHLLERVVGTK-----EELKVEPIKTGEPLMLNVGTATTVGVVTSARKDEAEVKLKRPVCAE 387 (411)
T ss_pred EEEcCCCCCCceEEEEEEEEEEEhhcCcc-----ccccCCCCCCCCEEEEEEeccEEEEEEEEcCCcEEEEEECCcEecC
Confidence 99999988888899999999998621111 1112468999999999999999999999999999999999999999
Q ss_pred cCCEEEEEeccCCCceEEEEEEEe
Q 039945 502 RGEKIALSRRVEKHWRLIGWGQIQ 525 (531)
Q Consensus 502 ~g~r~ilr~~~~~~~~tig~G~I~ 525 (531)
+|+||+|.++.+..||++|+|.|.
T Consensus 388 ~g~r~~~~~~~~~~~~~~~~~~~~ 411 (411)
T PRK04000 388 EGDRVAISRRVGGRWRLIGYGIIK 411 (411)
T ss_pred CCCEEEEEEecCCcEEEEEEEEeC
Confidence 999999987788889999999874
No 7
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=6.5e-57 Score=469.13 Aligned_cols=350 Identities=27% Similarity=0.387 Sum_probs=297.9
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCC-------------CcCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
.++++||+++||+|||||||+++|++. ..+++++|++||+|+++....+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~------------------ 70 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEY------------------ 70 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEe------------------
Confidence 477899999999999999999999863 2456789999999998865321
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
+. ..+.++|||||||++|..++++++..+|++++|+|+.++ ..+|+++|+.++..++++
T Consensus 71 -----------~~---------~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g-~~~~t~~~~~~~~~~g~~ 129 (394)
T PRK12736 71 -----------ET---------EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQVGVP 129 (394)
T ss_pred -----------cC---------CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC-CchhHHHHHHHHHHcCCC
Confidence 00 126899999999999999999999999999999999998 799999999999999988
Q ss_pred eEEEEEeccCCccHHHH-HHHHHHHHHHHhcccC--CCCCEEEecccCcc--------chHHHHHHHHccCCCCCCCCCC
Q 039945 249 HIIILQNKVDLIQENVA-INQHEAIMKFIQGTVA--DGAPVVPISAQLKY--------NIDVVCEYIVKKIPIPERNFID 317 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~~-~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~--------gi~~L~~~L~~~l~~~~~~~~~ 317 (531)
++|+++||+|+++.+.. +...+++.++++.... ...|++++||++|. ++++|+++|.+.+|.|.++.++
T Consensus 130 ~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~ 209 (394)
T PRK12736 130 YLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDK 209 (394)
T ss_pred EEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCC
Confidence 78899999999854433 3345577777765432 35799999999983 6899999999889988888899
Q ss_pred CCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEe
Q 039945 318 PPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAV 397 (531)
Q Consensus 318 ~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~ 397 (531)
||+|+|+++|.+++ .|+|++|+|.+|+|++||.|+++|.+. + ..++|++|+.++.++++|.
T Consensus 210 p~r~~I~~~~~~~g--------~G~Vv~G~v~~G~l~~gd~v~i~p~~~-------~----~~~~V~sI~~~~~~~~~a~ 270 (394)
T PRK12736 210 PFLMPVEDVFTITG--------RGTVVTGRVERGTVKVGDEVEIVGIKE-------T----QKTVVTGVEMFRKLLDEGQ 270 (394)
T ss_pred CeEEEEEEEEecCC--------cEEEEEEEEeecEEecCCEEEEecCCC-------C----eEEEEEEEEECCEEccEEC
Confidence 99999999998865 899999999999999999999999621 0 3589999999999999999
Q ss_pred cCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeecee
Q 039945 398 PGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMS 477 (531)
Q Consensus 398 aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~ 477 (531)
|||+|+++|+ +++.+++.+|++||.++.+ ..++.|+|++.+|+++.+. .+++|..|+++++|+|+.+
T Consensus 271 aGd~v~l~l~---~i~~~~i~~G~vl~~~~~~-~~~~~f~a~i~vl~~~~~~---------~~~~i~~g~~~~l~~~t~~ 337 (394)
T PRK12736 271 AGDNVGVLLR---GVDRDEVERGQVLAKPGSI-KPHTKFKAEVYILTKEEGG---------RHTPFFNNYRPQFYFRTTD 337 (394)
T ss_pred CCCEEEEEEC---CCcHHhCCcceEEecCCCC-CcceEEEEEEEEEecccCC---------CCCcccCCceEEEEEccCe
Confidence 9999999998 7888899999999998754 4468999999999863210 1368999999999999999
Q ss_pred eeEEEEEecCc---------eEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEee
Q 039945 478 TGARVLAVKND---------LAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 478 ~~~~v~~i~~~---------~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
+.|++...+.. .|+|++.+|+|+++|+||+||+ .++|+|+|.|++
T Consensus 338 ~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~----~g~tv~~G~V~~ 391 (394)
T PRK12736 338 VTGSIELPEGTEMVMPGDNVTITVELIHPIAMEQGLKFAIRE----GGRTVGAGTVTE 391 (394)
T ss_pred EEEEEEecCCcceeCCCCEEEEEEEECceEEEeeCCEEEEec----CCcEEEEEEEEE
Confidence 99999765421 7899999999999999999995 689999999975
No 8
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=1e-56 Score=471.41 Aligned_cols=353 Identities=27% Similarity=0.399 Sum_probs=297.0
Q ss_pred ccCCeeEEEEEcCCCCcHHHHHHHHHCC-------------CcCccccceecceEeeecceeeeeecccCCCCCCCcccc
Q 039945 101 SRQATINIGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYK 167 (531)
Q Consensus 101 ~~~~~~~V~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r 167 (531)
..++++||+++||+|||||||+++|++. ..++.++|++||+|++..+..+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~----------------- 119 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY----------------- 119 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEE-----------------
Confidence 3478899999999999999999999732 2456679999999999865321
Q ss_pred ccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC
Q 039945 168 AYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL 247 (531)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~ 247 (531)
...+++++|+|||||++|+++++.++..+|+++||||+.++ ..+|+++|+.++..+++
T Consensus 120 ---------------------~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g-~~~qt~e~l~~~~~~gi 177 (447)
T PLN03127 120 ---------------------ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-PMPQTKEHILLARQVGV 177 (447)
T ss_pred ---------------------cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCC-CchhHHHHHHHHHHcCC
Confidence 11126899999999999999999999999999999999998 79999999999999998
Q ss_pred ceEEEEEeccCCccHHHHHH-HHHHHHHHHhccc--CCCCCEEEeccc---Cccc-------hHHHHHHHHccCCCCCCC
Q 039945 248 QHIIILQNKVDLIQENVAIN-QHEAIMKFIQGTV--ADGAPVVPISAQ---LKYN-------IDVVCEYIVKKIPIPERN 314 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~-~~~~i~~~l~~~~--~~~~~ii~iSa~---~g~g-------i~~L~~~L~~~l~~~~~~ 314 (531)
+.+|+++||+|+++.....+ ..+++.++++.+. ...+|++++||. +|.| +.+|+++|.+.+|.|.++
T Consensus 178 p~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~ 257 (447)
T PLN03127 178 PSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRV 257 (447)
T ss_pred CeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcc
Confidence 77789999999986544333 3346666665322 246899999886 4555 789999999888888888
Q ss_pred CCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeeccccee
Q 039945 315 FIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQ 394 (531)
Q Consensus 315 ~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~ 394 (531)
.++||+|+|+++|++.+ +|+|++|+|.+|.|++||.|.++|.. ..|. ..++|++|+.++.+++
T Consensus 258 ~~~pfr~~I~~vf~v~g--------~GtVvtG~v~~G~i~~Gd~v~i~p~~----~~g~-----~~~~VksI~~~~~~v~ 320 (447)
T PLN03127 258 LDKPFLMPIEDVFSIQG--------RGTVATGRVEQGTIKVGEEVEIVGLR----PGGP-----LKTTVTGVEMFKKILD 320 (447)
T ss_pred cccceEeeEEEEEEcCC--------ceEEEEEEEEccEEecCCEEEEcccC----CCCc-----EEEEEEEEEEECcEeC
Confidence 89999999999999876 89999999999999999999999752 1111 3689999999999999
Q ss_pred EEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEee
Q 039945 395 FAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIG 474 (531)
Q Consensus 395 ~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g 474 (531)
+|.|||+|++.|+ +++..++.+|+||++++. +..+++|+|++.+|+++.+.. .++|..|+++++|+|
T Consensus 321 ~a~aGd~v~l~L~---~i~~~~i~rG~Vl~~~~~-~~~~~~F~A~i~vl~~~~gg~---------~~~i~~g~~~~~~~~ 387 (447)
T PLN03127 321 QGQAGDNVGLLLR---GLKREDVQRGQVICKPGS-IKTYKKFEAEIYVLTKDEGGR---------HTPFFSNYRPQFYLR 387 (447)
T ss_pred EEcCCCEEEEEeC---CCCHHHCCCccEEecCCC-CceeEEEEEEEEEEccccccc---------CcccccCceeEEEee
Confidence 9999999999998 888889999999999864 567899999999998742111 268999999999999
Q ss_pred ceeeeEEEEEecCc---------eEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEee
Q 039945 475 SMSTGARVLAVKND---------LAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 475 ~~~~~~~v~~i~~~---------~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
+.++.|++...++. .|+|++.+|+|+++|+||+||+ .|+|+|+|.|++
T Consensus 388 t~~~~~~i~~~~~~~~l~~gd~a~v~l~~~~p~~le~g~RfilR~----~g~Tvg~G~V~~ 444 (447)
T PLN03127 388 TADVTGKVELPEGVKMVMPGDNVTAVFELISPVPLEPGQRFALRE----GGRTVGAGVVSK 444 (447)
T ss_pred ecceeEEEEeccCccccCCCCEEEEEEEECceEEEeeCCEEEEEe----CCcEEEEEEEEE
Confidence 99999999765432 7899999999999999999995 789999999986
No 9
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.6e-56 Score=466.41 Aligned_cols=350 Identities=26% Similarity=0.381 Sum_probs=296.7
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCC-------------CcCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
.++++||+++||+|||||||+++|++. ..++..+|+++|+|+++.+..+
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~------------------ 70 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY------------------ 70 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE------------------
Confidence 377899999999999999999999852 3456689999999998765321
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
++. +..++|+|||||++|.+++.+++..+|++++|+|+..+ ..+|+++|+.++..++++
T Consensus 71 -----------~~~---------~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g-~~~qt~e~l~~~~~~gi~ 129 (396)
T PRK12735 71 -----------ETA---------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTREHILLARQVGVP 129 (396)
T ss_pred -----------cCC---------CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-CchhHHHHHHHHHHcCCC
Confidence 011 26899999999999999999999999999999999998 789999999999999988
Q ss_pred eEEEEEeccCCccHHH-HHHHHHHHHHHHhcccC--CCCCEEEecccCcc----------chHHHHHHHHccCCCCCCCC
Q 039945 249 HIIILQNKVDLIQENV-AINQHEAIMKFIQGTVA--DGAPVVPISAQLKY----------NIDVVCEYIVKKIPIPERNF 315 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~-~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~----------gi~~L~~~L~~~l~~~~~~~ 315 (531)
.+|+++||+|+.+.+. .+...+++.++++.+.. .+.+++++||++|+ ++++|+++|...+|.|.++.
T Consensus 130 ~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~ 209 (396)
T PRK12735 130 YIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAI 209 (396)
T ss_pred eEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccC
Confidence 7777899999985433 33444577777765433 35899999999984 78999999998888888888
Q ss_pred CCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeE
Q 039945 316 IDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQF 395 (531)
Q Consensus 316 ~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~ 395 (531)
++||+|+|+++|.+++ .|+|++|+|.+|+|++||.|.++|... ...++|++|++++.++++
T Consensus 210 ~~p~r~~I~~~f~v~g--------~Gtvv~G~v~~G~i~~gd~v~i~p~~~-----------~~~~~VksI~~~~~~v~~ 270 (396)
T PRK12735 210 DKPFLMPIEDVFSISG--------RGTVVTGRVERGIVKVGDEVEIVGIKE-----------TQKTTVTGVEMFRKLLDE 270 (396)
T ss_pred CCCeEEEEEEEEecCC--------ceEEEEEEEEecEEeCCCEEEEecCCC-----------CeEEEEEEEEECCeEeCE
Confidence 9999999999998865 899999999999999999999999621 035899999999999999
Q ss_pred EecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeec
Q 039945 396 AVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGS 475 (531)
Q Consensus 396 a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~ 475 (531)
|.|||+|+++|+ +++..++.+|+|||+++.+ ..++.|+|++.+|++..+. .+++|..|+++++|+|+
T Consensus 271 a~aGd~v~l~L~---~i~~~~i~rG~vl~~~~~~-~~~~~f~a~i~vl~~~~~~---------~~~~i~~g~~~~l~~~t 337 (396)
T PRK12735 271 GQAGDNVGVLLR---GTKREDVERGQVLAKPGSI-KPHTKFEAEVYVLSKEEGG---------RHTPFFNGYRPQFYFRT 337 (396)
T ss_pred ECCCCEEEEEeC---CCcHHHCCcceEEEcCCCC-CcceEEEEEEEEEecccCC---------CCCcccCCCeeEEEecc
Confidence 999999999998 8888899999999998754 4579999999999863210 02689999999999999
Q ss_pred eeeeEEEEEecCc---------eEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEee
Q 039945 476 MSTGARVLAVKND---------LAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 476 ~~~~~~v~~i~~~---------~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
.++.|++...+.. .|+|++++|+|+++|+||+||+ .|+|+|+|.|++
T Consensus 338 ~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~----~g~tv~~G~V~~ 393 (396)
T PRK12735 338 TDVTGTIELPEGVEMVMPGDNVKMTVELIAPIAMEEGLRFAIRE----GGRTVGAGVVAK 393 (396)
T ss_pred ceEEEEEEccCCCceeCCCCEEEEEEEECceEEEeECCEEEEEc----CCcEEEEEEEEE
Confidence 9999999765321 7999999999999999999995 689999999975
No 10
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1.4e-56 Score=470.97 Aligned_cols=344 Identities=22% Similarity=0.289 Sum_probs=295.4
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHH---CC-------------------------CcCccccceecceEeeecceeeeee
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAIS---GV-------------------------QTVRFKNELERNITIKLGYANAKIY 153 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~---g~-------------------------~~~~~~~e~~~git~~~~~~~~~~~ 153 (531)
.++++||+++||+|+|||||+++|+ |. ..|..++|++||+|+++++..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~--- 80 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF--- 80 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe---
Confidence 3778999999999999999999997 21 1244578999999999876322
Q ss_pred cccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCC--
Q 039945 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCP-- 231 (531)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~-- 231 (531)
++ .++.++|+|||||++|.++|+.++..+|++|+|||++.+..
T Consensus 81 --------------------------~~---------~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~ 125 (447)
T PLN00043 81 --------------------------ET---------TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEA 125 (447)
T ss_pred --------------------------cC---------CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceec
Confidence 11 12789999999999999999999999999999999998632
Q ss_pred ----CcchHHHHHHHHHcCCceEEEEEeccCCcc----HHHHHHHHHHHHHHHhcccC--CCCCEEEecccCccchH---
Q 039945 232 ----QPQTSEHLAAVEIMRLQHIIILQNKVDLIQ----ENVAINQHEAIMKFIQGTVA--DGAPVVPISAQLKYNID--- 298 (531)
Q Consensus 232 ----~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~----~~~~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~gi~--- 298 (531)
.+|+++|+.++..++++++|+++||||+.+ ..++.+..++++.+++..+. ..++++|+||++|+|+.
T Consensus 126 g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~ 205 (447)
T PLN00043 126 GISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERS 205 (447)
T ss_pred ccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccc
Confidence 279999999999999998999999999873 34566777888888875432 35799999999999984
Q ss_pred ---------HHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecC
Q 039945 299 ---------VVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKD 369 (531)
Q Consensus 299 ---------~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~ 369 (531)
.|+++|. .++.|.+..+.||+|+|+++|.+.+ .|+|+.|+|.+|.|++||.|.++|++
T Consensus 206 ~~~~Wy~g~tLl~~l~-~i~~p~~~~~~plr~~I~~v~~~~g--------~G~vv~G~V~~G~l~~Gd~v~~~P~~---- 272 (447)
T PLN00043 206 TNLDWYKGPTLLEALD-QINEPKRPSDKPLRLPLQDVYKIGG--------IGTVPVGRVETGVIKPGMVVTFGPTG---- 272 (447)
T ss_pred cCCcccchHHHHHHHh-hcCCCccccCCCcEEEEEEEEEeCC--------cEEEEEEEEECCEEeeCCEEEEcCCC----
Confidence 5889987 5777888889999999999998865 89999999999999999999999974
Q ss_pred CCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCC-CccceeEEEEEEEEEeeeecc
Q 039945 370 ESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVG-SLPEVFVELEVNFFLLRRLLG 448 (531)
Q Consensus 370 ~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~-~~p~~~~~f~a~v~~l~~~~~ 448 (531)
..++|++|+.++.++++|.|||+|++.|+ +++..++.+|+||+++. .+|..+++|+|+++||++
T Consensus 273 ---------~~~~VksI~~~~~~v~~a~aGd~v~i~l~---~~~~~~i~rG~vl~~~~~~p~~~~~~F~A~i~~l~~--- 337 (447)
T PLN00043 273 ---------LTTEVKSVEMHHESLQEALPGDNVGFNVK---NVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNH--- 337 (447)
T ss_pred ---------CEEEEEEEEECCeEeCEecCCCeEEEEEC---CCCHhhCCCccEEccCCCCCCccccEEEEEEEEECC---
Confidence 35899999999999999999999999998 78888999999999874 566778999999999986
Q ss_pred cccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecC--------------------c--eEEEEeCCeeecccC---
Q 039945 449 VRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKN--------------------D--LAKLQLTSPVCTSRG--- 503 (531)
Q Consensus 449 ~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~--------------------~--~v~~~l~~p~~~~~g--- 503 (531)
+.++..|+++.+|+++.+++|+|..+.. + .|+|++.+|+|++++
T Consensus 338 -----------~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~pi~~e~~~~~ 406 (447)
T PLN00043 338 -----------PGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEY 406 (447)
T ss_pred -----------CCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCcEEEEecccC
Confidence 3689999999999999999999987621 0 788899999999984
Q ss_pred ---CEEEEEeccCCCceEEEEEEEee
Q 039945 504 ---EKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 504 ---~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
.||+||| .+.|||+|.|++
T Consensus 407 ~~lGrf~lrd----~~~Tva~G~v~~ 428 (447)
T PLN00043 407 PPLGRFAVRD----MRQTVAVGVIKS 428 (447)
T ss_pred CCCceEEEEE----CCCeEEEEEEEE
Confidence 5999997 789999999974
No 11
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=2.3e-56 Score=470.68 Aligned_cols=350 Identities=27% Similarity=0.402 Sum_probs=298.3
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCC-------------CcCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
.++++||+++||+|+|||||+++|++. ..|+..+|+++|+|++..+..+.
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~----------------- 140 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE----------------- 140 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-----------------
Confidence 467899999999999999999999841 23456789999999988764321
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
+ .++.++|||||||++|+++++.++..+|++++|||+.++ ..+|+++|+.++..++++
T Consensus 141 ------------~---------~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G-~~~qt~e~~~~~~~~gi~ 198 (478)
T PLN03126 141 ------------T---------ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-PMPQTKEHILLAKQVGVP 198 (478)
T ss_pred ------------c---------CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCC
Confidence 1 126899999999999999999999999999999999998 899999999999999988
Q ss_pred eEEEEEeccCCccHHH-HHHHHHHHHHHHhcccC--CCCCEEEecccCccc------------------hHHHHHHHHcc
Q 039945 249 HIIILQNKVDLIQENV-AINQHEAIMKFIQGTVA--DGAPVVPISAQLKYN------------------IDVVCEYIVKK 307 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~-~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~g------------------i~~L~~~L~~~ 307 (531)
++|+++||+|+++.++ .+...+++.++|+..+. ...|++++||.+|.+ +.+|+++|.+.
T Consensus 199 ~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~ 278 (478)
T PLN03126 199 NMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSY 278 (478)
T ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHh
Confidence 8899999999987544 34445578888876432 478999999998842 56799999877
Q ss_pred CCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEee
Q 039945 308 IPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLF 387 (531)
Q Consensus 308 l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~ 387 (531)
.|.|.++.+.||+|+|+++|++++ +|+|++|+|.+|.|++||.|.++|.+. + ..++|++|+
T Consensus 279 ~~~p~r~~~~p~r~~I~~vf~v~g--------~GtVv~G~V~sG~i~~Gd~v~i~p~~~-------~----~~~~VksI~ 339 (478)
T PLN03126 279 IPIPQRQTDLPFLLAVEDVFSITG--------RGTVATGRVERGTVKVGETVDIVGLRE-------T----RSTTVTGVE 339 (478)
T ss_pred CCCCCCccccceeeEEEEEEEeCC--------ceEEEEEEEEcCeEecCCEEEEecCCC-------c----eEEEEEEEE
Confidence 777888888999999999999875 899999999999999999999999631 1 358999999
Q ss_pred ecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCC
Q 039945 388 AEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQE 467 (531)
Q Consensus 388 ~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~ 467 (531)
.++.++++|.|||+|+++|+ +++..++.+|+||++++.+ ...+.|+|++.||+++.+.. ..+|..|+
T Consensus 340 ~~~~~v~~A~aG~~v~l~L~---~i~~~di~rG~VL~~~~~~-~~~~~F~A~i~vL~~~~gg~---------~~~I~~G~ 406 (478)
T PLN03126 340 MFQKILDEALAGDNVGLLLR---GIQKADIQRGMVLAKPGSI-TPHTKFEAIVYVLKKEEGGR---------HSPFFAGY 406 (478)
T ss_pred ECCeECCEEeCCceeeeecc---CCcHHHcCCccEEecCCCC-CceEEEEEEEEEecccccCC---------cccccCCc
Confidence 99999999999999999998 8888899999999998754 45799999999998632111 25899999
Q ss_pred EEEEEeeceeeeEEEEEecCc--------------eEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEee
Q 039945 468 ILMLNIGSMSTGARVLAVKND--------------LAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 468 ~~~l~~g~~~~~~~v~~i~~~--------------~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
++++|+|+.++.|+|..+... .|+|++.+|+|+++++||+||+ .++|+|+|.|++
T Consensus 407 ~~~lhigt~~~~~~I~~i~~~~~~~~~~l~~gd~a~v~l~~~~Pi~~~~~~RfilR~----~~~Tva~G~V~~ 475 (478)
T PLN03126 407 RPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIRE----GGKTVGAGVIQS 475 (478)
T ss_pred EEEEEEEecEEEEEEEEEecccCCCccEeCCCCEEEEEEEECCeEEEccCCEEEEec----CCceEEEEEEEE
Confidence 999999999999999998631 6889999999999999999995 689999999976
No 12
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=3.6e-56 Score=464.23 Aligned_cols=350 Identities=26% Similarity=0.387 Sum_probs=296.1
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCC-------------CcCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
.++++||+++||+|||||||+++|++. ..+++++|++||+|+++.+..+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~------------------ 70 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEY------------------ 70 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEE------------------
Confidence 467899999999999999999999843 3567789999999998755321
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
+ ..++.++|||||||++|..++++++..+|++++|+|+.++ ..+|+++|+.++..++++
T Consensus 71 -----------~---------~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g-~~~qt~e~l~~~~~~gi~ 129 (394)
T TIGR00485 71 -----------E---------TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDG-PMPQTREHILLARQVGVP 129 (394)
T ss_pred -----------c---------CCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCC
Confidence 0 0126899999999999999999999999999999999998 799999999999999998
Q ss_pred eEEEEEeccCCccHHH-HHHHHHHHHHHHhcccC--CCCCEEEecccCcc--------chHHHHHHHHccCCCCCCCCCC
Q 039945 249 HIIILQNKVDLIQENV-AINQHEAIMKFIQGTVA--DGAPVVPISAQLKY--------NIDVVCEYIVKKIPIPERNFID 317 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~-~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~--------gi~~L~~~L~~~l~~~~~~~~~ 317 (531)
++|+++||+|+.+++. .+...+++.++++.+.. .+++++++||++|. ++.+|+++|.+.+|.|.++.++
T Consensus 130 ~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~ 209 (394)
T TIGR00485 130 YIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDK 209 (394)
T ss_pred EEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCC
Confidence 7778999999987543 33344577777775443 34899999999875 4678999998778888888899
Q ss_pred CCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEe
Q 039945 318 PPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAV 397 (531)
Q Consensus 318 ~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~ 397 (531)
||+|+|+++|++++ .|+|++|+|.+|+|++||.|.++|... + ..++|++|+.++.++++|.
T Consensus 210 p~r~~V~~vf~~~g--------~G~Vv~G~v~~G~l~~gd~v~i~p~~~-----~------~~~~VksI~~~~~~~~~a~ 270 (394)
T TIGR00485 210 PFLMPIEDVFSITG--------RGTVVTGRVERGIVKVGEEVEIVGLKD-----T------RKTTVTGVEMFRKELDEGR 270 (394)
T ss_pred CeEEEEEEEEeeCC--------ceEEEEEEEEeeEEeCCCEEEEecCCC-----C------cEEEEEEEEECCeEEEEEC
Confidence 99999999998865 899999999999999999999998520 0 3578999999999999999
Q ss_pred cCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeecee
Q 039945 398 PGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMS 477 (531)
Q Consensus 398 aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~ 477 (531)
|||+|++.|+ +++..++.+|++|++++.+ ..++.|+|++.||++..+. ..++|..|+++++|+|+.+
T Consensus 271 aGd~v~l~l~---~i~~~~i~rG~vl~~~~~~-~~~~~f~a~i~vl~~~~g~---------~~~~i~~g~~~~l~~~t~~ 337 (394)
T TIGR00485 271 AGDNVGLLLR---GIKREEIERGMVLAKPGSI-KPHTKFEAEVYVLKKEEGG---------RHTPFFSGYRPQFYFRTTD 337 (394)
T ss_pred CCCEEEEEeC---CccHHHCCccEEEecCCCC-CcceEEEEEEEEEecCCCC---------CCCccccCceEEEEEecce
Confidence 9999999997 7777899999999998654 4469999999999863211 1268999999999999999
Q ss_pred eeEEEEEecCc---------eEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEee
Q 039945 478 TGARVLAVKND---------LAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 478 ~~~~v~~i~~~---------~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
+.|++..+++. .|+|++.+|+|+++++||+||+ .++|+|+|.|++
T Consensus 338 ~~~~i~~~~~~~~l~~g~~a~v~~~~~~p~~~~~~~rfilR~----~g~tv~~G~V~~ 391 (394)
T TIGR00485 338 VTGSITLPEGVEMVMPGDNVKMTVELISPIALEQGMRFAIRE----GGRTVGAGVVSK 391 (394)
T ss_pred EEEEEEecCCcceeCCCCEEEEEEEECceEEEeECCEEEEec----CCcEEEEEEEEE
Confidence 99999876432 7899999999999999999995 689999999976
No 13
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-58 Score=440.02 Aligned_cols=352 Identities=28% Similarity=0.406 Sum_probs=308.7
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCC-------------CcCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
.++++||+.|||+|||||||..+++.. ..|+-++|+.|||||+....
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHv-------------------- 110 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHV-------------------- 110 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeee--------------------
Confidence 378899999999999999999999732 12455799999999987542
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
.+++..+++..+|||||.||+++|+.++.+.|++||||.|++| .++||+||+.+++..|++
T Consensus 111 ------------------eYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQVGV~ 171 (449)
T KOG0460|consen 111 ------------------EYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQVGVK 171 (449)
T ss_pred ------------------eeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHcCCc
Confidence 2333458899999999999999999999999999999999999 899999999999999999
Q ss_pred eEEEEEeccCCc-cHHHHHHHHHHHHHHHhcc--cCCCCCEEEecccC---cc-------chHHHHHHHHccCCCCCCCC
Q 039945 249 HIIILQNKVDLI-QENVAINQHEAIMKFIQGT--VADGAPVVPISAQL---KY-------NIDVVCEYIVKKIPIPERNF 315 (531)
Q Consensus 249 ~iIvviNK~Dl~-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~iSa~~---g~-------gi~~L~~~L~~~l~~~~~~~ 315 (531)
+++|++||.|++ +++.++-...+++++|..+ ...+.|+|.-||+. |. .|..|++++..++|.|.++.
T Consensus 172 ~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~ 251 (449)
T KOG0460|consen 172 HIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDL 251 (449)
T ss_pred eEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccccc
Confidence 999999999999 5555666666899999854 45678999998775 32 37899999999999999999
Q ss_pred CCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeE
Q 039945 316 IDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQF 395 (531)
Q Consensus 316 ~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~ 395 (531)
+.||.|+|.++|+|.| +|+|++|++++|+|++||++.+...+.. .+..|..|++++..+++
T Consensus 252 ~~pFl~pie~vfsI~G--------RGTVvtGrlERG~lKkG~e~eivG~~~~-----------lkttvtgiemF~K~ld~ 312 (449)
T KOG0460|consen 252 DKPFLLPIEDVFSIPG--------RGTVVTGRLERGVLKKGDEVEIVGHNKT-----------LKTTVTGIEMFRKSLDE 312 (449)
T ss_pred CCCceeehhheeeecC--------CceEEEEEEeecccccCCEEEEeccCcc-----------eeeEeehHHHHHHHHHh
Confidence 9999999999999987 9999999999999999999998765321 46889999999999999
Q ss_pred EecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeec
Q 039945 396 AVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGS 475 (531)
Q Consensus 396 a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~ 475 (531)
|.|||.+++-|+ ++.+++++||||++.|++. ....+|+|++++|....+.+. +|+..+++..+|+.+
T Consensus 313 a~AGDn~G~LlR---Gik~~dvkRGmvl~~pGsv-k~~~k~ea~~YiLsk~EGGR~---------~pf~s~y~~q~fs~T 379 (449)
T KOG0460|consen 313 AQAGDNLGALLR---GIKREDVKRGMVLAKPGSV-KPHNKFEAQLYILSKEEGGRH---------KPFVSGYRPQMFSRT 379 (449)
T ss_pred cccccceehhhh---cCCHHHHhcccEEecCCcc-cccceeeEEEEEEEhhhCCCc---------cchhhccchhheeee
Confidence 999999999999 9999999999999999984 568999999999997665554 788999999999999
Q ss_pred eeeeEEEEEecCc---------eEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEeece
Q 039945 476 MSTGARVLAVKND---------LAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQAGT 528 (531)
Q Consensus 476 ~~~~~~v~~i~~~---------~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~~~ 528 (531)
+.+.++|....+. .+.+.|.+|+++++|+||.||+ .++|||.|.|+.=+
T Consensus 380 wD~~~~v~~~~~~~mvMPGe~~~~~~~Li~pm~le~GqrFtiRe----Gg~TvgtGvvt~~l 437 (449)
T KOG0460|consen 380 WDVTGRVDIPPEKEMVMPGENVKVEVTLIRPMPLEKGQRFTLRE----GGRTVGTGVVTDTL 437 (449)
T ss_pred cccceEEEccChHhcccCCCCeEEEEEEecccccCCCceeeEcc----CCeeeeeeeEeeee
Confidence 9999999888532 7788899999999999999995 89999999998643
No 14
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=2.2e-56 Score=471.19 Aligned_cols=343 Identities=25% Similarity=0.373 Sum_probs=296.0
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCCC----------------------------cCccccceecceEeeecceeeeee
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGVQ----------------------------TVRFKNELERNITIKLGYANAKIY 153 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~~----------------------------~~~~~~e~~~git~~~~~~~~~~~ 153 (531)
.++++||+++||+|+|||||+++|+... .++.++|+++|+|+++.+..+.
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~-- 80 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE-- 80 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe--
Confidence 4778999999999999999999998211 2455789999999988764321
Q ss_pred cccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCC--CCC
Q 039945 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE--SCP 231 (531)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~--~~~ 231 (531)
+. +..++|||||||++|.+++..++..+|++|+|+|+++ + .
T Consensus 81 ---------------------------~~---------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~-~ 123 (425)
T PRK12317 81 ---------------------------TD---------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGG-V 123 (425)
T ss_pred ---------------------------cC---------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCC-C
Confidence 11 2689999999999999999999999999999999998 6 7
Q ss_pred CcchHHHHHHHHHcCCceEEEEEeccCCccH--HHHHHHHHHHHHHHhcccC--CCCCEEEecccCccchHH--------
Q 039945 232 QPQTSEHLAAVEIMRLQHIIILQNKVDLIQE--NVAINQHEAIMKFIQGTVA--DGAPVVPISAQLKYNIDV-------- 299 (531)
Q Consensus 232 ~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~--~~~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~gi~~-------- 299 (531)
..++.+++.++..++.+++++++||+|+.++ ..+....+++.++++..+. ...+++++||++|+|+++
T Consensus 124 ~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy 203 (425)
T PRK12317 124 MPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWY 203 (425)
T ss_pred CcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcc
Confidence 8899999999998998889999999999752 3345566777777764332 247899999999999975
Q ss_pred ----HHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCcee
Q 039945 300 ----VCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIK 375 (531)
Q Consensus 300 ----L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~ 375 (531)
|+++|. .++.|.++.+.||+|+|+++|.+++ .|+|++|+|.+|+|++||.|.++|++
T Consensus 204 ~g~~L~~~l~-~~~~~~~~~~~p~r~~i~~~~~~~g--------~G~vv~G~v~~G~v~~Gd~v~i~P~~---------- 264 (425)
T PRK12317 204 NGPTLLEALD-NLKPPEKPTDKPLRIPIQDVYSISG--------VGTVPVGRVETGVLKVGDKVVFMPAG---------- 264 (425)
T ss_pred cHHHHHHHHh-cCCCCccccCCCcEEEEEEEEeeCC--------CeEEEEEEEeeccEecCCEEEECCCC----------
Confidence 888987 5787877889999999999998876 89999999999999999999999974
Q ss_pred eccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCc
Q 039945 376 CTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSE 455 (531)
Q Consensus 376 ~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~ 455 (531)
..++|++|+.++.++++|.|||+|++.|+ +++..++.+|++|++++.+|.++++|+|++.||++
T Consensus 265 ---~~~~VksI~~~~~~~~~a~aG~~v~i~l~---~~~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~---------- 328 (425)
T PRK12317 265 ---VVGEVKSIEMHHEELPQAEPGDNIGFNVR---GVGKKDIKRGDVCGHPDNPPTVAEEFTAQIVVLQH---------- 328 (425)
T ss_pred ---CeEEEEEEEECCcccCEECCCCeEEEEEC---CCCHHHccCccEecCCCCCCCcccEEEEEEEEECC----------
Confidence 35899999999999999999999999998 78888999999999998888889999999999976
Q ss_pred ccccccccCCCCEEEEEeeceeeeEEEEEecC--------------------c--eEEEEeCCeeecccC------CEEE
Q 039945 456 RQGKVSKLAKQEILMLNIGSMSTGARVLAVKN--------------------D--LAKLQLTSPVCTSRG------EKIA 507 (531)
Q Consensus 456 ~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~--------------------~--~v~~~l~~p~~~~~g------~r~i 507 (531)
++++.+|+++++|+|+++++|+|..|.. + .|+|++.+|+|++++ +||+
T Consensus 329 ----~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~~~~~~~~~~lgrfi 404 (425)
T PRK12317 329 ----PSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVIEKVKEIPQLGRFA 404 (425)
T ss_pred ----CCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeEEEeCCcCCCCccEE
Confidence 3689999999999999999999998742 1 789999999999998 6999
Q ss_pred EEeccCCCceEEEEEEEee
Q 039945 508 LSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 508 lr~~~~~~~~tig~G~I~~ 526 (531)
||+ .|+|+|+|.|++
T Consensus 405 lr~----~g~tv~~G~i~~ 419 (425)
T PRK12317 405 IRD----MGQTIAAGMVID 419 (425)
T ss_pred EEE----CCCeEEEEEEEE
Confidence 997 789999999974
No 15
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=2.9e-56 Score=468.83 Aligned_cols=344 Identities=21% Similarity=0.319 Sum_probs=295.7
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHC---C-------------------------CcCccccceecceEeeecceeeeee
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISG---V-------------------------QTVRFKNELERNITIKLGYANAKIY 153 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g---~-------------------------~~~~~~~e~~~git~~~~~~~~~~~ 153 (531)
.++.+||+++||+|+|||||+++|+. . ..+...+|++||+|+++++..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~--- 80 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF--- 80 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE---
Confidence 36779999999999999999999972 1 1345679999999999876322
Q ss_pred cccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCC--
Q 039945 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCP-- 231 (531)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~-- 231 (531)
++. ++.++|||||||++|+++++.++..+|++++|||+..|..
T Consensus 81 --------------------------~~~---------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~ 125 (446)
T PTZ00141 81 --------------------------ETP---------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEA 125 (446)
T ss_pred --------------------------ccC---------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceec
Confidence 112 2789999999999999999999999999999999998721
Q ss_pred ----CcchHHHHHHHHHcCCceEEEEEeccCC--c--cHHHHHHHHHHHHHHHhcccC--CCCCEEEecccCccchH---
Q 039945 232 ----QPQTSEHLAAVEIMRLQHIIILQNKVDL--I--QENVAINQHEAIMKFIQGTVA--DGAPVVPISAQLKYNID--- 298 (531)
Q Consensus 232 ----~~qt~e~l~~~~~~~~~~iIvviNK~Dl--~--~~~~~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~gi~--- 298 (531)
.+||++|+.++..+|++++|+++||||. + +..++++..+++.++++..+. ..+++||+||++|+|+.
T Consensus 126 ~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~ 205 (446)
T PTZ00141 126 GISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKS 205 (446)
T ss_pred ccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCC
Confidence 4899999999999999999999999994 3 235677778888888875433 46899999999999995
Q ss_pred ---------HHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecC
Q 039945 299 ---------VVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKD 369 (531)
Q Consensus 299 ---------~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~ 369 (531)
.|+++|. .++.|.+..+.|++|+|+++|.+++ .|+|++|+|.+|.|++||.|.++|++
T Consensus 206 ~~~~Wy~G~tL~~~l~-~~~~~~~~~~~p~r~~I~~v~~v~g--------~Gtvv~G~V~~G~l~~Gd~v~i~P~~---- 272 (446)
T PTZ00141 206 DNMPWYKGPTLLEALD-TLEPPKRPVDKPLRLPLQDVYKIGG--------IGTVPVGRVETGILKPGMVVTFAPSG---- 272 (446)
T ss_pred CCCcccchHHHHHHHh-CCCCCCcCCCCCeEEEEEEEEecCC--------ceEEEEEEEEcceEecCCEEEEccCC----
Confidence 4999987 4666777888999999999998875 79999999999999999999999974
Q ss_pred CCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCC-CccceeEEEEEEEEEeeeecc
Q 039945 370 ESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVG-SLPEVFVELEVNFFLLRRLLG 448 (531)
Q Consensus 370 ~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~-~~p~~~~~f~a~v~~l~~~~~ 448 (531)
..++|++|+.++.++++|.|||+|++.|+ +++..++.+|+||+.++ .++..+++|+|++.||++
T Consensus 273 ---------~~~~VksI~~~~~~~~~a~aG~~v~i~L~---~i~~~~v~rG~vl~~~~~~p~~~~~~f~a~i~~l~~--- 337 (446)
T PTZ00141 273 ---------VTTEVKSVEMHHEQLAEAVPGDNVGFNVK---NVSVKDIKRGYVASDSKNDPAKECADFTAQVIVLNH--- 337 (446)
T ss_pred ---------cEEEEEEEEecCcccCEECCCCEEEEEEC---CCCHHHcCCceEEecCCCCCCccceEEEEEEEEECC---
Confidence 35899999999999999999999999998 88888999999999875 455678999999999986
Q ss_pred cccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecC--------------------c--eEEEEeCCeeecccC---
Q 039945 449 VRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKN--------------------D--LAKLQLTSPVCTSRG--- 503 (531)
Q Consensus 449 ~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~--------------------~--~v~~~l~~p~~~~~g--- 503 (531)
+.+|..|+++++|+|+.++.|+|..+.. + .|+|++.+|+|++++
T Consensus 338 -----------~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~ 406 (446)
T PTZ00141 338 -----------PGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKPMCVEVFNEY 406 (446)
T ss_pred -----------CCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCceEEeecccC
Confidence 3689999999999999999999998821 1 789999999999964
Q ss_pred ---CEEEEEeccCCCceEEEEEEEee
Q 039945 504 ---EKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 504 ---~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
+||+||| .++|+|+|.|.+
T Consensus 407 ~~lgrfilrd----~g~tva~G~I~~ 428 (446)
T PTZ00141 407 PPLGRFAVRD----MKQTVAVGVIKS 428 (446)
T ss_pred CCCccEEEEE----CCCEEEEEEEEE
Confidence 6999997 679999999964
No 16
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1e-55 Score=460.00 Aligned_cols=350 Identities=26% Similarity=0.389 Sum_probs=295.5
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCC-------------CcCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
.++.+||+++||+|||||||+++|++. ..++.++|++||+|+++.+..+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~------------------ 70 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEY------------------ 70 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEE------------------
Confidence 367899999999999999999999862 2356689999999998865321
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
++. +..++|+|||||.+|..++..++..+|++++|+|+..+ ..+|+++++.++..++++
T Consensus 71 -----------~~~---------~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g-~~~qt~~~~~~~~~~g~p 129 (396)
T PRK00049 71 -----------ETE---------KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTREHILLARQVGVP 129 (396)
T ss_pred -----------cCC---------CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-CchHHHHHHHHHHHcCCC
Confidence 011 26899999999999999999999999999999999998 799999999999999977
Q ss_pred eEEEEEeccCCccHHH-HHHHHHHHHHHHhcccC--CCCCEEEecccCcc----------chHHHHHHHHccCCCCCCCC
Q 039945 249 HIIILQNKVDLIQENV-AINQHEAIMKFIQGTVA--DGAPVVPISAQLKY----------NIDVVCEYIVKKIPIPERNF 315 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~-~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~----------gi~~L~~~L~~~l~~~~~~~ 315 (531)
.+|+++||+|+.+.+. .+...+++.++++.... ...|++++||++|. |++.|+++|...+|.|.+..
T Consensus 130 ~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~ 209 (396)
T PRK00049 130 YIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAI 209 (396)
T ss_pred EEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCC
Confidence 5567899999985433 33445577777765432 46899999999975 67899999998888888888
Q ss_pred CCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeE
Q 039945 316 IDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQF 395 (531)
Q Consensus 316 ~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~ 395 (531)
++||+|+|+++|++++ .|+|++|+|.+|+|++||.|.++|... + ..++|++|+.++.++++
T Consensus 210 ~~p~r~~I~~~f~v~g--------~G~Vv~G~v~~G~i~~gd~v~i~p~~~-----~------~~~~VksI~~~~~~~~~ 270 (396)
T PRK00049 210 DKPFLMPIEDVFSISG--------RGTVVTGRVERGIIKVGEEVEIVGIRD-----T------QKTTVTGVEMFRKLLDE 270 (396)
T ss_pred CCCeEEEEEEEEeeCC--------ceEEEEEEEeeeEEecCCEEEEeecCC-----C------ceEEEEEEEECCcEeCE
Confidence 9999999999998865 899999999999999999999998621 0 35899999999999999
Q ss_pred EecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeec
Q 039945 396 AVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGS 475 (531)
Q Consensus 396 a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~ 475 (531)
|.|||+|++.|+ +++.+++.+|++||+++.+ ..++.|+|++.+|++..+. ..++|..|+++++|+|+
T Consensus 271 a~~Gd~v~l~l~---~i~~~~i~~G~vl~~~~~~-~~~~~f~a~i~vl~~~~~g---------~~~~i~~g~~~~~~~~t 337 (396)
T PRK00049 271 GQAGDNVGALLR---GIKREDVERGQVLAKPGSI-TPHTKFEAEVYVLSKEEGG---------RHTPFFNGYRPQFYFRT 337 (396)
T ss_pred EcCCCEEEEEeC---CCCHHHCCcceEEecCCCC-CcceEEEEEEEEEecCcCC---------CCCcccCCCEEEEEEec
Confidence 999999999998 7888899999999998754 4579999999999863210 13689999999999999
Q ss_pred eeeeEEEEEecC-------c--eEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEee
Q 039945 476 MSTGARVLAVKN-------D--LAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 476 ~~~~~~v~~i~~-------~--~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
.++.|++...++ + .|+|++.+|+|+++|+||+||+ .|+|+|+|.|++
T Consensus 338 ~~~~~~i~l~~~~~~l~~g~~a~v~i~~~~p~~~e~~~RfilR~----~g~t~~~G~V~~ 393 (396)
T PRK00049 338 TDVTGVIELPEGVEMVMPGDNVEMTVELIAPIAMEEGLRFAIRE----GGRTVGAGVVTK 393 (396)
T ss_pred CcEEEEEEecCCCcccCCCCEEEEEEEECceEEEeeCCEEEEec----CCcEEEEEEEEE
Confidence 999999954322 1 7899999999999999999995 689999999986
No 17
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=9.4e-56 Score=462.61 Aligned_cols=351 Identities=27% Similarity=0.402 Sum_probs=299.0
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCC-------------CcCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
.++++||+++||+|||||||+|+|++. ..++.++|+++|+|+++....+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~------------------ 70 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY------------------ 70 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE------------------
Confidence 467899999999999999999999853 2356789999999998865321
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
++. +..+.|+|||||.+|.+++.+++..+|++++|+|+..+ ..+|+++|+.++..++++
T Consensus 71 -----------~~~---------~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g-~~~qt~~~~~~~~~~g~~ 129 (409)
T CHL00071 71 -----------ETE---------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTKEHILLAKQVGVP 129 (409)
T ss_pred -----------ccC---------CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCC
Confidence 011 26899999999999999999999999999999999998 899999999999999987
Q ss_pred eEEEEEeccCCccHHH-HHHHHHHHHHHHhcccC--CCCCEEEecccCcc------------------chHHHHHHHHcc
Q 039945 249 HIIILQNKVDLIQENV-AINQHEAIMKFIQGTVA--DGAPVVPISAQLKY------------------NIDVVCEYIVKK 307 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~-~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~------------------gi~~L~~~L~~~ 307 (531)
++|+++||+|+++... .+...+++.++|+.... ...|++++||++|+ ++..|+++|...
T Consensus 130 ~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~ 209 (409)
T CHL00071 130 NIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSY 209 (409)
T ss_pred EEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhh
Confidence 7889999999987544 33445678888775432 24899999999986 357899999988
Q ss_pred CCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEee
Q 039945 308 IPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLF 387 (531)
Q Consensus 308 l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~ 387 (531)
+|.|.++.+.||+|+|+++|.+++ .|+|++|+|.+|+|++||.|.+.|... + ..++|++|+
T Consensus 210 ~~~p~~~~~~p~r~~I~~v~~~~g--------~G~Vv~G~V~sG~l~~Gd~v~i~p~~~-----~------~~~~VksI~ 270 (409)
T CHL00071 210 IPTPERDTDKPFLMAIEDVFSITG--------RGTVATGRIERGTVKVGDTVEIVGLRE-----T------KTTTVTGLE 270 (409)
T ss_pred CCCCCCCCCCCEEEEEEEEEEeCC--------CeEEEEEEEecCEEeeCCEEEEeeCCC-----C------cEEEEEEEE
Confidence 888888889999999999998865 899999999999999999999987421 0 257999999
Q ss_pred ecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCC
Q 039945 388 AEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQE 467 (531)
Q Consensus 388 ~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~ 467 (531)
.+++++++|.|||+|+++|+ +++..++.+|++|++++. +..+++|+|++.+|+++.+ ...++|..|+
T Consensus 271 ~~~~~v~~a~aGd~v~i~l~---~i~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~l~~~~~---------~~~~~i~~g~ 337 (409)
T CHL00071 271 MFQKTLDEGLAGDNVGILLR---GIQKEDIERGMVLAKPGT-ITPHTKFEAQVYILTKEEG---------GRHTPFFPGY 337 (409)
T ss_pred EcCcCCCEECCCceeEEEEc---CCCHHHcCCeEEEecCCC-CCcceEEEEEEEEEecccC---------CccccccCCc
Confidence 99999999999999999998 787889999999999875 4558999999999986311 0136899999
Q ss_pred EEEEEeeceeeeEEEEEecCc--------------eEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEeec
Q 039945 468 ILMLNIGSMSTGARVLAVKND--------------LAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQAG 527 (531)
Q Consensus 468 ~~~l~~g~~~~~~~v~~i~~~--------------~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~~ 527 (531)
++++|+|+.+++|+|..+... .|+|++.+|+|+++|+||+||+ .|+|+|+|.|++-
T Consensus 338 ~~~~~~gt~~~~~~i~~i~~~~~~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfilR~----~~~tig~G~V~~~ 407 (409)
T CHL00071 338 RPQFYVRTTDVTGKIESFTADDGSKTEMVMPGDRIKMTVELIYPIAIEKGMRFAIRE----GGRTVGAGVVSKI 407 (409)
T ss_pred eEEEEEcccEEEEEEEEEcccCCCCCcEecCCCEEEEEEEECCeEEEeeCCEEEEec----CCeEEEEEEEEEe
Confidence 999999999999999999631 7899999999999999999995 7999999999864
No 18
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-56 Score=421.01 Aligned_cols=350 Identities=28% Similarity=0.404 Sum_probs=304.1
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCCC-------------cCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGVQ-------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~~-------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
.++++||+.+||+|+|||||..+|++.. .+.-++|++|||||+.+..
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahv-------------------- 68 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHV-------------------- 68 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceecccee--------------------
Confidence 4788999999999999999999997432 2345799999999987652
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
.+++.++.+.++|||||.||+++|+.++.++|++||||+|.+| .++||++|+.+.+..|+|
T Consensus 69 ------------------eyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarqvGvp 129 (394)
T COG0050 69 ------------------EYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQVGVP 129 (394)
T ss_pred ------------------EEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhhcCCc
Confidence 2333458999999999999999999999999999999999999 899999999999999999
Q ss_pred eEEEEEeccCCcc-HHHHHHHHHHHHHHHhcccC--CCCCEEEecccCcc--------chHHHHHHHHccCCCCCCCCCC
Q 039945 249 HIIILQNKVDLIQ-ENVAINQHEAIMKFIQGTVA--DGAPVVPISAQLKY--------NIDVVCEYIVKKIPIPERNFID 317 (531)
Q Consensus 249 ~iIvviNK~Dl~~-~~~~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~--------gi~~L~~~L~~~l~~~~~~~~~ 317 (531)
.+++++||+|+++ ++-++....+++++|..+.. .+.|++.-||+..- -|.+|++++.+++|.|.++.++
T Consensus 130 ~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dk 209 (394)
T COG0050 130 YIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDK 209 (394)
T ss_pred EEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcccc
Confidence 9999999999997 55556666789999987654 47899999987632 3789999999999999999999
Q ss_pred CCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEe
Q 039945 318 PPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAV 397 (531)
Q Consensus 318 ~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~ 397 (531)
||+|+|.++|++.+ +|+|++|+|.+|+|++||.+.+-... .+.+..+.+++++++.++++.
T Consensus 210 PflmpvEdvfsIsg--------rgtvvtGrVeRG~lkvg~eveivG~~-----------~~~kttvtgvemfrk~ld~~~ 270 (394)
T COG0050 210 PFLMPVEDVFSISG--------RGTVVTGRVERGILKVGEEVEIVGIK-----------ETQKTTVTGVEMFRKLLDEGQ 270 (394)
T ss_pred cccccceeeEEEcC--------ceeEEEEEEeeeeeccCCEEEEeccc-----------ccceeEEEhHHHHHHHHhccc
Confidence 99999999999987 89999999999999999999986432 114678999999999999999
Q ss_pred cCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeecee
Q 039945 398 PGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMS 477 (531)
Q Consensus 398 aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~ 477 (531)
||++|++-|+ ++.++++.||+||+.|++.. ..++|+|++++|.+..+.++ +|+-.|+++.+|..+..
T Consensus 271 AGdnvg~llR---g~~r~~veRGqvLakpgsi~-ph~kfeaevyvL~keeggrh---------tpff~~yrpqfyfRttD 337 (394)
T COG0050 271 AGDNVGVLLR---GVKREDVERGQVLAKPGSIK-PHTKFEAEVYVLSKEEGGRH---------TPFFHGYRPQFYFRTTD 337 (394)
T ss_pred cCCCcceEEE---eccccceecceEeecCCccc-ccceeeEEEEEEecccCCCC---------CCcccCccceeEEEeee
Confidence 9999999999 99999999999999998764 37899999999998766655 68889999999999999
Q ss_pred eeEEEEEecC-------c--eEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEee
Q 039945 478 TGARVLAVKN-------D--LAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 478 ~~~~v~~i~~-------~--~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
+++.+..-.. + .+.++|.+|+.+++|.||.+| ..|||+|.|.|++
T Consensus 338 Vtg~i~l~eg~emvmpgdnv~~~veLi~pia~e~G~rFaIr----eGgrtvgaGvV~~ 391 (394)
T COG0050 338 VTGAITLPEGVEMVMPGDNVKMVVELIHPIAMEEGLRFAIR----EGGRTVGAGVVTK 391 (394)
T ss_pred eeeeEeccCCcceecCCCceEEEEEEeeeeecCCCCEEEEE----eCCeeeeeeEEee
Confidence 9986655443 2 566678999999999999999 4999999999985
No 19
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=1.3e-54 Score=470.85 Aligned_cols=337 Identities=25% Similarity=0.332 Sum_probs=294.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
.|+++||+|||||||+++|+|...+++.+|.++|+|++++|+.+... .
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~----------------------------~---- 49 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP----------------------------D---- 49 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC----------------------------C----
Confidence 58999999999999999999998899999999999999987543110 0
Q ss_pred ccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHH
Q 039945 187 CRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAI 266 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~ 266 (531)
...++|||||||++|.++|..++..+|++++|||++++ ..+|+++|+.++..++++++|+|+||+|+++.+...
T Consensus 50 -----g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg-~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~ 123 (614)
T PRK10512 50 -----GRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDG-VMAQTREHLAILQLTGNPMLTVALTKADRVDEARIA 123 (614)
T ss_pred -----CcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHH
Confidence 15689999999999999999999999999999999998 899999999999999988788999999999877777
Q ss_pred HHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEE
Q 039945 267 NQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGG 346 (531)
Q Consensus 267 ~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G 346 (531)
...+++.++++..+....++|++||++|+|+++|+++|.. ++.+.++.+.||+|+|+++|++++ .|+|++|
T Consensus 124 ~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~-~~~~~~~~~~~~rl~Id~vf~v~G--------~GtVvtG 194 (614)
T PRK10512 124 EVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQ-LPEREHAAQHRFRLAIDRAFTVKG--------AGLVVTG 194 (614)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHH-hhccccCcCCCceEEEEEEeccCC--------CeEEEEE
Confidence 7778888888765555689999999999999999999985 555666678999999999999876 8999999
Q ss_pred EEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCcc-ccccccccceeecc
Q 039945 347 SILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPT-LTRADRLVGQVLGE 425 (531)
Q Consensus 347 ~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~-~~~~~i~~G~vl~~ 425 (531)
+|.+|+|++||+|.++|++ ..++|++|+.++.++++|.||++|+++++ + ++..++.+|++|+.
T Consensus 195 tv~sG~l~~Gd~v~i~p~~-------------~~~~VrsIq~~~~~v~~a~aG~rval~l~---g~~~~~~i~rGdvl~~ 258 (614)
T PRK10512 195 TALSGEVKVGDTLWLTGVN-------------KPMRVRGLHAQNQPTEQAQAGQRIALNIA---GDAEKEQINRGDWLLA 258 (614)
T ss_pred EEecceEecCCEEEEcCCC-------------CcEEEEEEecCCcCCCEEeCCCeEEEEec---CCCChhhCCCcCEEeC
Confidence 9999999999999999974 35799999999999999999999999987 5 77889999999998
Q ss_pred CCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCceEEEEeCCeeecccCCE
Q 039945 426 VGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSRGEK 505 (531)
Q Consensus 426 ~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~~v~~~l~~p~~~~~g~r 505 (531)
++.. ..+..+.+ ++.+ ..+|..|+++++|+|+.++.|+|..++...+++.|++|+|+.+|+|
T Consensus 259 ~~~~-~~~~~~~~---~l~~--------------~~~l~~~~~~~~~~gt~~~~~~i~~l~~~~~~l~l~~p~~~~~gdr 320 (614)
T PRK10512 259 DAPP-EPFTRVIV---ELQT--------------HTPLTQWQPLHIHHAASHVTGRVSLLEDNLAELVLDTPLWLADNDR 320 (614)
T ss_pred CCCC-ccceeEEE---EEcC--------------CccCCCCCEEEEEEcccEEEEEEEEcCCeEEEEEECCcccccCCCE
Confidence 7543 34454433 3432 3689999999999999999999999988899999999999999999
Q ss_pred EEEEeccCCCceEEEEEEEee
Q 039945 506 IALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 506 ~ilr~~~~~~~~tig~G~I~~ 526 (531)
|+||+- +..+|+|.|.|..
T Consensus 321 ~ilr~~--s~~~tigGg~Vld 339 (614)
T PRK10512 321 LVLRDI--SARNTLAGARVVM 339 (614)
T ss_pred EEEEeC--CCCEEEEEEEEcc
Confidence 999964 3459999999975
No 20
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=2.1e-54 Score=456.08 Aligned_cols=344 Identities=25% Similarity=0.369 Sum_probs=294.4
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHH---CCC-------------------------cCccccceecceEeeecceeeeee
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAIS---GVQ-------------------------TVRFKNELERNITIKLGYANAKIY 153 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~---g~~-------------------------~~~~~~e~~~git~~~~~~~~~~~ 153 (531)
.++.+||+++||+|+|||||+++|+ |.. .++.++|+++|+|+++.+..+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-- 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-- 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc--
Confidence 3677999999999999999999997 321 3455789999999998764321
Q ss_pred cccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC--C
Q 039945 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC--P 231 (531)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~--~ 231 (531)
+. +..++|||||||++|.+++..++..+|++++|+|++.+. .
T Consensus 82 ---------------------------~~---------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~ 125 (426)
T TIGR00483 82 ---------------------------TD---------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEV 125 (426)
T ss_pred ---------------------------cC---------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCccc
Confidence 11 268999999999999999999999999999999998762 3
Q ss_pred CcchHHHHHHHHHcCCceEEEEEeccCCcc--HHHHHHHHHHHHHHHhcccC--CCCCEEEecccCccchHH--------
Q 039945 232 QPQTSEHLAAVEIMRLQHIIILQNKVDLIQ--ENVAINQHEAIMKFIQGTVA--DGAPVVPISAQLKYNIDV-------- 299 (531)
Q Consensus 232 ~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~--~~~~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~gi~~-------- 299 (531)
..++.+|+.++..++.+++|+|+||+|+.+ .+..+...+++.++++..+. ...+++++||++|+|+++
T Consensus 126 ~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~ 205 (426)
T TIGR00483 126 QPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWY 205 (426)
T ss_pred CCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccc
Confidence 567888888888888888999999999974 34455666777777765432 357899999999999974
Q ss_pred ----HHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCcee
Q 039945 300 ----VCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIK 375 (531)
Q Consensus 300 ----L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~ 375 (531)
|+++|. .++.|.+..+.||+|+|+++|.+++ .|+|++|+|.+|.|++||.|.++|.+
T Consensus 206 ~g~~l~~~l~-~~~~~~~~~~~p~r~~i~~v~~~~g--------~G~vv~G~v~~G~i~~gd~v~i~P~~---------- 266 (426)
T TIGR00483 206 KGKTLLEALD-ALEPPEKPTDKPLRIPIQDVYSITG--------VGTVPVGRVETGVLKPGDKVVFEPAG---------- 266 (426)
T ss_pred cchHHHHHHh-cCCCCCCccCCCcEEEEEEEEecCC--------CeEEEEEEEccceeecCCEEEECCCC----------
Confidence 999997 5777777788999999999998876 89999999999999999999999974
Q ss_pred eccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCc
Q 039945 376 CTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSE 455 (531)
Q Consensus 376 ~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~ 455 (531)
..++|++|+.++.++++|.|||+|+++|+ +++..++++|++|++++.+|..+++|+|++.||++
T Consensus 267 ---~~~~VksI~~~~~~~~~a~aG~~v~i~l~---~i~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~---------- 330 (426)
T TIGR00483 267 ---VSGEVKSIEMHHEQIEQAEPGDNIGFNVR---GVSKKDIRRGDVCGHPDNPPKVAKEFTAQIVVLQH---------- 330 (426)
T ss_pred ---cEEEEEEEEECCcccCEEcCCCEEEEEEC---CCChhhcccceEEecCCCCCceeeEEEEEEEEECC----------
Confidence 35899999999999999999999999998 88888999999999988777888999999999986
Q ss_pred ccccccccCCCCEEEEEeeceeeeEEEEEecC--------------------c--eEEEEeCCeeeccc------CCEEE
Q 039945 456 RQGKVSKLAKQEILMLNIGSMSTGARVLAVKN--------------------D--LAKLQLTSPVCTSR------GEKIA 507 (531)
Q Consensus 456 ~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~--------------------~--~v~~~l~~p~~~~~------g~r~i 507 (531)
++++..|+++++|+|+.++.|+|..+.. + .|+|.+.+|+|+++ ++||+
T Consensus 331 ----~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~~grf~ 406 (426)
T TIGR00483 331 ----PGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIEAVKEIPPLGRFA 406 (426)
T ss_pred ----CCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeEEeecccCCCCccEE
Confidence 3689999999999999999999998732 1 78999999999998 57999
Q ss_pred EEeccCCCceEEEEEEEee
Q 039945 508 LSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 508 lr~~~~~~~~tig~G~I~~ 526 (531)
||+ .|+|||+|.|+.
T Consensus 407 lr~----~g~tv~~G~v~~ 421 (426)
T TIGR00483 407 IRD----MGQTVAAGMIID 421 (426)
T ss_pred EEE----CCCEEEEEEEEE
Confidence 997 689999999974
No 21
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=2e-52 Score=436.70 Aligned_cols=336 Identities=24% Similarity=0.310 Sum_probs=283.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC------------------------------CcCccccceecceEeeecceeeeeecc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV------------------------------QTVRFKNELERNITIKLGYANAKIYKC 155 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~------------------------------~~~~~~~e~~~git~~~~~~~~~~~~~ 155 (531)
+||+++||+|+|||||+++|+.. ..++.++|++||+|+++++..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~----- 75 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF----- 75 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE-----
Confidence 47999999999999999999611 1245678999999999876533
Q ss_pred cCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch
Q 039945 156 EDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT 235 (531)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt 235 (531)
++. ++.++|||||||++|.+++..++..+|++|+|||+..+ ..+|+
T Consensus 76 ------------------------~~~---------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G-~~~qt 121 (406)
T TIGR02034 76 ------------------------STD---------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG-VLEQT 121 (406)
T ss_pred ------------------------ccC---------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC-Ccccc
Confidence 111 26899999999999999999999999999999999998 89999
Q ss_pred HHHHHHHHHcCCceEEEEEeccCCccH--HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHH------------HH
Q 039945 236 SEHLAAVEIMRLQHIIILQNKVDLIQE--NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDV------------VC 301 (531)
Q Consensus 236 ~e~l~~~~~~~~~~iIvviNK~Dl~~~--~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~------------L~ 301 (531)
++|+.++..++++++|+|+||+|+.++ +.+++..+++.++++.......+++|+||++|+|+++ |+
T Consensus 122 ~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~ 201 (406)
T TIGR02034 122 RRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLL 201 (406)
T ss_pred HHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHH
Confidence 999999999999889999999999853 3344555666666665545567899999999999974 78
Q ss_pred HHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeecccee
Q 039945 302 EYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYS 381 (531)
Q Consensus 302 ~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~ 381 (531)
++|. .++.|.+..+.||+|+|+++|.... .+.| ++|+|.+|+|++||.|.++|++ ..+
T Consensus 202 ~~L~-~~~~~~~~~~~p~r~~i~~v~~~~~------~~~g--~~G~v~~G~l~~gd~v~i~P~~-------------~~~ 259 (406)
T TIGR02034 202 EILE-TVEVERDAQDLPLRFPVQYVNRPNL------DFRG--YAGTIASGSVHVGDEVVVLPSG-------------RSS 259 (406)
T ss_pred HHHH-hcCCCCCcCCCCcccceEEEeecCC------CcEE--EEEEEecceeecCCEEEEeCCC-------------cEE
Confidence 8887 5677777788999999999875421 1234 6899999999999999999974 358
Q ss_pred eeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCccccccc
Q 039945 382 RIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVS 461 (531)
Q Consensus 382 ~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~ 461 (531)
+|++|+.++.++++|.|||+|+++++ + ..++.+|++|++++.+|.+++.|+|++.|+.+ .
T Consensus 260 ~VksI~~~~~~~~~a~~G~~v~l~l~---~--~~~i~rG~vl~~~~~~~~~~~~f~a~i~~l~~---------------~ 319 (406)
T TIGR02034 260 RVARIVTFDGDLEQARAGQAVTLTLD---D--EIDISRGDLLAAADSAPEVADQFAATLVWMAE---------------E 319 (406)
T ss_pred EEEEEEECCcccCEeCCCCEEEEEEC---C--ccccCCccEEEcCCCCCCcceEEEEEEEEeCh---------------h
Confidence 99999999999999999999999987 2 35789999999999888889999999999863 5
Q ss_pred ccCCCCEEEEEeeceeeeEEEEEecC------------------c--eEEEEeCCeeecccCC------EEEEEeccCCC
Q 039945 462 KLAKQEILMLNIGSMSTGARVLAVKN------------------D--LAKLQLTSPVCTSRGE------KIALSRRVEKH 515 (531)
Q Consensus 462 ~l~~~~~~~l~~g~~~~~~~v~~i~~------------------~--~v~~~l~~p~~~~~g~------r~ilr~~~~~~ 515 (531)
+|..|+++++|+|+.+++|+|..+.. + .|+|++++|+|+++++ ||+|+|+ ..
T Consensus 320 ~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~~~~~l~~~~~~~v~l~~~~p~~~~~~~~~~~lGr~~l~d~--~~ 397 (406)
T TIGR02034 320 PLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKGAAKSLELNEIGRVNLSLDEPIAFDPYAENRTTGAFILIDR--LS 397 (406)
T ss_pred hcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcccCCcccCCCCEEEEEEEECCeeccCcccCCCcceeEEEEEC--CC
Confidence 79999999999999999999998863 1 7899999999999998 9999654 36
Q ss_pred ceEEEEEEE
Q 039945 516 WRLIGWGQI 524 (531)
Q Consensus 516 ~~tig~G~I 524 (531)
++|||+|.|
T Consensus 398 ~~tva~G~I 406 (406)
T TIGR02034 398 NRTVGAGMI 406 (406)
T ss_pred CCeEEEEeC
Confidence 899999986
No 22
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=3.8e-52 Score=440.86 Aligned_cols=341 Identities=23% Similarity=0.282 Sum_probs=284.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC------------------------------CcCccccceecceEeeecceeeee
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV------------------------------QTVRFKNELERNITIKLGYANAKI 152 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~------------------------------~~~~~~~e~~~git~~~~~~~~~~ 152 (531)
++.++|+++||+|+|||||+++|+.. ..|+.++|++||+|+++++..+.
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~- 103 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS- 103 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec-
Confidence 56699999999999999999999721 12345689999999998764321
Q ss_pred ecccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCC
Q 039945 153 YKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQ 232 (531)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~ 232 (531)
+. ...++|||||||++|.+++..++..+|++|+|||+..+ ..
T Consensus 104 ----------------------------~~---------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G-~~ 145 (474)
T PRK05124 104 ----------------------------TE---------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG-VL 145 (474)
T ss_pred ----------------------------cC---------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-cc
Confidence 11 26899999999999999999999999999999999998 89
Q ss_pred cchHHHHHHHHHcCCceEEEEEeccCCccH--HHHHHHHHHHHHHHhccc-CCCCCEEEecccCccchHH----------
Q 039945 233 PQTSEHLAAVEIMRLQHIIILQNKVDLIQE--NVAINQHEAIMKFIQGTV-ADGAPVVPISAQLKYNIDV---------- 299 (531)
Q Consensus 233 ~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~--~~~~~~~~~i~~~l~~~~-~~~~~ii~iSa~~g~gi~~---------- 299 (531)
.|+++|+.++..++++++|+++||+|+.++ +.+.+..+++.++++... ....+++|+||++|+|+++
T Consensus 146 ~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G 225 (474)
T PRK05124 146 DQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSG 225 (474)
T ss_pred ccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccch
Confidence 999999999999998889999999999853 334555566666665433 3467899999999999864
Q ss_pred --HHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeec
Q 039945 300 --VCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCT 377 (531)
Q Consensus 300 --L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~ 377 (531)
|+++|. .++.|.+..+.|++|+|++++.... ...| +.|+|.+|+|++||+|+++|++
T Consensus 226 ~tLl~~L~-~i~~~~~~~~~p~r~~I~~v~~~~~------~~~g--~~G~V~sG~l~~Gd~v~i~P~~------------ 284 (474)
T PRK05124 226 PTLLEVLE-TVDIQRVVDAQPFRFPVQYVNRPNL------DFRG--YAGTLASGVVKVGDRVKVLPSG------------ 284 (474)
T ss_pred hhHHHHHh-hcCCCCCCCCCCceeeEEEEEecCC------cccc--eEEEEEeEEEecCCEEEEecCC------------
Confidence 677665 6777777788999999999875321 1134 6799999999999999999974
Q ss_pred cceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCccc
Q 039945 378 PIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQ 457 (531)
Q Consensus 378 ~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~ 457 (531)
..++|++|+.++.++++|.|||+|+++|+ + ..++.+|+|||+++.+|.+++.|+|++.||.
T Consensus 285 -~~~~VksI~~~~~~v~~A~aG~~V~l~L~---~--~~~i~rG~VL~~~~~~~~~~~~f~a~i~~l~------------- 345 (474)
T PRK05124 285 -KESNVARIVTFDGDLEEAFAGEAITLVLE---D--EIDISRGDLLVAADEALQAVQHASADVVWMA------------- 345 (474)
T ss_pred -ceEEEEEEEEcCccccCcCCCCEEEEEeC---C--ccccCCccEEECCCCCCccceEEEEEEEEeC-------------
Confidence 35899999999999999999999999986 2 3578999999999888888999999999996
Q ss_pred ccccccCCCCEEEEEeeceeeeEEEEEecC------------------c--eEEEEeCCeeecccCCE------EEEEec
Q 039945 458 GKVSKLAKQEILMLNIGSMSTGARVLAVKN------------------D--LAKLQLTSPVCTSRGEK------IALSRR 511 (531)
Q Consensus 458 ~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~------------------~--~v~~~l~~p~~~~~g~r------~ilr~~ 511 (531)
..+|..|+++++|+|+.+++|+|..|.. + .|+|.+.+|+|++++++ |+|||+
T Consensus 346 --~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~~~~~l~~g~~a~v~l~~~~pv~~e~~~~~~~lGRfil~dr 423 (474)
T PRK05124 346 --EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQREAENLPLNGIGLVELTFDEPLVLDPYQQNRVTGGFIFIDR 423 (474)
T ss_pred --CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcccCccccCCCCEEEEEEEECCeeccccCCcCCcceeEEEEEC
Confidence 2579999999999999999999999852 1 78999999999999975 999765
Q ss_pred cCCCceEEEEEEEee
Q 039945 512 VEKHWRLIGWGQIQA 526 (531)
Q Consensus 512 ~~~~~~tig~G~I~~ 526 (531)
..++|||+|.|++
T Consensus 424 --~~~~tva~G~V~~ 436 (474)
T PRK05124 424 --LTNVTVGAGMVRE 436 (474)
T ss_pred --CCCceEEEEEEec
Confidence 4679999999975
No 23
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-52 Score=403.14 Aligned_cols=343 Identities=24% Similarity=0.320 Sum_probs=296.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC------------------------------cCccccceecceEeeecceeeee
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ------------------------------TVRFKNELERNITIKLGYANAKI 152 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~------------------------------~~~~~~e~~~git~~~~~~~~~~ 152 (531)
+..+|+..+|+++.|||||+++|+-.. .+.++.|+|+||||++.|.++
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF-- 81 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF-- 81 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec--
Confidence 566899999999999999999997210 123468999999999988432
Q ss_pred ecccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCC
Q 039945 153 YKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQ 232 (531)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~ 232 (531)
.+.+++|.+.|||||+.|.++|..+++.||++|++|||..| +.
T Consensus 82 ------------------------------------sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl 124 (431)
T COG2895 82 ------------------------------------STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VL 124 (431)
T ss_pred ------------------------------------ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hH
Confidence 22238999999999999999999999999999999999998 89
Q ss_pred cchHHHHHHHHHcCCceEEEEEeccCCccH--HHHHHHHHHHHHHHhcccCCCCCEEEecccCccch------------H
Q 039945 233 PQTSEHLAAVEIMRLQHIIILQNKVDLIQE--NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNI------------D 298 (531)
Q Consensus 233 ~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~--~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi------------~ 298 (531)
.||+.|..++..+|++++|+++|||||++. +.++++..++..+.++.+.....+||+||+.|+|+ +
T Consensus 125 ~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~Gp 204 (431)
T COG2895 125 EQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGP 204 (431)
T ss_pred HHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCc
Confidence 999999999999999999999999999964 45667777777888877777889999999999998 4
Q ss_pred HHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeecc
Q 039945 299 VVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTP 378 (531)
Q Consensus 299 ~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~ 378 (531)
.|++.|. .+.........+|||||. .|++|+. +++| +.|+|.+|++++||.|+++|++
T Consensus 205 tLLe~LE-~v~i~~~~~~~~~RfPVQ---~V~Rp~~---dfRG--yaGtiasG~v~~Gd~vvvlPsG------------- 262 (431)
T COG2895 205 TLLEILE-TVEIADDRSAKAFRFPVQ---YVNRPNL---DFRG--YAGTIASGSVKVGDEVVVLPSG------------- 262 (431)
T ss_pred cHHHHHh-hccccccccccceeeceE---EecCCCC---cccc--cceeeeccceecCCeEEEccCC-------------
Confidence 6888887 566655566778999995 4666653 4577 7899999999999999999985
Q ss_pred ceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccc
Q 039945 379 IYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQG 458 (531)
Q Consensus 379 ~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~ 458 (531)
...+|+.|..++.++++|.+|+.|++.|. +.+ ++.||++++.++.+|.+...|.|.+.|+..
T Consensus 263 ~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--dei---disRGd~i~~~~~~~~~~~~f~A~vvWm~~------------- 324 (431)
T COG2895 263 KTSRVKRIVTFDGELAQASAGEAVTLVLA--DEI---DISRGDLIVAADAPPAVADAFDADVVWMDE------------- 324 (431)
T ss_pred CeeeEEEEeccCCchhhccCCceEEEEEc--cee---ecccCcEEEccCCCcchhhhcceeEEEecC-------------
Confidence 35899999999999999999999998765 343 788999999999999999999999999974
Q ss_pred cccccCCCCEEEEEeeceeeeEEEEEecCc--------------------eEEEEeCCeeecccCC------EEEEEecc
Q 039945 459 KVSKLAKQEILMLNIGSMSTGARVLAVKND--------------------LAKLQLTSPVCTSRGE------KIALSRRV 512 (531)
Q Consensus 459 ~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~--------------------~v~~~l~~p~~~~~g~------r~ilr~~~ 512 (531)
+||.+|..|.+.+++..+.|+|..|+.. .|++.+..|++++++. .|||.|+.
T Consensus 325 --~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~a~~l~lN~Ig~v~i~~~~pi~fd~Y~~N~atG~FIlID~~ 402 (431)
T COG2895 325 --EPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEGAESLPLNEIGRVRISFDKPIAFDAYAENRATGSFILIDRL 402 (431)
T ss_pred --CCCCCCceEEEEecceEEEEEeeeeEEEEeccccccccccccCCCcceEEEEecCCceeecccccCcccccEEEEEcC
Confidence 7899999999999999999999998742 8899999999999985 79999976
Q ss_pred CCCceEEEEEEEeece
Q 039945 513 EKHWRLIGWGQIQAGT 528 (531)
Q Consensus 513 ~~~~~tig~G~I~~~~ 528 (531)
.+ .|+|+|.|..++
T Consensus 403 tn--~TVgaGmI~~~l 416 (431)
T COG2895 403 TN--GTVGAGMILASL 416 (431)
T ss_pred CC--Cceeceeeechh
Confidence 64 799999999876
No 24
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=2.6e-51 Score=444.11 Aligned_cols=335 Identities=23% Similarity=0.374 Sum_probs=287.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++||+|||||||+++|+|...+++.+|.++|+|++++++.+.. .
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-----------------------------~--- 48 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-----------------------------P--- 48 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-----------------------------C---
Confidence 47999999999999999999998888888999999999998754321 1
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVA 265 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~ 265 (531)
+..++|||||||++|.+++..++..+|++++|||++++ ..+|+.+|+.++..++++++|+|+||+|+++.+..
T Consensus 49 ------~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G-~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~ 121 (581)
T TIGR00475 49 ------DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEG-VMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEI 121 (581)
T ss_pred ------CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHH
Confidence 16899999999999999999999999999999999998 78999999999999998889999999999987766
Q ss_pred HHHHHHHHHHHhcccCC-CCCEEEecccCccchHHHHHHHHccCCCC-CCCCCCCCEEEEEEeeeecCCCCcccCCCceE
Q 039945 266 INQHEAIMKFIQGTVAD-GAPVVPISAQLKYNIDVVCEYIVKKIPIP-ERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGV 343 (531)
Q Consensus 266 ~~~~~~i~~~l~~~~~~-~~~ii~iSa~~g~gi~~L~~~L~~~l~~~-~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v 343 (531)
....+++.++++.+... +.+++++||++|+|+++|+++|...++.. ....+.||+|+|+++|++++ .|+|
T Consensus 122 ~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G--------~GtV 193 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKG--------AGTV 193 (581)
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCC--------cEEE
Confidence 66667777777654333 68999999999999999999987654332 12357899999999999876 7999
Q ss_pred EEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceee
Q 039945 344 AGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVL 423 (531)
Q Consensus 344 ~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl 423 (531)
++|+|.+|+|++||+|.++|++ ..++|++|+.++.++++|.||++|+++|+ +++.+++.+|.++
T Consensus 194 v~G~v~~G~i~~Gd~l~i~P~~-------------~~~~Vr~iq~~~~~v~~a~aG~rval~L~---~i~~~~i~rG~~~ 257 (581)
T TIGR00475 194 VTGTAFSGEVKVGDNLRLLPIN-------------HEVRVKAIQAQNQDVEIAYAGQRIALNLM---DVEPESLKRGLLI 257 (581)
T ss_pred EEEEEecceEecCCEEEECCCC-------------ceEEEeEEEECCccCCEEECCCEEEEEeC---CCCHHHcCCceEE
Confidence 9999999999999999999974 36899999999999999999999999998 8888999999888
Q ss_pred ccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCceEEEEeCCeeecccC
Q 039945 424 GEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSRG 503 (531)
Q Consensus 424 ~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~~v~~~l~~p~~~~~g 503 (531)
+.+...+. .+.+.+.. ..++..|+++++|+|+.++.|++..++.+.+++.+++|+|+..|
T Consensus 258 ~~~~~~~~---~~~~~~~~-----------------~~~l~~~~~~~~~~gt~~~~~~i~~l~~~~~~l~l~~P~~~~~g 317 (581)
T TIGR00475 258 LTPEDPKL---RVVVKFIA-----------------EVPLLELQPYHIAHGMSVTTGKISLLDKGIALLTLDAPLILAKG 317 (581)
T ss_pred cCCCCCCc---eEEEEEEc-----------------CCccCCCCeEEEEEeceEEEEEEEEccCcEEEEEECCceecCCC
Confidence 76653311 22222222 14788999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCceEEEEEEEee
Q 039945 504 EKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 504 ~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
+||++|+ +..+|+|.|.|..
T Consensus 318 d~~i~r~---~~~~tiggg~vl~ 337 (581)
T TIGR00475 318 DKLVLRD---SSGNFLAGARVLE 337 (581)
T ss_pred CEEEEEe---CCCEEEeeeEEec
Confidence 9999997 3569999999974
No 25
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=5.6e-52 Score=402.99 Aligned_cols=366 Identities=22% Similarity=0.340 Sum_probs=311.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH-CCC----------cCccccceecceEeeecceeeeeecccCCCCCCCccccccCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS-GVQ----------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGS 171 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~-g~~----------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 171 (531)
.++++|+.+||+|+|||||+++|+ |.. .++++||.++|.|.++++. +|.+++ +.+...++--.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~---v~Gf~d---gk~~rlknPld 188 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLR---VYGFDD---GKVVRLKNPLD 188 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEE---EEEecC---CceEeecCccc
Confidence 677999999999999999999996 332 3467899999999998764 556543 22221111100
Q ss_pred CCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce
Q 039945 172 GKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH 249 (531)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~ 249 (531)
..+.. .......+.+.|+||-||+.|.+++++++ +..|+.+|+|.|++| .+..++||+-++..++.|
T Consensus 189 --~aE~~-------~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG-~~~~tkEHLgi~~a~~lP- 257 (527)
T COG5258 189 --EAEKA-------AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG-VTKMTKEHLGIALAMELP- 257 (527)
T ss_pred --HHHHh-------HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC-cchhhhHhhhhhhhhcCC-
Confidence 00000 11123348899999999999999999998 779999999999999 899999999999999976
Q ss_pred EEEEEeccCCccHHHHHHHHHHHHHHHhccc----------------------CCCCCEEEecccCccchHHHHHHHHcc
Q 039945 250 IIILQNKVDLIQENVAINQHEAIMKFIQGTV----------------------ADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 250 iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~----------------------~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
+|+|++|+|+.+.+.+....+++...|+-.+ ...+|+|.+|+.+|+|++-|.+.+. .
T Consensus 258 viVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~-~ 336 (527)
T COG5258 258 VIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL-L 336 (527)
T ss_pred EEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH-h
Confidence 8999999999999999989999888876321 1256999999999999998888887 6
Q ss_pred CCCCCC-CCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEe
Q 039945 308 IPIPER-NFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSL 386 (531)
Q Consensus 308 l~~~~~-~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si 386 (531)
+|.... +...||+|+|++.|+|.+ +|+|+.|.|.+|.++.||+++++|. ++|+| ..++|+||
T Consensus 337 Lp~rr~~~d~g~flmYId~iYsVtG--------VGtVvsGsV~~G~l~~gd~vllGP~-----~~G~f----r~v~vkSI 399 (527)
T COG5258 337 LPKRRRWDDEGPFLMYIDKIYSVTG--------VGTVVSGSVKSGILHVGDTVLLGPF-----KDGKF----REVVVKSI 399 (527)
T ss_pred CCcccccCCCCCeEEEEEeeEEEee--------eEEEEeeeEEeeeeccCCEEEEccC-----CCCcE----EEEEEEEE
Confidence 776533 567889999999999987 8999999999999999999999996 67998 57999999
Q ss_pred eecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCC
Q 039945 387 FAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQ 466 (531)
Q Consensus 387 ~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~ 466 (531)
++|+-.+++|.||.+++++++ ++..+.+.+||||+.+ ..|.+.+.|+|++++|+|| +.|+.|
T Consensus 400 emh~~rvdsa~aG~iig~Al~---gv~~e~lerGMVl~~~-~~pkaVref~AeV~vl~HP--------------T~I~aG 461 (527)
T COG5258 400 EMHHYRVDSAKAGSIIGIALK---GVEKEELERGMVLSAG-ADPKAVREFDAEVLVLRHP--------------TTIRAG 461 (527)
T ss_pred EEeeEEeccccCCcEEEEEec---ccCHHHHhcceEecCC-CCchhhheecceEEEEeCC--------------cEEecC
Confidence 999999999999999999999 9999999999999887 7788999999999999994 689999
Q ss_pred CEEEEEeeceeeeEEEEEecCc--------eEEEEeC-CeeecccCCEEEEEeccCCCceEEEEEEEee
Q 039945 467 EILMLNIGSMSTGARVLAVKND--------LAKLQLT-SPVCTSRGEKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 467 ~~~~l~~g~~~~~~~v~~i~~~--------~v~~~l~-~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
+..++|.-+++..+++..++.+ .+++.|. +|..++.||+|+|| +|++.|+|.|++
T Consensus 462 ye~v~H~etI~e~~~f~~id~~~L~~GD~g~vr~~fkyrP~~v~eGQ~fvFR-----eGrskgvG~v~~ 525 (527)
T COG5258 462 YEPVFHYETIREAVYFEEIDKGFLMPGDRGVVRMRFKYRPHHVEEGQKFVFR-----EGRSKGVGRVIR 525 (527)
T ss_pred ceeeeEeeEeeheeEEEEcccccccCCCcceEEEEEEeCchhhccCcEEEEe-----cCCCccceEEec
Confidence 9999999999999999999875 7888865 99999999999999 899999999975
No 26
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=3.4e-50 Score=442.56 Aligned_cols=342 Identities=23% Similarity=0.299 Sum_probs=285.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC------------------------------cCccccceecceEeeecceeeee
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ------------------------------TVRFKNELERNITIKLGYANAKI 152 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~------------------------------~~~~~~e~~~git~~~~~~~~~~ 152 (531)
++.++|+++||+|+|||||+|+|+... .++.++|++||+|++.++..+
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~-- 99 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF-- 99 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE--
Confidence 566899999999999999999997311 134468889999998876432
Q ss_pred ecccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCC
Q 039945 153 YKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQ 232 (531)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~ 232 (531)
++. +..++|+|||||++|.+++..++..+|+++||||+..+ ..
T Consensus 100 ---------------------------~~~---------~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g-~~ 142 (632)
T PRK05506 100 ---------------------------ATP---------KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG-VL 142 (632)
T ss_pred ---------------------------ccC---------CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC-cc
Confidence 111 26899999999999999999999999999999999998 78
Q ss_pred cchHHHHHHHHHcCCceEEEEEeccCCcc--HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchH------------
Q 039945 233 PQTSEHLAAVEIMRLQHIIILQNKVDLIQ--ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNID------------ 298 (531)
Q Consensus 233 ~qt~e~l~~~~~~~~~~iIvviNK~Dl~~--~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~------------ 298 (531)
+|+.+|+.++..++++++|+++||+|+++ .+.+++..+++.++++.+.....+++|+||++|.|++
T Consensus 143 ~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~ 222 (632)
T PRK05506 143 TQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGP 222 (632)
T ss_pred ccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHh
Confidence 99999999999999888999999999985 3345556667777776555556789999999999987
Q ss_pred HHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeecc
Q 039945 299 VVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTP 378 (531)
Q Consensus 299 ~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~ 378 (531)
.|++.|. .++.|.+..+.||+|+|+++|+..- ...| ++|+|.+|+|++||+|.++|++
T Consensus 223 tL~~~l~-~~~~~~~~~~~p~r~~i~~v~~~~~------~~~g--~~G~v~~G~l~~gd~v~i~P~~------------- 280 (632)
T PRK05506 223 SLLEHLE-TVEIASDRNLKDFRFPVQYVNRPNL------DFRG--FAGTVASGVVRPGDEVVVLPSG------------- 280 (632)
T ss_pred HHHHHHh-cCCCCCCcCCCCceeeEEEEEecCC------CceE--EEEEEecceeecCCEEEEcCCC-------------
Confidence 5888887 4666666678999999999875321 1134 6799999999999999999974
Q ss_pred ceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccc
Q 039945 379 IYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQG 458 (531)
Q Consensus 379 ~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~ 458 (531)
..++|++|++++.++++|.|||+|+++|+ + ..++.+|+|||+++.+|++++.|+|++.||++
T Consensus 281 ~~~~VksI~~~~~~~~~a~aG~~v~i~l~---~--~~~i~rG~vL~~~~~~~~~~~~f~a~i~~l~~------------- 342 (632)
T PRK05506 281 KTSRVKRIVTPDGDLDEAFAGQAVTLTLA---D--EIDISRGDMLARADNRPEVADQFDATVVWMAE------------- 342 (632)
T ss_pred ceEEEEEEEECCceeCEEcCCCeEEEEec---C--ccccCCccEEecCCCCCcceeEEEEEEEEecc-------------
Confidence 35899999999999999999999999987 2 34789999999999888889999999999974
Q ss_pred cccccCCCCEEEEEeeceeeeEEEEEecC------------------c--eEEEEeCCeeecccCC------EEEEEecc
Q 039945 459 KVSKLAKQEILMLNIGSMSTGARVLAVKN------------------D--LAKLQLTSPVCTSRGE------KIALSRRV 512 (531)
Q Consensus 459 ~~~~l~~~~~~~l~~g~~~~~~~v~~i~~------------------~--~v~~~l~~p~~~~~g~------r~ilr~~~ 512 (531)
.++..|+++++|+|+.+++|+|..+.. + .|+|++++|+|+++++ ||+|||+
T Consensus 343 --~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~~~p~~l~~g~~~~v~l~~~~pi~~e~~~~~~~lGRfilrdr- 419 (632)
T PRK05506 343 --EPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLERLAAKTLELNEIGRCNLSTDAPIAFDPYARNRTTGSFILIDR- 419 (632)
T ss_pred --cccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCccCCcceeCCCCEEEEEEEECCEEeeeeccccccCceEEEEec-
Confidence 357799999999999999999998842 0 7899999999999997 4999765
Q ss_pred CCCceEEEEEEEeec
Q 039945 513 EKHWRLIGWGQIQAG 527 (531)
Q Consensus 513 ~~~~~tig~G~I~~~ 527 (531)
..++|||+|.|..-
T Consensus 420 -~~~~Tva~G~I~~~ 433 (632)
T PRK05506 420 -LTNATVGAGMIDFA 433 (632)
T ss_pred -cCCceEEEEEECcc
Confidence 46799999999753
No 27
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-50 Score=401.74 Aligned_cols=337 Identities=26% Similarity=0.371 Sum_probs=297.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
.|+..||.++|||||+.+|+|...++.++|.+||+|++++|++.+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~---------------------------------- 47 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL---------------------------------- 47 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC----------------------------------
Confidence 5899999999999999999999999999999999999999976422
Q ss_pred ccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHH
Q 039945 187 CRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAI 266 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~ 266 (531)
.++.+.|||+|||++|+.+|+.++...|+++||||+++| +.+||.||+.+++.+|+++.++|+||+|+++..+.+
T Consensus 48 ----~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG-l~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e 122 (447)
T COG3276 48 ----EDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG-LMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIE 122 (447)
T ss_pred ----CCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC-cchhhHHHHHHHHhcCCCceEEEEeccccccHHHHH
Confidence 015799999999999999999999999999999999999 899999999999999999999999999999988777
Q ss_pred HHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEE
Q 039945 267 NQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGG 346 (531)
Q Consensus 267 ~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G 346 (531)
+..+++.+.+. ..+.++|++|+++|+||++|.+.|.+....+.++.+.||+++||++|+|+| .|+|++|
T Consensus 123 ~~i~~Il~~l~---l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKG--------vGTVVtG 191 (447)
T COG3276 123 QKIKQILADLS---LANAKIFKTSAKTGRGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKG--------VGTVVTG 191 (447)
T ss_pred HHHHHHHhhcc---cccccccccccccCCCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEecc--------ccEEEEe
Confidence 77666666554 567899999999999999999999965545778889999999999999987 8999999
Q ss_pred EEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccC
Q 039945 347 SILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEV 426 (531)
Q Consensus 347 ~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~ 426 (531)
++.+|.+++||++++.|.+ ..++|+|||+++.++++|.||++|+++|+ ++..+++.||++|..+
T Consensus 192 tv~sG~V~v~D~L~l~p~~-------------k~v~VRsIq~~d~d~~~a~AG~RVgLaL~---~v~~eei~RG~~L~~~ 255 (447)
T COG3276 192 TVLSGEVKVGDKLYLSPIN-------------KEVRVRSIQAHDVDVEEAKAGQRVGLALK---GVEKEEIERGDWLLKP 255 (447)
T ss_pred EEeeeeEEECCEEEEecCC-------------CeEEEEeeeecCcchhhccccceeeeecC---CCCHHHhhcccEeccC
Confidence 9999999999999999985 46899999999999999999999999999 8888999999999998
Q ss_pred CCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCceEEEEeCCeeecccCCEE
Q 039945 427 GSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSRGEKI 506 (531)
Q Consensus 427 ~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~~v~~~l~~p~~~~~g~r~ 506 (531)
+.. .+++.+.+.+.|... ...++.+++.+++|+|+++++|++..++.+ +.+.+..|+..-.++++
T Consensus 256 ~~~-~v~~~~~~~~~i~~~-------------~~~~l~~~~~~hi~~g~~~~~~~i~~l~~~-~~l~~~k~i~~~~~~~l 320 (447)
T COG3276 256 EPL-EVTTRLIVELEIDPL-------------FKKTLKQGQPVHIHVGLRSVTGRIVPLEKN-AELNLVKPIALGDNDRL 320 (447)
T ss_pred CCC-CcceEEEEEEEeccc-------------cccccCCCceEEEEEeccccceEeeecccc-ceeeeecccccccCceE
Confidence 766 567888888877642 136899999999999999999999988776 77888899999999999
Q ss_pred EEEeccCCCceEEEEEEEee
Q 039945 507 ALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 507 ilr~~~~~~~~tig~G~I~~ 526 (531)
+||+..+ ..+.+.+.|..
T Consensus 321 ~lr~~~a--~~~~~g~rvl~ 338 (447)
T COG3276 321 VLRDNSA--VIKLAGARVLS 338 (447)
T ss_pred EEEcccc--eeeeccceEEe
Confidence 9997544 35555555543
No 28
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-48 Score=397.81 Aligned_cols=344 Identities=21% Similarity=0.302 Sum_probs=294.7
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHH---CCC-------------------------cCccccceecceEeeecceeeeee
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAIS---GVQ-------------------------TVRFKNELERNITIKLGYANAKIY 153 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~---g~~-------------------------~~~~~~e~~~git~~~~~~~~~~~ 153 (531)
.+.+++.+++||+|+|||||+++|+ |.- .+...+|++||+|.+++.++++
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe-- 251 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE-- 251 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe--
Confidence 3578999999999999999999997 221 1344699999999999875431
Q ss_pred cccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC---
Q 039945 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC--- 230 (531)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~--- 230 (531)
+..+.++|+|+|||.+|+.+|+.++.+||+++|||||+.+.
T Consensus 252 ------------------------------------s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~ 295 (603)
T KOG0458|consen 252 ------------------------------------SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFES 295 (603)
T ss_pred ------------------------------------cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhh
Confidence 12378999999999999999999999999999999999652
Q ss_pred ---CCcchHHHHHHHHHcCCceEEEEEeccCCccH--HHHHHHHHHHHHHHh---cccCCCCCEEEecccCccch-----
Q 039945 231 ---PQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE--NVAINQHEAIMKFIQ---GTVADGAPVVPISAQLKYNI----- 297 (531)
Q Consensus 231 ---~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~--~~~~~~~~~i~~~l~---~~~~~~~~ii~iSa~~g~gi----- 297 (531)
...|++||..+++.+|+..+||++||||+++| ++++++...+..+|+ ++...++.|||+|+.+|+|+
T Consensus 296 gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~ 375 (603)
T KOG0458|consen 296 GFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQ 375 (603)
T ss_pred ccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccccc
Confidence 46799999999999999999999999999976 467778888888884 33445679999999999998
Q ss_pred ----------HHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCcee
Q 039945 298 ----------DVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVV 367 (531)
Q Consensus 298 ----------~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~ 367 (531)
+.|++.|.. +..|.+..+.||+|.|.+++...+ .|..++|+|++|.|+.||+|+++|+.
T Consensus 376 ~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~ltIsdi~~~~~--------~~~~i~gkiesG~iq~gqkl~i~~s~-- 444 (603)
T KOG0458|consen 376 ENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRLTISDIYPLPS--------SGVSISGKIESGYIQPGQKLYIMTSR-- 444 (603)
T ss_pred chhhhhhhcCChHHHHHhh-ccCCCCcccCCeEEEhhheeecCC--------CeeEEEEEEeccccccCCEEEEecCc--
Confidence 357888875 777888899999999999997654 67889999999999999999999984
Q ss_pred cCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeec-cCCCccceeEEEEEEEEEeeee
Q 039945 368 KDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLG-EVGSLPEVFVELEVNFFLLRRL 446 (531)
Q Consensus 368 ~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~-~~~~~p~~~~~f~a~v~~l~~~ 446 (531)
..+.|++|.+++++..+|.|||.|.+.|. ++....+..|++++ .+..+......|.+++.||+..
T Consensus 445 -----------e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~---~i~~n~v~~g~i~~~~~~~~i~~~~~f~~~~~~f~~~ 510 (603)
T KOG0458|consen 445 -----------EDATVKGLTSNDEPKTWAVAGDNVSLKLP---GILPNLVQVGDIADSGPQFPISKTTRFVARITTFDIN 510 (603)
T ss_pred -----------ceEEEEeeecCCCcceeEeeCCEEEEecC---ccChhhcccceeeecCCCccccceeEEEEEEEEeecc
Confidence 46899999999999999999999999998 78888999999999 6767777778999999999752
Q ss_pred cccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCc----------------------eEEEEeCCeeecccCC
Q 039945 447 LGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKND----------------------LAKLQLTSPVCTSRGE 504 (531)
Q Consensus 447 ~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~----------------------~v~~~l~~p~~~~~g~ 504 (531)
.|+..|.++.+|.|+...+|++..+-.. ++.++..+|+|++.+.
T Consensus 511 --------------~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vele~~~pI~~etf~ 576 (603)
T KOG0458|consen 511 --------------LPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVELETERPICLETFA 576 (603)
T ss_pred --------------ccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeeccccCchhhhhhh
Confidence 5888999999999999998888776321 6677788999999773
Q ss_pred ------EEEEEeccCCCceEEEEEEEee
Q 039945 505 ------KIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 505 ------r~ilr~~~~~~~~tig~G~I~~ 526 (531)
||++|. .|+|||+|+|++
T Consensus 577 ~~~~lgr~vlr~----~g~TiAaG~V~~ 600 (603)
T KOG0458|consen 577 ENRALGRVVLRK----SGSTIAAGKVTE 600 (603)
T ss_pred hchhheeEEEec----cCceeeeeeEEe
Confidence 999994 999999999985
No 29
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=7e-49 Score=379.80 Aligned_cols=368 Identities=18% Similarity=0.305 Sum_probs=310.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCc-----------CccccceecceEeeecceeeeeecccCCCCCCCccccccCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQT-----------VRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGK 173 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~-----------~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 173 (531)
..+||++|++++|||||++.|+.... .||+||.+.|.|.+++..-+- ++....+.++|.
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILG-FD~~GNvVNKPD--------- 202 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILG-FDVHGNVVNKPD--------- 202 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCcccccccccee-eccccccccCCC---------
Confidence 37999999999999999999984332 378899999999988764322 122222222221
Q ss_pred CCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEE
Q 039945 174 EDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHII 251 (531)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iI 251 (531)
+.....+|- ...+...+.++|||.+||++|.+++..++ ..+|+.+|+|-++.| +...|+||+-++.++.+| ++
T Consensus 203 ~Hg~~LdWv---kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALaL~VP-Vf 277 (641)
T KOG0463|consen 203 PHGHNLDWV---KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALALHVP-VF 277 (641)
T ss_pred CCCCcccce---eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhhhcCc-EE
Confidence 122234443 23334458899999999999999999998 668999999999998 899999999999999875 89
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHHhccc-----------------------CCCCCEEEecccCccchHHHHHHHHccC
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFIQGTV-----------------------ADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l~~~~-----------------------~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+|++|+|++..+.+++...-+..+++..+ ...+|+|.+|..+|+|++-|..+|. .+
T Consensus 278 vVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN-ll 356 (641)
T KOG0463|consen 278 VVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN-LL 356 (641)
T ss_pred EEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh-hc
Confidence 99999999999888888888888887521 2357899999999999999988887 44
Q ss_pred CC-CCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEee
Q 039945 309 PI-PERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLF 387 (531)
Q Consensus 309 ~~-~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~ 387 (531)
+. .....+.|..|.|+|.|.|++ +|+|+.|+..+|+|+.+|.+.++|. ..|.|. ...|+||+
T Consensus 357 s~R~~~~E~~PAeFQIDD~Y~VpG--------VGTvvSGT~L~GtIrLND~LlLGPd-----~~G~F~----pI~iKSIH 419 (641)
T KOG0463|consen 357 SLRRQLNENDPAEFQIDDIYWVPG--------VGTVVSGTLLSGTIRLNDILLLGPD-----SNGDFM----PIPIKSIH 419 (641)
T ss_pred CcccccccCCCcceeecceEecCC--------cceEeecceeeeeEEeccEEEecCC-----CCCCee----eeehhhhh
Confidence 43 344567889999999999976 8999999999999999999999995 678884 56799999
Q ss_pred ecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCC
Q 039945 388 AEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQE 467 (531)
Q Consensus 388 ~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~ 467 (531)
+.+-++..+.+||...++|+ .+.+.++++|||+.+++-.|.++|.|+|++.+|+|| +.|.++|
T Consensus 420 RKRMpV~~VrcGQtASFALK---KIkr~~vRKGMVmVsp~lkPqAsweFEaEILVLHHP--------------TTIsprY 482 (641)
T KOG0463|consen 420 RKRMPVGIVRCGQTASFALK---KIKRKDVRKGMVMVSPKLKPQASWEFEAEILVLHHP--------------TTISPRY 482 (641)
T ss_pred hccccceEEeccchhhhHhh---hcchhhhhcceEEecCCCCcceeeEEeeeEEEEecC--------------CccCcch
Confidence 99999999999999999998 899999999999999999999999999999999984 6899999
Q ss_pred EEEEEeeceeeeEEEEEecCc--------eEEEE-eCCeeecccCCEEEEEeccCCCceEEEEEEEeec
Q 039945 468 ILMLNIGSMSTGARVLAVKND--------LAKLQ-LTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQAG 527 (531)
Q Consensus 468 ~~~l~~g~~~~~~~v~~i~~~--------~v~~~-l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~~ 527 (531)
+.++|||+++++|++.++..+ .|+|+ +..|+|+++|+|++|| +|||.++|.|++=
T Consensus 483 QAMvHcGSiRQTAtivsM~kdcLRTGDka~V~FrFIkqPEYir~gqrlVFR-----EGRTKAVGti~~~ 546 (641)
T KOG0463|consen 483 QAMVHCGSIRQTATIVSMGKDCLRTGDKAKVQFRFIKQPEYIRPGQRLVFR-----EGRTKAVGTISSV 546 (641)
T ss_pred hheeeeccccceeeeeecChhhhhcCCcceEEEEEecCcceecCCceEEee-----cccceeeeeeccc
Confidence 999999999999999999765 88999 4789999999999999 8999999999864
No 30
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.8e-45 Score=355.21 Aligned_cols=342 Identities=22% Similarity=0.301 Sum_probs=283.2
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHC---CCc-------------------------CccccceecceEeeecceeeeee
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISG---VQT-------------------------VRFKNELERNITIKLGYANAKIY 153 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g---~~~-------------------------~~~~~e~~~git~~~~~~~~~~~ 153 (531)
.+.++|++++||+++||||+-+.|+. ... +...+|+++|.|+.++.+
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA----- 150 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRA----- 150 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeE-----
Confidence 37789999999999999999988762 211 122355555666655543
Q ss_pred cccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC---
Q 039945 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC--- 230 (531)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~--- 230 (531)
.+++.+++++++|+|||..|+.+|+.++.+||+.+||+.|..+.
T Consensus 151 ---------------------------------~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefet 197 (501)
T KOG0459|consen 151 ---------------------------------YFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFET 197 (501)
T ss_pred ---------------------------------EEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhc
Confidence 44455589999999999999999999999999999999997542
Q ss_pred ---CCcchHHHHHHHHHcCCceEEEEEeccCCccH----HHHHHHHHHHHHHHhc--cc-CCCCCEEEecccCccchHHH
Q 039945 231 ---PQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE----NVAINQHEAIMKFIQG--TV-ADGAPVVPISAQLKYNIDVV 300 (531)
Q Consensus 231 ---~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~----~~~~~~~~~i~~~l~~--~~-~~~~~ii~iSa~~g~gi~~L 300 (531)
...||++|..+++..+++++|+++||||-+.. ++.++..+++..+|.. ++ .....++|+|+.+|.++.+.
T Consensus 198 gFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~ 277 (501)
T KOG0459|consen 198 GFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDR 277 (501)
T ss_pred ccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhc
Confidence 34599999999999999999999999997643 4555666666666662 22 24567999999999999765
Q ss_pred H-------------HHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCcee
Q 039945 301 C-------------EYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVV 367 (531)
Q Consensus 301 ~-------------~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~ 367 (531)
. +.|.. +|...+..++|++|+|.+-|+ ..|+|+.|+|.+|.++.||.++++|.+
T Consensus 278 ~~s~cpwy~gp~fl~~ld~-l~~~~R~~~GP~~~pI~~Kyk----------dmGTvv~GKvEsGsi~kg~~lvvMPnk-- 344 (501)
T KOG0459|consen 278 TDSVCPWYKGPIFLEYLDE-LPHLERILNGPIRCPVANKYK----------DMGTVVGGKVESGSIKKGQQLVVMPNK-- 344 (501)
T ss_pred ccccCCcccCCccceehhc-cCcccccCCCCEEeehhhhcc----------ccceEEEEEecccceecCCeEEEccCC--
Confidence 4 44553 676788999999999988774 279999999999999999999999975
Q ss_pred cCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeec
Q 039945 368 KDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLL 447 (531)
Q Consensus 368 ~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~ 447 (531)
..+.|.+|...+..++.+.||+.+-+.|+ ++..+++..|.|||+++.+....+.|.|++.+|.|.
T Consensus 345 -----------~~veV~~I~~ddvE~~~~~pGenvk~rlk---gieeedi~~GfiL~~~~n~~~s~~~F~aqi~IlE~~- 409 (501)
T KOG0459|consen 345 -----------TNVEVLGIYSDDVETDRVAPGENVKLRLK---GIEEEDISPGFILCSPNNPCKSGRTFDAQIVILEHK- 409 (501)
T ss_pred -----------cceEEEEEecccceeeeccCCcceEEEec---ccchhhccCceEEecCCCccccccEEEEEEEEEecC-
Confidence 46889999999889999999999999999 999999999999999999999999999999999873
Q ss_pred ccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEec---C---------------c---eEEEEeCCeeecccCC--
Q 039945 448 GVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVK---N---------------D---LAKLQLTSPVCTSRGE-- 504 (531)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~---~---------------~---~v~~~l~~p~~~~~g~-- 504 (531)
.=|..||..++|+++.-..+.|..+- . + +++|+...|+|++.+.
T Consensus 410 -------------sIi~~GY~~VlHIht~ieEv~i~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~~iCle~fkd~ 476 (501)
T KOG0459|consen 410 -------------SIICAGYSCVLHIHTAVEEVEIKLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEGPICLETFKDY 476 (501)
T ss_pred -------------ceeccCcceEeeeeeehhheeeeeeeeecccccccccCCCeeecCCcEEEEEEecCCcEehhhcccc
Confidence 45888999999999998888775542 1 0 6778888999999984
Q ss_pred ----EEEEEeccCCCceEEEEEEEee
Q 039945 505 ----KIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 505 ----r~ilr~~~~~~~~tig~G~I~~ 526 (531)
||.||| +|+|||+|+|.+
T Consensus 477 pqmgRFtLRd----egkTIAiGkV~k 498 (501)
T KOG0459|consen 477 PQMGRFTLRD----EGKTIAIGKVLK 498 (501)
T ss_pred hhhcceEEec----CCcEEEEEEEEe
Confidence 999997 999999999986
No 31
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-42 Score=336.16 Aligned_cols=363 Identities=18% Similarity=0.254 Sum_probs=299.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCc-----------CccccceecceEeeecceeeeeecccCCCCCCCccccccCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQT-----------VRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGK 173 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~-----------~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 173 (531)
.+++|++|..++|||||++.|+.... -||.||...|.|..+++.. ..+++. .+--+|.+- .
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~ev---lGFd~~--g~vVNY~~~---~ 238 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEV---LGFDNR--GKVVNYAQN---M 238 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhc---cccccc--ccccchhhc---c
Confidence 47999999999999999999984332 2678999999999887642 222210 001111110 0
Q ss_pred CCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEE
Q 039945 174 EDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHII 251 (531)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iI 251 (531)
..+ ...+...+.++|||.+||.+|.+.++.++ ..+|+++|||+|+.| +..-|+||+-++.++++| ++
T Consensus 239 taE---------Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G-i~~tTrEHLgl~~AL~iP-fF 307 (591)
T KOG1143|consen 239 TAE---------EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRG-ITWTTREHLGLIAALNIP-FF 307 (591)
T ss_pred cHH---------HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCC-CccccHHHHHHHHHhCCC-eE
Confidence 001 22334458999999999999999999998 458999999999998 789999999999999976 89
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHHhccc-----------------------CCCCCEEEecccCccchHHHHHHHHccC
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFIQGTV-----------------------ADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l~~~~-----------------------~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
++++|||++++..++...+++..+++..+ .+.+|++.+|+.+|+|++-|..+|. .+
T Consensus 308 vlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn-~L 386 (591)
T KOG1143|consen 308 VLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN-CL 386 (591)
T ss_pred EEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh-hc
Confidence 99999999998778888888887776432 3457999999999999999988887 56
Q ss_pred CCCC------CCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceee
Q 039945 309 PIPE------RNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSR 382 (531)
Q Consensus 309 ~~~~------~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~ 382 (531)
++.- .-...+..|.|++.|.|+. +|.|+.|.+.+|.++.|+.+.++|. ++|.| .+.+
T Consensus 387 sp~~~~~e~~~L~q~~~eFqvdEiy~Vp~--------VG~VVGG~Ls~G~l~Eg~~~~vGP~-----~DG~F----~~it 449 (591)
T KOG1143|consen 387 SPAGTAEERIQLVQLPAEFQVDEIYNVPH--------VGQVVGGMLSEGQLHEGADVLVGPM-----KDGTF----EKIT 449 (591)
T ss_pred CCcCChHHHHHHhcCcceeeHhHeecCCc--------ccccccceeeeceeccCceeEeecC-----CCCce----eEEE
Confidence 5421 1234577999999999875 8999999999999999999999997 67888 5789
Q ss_pred eEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccc
Q 039945 383 IVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSK 462 (531)
Q Consensus 383 V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~ 462 (531)
|-+|++++.++..+.|||...+.+. ..+...+++||||..++..|+....|+|++.+|-|. +.
T Consensus 450 V~sI~Rnr~acrvvraGqaAslsl~---d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~lLfHa--------------T~ 512 (591)
T KOG1143|consen 450 VGSIRRNRQACRVVRAGQAASLSLN---DPDGVSLRRGMVLAEIDHNPPVCYEFTANLLLLFHA--------------TY 512 (591)
T ss_pred eeeeeccccceeeecCccceeeecc---CCCccchhcceEEeecCCCCceEEEEeeeehhhhhh--------------Hh
Confidence 9999999999999999999999987 444456889999999998899999999999999772 57
Q ss_pred cCCCCEEEEEeeceeeeEEEEEecCc---------eEEEE-eCCeeecccCCEEEEEeccCCCceEEEEEEEee
Q 039945 463 LAKQEILMLNIGSMSTGARVLAVKND---------LAKLQ-LTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 463 l~~~~~~~l~~g~~~~~~~v~~i~~~---------~v~~~-l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
|..|.+.++|+|+.+++|.|..|.+. .|.|. +.+|.|+++|.+++|| +|.+.|.|.|++
T Consensus 513 i~~GFQ~TVhiGsvrqTAvi~~I~~~d~lrtg~~AvV~f~F~~hPEyir~G~~ilfR-----eG~tKGiG~Vt~ 581 (591)
T KOG1143|consen 513 ICEGFQATVHIGSVRQTAVITHIDDADCLRTGKWAVVKFCFAYHPEYIREGSPILFR-----EGKTKGIGEVTK 581 (591)
T ss_pred heecceEEEEEcceeeeeeeeeecccccccCCceEEEEEEecCCchhccCCCeeeee-----cccccccceEEE
Confidence 89999999999999999999999764 78888 4789999999999999 899999999986
No 32
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-37 Score=294.13 Aligned_cols=314 Identities=26% Similarity=0.381 Sum_probs=250.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC--CC--cCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG--VQ--TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLC 179 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g--~~--~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (531)
..+|++++||+|+|||||.++|.. .. -|.+....+||||.+++++.+.+..- .+
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~p---------------------ar- 63 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSP---------------------AR- 63 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccc---------------------cc-
Confidence 348999999999999999999963 22 34667888999999999976543110 01
Q ss_pred CCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCC
Q 039945 180 DVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDL 259 (531)
Q Consensus 180 ~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl 259 (531)
++ +.+.-+++|+|+|||...++..+.++...|+.++|||+..| .+.|+.|++.+.+.+. ++.|||+||+|.
T Consensus 64 -Lp------q~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG-~QtQtAEcLiig~~~c-~klvvvinkid~ 134 (522)
T KOG0461|consen 64 -LP------QGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKG-KQTQTAECLIIGELLC-KKLVVVINKIDV 134 (522)
T ss_pred -cC------ccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcc-cccccchhhhhhhhhc-cceEEEEecccc
Confidence 11 11126899999999999999999999999999999999998 8999999998888776 558999999998
Q ss_pred ccHH----HHHHHHHHHHHHHhcccC-CCCCEEEecccCc----cchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeec
Q 039945 260 IQEN----VAINQHEAIMKFIQGTVA-DGAPVVPISAQLK----YNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVN 330 (531)
Q Consensus 260 ~~~~----~~~~~~~~i~~~l~~~~~-~~~~ii~iSa~~g----~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~ 330 (531)
..+. .+++....+++-|+.... .+.|++++||+.| ++|.+|.++|...+-.|+++.++||.|.|+++|.++
T Consensus 135 lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IK 214 (522)
T KOG0461|consen 135 LPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIK 214 (522)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEec
Confidence 7553 344555556666665443 4589999999999 899999999999999999999999999999999998
Q ss_pred CCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCc
Q 039945 331 KPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDP 410 (531)
Q Consensus 331 ~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~ 410 (531)
| .|+|.+|+|.+|.++.|+.+.+..-+ ...+|++|++++.++-+|.+|+++++.++
T Consensus 215 G--------QGTV~TGTvl~G~~~ln~~iE~PAL~-------------e~rkVKslqmf~~~vtsa~~GdR~g~cVt--- 270 (522)
T KOG0461|consen 215 G--------QGTVLTGTVLRGVLRLNTEIEFPALN-------------EKRKVKSLQMFKQRVTSAAAGDRAGFCVT--- 270 (522)
T ss_pred c--------CceEEeeeEEEeEEecCcEEeecccc-------------hhhhhhhHHHHhhhhhhhhcccceeeeee---
Confidence 7 89999999999999999999975543 35689999999999999999999999887
Q ss_pred cccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecC
Q 039945 411 TLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKN 487 (531)
Q Consensus 411 ~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~ 487 (531)
.++.+-+.|| +.+.|+.+.. ..|-+..+.. +. | ..++|..-..+++.+|.-++.|++..+++
T Consensus 271 qFd~klleRg-i~~~pg~Lk~----~~avl~~vep---I~---y----fr~~i~sk~K~Hi~VgheTVMa~~~ff~d 332 (522)
T KOG0461|consen 271 QFDEKLLERG-ICGPPGTLKS----TKAVLATVEP---IQ---Y----FRKSINSKSKIHIAVGHETVMAECQFFKD 332 (522)
T ss_pred ccCHHHHhcc-ccCCCcccce----eeeeeEeecc---hH---H----HhhhhhhcceEEEEehhhhhhhheEEeec
Confidence 7777777777 5566666543 2332223321 11 1 12567777788999999999999998873
No 33
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=5.6e-35 Score=316.05 Aligned_cols=257 Identities=28% Similarity=0.371 Sum_probs=208.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC---CC----------cCccccceecceEeeecceeeeeecccCCCCCCCccccccCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG---VQ----------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSG 172 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g---~~----------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 172 (531)
+||+|+||+|||||||+++|+. .. .|..+.|++||+|+......+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v---------------------- 59 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI---------------------- 59 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE----------------------
Confidence 6899999999999999999973 21 234568999999998765322
Q ss_pred CCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEE
Q 039945 173 KEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIII 252 (531)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIv 252 (531)
.|.+ ..++|||||||.+|...+.++++.+|++|||||+.++ ..+|++.++..+...++| +|+
T Consensus 60 -------~~~~---------~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~~ip-~IV 121 (594)
T TIGR01394 60 -------RYNG---------TKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALELGLK-PIV 121 (594)
T ss_pred -------EECC---------EEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHCCCC-EEE
Confidence 2222 7899999999999999999999999999999999998 899999999999999976 689
Q ss_pred EEeccCCccHHHHHHHHHHHHHHHhcccC----CCCCEEEecccCcc----------chHHHHHHHHccCCCCCCCCCCC
Q 039945 253 LQNKVDLIQENVAINQHEAIMKFIQGTVA----DGAPVVPISAQLKY----------NIDVVCEYIVKKIPIPERNFIDP 318 (531)
Q Consensus 253 viNK~Dl~~~~~~~~~~~~i~~~l~~~~~----~~~~ii~iSa~~g~----------gi~~L~~~L~~~l~~~~~~~~~~ 318 (531)
|+||+|+.+. ...+..+++.+++..... ..+|++++||++|. |++.|++.|.+.+|.|..+.+.|
T Consensus 122 viNKiD~~~a-~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~p 200 (594)
T TIGR01394 122 VINKIDRPSA-RPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEP 200 (594)
T ss_pred EEECCCCCCc-CHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCC
Confidence 9999999753 233445566665543211 24689999999996 79999999999999998888999
Q ss_pred CEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeec----cccee
Q 039945 319 PNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAE----QNELQ 394 (531)
Q Consensus 319 ~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~----~~~v~ 394 (531)
|+++|++++. +++.|++++|+|.+|+|++||.|.+.|.+ |.+ ...+|++|+.. +.+++
T Consensus 201 l~~~V~~i~~--------d~~~Grv~~gRV~sG~lk~G~~V~~~~~~------~~~----~~~kV~~i~~~~g~~~~~v~ 262 (594)
T TIGR01394 201 LQMLVTNLDY--------DEYLGRIAIGRVHRGTVKKGQQVALMKRD------GTI----ENGRISKLLGFEGLERVEID 262 (594)
T ss_pred EEEEEEEEEe--------eCCCceEEEEEEEeCEEccCCEEEEecCC------Cce----eEEEEEEEEEccCCCceECC
Confidence 9999998874 44589999999999999999999999852 211 24789999875 46899
Q ss_pred EEecCceEEEeeecCccccccccccceeeccCCC
Q 039945 395 FAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGS 428 (531)
Q Consensus 395 ~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~ 428 (531)
+|.|||+|++. ++ +++.+|++||+++.
T Consensus 263 ~a~aGDiv~i~-----gl--~~i~~Gdtl~~~~~ 289 (594)
T TIGR01394 263 EAGAGDIVAVA-----GL--EDINIGETIADPEV 289 (594)
T ss_pred EECCCCEEEEe-----CC--cccCCCCEEeCCCc
Confidence 99999999884 33 46788999987663
No 34
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-36 Score=302.22 Aligned_cols=215 Identities=27% Similarity=0.337 Sum_probs=183.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH---CC---------CcCccccceecceEeeecceeeeeecccCCCCCCCccccccC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS---GV---------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYG 170 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~---g~---------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 170 (531)
.+.+|++||.|+|||||||..+|+ |. ..|+.+.|+|||||+....+++.. ++
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify--------------~~-- 121 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFY--------------KD-- 121 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEE--------------Ec--
Confidence 456899999999999999999997 31 134567899999999987765422 11
Q ss_pred CCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceE
Q 039945 171 SGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHI 250 (531)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~i 250 (531)
...+.++|||||||.||..+..+.+..||++||||||++| +++||...+.++...+.. +
T Consensus 122 -------------------~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qG-vqAQT~anf~lAfe~~L~-i 180 (650)
T KOG0462|consen 122 -------------------GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQG-VQAQTVANFYLAFEAGLA-I 180 (650)
T ss_pred -------------------CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcC-chHHHHHHHHHHHHcCCe-E
Confidence 0016899999999999999999999999999999999999 899999999888888976 7
Q ss_pred EEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeec
Q 039945 251 IILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVN 330 (531)
Q Consensus 251 IvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~ 330 (531)
|.|+||+|++.+ +.+....++.+.+. ....+++.+||++|.|+++|+++|.+++|+|....++||+|.++++|
T Consensus 181 IpVlNKIDlp~a-dpe~V~~q~~~lF~---~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~Lifds~--- 253 (650)
T KOG0462|consen 181 IPVLNKIDLPSA-DPERVENQLFELFD---IPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRMLIFDSE--- 253 (650)
T ss_pred EEeeeccCCCCC-CHHHHHHHHHHHhc---CCccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHHHhhhhh---
Confidence 999999999864 23445555555543 35668999999999999999999999999999999999999999887
Q ss_pred CCCCcccCCCceEEEEEEEeeeeccCCEEEEecCce
Q 039945 331 KPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIV 366 (531)
Q Consensus 331 ~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~ 366 (531)
+|.|+|.++.++|..|.+++||+|..+-+..
T Consensus 254 -----yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~ 284 (650)
T KOG0462|consen 254 -----YDEYRGVIALVRVVDGVVRKGDKVQSAATGK 284 (650)
T ss_pred -----hhhhcceEEEEEEeeeeeecCCEEEEeecCc
Confidence 7889999999999999999999999887643
No 35
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.6e-35 Score=294.20 Aligned_cols=219 Identities=27% Similarity=0.297 Sum_probs=185.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH---CC---------CcCccccceecceEeeecceeeeeecccCCCCCCCccccccC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS---GV---------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYG 170 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~---g~---------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 170 (531)
++.+|..|+.|.+||||||..+|+ |. ..+.++.|+|||||++.....+.....+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~-------------- 72 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKD-------------- 72 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCC--------------
Confidence 556899999999999999999997 22 2456789999999999876544321111
Q ss_pred CCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceE
Q 039945 171 SGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHI 250 (531)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~i 250 (531)
+ ..+.++|||||||-||..+..+++..|.++||||||++| ++.||.....++-..+.. +
T Consensus 73 ---------------g----~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQG-veAQTlAN~YlAle~~Le-I 131 (603)
T COG0481 73 ---------------G----ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVYLALENNLE-I 131 (603)
T ss_pred ---------------C----CEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccc-hHHHHHHHHHHHHHcCcE-E
Confidence 1 127899999999999999999999999999999999999 899999888877777765 8
Q ss_pred EEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeec
Q 039945 251 IILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVN 330 (531)
Q Consensus 251 IvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~ 330 (531)
|-|+||+||+.. +.+...+++.+.+- .+....+.+||++|.||++++++|.+.+|+|+.+.+.|++..|+|+|
T Consensus 132 iPViNKIDLP~A-dpervk~eIe~~iG---id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~--- 204 (603)
T COG0481 132 IPVLNKIDLPAA-DPERVKQEIEDIIG---IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKALIFDSW--- 204 (603)
T ss_pred EEeeecccCCCC-CHHHHHHHHHHHhC---CCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEEEEecc---
Confidence 999999999864 23456667766652 45567899999999999999999999999999999999999999998
Q ss_pred CCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceec
Q 039945 331 KPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVK 368 (531)
Q Consensus 331 ~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~ 368 (531)
+|.|+|.|+..||..|++++||++.++.++..+
T Consensus 205 -----yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y 237 (603)
T COG0481 205 -----YDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEY 237 (603)
T ss_pred -----ccccceEEEEEEEeeceecCCCEEEEEecCCEE
Confidence 788999999999999999999999999886544
No 36
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.3e-33 Score=306.20 Aligned_cols=261 Identities=25% Similarity=0.265 Sum_probs=201.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC------------CcCccccceecceEeeecceeeeeecccCCCCCCCccccccCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGS 171 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 171 (531)
..+||+++||+|||||||+++|+.. ..+..+.|+++|+|+......+.....
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~---------------- 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAK---------------- 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcC----------------
Confidence 3589999999999999999999742 123446788999998865432211000
Q ss_pred CCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEE
Q 039945 172 GKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHII 251 (531)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iI 251 (531)
+| ....++|||||||.+|...+.+++..||++|+|+|++++ .+.++.+++..+...++ |+|
T Consensus 66 ----------~g-------~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g-~~~qt~~~~~~~~~~~i-piI 126 (595)
T TIGR01393 66 ----------DG-------ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQG-IEAQTLANVYLALENDL-EII 126 (595)
T ss_pred ----------CC-------CEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCC-CCHhHHHHHHHHHHcCC-CEE
Confidence 00 126799999999999999999999999999999999998 78889888877666675 589
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecC
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNK 331 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~ 331 (531)
+|+||+|+.+.. .....+++.+.+. ....+++++||++|.|+++|+++|.+.+|.|..+.+.|++++|++++.
T Consensus 127 iViNKiDl~~~~-~~~~~~el~~~lg---~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~--- 199 (595)
T TIGR01393 127 PVINKIDLPSAD-PERVKKEIEEVIG---LDASEAILASAKTGIGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHY--- 199 (595)
T ss_pred EEEECcCCCccC-HHHHHHHHHHHhC---CCcceEEEeeccCCCCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEE---
Confidence 999999997532 2233345544432 222368999999999999999999999999988889999999999884
Q ss_pred CCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecc---cceeEEecCceEEEeeec
Q 039945 332 PGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQ---NELQFAVPGGLIGVGTTM 408 (531)
Q Consensus 332 ~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~---~~v~~a~aG~~v~i~l~~ 408 (531)
++++|++++|+|.+|+|++||.|.++|++ ...+|.+|...+ .++++|.||| |++.+.
T Consensus 200 -----d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~-------------~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~- 259 (595)
T TIGR01393 200 -----DNYRGVVALVRVFEGTIKPGDKIRFMSTG-------------KEYEVDEVGVFTPKLTKTDELSAGE-VGYIIA- 259 (595)
T ss_pred -----eCCCcEEEEEEEECCEEecCCEEEEecCC-------------CeeEEeEEEEecCCceECCEEcCCC-EEEEec-
Confidence 45699999999999999999999999874 235677776654 5789999999 444333
Q ss_pred Cccc-cccccccceeeccCCC
Q 039945 409 DPTL-TRADRLVGQVLGEVGS 428 (531)
Q Consensus 409 ~~~~-~~~~i~~G~vl~~~~~ 428 (531)
++ ...++.+|++|+..+.
T Consensus 260 --~~~~~~~~~~Gdtl~~~~~ 278 (595)
T TIGR01393 260 --GIKDVSDVRVGDTITHVKN 278 (595)
T ss_pred --cccccCccCCCCEEECCCC
Confidence 34 2357888999976653
No 37
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=5.1e-33 Score=301.93 Aligned_cols=262 Identities=24% Similarity=0.264 Sum_probs=202.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHC---C---------CcCccccceecceEeeecceeeeeecccCCCCCCCccccccC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISG---V---------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYG 170 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g---~---------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 170 (531)
...+||+|+||+|||||||+++|+. . ..+.++.|++||+|+......+.. ..
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~-~~--------------- 68 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNY-KA--------------- 68 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEE-Ec---------------
Confidence 4458999999999999999999973 2 124457899999999765432211 00
Q ss_pred CCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceE
Q 039945 171 SGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHI 250 (531)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~i 250 (531)
.+| ....++|||||||.+|...+.+++..+|++|+|+|++.+ .+.++.+++..+...+++ +
T Consensus 69 ----------~dg-------~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g-v~~qt~~~~~~~~~~~lp-i 129 (600)
T PRK05433 69 ----------KDG-------ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVYLALENDLE-I 129 (600)
T ss_pred ----------cCC-------CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHHCCCC-E
Confidence 000 126899999999999999999999999999999999998 788998888877777765 8
Q ss_pred EEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeec
Q 039945 251 IILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVN 330 (531)
Q Consensus 251 IvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~ 330 (531)
|+|+||+|+.+.. .....+++.+.+. .....++++||++|.|+++|+++|.+.+|.|..+.+.|++++|++++
T Consensus 130 IvViNKiDl~~a~-~~~v~~ei~~~lg---~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~--- 202 (600)
T PRK05433 130 IPVLNKIDLPAAD-PERVKQEIEDVIG---IDASDAVLVSAKTGIGIEEVLEAIVERIPPPKGDPDAPLKALIFDSW--- 202 (600)
T ss_pred EEEEECCCCCccc-HHHHHHHHHHHhC---CCcceEEEEecCCCCCHHHHHHHHHHhCccccCCCCCCceEEEEEEE---
Confidence 9999999997532 2233445554432 22245899999999999999999999999998888999999998887
Q ss_pred CCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeec---ccceeEEecCceEEEeee
Q 039945 331 KPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAE---QNELQFAVPGGLIGVGTT 407 (531)
Q Consensus 331 ~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~---~~~v~~a~aG~~v~i~l~ 407 (531)
+++++|++++|+|.+|+|++||.|.++|++. ..+|.+|... ..++++|.|||++.+. .
T Consensus 203 -----~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~-------------~~~V~~i~~~~~~~~~v~~~~aGdIg~i~-~ 263 (600)
T PRK05433 203 -----YDNYRGVVVLVRVVDGTLKKGDKIKMMSTGK-------------EYEVDEVGVFTPKMVPVDELSAGEVGYII-A 263 (600)
T ss_pred -----ecCCCceEEEEEEEcCEEecCCEEEEecCCc-------------eEEEEEeeccCCCceECcEEcCCCEEEEe-c
Confidence 3556999999999999999999999999742 3466676653 4678999999955443 2
Q ss_pred cCccc-cccccccceeeccCCC
Q 039945 408 MDPTL-TRADRLVGQVLGEVGS 428 (531)
Q Consensus 408 ~~~~~-~~~~i~~G~vl~~~~~ 428 (531)
++ ...++..|++|+..+.
T Consensus 264 ---~ik~~~~~~~Gdtl~~~~~ 282 (600)
T PRK05433 264 ---GIKDVRDARVGDTITLAKN 282 (600)
T ss_pred ---ccccccccCCCCEEECCCC
Confidence 33 2356888999976553
No 38
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-33 Score=280.33 Aligned_cols=258 Identities=27% Similarity=0.369 Sum_probs=207.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC---C----------cCccccceecceEeeecceeeeeecccCCCCCCCccccccC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV---Q----------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYG 170 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~---~----------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 170 (531)
+.+|||||.|++||||||++.|+.. . .+....|+||||||-...
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKn----------------------- 60 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKN----------------------- 60 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEecc-----------------------
Confidence 4589999999999999999999832 1 123468999999995532
Q ss_pred CCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceE
Q 039945 171 SGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHI 250 (531)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~i 250 (531)
+.+.|.| .+|+++|||||.||..+..+.++..|.+||+|||.+| .++||+-.+.-+-.+|.+|
T Consensus 61 ------Tav~~~~---------~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~gL~P- 123 (603)
T COG1217 61 ------TAVNYNG---------TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALALGLKP- 123 (603)
T ss_pred ------ceeecCC---------eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHcCCCc-
Confidence 3345554 7999999999999999999999999999999999999 8999999998888899987
Q ss_pred EEEEeccCCccHHHHHHHHHHHHHHHhccc----CCCCCEEEecccCcc----------chHHHHHHHHccCCCCCCCCC
Q 039945 251 IILQNKVDLIQENVAINQHEAIMKFIQGTV----ADGAPVVPISAQLKY----------NIDVVCEYIVKKIPIPERNFI 316 (531)
Q Consensus 251 IvviNK~Dl~~~~~~~~~~~~i~~~l~~~~----~~~~~ii~iSa~~g~----------gi~~L~~~L~~~l~~~~~~~~ 316 (531)
|||+||+|.++. +.++..++..+++-+.. .-++|++..||+.|. ++.-|++.|.+++|.|..+.+
T Consensus 124 IVVvNKiDrp~A-rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d 202 (603)
T COG1217 124 IVVINKIDRPDA-RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLD 202 (603)
T ss_pred EEEEeCCCCCCC-CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCC
Confidence 789999999864 23345555555443322 236799999999985 578999999999999999999
Q ss_pred CCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecc----cc
Q 039945 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQ----NE 392 (531)
Q Consensus 317 ~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~----~~ 392 (531)
+||+|.|.. -++++|.|.+..|||.+|++++|+.|.+.-. +|.. ...+|..+..+. .+
T Consensus 203 ~PlQ~qvt~--------Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~------~g~~----~~gri~kllgf~GL~R~e 264 (603)
T COG1217 203 EPLQMQVTQ--------LDYNSYVGRIGIGRIFRGTVKPNQQVALIKS------DGTT----ENGRITKLLGFLGLERIE 264 (603)
T ss_pred CCeEEEEEe--------eccccccceeEEEEEecCcccCCCeEEEEcC------CCcE----EeeEEEeeeeccceeeee
Confidence 999999953 2367889999999999999999999998753 2332 467888887754 47
Q ss_pred eeEEecCceEEEeeecCccccccccccceeeccCC
Q 039945 393 LQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVG 427 (531)
Q Consensus 393 v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~ 427 (531)
+++|.|||+|+++ ++ .++..|+-+|+++
T Consensus 265 i~eA~AGDIVaia-----G~--~~~~igdTi~d~~ 292 (603)
T COG1217 265 IEEAEAGDIVAIA-----GL--EDINIGDTICDPD 292 (603)
T ss_pred cccccccCEEEEc-----Cc--ccccccccccCCC
Confidence 8999999999984 33 3556677777765
No 39
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1e-32 Score=297.95 Aligned_cols=258 Identities=22% Similarity=0.267 Sum_probs=203.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC---C----------cCccccceecceEeeecceeeeeecccCCCCCCCccccccC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV---Q----------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYG 170 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~---~----------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 170 (531)
+.+||+++||+|||||||+++|+.. . .|..+.|+++|+|+......+
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i-------------------- 63 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI-------------------- 63 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE--------------------
Confidence 4589999999999999999999842 1 123457888999987754322
Q ss_pred CCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceE
Q 039945 171 SGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHI 250 (531)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~i 250 (531)
+|.+ ..++|||||||.+|...+...++.+|++|+|+|+.++ ...|++.++..+...+++ .
T Consensus 64 ---------~~~~---------~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G-~~~qt~~~l~~a~~~gip-~ 123 (607)
T PRK10218 64 ---------KWND---------YRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDG-PMPQTRFVTKKAFAYGLK-P 123 (607)
T ss_pred ---------ecCC---------EEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccC-ccHHHHHHHHHHHHcCCC-E
Confidence 1222 7899999999999999999999999999999999998 799999999988888976 5
Q ss_pred EEEEeccCCccHHHHHHHHHHHHHHHhccc----CCCCCEEEecccCcc----------chHHHHHHHHccCCCCCCCCC
Q 039945 251 IILQNKVDLIQENVAINQHEAIMKFIQGTV----ADGAPVVPISAQLKY----------NIDVVCEYIVKKIPIPERNFI 316 (531)
Q Consensus 251 IvviNK~Dl~~~~~~~~~~~~i~~~l~~~~----~~~~~ii~iSa~~g~----------gi~~L~~~L~~~l~~~~~~~~ 316 (531)
|+++||+|+.+. ......+++.+++.... ...+|++++||++|+ |+..|+++|.+++|.|..+.+
T Consensus 124 IVviNKiD~~~a-~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~ 202 (607)
T PRK10218 124 IVVINKVDRPGA-RPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLD 202 (607)
T ss_pred EEEEECcCCCCC-chhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCC
Confidence 889999998753 33445566666553211 135789999999998 689999999999999988888
Q ss_pred CCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeec----ccc
Q 039945 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAE----QNE 392 (531)
Q Consensus 317 ~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~----~~~ 392 (531)
.||+++|++++ +++++|++++|||.+|+|++||.|.+.+.. +++ ...+|.+|+.. +.+
T Consensus 203 ~Pl~~~V~k~~--------~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~------~~~----~~~rv~~l~~~~g~~~~~ 264 (607)
T PRK10218 203 GPFQMQISQLD--------YNSYVGVIGIGRIKRGKVKPNQQVTIIDSE------GKT----RNAKVGKVLGHLGLERIE 264 (607)
T ss_pred CCeEEEEEeeE--------ecCCCcEEEEEEEEeCcCcCCCEEEEecCC------CcE----eeEEEEEEEEEecCCceE
Confidence 99999998876 355699999999999999999999987641 121 24567777654 468
Q ss_pred eeEEecCceEEEeeecCccccccccccceeeccCC
Q 039945 393 LQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVG 427 (531)
Q Consensus 393 v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~ 427 (531)
+++|.|||+|++. ++ +++..|+.||.++
T Consensus 265 v~~a~AGdIvai~-----gl--~~~~~GdTl~~~~ 292 (607)
T PRK10218 265 TDLAEAGDIVAIT-----GL--GELNISDTVCDTQ 292 (607)
T ss_pred CCEEcCCCEEEEE-----Cc--cccccCcEEecCC
Confidence 9999999999973 21 3455677776544
No 40
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.97 E-value=5.1e-30 Score=276.77 Aligned_cols=235 Identities=23% Similarity=0.343 Sum_probs=182.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
...+|+++||+|||||||+++|.+... .....+|+|++++...+. +.+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v---~~~e~~GIT~~ig~~~v~-----------------------------~~~ 133 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKV---AQGEAGGITQHIGAYHVE-----------------------------NED 133 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc---ccccCCceeecceEEEEE-----------------------------ECC
Confidence 346899999999999999999987532 233356788877653221 111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHH
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~ 263 (531)
...++|||||||++|...+.+++..+|++++|+|++++ ..+|+.+++..+...++| +|+++||+|+.+..
T Consensus 134 --------~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg-v~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~ 203 (587)
T TIGR00487 134 --------GKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG-VMPQTIEAISHAKAANVP-IIVAINKIDKPEAN 203 (587)
T ss_pred --------CcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC-CCHhHHHHHHHHHHcCCC-EEEEEECcccccCC
Confidence 13799999999999999999999999999999999988 799999999988888865 99999999996421
Q ss_pred HHHHHHHHHHHH--HhcccCCCCCEEEecccCccchHHHHHHHHcc--CCCCCCCCCCCCEEEEEEeeeecCCCCcccCC
Q 039945 264 VAINQHEAIMKF--IQGTVADGAPVVPISAQLKYNIDVVCEYIVKK--IPIPERNFIDPPNMIVIRSFDVNKPGFEVDDI 339 (531)
Q Consensus 264 ~~~~~~~~i~~~--l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~--l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~ 339 (531)
.++..+.+.+. ....+....+++++||++|+|+++|+++|... +.....+.+.|++++|++++..+ +
T Consensus 204 -~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~--------g 274 (587)
T TIGR00487 204 -PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDK--------G 274 (587)
T ss_pred -HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeC--------C
Confidence 11222222211 11111234689999999999999999998632 23334456789999999998554 3
Q ss_pred CceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeee-cccceeEEecCceEEE
Q 039945 340 RGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFA-EQNELQFAVPGGLIGV 404 (531)
Q Consensus 340 ~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~-~~~~v~~a~aG~~v~i 404 (531)
+|++++|+|.+|+|++||.|+++|. ..+|++|+. ++..+++|.||+.|.+
T Consensus 275 ~G~v~~~~V~~GtL~~Gd~iv~~~~---------------~~kVr~l~~~~g~~v~~a~~g~~v~i 325 (587)
T TIGR00487 275 RGPVATVLVQSGTLRVGDIVVVGAA---------------YGRVRAMIDENGKSVKEAGPSKPVEI 325 (587)
T ss_pred CcEEEEEEEEeCEEeCCCEEEECCC---------------ccEEEEEECCCCCCCCEECCCCEEEE
Confidence 8999999999999999999999884 468999998 5568999999999987
No 41
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.97 E-value=5.8e-30 Score=282.22 Aligned_cols=235 Identities=25% Similarity=0.351 Sum_probs=184.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
....+|+++||+|||||||+++|.+... ..+..+|+|++++...+ .|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v---~~~e~~GIT~~iga~~v-----------------------------~~~ 335 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNV---AAGEAGGITQHIGAYQV-----------------------------ETN 335 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc---cccccCceeeeccEEEE-----------------------------EEC
Confidence 4557899999999999999999986432 23345788887765322 112
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~ 262 (531)
+ ..++|||||||.+|...+.+++..+|++|||||++++ ..+|+.+++..+...++| +|+++||+|+.+.
T Consensus 336 ~---------~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddG-v~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a 404 (787)
T PRK05306 336 G---------GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDG-VMPQTIEAINHAKAAGVP-IIVAINKIDKPGA 404 (787)
T ss_pred C---------EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCC-CCHhHHHHHHHHHhcCCc-EEEEEECcccccc
Confidence 1 6899999999999999999999999999999999998 799999999999888865 9999999999753
Q ss_pred HHHHHHHHHHHH--HHhcccCCCCCEEEecccCccchHHHHHHHHccC--CCCCCCCCCCCEEEEEEeeeecCCCCcccC
Q 039945 263 NVAINQHEAIMK--FIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI--PIPERNFIDPPNMIVIRSFDVNKPGFEVDD 338 (531)
Q Consensus 263 ~~~~~~~~~i~~--~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l--~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~ 338 (531)
+ ......++.+ ++...+...++++++||++|+|+++|+++|.... .....+.+.++.++|++++. ++
T Consensus 405 ~-~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~--------dk 475 (787)
T PRK05306 405 N-PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQAEVLELKANPDRPARGTVIEAKL--------DK 475 (787)
T ss_pred C-HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEE--------cC
Confidence 2 1222222222 1111112457999999999999999999987321 12344567889999998874 34
Q ss_pred CCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeec-ccceeEEecCceEEE
Q 039945 339 IRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAE-QNELQFAVPGGLIGV 404 (531)
Q Consensus 339 ~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~-~~~v~~a~aG~~v~i 404 (531)
++|.+++|+|.+|+|++||.|+++|. ..+|++|+.. +.++++|.||+.|.+
T Consensus 476 g~G~v~~v~V~sGtLk~Gd~vv~g~~---------------~gkVr~m~~~~~~~v~~A~pGd~V~I 527 (787)
T PRK05306 476 GRGPVATVLVQNGTLKVGDIVVAGTT---------------YGRVRAMVDDNGKRVKEAGPSTPVEI 527 (787)
T ss_pred CCeEEEEEEEecCeEecCCEEEECCc---------------EEEEEEEECCCCCCCCEEcCCCeEEE
Confidence 58999999999999999999998753 5799999985 568999999999997
No 42
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.97 E-value=6.5e-29 Score=271.47 Aligned_cols=239 Identities=26% Similarity=0.410 Sum_probs=182.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+.++|+++||+|||||||+++|++... ..+..+|+|++++...+..- . .
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~---~~~e~~GiTq~i~~~~v~~~-~--------------------------~ 291 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI---AQKEAGGITQKIGAYEVEFE-Y--------------------------K 291 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC---ccccCCccccccceEEEEEE-e--------------------------c
Confidence 4557899999999999999999986533 22335788887765322110 0 0
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~ 262 (531)
.....++|||||||++|...+.+++..+|++|||||++++ ..+|+.+++..+...++ |+|+|+||+|+...
T Consensus 292 -------~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG-v~~QT~E~I~~~k~~~i-PiIVViNKiDl~~~ 362 (742)
T CHL00189 292 -------DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG-VKPQTIEAINYIQAANV-PIIVAINKIDKANA 362 (742)
T ss_pred -------CCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC-CChhhHHHHHHHHhcCc-eEEEEEECCCcccc
Confidence 0126899999999999999999999999999999999988 78999999999888886 59999999999753
Q ss_pred HHHHHHHHHHHHH--HhcccCCCCCEEEecccCccchHHHHHHHHccCC--CCCCCCCCCCEEEEEEeeeecCCCCcccC
Q 039945 263 NVAINQHEAIMKF--IQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP--IPERNFIDPPNMIVIRSFDVNKPGFEVDD 338 (531)
Q Consensus 263 ~~~~~~~~~i~~~--l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~--~~~~~~~~~~~~~i~~~~~v~~~~~~~~~ 338 (531)
. .....+++... +.......++++++||++|.|+++|+++|....+ ....+.+.++...|.+++ .++
T Consensus 363 ~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~--------iD~ 433 (742)
T CHL00189 363 N-TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLAEIEDLKADPTQLAQGIILEAH--------LDK 433 (742)
T ss_pred C-HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEE--------EcC
Confidence 2 22222333221 1111123579999999999999999999975432 223345567888887765 345
Q ss_pred CCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeec-ccceeEEecCceEEE
Q 039945 339 IRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAE-QNELQFAVPGGLIGV 404 (531)
Q Consensus 339 ~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~-~~~v~~a~aG~~v~i 404 (531)
++|++++|+|.+|+|++||.|+++|. ..+|++|... +.++++|.||+.|.+
T Consensus 434 ~~G~V~~~~V~sGtLr~GD~vv~g~~---------------~gkVr~m~~~~~~~v~~a~pgdiV~I 485 (742)
T CHL00189 434 TKGPVATILVQNGTLHIGDIIVIGTS---------------YAKIRGMINSLGNKINLATPSSVVEI 485 (742)
T ss_pred CCceEEEEEEEcCEEecCCEEEECCc---------------ceEEEEEEcCCCcCccEEcCCCceEe
Confidence 68999999999999999999998873 4789999854 568999999999987
No 43
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.4e-29 Score=257.15 Aligned_cols=233 Identities=26% Similarity=0.374 Sum_probs=187.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
..-|-|+||+|||||||+.+|.+.... .....|||++++.....+ + .|
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VA---A~E~GGITQhIGAF~V~~---------------------------p-~G- 200 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSVA---AGEAGGITQHIGAFTVTL---------------------------P-SG- 200 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCcee---hhhcCCccceeceEEEec---------------------------C-CC-
Confidence 345889999999999999999876543 223679999998754322 1 12
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHH
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENV 264 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~ 264 (531)
..++|+|||||..|..+..+++..+|+++|||.|++| +++||.|.+..++..++| +||++||||.+..+
T Consensus 201 --------~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDG-VmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~- 269 (683)
T KOG1145|consen 201 --------KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDG-VMPQTLEAIKHAKSANVP-IVVAINKIDKPGAN- 269 (683)
T ss_pred --------CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCC-ccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCC-
Confidence 7899999999999999999999999999999999999 899999999999999975 99999999988543
Q ss_pred HHHHHHHHHH---HHhcccCCCCCEEEecccCccchHHHHHHHHccCC--CCCCCCCCCCEEEEEEeeeecCCCCcccCC
Q 039945 265 AINQHEAIMK---FIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP--IPERNFIDPPNMIVIRSFDVNKPGFEVDDI 339 (531)
Q Consensus 265 ~~~~~~~i~~---~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~--~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~ 339 (531)
.+..++++.. .+ +-.+.+++++|+||++|+|++.|.+++.-... .-+.+...|+..+|.+++- +++
T Consensus 270 pekv~~eL~~~gi~~-E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~v--------dkg 340 (683)
T KOG1145|consen 270 PEKVKRELLSQGIVV-EDLGGDVQVIPISALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSV--------DKG 340 (683)
T ss_pred HHHHHHHHHHcCccH-HHcCCceeEEEeecccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeee--------cCC
Confidence 2333333322 11 11246789999999999999999999863221 2344578899999998873 445
Q ss_pred CceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecc-cceeEEecCceEEE
Q 039945 340 RGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQ-NELQFAVPGGLIGV 404 (531)
Q Consensus 340 ~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~-~~v~~a~aG~~v~i 404 (531)
+|.+.+..|..|+|+.|+.++.+-+ .++|+.|+.++ .++++|.|++.|.+
T Consensus 341 ~G~~aT~iVkrGTLkKG~vlV~G~~---------------w~KVr~l~D~nGk~i~~A~Ps~pv~V 391 (683)
T KOG1145|consen 341 RGPVATVIVKRGTLKKGSVLVAGKS---------------WCKVRALFDHNGKPIDEATPSQPVEV 391 (683)
T ss_pred ccceeEEEEeccccccccEEEEech---------------hhhhhhhhhcCCCCccccCCCCceEe
Confidence 9999999999999999999997543 58999998875 58999999999987
No 44
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-28 Score=253.79 Aligned_cols=235 Identities=24% Similarity=0.329 Sum_probs=181.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.-|.++||+|||||||+..+-+... ......|||++++...+..... .
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~V---a~~EaGGITQhIGA~~v~~~~~--------------------------~--- 53 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNV---AAGEAGGITQHIGAYQVPLDVI--------------------------K--- 53 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCcc---ccccCCceeeEeeeEEEEeccC--------------------------C---
Confidence 4589999999999999999987654 2344789999998754322100 0
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVA 265 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~ 265 (531)
...++|||||||+.|..+..++...+|+++||||+++| +++||.|.+..++..++| +||++||+|+++.+.
T Consensus 54 ------~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDG-v~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~np- 124 (509)
T COG0532 54 ------IPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDG-VMPQTIEAINHAKAAGVP-IVVAINKIDKPEANP- 124 (509)
T ss_pred ------CceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCC-cchhHHHHHHHHHHCCCC-EEEEEecccCCCCCH-
Confidence 15799999999999999999999999999999999999 899999999999999975 999999999985422
Q ss_pred HHHHHHHHH--HHhcccCCCCCEEEecccCccchHHHHHHHHccC--CCCCCCCCCCCEEEEEEeeeecCCCCcccCCCc
Q 039945 266 INQHEAIMK--FIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI--PIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRG 341 (531)
Q Consensus 266 ~~~~~~i~~--~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l--~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G 341 (531)
.....++.+ +..+.+.....++|+||++|+|+++|++.|.-.- ..-+.+.+.+.+..|.++. .++++|
T Consensus 125 ~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~--------~dkG~G 196 (509)
T COG0532 125 DKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVLELKANPEGPARGTVIEVK--------LDKGLG 196 (509)
T ss_pred HHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEE--------eccCCC
Confidence 223333332 1122334568999999999999999999986321 1234566788899998876 345699
Q ss_pred eEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecc-cceeEEecCceEEE
Q 039945 342 GVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQ-NELQFAVPGGLIGV 404 (531)
Q Consensus 342 ~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~-~~v~~a~aG~~v~i 404 (531)
.+++..|..|+|++||.++++.. +.+|+.+.... .+++.+.++..+.+
T Consensus 197 ~vatviv~~GtL~~GD~iv~g~~---------------~g~I~t~v~~~~~~i~~a~ps~~v~i 245 (509)
T COG0532 197 PVATVIVQDGTLKKGDIIVAGGE---------------YGRVRTMVDDLGKPIKEAGPSKPVEI 245 (509)
T ss_pred ceEEEEEecCeEecCCEEEEccC---------------CCceEEeehhcCCCccccCCCCCeEE
Confidence 99999999999999999998764 46777776643 46777777655554
No 45
>PRK00007 elongation factor G; Reviewed
Probab=99.96 E-value=4.6e-28 Score=269.06 Aligned_cols=255 Identities=21% Similarity=0.281 Sum_probs=188.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH---CC------------CcCccccceecceEeeecceeeeeecccCCCCCCCcccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYK 167 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~---g~------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r 167 (531)
...+||+|+||+|+|||||+++|+ |. ..+..+.|++||+|++.....+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~----------------- 70 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTC----------------- 70 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEE-----------------
Confidence 446899999999999999999997 32 1244568889999998765432
Q ss_pred ccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC
Q 039945 168 AYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL 247 (531)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~ 247 (531)
.|.+ ..++|+|||||.+|..++.+++..+|++|+|||+..+ ...|+..++..+...+.
T Consensus 71 ------------~~~~---------~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g-~~~qt~~~~~~~~~~~~ 128 (693)
T PRK00007 71 ------------FWKD---------HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGG-VEPQSETVWRQADKYKV 128 (693)
T ss_pred ------------EECC---------eEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCC-cchhhHHHHHHHHHcCC
Confidence 2222 7899999999999999999999999999999999998 89999999999999997
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHHHHHHhc-------------------------------------------------
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAIMKFIQG------------------------------------------------- 278 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~------------------------------------------------- 278 (531)
+ .|+++||+|+.+.+ .....+++++.+..
T Consensus 129 p-~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (693)
T PRK00007 129 P-RIAFVNKMDRTGAD-FYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKD 206 (693)
T ss_pred C-EEEEEECCCCCCCC-HHHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHH
Confidence 6 68999999987432 11122222111110
Q ss_pred -------------------------------------------ccCCCCCEEEecccCccchHHHHHHHHccCCCCCC--
Q 039945 279 -------------------------------------------TVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPER-- 313 (531)
Q Consensus 279 -------------------------------------------~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~-- 313 (531)
.....+|+++.||+++.|++.|++.|.+++|.|..
T Consensus 207 ~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~ 286 (693)
T PRK00007 207 KAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVP 286 (693)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcc
Confidence 00134578888999999999999999999998742
Q ss_pred ------------------CCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCcee
Q 039945 314 ------------------NFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIK 375 (531)
Q Consensus 314 ------------------~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~ 375 (531)
+.+.|+.++|+++. .+++.|.+.++||.+|+|+.||.|+..-. +
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~--------~d~~~G~ia~~RV~sGtl~~g~~v~~~~~----~------ 348 (693)
T PRK00007 287 AIKGILPDGEEEEVERKASDDEPFSALAFKIM--------TDPFVGKLTFFRVYSGVLESGSYVLNSTK----G------ 348 (693)
T ss_pred cccccCCCccccceeecCCCCCCeEEEEEEee--------ecCCCCcEEEEEEeeeEEcCCCEEEeCCC----C------
Confidence 12457778886654 35668999999999999999999973211 1
Q ss_pred eccceeeeEEeee----cccceeEEecCceEEEeeecCccccccccccceeeccC
Q 039945 376 CTPIYSRIVSLFA----EQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEV 426 (531)
Q Consensus 376 ~~~~~~~V~si~~----~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~ 426 (531)
...+|..|.. ...++++|.|||++++. ++. ++..|+.|+.+
T Consensus 349 ---~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~-----gl~--~~~~GdtL~~~ 393 (693)
T PRK00007 349 ---KKERIGRILQMHANKREEIKEVRAGDIAAAV-----GLK--DTTTGDTLCDE 393 (693)
T ss_pred ---ceeEeceeEEeccCCcccccccCCCcEEEEe-----CCc--cCCcCCEeeCC
Confidence 1234444443 24689999999999873 221 34567776543
No 46
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.96 E-value=1.1e-27 Score=258.04 Aligned_cols=241 Identities=20% Similarity=0.279 Sum_probs=170.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.-|+++||+|||||||+|+|++... ..+..+++|.+++...+....... .... ......+.
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v---~~~e~ggiTq~iG~~~v~~~~~~~-------~~~~------~~~~~~v~--- 65 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAV---AKREAGGITQHIGATEIPMDVIEG-------ICGD------LLKKFKIR--- 65 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc---ccccCCceecccCeeEeeeccccc-------cccc------cccccccc---
Confidence 4589999999999999999998643 233346788877765432110000 0000 00000000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH-HH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE-NV 264 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~-~~ 264 (531)
.....++|||||||++|...+.++++.+|++++|+|++++ ..+++.+++.++...++ |+|+++||+|+... ..
T Consensus 66 ----~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g-~~~qt~e~i~~l~~~~v-piIVv~NK~Dl~~~~~~ 139 (590)
T TIGR00491 66 ----LKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEG-FKPQTQEALNILRMYKT-PFVVAANKIDRIPGWRS 139 (590)
T ss_pred ----cccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcC-CCHhHHHHHHHHHHcCC-CEEEEEECCCccchhhh
Confidence 0002589999999999999999999999999999999988 78999999988888876 58999999999631 10
Q ss_pred ------H-------HHH-------HHHHHHHHhcc------------cCCCCCEEEecccCccchHHHHHHHHcc----C
Q 039945 265 ------A-------INQ-------HEAIMKFIQGT------------VADGAPVVPISAQLKYNIDVVCEYIVKK----I 308 (531)
Q Consensus 265 ------~-------~~~-------~~~i~~~l~~~------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~----l 308 (531)
. ... ...+...+.+. .....+++|+||++|+|+++|+++|... +
T Consensus 140 ~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l 219 (590)
T TIGR00491 140 HEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL 219 (590)
T ss_pred ccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence 0 000 00111112211 1246799999999999999999988632 2
Q ss_pred CC-CCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEee
Q 039945 309 PI-PERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLF 387 (531)
Q Consensus 309 ~~-~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~ 387 (531)
+. -+.+.+.|++++|.++|...+ +|++++|+|.+|+|++||.|+++|.. .|..++|++|.
T Consensus 220 ~~~l~~~~~~~~~~~V~e~~~~~G--------~G~v~t~~v~~G~l~~GD~iv~~~~~-----------~~i~~kVr~l~ 280 (590)
T TIGR00491 220 EEQLKLEEEGPARGTILEVKEETG--------LGMTIDAVIYDGILRKGDTIAMAGSD-----------DVIVTRVRALL 280 (590)
T ss_pred hhhhccCCCCCeEEEEEEEEEcCC--------CceEEEEEEEcCEEeCCCEEEEccCC-----------CcccEEEEEec
Confidence 21 233567899999999997765 89999999999999999999999973 23568899988
Q ss_pred ecc
Q 039945 388 AEQ 390 (531)
Q Consensus 388 ~~~ 390 (531)
..+
T Consensus 281 ~~~ 283 (590)
T TIGR00491 281 KPR 283 (590)
T ss_pred CCC
Confidence 754
No 47
>PRK12739 elongation factor G; Reviewed
Probab=99.96 E-value=5.3e-28 Score=268.73 Aligned_cols=255 Identities=22% Similarity=0.277 Sum_probs=188.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC---------------CcCccccceecceEeeecceeeeeecccCCCCCCCcccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV---------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYK 167 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~---------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r 167 (531)
...+||+|+||+|+|||||+++|+.. ..+..+.|++||+|++.....+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~----------------- 68 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTC----------------- 68 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEE-----------------
Confidence 45689999999999999999999731 1245568889999998866432
Q ss_pred ccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC
Q 039945 168 AYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL 247 (531)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~ 247 (531)
+|.+ ..++|||||||.+|..++.+++..+|++|+|||+.++ ...|++.++..+...+.
T Consensus 69 ------------~~~~---------~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g-~~~qt~~i~~~~~~~~~ 126 (691)
T PRK12739 69 ------------FWKG---------HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG-VEPQSETVWRQADKYGV 126 (691)
T ss_pred ------------EECC---------EEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC-CCHHHHHHHHHHHHcCC
Confidence 2222 7899999999999999999999999999999999998 79999999999988886
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHHHHHHhc-------------------------------------------------
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAIMKFIQG------------------------------------------------- 278 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~------------------------------------------------- 278 (531)
+ +|+++||+|+...+ .....+++++.+..
T Consensus 127 p-~iv~iNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (691)
T PRK12739 127 P-RIVFVNKMDRIGAD-FFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKE 204 (691)
T ss_pred C-EEEEEECCCCCCCC-HHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHH
Confidence 5 78999999998532 12222222222110
Q ss_pred ---------------------------c----------------cCCCCCEEEecccCccchHHHHHHHHccCCCCCC--
Q 039945 279 ---------------------------T----------------VADGAPVVPISAQLKYNIDVVCEYIVKKIPIPER-- 313 (531)
Q Consensus 279 ---------------------------~----------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~-- 313 (531)
. ....+|+++.||.++.|++.|+++|.+++|.|..
T Consensus 205 ~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~ 284 (691)
T PRK12739 205 KAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVP 284 (691)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcc
Confidence 0 0123478888999999999999999999998742
Q ss_pred -----------------CCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceee
Q 039945 314 -----------------NFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376 (531)
Q Consensus 314 -----------------~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~ 376 (531)
+.+.|+.+.|++.+ .++++|.+.++||.+|+|+.||.|...-.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~--------~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~----------- 345 (691)
T PRK12739 285 AIKGINPDTEEEIERPASDDEPFAALAFKIM--------TDPFVGRLTFFRVYSGVLESGSYVLNTTKG----------- 345 (691)
T ss_pred ccccccCCCCcceeeccCCCCCeEEEEEEee--------eCCCCCeEEEEEEeeeEEcCCCEEEeCCCC-----------
Confidence 23557788886665 356689999999999999999998733221
Q ss_pred ccceeeeEEe---ee-cccceeEEecCceEEEeeecCccccccccccceeeccC
Q 039945 377 TPIYSRIVSL---FA-EQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEV 426 (531)
Q Consensus 377 ~~~~~~V~si---~~-~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~ 426 (531)
...+|..| .. ...++++|.|||++++. ++. +...|+.|+..
T Consensus 346 --~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-----gl~--~~~~gdtl~~~ 390 (691)
T PRK12739 346 --KKERIGRLLQMHANKREEIKEVYAGDIAAAV-----GLK--DTTTGDTLCDE 390 (691)
T ss_pred --ceEEecceEEEecCCcccccccCCCCEEEEe-----CCC--cccCCCEEeCC
Confidence 12234444 33 24689999999999874 221 24567777544
No 48
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.96 E-value=4.8e-29 Score=234.44 Aligned_cols=169 Identities=35% Similarity=0.504 Sum_probs=137.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC---------------cCccccceecceEeeecceeeeeecccCCCCCCCcccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ---------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYK 167 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~---------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r 167 (531)
++.+||+++||+|||||||+++|++.. .+.+++|.++++|+++.+..+. +
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~-~-------------- 65 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE-K-------------- 65 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE-B--------------
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc-c--------------
Confidence 356899999999999999999998322 2345688889999987764331 0
Q ss_pred ccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC
Q 039945 168 AYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL 247 (531)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~ 247 (531)
....+.++|||||||.+|.+++.+++..+|++|+|||+.++ ...++.+++.++..+++
T Consensus 66 ---------------------~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g-~~~~~~~~l~~~~~~~~ 123 (188)
T PF00009_consen 66 ---------------------NENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG-IQPQTEEHLKILRELGI 123 (188)
T ss_dssp ---------------------TESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB-STHHHHHHHHHHHHTT-
T ss_pred ---------------------cccccceeecccccccceeecccceecccccceeeeecccc-ccccccccccccccccc
Confidence 01127999999999999999999999999999999999998 89999999999999998
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHHH-HHHhcccCC---CCCEEEecccCccchHHHHHHHHccCCC
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAIM-KFIQGTVAD---GAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i~-~~l~~~~~~---~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
| +|+|+||||+. ..++.+..+++. .+++..... .+|++++||++|+|+++|+++|.+.+|.
T Consensus 124 p-~ivvlNK~D~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 124 P-IIVVLNKMDLI-EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLPS 188 (188)
T ss_dssp S-EEEEEETCTSS-HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred c-eEEeeeeccch-hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence 7 99999999999 455666777776 454544332 4799999999999999999999998873
No 49
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.96 E-value=5.7e-28 Score=269.81 Aligned_cols=261 Identities=25% Similarity=0.325 Sum_probs=193.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHC---C----------CcCccccceecceEeeecceeeeeecccCCCCCCCcccccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISG---V----------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAY 169 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g---~----------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~ 169 (531)
.+.+||+++||+|+|||||+++|+. . ..+..+.|++||||++.+...+.. .+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~-~~-------------- 82 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVH-EY-------------- 82 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEE-Ee--------------
Confidence 4458999999999999999999972 1 134567899999999876543311 00
Q ss_pred CCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce
Q 039945 170 GSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH 249 (531)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~ 249 (531)
. ..+..++|+|||||.+|...+.+++..+|++|+|||+.++ ...+++.++..+...+.+
T Consensus 83 ------------~-------~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g-~~~~t~~~~~~~~~~~~~- 141 (731)
T PRK07560 83 ------------E-------GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEG-VMPQTETVLRQALRERVK- 141 (731)
T ss_pred ------------c-------CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCC-CCccHHHHHHHHHHcCCC-
Confidence 0 0126899999999999999999999999999999999998 899999999988778876
Q ss_pred EEEEEeccCCccH------HH----HHHHHHHHHHHHhccc-----------CCCCCEEEecccCccchH----------
Q 039945 250 IIILQNKVDLIQE------NV----AINQHEAIMKFIQGTV-----------ADGAPVVPISAQLKYNID---------- 298 (531)
Q Consensus 250 iIvviNK~Dl~~~------~~----~~~~~~~i~~~l~~~~-----------~~~~~ii~iSa~~g~gi~---------- 298 (531)
.|+++||+|+... .. +....+++..++..+. .....+++.||+.++++.
T Consensus 142 ~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~ 221 (731)
T PRK07560 142 PVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIK 221 (731)
T ss_pred eEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCC
Confidence 5899999998621 12 2223333333333211 122357788999988875
Q ss_pred ------------------------HHHHHHHccCCCCCC-------------------------CCCCCCEEEEEEeeee
Q 039945 299 ------------------------VVCEYIVKKIPIPER-------------------------NFIDPPNMIVIRSFDV 329 (531)
Q Consensus 299 ------------------------~L~~~L~~~l~~~~~-------------------------~~~~~~~~~i~~~~~v 329 (531)
.|+++|.+.+|.|.. +.+.|+.+.|++++
T Consensus 222 ~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~-- 299 (731)
T PRK07560 222 FKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDII-- 299 (731)
T ss_pred HHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeE--
Confidence 789999999998842 22457778887665
Q ss_pred cCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeec----ccceeEEecCceEEEe
Q 039945 330 NKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAE----QNELQFAVPGGLIGVG 405 (531)
Q Consensus 330 ~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~----~~~v~~a~aG~~v~i~ 405 (531)
.++++|.+++|||.+|+|++||.|++.+.+ ...+|..|+.. ..++++|.||+++++.
T Consensus 300 ------~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~-------------~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~ 360 (731)
T PRK07560 300 ------VDPHAGEVATGRVFSGTLRKGQEVYLVGAK-------------KKNRVQQVGIYMGPEREEVEEIPAGNIAAVT 360 (731)
T ss_pred ------EcCCCCeEEEEEEEEeEEcCCCEEEEcCCC-------------CceEeheehhhhcCCCceeeeECCCCEEEEE
Confidence 355689999999999999999999987753 13466666543 4579999999999983
Q ss_pred eecCccccccccccceeeccCC
Q 039945 406 TTMDPTLTRADRLVGQVLGEVG 427 (531)
Q Consensus 406 l~~~~~~~~~~i~~G~vl~~~~ 427 (531)
++ .++..|++|+.++
T Consensus 361 -----gl--~~~~~GdtL~~~~ 375 (731)
T PRK07560 361 -----GL--KDARAGETVVSVE 375 (731)
T ss_pred -----cc--cccccCCEEeCCC
Confidence 22 2455788886554
No 50
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.96 E-value=3.4e-27 Score=255.49 Aligned_cols=255 Identities=20% Similarity=0.243 Sum_probs=177.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
..|+++||+|||||||+++|.+.... .....++|.+++.+.......+. ..+.+... ....+.+
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~---~~~~g~itq~ig~~~~~~~~~~~----~~~~~~~~-----~~~~~~~---- 70 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVA---AKEAGGITQHIGATEVPIDVIEK----IAGPLKKP-----LPIKLKI---- 70 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccc---cCCCCceEEeeceeecccccccc----ccceeccc-----ccccccc----
Confidence 56999999999999999999876432 23346788887754321100000 00000000 0000111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc-HH-
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ-EN- 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~-~~- 263 (531)
..++|||||||++|...+.+++..+|++++|+|++.+ ..+++.+++.++...++| +++++||+|+.. +.
T Consensus 71 -------~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g-~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~ 141 (586)
T PRK04004 71 -------PGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG-FQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKS 141 (586)
T ss_pred -------CCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC-CCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhh
Confidence 2389999999999999888899999999999999998 789999999988888865 899999999852 11
Q ss_pred -------------------HHHHHHHHHHHHHhccc------------CCCCCEEEecccCccchHHHHHHHHcc----C
Q 039945 264 -------------------VAINQHEAIMKFIQGTV------------ADGAPVVPISAQLKYNIDVVCEYIVKK----I 308 (531)
Q Consensus 264 -------------------~~~~~~~~i~~~l~~~~------------~~~~~ii~iSa~~g~gi~~L~~~L~~~----l 308 (531)
.+.+...++...|.+.+ ....+++++||++|+|+++|++.+... +
T Consensus 142 ~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l 221 (586)
T PRK04004 142 TEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYL 221 (586)
T ss_pred hcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHH
Confidence 11112222323333211 245789999999999999999887532 3
Q ss_pred CCC-CCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEee
Q 039945 309 PIP-ERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLF 387 (531)
Q Consensus 309 ~~~-~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~ 387 (531)
+.+ ..+.+.|++++|++++...+ .|++++|+|.+|+|++||.|+++|.. .|..++|++|.
T Consensus 222 ~~~l~~~~~~~~~~~V~ev~~~~g--------~G~v~~~~v~~GtL~~Gd~vv~~~~~-----------~~i~~kVr~l~ 282 (586)
T PRK04004 222 EERLKIDVEGPGKGTVLEVKEERG--------LGTTIDVILYDGTLRKGDTIVVGGKD-----------GPIVTKVRALL 282 (586)
T ss_pred HHhhccCCCCCeEEEEEEEEEeCC--------CceEEEEEEEcCEEECCCEEEECcCC-----------CcceEEEEEEe
Confidence 322 34567899999999986544 89999999999999999999999863 12457899998
Q ss_pred ecc------------cceeEEecCceEEE
Q 039945 388 AEQ------------NELQFAVPGGLIGV 404 (531)
Q Consensus 388 ~~~------------~~v~~a~aG~~v~i 404 (531)
..+ ..+++|.|...|-+
T Consensus 283 ~~~~~~e~~~~~~~~~~~~~~~~~~~v~i 311 (586)
T PRK04004 283 KPRPLDEMRDPEDKFKPVDEVVAAAGVKI 311 (586)
T ss_pred cCcchhhccccccccccccccCCCCceEE
Confidence 752 35566666655554
No 51
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.96 E-value=1.4e-27 Score=227.04 Aligned_cols=202 Identities=72% Similarity=1.125 Sum_probs=153.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
+||+++||.|+|||||+.+|++...+...+|.++++|+..+++.+......+..+..+..|..- .......+.-.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--- 75 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSK--EDSPECECPGC--- 75 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccc--ccccccccccc---
Confidence 5899999999999999999999888888999999999999988765443333333333322210 00000111100
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVA 265 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~ 265 (531)
+...+..+.++|||||||++|...+..++..+|++++|+|++.+....++.+++..+...+.+|+|+|+||+|+.+....
T Consensus 76 ~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~ 155 (203)
T cd01888 76 GGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQA 155 (203)
T ss_pred CCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHH
Confidence 01112237899999999999999999999999999999999975456788888888887888889999999999876666
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCC
Q 039945 266 INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPE 312 (531)
Q Consensus 266 ~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~ 312 (531)
....+++.++++.+.....+++++||++|+|+++|+++|.+.+|.|.
T Consensus 156 ~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 156 LENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 66667777777654334678999999999999999999999888775
No 52
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=6.6e-28 Score=227.03 Aligned_cols=168 Identities=34% Similarity=0.527 Sum_probs=137.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCC-------------CcCccccceecceEeeecceeeeeecccCCCCCCCccccccCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGS 171 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 171 (531)
++||+++||+|+|||||+++|++. ..++.++|++||+|++.....+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~--------------------- 60 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEY--------------------- 60 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEe---------------------
Confidence 589999999999999999999843 1345678999999998764321
Q ss_pred CCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEE
Q 039945 172 GKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHII 251 (531)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iI 251 (531)
++. ...++|+|||||.+|...+.+++..+|++++|||+..+ ..+++++++.++...+++++|
T Consensus 61 --------~~~---------~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~~~iI 122 (195)
T cd01884 61 --------ETA---------NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDG-PMPQTREHLLLARQVGVPYIV 122 (195)
T ss_pred --------cCC---------CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCcEE
Confidence 111 26899999999999999999999999999999999998 799999999999999987788
Q ss_pred EEEeccCCccHHH-HHHHHHHHHHHHhcccC--CCCCEEEecccCccc----------hHHHHHHHHccCCCC
Q 039945 252 ILQNKVDLIQENV-AINQHEAIMKFIQGTVA--DGAPVVPISAQLKYN----------IDVVCEYIVKKIPIP 311 (531)
Q Consensus 252 vviNK~Dl~~~~~-~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~g----------i~~L~~~L~~~l~~~ 311 (531)
+|+||+|+..... .+...+++.++++..+. .+++++|+||++|.| +..|+++|....|.|
T Consensus 123 vviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 123 VFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhCCCCC
Confidence 9999999975333 34456678888875433 568999999999997 468999998666543
No 53
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.96 E-value=6.9e-27 Score=250.07 Aligned_cols=243 Identities=19% Similarity=0.229 Sum_probs=176.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH---CC----------------CcCccccceecceEeeecceeeeeecccCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS---GV----------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRP 163 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~---g~----------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~ 163 (531)
...+||+|+||+|+|||||+++|+ |. ..+.++.|++||+|+......+
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~------------- 74 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQF------------- 74 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEE-------------
Confidence 345899999999999999999996 21 1233567788888876654221
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHH
Q 039945 164 MCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVE 243 (531)
Q Consensus 164 ~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~ 243 (531)
+|.+ ..++|||||||.+|...+.+++..+|++|+|+|+..+ ...++..++..+.
T Consensus 75 ----------------~~~~---------~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-v~~~t~~l~~~~~ 128 (526)
T PRK00741 75 ----------------PYRD---------CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG-VEPQTRKLMEVCR 128 (526)
T ss_pred ----------------EECC---------EEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC-CCHHHHHHHHHHH
Confidence 2222 6899999999999999999999999999999999998 7888999888888
Q ss_pred HcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhc---------------------------------------------
Q 039945 244 IMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQG--------------------------------------------- 278 (531)
Q Consensus 244 ~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~--------------------------------------------- 278 (531)
..++| +++++||+|+...+. .+..+++++.+..
T Consensus 129 ~~~iP-iiv~iNK~D~~~a~~-~~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~ 206 (526)
T PRK00741 129 LRDTP-IFTFINKLDRDGREP-LELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKG 206 (526)
T ss_pred hcCCC-EEEEEECCcccccCH-HHHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccC
Confidence 88865 899999999875321 1112222211110
Q ss_pred --------c-----------------------------cCCCCCEEEecccCccchHHHHHHHHccCCCCCCC-------
Q 039945 279 --------T-----------------------------VADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERN------- 314 (531)
Q Consensus 279 --------~-----------------------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~------- 314 (531)
+ .....|+++.||+++.|+..|+++|.+++|.|...
T Consensus 207 ~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~ 286 (526)
T PRK00741 207 LDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREV 286 (526)
T ss_pred CCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceee
Confidence 0 01236899999999999999999999999988431
Q ss_pred --CCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEE---eee-
Q 039945 315 --FIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVS---LFA- 388 (531)
Q Consensus 315 --~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~s---i~~- 388 (531)
.+.+|...|+++.. + -.++++|.+++.||.||+++.|+.|.....+ ...+|.. +..
T Consensus 287 ~~~~~~~~~~VFK~~~-~----m~~~~~grlafvRV~sG~l~~g~~v~~~~~~-------------k~~ri~~~~~~~g~ 348 (526)
T PRK00741 287 EPTEEKFSGFVFKIQA-N----MDPKHRDRIAFVRVCSGKFEKGMKVRHVRTG-------------KDVRISNALTFMAQ 348 (526)
T ss_pred cCCCCceEEEEEEEEe-c----CCCCcCceEEEEEEeccEECCCCEEEeccCC-------------ceEEecceEEEecC
Confidence 13456777755431 0 0134689999999999999999999854432 1233433 333
Q ss_pred cccceeEEecCceEEE
Q 039945 389 EQNELQFAVPGGLIGV 404 (531)
Q Consensus 389 ~~~~v~~a~aG~~v~i 404 (531)
.+..+++|.|||++++
T Consensus 349 ~~~~v~~a~aGDIv~v 364 (526)
T PRK00741 349 DREHVEEAYAGDIIGL 364 (526)
T ss_pred CceECceeCCCCEEEE
Confidence 3467999999999998
No 54
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.95 E-value=5.2e-27 Score=260.98 Aligned_cols=259 Identities=21% Similarity=0.262 Sum_probs=186.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC---------------CcCccccceecceEeeecceeeeeecccCCCCCCCcccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV---------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYK 167 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~---------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r 167 (531)
.+.+||+|+||+|+|||||+++|+.. ..+..+.|+++|+|++..+..+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~----------------- 70 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTV----------------- 70 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEE-----------------
Confidence 44689999999999999999999721 1234467888999988765432
Q ss_pred ccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC
Q 039945 168 AYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL 247 (531)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~ 247 (531)
.|. +..++|||||||.+|...+..+++.+|++++|+|+..+ ...++..++..+...++
T Consensus 71 ------------~~~---------~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~ 128 (689)
T TIGR00484 71 ------------FWK---------GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGG-VQPQSETVWRQANRYEV 128 (689)
T ss_pred ------------EEC---------CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCC-CChhHHHHHHHHHHcCC
Confidence 222 27899999999999999999999999999999999998 78899999988888886
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHHHHHH---------------------------------------------------
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAIMKFI--------------------------------------------------- 276 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~l--------------------------------------------------- 276 (531)
+ +++++||+|+.... .....+++.+.+
T Consensus 129 p-~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (689)
T TIGR00484 129 P-RIAFVNKMDKTGAN-FLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQ 206 (689)
T ss_pred C-EEEEEECCCCCCCC-HHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHH
Confidence 5 78899999987532 111222222111
Q ss_pred ------------------------hc----------------ccCCCCCEEEecccCccchHHHHHHHHccCCCCCC---
Q 039945 277 ------------------------QG----------------TVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPER--- 313 (531)
Q Consensus 277 ------------------------~~----------------~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~--- 313 (531)
.+ .....+|+++.||+++.|++.|+++|..++|.|..
T Consensus 207 ~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~ 286 (689)
T TIGR00484 207 AKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPA 286 (689)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhccc
Confidence 00 00234578888999999999999999999998742
Q ss_pred ----------------CCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeec
Q 039945 314 ----------------NFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCT 377 (531)
Q Consensus 314 ----------------~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~ 377 (531)
+.+.++.++|+++. .+++.|.+.++||.+|+|+.||.|+..-.+ .. .
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~--------~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~----~~--~--- 349 (689)
T TIGR00484 287 IKGIDPDTEKEIERKASDDEPFSALAFKVA--------TDPFVGQLTFVRVYSGVLKSGSYVKNSRKN----KK--E--- 349 (689)
T ss_pred ccccCCCCCceeeecCCCCCceEEEEEEee--------ecCCCCeEEEEEEEEeEEcCCCEEEeCCCC----ce--E---
Confidence 12457788886654 356789999999999999999999843211 10 0
Q ss_pred cceeeeEEeeec-ccceeEEecCceEEEeeecCccccccccccceeeccCC
Q 039945 378 PIYSRIVSLFAE-QNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVG 427 (531)
Q Consensus 378 ~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~ 427 (531)
...++.-+... ..++++|.|||++++. ++ .+...|+.|+.+.
T Consensus 350 -~i~~l~~~~g~~~~~v~~~~aGdI~~i~-----gl--~~~~~gdtl~~~~ 392 (689)
T TIGR00484 350 -RVGRLVKMHANNREEIKEVRAGDICAAI-----GL--KDTTTGDTLCDPK 392 (689)
T ss_pred -EecceEEeecCCcccccccCCCCEEEEc-----CC--CCCCCCCEEeCCC
Confidence 11233333322 4589999999999873 22 1345677776443
No 55
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.95 E-value=1.6e-26 Score=247.30 Aligned_cols=242 Identities=18% Similarity=0.237 Sum_probs=177.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH---CC----------------CcCccccceecceEeeecceeeeeecccCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS---GV----------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRP 163 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~---g~----------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~ 163 (531)
.+.+||+|+||+|+|||||+++|+ |. ..+..+.|++||+|+......+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~------------- 75 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF------------- 75 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE-------------
Confidence 445899999999999999999985 11 1233467888888887654321
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHH
Q 039945 164 MCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVE 243 (531)
Q Consensus 164 ~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~ 243 (531)
+|.+ ..++|||||||.+|...+.+++..+|++|+|+|+..+ ...++..++..++
T Consensus 76 ----------------~~~~---------~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-v~~~t~~l~~~~~ 129 (527)
T TIGR00503 76 ----------------PYRD---------CLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG-VETRTRKLMEVTR 129 (527)
T ss_pred ----------------eeCC---------eEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHH
Confidence 2222 6899999999999999999999999999999999988 7888888888887
Q ss_pred HcCCceEEEEEeccCCccHHHHHHHHHHHHHHHh----------------------------------------------
Q 039945 244 IMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQ---------------------------------------------- 277 (531)
Q Consensus 244 ~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~---------------------------------------------- 277 (531)
..++ |+++++||+|+...+ ..+..+++++.+.
T Consensus 130 ~~~~-PiivviNKiD~~~~~-~~~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~ 207 (527)
T TIGR00503 130 LRDT-PIFTFMNKLDRDIRD-PLELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKG 207 (527)
T ss_pred hcCC-CEEEEEECccccCCC-HHHHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhcc
Confidence 7775 589999999986321 1111122211111
Q ss_pred --------------------------c----------ccCCCCCEEEecccCccchHHHHHHHHccCCCCCCC-------
Q 039945 278 --------------------------G----------TVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERN------- 314 (531)
Q Consensus 278 --------------------------~----------~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~------- 314 (531)
+ ......|+++.||.++.|++.|++.|.+++|.|...
T Consensus 208 ~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~ 287 (527)
T TIGR00503 208 LNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTV 287 (527)
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceec
Confidence 0 002335789999999999999999999999988532
Q ss_pred --CCCCCEEEEEEeeeecCCCCccc-CCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeee---
Q 039945 315 --FIDPPNMIVIRSFDVNKPGFEVD-DIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFA--- 388 (531)
Q Consensus 315 --~~~~~~~~i~~~~~v~~~~~~~~-~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~--- 388 (531)
.+.+|...|+++.. .+| +++|.+++.||.||+++.|+.|...-.+ ...++..++.
T Consensus 288 ~~~~~~~~~~VFK~~~------~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~-------------k~~ri~~~~~~~g 348 (527)
T TIGR00503 288 EPTEEKFSGFVFKIQA------NMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTG-------------KDVVISDALTFMA 348 (527)
T ss_pred CCCCCCeeEEEEEEEe------ccCcccCceEEEEEEeeeEEcCCCEEEecCCC-------------CcEEecchhhhhc
Confidence 23567777755431 135 3799999999999999999999854332 1234544433
Q ss_pred -cccceeEEecCceEEE
Q 039945 389 -EQNELQFAVPGGLIGV 404 (531)
Q Consensus 389 -~~~~v~~a~aG~~v~i 404 (531)
.+.++++|.|||++++
T Consensus 349 ~~~~~v~~a~aGDI~~~ 365 (527)
T TIGR00503 349 GDREHVEEAYAGDIIGL 365 (527)
T ss_pred CCceEcceeCCCCEEEE
Confidence 3457999999999987
No 56
>PRK13351 elongation factor G; Reviewed
Probab=99.95 E-value=6.6e-27 Score=260.76 Aligned_cols=258 Identities=22% Similarity=0.282 Sum_probs=186.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC---------------cCccccceecceEeeecceeeeeecccCCCCCCCcccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ---------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYK 167 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~---------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r 167 (531)
...+||+++||+|+|||||+++|+... .+....|+++++|+...+..+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~----------------- 68 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSC----------------- 68 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEE-----------------
Confidence 345899999999999999999997321 123345667787776654322
Q ss_pred ccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC
Q 039945 168 AYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL 247 (531)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~ 247 (531)
.|. ...++|||||||.+|...+..+++.+|++++|+|++.+ ...++..++..+...++
T Consensus 69 ------------~~~---------~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~-~~~~~~~~~~~~~~~~~ 126 (687)
T PRK13351 69 ------------DWD---------NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTG-VQPQTETVWRQADRYGI 126 (687)
T ss_pred ------------EEC---------CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHhcCC
Confidence 222 27899999999999999999999999999999999988 78888888888888875
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHHHHHHhc-------------------------------------------------
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAIMKFIQG------------------------------------------------- 278 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~------------------------------------------------- 278 (531)
| +++|+||+|+...+ +....+++++.+..
T Consensus 127 p-~iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (687)
T PRK13351 127 P-RLIFINKMDRVGAD-LFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLE 204 (687)
T ss_pred C-EEEEEECCCCCCCC-HHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHH
Confidence 5 78999999987532 22233333222111
Q ss_pred -----------------------c--------------------cCCCCCEEEecccCccchHHHHHHHHccCCCCCC--
Q 039945 279 -----------------------T--------------------VADGAPVVPISAQLKYNIDVVCEYIVKKIPIPER-- 313 (531)
Q Consensus 279 -----------------------~--------------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~-- 313 (531)
+ ....+|+++.||++|.|++.|+++|..++|.|..
T Consensus 205 ~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~ 284 (687)
T PRK13351 205 EVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVP 284 (687)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcc
Confidence 0 0124578888999999999999999999998842
Q ss_pred ----------------CCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeec
Q 039945 314 ----------------NFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCT 377 (531)
Q Consensus 314 ----------------~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~ 377 (531)
+.+.|+.+.|++++ .++++|.++++||.+|+|+.||.|++.+.+. .+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~--------~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~------~~--- 347 (687)
T PRK13351 285 PPRGSKDNGKPVKVDPDPEKPLLALVFKVQ--------YDPYAGKLTYLRVYSGTLRAGSQLYNGTGGK------RE--- 347 (687)
T ss_pred cccccCCCCCceeecCCCCCCeEEEEEEee--------ecCCCceEEEEEEeEEEEcCCCEEEeCCCCC------ce---
Confidence 23567888887766 3455899999999999999999999876531 10
Q ss_pred cceeeeEEee-ecccceeEEecCceEEEeeecCccccccccccceeeccC
Q 039945 378 PIYSRIVSLF-AEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEV 426 (531)
Q Consensus 378 ~~~~~V~si~-~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~ 426 (531)
...++..+. ....++++|.|||++++. ++. +...|+.|+..
T Consensus 348 -~i~~i~~~~g~~~~~v~~~~aGdI~~i~-----gl~--~~~~gdtl~~~ 389 (687)
T PRK13351 348 -KVGRLFRLQGNKREEVDRAKAGDIVAVA-----GLK--ELETGDTLHDS 389 (687)
T ss_pred -EeeeEEEEccCCeeECCccCCCCEEEEE-----Ccc--cCccCCEEeCC
Confidence 112344442 234689999999999873 221 33457766543
No 57
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.5e-26 Score=251.40 Aligned_cols=241 Identities=22% Similarity=0.309 Sum_probs=185.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH---CC------------CcCccccceecceEeeecceeeeeecccCCCCCCCcccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYK 167 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~---g~------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r 167 (531)
...+||+|+||.+||||||..+|+ |. ..|.++.|++||||+..+..++
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~----------------- 70 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTL----------------- 70 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEE-----------------
Confidence 456899999999999999999997 21 2456689999999998876432
Q ss_pred ccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC
Q 039945 168 AYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL 247 (531)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~ 247 (531)
.|.| ...|+|||||||-||...+.++++.+|++++|+||.+| .++||...|+.+...++
T Consensus 71 ------------~~~~--------~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveG-V~~QTEtv~rqa~~~~v 129 (697)
T COG0480 71 ------------FWKG--------DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEG-VEPQTETVWRQADKYGV 129 (697)
T ss_pred ------------EEcC--------ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCC-eeecHHHHHHHHhhcCC
Confidence 2221 17899999999999999999999999999999999999 89999999999999998
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHH-------------------------------------------------------
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAI------------------------------------------------------- 272 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i------------------------------------------------------- 272 (531)
| .|+++||||+...+.. ...+++
T Consensus 130 p-~i~fiNKmDR~~a~~~-~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 207 (697)
T COG0480 130 P-RILFVNKMDRLGADFY-LVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAE 207 (697)
T ss_pred C-eEEEEECccccccChh-hhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHH
Confidence 7 5889999998743211 000000
Q ss_pred ------------------HHHHhcc----------------cCCCCCEEEecccCccchHHHHHHHHccCCCCCC-----
Q 039945 273 ------------------MKFIQGT----------------VADGAPVVPISAQLKYNIDVVCEYIVKKIPIPER----- 313 (531)
Q Consensus 273 ------------------~~~l~~~----------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~----- 313 (531)
..++.+. .....|+++-||.++.|++.|++++.+++|.|..
T Consensus 208 e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~ 287 (697)
T COG0480 208 EAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIK 287 (697)
T ss_pred HHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhccccc
Confidence 1111110 0125789999999999999999999999998721
Q ss_pred ---------------CCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeecc
Q 039945 314 ---------------NFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTP 378 (531)
Q Consensus 314 ---------------~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~ 378 (531)
+.+.|+.+.+++.. .+++.|.+.++||.||+|+.||.++....+
T Consensus 288 g~~~~~~~~~~~~~~~~e~p~~a~vfKi~--------~d~~~g~l~~~RvysGtl~~G~~v~n~~~~------------- 346 (697)
T COG0480 288 GDLDDEIEKAVLRKASDEGPLSALVFKIM--------TDPFVGKLTFVRVYSGTLKSGSEVLNSTKG------------- 346 (697)
T ss_pred ccCCccccchhcccCCCCCceEEEEEEeE--------ecCCCCeEEEEEEeccEEcCCCEEEeCCCC-------------
Confidence 23678888886655 356689999999999999999988754321
Q ss_pred ceeeeEEeeec----ccceeEEecCceEEE
Q 039945 379 IYSRIVSLFAE----QNELQFAVPGGLIGV 404 (531)
Q Consensus 379 ~~~~V~si~~~----~~~v~~a~aG~~v~i 404 (531)
...+|..|... +.+++++.||+++++
T Consensus 347 ~~erv~~l~~~~~~~~~~v~~~~AG~I~a~ 376 (697)
T COG0480 347 KKERVGRLLLMHGNEREEVDEVPAGDIVAL 376 (697)
T ss_pred ccEEEEEEEEccCCceeecccccCccEEEE
Confidence 13555555443 357999999999997
No 58
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.8e-26 Score=229.42 Aligned_cols=255 Identities=18% Similarity=0.223 Sum_probs=190.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH---------CC----------CcCccccceecceEeeecceeeeeecccCCCCCCCc
Q 039945 104 ATINIGTIGHVAHGKSTVVKAIS---------GV----------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPM 164 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~---------g~----------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~ 164 (531)
..++.|||-|||+|||||...|+ |. .+|.++-|++|||++..+.-
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVM---------------- 74 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVM---------------- 74 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEE----------------
Confidence 34788999999999999999986 11 24567889999998866531
Q ss_pred cccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH
Q 039945 165 CYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI 244 (531)
Q Consensus 165 ~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~ 244 (531)
.+++.| ..++|+|||||+||...+.+.+..+|.+++||||..| +++||...++.++.
T Consensus 75 -------------qF~Y~~---------~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKG-iE~qT~KLfeVcrl 131 (528)
T COG4108 75 -------------QFDYAD---------CLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG-IEPQTLKLFEVCRL 131 (528)
T ss_pred -------------EeccCC---------eEEeccCCCCccccchhHHHHHHhhheeeEEEecccC-ccHHHHHHHHHHhh
Confidence 112222 7999999999999999999999999999999999999 89999999999998
Q ss_pred cCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcc---------------------------------------------
Q 039945 245 MRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGT--------------------------------------------- 279 (531)
Q Consensus 245 ~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~--------------------------------------------- 279 (531)
.++| ++-++||+|....+-+ +.++++.+.|+-.
T Consensus 132 R~iP-I~TFiNKlDR~~rdP~-ELLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~ 209 (528)
T COG4108 132 RDIP-IFTFINKLDREGRDPL-ELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGL 209 (528)
T ss_pred cCCc-eEEEeeccccccCChH-HHHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCC
Confidence 8865 9999999998754322 2344444433200
Q ss_pred -------------------------------------cCCCCCEEEecccCccchHHHHHHHHccCCCCCC---------
Q 039945 280 -------------------------------------VADGAPVVPISAQLKYNIDVVCEYIVKKIPIPER--------- 313 (531)
Q Consensus 280 -------------------------------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~--------- 313 (531)
.....|+++-||+.+-|++.+++.+.++.|+|..
T Consensus 210 ~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~ 289 (528)
T COG4108 210 DNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVE 289 (528)
T ss_pred CChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCccc
Confidence 0345699999999999999999999999988742
Q ss_pred CCCCCCEEEEEEeeeecCCCCcccC-CCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccc
Q 039945 314 NFIDPPNMIVIRSFDVNKPGFEVDD-IRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNE 392 (531)
Q Consensus 314 ~~~~~~~~~i~~~~~v~~~~~~~~~-~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~ 392 (531)
..+..|...|++... ++|+ ++-++++.||.||.+..|+++...-++... + ......-+-..++.
T Consensus 290 p~e~kfsGFVFKIQA------NMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~----~-----ls~~~~f~A~dRe~ 354 (528)
T COG4108 290 PTEDKFSGFVFKIQA------NMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDV----K-----LSDALTFMAQDRET 354 (528)
T ss_pred CCCCccceEEEEEEc------CCCcccccceeEEEeccccccCCceeeeeecCCce----E-----ecchHhhhhhhhhh
Confidence 223335566644332 2333 578999999999999999999976553211 0 01111222335678
Q ss_pred eeEEecCceEEE----eeecCccccc
Q 039945 393 LQFAVPGGLIGV----GTTMDPTLTR 414 (531)
Q Consensus 393 v~~a~aG~~v~i----~l~~~~~~~~ 414 (531)
++.|.|||++|+ .+++||+++.
T Consensus 355 ve~A~aGDIIGl~nhG~~~IGDT~t~ 380 (528)
T COG4108 355 VEEAYAGDIIGLHNHGTIQIGDTFTE 380 (528)
T ss_pred hhhccCCCeEeccCCCceeecceeec
Confidence 999999999999 5667777765
No 59
>PRK12740 elongation factor G; Reviewed
Probab=99.94 E-value=6.7e-26 Score=252.28 Aligned_cols=250 Identities=22% Similarity=0.304 Sum_probs=185.5
Q ss_pred EcCCCCcHHHHHHHHH---CC------------CcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCC
Q 039945 111 IGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKED 175 (531)
Q Consensus 111 iG~~~~GKSTLi~~L~---g~------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 175 (531)
+||+|+|||||+++|+ |. ..+..+.|++||+|+......+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~------------------------- 55 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTC------------------------- 55 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEE-------------------------
Confidence 6999999999999995 31 1234567888999987765332
Q ss_pred CCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEe
Q 039945 176 NPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQN 255 (531)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviN 255 (531)
.|. +..++|||||||.+|...+..++..+|++++|+|++.+ ...++..++..+...+.+ +++|+|
T Consensus 56 ----~~~---------~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~-~~~~~~~~~~~~~~~~~p-~iiv~N 120 (668)
T PRK12740 56 ----EWK---------GHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGG-VEPQTETVWRQAEKYGVP-RIIFVN 120 (668)
T ss_pred ----EEC---------CEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCC-cCHHHHHHHHHHHHcCCC-EEEEEE
Confidence 122 27899999999999999999999999999999999987 688888888888877754 788999
Q ss_pred ccCCccHHHHHHHHHHHHHHHhc---------------------------------------------------------
Q 039945 256 KVDLIQENVAINQHEAIMKFIQG--------------------------------------------------------- 278 (531)
Q Consensus 256 K~Dl~~~~~~~~~~~~i~~~l~~--------------------------------------------------------- 278 (531)
|+|+.... .....+++.+.+..
T Consensus 121 K~D~~~~~-~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e 199 (668)
T PRK12740 121 KMDRAGAD-FFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLE 199 (668)
T ss_pred CCCCCCCC-HHHHHHHHHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHH
Confidence 99987422 11222222221110
Q ss_pred --------------------------------ccCCCCCEEEecccCccchHHHHHHHHccCCCCCC-------------
Q 039945 279 --------------------------------TVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPER------------- 313 (531)
Q Consensus 279 --------------------------------~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~------------- 313 (531)
.....+|+++.||++|.|++.|+++|..++|.|..
T Consensus 200 ~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~ 279 (668)
T PRK12740 200 ALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGA 279 (668)
T ss_pred HHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCcccc
Confidence 00124578999999999999999999999998842
Q ss_pred ----CCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeee-
Q 039945 314 ----NFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFA- 388 (531)
Q Consensus 314 ----~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~- 388 (531)
+.+.++.+.|++++. ++++|.++++||.+|+|++||.|++.+.+. .+ ...+|..++.
T Consensus 280 ~~~~~~~~~l~a~v~k~~~--------~~~~G~i~~~RV~sG~L~~g~~v~~~~~~~------~~----~i~~l~~l~g~ 341 (668)
T PRK12740 280 ELAPDPDGPLVALVFKTMD--------DPFVGKLSLVRVYSGTLKKGDTLYNSGTGK------KE----RVGRLYRMHGK 341 (668)
T ss_pred ccccCCCCCeEEEEEEeee--------cCCCCcEEEEEEeeeEEcCCCEEEeCCCCC------cE----EecceeeecCC
Confidence 335678888877763 445899999999999999999999887531 11 1245666654
Q ss_pred cccceeEEecCceEEEeeecCccccccccccceeeccC
Q 039945 389 EQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEV 426 (531)
Q Consensus 389 ~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~ 426 (531)
+..++++|.|||++++. ++ ..+..|++|+..
T Consensus 342 ~~~~v~~~~aGdI~~i~-----gl--~~~~~Gdtl~~~ 372 (668)
T PRK12740 342 QREEVDEAVAGDIVAVA-----KL--KDAATGDTLCDK 372 (668)
T ss_pred CccccCccCCCCEEEEe-----cc--CccCCCCEEeCC
Confidence 45789999999999985 22 246678888643
No 60
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.94 E-value=1.1e-25 Score=250.80 Aligned_cols=261 Identities=21% Similarity=0.280 Sum_probs=182.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC-------------CcCccccceecceEeeecceeeeeecccCCCCCCCcccccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAY 169 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~ 169 (531)
...+||+++||+|+|||||+++|+.. ..+..++|++||+|++..+..+..
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~----------------- 79 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVH----------------- 79 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEE-----------------
Confidence 34589999999999999999999731 123446788899998776532210
Q ss_pred CCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce
Q 039945 170 GSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH 249 (531)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~ 249 (531)
.+++. ...++|||||||.+|...+..++..+|++|+|+|+..+ ...++.+++..+...+.+
T Consensus 80 --------~~~~~---------~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g-~~~~t~~~~~~~~~~~~p- 140 (720)
T TIGR00490 80 --------EYEGN---------EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEG-VMPQTETVLRQALKENVK- 140 (720)
T ss_pred --------eecCC---------ceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCC-CCccHHHHHHHHHHcCCC-
Confidence 01122 27899999999999999999999999999999999998 788999998887777766
Q ss_pred EEEEEeccCCccH------HHHH----HHHHHHHHHHhcccC-----------CCCCEEEecccCccc------------
Q 039945 250 IIILQNKVDLIQE------NVAI----NQHEAIMKFIQGTVA-----------DGAPVVPISAQLKYN------------ 296 (531)
Q Consensus 250 iIvviNK~Dl~~~------~~~~----~~~~~i~~~l~~~~~-----------~~~~ii~iSa~~g~g------------ 296 (531)
.++++||+|+... +.+. .....+...+..... ...++.+.|++.+++
T Consensus 141 ~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~ 220 (720)
T TIGR00490 141 PVLFINKVDRLINELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIG 220 (720)
T ss_pred EEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCC
Confidence 5799999998632 1111 222222233221100 011223334444421
Q ss_pred ----------------------hHHHHHHHHccCCCCCC-------------------------CCCCCCEEEEEEeeee
Q 039945 297 ----------------------IDVVCEYIVKKIPIPER-------------------------NFIDPPNMIVIRSFDV 329 (531)
Q Consensus 297 ----------------------i~~L~~~L~~~l~~~~~-------------------------~~~~~~~~~i~~~~~v 329 (531)
++.|+++|.+++|.|.. +.+.|+.+.|++++
T Consensus 221 ~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~-- 298 (720)
T TIGR00490 221 FKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIV-- 298 (720)
T ss_pred HHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEE--
Confidence 35678888888988841 12456788887665
Q ss_pred cCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeec----ccceeEEecCceEEEe
Q 039945 330 NKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAE----QNELQFAVPGGLIGVG 405 (531)
Q Consensus 330 ~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~----~~~v~~a~aG~~v~i~ 405 (531)
.+++.|.+++|||.+|+|++||.|++.+.+ ...+|..|+.. ..++++|.||++|++.
T Consensus 299 ------~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~-------------~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~ 359 (720)
T TIGR00490 299 ------VDKHAGEVAVGRLYSGTIRPGMEVYIVDRK-------------AKARIQQVGVYMGPERVEVDEIPAGNIVAVI 359 (720)
T ss_pred ------ecCCCcEEEEEEEEeCEEcCCCEEEEcCCC-------------CeeEeeEEEEeccCCccCccEECCCCEEEEE
Confidence 244589999999999999999999988864 23567777654 3589999999999884
Q ss_pred eecCccccccccccceeeccCC
Q 039945 406 TTMDPTLTRADRLVGQVLGEVG 427 (531)
Q Consensus 406 l~~~~~~~~~~i~~G~vl~~~~ 427 (531)
++ +++.+|++|+.++
T Consensus 360 -----gl--~~~~~GdtL~~~~ 374 (720)
T TIGR00490 360 -----GL--KDAVAGETICTTV 374 (720)
T ss_pred -----Cc--cccccCceeecCC
Confidence 22 2455788887554
No 61
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.93 E-value=4.2e-25 Score=212.42 Aligned_cols=188 Identities=21% Similarity=0.350 Sum_probs=140.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHC-C----------CcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG-V----------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKED 175 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g-~----------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 175 (531)
+|+++|+.++|||||+++|+. . ..+++.+|.++|+|+.+.... +.+++ ..++.+|....+....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~---~g~~~--~~~~~~~~~~~~~~~~ 75 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEI---LGFDS--DGEVVNYPDNHLSESD 75 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhh---cccCC--CCceecCCCCcccccc
Confidence 479999999999999999983 1 234788999999998654422 11111 0111222211111111
Q ss_pred CCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhcc--ccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEE
Q 039945 176 NPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAA--IMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIIL 253 (531)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~--~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvv 253 (531)
.+.++. ..+.++|+|||||++|.+.+.+++. .+|++++|+|+..+ ...++.+++.++...++| +++|
T Consensus 76 ~~~~~~---------~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g-~~~~d~~~l~~l~~~~ip-~ivv 144 (224)
T cd04165 76 IEICEK---------SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG-IIGMTKEHLGLALALNIP-VFVV 144 (224)
T ss_pred ceeeee---------CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCC-EEEE
Confidence 122222 2378999999999999999999985 79999999999998 789999999999999975 8999
Q ss_pred EeccCCccHHHHHHHHHHHHHHHhcc-----------------------cCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 254 QNKVDLIQENVAINQHEAIMKFIQGT-----------------------VADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 254 iNK~Dl~~~~~~~~~~~~i~~~l~~~-----------------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+||+|+.+........+++.++++.. .....|+|++||.+|+|+++|+++|. .+|.
T Consensus 145 vNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~-~lp~ 223 (224)
T cd04165 145 VTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN-LLPL 223 (224)
T ss_pred EECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH-hcCC
Confidence 99999988777788888888877621 12356999999999999999999998 6775
Q ss_pred C
Q 039945 311 P 311 (531)
Q Consensus 311 ~ 311 (531)
+
T Consensus 224 ~ 224 (224)
T cd04165 224 R 224 (224)
T ss_pred C
Confidence 3
No 62
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.92 E-value=8.6e-24 Score=237.87 Aligned_cols=244 Identities=17% Similarity=0.206 Sum_probs=175.5
Q ss_pred HHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEE
Q 039945 118 KSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSF 197 (531)
Q Consensus 118 KSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~l 197 (531)
||||+.+|.+... ..+..+|||++++++.+..-... ..|.. ... .......+ ..++|
T Consensus 474 KTtLLD~iR~t~v---~~~EaGGITQ~IGa~~v~~~~~~-~~~~~---~~~-----~~~~~~~~-----------p~i~f 530 (1049)
T PRK14845 474 NTTLLDKIRKTRV---AKKEAGGITQHIGATEIPIDVIK-KICGP---LLK-----LLKAEIKI-----------PGLLF 530 (1049)
T ss_pred cccHHHHHhCCCc---ccccCCCceeccceEEEEecccc-ccccc---ccc-----cccccCCc-----------CcEEE
Confidence 9999999998865 45668999999998765431100 00000 000 00000111 35899
Q ss_pred EecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc-HH-------------
Q 039945 198 VDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ-EN------------- 263 (531)
Q Consensus 198 iDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~-~~------------- 263 (531)
||||||++|...+.+++..+|++++|+|++++ ..+|+.+++..+...+. |+|+|+||+|+.. +.
T Consensus 531 iDTPGhe~F~~lr~~g~~~aDivlLVVDa~~G-i~~qT~e~I~~lk~~~i-PiIVViNKiDL~~~~~~~~~~~~~~~~~~ 608 (1049)
T PRK14845 531 IDTPGHEAFTSLRKRGGSLADLAVLVVDINEG-FKPQTIEAINILRQYKT-PFVVAANKIDLIPGWNISEDEPFLLNFNE 608 (1049)
T ss_pred EECCCcHHHHHHHHhhcccCCEEEEEEECccc-CCHhHHHHHHHHHHcCC-CEEEEEECCCCccccccccchhhhhhhhh
Confidence 99999999988888888999999999999988 79999999999988875 5999999999963 21
Q ss_pred HHHHHHHHHHH-------HHhcc------------cCCCCCEEEecccCccchHHHHHHHHccCC-----CCCCCCCCCC
Q 039945 264 VAINQHEAIMK-------FIQGT------------VADGAPVVPISAQLKYNIDVVCEYIVKKIP-----IPERNFIDPP 319 (531)
Q Consensus 264 ~~~~~~~~i~~-------~l~~~------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~-----~~~~~~~~~~ 319 (531)
+.+...+++.. .|.+. ....++++|+||++|+||++|+++|....+ ....+.+.++
T Consensus 609 q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~ 688 (1049)
T PRK14845 609 QDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYA 688 (1049)
T ss_pred hHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCce
Confidence 01122222221 12221 134679999999999999999999864322 1234457889
Q ss_pred EEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeec----------
Q 039945 320 NMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAE---------- 389 (531)
Q Consensus 320 ~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~---------- 389 (531)
+++|+++|.+.+ .|+|++|.|.+|+|++||.|+++|.. .|..++|++|...
T Consensus 689 ~g~VlEv~~~kG--------~G~vvt~iv~~G~Lk~GD~iv~g~~~-----------~~i~~kVRaLl~p~pl~e~r~~~ 749 (1049)
T PRK14845 689 KGTILEVKEEKG--------LGTTIDAIIYDGTLRRGDTIVVGGPD-----------DVIVTKVRALLKPKPLDEIRDPR 749 (1049)
T ss_pred EEEEEEEEEecC--------ceeEEEEEEEcCEEecCCEEEEccCC-----------CcceEEEEEecCccccccccccc
Confidence 999999998765 89999999999999999999999963 2457899999742
Q ss_pred --ccceeEEecCceEEEe
Q 039945 390 --QNELQFAVPGGLIGVG 405 (531)
Q Consensus 390 --~~~v~~a~aG~~v~i~ 405 (531)
...+++|.|+.-|.+.
T Consensus 750 ~~~~~~~~~~~a~~vki~ 767 (1049)
T PRK14845 750 DKFDPVDEVTAAAGVKIA 767 (1049)
T ss_pred ccccccccccCCCceEEe
Confidence 2356777777766663
No 63
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=5.3e-24 Score=194.60 Aligned_cols=162 Identities=38% Similarity=0.646 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|++|+|||||+++|++...+.+..+..+++|++..+....+ .+
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------------------~~-- 49 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDL-----------------------------PS-- 49 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEe-----------------------------cC--
Confidence 47899999999999999999986555556666677787765532211 00
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVA 265 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~ 265 (531)
...+.+|||||+++|...+...+..+|++++|+|++.+ ...++.+.+..++..+.+|+++++||+|+......
T Consensus 50 ------~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~-~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~ 122 (164)
T cd04171 50 ------GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEG-IMPQTREHLEILELLGIKRGLVVLTKADLVDEDWL 122 (164)
T ss_pred ------CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCC-ccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHH
Confidence 15799999999999998888889999999999999876 56777777777777777689999999999876544
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHH
Q 039945 266 INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIV 305 (531)
Q Consensus 266 ~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~ 305 (531)
....+++.+.++.......+++++||++|+|+++|++.|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 123 ELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred HHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHh
Confidence 4455666666654322467999999999999999999986
No 64
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.92 E-value=2.4e-24 Score=205.72 Aligned_cols=153 Identities=27% Similarity=0.381 Sum_probs=119.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC----------------------------cCccccceecceEeeecceeeeeecccCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQ----------------------------TVRFKNELERNITIKLGYANAKIYKCEDD 158 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~----------------------------~~~~~~e~~~git~~~~~~~~~~~~~~~~ 158 (531)
||+++||+|+|||||+++|++.. .+..+.|+++|+|++.....
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--------- 71 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRY--------- 71 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeE---------
Confidence 58999999999999999997321 12345677788887765422
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHH
Q 039945 159 RCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEH 238 (531)
Q Consensus 159 ~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~ 238 (531)
+++.+ ..+.|+|||||++|...+..++..+|++|+|+|++.+ ...++.++
T Consensus 72 --------------------~~~~~---------~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~-~~~~~~~~ 121 (208)
T cd04166 72 --------------------FSTPK---------RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKG-VLEQTRRH 121 (208)
T ss_pred --------------------EecCC---------ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC-ccHhHHHH
Confidence 12222 6899999999999999999999999999999999987 67788888
Q ss_pred HHHHHHcCCceEEEEEeccCCccH--HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchH
Q 039945 239 LAAVEIMRLQHIIILQNKVDLIQE--NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNID 298 (531)
Q Consensus 239 l~~~~~~~~~~iIvviNK~Dl~~~--~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~ 298 (531)
+.++...+.+++|+|+||+|+... ........++.++++.++....+++++||++|.|++
T Consensus 122 ~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~ 183 (208)
T cd04166 122 SYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVV 183 (208)
T ss_pred HHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCc
Confidence 888888887778889999999753 334455566666665544445679999999999985
No 65
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.92 E-value=3.9e-24 Score=201.73 Aligned_cols=181 Identities=30% Similarity=0.437 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC----CcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV----QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~----~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
+||+++|++|+|||||+++|++. ..++..+|.++|+|++..+..+.+.... +. ...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~---~~---------------~~~-- 60 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPK---HL---------------REL-- 60 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccc---cc---------------ccc--
Confidence 48999999999999999999963 2345567888999998877654321100 00 000
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
.........++|||||||.+|.+.+..++..+|++++|+|++.+ ...++.+++.++...+. |+++++||+|+..
T Consensus 61 ----~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~-~~~~~~~~~~~~~~~~~-~~iiv~NK~Dl~~ 134 (192)
T cd01889 61 ----INPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKG-IQTQTAECLVIGEILCK-KLIVVLNKIDLIP 134 (192)
T ss_pred ----ccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-ccHHHHHHHHHHHHcCC-CEEEEEECcccCC
Confidence 00001126899999999999999998888999999999999987 66777777776666665 6899999999986
Q ss_pred HHHHHHHHHHHHHHH----hcccCCCCCEEEecccCccchHHHHHHHHccCCCCC
Q 039945 262 ENVAINQHEAIMKFI----QGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPE 312 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l----~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~ 312 (531)
....+...+++.+.+ ........+++++||++|+|+++|+++|.+.++.|.
T Consensus 135 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 135 EEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccccc
Confidence 554444445554433 222234679999999999999999999999988764
No 66
>PTZ00416 elongation factor 2; Provisional
Probab=99.91 E-value=4.6e-23 Score=232.55 Aligned_cols=144 Identities=26% Similarity=0.258 Sum_probs=109.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC-------------CcCccccceecceEeeecceeeeeecccCCCCCCCcccccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAY 169 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~ 169 (531)
...+||+++||+|||||||+++|+.. ..+..++|++||+|++.+...+.....
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~-------------- 82 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHD-------------- 82 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecc--------------
Confidence 44579999999999999999999842 145668999999999876543211000
Q ss_pred CCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce
Q 039945 170 GSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH 249 (531)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~ 249 (531)
....+ ......++|+|||||.+|..++..++..+|++|+|||+.+| +..|+..++..+...++ |
T Consensus 83 ---------~~~~~-----~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g-~~~~t~~~~~~~~~~~~-p 146 (836)
T PTZ00416 83 ---------LEDGD-----DKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEG-VCVQTETVLRQALQERI-R 146 (836)
T ss_pred ---------ccccc-----CCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCC-cCccHHHHHHHHHHcCC-C
Confidence 00000 00126799999999999999999999999999999999998 89999999998888885 5
Q ss_pred EEEEEeccCCc----c------HHHHHHHHHHHHHHH
Q 039945 250 IIILQNKVDLI----Q------ENVAINQHEAIMKFI 276 (531)
Q Consensus 250 iIvviNK~Dl~----~------~~~~~~~~~~i~~~l 276 (531)
+|+++||||+. . ...+...+++++..+
T Consensus 147 ~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii~~in~~l 183 (836)
T PTZ00416 147 PVLFINKVDRAILELQLDPEEIYQNFVKTIENVNVII 183 (836)
T ss_pred EEEEEEChhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999997 2 234555666666544
No 67
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.91 E-value=3.4e-23 Score=234.10 Aligned_cols=147 Identities=25% Similarity=0.234 Sum_probs=108.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC-------------cCccccceecceEeeecceeeeeecccCCCCCCCcccccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ-------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAY 169 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~-------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~ 169 (531)
.+.+||+|+||+|||||||+++|+... .+..++|++||+|++.+...+..-.. +..-+++
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~-------~~~~~~~ 89 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMT-------DESLKDF 89 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecc-------ccccccc
Confidence 456899999999999999999997321 45668999999999876543321000 0000000
Q ss_pred CCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce
Q 039945 170 GSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH 249 (531)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~ 249 (531)
. .........++|||||||.+|..++.++++.+|++|+||||.+| +..||+.++..+...+++
T Consensus 90 ------------~---~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~G-v~~~t~~~~~~~~~~~~p- 152 (843)
T PLN00116 90 ------------K---GERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR- 152 (843)
T ss_pred ------------c---cccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCC-CcccHHHHHHHHHHCCCC-
Confidence 0 00011126899999999999999999999999999999999998 899999999999888865
Q ss_pred EEEEEeccCCcc------H----HHHHHHHHHHH
Q 039945 250 IIILQNKVDLIQ------E----NVAINQHEAIM 273 (531)
Q Consensus 250 iIvviNK~Dl~~------~----~~~~~~~~~i~ 273 (531)
+|+++||||+.. . ..+...+++++
T Consensus 153 ~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in 186 (843)
T PLN00116 153 PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENAN 186 (843)
T ss_pred EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHH
Confidence 799999999972 2 34455566665
No 68
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.91 E-value=6.2e-24 Score=204.42 Aligned_cols=162 Identities=28% Similarity=0.388 Sum_probs=126.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH---CC-------------------------CcCccccceecceEeeecceeeeeecccCC
Q 039945 107 NIGTIGHVAHGKSTVVKAIS---GV-------------------------QTVRFKNELERNITIKLGYANAKIYKCEDD 158 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~---g~-------------------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~ 158 (531)
||+++||+++|||||+++|+ |. ..+....|++||+|++.....+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~-------- 72 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKF-------- 72 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEE--------
Confidence 68999999999999999996 21 1234567888888887765322
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCC------CCC
Q 039945 159 RCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANES------CPQ 232 (531)
Q Consensus 159 ~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~------~~~ 232 (531)
.+. ...++|||||||.+|...+..++..+|++|+|||++.+ ...
T Consensus 73 ---------------------~~~---------~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~ 122 (219)
T cd01883 73 ---------------------ETE---------KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKG 122 (219)
T ss_pred ---------------------eeC---------CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccc
Confidence 122 27899999999999999999999999999999999973 256
Q ss_pred cchHHHHHHHHHcCCceEEEEEeccCCcc----HHHHHHHHHHHHHHHhcccC--CCCCEEEecccCccchH--------
Q 039945 233 PQTSEHLAAVEIMRLQHIIILQNKVDLIQ----ENVAINQHEAIMKFIQGTVA--DGAPVVPISAQLKYNID-------- 298 (531)
Q Consensus 233 ~qt~e~l~~~~~~~~~~iIvviNK~Dl~~----~~~~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~gi~-------- 298 (531)
.++.+++..+..++.+|+|+|+||+|+.. ........+++.++++.... ...+++++||++|+|++
T Consensus 123 ~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~~~~w 202 (219)
T cd01883 123 GQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSENMPW 202 (219)
T ss_pred cchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCCCCCC
Confidence 78888888888888888999999999983 33455666677666665432 35789999999999985
Q ss_pred ----HHHHHHHc
Q 039945 299 ----VVCEYIVK 306 (531)
Q Consensus 299 ----~L~~~L~~ 306 (531)
.|+++|..
T Consensus 203 ~~g~~l~~~l~~ 214 (219)
T cd01883 203 YKGPTLLEALDS 214 (219)
T ss_pred ccCCcHHHHHhC
Confidence 57777763
No 69
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.90 E-value=1e-24 Score=221.63 Aligned_cols=155 Identities=21% Similarity=0.242 Sum_probs=121.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
++.++++|+|.||+|||||+|+|++. ++.| +++.||||||+ .+..+.+.
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~---------d~AI-----------------VTdI~GTTRDv-----iee~i~i~ 263 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGR---------DRAI-----------------VTDIAGTTRDV-----IEEDINLN 263 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcC---------CceE-----------------ecCCCCCccce-----EEEEEEEC
Confidence 67799999999999999999999997 4666 55679999996 66777888
Q ss_pred CCccccccceeeEEEEecCChhh--------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEE
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDI--------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQ 254 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~--------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvvi 254 (531)
| .++.++||+|.++ -+......+.+||++|+|+|++.+ ...+....+. ..-..+|+++|+
T Consensus 264 G---------~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~-~~~~d~~~~~--~~~~~~~~i~v~ 331 (454)
T COG0486 264 G---------IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP-LDKEDLALIE--LLPKKKPIIVVL 331 (454)
T ss_pred C---------EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-CchhhHHHHH--hcccCCCEEEEE
Confidence 7 8999999999653 356678888999999999999986 3444444444 122336799999
Q ss_pred eccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 255 NKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 255 NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
||+|+..+..... + +. ....+++.+||++|+|++.|.++|.+.+..
T Consensus 332 NK~DL~~~~~~~~----~-~~-----~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 332 NKADLVSKIELES----E-KL-----ANGDAIISISAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred echhcccccccch----h-hc-----cCCCceEEEEecCccCHHHHHHHHHHHHhh
Confidence 9999987543221 1 11 234579999999999999999999976653
No 70
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=2.8e-22 Score=193.16 Aligned_cols=158 Identities=23% Similarity=0.303 Sum_probs=121.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
--|+|+|+||+|||||+|+|+|... .| +++.|.|||.-..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~Ki---------sI-----------------vS~k~QTTR~~I~-------------- 46 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKI---------SI-----------------VSPKPQTTRNRIR-------------- 46 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCce---------Ee-----------------ecCCcchhhhhee--------------
Confidence 4689999999999999999999742 11 5678999998533
Q ss_pred cccccceeeEEEEecCCh-h-------hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEecc
Q 039945 186 NCRMKLLRHVSFVDCPGH-D-------ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~-~-------~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~ 257 (531)
+.+...+.++.|+||||. + ...+....++..+|+++||+|++++ ..+.+...++.++... .|+|+++||+
T Consensus 47 GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~-~~~~d~~il~~lk~~~-~pvil~iNKI 124 (298)
T COG1159 47 GIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG-WGPGDEFILEQLKKTK-TPVILVVNKI 124 (298)
T ss_pred EEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc-CCccHHHHHHHHhhcC-CCeEEEEEcc
Confidence 333444589999999993 2 2345667788999999999999987 5666666777777644 4689999999
Q ss_pred CCccHHH-HHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 258 DLIQENV-AINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 258 Dl~~~~~-~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
|....+. +....+.+... .....++|+||++|.|++.|++.|..++|.
T Consensus 125 D~~~~~~~l~~~~~~~~~~-----~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 125 DKVKPKTVLLKLIAFLKKL-----LPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ccCCcHHHHHHHHHHHHhh-----CCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 9987665 33333333332 345589999999999999999999999985
No 71
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.88 E-value=5.2e-22 Score=184.64 Aligned_cols=167 Identities=27% Similarity=0.337 Sum_probs=116.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC------------cCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGK 173 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 173 (531)
+||+++|++++|||||+++|++.. .+....+..+|++.........
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~---------------------- 58 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLN---------------------- 58 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEE----------------------
Confidence 479999999999999999998632 1122234455655543221110
Q ss_pred CCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEE
Q 039945 174 EDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIIL 253 (531)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvv 253 (531)
+.+ .......++||||||+.+|...+..++..+|++|+|+|++.+ ...++.+++..+...+. |+++|
T Consensus 59 -------~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~-~~~~~~~~~~~~~~~~~-~iiiv 125 (179)
T cd01890 59 -------YKA----KDGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQG-VEAQTLANFYLALENNL-EIIPV 125 (179)
T ss_pred -------Eec----CCCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCC-ccHhhHHHHHHHHHcCC-CEEEE
Confidence 000 000126789999999999999999999999999999999886 56666666655555564 58999
Q ss_pred EeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 254 QNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 254 iNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
+||+|+.+.. .....+++.+.+. ....+++++||++|+|+++|+++|.+.+|.|
T Consensus 126 ~NK~Dl~~~~-~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 126 INKIDLPSAD-PERVKQQIEDVLG---LDPSEAILVSAKTGLGVEDLLEAIVERIPPP 179 (179)
T ss_pred EECCCCCcCC-HHHHHHHHHHHhC---CCcccEEEeeccCCCCHHHHHHHHHhhCCCC
Confidence 9999986432 1223334444331 2234699999999999999999999888765
No 72
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.88 E-value=3.9e-22 Score=196.96 Aligned_cols=115 Identities=27% Similarity=0.369 Sum_probs=96.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH---CC------------CcCccccceecceEeeecceeeeeecccCCCCCCCccccccCC
Q 039945 107 NIGTIGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGS 171 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~---g~------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 171 (531)
||+++||+|+|||||+++|+ |. ..+..++|++||+|++.....+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~--------------------- 59 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTC--------------------- 59 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEE---------------------
Confidence 68999999999999999996 32 1234568889999988765432
Q ss_pred CCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEE
Q 039945 172 GKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHII 251 (531)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iI 251 (531)
+|.+ ..++|||||||.+|...+.++++.+|++|+|||+..+ ...++..++..+...+.| ++
T Consensus 60 --------~~~~---------~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g-~~~~t~~~~~~~~~~~~p-~i 120 (270)
T cd01886 60 --------FWKD---------HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAG-VEPQTETVWRQADRYNVP-RI 120 (270)
T ss_pred --------EECC---------EEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCC-CCHHHHHHHHHHHHcCCC-EE
Confidence 2222 7899999999999999999999999999999999998 789999999988888865 78
Q ss_pred EEEeccCCcc
Q 039945 252 ILQNKVDLIQ 261 (531)
Q Consensus 252 vviNK~Dl~~ 261 (531)
+++||+|+.+
T Consensus 121 vviNK~D~~~ 130 (270)
T cd01886 121 AFVNKMDRTG 130 (270)
T ss_pred EEEECCCCCC
Confidence 9999999874
No 73
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.88 E-value=7.6e-22 Score=189.03 Aligned_cols=176 Identities=26% Similarity=0.306 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC-------------cCccccceecceEeeecceeeeeecccCCCCCCCccccccCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ-------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSG 172 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~-------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 172 (531)
+||+++||+++|||||+++|+... .+....|++||+|++.+...+.. ....
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~-~~~~--------------- 64 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYF-EYEE--------------- 64 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEE-ecCc---------------
Confidence 489999999999999999997321 24457899999998876433221 1000
Q ss_pred CCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEE
Q 039945 173 KEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIII 252 (531)
Q Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIv 252 (531)
.....+ ....++|||||||.+|...+..+++.+|++++|+|+.++ ...++++++..+...++ |+|+
T Consensus 65 -----~~~~~~-------~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g-~~~~t~~~l~~~~~~~~-p~il 130 (222)
T cd01885 65 -----EDKADG-------NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEG-VCVQTETVLRQALKERV-KPVL 130 (222)
T ss_pred -----ccccCC-------CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCC-CCHHHHHHHHHHHHcCC-CEEE
Confidence 000000 126899999999999999999999999999999999998 78999999988877786 4899
Q ss_pred EEeccCCc------cHH----HHHHHHHHHHHHHhcccCC-----------CCC----EEEecccCccch--------HH
Q 039945 253 LQNKVDLI------QEN----VAINQHEAIMKFIQGTVAD-----------GAP----VVPISAQLKYNI--------DV 299 (531)
Q Consensus 253 viNK~Dl~------~~~----~~~~~~~~i~~~l~~~~~~-----------~~~----ii~iSa~~g~gi--------~~ 299 (531)
|+||+|+. +++ .+.+..+++..+++.+... ..| +++.||+.|+.+ ..
T Consensus 131 viNKiD~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~~ 210 (222)
T cd01885 131 VINKIDRLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYA 210 (222)
T ss_pred EEECCCcchhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchHH
Confidence 99999985 322 2334555555555443111 124 888999999864 57
Q ss_pred HHHHHHccCCCC
Q 039945 300 VCEYIVKKIPIP 311 (531)
Q Consensus 300 L~~~L~~~l~~~ 311 (531)
|++.+.+++|.|
T Consensus 211 ~~~~~~~~~~~p 222 (222)
T cd01885 211 VLEMVVKHLPSP 222 (222)
T ss_pred HHHHHHhhCCCC
Confidence 888888888865
No 74
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.4e-22 Score=208.62 Aligned_cols=238 Identities=19% Similarity=0.251 Sum_probs=176.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH---C------------CCcCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 104 ATINIGTIGHVAHGKSTVVKAIS---G------------VQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~---g------------~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
..+||+++.|.++|||||.++++ | ...+.++.|++||||+..+..++
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~------------------ 99 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYF------------------ 99 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeee------------------
Confidence 45899999999999999999986 1 12345678999999998765321
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
.|. +.++++||||||-||.-+..++++-.|.+++|+|+..| .+.|+...+..++..++|
T Consensus 100 -----------~w~---------~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~G-VqsQt~tV~rQ~~ry~vP 158 (721)
T KOG0465|consen 100 -----------TWR---------DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAG-VESQTETVWRQMKRYNVP 158 (721)
T ss_pred -----------eec---------cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccc-eehhhHHHHHHHHhcCCC
Confidence 222 27899999999999999999999999999999999998 899999999999999976
Q ss_pred eEEEEEeccCCccHHHHHHHHHHHHH------------------------------------------------------
Q 039945 249 HIIILQNKVDLIQENVAINQHEAIMK------------------------------------------------------ 274 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~~~~~~~~i~~------------------------------------------------------ 274 (531)
.|.++||||....+.. ..++.+..
T Consensus 159 -~i~FiNKmDRmGa~~~-~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~ 236 (721)
T KOG0465|consen 159 -RICFINKMDRMGASPF-RTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELA 236 (721)
T ss_pred -eEEEEehhhhcCCChH-HHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHH
Confidence 6889999998753221 01111111
Q ss_pred ---------------------HHhc----------------ccCCCCCEEEecccCccchHHHHHHHHccCCCCCCC---
Q 039945 275 ---------------------FIQG----------------TVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERN--- 314 (531)
Q Consensus 275 ---------------------~l~~----------------~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~--- 314 (531)
+|.+ .....+|+++-||+.+.|+.-|++++.+++|.|..-
T Consensus 237 ~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~ 316 (721)
T KOG0465|consen 237 EEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENY 316 (721)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhccc
Confidence 1110 013567999999999999999999999999987320
Q ss_pred -----------------CCC-CCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceee
Q 039945 315 -----------------FID-PPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376 (531)
Q Consensus 315 -----------------~~~-~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~ 376 (531)
.++ ||.... |++. .+++ |...+.||.+|+|+.||.|+=.-+ ++
T Consensus 317 a~~ke~~~~ekv~l~~~~d~~Pfv~LA---FKle-----~g~f-GqLTyvRvYqG~L~kG~~iyN~rt----gK------ 377 (721)
T KOG0465|consen 317 ALNKETNSKEKVTLSPSRDKDPFVALA---FKLE-----EGRF-GQLTYVRVYQGTLSKGDTIYNVRT----GK------ 377 (721)
T ss_pred ccccCCCCccceEeccCCCCCceeeeE---EEee-----ecCc-cceEEEEEeeeeecCCcEEEecCC----Cc------
Confidence 111 444333 4442 2444 889999999999999999993222 21
Q ss_pred ccceeeeEE---eeec-ccceeEEecCceEEE
Q 039945 377 TPIYSRIVS---LFAE-QNELQFAVPGGLIGV 404 (531)
Q Consensus 377 ~~~~~~V~s---i~~~-~~~v~~a~aG~~v~i 404 (531)
+.|+.. +|++ .++|+++.|||++++
T Consensus 378 ---Kvrv~RL~rmHa~~medV~~v~AG~I~al 406 (721)
T KOG0465|consen 378 ---KVRVGRLVRMHANDMEDVNEVLAGDICAL 406 (721)
T ss_pred ---eeEhHHHhHhcccccchhhhhhccceeee
Confidence 344433 3443 368999999999987
No 75
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.1e-22 Score=202.21 Aligned_cols=271 Identities=21% Similarity=0.242 Sum_probs=190.3
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHH-------------CCCcCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAIS-------------GVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~-------------g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
+++.+|+.+|.|+++|||||...|. +..++..+.|++||||+.....++.. +.+.
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~-e~~~----------- 83 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFF-EMSD----------- 83 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehh-hhhH-----------
Confidence 3677899999999999999999996 12344557899999999876543311 1000
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
.+...+.-.+ ......++|||.|||-||..+...+++-.|.+|+|||+-+| +.-||...+..+-.-.++
T Consensus 84 -----~dl~~~k~~~-----d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~G-vCVQTETVLrQA~~ERIk 152 (842)
T KOG0469|consen 84 -----DDLKFIKQEG-----DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG-VCVQTETVLRQAIAERIK 152 (842)
T ss_pred -----hHHHHhcCCC-----CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCc-eEechHHHHHHHHHhhcc
Confidence 0000011111 11137899999999999999999999999999999999998 899999999877777788
Q ss_pred eEEEEEeccCCccH---HHHHHHHHHHHHHHhccc-------C----------CCCCEEEecccCccch-----------
Q 039945 249 HIIILQNKVDLIQE---NVAINQHEAIMKFIQGTV-------A----------DGAPVVPISAQLKYNI----------- 297 (531)
Q Consensus 249 ~iIvviNK~Dl~~~---~~~~~~~~~i~~~l~~~~-------~----------~~~~ii~iSa~~g~gi----------- 297 (531)
| ++++||+|..-- -..++.++.++...++.+ . ..-.+-+.|.++|+++
T Consensus 153 P-vlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~ 231 (842)
T KOG0469|consen 153 P-VLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAK 231 (842)
T ss_pred c-eEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHH
Confidence 7 678999996410 011234444444443321 0 0112445677777654
Q ss_pred --------------------------------------------------------------------------------
Q 039945 298 -------------------------------------------------------------------------------- 297 (531)
Q Consensus 298 -------------------------------------------------------------------------------- 297 (531)
T Consensus 232 KF~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~ 311 (842)
T KOG0469|consen 232 KFGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDE 311 (842)
T ss_pred HhCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceecccc
Confidence
Q ss_pred --------------------HHHHHHHHccCCCCC-------------------------CCCCCCCEEEEEEeeeecCC
Q 039945 298 --------------------DVVCEYIVKKIPIPE-------------------------RNFIDPPNMIVIRSFDVNKP 332 (531)
Q Consensus 298 --------------------~~L~~~L~~~l~~~~-------------------------~~~~~~~~~~i~~~~~v~~~ 332 (531)
+.|++.|.-++|+|. .+.+.|+.|+|.....-+
T Consensus 312 kd~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPts-- 389 (842)
T KOG0469|consen 312 KDLEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTS-- 389 (842)
T ss_pred ccccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccC--
Confidence 457777777777752 367789999997655322
Q ss_pred CCcccCCCce-EEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEE
Q 039945 333 GFEVDDIRGG-VAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGV 404 (531)
Q Consensus 333 ~~~~~~~~G~-v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i 404 (531)
| .|+ +++|||.+|++..|.+++++..+|..+++.....++++..|-.+-++-++++.+.||.++++
T Consensus 390 ----D--kgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGl 456 (842)
T KOG0469|consen 390 ----D--KGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGL 456 (842)
T ss_pred ----C--CceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEE
Confidence 2 454 78999999999999999999777877766554444455566666677789999999999997
No 76
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=4.8e-22 Score=201.72 Aligned_cols=160 Identities=28% Similarity=0.278 Sum_probs=130.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|||+|+||+|||||+|+|+|+ +|.|+ ++.|||||+. ....+++.|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge---------eR~Iv-----------------~~~aGTTRD~-----I~~~~e~~~ 225 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE---------ERVIV-----------------SDIAGTTRDS-----IDIEFERDG 225 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC---------ceEEe-----------------cCCCCccccc-----eeeeEEECC
Confidence 4699999999999999999999997 56653 4669999994 445555655
Q ss_pred CccccccceeeEEEEecCChhh----------H-HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEE
Q 039945 184 FENCRMKLLRHVSFVDCPGHDI----------L-MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIII 252 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~----------~-~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIv 252 (531)
+.+.||||+|.+. | +..+..++..+|++++|+||+++ +..|+...+.++...| +++|+
T Consensus 226 ---------~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~-~~~qD~~ia~~i~~~g-~~~vI 294 (444)
T COG1160 226 ---------RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG-ISEQDLRIAGLIEEAG-RGIVI 294 (444)
T ss_pred ---------eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCC-chHHHHHHHHHHHHcC-CCeEE
Confidence 8999999999643 2 34567788999999999999999 8999999999888888 56899
Q ss_pred EEeccCCccH--HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 253 LQNKVDLIQE--NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 253 viNK~Dl~~~--~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
|+||+|+... ...++..+++...+.. ....|++++||++|.|++.|++++.+.
T Consensus 295 vvNKWDl~~~~~~~~~~~k~~i~~~l~~--l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 295 VVNKWDLVEEDEATMEEFKKKLRRKLPF--LDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred EEEccccCCchhhHHHHHHHHHHHHhcc--ccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 9999999875 4455556666665543 456799999999999999999988753
No 77
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.88 E-value=7.1e-22 Score=191.79 Aligned_cols=164 Identities=28% Similarity=0.321 Sum_probs=126.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC---------------cCccccceecceEeeecceeeeeecccCCCCCCCccccccCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQ---------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGS 171 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~---------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 171 (531)
||+++||+|+|||||+++|+... .+..+.|++||+|+...+..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~--------------------- 59 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF--------------------- 59 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE---------------------
Confidence 68999999999999999997321 123346778888776654322
Q ss_pred CCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEE
Q 039945 172 GKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHII 251 (531)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iI 251 (531)
+|. +..++|||||||.+|...+..+++.+|++++|+|+..+ ...++..++..+...++| ++
T Consensus 60 --------~~~---------~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g-~~~~~~~~~~~~~~~~~P-~i 120 (237)
T cd04168 60 --------QWE---------DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEG-VQAQTRILWRLLRKLNIP-TI 120 (237)
T ss_pred --------EEC---------CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC-CCHHHHHHHHHHHHcCCC-EE
Confidence 122 26899999999999999999999999999999999998 788888999888888865 78
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHHhcc----------------------------------------------------
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFIQGT---------------------------------------------------- 279 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l~~~---------------------------------------------------- 279 (531)
+++||+|+...+ ..+.++++++.+...
T Consensus 121 ivvNK~D~~~a~-~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~ 199 (237)
T cd04168 121 IFVNKIDRAGAD-LEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNE 199 (237)
T ss_pred EEEECccccCCC-HHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHH
Confidence 999999997532 233333443333210
Q ss_pred ------cCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 280 ------VADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 280 ------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
....+|+++.||.++.|++.|+++|.+.+|.|
T Consensus 200 l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 200 LSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred HHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 03456889999999999999999999999875
No 78
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=1.9e-21 Score=197.31 Aligned_cols=153 Identities=21% Similarity=0.262 Sum_probs=121.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
..|||+|+||+|||||+|+|+|.. ..| +.+.||+|||- ....++|.|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r---------~AI-----------------V~D~pGvTRDr-----~y~~~~~~~-- 50 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR---------IAI-----------------VSDTPGVTRDR-----IYGDAEWLG-- 50 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe---------eeE-----------------eecCCCCccCC-----ccceeEEcC--
Confidence 468999999999999999999973 233 34669999994 566777776
Q ss_pred cccccceeeEEEEecCChhh-----H----HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEec
Q 039945 186 NCRMKLLRHVSFVDCPGHDI-----L----MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK 256 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~-----~----~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK 256 (531)
+.|.+|||+|..+ + ..++..++..||++|||||+..| +.+++.+...+++..+ +|+|+|+||
T Consensus 51 -------~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~G-it~~D~~ia~~Lr~~~-kpviLvvNK 121 (444)
T COG1160 51 -------REFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREG-ITPADEEIAKILRRSK-KPVILVVNK 121 (444)
T ss_pred -------ceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHhcC-CCEEEEEEc
Confidence 7899999999642 3 34556678999999999999998 8999999999888554 679999999
Q ss_pred cCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 257 VDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 257 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+|-...+. . ..++.. ...-.+++|||.+|.|+.+|++++.+.+|
T Consensus 122 ~D~~~~e~---~---~~efys---lG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 122 IDNLKAEE---L---AYEFYS---LGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred ccCchhhh---h---HHHHHh---cCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 99763221 1 222221 34557899999999999999999999885
No 79
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=3.5e-21 Score=180.13 Aligned_cols=165 Identities=36% Similarity=0.482 Sum_probs=122.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCc-------------cccceecceEeeecceeeeeecccCCCCCCCccccccCCCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVR-------------FKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGK 173 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~-------------~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 173 (531)
+|+++|.+|+|||||+|+|++..... ...+..+++|++..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 57 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF----------------------- 57 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE-----------------------
Confidence 58999999999999999998653221 112333444443322110
Q ss_pred CCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEE
Q 039945 174 EDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIIL 253 (531)
Q Consensus 174 ~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvv 253 (531)
++ ....+.||||||+.++...+...+..+|++++|+|+..+ ...+..+.+..+...+ .|+++|
T Consensus 58 ------~~---------~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~-~~i~iv 120 (189)
T cd00881 58 ------EW---------PDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEG-VQPQTREHLRIAREGG-LPIIVA 120 (189)
T ss_pred ------ee---------CCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCC-CcHHHHHHHHHHHHCC-CCeEEE
Confidence 11 126899999999999988888889999999999999987 5666677776666645 569999
Q ss_pred EeccCCccHHHHHHHHHHHHHHHhccc-----------CCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 254 QNKVDLIQENVAINQHEAIMKFIQGTV-----------ADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 254 iNK~Dl~~~~~~~~~~~~i~~~l~~~~-----------~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
+||+|+..........+++.+.++... ....+++++||++|.|+++++++|.+.+|.|
T Consensus 121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 121 INKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPPP 189 (189)
T ss_pred EECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCCC
Confidence 999999875555566666776665432 2468999999999999999999999888753
No 80
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=1.1e-20 Score=178.48 Aligned_cols=166 Identities=28% Similarity=0.343 Sum_probs=115.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCC---CcCcc----------ccceecceEeeecceeeeeecccCCCCCCCccccccCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGV---QTVRF----------KNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGS 171 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~---~~~~~----------~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 171 (531)
.++|+++|++|+|||||+++|++. ..... ..|..+|+|......
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~----------------------- 58 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNT----------------------- 58 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhccccccccee-----------------------
Confidence 468999999999999999999852 11110 112233333322110
Q ss_pred CCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEE
Q 039945 172 GKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHII 251 (531)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iI 251 (531)
.+.+ ....+.||||||+++|...+...++.+|++++|+|++.+ ...++..++..+...+++ ++
T Consensus 59 ------~~~~---------~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~~~~p-~i 121 (194)
T cd01891 59 ------AVTY---------KDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALELGLK-PI 121 (194)
T ss_pred ------EEEE---------CCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHHcCCC-EE
Confidence 1111 126899999999999999999999999999999999986 566676666666666754 78
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHHhccc----CCCCCEEEecccCccch----------HHHHHHHHccCCCC
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFIQGTV----ADGAPVVPISAQLKYNI----------DVVCEYIVKKIPIP 311 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l~~~~----~~~~~ii~iSa~~g~gi----------~~L~~~L~~~l~~~ 311 (531)
+|+||+|+.... .....+++.++++... ....+++++||++|.|+ ++|++.|..++|.|
T Consensus 122 iv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 122 VVINKIDRPDAR-PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EEEECCCCCCCC-HHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHHhcCCCC
Confidence 999999997432 2233445555443211 12568999999999765 57888888888765
No 81
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.5e-22 Score=197.65 Aligned_cols=306 Identities=22% Similarity=0.298 Sum_probs=225.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC-------------------------cCccccceecceEeeecceeeeeecccC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ-------------------------TVRFKNELERNITIKLGYANAKIYKCED 157 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~-------------------------~~~~~~e~~~git~~~~~~~~~~~~~~~ 157 (531)
+.++||.++||.++||||+.....|.- .++...|+++++++++..
T Consensus 5 ~~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l---------- 74 (391)
T KOG0052|consen 5 KIHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIAL---------- 74 (391)
T ss_pred ccccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEe----------
Confidence 567999999999999999887433211 123346677776655432
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC------C
Q 039945 158 DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC------P 231 (531)
Q Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~------~ 231 (531)
..+.+..+.++++|.|||++|.++|+.+..+||.++++|.+..++ .
T Consensus 75 ----------------------------~~~~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagisk 126 (391)
T KOG0052|consen 75 ----------------------------WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 126 (391)
T ss_pred ----------------------------ecccceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccc
Confidence 223334478999999999999999999999999999999984332 4
Q ss_pred CcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 232 QPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 232 ~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
.+|+++|..+...+|++++++.+||||...+.......+++.+... ... -+.|.+....
T Consensus 127 ngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~~r~~ei~k~~~--------~~~--~~~g~n~~~~----------- 185 (391)
T KOG0052|consen 127 NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVS--------SYI--KKIGYNPAAV----------- 185 (391)
T ss_pred cchhhhhhhhhccccceeeeEEeecccccCCCccccchhhhheeee--------eee--eccccCChhh-----------
Confidence 6799999999999999999999999998754333333333311110 000 0011122211
Q ss_pred CCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeeccc
Q 039945 312 ERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQN 391 (531)
Q Consensus 312 ~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~ 391 (531)
..+.|.+.+ .| +..|.++.++.+...|.. ...++++..++++
T Consensus 186 -----------~~~~~~~~g--------~~------~~t~iie~~~~v~~~~~~-------------~~~~vk~~~~~~~ 227 (391)
T KOG0052|consen 186 -----------LQDVYKIGG--------IG------VETGISEPGMDVTFAPSG-------------VTTEVKSVKVHHE 227 (391)
T ss_pred -----------hccceeecc--------ee------eeeeeccCccceeccccc-------------cccccccEEEEec
Confidence 112232221 22 788899999999888863 2457778888887
Q ss_pred ceeEEecCceEEEeeecCccccccccccceeeccCCCccc-eeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEE
Q 039945 392 ELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPE-VFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILM 470 (531)
Q Consensus 392 ~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~-~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 470 (531)
....+.+|+.|++..+ ++...++.+|+++.+....|. -...|.+++++|+|+ ..+..|+...
T Consensus 228 a~s~~~p~~~vG~~~~---~v~v~~i~~gnV~~dsK~~p~~~~~g~t~qviilnhp--------------gqis~gy~pv 290 (391)
T KOG0052|consen 228 AGSEDLPGDNVGFNVK---NVSVKDIDRGNVVGDSKNDPPVEAAGFTAQVIILNHP--------------GQISVGYAPV 290 (391)
T ss_pred cCccCCCcceeeeecc---cCccCcccccceecccccCCccccccceeeEEEecCc--------------cccCCCcccc
Confidence 7778999999999887 888889999999976665544 467999999999984 4688999999
Q ss_pred EEeeceeeeEEEEEecCc----------------------eEEEEeCCeeecccCC------EEEEEeccCCCceEEEEE
Q 039945 471 LNIGSMSTGARVLAVKND----------------------LAKLQLTSPVCTSRGE------KIALSRRVEKHWRLIGWG 522 (531)
Q Consensus 471 l~~g~~~~~~~v~~i~~~----------------------~v~~~l~~p~~~~~g~------r~ilr~~~~~~~~tig~G 522 (531)
+.|++.++.|++..+... .+.+.+.+|+|++.+. ||.+|| ...++|.|
T Consensus 291 ldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~~ve~~~~~~~l~rfav~d----~~~tvavg 366 (391)
T KOG0052|consen 291 LDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPLCVESFSDYVPLGRFAVRD----MRQTVAVG 366 (391)
T ss_pred ccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCccccccccccccccchhhhh----hhcccccc
Confidence 999999999999998652 5677789999998875 899996 67899999
Q ss_pred EEee
Q 039945 523 QIQA 526 (531)
Q Consensus 523 ~I~~ 526 (531)
.|..
T Consensus 367 vika 370 (391)
T KOG0052|consen 367 VIKA 370 (391)
T ss_pred ceee
Confidence 8864
No 82
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.85 E-value=1.2e-20 Score=186.21 Aligned_cols=118 Identities=20% Similarity=0.311 Sum_probs=92.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC-------------------cCccccceecceEeeecceeeeeecccCCCCCCCcc
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ-------------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMC 165 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~-------------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~ 165 (531)
.+||+++||+|+|||||+++|+... .+....|++|++++......
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~---------------- 65 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQ---------------- 65 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEE----------------
Confidence 3789999999999999999997321 11234566777766554422
Q ss_pred ccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc
Q 039945 166 YKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM 245 (531)
Q Consensus 166 ~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~ 245 (531)
++|.+ ..++|||||||.+|...+..+++.+|++|+|+|++.+ ...++..++..+...
T Consensus 66 -------------~~~~~---------~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g-~~~~~~~i~~~~~~~ 122 (267)
T cd04169 66 -------------FEYRD---------CVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG-VEPQTRKLFEVCRLR 122 (267)
T ss_pred -------------EeeCC---------EEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC-ccHHHHHHHHHHHhc
Confidence 22222 7899999999999999999999999999999999987 677888888888777
Q ss_pred CCceEEEEEeccCCccH
Q 039945 246 RLQHIIILQNKVDLIQE 262 (531)
Q Consensus 246 ~~~~iIvviNK~Dl~~~ 262 (531)
++| +++++||+|+...
T Consensus 123 ~~P-~iivvNK~D~~~a 138 (267)
T cd04169 123 GIP-IITFINKLDREGR 138 (267)
T ss_pred CCC-EEEEEECCccCCC
Confidence 754 8999999998643
No 83
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=2.8e-21 Score=173.42 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.||+|||||+|+|+|... .+ .+.||+|.+...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~----------~v-----------------~n~pG~Tv~~~~-------------- 39 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ----------KV-----------------GNWPGTTVEKKE-------------- 39 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE----------EE-----------------EESTTSSSEEEE--------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc----------ee-----------------cCCCCCCeeeee--------------
Confidence 5799999999999999999999742 11 122666655321
Q ss_pred cccccceeeEEEEecCChhh------HHHHHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEecc
Q 039945 186 NCRMKLLRHVSFVDCPGHDI------LMATMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~------~~~~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~ 257 (531)
+.+......+.|+|+||..+ -.+-+...+ ..+|++++|+||+.- .+....+..+..+|+ |+|+|+||+
T Consensus 40 g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---~r~l~l~~ql~e~g~-P~vvvlN~~ 115 (156)
T PF02421_consen 40 GIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---ERNLYLTLQLLELGI-PVVVVLNKM 115 (156)
T ss_dssp EEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---HHHHHHHHHHHHTTS-SEEEEEETH
T ss_pred EEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---HHHHHHHHHHHHcCC-CEEEEEeCH
Confidence 22232337999999999421 111122222 679999999999752 234445566667885 599999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHH
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYI 304 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L 304 (531)
|+..........+.+.+.+ ++|++++||++|+|+++|+++|
T Consensus 116 D~a~~~g~~id~~~Ls~~L------g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 116 DEAERKGIEIDAEKLSERL------GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp HHHHHTTEEE-HHHHHHHH------TS-EEEEBTTTTBTHHHHHHHH
T ss_pred HHHHHcCCEECHHHHHHHh------CCCEEEEEeCCCcCHHHHHhhC
Confidence 9876544333455666665 5799999999999999999875
No 84
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.85 E-value=3.1e-20 Score=184.45 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=108.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++|++|+|||||+|+|+|... .+ +++.|+|||+... +
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~---------~~-----------------vs~~~~TTr~~i~--------------~ 41 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI---------SI-----------------TSPKAQTTRNRIS--------------G 41 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE---------ee-----------------cCCCCCcccCcEE--------------E
Confidence 589999999999999999998631 01 3456777776321 1
Q ss_pred ccccceeeEEEEecCChhh--------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccC
Q 039945 187 CRMKLLRHVSFVDCPGHDI--------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVD 258 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~--------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~D 258 (531)
.......++.|+||||+.+ +.+.+...+..+|++++|+|++.. ...+ ...+..+...+ .|+++|+||+|
T Consensus 42 i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~-~~~~-~~i~~~l~~~~-~p~ilV~NK~D 118 (270)
T TIGR00436 42 IHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQW-NGDG-EFVLTKLQNLK-RPVVLTRNKLD 118 (270)
T ss_pred EEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC-CchH-HHHHHHHHhcC-CCEEEEEECee
Confidence 1111125799999999532 233456678999999999999875 3332 44455566555 56999999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+............+.+. ....+++++||++|.|+++|+++|.+.+|.
T Consensus 119 l~~~~~~~~~~~~~~~~-----~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 119 NKFKDKLLPLIDKYAIL-----EDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCCHHHHHHHHHHHHhh-----cCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 98654433322222222 123389999999999999999999988875
No 85
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.9e-21 Score=200.73 Aligned_cols=226 Identities=19% Similarity=0.227 Sum_probs=163.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.-++|+||+++|||-|+..|.+.+. .++...|||+.++.+++.+... -..|..+.. .....+.++
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNV---qegeaggitqqIgAt~fp~~ni-------~e~tk~~~~--~~K~~~kvP--- 540 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNV---QEGEAGGITQQIGATYFPAENI-------REKTKELKK--DAKKRLKVP--- 540 (1064)
T ss_pred ceEEEeecccccchHHHHHhhcccc---ccccccceeeeccccccchHHH-------HHHHHHHHh--hhhhhcCCC---
Confidence 4579999999999999999988754 4566789999999876533211 111111110 011123344
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCc-cHHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLI-QENV 264 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~-~~~~ 264 (531)
.+.+||||||+.|.....++...||++|||||...| +.+||.+.+.+++..+. |+||++||+|+. +|..
T Consensus 541 --------g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG-lepqtiESi~lLR~rkt-pFivALNKiDRLYgwk~ 610 (1064)
T KOG1144|consen 541 --------GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG-LEPQTIESINLLRMRKT-PFIVALNKIDRLYGWKS 610 (1064)
T ss_pred --------eeEEecCCCchhhhhhhhccccccceEEEEeehhcc-CCcchhHHHHHHHhcCC-CeEEeehhhhhhccccc
Confidence 489999999999999999999999999999999999 89999999999998774 599999999974 2210
Q ss_pred -----H--------HHHHHHHHHHH-------hccc------------CCCCCEEEecccCccchHHHHHHHHccCCC--
Q 039945 265 -----A--------INQHEAIMKFI-------QGTV------------ADGAPVVPISAQLKYNIDVVCEYIVKKIPI-- 310 (531)
Q Consensus 265 -----~--------~~~~~~i~~~l-------~~~~------------~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~-- 310 (531)
+ .....++...+ .+.+ ...+.++|+||.+|+||.+|+-+|..+...
T Consensus 611 ~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 611 CPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred CCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 0 11122222211 1111 234578999999999999999998854332
Q ss_pred -CCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecC
Q 039945 311 -PERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPG 364 (531)
Q Consensus 311 -~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~ 364 (531)
.+-.....+.+.|..+-.+.| .|+.+-..+..|.|+.||.|++...
T Consensus 691 ~~kl~y~~ev~cTVlEVKvieG--------~GtTIDViLvNG~L~eGD~IvvcG~ 737 (1064)
T KOG1144|consen 691 VEKLAYVDEVQCTVLEVKVIEG--------HGTTIDVILVNGELHEGDQIVVCGL 737 (1064)
T ss_pred HHHHhhhhheeeEEEEEEeecC--------CCceEEEEEEcceeccCCEEEEcCC
Confidence 122345567888888776655 7898999999999999999998743
No 86
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.83 E-value=5.8e-20 Score=176.16 Aligned_cols=171 Identities=21% Similarity=0.293 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC----------------cCccccceecceEeeecceeeeeecccCCCCCCCcccccc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ----------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAY 169 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~----------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~ 169 (531)
+||+++||+|+|||||+++|++.. .+....|+++|+++......+.....
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~-------------- 66 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS-------------- 66 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC--------------
Confidence 478999999999999999998421 22334677778777654322211000
Q ss_pred CCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce
Q 039945 170 GSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH 249 (531)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~ 249 (531)
......++|||||||.+|...+..++..+|++++|+|+..+ ...++.+++..+...+ .|
T Consensus 67 -------------------~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~-~~~~~~~~~~~~~~~~-~p 125 (213)
T cd04167 67 -------------------KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEG-VTSNTERLIRHAILEG-LP 125 (213)
T ss_pred -------------------CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHcC-CC
Confidence 00126899999999999999999999999999999999887 5666666666666666 56
Q ss_pred EEEEEeccCCcc-------H---HHHHHHHHHHHHHHhcccC--------CCCCEEEecccCccchH--------HHHHH
Q 039945 250 IIILQNKVDLIQ-------E---NVAINQHEAIMKFIQGTVA--------DGAPVVPISAQLKYNID--------VVCEY 303 (531)
Q Consensus 250 iIvviNK~Dl~~-------~---~~~~~~~~~i~~~l~~~~~--------~~~~ii~iSa~~g~gi~--------~L~~~ 303 (531)
+++|+||+|++. . ..+.+..+++...++.... ....+++.|++.|+++. +|++.
T Consensus 126 ~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~ 205 (213)
T cd04167 126 IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDS 205 (213)
T ss_pred EEEEEECcccCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHH
Confidence 899999999861 1 2333445555555543221 22348889999999887 89999
Q ss_pred HHccCCCC
Q 039945 304 IVKKIPIP 311 (531)
Q Consensus 304 L~~~l~~~ 311 (531)
|.+.+|.|
T Consensus 206 ~~~~~~~~ 213 (213)
T cd04167 206 IVSNIPSP 213 (213)
T ss_pred HHhhCCCC
Confidence 98888865
No 87
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=3.9e-19 Score=163.17 Aligned_cols=160 Identities=25% Similarity=0.356 Sum_probs=111.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
.|+++|++|+|||||+++|++... ......++|.+....... +. .
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~---~~~~~~~~t~~~~~~~~~-----------------------------~~---~ 46 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV---AAGEAGGITQHIGAFEVP-----------------------------AE---V 46 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc---ccccCCCeEEeeccEEEe-----------------------------cc---c
Confidence 489999999999999999986532 122233455544322110 00 0
Q ss_pred ccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHH
Q 039945 187 CRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAI 266 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~ 266 (531)
.....+.||||||+..|.......+..+|++++|+|++.+ ...++.+.+..+...+. |+++|+||+|+.... ..
T Consensus 47 ---~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~~~~~~~~~~-p~ivv~NK~Dl~~~~-~~ 120 (168)
T cd01887 47 ---LKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDG-VMPQTIEAIKLAKAANV-PFIVALNKIDKPNAN-PE 120 (168)
T ss_pred ---CCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCC-ccHHHHHHHHHHHHcCC-CEEEEEEceeccccc-HH
Confidence 0016899999999998887777788999999999999987 56777777777777775 589999999987432 11
Q ss_pred HHHHHHHHHHhc---ccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 267 NQHEAIMKFIQG---TVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 267 ~~~~~i~~~l~~---~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
...+.+..+... ......+++++||++|+|+++|+++|.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 121 RVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred HHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 222222222111 11235789999999999999999999854
No 88
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.81 E-value=2.5e-19 Score=147.51 Aligned_cols=112 Identities=76% Similarity=1.226 Sum_probs=104.2
Q ss_pred CCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeeccccee
Q 039945 315 FIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQ 394 (531)
Q Consensus 315 ~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~ 394 (531)
.++|++|+|.++|+|++|+...+..+|.|++|+|.+|.|++||+|.|.|.....+ .+.+.|.|..++|.||++++..++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~-~~~~~~~pi~T~I~sl~~~~~~l~ 80 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKD-EGKIKCRPIFTKIVSLKAENNDLQ 80 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeec-CCCeeEEEEEEEEEEEEecCcccc
Confidence 5789999999999999999999999999999999999999999999999855443 667889999999999999999999
Q ss_pred EEecCceEEEeeecCccccccccccceeeccCC
Q 039945 395 FAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVG 427 (531)
Q Consensus 395 ~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~ 427 (531)
+|.||+.+++..++++++++.|..+|+|++.++
T Consensus 81 ~a~pGgliGvgT~Ldpsltk~D~l~GqV~g~pG 113 (113)
T cd03688 81 EAVPGGLIGVGTKLDPTLTKADRLVGQVVGEPG 113 (113)
T ss_pred EEeCCCeEEEccccCccccccceeeEEEeecCC
Confidence 999999999999999999999999999998763
No 89
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.81 E-value=7.2e-21 Score=201.28 Aligned_cols=222 Identities=18% Similarity=0.159 Sum_probs=139.9
Q ss_pred cccCCCccCCcccccceeeEEeeeecccccccccc-cccCCCCccccccchhhhccccccccccccccccccccccCCCC
Q 039945 18 HTPSHNQYSGKPQSNLGLAVVLRSQLAQRSICFTG-LNITSGNTDNKERGIFKETGKMSRKGLMEQDLSKLDVTKLHPLS 96 (531)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (531)
+..|.+|++|.....+.. |+++.....+.++. ++|+++...+..++.+..........+.+- .+..+
T Consensus 140 ~~~al~~l~G~l~~~~~~---~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l----~~~~~----- 207 (449)
T PRK05291 140 ARLALRQLQGALSKLINE---LREELLELLALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEAL----LASAR----- 207 (449)
T ss_pred HHHHHHhcCcHHHHHHHH---HHHHHHHHHHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHH----HHHHH-----
Confidence 446677888888877777 66666666666665 777776554444333333211111111110 00000
Q ss_pred hhhhccCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCC
Q 039945 97 PEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDN 176 (531)
Q Consensus 97 ~~~~~~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 176 (531)
.....+..++|+++|++|+|||||+|+|++... .+ +++.|++|+++..
T Consensus 208 -~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~---------a~-----------------v~~~~gtT~d~~~----- 255 (449)
T PRK05291 208 -QGEILREGLKVVIAGRPNVGKSSLLNALLGEER---------AI-----------------VTDIAGTTRDVIE----- 255 (449)
T ss_pred -HHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCC---------cc-----------------cCCCCCcccccEE-----
Confidence 011113458999999999999999999998531 11 2345677776421
Q ss_pred CCCCCCCCccccccceeeEEEEecCChhhHH--------HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 177 PLCDVPGFENCRMKLLRHVSFVDCPGHDILM--------ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 177 ~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~--------~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
..+.+.| ..+.|+||||++++. ..+...+..+|++++|+|++.+ ...+..+. +......
T Consensus 256 ~~i~~~g---------~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~-~s~~~~~~---l~~~~~~ 322 (449)
T PRK05291 256 EHINLDG---------IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEP-LTEEDDEI---LEELKDK 322 (449)
T ss_pred EEEEECC---------eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCC-CChhHHHH---HHhcCCC
Confidence 2233333 689999999986432 2345567899999999999876 33332222 2223346
Q ss_pred eEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 249 HIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
|+++|+||+|+.+..... . ....+++++||++|.|+++|+++|.+.++
T Consensus 323 piiiV~NK~DL~~~~~~~-------~------~~~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 323 PVIVVLNKADLTGEIDLE-------E------ENGKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred CcEEEEEhhhccccchhh-------h------ccCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 799999999997543211 1 23468999999999999999999987764
No 90
>PRK15494 era GTPase Era; Provisional
Probab=99.81 E-value=5.3e-19 Score=180.67 Aligned_cols=160 Identities=26% Similarity=0.321 Sum_probs=110.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
....+|+++|++|+|||||+|+|+|... .+ +++.+++|++... ..+.++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~---------~i-----------------vs~k~~tTr~~~~-----~~~~~~ 98 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKL---------SI-----------------VTPKVQTTRSIIT-----GIITLK 98 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCce---------ee-----------------ccCCCCCccCcEE-----EEEEeC
Confidence 3457999999999999999999998631 00 2345666665321 112222
Q ss_pred CCccccccceeeEEEEecCChhh--------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEE
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDI--------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQ 254 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~--------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvvi 254 (531)
+ .++.||||||..+ +.+.....+..+|++|+|+|+..+ .......++..++..+.+ .|+|+
T Consensus 99 ~---------~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s-~~~~~~~il~~l~~~~~p-~IlVi 167 (339)
T PRK15494 99 D---------TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS-FDDITHNILDKLRSLNIV-PIFLL 167 (339)
T ss_pred C---------eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC-CCHHHHHHHHHHHhcCCC-EEEEE
Confidence 2 6899999999632 233344567899999999999875 444445556666666655 57899
Q ss_pred eccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 255 NKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 255 NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
||+|+.+. . ..++.+.+... ....+++++||++|.|+++|+++|.+.+|.
T Consensus 168 NKiDl~~~-~----~~~~~~~l~~~-~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 168 NKIDIESK-Y----LNDIKAFLTEN-HPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred EhhcCccc-c----HHHHHHHHHhc-CCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 99999753 2 22333333221 224679999999999999999999988875
No 91
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.81 E-value=2.8e-19 Score=177.47 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=87.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCc---------------CccccceecceEeeecceeeeeecccCCCCCCCccccccCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQT---------------VRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGS 171 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~---------------~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 171 (531)
||+++||+|+|||||+++|++... +...+|+++++++....
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~------------------------ 56 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSV------------------------ 56 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhccccccee------------------------
Confidence 689999999999999999974211 01123334444433221
Q ss_pred CCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEE
Q 039945 172 GKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHII 251 (531)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iI 251 (531)
..+.|. ...++||||||+.+|...+..++..+|++++|+|++.+ ...++...+..+...++| .+
T Consensus 57 -----~~~~~~---------~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g-~~~~~~~~~~~~~~~~~p-~i 120 (268)
T cd04170 57 -----APLEWK---------GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSG-VEVGTEKLWEFADEAGIP-RI 120 (268)
T ss_pred -----EEEEEC---------CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCC-CCHHHHHHHHHHHHcCCC-EE
Confidence 112222 26899999999999999999999999999999999987 677888888888888865 78
Q ss_pred EEEeccCCccH
Q 039945 252 ILQNKVDLIQE 262 (531)
Q Consensus 252 vviNK~Dl~~~ 262 (531)
+++||+|+...
T Consensus 121 ivvNK~D~~~~ 131 (268)
T cd04170 121 IFINKMDRERA 131 (268)
T ss_pred EEEECCccCCC
Confidence 89999998753
No 92
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=1.8e-19 Score=165.50 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=76.8
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHH-HHH--cCCceEEEEEeccCCccHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAA-VEI--MRLQHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~-~~~--~~~~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
..+.+|||||+++|...+...+..+|++++|+|++...........+.. ++. ....|+++++||+|+.......+..
T Consensus 50 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~ 129 (167)
T cd04160 50 ARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIK 129 (167)
T ss_pred EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHH
Confidence 7899999999999888888888999999999999764211112222221 211 1225699999999987543222222
Q ss_pred HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 270 EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 270 ~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
+.+............+++++||++|+|+++++++|.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 130 EVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred HHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 2222222112224568999999999999999999974
No 93
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=5.9e-19 Score=187.44 Aligned_cols=161 Identities=22% Similarity=0.212 Sum_probs=116.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+|+|++... .+ +.+.|++|++... ..+.+.
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~---------~~-----------------~~~~~gtt~~~~~-----~~~~~~ 219 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEER---------VI-----------------VSDIAGTTRDSID-----TPFERD 219 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc---------ee-----------------ecCCCCceEEEEE-----EEEEEC
Confidence 3568999999999999999999998631 11 1223455554210 111112
Q ss_pred CCccccccceeeEEEEecCChhh----------H-HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEE
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDI----------L-MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHII 251 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~----------~-~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iI 251 (531)
...+.|+||||+.+ | ...+.+.+..+|++|+|+|++.+ ...++...+..+...+ +|+|
T Consensus 220 ---------~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~-~~~~~~~i~~~~~~~~-~~~i 288 (435)
T PRK00093 220 ---------GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEG-ITEQDLRIAGLALEAG-RALV 288 (435)
T ss_pred ---------CeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCC-CCHHHHHHHHHHHHcC-CcEE
Confidence 26799999999632 1 23456678999999999999988 7788888777777666 5699
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
+|+||+|+.+.....+..+++...+.. ....|++++||++|.|+++|++.+.+.
T Consensus 289 vv~NK~Dl~~~~~~~~~~~~~~~~l~~--~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 289 IVVNKWDLVDEKTMEEFKKELRRRLPF--LDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred EEEECccCCCHHHHHHHHHHHHHhccc--ccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999998665555555566555432 346799999999999999999987753
No 94
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.80 E-value=6.2e-19 Score=187.01 Aligned_cols=161 Identities=23% Similarity=0.209 Sum_probs=115.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+|+|++... .+ .++.|++|++.. ...+.+.|
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~---------~~-----------------~~~~~gtt~~~~-----~~~~~~~~ 219 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEER---------VI-----------------VSDIAGTTRDSI-----DIPFERNG 219 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCe---------ee-----------------cCCCCCceECcE-----eEEEEECC
Confidence 458999999999999999999998631 11 123455555431 11112222
Q ss_pred CccccccceeeEEEEecCChhhHH-----------HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEE
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILM-----------ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIII 252 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~-----------~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIv 252 (531)
..+.||||||+.++. ..+...+..+|++|+|+|++++ ...++...+..+...+ +|+|+
T Consensus 220 ---------~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~-~~~~~~~~~~~~~~~~-~~iii 288 (429)
T TIGR03594 220 ---------KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEG-ITEQDLRIAGLILEAG-KALVI 288 (429)
T ss_pred ---------cEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCC-ccHHHHHHHHHHHHcC-CcEEE
Confidence 679999999964321 2345678899999999999988 6777777777776666 56999
Q ss_pred EEeccCCc-cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 253 LQNKVDLI-QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 253 viNK~Dl~-~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
|+||+|+. +....++..+++...+.. ....+++++||++|.|+++|++++.+..
T Consensus 289 v~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vi~~SA~~g~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 289 VVNKWDLVKDEKTREEFKKELRRKLPF--LDFAPIVFISALTGQGVDKLLDAIDEVY 343 (429)
T ss_pred EEECcccCCCHHHHHHHHHHHHHhccc--CCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998 444444555555554432 2457999999999999999999987543
No 95
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.79 E-value=1.3e-19 Score=185.49 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=101.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
...+|+++|++|+|||||+|+|++... + +.+.+++|++..+ ..+.+++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~----------~-----------------v~~~~~tT~d~~~-----~~i~~~~ 235 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV----------Y-----------------AADQLFATLDPTT-----RRLDLPD 235 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce----------e-----------------eccCCccccCCEE-----EEEEeCC
Confidence 448999999999999999999998531 1 1223445554321 1222321
Q ss_pred CccccccceeeEEEEecCCh-hh-------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEE
Q 039945 184 FENCRMKLLRHVSFVDCPGH-DI-------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIIL 253 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~-~~-------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvv 253 (531)
...+.|+||||. ++ -.+.+...+..||++|+|+|++.+....+...+..++..++ .+|+++|
T Consensus 236 --------~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV 307 (351)
T TIGR03156 236 --------GGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLV 307 (351)
T ss_pred --------CceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEE
Confidence 168999999996 21 12334556789999999999987522222222234555544 4679999
Q ss_pred EeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 254 QNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 254 iNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
+||+|+.+..... .... ...+++++||++|.|+++|+++|.+.
T Consensus 308 ~NK~Dl~~~~~v~-------~~~~----~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 308 YNKIDLLDEPRIE-------RLEE----GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEeecCCChHhHH-------HHHh----CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 9999997643221 1111 12468999999999999999999754
No 96
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=3.9e-18 Score=171.52 Aligned_cols=158 Identities=25% Similarity=0.335 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
-.|+++|++|||||||+|+|+|.... + +++.|.|++....
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~---------~-----------------vs~~~~tt~~~i~-------------- 45 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKIS---------I-----------------VSPKPQTTRHRIR-------------- 45 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCcee---------e-----------------cCCCCCcccccEE--------------
Confidence 46899999999999999999986320 0 2334555554211
Q ss_pred cccccceeeEEEEecCChhh--------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEecc
Q 039945 186 NCRMKLLRHVSFVDCPGHDI--------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~--------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~ 257 (531)
+........+.|+||||+.+ +...+...+..+|++++|+|++.+ ........+..+...+ .|+++|+||+
T Consensus 46 ~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~-~~~~~~~i~~~l~~~~-~pvilVlNKi 123 (292)
T PRK00089 46 GIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK-IGPGDEFILEKLKKVK-TPVILVLNKI 123 (292)
T ss_pred EEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC-CChhHHHHHHHHhhcC-CCEEEEEECC
Confidence 11111126899999999532 234556677899999999999875 4444555556665444 4689999999
Q ss_pred CCc-cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 258 DLI-QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 258 Dl~-~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
|+. +........+.+.+. ....+++++||++|.|+++|+++|.+.+|.
T Consensus 124 Dl~~~~~~l~~~~~~l~~~-----~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 124 DLVKDKEELLPLLEELSEL-----MDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred cCCCCHHHHHHHHHHHHhh-----CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 998 444444444444432 235689999999999999999999988864
No 97
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.79 E-value=2.1e-18 Score=158.71 Aligned_cols=156 Identities=22% Similarity=0.246 Sum_probs=97.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++|++|||||||+|+|++.... +...|+++++. ....+.+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~---------------------------v~~~~~~t~~~-----~~~~~~~~~--- 46 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK---------------------------IADYPFTTLVP-----NLGVVRVDD--- 46 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc---------------------------ccCCCccccCC-----cceEEEcCC---
Confidence 6899999999999999999975320 00112222221 001111111
Q ss_pred ccccceeeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCCCC-CCCcchHHHHHHHHHc----CCceEEEEE
Q 039945 187 CRMKLLRHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAANES-CPQPQTSEHLAAVEIM----RLQHIIILQ 254 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~~~-~~~~qt~e~l~~~~~~----~~~~iIvvi 254 (531)
...+.|+||||+. .+...+.+.+..+|++++|+|++.. ....+.......+... ..+|+++|+
T Consensus 47 -----~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~ 121 (170)
T cd01898 47 -----GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVL 121 (170)
T ss_pred -----CCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEE
Confidence 1389999999963 2344555666789999999999864 1111122222333322 236789999
Q ss_pred eccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 255 NKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 255 NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
||+|+.+.....+. +..++.. ....+++++||++|.|+++|+++|.+.
T Consensus 122 NK~Dl~~~~~~~~~---~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 122 NKIDLLDEEELFEL---LKELLKE--LWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EchhcCCchhhHHH---HHHHHhh--CCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 99999765443332 2223321 125689999999999999999998754
No 98
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=3.7e-18 Score=156.92 Aligned_cols=158 Identities=23% Similarity=0.227 Sum_probs=106.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+|+|++.... ++ .+.++++++.. ...+...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~---------~~-----------------~~~~~~~~~~~-----~~~~~~~-- 48 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERV---------IV-----------------SDIAGTTRDSI-----DVPFEYD-- 48 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccce---------ec-----------------cCCCCCccCce-----eeEEEEC--
Confidence 478999999999999999999975310 00 01123333211 0111122
Q ss_pred ccccccceeeEEEEecCChhhH----------H-HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEE
Q 039945 185 ENCRMKLLRHVSFVDCPGHDIL----------M-ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIIL 253 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~----------~-~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvv 253 (531)
...+.+|||||+.+. . ..+...+..+|++++|+|++.+ ...+....+..+...+ +|++++
T Consensus 49 -------~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~-~~~iiv 119 (174)
T cd01895 49 -------GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEG-ITEQDLRIAGLILEEG-KALVIV 119 (174)
T ss_pred -------CeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCC-cchhHHHHHHHHHhcC-CCEEEE
Confidence 257899999996322 1 2334566889999999999886 4555555555555555 568999
Q ss_pred EeccCCccH--HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 254 QNKVDLIQE--NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 254 iNK~Dl~~~--~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
+||+|+.+. .......+.+.+.+.. ....+++++||++|+|++++++++.+
T Consensus 120 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 120 VNKWDLVEKDSKTMKEFKKEIRRKLPF--LDYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred EeccccCCccHHHHHHHHHHHHhhccc--ccCCceEEEeccCCCCHHHHHHHHHH
Confidence 999999865 3444445555554432 23578999999999999999999874
No 99
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=3.2e-18 Score=182.94 Aligned_cols=162 Identities=21% Similarity=0.239 Sum_probs=113.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+|+|++.. +.+ +++.|++|+++. ...+.+.|
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~---------~~~-----------------~s~~~gtT~d~~-----~~~~~~~~ 258 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEE---------RSV-----------------VDDVAGTTVDPV-----DSLIELGG 258 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCC---------ccc-----------------ccCCCCccCCcc-----eEEEEECC
Confidence 45899999999999999999999863 111 234467776642 12223333
Q ss_pred CccccccceeeEEEEecCChh---------hHHHH--HHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEE
Q 039945 184 FENCRMKLLRHVSFVDCPGHD---------ILMAT--MLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIII 252 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~---------~~~~~--~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIv 252 (531)
..+.||||||.+ ++... ....+..+|++++|+|++++ ...+....+..+...+ +|+|+
T Consensus 259 ---------~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~-~s~~~~~~~~~~~~~~-~piIi 327 (472)
T PRK03003 259 ---------KTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEP-ISEQDQRVLSMVIEAG-RALVL 327 (472)
T ss_pred ---------EEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCC-CCHHHHHHHHHHHHcC-CCEEE
Confidence 678999999952 22222 23456899999999999987 6666666666665556 56999
Q ss_pred EEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 253 LQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 253 viNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
|+||+|+.+........+++.+.+.. ....+++++||++|.|+++|++.|.+.++
T Consensus 328 V~NK~Dl~~~~~~~~~~~~i~~~l~~--~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 328 AFNKWDLVDEDRRYYLEREIDRELAQ--VPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred EEECcccCChhHHHHHHHHHHHhccc--CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999998644333333444444332 23478999999999999999999876543
No 100
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=7.9e-18 Score=156.86 Aligned_cols=155 Identities=21% Similarity=0.244 Sum_probs=105.7
Q ss_pred hhhccCCeeEEEEEcCCCCcHHHHHHHHHCCC-cCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCC
Q 039945 98 EVISRQATINIGTIGHVAHGKSTVVKAISGVQ-TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDN 176 (531)
Q Consensus 98 ~~~~~~~~~~V~iiG~~~~GKSTLi~~L~g~~-~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 176 (531)
+.+.+....+|+++|++|+|||||+|+|++.. ... .++.+++|++..
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~--------------------------~~~~~~~t~~~~------ 58 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLAR--------------------------TSKTPGRTQLIN------ 58 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCccc--------------------------ccCCCCcceEEE------
Confidence 33444666899999999999999999999753 100 011122222210
Q ss_pred CCCCCCCCccccccceeeEEEEecCCh----------hhHHHH---HHHhccccCceEEEEeCCCCCCCcchHHHHHHHH
Q 039945 177 PLCDVPGFENCRMKLLRHVSFVDCPGH----------DILMAT---MLNGAAIMDGALLLIAANESCPQPQTSEHLAAVE 243 (531)
Q Consensus 177 ~~~~~~g~~~~~~~~~~~i~liDtPG~----------~~~~~~---~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~ 243 (531)
...+ ...+.||||||+ .+|... .++....+|++++|+|++.+ ...++.+.+..+.
T Consensus 59 -~~~~----------~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~-~~~~~~~~~~~~~ 126 (179)
T TIGR03598 59 -FFEV----------NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHP-LKELDLEMLEWLR 126 (179)
T ss_pred -EEEe----------CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCC-CCHHHHHHHHHHH
Confidence 0000 136899999995 223322 23333457899999999886 6666777677777
Q ss_pred HcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchH
Q 039945 244 IMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNID 298 (531)
Q Consensus 244 ~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~ 298 (531)
..+ +|+++++||+|+..........+++++.++.. ....+++++||++|+|++
T Consensus 127 ~~~-~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~-~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 127 ERG-IPVLIVLTKADKLKKSELNKQLKKIKKALKKD-ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HcC-CCEEEEEECcccCCHHHHHHHHHHHHHHHhhc-cCCCceEEEECCCCCCCC
Confidence 776 45999999999987766667777888877653 234589999999999984
No 101
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=4.1e-18 Score=176.37 Aligned_cols=161 Identities=22% Similarity=0.223 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
..|+|+|.||||||||+|+|++... + +++.|+||+... ...+.+..
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~----------~-----------------vs~~p~TT~~p~-----~Giv~~~~-- 205 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP----------K-----------------VADYPFTTLVPN-----LGVVRVDD-- 205 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc----------c-----------------ccCCCCCccCcE-----EEEEEeCC--
Confidence 4799999999999999999997531 1 234577777632 12222221
Q ss_pred cccccceeeEEEEecCChhh-------HHHHHHHhccccCceEEEEeCCCC---CCCcchHHHHHHHHHc----CCceEE
Q 039945 186 NCRMKLLRHVSFVDCPGHDI-------LMATMLNGAAIMDGALLLIAANES---CPQPQTSEHLAAVEIM----RLQHII 251 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~-------~~~~~~~~l~~aD~~llVvDa~~~---~~~~qt~e~l~~~~~~----~~~~iI 251 (531)
...+.|+||||..+ ....+++.+..+|++++|+|++.. ....+....+..+..+ ..+|+|
T Consensus 206 ------~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~I 279 (390)
T PRK12298 206 ------ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRW 279 (390)
T ss_pred ------CcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEE
Confidence 14699999999532 445667788999999999998721 1111222233333332 236789
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+|+||+|+.......+..+++.+.+ ....+++++||+++.|+++|+++|.+.++.
T Consensus 280 lVlNKiDl~~~~el~~~l~~l~~~~----~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 280 LVFNKIDLLDEEEAEERAKAIVEAL----GWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred EEEeCCccCChHHHHHHHHHHHHHh----CCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 9999999987654444444443322 122479999999999999999999987764
No 102
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.77 E-value=5e-18 Score=157.18 Aligned_cols=156 Identities=18% Similarity=0.184 Sum_probs=101.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++++|||||+++|++..... ..-| +++.. ..+.+.
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~------~~~t--~g~~~---------------------------~~~~~~ 56 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDT------ISPT--LGFQI---------------------------KTLEYE 56 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC------cCCc--cccce---------------------------EEEEEC
Confidence 445789999999999999999998753210 0001 11100 000111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHH--HcCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVE--IMRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~--~~~~~~iIvviNK~Dl 259 (531)
...+.+|||||++.|...+...+..+|++++|+|++......+...++ .++. .....|+++|+||+|+
T Consensus 57 ---------~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 127 (173)
T cd04154 57 ---------GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDL 127 (173)
T ss_pred ---------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccc
Confidence 268999999999988777777788999999999998641111122222 2221 1133679999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcc--cCCCCCEEEecccCccchHHHHHHHHc
Q 039945 260 IQENVAINQHEAIMKFIQGT--VADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~--~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
.... ..+++.+.++.. .....+++++||++|.|+++++++|.+
T Consensus 128 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 128 PGAL----SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ccCC----CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 7532 122333333211 124568999999999999999999863
No 103
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.76 E-value=7.8e-18 Score=153.59 Aligned_cols=141 Identities=18% Similarity=0.247 Sum_probs=96.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++|++|+|||||+|+|.|.... . .-|..+. +.+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~----~---~~~~~v~----------------------------------~~~--- 38 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL----A---RKTQAVE----------------------------------FND--- 38 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc----C---ccceEEE----------------------------------ECC---
Confidence 6999999999999999999886321 0 0111110 110
Q ss_pred ccccceeeEEEEecCCh----hhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH
Q 039945 187 CRMKLLRHVSFVDCPGH----DILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~----~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~ 262 (531)
. .+|||||. .++...+..++..+|++++|+|++.+ ........+.+ ...+|+++++||+|+.+.
T Consensus 39 ------~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~-~s~~~~~~~~~---~~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 39 ------K--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDP-ESRLPAGLLDI---GVSKRQIAVISKTDMPDA 106 (158)
T ss_pred ------C--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCc-ccccCHHHHhc---cCCCCeEEEEEccccCcc
Confidence 1 36999995 56777777788999999999999876 33333322221 223568999999998653
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+ . +.+.++++... ...|++++||++|+|+++|+++|.+.++
T Consensus 107 ~-~----~~~~~~~~~~~-~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 107 D-V----AATRKLLLETG-FEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred c-H----HHHHHHHHHcC-CCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 2 1 22333333321 2369999999999999999999987664
No 104
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=1.1e-17 Score=151.51 Aligned_cols=148 Identities=19% Similarity=0.171 Sum_probs=100.5
Q ss_pred EEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcccc
Q 039945 109 GTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCR 188 (531)
Q Consensus 109 ~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~ 188 (531)
+++|++|+|||||+++|++.... .. ...++++++.. ...+.+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~--~~------------------------~~~~~~t~~~~-----~~~~~~~------ 43 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA--IV------------------------EDTPGVTRDRI-----YGEAEWG------ 43 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE--ee------------------------cCCCCceeCce-----eEEEEEC------
Confidence 57999999999999999975310 00 01122222210 0111122
Q ss_pred ccceeeEEEEecCChhhHHH--------HHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCc
Q 039945 189 MKLLRHVSFVDCPGHDILMA--------TMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLI 260 (531)
Q Consensus 189 ~~~~~~i~liDtPG~~~~~~--------~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~ 260 (531)
...+.+|||||+.++.. .....+..+|++++|+|+..+ ......+++.++...+ .|+++|+||+|+.
T Consensus 44 ---~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~~-~piiiv~nK~D~~ 118 (157)
T cd01894 44 ---GREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREG-LTPADEEIAKYLRKSK-KPVILVVNKVDNI 118 (157)
T ss_pred ---CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEecccc-CCccHHHHHHHHHhcC-CCEEEEEECcccC
Confidence 26799999999876432 445567889999999999876 4555666667777666 5699999999998
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
..... .+. +.. ....+++++|+++|.|+++|+++|.++
T Consensus 119 ~~~~~---~~~----~~~--~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 119 KEEDE---AAE----FYS--LGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ChHHH---HHH----HHh--cCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 75432 111 111 123378999999999999999999864
No 105
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=8.8e-18 Score=178.19 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=113.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++|++|+|||||+|+|++... .+ +.+.|++||+. ....+.|.|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~---------~~-----------------v~~~~g~t~d~-----~~~~~~~~~--- 46 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD---------AI-----------------VSDTPGVTRDR-----KYGDAEWGG--- 46 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc---------ce-----------------ecCCCCcccCc-----eEEEEEECC---
Confidence 489999999999999999998531 11 12335666653 122333443
Q ss_pred ccccceeeEEEEecCCh--------hhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccC
Q 039945 187 CRMKLLRHVSFVDCPGH--------DILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVD 258 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~--------~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~D 258 (531)
..+.||||||+ +.+...+..++..+|++++|+|+..+ ......+...+++..+ +|+++|+||+|
T Consensus 47 ------~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~-~~~~d~~i~~~l~~~~-~piilVvNK~D 118 (429)
T TIGR03594 47 ------REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREG-LTPEDEEIAKWLRKSG-KPVILVANKID 118 (429)
T ss_pred ------eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCC-CCHHHHHHHHHHHHhC-CCEEEEEECcc
Confidence 68999999996 44556677788999999999999987 6777777778887777 56999999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
+...... ..++.+ ....+++++||++|.|+++|++++.+.++..
T Consensus 119 ~~~~~~~---~~~~~~------lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 119 GKKEDAV---AAEFYS------LGFGEPIPISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred CCccccc---HHHHHh------cCCCCeEEEeCCcCCChHHHHHHHHHhcCcc
Confidence 8754321 111111 2344789999999999999999999887653
No 106
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.76 E-value=7.6e-18 Score=150.50 Aligned_cols=136 Identities=24% Similarity=0.330 Sum_probs=90.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++|++|+|||||+|+|++... ...-|+.+ .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-------~~~~t~~~----------------------------------~------ 34 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-------LYKKTQAV----------------------------------E------ 34 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-------ccccceeE----------------------------------E------
Confidence 689999999999999999987531 00001111 0
Q ss_pred ccccceeeEEEEecCChh----hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH
Q 039945 187 CRMKLLRHVSFVDCPGHD----ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~----~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~ 262 (531)
..-.+|||||.. .+.+.+...++.+|++++|+|++++ ...+...++ ...+ +|+|+|+||+|+.+.
T Consensus 35 ------~~~~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~-~s~~~~~~~---~~~~-~p~ilv~NK~Dl~~~ 103 (142)
T TIGR02528 35 ------YNDGAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDP-ESRFPPGFA---SIFV-KPVIGLVTKIDLAEA 103 (142)
T ss_pred ------EcCeeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCC-CcCCChhHH---Hhcc-CCeEEEEEeeccCCc
Confidence 112689999972 4445555567899999999999876 344443332 2233 478999999999753
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHH
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIV 305 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~ 305 (531)
.. ..++..++++. ....+++++||++|.|+++|+++|.
T Consensus 104 ~~---~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 104 DV---DIERAKELLET--AGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred cc---CHHHHHHHHHH--cCCCcEEEEecCCCCCHHHHHHHHh
Confidence 21 12223333322 1234899999999999999999874
No 107
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=4.3e-17 Score=149.35 Aligned_cols=161 Identities=22% Similarity=0.303 Sum_probs=114.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCc-CccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQT-VRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~-~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...-||++|++|+|||||+|+|++... +| ++..||.|+-.. .+++.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LAr--------------------------tSktPGrTq~iN-------ff~~~ 69 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLAR--------------------------TSKTPGRTQLIN-------FFEVD 69 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceee--------------------------cCCCCCccceeE-------EEEec
Confidence 446799999999999999999998541 11 123344444320 11111
Q ss_pred CCccccccceeeEEEEecCCh----------h---hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce
Q 039945 183 GFENCRMKLLRHVSFVDCPGH----------D---ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH 249 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~----------~---~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~ 249 (531)
..+.|+|.||+ + +.+...+..=.+-.++++++|+..+ +...+++.++++...+++
T Consensus 70 ----------~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~-~~~~D~em~~~l~~~~i~- 137 (200)
T COG0218 70 ----------DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP-PKDLDREMIEFLLELGIP- 137 (200)
T ss_pred ----------CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCC-CcHHHHHHHHHHHHcCCC-
Confidence 34899999994 1 1222233332456789999999988 788888999999999976
Q ss_pred EEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 250 IIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 250 iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
++|++||+|.+...........+.+.+.........++..|+.++.|+++|.+.|..++.
T Consensus 138 ~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 138 VIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred eEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 799999999998777666677777655432222222888999999999999999987654
No 108
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=2.3e-17 Score=151.37 Aligned_cols=160 Identities=15% Similarity=0.177 Sum_probs=101.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+++|.+... ..+....+..+..... +.+.+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~---~~~~~~t~~~~~~~~~-----------------------------~~~~~- 49 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTF---SERQGNTIGVDFTMKT-----------------------------LEIEG- 49 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC---cccCCCccceEEEEEE-----------------------------EEECC-
Confidence 47999999999999999999975321 1111111111111100 01111
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEEEeccCCccH
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIILQNKVDLIQE 262 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvviNK~Dl~~~ 262 (531)
....+.|+||||++.|.......+..+|++++|+|++..........++..+.... ..|+++|+||+|+...
T Consensus 50 ------~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 50 ------KRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred ------EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 01478999999999988877788899999999999987521112223333333322 2468999999999753
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
... ..++..++.+. ....+++++||++|.|++++++.|.+.
T Consensus 124 ~~~--~~~~~~~~~~~--~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 124 REV--LFEEACTLAEK--NGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred ccc--CHHHHHHHHHH--cCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 211 11222222222 233578999999999999999998754
No 109
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.75 E-value=8.3e-18 Score=153.37 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=74.2
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HH--c--CCceEEEEEeccCCccHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EI--M--RLQHIIILQNKVDLIQENVAIN 267 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~--~--~~~~iIvviNK~Dl~~~~~~~~ 267 (531)
..+.++||||+.+|...+...+..+|++++|+|++...........+..+ .. + ...|+++|+||+|+.+....
T Consensus 45 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~-- 122 (162)
T cd04157 45 LSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTA-- 122 (162)
T ss_pred EEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCH--
Confidence 68999999999998877777889999999999998652111122222222 21 1 13579999999999754221
Q ss_pred HHHHHHHHHh--cccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 268 QHEAIMKFIQ--GTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 268 ~~~~i~~~l~--~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
+++...+. .......+++++||++|.|+++++++|.+
T Consensus 123 --~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 123 --VKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred --HHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 12222221 11112346899999999999999999864
No 110
>PRK04213 GTP-binding protein; Provisional
Probab=99.75 E-value=5.3e-17 Score=154.09 Aligned_cols=160 Identities=21% Similarity=0.224 Sum_probs=100.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
...+|+++|.+|+|||||+|+|++... ..+...+.|.+.. .+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~---~~~~~~~~t~~~~-------------------------------~~~~-- 51 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV---RVGKRPGVTRKPN-------------------------------HYDW-- 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCceeeCce-------------------------------EEee--
Confidence 347899999999999999999997531 1111222222110 0000
Q ss_pred CccccccceeeEEEEecCCh-----------hhHHHHH----HHhccccCceEEEEeCCCCC----------CCcchHHH
Q 039945 184 FENCRMKLLRHVSFVDCPGH-----------DILMATM----LNGAAIMDGALLLIAANESC----------PQPQTSEH 238 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~-----------~~~~~~~----~~~l~~aD~~llVvDa~~~~----------~~~qt~e~ 238 (531)
..+.+|||||+ +.|...+ ...+..+|++++|+|++... ....+.++
T Consensus 52 ---------~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l 122 (201)
T PRK04213 52 ---------GDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEM 122 (201)
T ss_pred ---------cceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHH
Confidence 25899999994 2332221 22456678999999986421 01123445
Q ss_pred HHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhc---ccCCCCCEEEecccCccchHHHHHHHHccCCCCC
Q 039945 239 LAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQG---TVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPE 312 (531)
Q Consensus 239 l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~---~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~ 312 (531)
+..+...++ |+++|+||+|+.+.. .+..+++.+.+.- +.....+++++||++| |+++|+++|.+.++...
T Consensus 123 ~~~~~~~~~-p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 123 FDFLRELGI-PPIVAVNKMDKIKNR--DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHcCC-CeEEEEECccccCcH--HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 556665664 589999999997543 2233444444321 0001236899999999 99999999998776543
No 111
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.75 E-value=1.7e-17 Score=151.55 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=74.1
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHH--HcCCceEEEEEeccCCccHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVE--IMRLQHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~--~~~~~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
..+.||||||++.|.......++.+|++|+|+|++......+..+.+ .++. ....+|++++.||+|+.+.....+..
T Consensus 44 ~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~ 123 (159)
T cd04150 44 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVT 123 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHH
Confidence 68999999999988877777789999999999997641112222222 2222 12336799999999996432111222
Q ss_pred HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 270 EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 270 ~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
+.+. +.........++++||++|.|+++++++|.+
T Consensus 124 ~~~~--~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 124 DKLG--LHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHhC--ccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 2110 1111123446789999999999999999864
No 112
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.75 E-value=6.4e-19 Score=185.40 Aligned_cols=221 Identities=14% Similarity=0.167 Sum_probs=133.6
Q ss_pred cccccCCCccCCcccccceeeEEeeeecccccccccc-cccCCCCccccccchhhhccccccccccccccccccccccCC
Q 039945 16 LTHTPSHNQYSGKPQSNLGLAVVLRSQLAQRSICFTG-LNITSGNTDNKERGIFKETGKMSRKGLMEQDLSKLDVTKLHP 94 (531)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (531)
..+..|.+|++|..+..+.. |+.+.....+.++. ++|+++.... ..+..........+.. .++...
T Consensus 130 ~~~~~A~~~l~G~ls~~~~~---~r~~l~~~~a~iea~iDf~ee~~~~---~~~~~~l~~~~~~l~~----ll~~~~--- 196 (442)
T TIGR00450 130 KVKDIALNKLAGELDQKIEA---IRKSLLQLLAQVEVNIDYEEDDDEQ---DSLNQLLLSIIAELKD----ILNSYK--- 196 (442)
T ss_pred HHHHHHHHhcCcHHHHHHHH---HHHHHHHHHHHeeEECCcCCCCccH---HHHHHHHHHHHHHHHH----HHHHHH---
Confidence 34456777888888877777 77777777777766 7777754221 1111110000000000 001110
Q ss_pred CChhhhccCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCC
Q 039945 95 LSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKE 174 (531)
Q Consensus 95 ~~~~~~~~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 174 (531)
....++.++|+++|++|+|||||+|+|++.. +.+ +++.|+||+++.
T Consensus 197 ----~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~---------~ai-----------------vs~~pgtTrd~~---- 242 (442)
T TIGR00450 197 ----LEKLDDGFKLAIVGSPNVGKSSLLNALLKQD---------RAI-----------------VSDIKGTTRDVV---- 242 (442)
T ss_pred ----HHHhhcCCEEEEECCCCCcHHHHHHHHhCCC---------Ccc-----------------cCCCCCcEEEEE----
Confidence 0112456899999999999999999999852 111 234467777642
Q ss_pred CCCCCCCCCCccccccceeeEEEEecCChhhH---H-----HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC
Q 039945 175 DNPLCDVPGFENCRMKLLRHVSFVDCPGHDIL---M-----ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR 246 (531)
Q Consensus 175 ~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~---~-----~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~ 246 (531)
...+.+.| ..+.+|||||++++ + ..+...+..+|++++|+|++.+ ...+.. ++..+...+
T Consensus 243 -~~~i~~~g---------~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~-~s~~~~-~l~~~~~~~ 310 (442)
T TIGR00450 243 -EGDFELNG---------ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQP-LTKDDF-LIIDLNKSK 310 (442)
T ss_pred -EEEEEECC---------EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCC-CChhHH-HHHHHhhCC
Confidence 22333443 67899999997532 2 2345677899999999999875 333322 333333334
Q ss_pred CceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 247 LQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 247 ~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+|+|+|+||+|+... .. +.+.+ ....+++.+||++ .|++++++.|.+.+
T Consensus 311 -~piIlV~NK~Dl~~~-~~----~~~~~------~~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 311 -KPFILVLNKIDLKIN-SL----EFFVS------SKVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred -CCEEEEEECccCCCc-ch----hhhhh------hcCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 569999999999753 11 11111 1235789999998 58877777776544
No 113
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=1.5e-17 Score=177.68 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=105.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
..+|+|+|.+|+|||||+|+|++.... + +.+.|++|++.. ...+.+.|
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~---------~-----------------v~~~~gvT~d~~-----~~~~~~~~- 85 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREA---------V-----------------VEDVPGVTRDRV-----SYDAEWNG- 85 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcc---------c-----------------ccCCCCCCEeeE-----EEEEEECC-
Confidence 368999999999999999999975311 0 122344444421 11122332
Q ss_pred ccccccceeeEEEEecCChh--------hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEec
Q 039945 185 ENCRMKLLRHVSFVDCPGHD--------ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK 256 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~--------~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK 256 (531)
..+.||||||+. .+...+...+..||++|+|+|++.+ ......+.+..++..+ +|+|+|+||
T Consensus 86 --------~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~-~s~~~~~i~~~l~~~~-~piilV~NK 155 (472)
T PRK03003 86 --------RRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVG-ATATDEAVARVLRRSG-KPVILAANK 155 (472)
T ss_pred --------cEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHcC-CCEEEEEEC
Confidence 679999999965 2344455677899999999999987 4554555666666655 569999999
Q ss_pred cCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 257 VDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 257 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+|+..... + ..++.. ......+++||++|.|+++|+++|.+.++.
T Consensus 156 ~Dl~~~~~--~----~~~~~~---~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 156 VDDERGEA--D----AAALWS---LGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred ccCCccch--h----hHHHHh---cCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 99864321 1 111111 112235799999999999999999987765
No 114
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.74 E-value=3.3e-17 Score=150.56 Aligned_cols=155 Identities=18% Similarity=0.235 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|++|+|||||+++|++.... .. +.|++|+... .....+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~---~~------------------------~~~~~t~~~~-----~~~~~~~--- 45 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE---VA------------------------PYPFTTKSLF-----VGHFDYK--- 45 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc---cC------------------------CCCCccccee-----EEEEccC---
Confidence 37899999999999999999975321 00 0111111110 0001111
Q ss_pred cccccceeeEEEEecCChhh-------HH-HHHHHhc-cccCceEEEEeCCCCCCC--cchHHHHHHHHHc-CCceEEEE
Q 039945 186 NCRMKLLRHVSFVDCPGHDI-------LM-ATMLNGA-AIMDGALLLIAANESCPQ--PQTSEHLAAVEIM-RLQHIIIL 253 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~-------~~-~~~~~~l-~~aD~~llVvDa~~~~~~--~qt~e~l~~~~~~-~~~~iIvv 253 (531)
...++||||||+.+ +. ......+ ..+|++|+|+|++..... ....+.+..+... ...|+|+|
T Consensus 46 ------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv 119 (168)
T cd01897 46 ------YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVV 119 (168)
T ss_pred ------ceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEE
Confidence 26899999999732 11 1122222 346999999999864111 1112233333332 24679999
Q ss_pred EeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 254 QNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 254 iNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+||+|+.+.....+ ..++.+ ....+++++||++|.|+++|+++|.+.+
T Consensus 120 ~NK~Dl~~~~~~~~----~~~~~~---~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 120 LNKIDLLTFEDLSE----IEEEEE---LEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred EEccccCchhhHHH----HHHhhh---hccCceEEEEecccCCHHHHHHHHHHHh
Confidence 99999986544332 222221 2457899999999999999999998654
No 115
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.74 E-value=2.4e-17 Score=144.73 Aligned_cols=136 Identities=22% Similarity=0.280 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|.+||.+++|||||+++|.|... ....|+.+.|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-------~~~KTq~i~~-------------------------------------- 36 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-------RYKKTQAIEY-------------------------------------- 36 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-------CcCccceeEe--------------------------------------
Confidence 4789999999999999999998642 2223333322
Q ss_pred cccccceeeEEEEecCC----hhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCc-
Q 039945 186 NCRMKLLRHVSFVDCPG----HDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLI- 260 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG----~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~- 260 (531)
.=.+||||| ++.|....+.....||++++|.||+.. ...-.. .++..+. +|+|-|+||+|+.
T Consensus 37 --------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~-~~~~pP---~fa~~f~-~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 37 --------YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEP-RSVFPP---GFASMFN-KPVIGVITKIDLPS 103 (143)
T ss_pred --------cccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCC-CccCCc---hhhcccC-CCEEEEEECccCcc
Confidence 124699999 567788888888999999999999875 222222 2344454 6799999999998
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHH
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIV 305 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~ 305 (531)
+..+ .+..+++|+..+ ...+|++|+.+|+|+++|.++|.
T Consensus 104 ~~~~----i~~a~~~L~~aG--~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 104 DDAN----IERAKKWLKNAG--VKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred chhh----HHHHHHHHHHcC--CCCeEEEECCCCcCHHHHHHHHh
Confidence 3333 334444454322 33679999999999999999986
No 116
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=2.2e-17 Score=167.74 Aligned_cols=163 Identities=20% Similarity=0.178 Sum_probs=104.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+-...|+|+|.||||||||+|+|++.... +++.|.||+.. ....+.+.
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~---------------------------va~ypfTT~~p-----~~G~v~~~ 203 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPK---------------------------IADYPFTTLHP-----NLGVVRVD 203 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCc---------------------------cCCCCCceeCc-----eEEEEEeC
Confidence 33457999999999999999999975320 12234444442 11122221
Q ss_pred CCccccccceeeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc----CCceEE
Q 039945 183 GFENCRMKLLRHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM----RLQHII 251 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~----~~~~iI 251 (531)
....+.++||||.. .+....++.+..+|++|+|+|++......+...+...+... ..+|++
T Consensus 204 --------~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~I 275 (335)
T PRK12299 204 --------DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRI 275 (335)
T ss_pred --------CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeE
Confidence 12579999999953 24456677888999999999998642111112222333322 236799
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+|+||+|+.+...... +.+..+++. ...+++++||++++|+++|+++|.+.++.
T Consensus 276 IV~NKiDL~~~~~~~~--~~~~~~~~~---~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 276 LVLNKIDLLDEEEERE--KRAALELAA---LGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEEECcccCCchhHHH--HHHHHHHHh---cCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 9999999976443221 112222221 24689999999999999999999876653
No 117
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.74 E-value=3.3e-17 Score=149.71 Aligned_cols=159 Identities=19% Similarity=0.249 Sum_probs=100.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|.+|+|||||++++++.... .+... |+...+ ...+.+.|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~---~~~~~--t~~~~~----------------------------~~~~~~~~- 47 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV---TDYDP--TIEDSY----------------------------TKQCEIDG- 47 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC---cccCC--CccceE----------------------------EEEEEECC-
Confidence 379999999999999999999864311 00000 000000 00011111
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCCcc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl~~ 261 (531)
....+.+|||||+++|...+...+..+|++++|+|+++.........++..+... ...|+++++||+|+..
T Consensus 48 ------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 48 ------QWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred ------EEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 1157899999999998887777889999999999998642111112222222221 2347999999999975
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.... ..++..++.+. ...+++++||++|.|+++++++|.+.+
T Consensus 122 ~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 122 QRKV--SREEGQELARK---LKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ccee--cHHHHHHHHHH---cCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 3211 11223333332 246899999999999999999998643
No 118
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.74 E-value=3.4e-17 Score=149.92 Aligned_cols=158 Identities=17% Similarity=0.199 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|++++|||||+++|++.... .+....+..+..... +.+.+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~---~~~~~t~~~~~~~~~-----------------------------~~~~~-- 46 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV---SKYLPTIGIDYGVKK-----------------------------VSVRN-- 46 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCccceeEEEEE-----------------------------EEECC--
Confidence 47999999999999999999975321 111111111111000 00111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH-c------CCceEEEEEeccC
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI-M------RLQHIIILQNKVD 258 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~-~------~~~~iIvviNK~D 258 (531)
....+.||||||++.|.......+..+|++|+|+|.++.........++..+.. . ...|+++|+||+|
T Consensus 47 -----~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 121 (168)
T cd04119 47 -----KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121 (168)
T ss_pred -----eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchh
Confidence 126799999999988887777778999999999999864111111222222222 2 2367999999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
+...... ..++...+... ...+++++||++|.|+++++++|.+.
T Consensus 122 l~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 122 LTKHRAV--SEDEGRLWAES---KGFKYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred ccccccc--CHHHHHHHHHH---cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 9732110 11222222222 23689999999999999999998754
No 119
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.74 E-value=4.1e-17 Score=148.70 Aligned_cols=157 Identities=15% Similarity=0.101 Sum_probs=100.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++|++++|||||+++|++.... .+.....+.+..... +.+++
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~-----------------------------~~~~~--- 46 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD---NQYQATIGIDFLSKT-----------------------------MYLED--- 46 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---ccCCCceeeeEEEEE-----------------------------EEECC---
Confidence 7899999999999999999876321 111112222111100 01111
Q ss_pred ccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HHcC-CceEEEEEeccCCccHHH
Q 039945 187 CRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EIMR-LQHIIILQNKVDLIQENV 264 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~~~-~~~iIvviNK~Dl~~~~~ 264 (531)
....+.+|||||+..|.......+..+|++++|+|++......+...++..+ ...+ ..|+++++||+|+.....
T Consensus 47 ----~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~ 122 (161)
T cd01861 47 ----KTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ 122 (161)
T ss_pred ----EEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCc
Confidence 1146899999999988877778889999999999998642111222333322 2233 257999999999953211
Q ss_pred HHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 265 AINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 265 ~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
...++...+.+. ...+++++||++|.|+++|+++|.+.
T Consensus 123 --~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 123 --VSTEEGEKKAKE---LNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred --cCHHHHHHHHHH---hCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 111222222221 24789999999999999999999754
No 120
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=9.1e-17 Score=151.60 Aligned_cols=159 Identities=19% Similarity=0.235 Sum_probs=107.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC-cCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ-TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~-~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
...++|+++|++|+|||||+|+|++.. ... ..+.+++|+.... ..+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~--------------------------~~~~~~~t~~~~~-------~~~ 68 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLAR--------------------------TSKTPGRTQLINF-------FEV 68 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCccc--------------------------ccCCCCceeEEEE-------Eec
Confidence 345889999999999999999999752 110 0111222222100 000
Q ss_pred CCCccccccceeeEEEEecCCh----------hhHHH---HHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 182 PGFENCRMKLLRHVSFVDCPGH----------DILMA---TMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~----------~~~~~---~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
...+.||||||+ +.+.. ........++++++|+|++.+ ......+....+...+.
T Consensus 69 ----------~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~i~~~l~~~~~- 136 (196)
T PRK00454 69 ----------NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHP-LKELDLQMIEWLKEYGI- 136 (196)
T ss_pred ----------CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCC-CCHHHHHHHHHHHHcCC-
Confidence 157999999995 23322 223334456789999998875 44444455566666674
Q ss_pred eEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 249 HIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
|+++++||+|+.+....+...+++.+.+.. ...+++++||++|.|+++++++|.+.+.
T Consensus 137 ~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 137 PVLIVLTKADKLKKGERKKQLKKVRKALKF---GDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cEEEEEECcccCCHHHHHHHHHHHHHHHHh---cCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 489999999998766555555666666643 1568999999999999999999987654
No 121
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.74 E-value=3e-17 Score=183.55 Aligned_cols=162 Identities=14% Similarity=0.163 Sum_probs=113.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+|+|++.. +.+ +.+.|+||++.. ...+.+.|
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~---------~~~-----------------v~~~~gtT~d~~-----~~~~~~~~ 497 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEE---------RAV-----------------VNDLAGTTRDPV-----DEIVEIDG 497 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc---------ccc-----------------cCCCCCCCcCcc-----eeEEEECC
Confidence 34799999999999999999999863 111 223467776642 12233333
Q ss_pred CccccccceeeEEEEecCChh---------hHHHH--HHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEE
Q 039945 184 FENCRMKLLRHVSFVDCPGHD---------ILMAT--MLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIII 252 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~---------~~~~~--~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIv 252 (531)
..+.||||||+. ++... ....+..+|++++|+|++.+ ...+....+..+...+ +|+|+
T Consensus 498 ---------~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~-~s~~~~~i~~~~~~~~-~piIi 566 (712)
T PRK09518 498 ---------EDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQP-ISEQDLKVMSMAVDAG-RALVL 566 (712)
T ss_pred ---------CEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCC-CCHHHHHHHHHHHHcC-CCEEE
Confidence 678899999953 22222 24557889999999999987 6777776666666566 56999
Q ss_pred EEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 253 LQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 253 viNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
|+||+|+.+....+...+.+...+.. ....+++++||++|.|+++|++.+.+.++
T Consensus 567 V~NK~DL~~~~~~~~~~~~~~~~l~~--~~~~~ii~iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 567 VFNKWDLMDEFRRQRLERLWKTEFDR--VTWARRVNLSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred EEEchhcCChhHHHHHHHHHHHhccC--CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999998654333333334333321 24568999999999999999999886554
No 122
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.74 E-value=3.9e-17 Score=149.02 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
+||+++|.+++|||||+++|++... ..+....++.+..... +.+.+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~---~~~~~~~~~~~~~~~~-----------------------------~~~~~-- 46 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF---KEDSQHTIGVEFGSKI-----------------------------IRVGG-- 46 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCceeeeEEEEE-----------------------------EEECC--
Confidence 4799999999999999999986431 1111111111110000 00000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~~ 263 (531)
....+.||||||+++|.......++.+|++++|+|+++.....+...++..+..+ ...|+++|.||+|+....
T Consensus 47 -----~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 121 (161)
T cd04113 47 -----KRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR 121 (161)
T ss_pred -----EEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc
Confidence 1257899999999998888888889999999999998752111222333333322 235699999999997532
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
.. ..+++..+.+. ...+++++||++|.|++++++++.+.
T Consensus 122 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 122 EV--TFLEASRFAQE---NGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred cC--CHHHHHHHHHH---cCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 11 12223333332 23789999999999999999998754
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.73 E-value=1.9e-17 Score=150.82 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=74.5
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHH--cCCceEEEEEeccCCccHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEI--MRLQHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
..+.||||||+.+|...+...+..+|++|+|+|++.........+.+ .+++. ....|+++|+||+|+.+.....
T Consensus 43 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~--- 119 (158)
T cd04151 43 LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEA--- 119 (158)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHH---
Confidence 68999999999988877777889999999999997641011112222 22222 1236799999999997532111
Q ss_pred HHHHHHHhc--ccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 270 EAIMKFIQG--TVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 270 ~~i~~~l~~--~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
++.+.+.. ......+++++||++|.|+++|+++|.+
T Consensus 120 -~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 120 -EISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred -HHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 22222211 1112357999999999999999999864
No 124
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.73 E-value=7.1e-17 Score=147.66 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+++|||||+++|++..- .......+...+.... ..+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~---~~~~~~~~~~~~~~~~-----------------------------~~~~--- 45 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY---EPQQLSTYALTLYKHN-----------------------------AKFE--- 45 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC---CCCcCCceeeEEEEEE-----------------------------EEEC---
Confidence 4799999999999999999985421 1111111111110000 0000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc-CCceEEEEEeccCCccHHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM-RLQHIIILQNKVDLIQENV 264 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~-~~~~iIvviNK~Dl~~~~~ 264 (531)
.....+.||||||++.|.......+..+|++|+|+|++..........++..+... ...|+++|+||+|+....
T Consensus 46 ----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~- 120 (161)
T cd04124 46 ----GKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV- 120 (161)
T ss_pred ----CEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-
Confidence 01257899999999999888788889999999999998652111122333334332 235799999999985321
Q ss_pred HHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 265 AINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 265 ~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
. ++..++... ...+++++||++|.|++++++.+.+.+
T Consensus 121 ~----~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 121 T----QKKFNFAEK---HNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred H----HHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 112222221 246899999999999999999988644
No 125
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.73 E-value=4.6e-17 Score=149.43 Aligned_cols=158 Identities=15% Similarity=0.172 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+|+|||||+++|++.... ..... |+...+....++ ..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~---~~~~~--t~~~~~~~~~~~---------------------------~~--- 46 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT---SAFVS--TVGIDFKVKTVF---------------------------RN--- 46 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC---CCCCC--ceeeEEEEEEEE---------------------------EC---
Confidence 68999999999999999999865321 00001 111111000000 00
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~~ 263 (531)
.....+.||||||+++|.......++.+|++++|+|.+......+..+++..+... ...|+++|+||+|+....
T Consensus 47 ----~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 47 ----DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred ----CEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 01257899999999998887788889999999999987542111223333333332 235799999999997532
Q ss_pred HH-HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 264 VA-INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 264 ~~-~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.. .+...++.+. ...+++++||++|.|+++|+++|.+.+
T Consensus 123 ~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 123 VVSSERGRQLADQ------LGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred ccCHHHHHHHHHH------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 11 1112222222 235799999999999999999998654
No 126
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.73 E-value=4.3e-17 Score=165.48 Aligned_cols=160 Identities=22% Similarity=0.219 Sum_probs=102.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+-...|+++|.||||||||+++|++.... +++.|.||+.. ....+.+.
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~---------------------------va~y~fTT~~p-----~ig~v~~~ 202 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPK---------------------------IADYPFTTLVP-----NLGVVRVD 202 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCcc---------------------------ccCCCCCccCC-----EEEEEEeC
Confidence 34468999999999999999999875310 11223333321 11111111
Q ss_pred CCccccccceeeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCCCCC---CCcchHHHHHHHHH----cCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAANESC---PQPQTSEHLAAVEI----MRLQ 248 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~~~~---~~~qt~e~l~~~~~----~~~~ 248 (531)
+ ...+.|+||||+. .+....++.+..+|++|+|+|++... ...+...+...+.. +..+
T Consensus 203 ~--------~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~k 274 (329)
T TIGR02729 203 D--------GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEK 274 (329)
T ss_pred C--------ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccC
Confidence 1 1689999999963 24455667778899999999998531 11111112222222 2246
Q ss_pred eEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 249 HIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
|+++|+||+|+.+.....+..+++.+. ...+++++||++++|+++|+++|.+.+
T Consensus 275 p~IIV~NK~DL~~~~~~~~~~~~l~~~------~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 275 PRIVVLNKIDLLDEEELAELLKELKKA------LGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CEEEEEeCccCCChHHHHHHHHHHHHH------cCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 799999999998764433333333322 136899999999999999999998654
No 127
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.73 E-value=2.9e-17 Score=149.42 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=99.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++|++++|||||+++|++.... +...|...... .+.+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~------~~~~t~~~~~~-----------------------------~~~~~---- 41 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV------TTIPTIGFNVE-----------------------------TVEYK---- 41 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC------CCCCCcCcceE-----------------------------EEEEC----
Confidence 5899999999999999999976421 01111111000 00111
Q ss_pred ccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HH--cCCceEEEEEeccCCccHH
Q 039945 187 CRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EI--MRLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~--~~~~~iIvviNK~Dl~~~~ 263 (531)
...+.+|||||+..|.......+..+|++++|+|++.+........++..+ .. ....|+++|+||+|+....
T Consensus 42 -----~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 42 -----NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred -----CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 268999999999988766677778999999999998642112222333222 21 2236799999999998643
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
..++..+.+.... ......+++++||++|.|+++++++|..
T Consensus 117 ~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 117 SVSELIEKLGLEK--ILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred CHHHHHHhhChhh--ccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 2222222222110 1124568999999999999999999874
No 128
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.73 E-value=3.4e-17 Score=150.93 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=98.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+.++|+++|.+|+|||||+++|...... . ..-|+...+. .+..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~---~---~~~t~g~~~~-----------------------------~~~~-- 50 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV---T---TIPTVGFNVE-----------------------------TVTY-- 50 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc---c---ccCCcccceE-----------------------------EEEE--
Confidence 3489999999999999999999753210 0 0001100000 0000
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHH--cCCceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEI--MRLQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~--~~~~~iIvviNK~Dl~ 260 (531)
....+.||||||+++|.......+..+|++|+|+|+++........+.+ .++.. ....|+++|.||+|+.
T Consensus 51 -------~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 51 -------KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred -------CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 1268999999999988777777789999999999998642111222222 22221 2235799999999986
Q ss_pred cHHHHHHHHHHHHHHHh--cccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 261 QENVAINQHEAIMKFIQ--GTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~--~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
+... .+++.+.+. .......+++++||++|.|+++++++|.+
T Consensus 124 ~~~~----~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 124 DAMK----PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred cCCC----HHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 4311 223333332 11112347899999999999999999864
No 129
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=5.4e-18 Score=172.00 Aligned_cols=163 Identities=21% Similarity=0.257 Sum_probs=115.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..+.|||+|+||+|||||+|+|+.. ++.| +++.||||||- .+..+.+.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~---------drsI-----------------VSpv~GTTRDa-----iea~v~~~ 314 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSRE---------DRSI-----------------VSPVPGTTRDA-----IEAQVTVN 314 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcC---------CceE-----------------eCCCCCcchhh-----heeEeecC
Confidence 56699999999999999999999976 3333 67889999994 56667777
Q ss_pred CCccccccceeeEEEEecCChhh---------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC------
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDI---------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL------ 247 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~---------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~------ 247 (531)
| .++.|+||+|.++ -+......+..+|++++|+||... ...+.......+...+.
T Consensus 315 G---------~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~-~t~sd~~i~~~l~~~~~g~~~~~ 384 (531)
T KOG1191|consen 315 G---------VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEES-DTESDLKIARILETEGVGLVVIV 384 (531)
T ss_pred C---------eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccc-ccccchHHHHHHHHhccceEEEe
Confidence 6 8999999999765 345667788999999999999765 34444444444444332
Q ss_pred -----ceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEE-EecccCccchHHHHHHHHccC
Q 039945 248 -----QHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVV-PISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 248 -----~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii-~iSa~~g~gi~~L~~~L~~~l 308 (531)
.++|+++||+|+..+-. +.......+.........+++ .+|+++++|++.|.++|.+.+
T Consensus 385 ~~~~~~~~i~~~nk~D~~s~~~--~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 385 NKMEKQRIILVANKSDLVSKIP--EMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ccccccceEEEechhhccCccc--cccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 57899999999875411 000000111111112344554 499999999999999987654
No 130
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.73 E-value=4.4e-17 Score=149.88 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=101.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|.+|+|||||++++++... ..+....+..+.... .+.+.+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f---~~~~~~t~~~~~~~~-----------------------------~~~~~~- 49 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF---NPSFISTIGIDFKIR-----------------------------TIELDG- 49 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC---CcccccCccceEEEE-----------------------------EEEECC-
Confidence 47999999999999999999986531 111111111110000 001111
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccH
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQE 262 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~ 262 (531)
....+.|+||||+++|.......+..+|++++|+|+++.....+..+++..+... ...|+++|.||+|+.+.
T Consensus 50 ------~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 50 ------KKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK 123 (167)
T ss_pred ------EEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 1257899999999988877777789999999999997642111222333333332 23578999999999753
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
... ..++..++.+. ...+++++||++|.|+++++++|.+.+
T Consensus 124 ~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 124 RVV--SKEEGEALADE---YGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred cCC--CHHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 211 11222333322 245899999999999999999987653
No 131
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.73 E-value=6.2e-17 Score=147.83 Aligned_cols=160 Identities=15% Similarity=0.147 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|++++|||||+++|++...... ...|....+.. ..+.+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~~t~~~~~~~---------------------------~~v~~~~-- 47 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSEN-----QESTIGAAFLT---------------------------QTVNLDD-- 47 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-----CCCccceeEEE---------------------------EEEEECC--
Confidence 6899999999999999999997642210 00111100000 0001111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvviNK~Dl~~~~ 263 (531)
....+.+|||||++.|.......++.+|++++|+|++......+...++..+.... ..|+++++||+|+....
T Consensus 48 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 122 (163)
T cd01860 48 -----TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR 122 (163)
T ss_pred -----EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC
Confidence 12578999999999887777777889999999999986421222333333333332 24689999999987421
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
. ...++..++... ...+++++||++|.|+++++++|.+.+|
T Consensus 123 ~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~l~ 163 (163)
T cd01860 123 Q--VSTEEAQEYADE---NGLLFFETSAKTGENVNELFTEIAKKLP 163 (163)
T ss_pred c--CCHHHHHHHHHH---cCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 1 011122222322 2368999999999999999999987653
No 132
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.73 E-value=5.3e-17 Score=146.81 Aligned_cols=147 Identities=21% Similarity=0.261 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|++|+|||||+++|++..... ..+.|++++++.. ..+.+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~--------------------------~~~~~~~~~~~~~-----~~~~~~--- 47 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI--------------------------VSDIAGTTRDVIE-----ESIDIG--- 47 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe--------------------------ccCCCCCccceEE-----EEEEeC---
Confidence 579999999999999999999753110 0011222222110 011111
Q ss_pred cccccceeeEEEEecCChhhHH--------HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEecc
Q 039945 186 NCRMKLLRHVSFVDCPGHDILM--------ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~--------~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~ 257 (531)
...++++||||+.++. ..+...+..+|++++|+|++.. . +......+.....+|+++|+||+
T Consensus 48 ------~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~-~---~~~~~~~~~~~~~~~vi~v~nK~ 117 (157)
T cd04164 48 ------GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRG-L---DEEDLEILELPADKPIIVVLNKS 117 (157)
T ss_pred ------CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC-C---CHHHHHHHHhhcCCCEEEEEEch
Confidence 2689999999975432 2345567899999999999864 2 33333333334446799999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
|+.+.... . ......+++++||+++.|+++|+++|.+.+
T Consensus 118 D~~~~~~~----------~--~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 118 DLLPDSEL----------L--SLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred hcCCcccc----------c--cccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 99864332 1 113457899999999999999999997643
No 133
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.72 E-value=6.1e-17 Score=147.29 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|.+|+|||||+++|++.... .+... |....+. ..+.+.+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~---~~~~~--t~~~~~~----------------------------~~~~~~~-- 46 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV---DEYDP--TIEDSYR----------------------------KQVVIDG-- 46 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc---CCcCC--cchheEE----------------------------EEEEECC--
Confidence 58999999999999999999864311 00000 1000000 0001111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcc-hHHHHH-HHHH--cCCceEEEEEeccCCcc
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ-TSEHLA-AVEI--MRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~q-t~e~l~-~~~~--~~~~~iIvviNK~Dl~~ 261 (531)
....+.+|||||+++|.......+..+|++++|+|.+.. ...+ ...++. +.+. ....|+++|.||+|+..
T Consensus 47 -----~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~-~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 47 -----ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSR-KSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred -----EEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 114688999999998887777788899999999998753 1111 112222 2222 12357999999999975
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
.... .+++.++.+. ...+++++||++|.|+++++++|.+.
T Consensus 121 ~~~~---~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 121 RTVS---SRQGQDLAKS---YGIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred ceec---HHHHHHHHHH---hCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 3211 1222232222 24589999999999999999999754
No 134
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.72 E-value=2.9e-17 Score=148.98 Aligned_cols=147 Identities=19% Similarity=0.222 Sum_probs=94.9
Q ss_pred EEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCccccc
Q 039945 110 TIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRM 189 (531)
Q Consensus 110 iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~ 189 (531)
++|++|+|||||+++|++... ......++|.+... ..+++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~---~~~~~~~~t~~~~~-----------------------------~~~~~~~------ 42 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ---KVGNWPGVTVEKKE-----------------------------GRFKLGG------ 42 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc---cccCCCCcccccce-----------------------------EEEeeCC------
Confidence 589999999999999998631 11111222222211 1222332
Q ss_pred cceeeEEEEecCChhhHHH------HHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 190 KLLRHVSFVDCPGHDILMA------TMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 190 ~~~~~i~liDtPG~~~~~~------~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
..+.||||||+.++.. .....+ ..+|++++|+|++.. .+....+..+...+ +|+++|+||+|+.+
T Consensus 43 ---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~~~~-~~~iiv~NK~Dl~~ 115 (158)
T cd01879 43 ---KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL---ERNLYLTLQLLELG-LPVVVALNMIDEAE 115 (158)
T ss_pred ---eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc---hhHHHHHHHHHHcC-CCEEEEEehhhhcc
Confidence 6799999999876542 122223 589999999999753 12223333444556 56999999999976
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
........+.+.+.+ +.+++++||++|.|+++|+++|...
T Consensus 116 ~~~~~~~~~~~~~~~------~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 116 KRGIKIDLDKLSELL------GVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred cccchhhHHHHHHhh------CCCeEEEEccCCCCHHHHHHHHHHH
Confidence 543332233333322 4689999999999999999998754
No 135
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.72 E-value=7.3e-17 Score=147.31 Aligned_cols=159 Identities=19% Similarity=0.226 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|++|+|||||+++|++.... ......++.+.....+ .+.+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~---~~~~~~~~~~~~~~~~-----------------------------~~~~-- 46 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS---EQYKSTIGVDFKTKTI-----------------------------EVDG-- 46 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCceeeEEEEEEE-----------------------------EECC--
Confidence 47999999999999999999875421 1111112211110000 0111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH-HHHHHHHHc--CCceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS-EHLAAVEIM--RLQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~-e~l~~~~~~--~~~~iIvviNK~Dl~~~ 262 (531)
....+.+|||||+..|.......+..+|++++|+|+++.. ..+.. .++..+... ...|+++|+||+|+...
T Consensus 47 -----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 47 -----KRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRE-SFENLKNWLKELREYADPNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred -----EEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccc
Confidence 1157899999999988887788889999999999998642 22111 122222221 23679999999998753
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
... ..+.+.++.+. ...+++++||++|.|+++++++|.+.+.
T Consensus 121 ~~~--~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 121 RQV--SREEAEAFAEE---HGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred cCC--CHHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 211 11122222222 2467999999999999999999987653
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.72 E-value=1.1e-16 Score=152.31 Aligned_cols=155 Identities=22% Similarity=0.220 Sum_probs=98.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|+++|++|||||||+|+|++.... ......-|.+.. ...+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~---~~~~~~~t~~~~-----------------------------~~~~~~~ 86 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVY---AEDQLFATLDPT-----------------------------TRRLRLP 86 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhc---cCCccceeccce-----------------------------eEEEEec
Confidence 44589999999999999999999975310 000001111110 0011111
Q ss_pred CCccccccceeeEEEEecCChhh-----H---HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEE
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDI-----L---MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIII 252 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~-----~---~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIv 252 (531)
+ ...+.||||||+.+ + ...+...+..+|++++|+|++.+....+...+..++..++ .+|+++
T Consensus 87 ~--------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~vii 158 (204)
T cd01878 87 D--------GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMIL 158 (204)
T ss_pred C--------CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEE
Confidence 1 13799999999722 1 1222334578999999999987632222333344554443 357999
Q ss_pred EEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 253 LQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 253 viNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
|+||+|+....... ..+. ....+++++||++|.|+++++++|...
T Consensus 159 V~NK~Dl~~~~~~~-------~~~~---~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 159 VLNKIDLLDDEELE-------ERLE---AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEEccccCChHHHH-------HHhh---cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 99999998654322 1121 245689999999999999999999754
No 137
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.4e-16 Score=162.51 Aligned_cols=123 Identities=23% Similarity=0.303 Sum_probs=97.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC--------------cCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ--------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~--------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
...+||+++||-.||||+|+..|.+.. ++.+..|++||++++..-.++-.-..
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~------------- 192 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDS------------- 192 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecC-------------
Confidence 456899999999999999999997432 23445789999999875433321110
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
....+.++++|||||-+|..++..+++.+|++++|||+.+| .+-++...+..+-... .
T Consensus 193 --------------------~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EG-VmlntEr~ikhaiq~~-~ 250 (971)
T KOG0468|consen 193 --------------------KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEG-VMLNTERIIKHAIQNR-L 250 (971)
T ss_pred --------------------cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccC-ceeeHHHHHHHHHhcc-C
Confidence 11126899999999999999999999999999999999999 8888888887665555 4
Q ss_pred eEEEEEeccCCc
Q 039945 249 HIIILQNKVDLI 260 (531)
Q Consensus 249 ~iIvviNK~Dl~ 260 (531)
++++|+||+|+.
T Consensus 251 ~i~vviNKiDRL 262 (971)
T KOG0468|consen 251 PIVVVINKVDRL 262 (971)
T ss_pred cEEEEEehhHHH
Confidence 699999999975
No 138
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.72 E-value=1.1e-16 Score=147.49 Aligned_cols=159 Identities=15% Similarity=0.164 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|++|+|||||+++|++... ..+....+..+.... .+.+.+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~---~~~~~~t~~~~~~~~-----------------------------~~~~~~-- 46 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTK-----------------------------EVTVDD-- 46 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---CcCcCCccceEEEEE-----------------------------EEEECC--
Confidence 4799999999999999999986531 111011111111000 001111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH-HHH-HHHHHcC-----CceEEEEEeccC
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS-EHL-AAVEIMR-----LQHIIILQNKVD 258 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~-e~l-~~~~~~~-----~~~iIvviNK~D 258 (531)
....+.+|||||++.|.......++.+|++|+|+|++.. ...+.. .+. .++.... ..|+++|+||+|
T Consensus 47 -----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 120 (172)
T cd01862 47 -----KLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNP-KSFESLDSWRDEFLIQASPSDPENFPFVVLGNKID 120 (172)
T ss_pred -----EEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcc
Confidence 115688999999999888778888999999999999764 111111 111 2233222 357899999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+..+... ..+++..+.+. ....+++++||++|.|+++++++|.+.+
T Consensus 121 l~~~~~~--~~~~~~~~~~~--~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 121 LEEKRQV--STKKAQQWCQS--NGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred ccccccc--CHHHHHHHHHH--cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 9742111 11222223322 2347899999999999999999987543
No 139
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.72 E-value=6.8e-17 Score=148.28 Aligned_cols=159 Identities=14% Similarity=0.205 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|.+|+|||||+++|++... ..+....++.+..... +.+.|
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~---~~~~~~t~~~~~~~~~-----------------------------~~~~~-- 48 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY---TESYISTIGVDFKIRT-----------------------------IELDG-- 48 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEE-----------------------------EEECC--
Confidence 6899999999999999999986421 1111111111110000 00111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~~ 263 (531)
....+.+|||||+++|.......++.+|++|+|+|+++.....+..+++..+... ...|+++|.||+|+....
T Consensus 49 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 49 -----KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR 123 (166)
T ss_pred -----EEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence 1257899999999998877777889999999999997642112222333333332 235789999999986532
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.. ..++...+.+. ...+++++||++|.|++++++.|.+.+
T Consensus 124 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 124 VV--DYSEAQEFADE---LGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred CC--CHHHHHHHHHH---cCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 21 11222222221 246899999999999999999987643
No 140
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.72 E-value=5.2e-17 Score=150.57 Aligned_cols=155 Identities=17% Similarity=0.108 Sum_probs=98.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
...+|+++|++++|||||+++|++..... ..-|+...+. ...+.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~------~~~t~~~~~~-----------------------------~~~~~- 57 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH------TSPTIGSNVE-----------------------------EIVYK- 57 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC------cCCccccceE-----------------------------EEEEC-
Confidence 34789999999999999999997532110 0011111100 00111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHHc--CCceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
...+.|+||||+..|.......+..+|++++|+|+++........+.+ .++... ...|+++++||+|+.
T Consensus 58 --------~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 58 --------NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred --------CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 268999999999988877777889999999999998641111112222 232221 236799999999987
Q ss_pred cHHHHHHHHHHHHHHHh--cccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 261 QENVAINQHEAIMKFIQ--GTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~--~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
+..... ++.+.+. .......+++++||++|+|+++++++|.+
T Consensus 130 ~~~~~~----~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 130 GAMTPA----EISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CCCCHH----HHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 532111 2222221 00112457999999999999999999864
No 141
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.3e-18 Score=171.60 Aligned_cols=212 Identities=25% Similarity=0.270 Sum_probs=157.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH---CC------C------cCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 104 ATINIGTIGHVAHGKSTVVKAIS---GV------Q------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~---g~------~------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
..+||+++.|.++||||...+++ |. . ++-+..|++||||+.....
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav-------------------- 95 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAV-------------------- 95 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeee--------------------
Confidence 34799999999999999999986 21 1 1234689999999977542
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
.+.|.| .++++||||||-||.-+..+-++..|+++.|+|++.| .++||...|.....+++|
T Consensus 96 ---------~fdwkg---------~rinlidtpghvdf~leverclrvldgavav~dasag-ve~qtltvwrqadk~~ip 156 (753)
T KOG0464|consen 96 ---------NFDWKG---------HRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAG-VEAQTLTVWRQADKFKIP 156 (753)
T ss_pred ---------eccccc---------ceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCC-cccceeeeehhccccCCc
Confidence 345666 7999999999999988888889999999999999999 899999999999999986
Q ss_pred eEEEEEeccCCccHHHHHHHHHHHHHHHh---------------------------------------------------
Q 039945 249 HIIILQNKVDLIQENVAINQHEAIMKFIQ--------------------------------------------------- 277 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~~~~~~~~i~~~l~--------------------------------------------------- 277 (531)
-++++||||...... +...+.+++.|.
T Consensus 157 -~~~finkmdk~~anf-e~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~nd 234 (753)
T KOG0464|consen 157 -AHCFINKMDKLAANF-ENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKND 234 (753)
T ss_pred -hhhhhhhhhhhhhhh-hhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCC
Confidence 588999999865421 122222222211
Q ss_pred -------------------------------ccc---------------------CCCCCEEEecccCccchHHHHHHHH
Q 039945 278 -------------------------------GTV---------------------ADGAPVVPISAQLKYNIDVVCEYIV 305 (531)
Q Consensus 278 -------------------------------~~~---------------------~~~~~ii~iSa~~g~gi~~L~~~L~ 305 (531)
++. ....|+.+-||.++.||.-|++++.
T Consensus 235 pel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavt 314 (753)
T KOG0464|consen 235 PELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVT 314 (753)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhh
Confidence 000 2356889999999999999999999
Q ss_pred ccCCCCCCCCCCCCEEEEEE----eeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEE
Q 039945 306 KKIPIPERNFIDPPNMIVIR----SFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEV 361 (531)
Q Consensus 306 ~~l~~~~~~~~~~~~~~i~~----~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i 361 (531)
-++|.|....-..+..+-++ .|+|- .|+.+|..++.+|++|+|+..-.+.-
T Consensus 315 mylpspeernyeflqwykddlcalafkvl-----hdkqrg~l~fmriysgsi~~~~ai~n 369 (753)
T KOG0464|consen 315 MYLPSPEERNYEFLQWYKDDLCALAFKVL-----HDKQRGPLSFMRIYSGSIHNNLAIFN 369 (753)
T ss_pred hccCChhhcchHHHhhhhhhHHHHhhhhh-----cccccCceeEEEEecccccCceeeee
Confidence 88998854322222222111 12332 35568999999999999999877763
No 142
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.72 E-value=1.1e-16 Score=146.15 Aligned_cols=159 Identities=15% Similarity=0.188 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+++|||||+++|++... ..+....+..+.....+. +..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~-----------------------------~~~-- 46 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF---TKDYKKTIGVDFLEKQIF-----------------------------LRQ-- 46 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCcEEEEEEEEEEE-----------------------------EcC--
Confidence 4799999999999999999986421 111112222211100000 000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch-HHHHHHHH-HcCCceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT-SEHLAAVE-IMRLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~~-~~~~~~iIvviNK~Dl~~~~ 263 (531)
......+.||||||+++|...+...++.+|++++|+|+++.. ..+. ..++..+. .....|+++|+||+|+....
T Consensus 47 ---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~-s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 122 (162)
T cd04106 47 ---SDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRE-SFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQA 122 (162)
T ss_pred ---CCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCEEEEEEChhccccc
Confidence 001267999999999998887778889999999999997641 1111 12222222 22335689999999987532
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
... .++..++.+. ...+++++||++|.|+++|+++|...
T Consensus 123 ~v~--~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 123 VIT--NEEAEALAKR---LQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred CCC--HHHHHHHHHH---cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 211 1222222222 24589999999999999999998753
No 143
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=6.7e-16 Score=163.07 Aligned_cols=117 Identities=26% Similarity=0.332 Sum_probs=96.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC-------------cCccccceecceEeeecceeeeeecccCCCCCCCcccccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ-------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAY 169 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~-------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~ 169 (531)
....||.++.|+|||||||...|+... .|..+.|+.||||.+.+.-+.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~------------------- 67 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISL------------------- 67 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccc-------------------
Confidence 456899999999999999999997322 233468899999998764210
Q ss_pred CCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce
Q 039945 170 GSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH 249 (531)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~ 249 (531)
... ...++|||+|||-||......+...+|.++++||+.+| +..||...++.+-.-+.+
T Consensus 68 ----------~~~---------~~~~nlidspghvdf~sevssas~l~d~alvlvdvveg-v~~qt~~vlrq~~~~~~~- 126 (887)
T KOG0467|consen 68 ----------LHK---------DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEG-VCSQTYAVLRQAWIEGLK- 126 (887)
T ss_pred ----------ccC---------ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccc-cchhHHHHHHHHHHccCc-
Confidence 001 17899999999999999999999999999999999999 899999999877777776
Q ss_pred EEEEEeccCC
Q 039945 250 IIILQNKVDL 259 (531)
Q Consensus 250 iIvviNK~Dl 259 (531)
.++|+||||.
T Consensus 127 ~~lvinkidr 136 (887)
T KOG0467|consen 127 PILVINKIDR 136 (887)
T ss_pred eEEEEehhhh
Confidence 5889999994
No 144
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.72 E-value=1.1e-16 Score=146.77 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|.+++|||||+++|++.... .+....++.+..... +...+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~-----------------------------~~~~~-- 49 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFN---LDSKSTIGVEFATRS-----------------------------IQIDG-- 49 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccceEEEEEE-----------------------------EEECC--
Confidence 68999999999999999999865321 111111111111000 00111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~~ 263 (531)
....+.++||||++.|.......+..+|++|+|+|+++.........++..+... ...|+++|+||+|+....
T Consensus 50 -----~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~ 124 (165)
T cd01868 50 -----KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 124 (165)
T ss_pred -----EEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 1146899999999988777777788999999999997542111112223333222 126799999999987532
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.. ..++...+... ...+++++||++|.|+++++++|.+.+
T Consensus 125 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 125 AV--PTEEAKAFAEK---NGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred cC--CHHHHHHHHHH---cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 11 12223333322 246899999999999999999987643
No 145
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.72 E-value=1.8e-16 Score=143.02 Aligned_cols=156 Identities=16% Similarity=0.199 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+++|||||+++|++..... +..+ |....+.... +.+.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~---~~~~--t~~~~~~~~~---------------------------~~~~--- 45 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDE---NYKS--TIGVDFKSKT---------------------------IEID--- 45 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC---ccCC--ceeeeeEEEE---------------------------EEEC---
Confidence 479999999999999999998654211 1011 1111110000 0000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvviNK~Dl~~~~ 263 (531)
.....+.++|+||+..+.......+..+|++++|+|++..........++..+.... ..|+++++||+|+....
T Consensus 46 ----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 121 (159)
T cd00154 46 ----GKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR 121 (159)
T ss_pred ----CEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc
Confidence 012678999999999998888888899999999999986411112223333333322 36799999999996221
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHH
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIV 305 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~ 305 (531)
. ...+++.++... ...+++.+||++|.|+++++++|.
T Consensus 122 ~--~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 122 Q--VSTEEAQQFAKE---NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred c--ccHHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHh
Confidence 1 122334443332 357899999999999999999986
No 146
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.72 E-value=3e-17 Score=151.39 Aligned_cols=155 Identities=12% Similarity=0.115 Sum_probs=98.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++|.+++|||||+++|.+.... ...-|+...+. .+++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~------~~~~T~~~~~~-----------------------------~~~~----- 40 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM------QPIPTIGFNVE-----------------------------TVEY----- 40 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC------CcCCcCceeEE-----------------------------EEEE-----
Confidence 5799999999999999999865211 00011111000 0011
Q ss_pred ccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHH--cCCceEEEEEeccCCccHH
Q 039945 187 CRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEI--MRLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~--~~~~~iIvviNK~Dl~~~~ 263 (531)
....+.++||||+.++.......+..+|++++|+|+++........+.+. ++.. ....|+++|.||+|+.+..
T Consensus 41 ----~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 116 (169)
T cd04158 41 ----KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 116 (169)
T ss_pred ----CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC
Confidence 12689999999998887777777899999999999976411122223222 2221 2235799999999996432
Q ss_pred HHHHHHHHHHHHHhccc---CCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 264 VAINQHEAIMKFIQGTV---ADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~---~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
. .+++.+++.... .....++++||++|.|+++++++|.+.++
T Consensus 117 ~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 117 S----VEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred C----HHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 1 222333332110 11236889999999999999999987654
No 147
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.72 E-value=9.8e-17 Score=154.03 Aligned_cols=161 Identities=16% Similarity=0.218 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+|+|||||+++|++... ..+....++.+..... +.+++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~---~~~~~~T~~~d~~~~~-----------------------------i~~~~-- 46 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF---GKSYKQTIGLDFFSKR-----------------------------VTLPG-- 46 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC---CCCCCCceeEEEEEEE-----------------------------EEeCC--
Confidence 4789999999999999999986432 1111111222211100 01110
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc-----CCceEEEEEeccCCc
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM-----RLQHIIILQNKVDLI 260 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~-----~~~~iIvviNK~Dl~ 260 (531)
. ....+.||||||++.|.......+..+|++|+|+|++..........++..+... ..+|+++|.||+|+.
T Consensus 47 ~----~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 47 N----LNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred C----CEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 0 1267999999999888777777789999999999998642111222233333322 124689999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
..... ..++..++.+. ...+++++||++|+|+++++++|.+.+.
T Consensus 123 ~~~~v--~~~~~~~~~~~---~~~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 123 HNRTV--KDDKHARFAQA---NGMESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred ccccc--CHHHHHHHHHH---cCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 42211 11222223222 2357899999999999999999987653
No 148
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.72 E-value=5.9e-17 Score=147.60 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=73.8
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHH--cCCceEEEEEeccCCccHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEI--MRLQHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
..+.++||||+..+...+...+..+|++++|+|+++..........+ .+++. ....|+++|+||+|+.......
T Consensus 44 ~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--- 120 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE--- 120 (160)
T ss_pred eEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHH---
Confidence 57999999999888777777789999999999998642111122222 22221 1236799999999996432112
Q ss_pred HHHHHHHh--ccc-CCCCCEEEecccCccchHHHHHHHHc
Q 039945 270 EAIMKFIQ--GTV-ADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 270 ~~i~~~l~--~~~-~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
++...+. .+. ....+++++||++|+|+++++++|.+
T Consensus 121 -~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 121 -EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred -HHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 2222221 111 12457999999999999999999864
No 149
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=6.4e-17 Score=171.85 Aligned_cols=153 Identities=20% Similarity=0.239 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|++|+|||||+|+|++... .+ +.+.|++|++.. ...+.+.|
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~---------~~-----------------v~~~~~~t~d~~-----~~~~~~~~-- 48 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD---------AI-----------------VADTPGVTRDRI-----YGEAEWLG-- 48 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---------ee-----------------eCCCCCCcccce-----EEEEEECC--
Confidence 4799999999999999999998631 11 112355555431 12233333
Q ss_pred cccccceeeEEEEecCChhh----H----HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEecc
Q 039945 186 NCRMKLLRHVSFVDCPGHDI----L----MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~----~----~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~ 257 (531)
..+.||||||+.+ + ...+..++..+|++|+|+|++.+ ......+...+++..+ .|+|+|+||+
T Consensus 49 -------~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~-~~~~~~~~~~~l~~~~-~piilv~NK~ 119 (435)
T PRK00093 49 -------REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAG-LTPADEEIAKILRKSN-KPVILVVNKV 119 (435)
T ss_pred -------cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHcC-CcEEEEEECc
Confidence 6899999999876 2 33345567899999999999886 5655666667777776 5699999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
|+.+.. .. +.++.. .....++++||++|.|+++|+++|....+
T Consensus 120 D~~~~~---~~---~~~~~~---lg~~~~~~iSa~~g~gv~~l~~~I~~~~~ 162 (435)
T PRK00093 120 DGPDEE---AD---AYEFYS---LGLGEPYPISAEHGRGIGDLLDAILEELP 162 (435)
T ss_pred cCccch---hh---HHHHHh---cCCCCCEEEEeeCCCCHHHHHHHHHhhCC
Confidence 976421 11 122211 12235799999999999999999986443
No 150
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.71 E-value=1.3e-16 Score=146.35 Aligned_cols=156 Identities=13% Similarity=0.088 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|.+|+|||||++++++... ..+. --|+. .+|+.. +..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f---~~~~--~~t~~-------------------~~~~~~---------~~~---- 44 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF---RESY--IPTIE-------------------DTYRQV---------ISC---- 44 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---CCCc--CCcch-------------------heEEEE---------EEE----
Confidence 6899999999999999999986431 1000 00110 001000 000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc-----CCceEEEEEeccCCc
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM-----RLQHIIILQNKVDLI 260 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~-----~~~~iIvviNK~Dl~ 260 (531)
......+.++||||+++|.......+..+|++|+|+|.+..........++..++.. ...|+++|.||+|+.
T Consensus 45 ---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 45 ---SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred ---CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 001267899999999988776666778999999999998652111223333334332 224699999999996
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
...... .++...+... ...+++++||++|+|+++++++|.+
T Consensus 122 ~~~~v~--~~~~~~~~~~---~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 122 HKREVS--SNEGAACATE---WNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred ccCeec--HHHHHHHHHH---hCCcEEEeecCCCCCHHHHHHHHHh
Confidence 522211 1111222221 2468999999999999999999974
No 151
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.71 E-value=1.9e-16 Score=145.58 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=76.2
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch-H-HHHHHHHHc-CCceEEEEEeccCCccHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT-S-EHLAAVEIM-RLQHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt-~-e~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
..+.+|||||+..+...+...+..+|++++|+|++.+ ...+. . .++..++.. ...|+++|+||+|+.+........
T Consensus 47 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~-~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~ 125 (166)
T cd01893 47 VPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRP-STLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLE 125 (166)
T ss_pred EEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHH
Confidence 6799999999988777777778999999999998865 22222 1 122333332 235799999999997543221112
Q ss_pred HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 270 EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 270 ~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+++..+.+.+ ....+++++||++|.|++++++.+.+.+
T Consensus 126 ~~~~~~~~~~-~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 126 EEMLPIMNEF-REIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HHHHHHHHHH-hcccEEEEeccccccCHHHHHHHHHHHh
Confidence 2222222111 1124799999999999999999987643
No 152
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.71 E-value=1.7e-16 Score=144.78 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+|+|||||+++|++..... .....-+.+.... . +.+.
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~--~-----------------------------~~~~--- 45 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVK--T-----------------------------LTVD--- 45 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEE--E-----------------------------EEEC---
Confidence 479999999999999999998653210 0010011110000 0 0000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcc-hHHHHHHHHHc---CCceEEEEEeccCCcc
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ-TSEHLAAVEIM---RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~q-t~e~l~~~~~~---~~~~iIvviNK~Dl~~ 261 (531)
.....+.|+||||++.|.......++.+|++++|+|++... ..+ ...++..+... ...|+++|+||+|+..
T Consensus 46 ----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 46 ----GKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRD-TFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred ----CEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHH-HHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 01257899999999988777777788999999999987642 111 12222323222 2356899999999974
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
..... ++..++... ...+++++||++|.|++++++.+.+.
T Consensus 121 ~~~~~---~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 121 REVTR---EEGLKFARK---HNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred cccCH---HHHHHHHHH---cCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 32211 222222222 35789999999999999999998754
No 153
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.71 E-value=1.4e-16 Score=147.14 Aligned_cols=160 Identities=11% Similarity=0.108 Sum_probs=100.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++|.+++|||||++++.+..- ..+... |+...+... .+.+.|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f---~~~~~~--t~~~~~~~~---------------------------~~~~~~--- 46 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF---DKNYKA--TIGVDFEME---------------------------RFEILG--- 46 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCCCC--ceeeEEEEE---------------------------EEEECC---
Confidence 689999999999999999986421 111111 211111000 000111
Q ss_pred ccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HHc--CCceEEEEEeccCCccHH
Q 039945 187 CRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EIM--RLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~~--~~~~iIvviNK~Dl~~~~ 263 (531)
....+.||||||.++|.......++.+|++++|+|++..........++..+ +.. ..+|+++|.||+|+.+..
T Consensus 47 ----~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~ 122 (170)
T cd04108 47 ----VPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA 122 (170)
T ss_pred ----EEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence 1267999999999999887777889999999999997531111122333322 222 124689999999986543
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
......++...+.++ ...+++++||++|.|+++|++.|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~---~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 123 QYALMEQDAIKLAAE---MQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred cccccHHHHHHHHHH---cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 221112222233222 235799999999999999999988654
No 154
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.71 E-value=2.3e-16 Score=144.33 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=75.0
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc-CCceEEEEEeccCCccHHHHHH-HHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM-RLQHIIILQNKVDLIQENVAIN-QHE 270 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~-~~~ 270 (531)
..+.+|||||++.|.......+..+|++++|+|.+..........++..+... ...|+++|+||+|+.+...... ..+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 131 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQ 131 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHH
Confidence 67999999999988777777889999999999997641111112223333322 2357899999999965422111 111
Q ss_pred HHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 271 AIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 271 ~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.+.. ....+++++||++|.|++++++.|.+.+
T Consensus 132 ~~~~------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 132 AFAQ------ANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHHH------HcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 1211 1246799999999999999999998643
No 155
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.71 E-value=1.1e-16 Score=149.96 Aligned_cols=156 Identities=13% Similarity=0.074 Sum_probs=100.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
...+|+++|.+|+|||||+++|.+....... -|.... ...+.+.
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~------~t~~~~-----------------------------~~~~~~~- 59 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ------PTQHPT-----------------------------SEELAIG- 59 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccC------Cccccc-----------------------------eEEEEEC-
Confidence 3488999999999999999999875321000 000000 0011111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHH--HcCCceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVE--IMRLQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~--~~~~~~iIvviNK~Dl~ 260 (531)
+..+.++||||+..+.......+..+|++++|+|+++........+.+ .++. .+...|+++|+||+|+.
T Consensus 60 --------~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 60 --------NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred --------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 268999999999888777777789999999999997641112222222 2222 12235799999999986
Q ss_pred cHHHHHHHHHHHHHHHhc---------ccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 261 QENVAINQHEAIMKFIQG---------TVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~---------~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
.....+ ++.+.+.- .......++++||++|.|+++++++|.+.
T Consensus 132 ~~~~~~----~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 132 YAASED----ELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CCCCHH----HHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 432222 23332210 01134569999999999999999999754
No 156
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.71 E-value=5.3e-16 Score=141.21 Aligned_cols=156 Identities=23% Similarity=0.287 Sum_probs=101.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
..+|+++|.+|+|||||+|+|+|..... . .+.+.+++.. ..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~---------~-----------------~~~~~~~~~~-----~~-------- 43 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISI---------V-----------------SPKPQTTRNR-----IR-------- 43 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEe---------c-----------------cCCCCceece-----EE--------
Confidence 3689999999999999999999863210 0 0001111110 00
Q ss_pred ccccccceeeEEEEecCChhh--------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEec
Q 039945 185 ENCRMKLLRHVSFVDCPGHDI--------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK 256 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~--------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK 256 (531)
..+......+.+|||||+.+ +.......+..+|++++|+|++.. ........+..+...+ .|+++++||
T Consensus 44 -~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~~-~~~iiv~nK 120 (168)
T cd04163 44 -GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP-IGEGDEFILELLKKSK-TPVILVLNK 120 (168)
T ss_pred -EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc-cCchHHHHHHHHHHhC-CCEEEEEEc
Confidence 00111125789999999642 223445567889999999999876 3444445555565555 458999999
Q ss_pred cCCc-cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 257 VDLI-QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 257 ~Dl~-~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
+|+. ......+..+.+... ....+++++|++++.|+++|+++|.+.
T Consensus 121 ~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 121 IDLVKDKEDLLPLLEKLKEL-----GPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred hhccccHHHHHHHHHHHHhc-----cCCCceEEEEeccCCChHHHHHHHHhh
Confidence 9998 344433433333332 234689999999999999999999754
No 157
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.71 E-value=1.5e-16 Score=145.26 Aligned_cols=111 Identities=20% Similarity=0.198 Sum_probs=74.2
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCCccHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
..+.||||||+++|.......++.+|++++|+|.+..........++..+... ...|+|+|.||+|+.+..... .
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~ 126 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVS--R 126 (163)
T ss_pred EEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceec--H
Confidence 56889999999988776666778999999999987642111122222223221 235799999999986532111 1
Q ss_pred HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 270 EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 270 ~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
++...+.+. ...+++++||++|.|+++++++|.+.+
T Consensus 127 ~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 127 EEGQALARQ---WGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 112222222 137899999999999999999997543
No 158
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.70 E-value=2.5e-16 Score=146.50 Aligned_cols=169 Identities=15% Similarity=0.163 Sum_probs=102.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|.+|+|||||+++|++... ..+....+..+.....+. +.. ..|.++.. .
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~~~~~-~~~-----~~~~~~~~-------------~-- 59 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF---NPKFITTVGIDFREKRVV-YNS-----SGPGGTLG-------------R-- 59 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC---CccCCCccceEEEEEEEE-EcC-----cccccccc-------------C--
Confidence 48999999999999999999986421 111111111111100000 000 00110000 0
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCCcc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl~~ 261 (531)
.....+.||||||++.|.......++.+|++++|+|+++.........++..+... ..+|+++|.||+|+.+
T Consensus 60 -----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 60 -----GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred -----CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 01267999999999998887788889999999999997641111112223233222 2367999999999965
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
.... ..+++.++.+. ...+++++||++|.|+++++++|.+.
T Consensus 135 ~~~v--~~~~~~~~~~~---~~~~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 135 QRQV--SEEQAKALADK---YGIPYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred cCcc--CHHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 3211 11222333322 24689999999999999999998754
No 159
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.70 E-value=4e-16 Score=143.74 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=100.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|.+|+|||||++++++.... .+....+..+.... .+.+.+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~---~~~~~~~~~~~~~~-----------------------------~~~~~~ 51 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFD---TQLFHTIGVEFLNK-----------------------------DLEVDG 51 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCC---cCcCCceeeEEEEE-----------------------------EEEECC
Confidence 4589999999999999999999864321 11111111111000 000111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHHc-----CCceEEEEEecc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEIM-----RLQHIIILQNKV 257 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~~-----~~~~iIvviNK~ 257 (531)
....+.||||||+++|.......++.+|++++|+|.+.........++.. ++... ...|+++|.||+
T Consensus 52 -------~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 124 (170)
T cd04116 52 -------HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKN 124 (170)
T ss_pred -------eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECc
Confidence 12578899999999988777778899999999999876411111112221 22211 124689999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
|+..... ..+++.++.+. ....+++++||++|.|++++++.+.+.
T Consensus 125 Dl~~~~~---~~~~~~~~~~~--~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 125 DIPERQV---STEEAQAWCRE--NGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ccccccc---CHHHHHHHHHH--CCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 9863211 12233333332 234589999999999999999998753
No 160
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.70 E-value=1.6e-16 Score=150.87 Aligned_cols=162 Identities=17% Similarity=0.185 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+++|||||+++|++... ..... -|+...+.. +.+ .+..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~---~~~~~--~t~~~d~~~-~~v--------------------------~~~~-- 46 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF---SQHYK--ATIGVDFAL-KVI--------------------------EWDP-- 46 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC---CCCCC--CceeEEEEE-EEE--------------------------EECC--
Confidence 4799999999999999999986421 11111 121111100 000 0000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH------cCCceEEEEEeccCC
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI------MRLQHIIILQNKVDL 259 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~------~~~~~iIvviNK~Dl 259 (531)
.....+.||||||++.|...+...++.+|++|+|+|.+..........++..+.. ....|+|+|.||+|+
T Consensus 47 ----~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl 122 (201)
T cd04107 47 ----NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDL 122 (201)
T ss_pred ----CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCc
Confidence 0125789999999998877777788999999999998764111111112222221 123479999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+... ...+++.++.+. ....+++++||++|.|+++++++|.+.+.
T Consensus 123 ~~~~~--~~~~~~~~~~~~--~~~~~~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 123 KKRLA--KDGEQMDQFCKE--NGFIGWFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred ccccc--cCHHHHHHHHHH--cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 73211 112233343332 12358999999999999999999987653
No 161
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.70 E-value=1.5e-16 Score=145.62 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=75.1
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHH-HHHc--CCceEEEEEeccCCccHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAA-VEIM--RLQHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~-~~~~--~~~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
..+.+|||||+++|.......+..+|++++|+|++..........+... .+.. ...|+++|.||+|+....... .
T Consensus 48 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~--~ 125 (164)
T smart00173 48 CLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVS--T 125 (164)
T ss_pred EEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEc--H
Confidence 5788999999999887777778899999999999764111111122222 2221 135799999999987532111 1
Q ss_pred HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 270 EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 270 ~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+...++.+. ...+++++||++|.|+++|+++|.+.+.
T Consensus 126 ~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 126 EEGKELARQ---WGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHH---cCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 122222222 2378999999999999999999986543
No 162
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.70 E-value=1.7e-16 Score=145.77 Aligned_cols=158 Identities=19% Similarity=0.205 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|++++|||||+++|.+... ..+.. -|+...+... .+.+.+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~---~~~~~--~t~~~~~~~~---------------------------~~~~~~-- 48 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF---MADCP--HTIGVEFGTR---------------------------IIEVNG-- 48 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCCCC--cccceeEEEE---------------------------EEEECC--
Confidence 6899999999999999999986421 11100 1111111000 000011
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~~ 263 (531)
....+.+|||||++.|.......++.+|++|+|+|.++........+++..+... ...|+++|.||+|+....
T Consensus 49 -----~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 49 -----QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR 123 (166)
T ss_pred -----EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 1257899999999998888888889999999999998641111122233333222 235799999999997542
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
.. ..++..++.+. ...+++++||++|.|++++++.|...
T Consensus 124 ~~--~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 124 DV--TYEEAKQFADE---NGLLFLECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred Cc--CHHHHHHHHHH---cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 21 11223333332 24689999999999999999888754
No 163
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=1.5e-16 Score=167.56 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=103.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+-...|+|+|.||||||||+|+|++... . +.+.|+||+.. ....+.+.
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akp-----------k----------------IadypfTTl~P-----~lGvv~~~ 204 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKP-----------K----------------IADYPFTTLVP-----NLGVVQAG 204 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCc-----------c----------------ccccCcccccc-----eEEEEEEC
Confidence 4446899999999999999999997531 0 12235555542 11122222
Q ss_pred CCccccccceeeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCCCCC--CCcc-hHH-H---H-HHHH----
Q 039945 183 GFENCRMKLLRHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAANESC--PQPQ-TSE-H---L-AAVE---- 243 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~~~~--~~~q-t~e-~---l-~~~~---- 243 (531)
...|+|+||||.. ......++.+..||++|+|||++... ..+. ..+ . + .+..
T Consensus 205 ---------~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~ 275 (500)
T PRK12296 205 ---------DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDG 275 (500)
T ss_pred ---------CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccc
Confidence 2689999999952 12344566778899999999997420 1111 111 1 1 1111
Q ss_pred -----HcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 244 -----IMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 244 -----~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+..+|+|||+||+|+++.... .+.+.+.++. ...+++++||++++|+++|+++|.+.+.
T Consensus 276 ~~~~~~l~~kP~IVVlNKiDL~da~el---~e~l~~~l~~---~g~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 276 DLGLGDLAERPRLVVLNKIDVPDAREL---AEFVRPELEA---RGWPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred cchhhhhcCCCEEEEEECccchhhHHH---HHHHHHHHHH---cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2233679999999999754332 2233333332 2468999999999999999999987664
No 164
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.70 E-value=1.8e-16 Score=147.13 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=98.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH-CCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~-g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
..++|+++|.+++|||||+++|. |.... .. -|+...+. .+.+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-----~~--~t~~~~~~-----------------------------~~~~- 54 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVT-----TI--PTIGFNVE-----------------------------TVTY- 54 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCC-----cC--CccccceE-----------------------------EEEE-
Confidence 34899999999999999999995 32210 00 01111000 0001
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HH--cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EI--MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~--~~~~~iIvviNK~Dl 259 (531)
....+.|+||||+..|.......+..+|++|+|+|+++........+.+..+ .. ....|+++|.||+|+
T Consensus 55 --------~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 126 (175)
T smart00177 55 --------KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126 (175)
T ss_pred --------CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence 1268999999999988877777789999999999998642122233333222 21 223579999999999
Q ss_pred ccHHHHHHHHHHHHHHHh--cccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 260 IQENVAINQHEAIMKFIQ--GTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~--~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.+..... ++.+.+. ......+.++++||++|.|+++++++|.+.+
T Consensus 127 ~~~~~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 127 PDAMKAA----EITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred ccCCCHH----HHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 7532111 2222221 1112234577899999999999999998653
No 165
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.70 E-value=1.4e-16 Score=148.79 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=99.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|..++|||||+++|....... ..-|+...+ ..++..
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~------~~pt~g~~~-----------------------------~~~~~~- 59 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNV-----------------------------ETVEYK- 59 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc------ccCCcceeE-----------------------------EEEEEC-
Confidence 34799999999999999999997421100 000110000 001111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHH--HcCCceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVE--IMRLQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~--~~~~~~iIvviNK~Dl~ 260 (531)
...+.|+||||++.|.......++.+|++|+|+|+++..........+ .++. .....|++++.||+|+.
T Consensus 60 --------~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 60 --------NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred --------CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 268999999999988877777789999999999998642111112222 1221 12346799999999987
Q ss_pred cHHHHHHHHHHHHHHHhc--ccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQG--TVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~--~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... +++.+.+.- .......++++||++|+|+++++++|.+.+
T Consensus 132 ~~~~~----~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 132 NAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCH----HHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 64322 333333321 111223467899999999999999998654
No 166
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.70 E-value=1.2e-16 Score=147.71 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=98.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+.++|+++|++|+|||||+++|.+...... ....|+++ ..+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~--~~t~g~~~---------------------------------~~i~~~- 56 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHI--TPTQGFNI---------------------------------KTVQSD- 56 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCccc--CCCCCcce---------------------------------EEEEEC-
Confidence 358899999999999999999997532100 00011100 011111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHH--cCCceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEI--MRLQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~--~~~~~iIvviNK~Dl~ 260 (531)
...+.++||||+..+.......+..+|++++|+|++...........+ .++.. ....|+++++||+|+.
T Consensus 57 --------~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 57 --------GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred --------CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 167999999999888777777789999999999997531111122222 11111 1225699999999997
Q ss_pred cHHHHHHHHHHHHHHHh--cccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 261 QENVAINQHEAIMKFIQ--GTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~--~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
+....++ +.+.+. .......+++++||++|+|+++++++|.+
T Consensus 129 ~~~~~~~----i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 129 TAAPAEE----IAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred cCCCHHH----HHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 5432222 222221 11112345789999999999999999974
No 167
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.70 E-value=1.7e-16 Score=148.43 Aligned_cols=161 Identities=18% Similarity=0.162 Sum_probs=97.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||++++++.... .+. -|........+ +.+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~---~~~---~t~~~~~~~~~---------------------------~~~~-- 47 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV---NTV---PTKGFNTEKIK---------------------------VSLG-- 47 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC---CcC---CccccceeEEE---------------------------eecc--
Confidence 378999999999999999999864211 000 01101000000 0000
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HH---HHcCCceEEEEEeccCCc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AV---EIMRLQHIIILQNKVDLI 260 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~---~~~~~~~iIvviNK~Dl~ 260 (531)
......+.+|||||++.|.......+..+|++++|+|++...........+. +. ...+ .|+++|+||+|+.
T Consensus 48 ----~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~-~p~iiv~NK~D~~ 122 (183)
T cd04152 48 ----NSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQG-VPVLVLANKQDLP 122 (183)
T ss_pred ----CCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCC-CcEEEEEECcCcc
Confidence 0011679999999999887766666789999999999876411111111111 11 2223 5799999999986
Q ss_pred cHHHHHHHHHHHHHHHh--ccc-CCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 261 QENVAINQHEAIMKFIQ--GTV-ADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~--~~~-~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
..... +++..++. ... ....+++++||++|+|+++|+++|.+.+.
T Consensus 123 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 123 NALSV----SEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ccCCH----HHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 42111 12222221 110 12356899999999999999999886653
No 168
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=1.6e-16 Score=177.60 Aligned_cols=157 Identities=15% Similarity=0.195 Sum_probs=109.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
....+|+|+|++|+|||||+|+|++... .+ +.+.|++|++.. ....+|.
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~---------~i-----------------v~~~pGvT~d~~-----~~~~~~~ 321 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRRE---------AV-----------------VEDTPGVTRDRV-----SYDAEWA 321 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCc---------ee-----------------ecCCCCeeEEEE-----EEEEEEC
Confidence 3457899999999999999999998531 11 122355555431 1112232
Q ss_pred CCccccccceeeEEEEecCChh--------hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEE
Q 039945 183 GFENCRMKLLRHVSFVDCPGHD--------ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQ 254 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~--------~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvvi 254 (531)
+ ..+.||||||.. .+...+..++..+|++|+|+|++.+ ......+....++..+ +|+|+|+
T Consensus 322 ~---------~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~-~~~~d~~i~~~Lr~~~-~pvIlV~ 390 (712)
T PRK09518 322 G---------TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG-LTSTDERIVRMLRRAG-KPVVLAV 390 (712)
T ss_pred C---------EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHhcC-CCEEEEE
Confidence 2 689999999954 3556666778999999999999987 5666666667777666 5699999
Q ss_pred eccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 255 NKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 255 NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
||+|+..... . ..++.. ......+++||++|.|+++|+++|.+.++.
T Consensus 391 NK~D~~~~~~---~---~~~~~~---lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 391 NKIDDQASEY---D---AAEFWK---LGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ECcccccchh---h---HHHHHH---cCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 9999864321 1 111111 112245799999999999999999987764
No 169
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=3.6e-16 Score=143.75 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=100.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
...+|+++|++|+|||||+++|++... . ...+.|+...+... .+.+.+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~---~--~~~~~t~~~~~~~~---------------------------~~~~~~ 53 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLF---P--PGQGATIGVDFMIK---------------------------TVEIKG 53 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCC---C--CCCCCceeeEEEEE---------------------------EEEECC
Confidence 458999999999999999999985321 1 11222221111100 001111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCc-chHHHHHHHHHcC--CceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQP-QTSEHLAAVEIMR--LQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~-qt~e~l~~~~~~~--~~~iIvviNK~Dl~ 260 (531)
....+.++||||+++|.......+..+|++++|+|++.+ ... ....++..+..+. ..|+++|+||+|+.
T Consensus 54 -------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 54 -------EKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE-ESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred -------EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 114688999999999988888888999999999998764 111 1122333333221 24579999999987
Q ss_pred cHHHHH-HHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 261 QENVAI-NQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 261 ~~~~~~-~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
+..... ...+.+.+. ...+++++||++|.|+++++++|.+.
T Consensus 126 ~~~~i~~~~~~~~~~~------~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 126 ERREVSQQRAEEFSDA------QDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred cccccCHHHHHHHHHH------cCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 533211 222222221 23689999999999999999998754
No 170
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.70 E-value=1.7e-16 Score=149.11 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=99.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
...+|+++|++|+|||||+++|.+..... ...|... ....+.+.+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~------~~~T~~~-----------------------------~~~~i~~~~ 62 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ------HVPTLHP-----------------------------TSEELTIGN 62 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc------cCCccCc-----------------------------ceEEEEECC
Confidence 34789999999999999999998753110 0001100 001112222
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHH--cCCceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEI--MRLQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~--~~~~~iIvviNK~Dl~ 260 (531)
..+.++||||+.++.......+..+|++++|+|+++........+.+. ++.. ....|+++++||+|+.
T Consensus 63 ---------~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 63 ---------IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred ---------EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 678999999999887766777899999999999976411111222222 2221 1225799999999987
Q ss_pred cHHHHHHHHHHHHHHHhcc-------------cCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 261 QENVAINQHEAIMKFIQGT-------------VADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~-------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
..... +++.+.+... .....+++++||++|+|+++++++|...
T Consensus 134 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 134 GAVSE----EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CCcCH----HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 43222 2333333211 0123568999999999999999999754
No 171
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.70 E-value=2.7e-16 Score=143.47 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=74.8
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHH--cCCceEEEEEeccCCccHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEI--MRLQHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
..+.++||||+.+|.......++.+|.+++|+|.+...........+. +... ....|+++|+||+|+...... ..
T Consensus 48 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~--~~ 125 (164)
T cd04139 48 VQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQV--SS 125 (164)
T ss_pred EEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccccc--CH
Confidence 579999999999998888888899999999999875310111122222 2222 123569999999999752110 11
Q ss_pred HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 270 EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 270 ~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.+...+.+. ...+++++||++|.|+++|++.|.+.+
T Consensus 126 ~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 126 EEAANLARQ---WGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred HHHHHHHHH---hCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 112222221 236899999999999999999987654
No 172
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.70 E-value=2.2e-16 Score=149.66 Aligned_cols=159 Identities=14% Similarity=0.209 Sum_probs=101.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
.|+++|..++|||||+.++.... +..+.. .|+...+... .+.+.|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~---f~~~~~--~Ti~~~~~~~---------------------------~i~~~~--- 46 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT---FCEACK--SGVGVDFKIK---------------------------TVELRG--- 46 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC---CCCcCC--CcceeEEEEE---------------------------EEEECC---
Confidence 58999999999999999998532 111111 2222222100 011111
Q ss_pred ccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccHHH
Q 039945 187 CRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQENV 264 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~~~ 264 (531)
....+.||||||++.|...+...++.+|++|+|+|.++.........++..+... ...|+|+|.||+|+.....
T Consensus 47 ----~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~ 122 (202)
T cd04120 47 ----KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE 122 (202)
T ss_pred ----EEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence 1267899999999999887778889999999999998752112222333334332 2357999999999964322
Q ss_pred HHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 265 AINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 265 ~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+. .++..++.+. ....+++++||++|.||++++++|.+.+
T Consensus 123 v~--~~~~~~~a~~--~~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 123 IS--RQQGEKFAQQ--ITGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred cC--HHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 11 1122222222 1246799999999999999999987644
No 173
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.70 E-value=2.3e-16 Score=148.50 Aligned_cols=113 Identities=18% Similarity=0.213 Sum_probs=77.4
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEEEeccCCccHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIILQNKVDLIQENVAINQHE 270 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~~~~ 270 (531)
..+.||||||+..|.......+..+|++|+|+|++..........++..+.... ..|+++|+||+|+...... ..+
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~--~~~ 127 (191)
T cd04112 50 VKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVV--KRE 127 (191)
T ss_pred EEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcccc--CHH
Confidence 578999999999887777777889999999999976421111223333333332 3579999999999642111 011
Q ss_pred HHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 271 AIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 271 ~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+...+... ...+++++||++|.|+++|+++|.+.+..
T Consensus 128 ~~~~l~~~---~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 128 DGERLAKE---YGVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred HHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 22222221 24689999999999999999999876643
No 174
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.70 E-value=2.7e-16 Score=144.81 Aligned_cols=160 Identities=17% Similarity=0.149 Sum_probs=100.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
..+|+++|.+|+|||||+++|++..... ......+.+.... . +.+.+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~-~~~~t~~~~~~~~--~-----------------------------~~~~~- 50 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGAR--M-----------------------------ITIDG- 50 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEE--E-----------------------------EEECC-
Confidence 4799999999999999999998653110 0000011111000 0 00111
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccH
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQE 262 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~ 262 (531)
....+.||||||+++|.......+..+|++|+|+|++..........++..++.. ...|+|+|.||+|+...
T Consensus 51 ------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 51 ------KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124 (168)
T ss_pred ------EEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 1157999999999988877777889999999999998541111122233333322 23579999999999743
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
... ..++...+... ...+++++||++|.|++++++++.+.+
T Consensus 125 ~~~--~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 125 REV--SYEEGEAFAKE---HGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred cCC--CHHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 211 11223333322 246799999999999999999887654
No 175
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.70 E-value=2e-16 Score=147.79 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=99.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|+++|.+++|||||++++........ . -|+...+. .+..
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~--~----~T~~~~~~-----------------------------~~~~- 58 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTT--I----PTIGFNVE-----------------------------TVEY- 58 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc--C----CccccceE-----------------------------EEEE-
Confidence 3458999999999999999999963211100 0 01111000 0011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHH--cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEI--MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~--~~~~~iIvviNK~Dl 259 (531)
....+.++||||++.|.......+..+|++|+|+|+++........+.+ .++.. +..+|+++|.||.|+
T Consensus 59 --------~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 130 (182)
T PTZ00133 59 --------KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130 (182)
T ss_pred --------CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCC
Confidence 1268999999999988877777889999999999997531111122222 22221 234679999999998
Q ss_pred ccHHHHHHHHHHHHHHHhc--ccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 260 IQENVAINQHEAIMKFIQG--TVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~--~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.+..... ++.+.+.- .....++++++||++|.|+++++++|.+.+
T Consensus 131 ~~~~~~~----~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 131 PNAMSTT----EVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred CCCCCHH----HHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 6532211 22222211 111234577899999999999999998644
No 176
>PRK11058 GTPase HflX; Provisional
Probab=99.70 E-value=1.7e-16 Score=166.16 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
..|+++|.+|+|||||+|+|++.... +.+.|++|++... ..+.+.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~---------------------------v~~~~~tTld~~~-----~~i~l~~-- 243 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY---------------------------AADQLFATLDPTL-----RRIDVAD-- 243 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee---------------------------eccCCCCCcCCce-----EEEEeCC--
Confidence 58999999999999999999985310 1123444544321 1233332
Q ss_pred cccccceeeEEEEecCChhhH--------HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEEEe
Q 039945 186 NCRMKLLRHVSFVDCPGHDIL--------MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIILQN 255 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~--------~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvviN 255 (531)
...+.|+||||..+. ...++..+..||++|+|+|++++....+......++..++ ..|+++|+|
T Consensus 244 ------~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~N 317 (426)
T PRK11058 244 ------VGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMN 317 (426)
T ss_pred ------CCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 137899999996221 2334566789999999999987521111111223344333 357899999
Q ss_pred ccCCccHHHHHHHHHHHHHHHhcccCCCCC-EEEecccCccchHHHHHHHHccCC
Q 039945 256 KVDLIQENVAINQHEAIMKFIQGTVADGAP-VVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 256 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
|+|+.+.... . +... . ...+ ++++||++|.|+++|+++|.+.+.
T Consensus 318 KiDL~~~~~~--~---~~~~-~----~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 318 KIDMLDDFEP--R---IDRD-E----ENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred cccCCCchhH--H---HHHH-h----cCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 9999753211 1 1110 0 1223 588999999999999999998764
No 177
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.69 E-value=4.8e-16 Score=148.98 Aligned_cols=167 Identities=17% Similarity=0.218 Sum_probs=106.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++||++|.||+|||||.|.+.|.... . ++.++-|||.- ..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~--------~------------------vS~K~~TTr~~-----------il 112 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVS--------A------------------VSRKVHTTRHR-----------IL 112 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccc--------c------------------ccccccceeee-----------ee
Confidence 55689999999999999999999987531 0 12233333331 11
Q ss_pred CCccccccceeeEEEEecCC------hhh------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceE
Q 039945 183 GFENCRMKLLRHVSFVDCPG------HDI------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHI 250 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG------~~~------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~i 250 (531)
+.......++.|+|||| |+. +..+...++..||++++|+|++.. ..+.....+..++....-|-
T Consensus 113 ---gi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~t-r~~l~p~vl~~l~~ys~ips 188 (379)
T KOG1423|consen 113 ---GIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASAT-RTPLHPRVLHMLEEYSKIPS 188 (379)
T ss_pred ---EEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCC-cCccChHHHHHHHHHhcCCc
Confidence 22223347999999999 222 334556788999999999999853 23333344444444444457
Q ss_pred EEEEeccCCccHHHHHH-H------------HHHHHHHHhcc-----------cCCCCCEEEecccCccchHHHHHHHHc
Q 039945 251 IILQNKVDLIQENVAIN-Q------------HEAIMKFIQGT-----------VADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 251 IvviNK~Dl~~~~~~~~-~------------~~~i~~~l~~~-----------~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
|+|+||+|......+.- . .-++++..... +.....+|++||++|+||++|.++|..
T Consensus 189 ~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLms 268 (379)
T KOG1423|consen 189 ILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMS 268 (379)
T ss_pred eeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHh
Confidence 99999999875433211 1 11111111100 011234899999999999999999997
Q ss_pred cCCC
Q 039945 307 KIPI 310 (531)
Q Consensus 307 ~l~~ 310 (531)
..|.
T Consensus 269 qa~~ 272 (379)
T KOG1423|consen 269 QAPP 272 (379)
T ss_pred cCCC
Confidence 7654
No 178
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.69 E-value=2e-16 Score=145.54 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+++|||||+++++.... .. ...-|+...+....+. ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~---~~--~~~~t~~~~~~~~~~~---------------------------~~--- 45 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF---EK--KYVATLGVEVHPLDFH---------------------------TN--- 45 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC---CC--CCCCceeeEEEEEEEE---------------------------EC---
Confidence 3799999999999999999974321 11 1111221111110000 00
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch-HHHHHHHHH-cCCceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT-SEHLAAVEI-MRLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~~~-~~~~~iIvviNK~Dl~~~~ 263 (531)
.....+.+|||||+++|.......+..+|++|+|+|.+... ..+. ..++..+.. .+..|+++|.||+|+....
T Consensus 46 ----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~ 120 (166)
T cd00877 46 ----RGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRV-TYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK 120 (166)
T ss_pred ----CEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc
Confidence 01267899999999887655555678899999999998652 2211 222233322 2246799999999997322
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
. .. +..++.+ ....+++++||++|.|+++++++|.+.+.
T Consensus 121 ~-~~---~~~~~~~---~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 121 V-KA---KQITFHR---KKNLQYYEISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred C-CH---HHHHHHH---HcCCEEEEEeCCCCCChHHHHHHHHHHHH
Confidence 1 11 1112221 24578999999999999999999987653
No 179
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.69 E-value=4.2e-16 Score=147.82 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=103.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|.+|+|||||+++|++... ..+.. -|+...+... .+.+.|
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~---~~~~~--~t~~~~~~~~---------------------------~~~~~~ 52 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF---SGSYI--TTIGVDFKIR---------------------------TVEING 52 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC---CCCcC--ccccceeEEE---------------------------EEEECC
Confidence 358999999999999999999986431 11111 1111111000 001111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH-cCCceEEEEEeccCCccH
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI-MRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~-~~~~~iIvviNK~Dl~~~ 262 (531)
....+.||||||++.|.......+..+|++++|+|+++.........++..+.. ....|+++|+||+|+...
T Consensus 53 -------~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 53 -------ERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER 125 (199)
T ss_pred -------EEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 125789999999998887777788899999999999864211112233333322 334578999999999753
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
... ..++..++.+. ...+++++||++|.||++|+++|.+.+.
T Consensus 126 ~~~--~~~~~~~~~~~---~~~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 126 KVV--ETEDAYKFAGQ---MGISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred ccc--CHHHHHHHHHH---cCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 221 11222333322 2468999999999999999999986553
No 180
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.68 E-value=2e-16 Score=142.95 Aligned_cols=112 Identities=17% Similarity=0.197 Sum_probs=75.0
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HH--cCCceEEEEEeccCCccHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EI--MRLQHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~--~~~~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
..+.++||||++.|...+...+..+|++++|+|++......+..+.+..+ .. ....|+++|+||+|+.+........
T Consensus 44 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 123 (159)
T cd04159 44 VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELI 123 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHH
Confidence 67999999999998888888889999999999997631112222222222 11 1235689999999987643222222
Q ss_pred HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 270 EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 270 ~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
+.+. +........+++++|+++|.|+++++++|.+
T Consensus 124 ~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 124 EQMN--LKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHhC--cccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 2211 1111123467899999999999999999874
No 181
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.68 E-value=4.3e-16 Score=142.64 Aligned_cols=110 Identities=18% Similarity=0.201 Sum_probs=74.4
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHH-HHHc--CCceEEEEEeccCCccHHHH-HHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAA-VEIM--RLQHIIILQNKVDLIQENVA-INQ 268 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~-~~~~--~~~~iIvviNK~Dl~~~~~~-~~~ 268 (531)
..+.||||||++.|.......+..+|++++|+|.+.........+++.. .... ...|+++|.||+|+...... ...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 128 (164)
T cd04175 49 CMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQ 128 (164)
T ss_pred EEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHH
Confidence 5688999999998887777788999999999998754111112222222 2211 23579999999999643211 111
Q ss_pred HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 269 HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 269 ~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.+++.+. ...+++++||++|.|+++++++|.+.+
T Consensus 129 ~~~~~~~------~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 129 GQNLARQ------WGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHHHHH------hCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 2222222 236899999999999999999998654
No 182
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.68 E-value=2.9e-16 Score=145.10 Aligned_cols=110 Identities=24% Similarity=0.290 Sum_probs=71.3
Q ss_pred eeEEEEecCChhh-------HHHHHHHhccccCceEEEEeCCCCC------CCcchHHHHHHHHH---------cCCceE
Q 039945 193 RHVSFVDCPGHDI-------LMATMLNGAAIMDGALLLIAANESC------PQPQTSEHLAAVEI---------MRLQHI 250 (531)
Q Consensus 193 ~~i~liDtPG~~~-------~~~~~~~~l~~aD~~llVvDa~~~~------~~~qt~e~l~~~~~---------~~~~~i 250 (531)
..+.|+||||+.+ +...+...+..+|++++|+|++... ...+...+...+.. +...|+
T Consensus 44 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 123 (176)
T cd01881 44 ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPV 123 (176)
T ss_pred CeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCe
Confidence 6899999999732 2234456678899999999998641 01111112222211 123679
Q ss_pred EEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 251 IILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 251 IvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
++|+||+|+.......... ...... ....+++++||++|.|+++|+++|...
T Consensus 124 ivv~NK~Dl~~~~~~~~~~--~~~~~~---~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 124 IYVLNKIDLDDAEELEEEL--VRELAL---EEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEEEchhcCchhHHHHHH--HHHHhc---CCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 9999999998654433321 111111 345689999999999999999998743
No 183
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.68 E-value=2.7e-16 Score=141.41 Aligned_cols=152 Identities=23% Similarity=0.312 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
+||+++|++|+|||||+++|++... ..+...+++.+..... +.+.+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~---~~~~~~~~~~~~~~~~-----------------------------~~~~~-- 47 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF---ITEYKPGTTRNYVTTV-----------------------------IEEDG-- 47 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC---cCcCCCCceeeeeEEE-----------------------------EEECC--
Confidence 6899999999999999999997641 2222223333221100 00110
Q ss_pred cccccceeeEEEEecCChhhHHHHH-------HHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccC
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATM-------LNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVD 258 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~-------~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~D 258 (531)
....+.+|||||+.++.... ...+..+|.+++|+|+... ...........+.. + .|+++++||+|
T Consensus 48 -----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~-~~~~~~~~~~~~~~-~-~p~ivv~nK~D 119 (161)
T TIGR00231 48 -----KTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEI-LEKQTKEIIHHAES-N-VPIILVGNKID 119 (161)
T ss_pred -----EEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhH-hHHHHHHHHHhccc-C-CcEEEEEEccc
Confidence 01578999999988774333 3333445555555554432 11222222222222 3 56999999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHH
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIV 305 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~ 305 (531)
+.... ......+.+.. ....+++++||++|.|+++++++|.
T Consensus 120 ~~~~~----~~~~~~~~~~~--~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 120 LRDAK----LKTHVAFLFAK--LNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CCcch----hhHHHHHHHhh--ccCCceEEeecCCCCCHHHHHHHhh
Confidence 98653 12222222322 2345799999999999999999875
No 184
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.68 E-value=7.1e-16 Score=140.28 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|.+++|||||+++|++.... ......++...... .+.+.+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~-----------------------------~~~~~~-- 46 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN---EKHESTTQASFFQK-----------------------------TVNIGG-- 46 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC---CCcCCccceeEEEE-----------------------------EEEECC--
Confidence 47999999999999999999865321 00011111111000 000000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH-cC-CceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI-MR-LQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~-~~-~~~iIvviNK~Dl~~~~ 263 (531)
....+.+|||||+..+.......+..+|++++|+|.+++....+...++..+.. .. ..|+++|+||+|+....
T Consensus 47 -----~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 47 -----KRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR 121 (162)
T ss_pred -----EEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 114789999999988776666667899999999999865211112222222222 22 35799999999987432
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
... .+++.++.+. ...+++++||++|.|+++++++|.+.
T Consensus 122 ~~~--~~~~~~~~~~---~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 122 VVS--KSEAEEYAKS---VGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred CCC--HHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 211 1222223221 24678999999999999999999754
No 185
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.68 E-value=4.2e-16 Score=173.70 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|++|+|||||+|+|+|... ......|.|++... ..+.+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~---~vgn~pGvTve~k~-----------------------------g~~~~~--- 48 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ---RVGNWAGVTVERKE-----------------------------GQFSTT--- 48 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCCceEeeEE-----------------------------EEEEcC---
Confidence 6899999999999999999998632 11111233332211 111122
Q ss_pred cccccceeeEEEEecCChhhHHH--------HH--HHh--ccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEE
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMA--------TM--LNG--AAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIIL 253 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~--------~~--~~~--l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvv 253 (531)
...+.++||||+.++.. +. ... ...+|++++|+|++.. . +.......+..++. |+++|
T Consensus 49 ------~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--e-r~l~l~~ql~e~gi-PvIvV 118 (772)
T PRK09554 49 ------DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--E-RNLYLTLQLLELGI-PCIVA 118 (772)
T ss_pred ------ceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc--h-hhHHHHHHHHHcCC-CEEEE
Confidence 26899999999876531 11 111 2478999999999864 1 12233345556774 59999
Q ss_pred EeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 254 QNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 254 iNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+||+|+.+........+++.+.+ ..|++++||++|+|+++|++.+.+..
T Consensus 119 lNK~Dl~~~~~i~id~~~L~~~L------G~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 119 LNMLDIAEKQNIRIDIDALSARL------GCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEchhhhhccCcHHHHHHHHHHh------CCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 99999875444344445555543 46999999999999999999998654
No 186
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.68 E-value=4.6e-16 Score=142.25 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=74.2
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCCccHHHHH-HH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDLIQENVAI-NQ 268 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~-~~ 268 (531)
..+.||||||++.|.......+..+|++++|+|.++.....+..+++..+... ...|+++|.||+|+....... ..
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~ 128 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAE 128 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHH
Confidence 46889999999988777777778999999999997641111222333333222 235799999999986432111 11
Q ss_pred HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 269 HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 269 ~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
...+.+ . ...+++++||++|.|+++++++|.+.+
T Consensus 129 ~~~~~~---~---~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 129 GRALAE---E---WGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHHH---H---hCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 122222 1 135899999999999999999998644
No 187
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.68 E-value=7.9e-16 Score=143.77 Aligned_cols=160 Identities=14% Similarity=0.188 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|..++|||||++++++..- ..+... |+...+... .+.+.|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f---~~~~~~--T~g~~~~~~---------------------------~i~~~~-- 46 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF---DEDYIQ--TLGVNFMEK---------------------------TISIRG-- 46 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC---CCCCCC--ccceEEEEE---------------------------EEEECC--
Confidence 4789999999999999999975421 111111 111111000 001111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccH-
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQE- 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~- 262 (531)
....+.+|||+|++.|.......+..+|++++|+|.++........+++..+... ...| |+|.||+|+...
T Consensus 47 -----~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~ 120 (182)
T cd04128 47 -----TEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADL 120 (182)
T ss_pred -----EEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccc
Confidence 1257999999999988776677789999999999997642111122333333332 2244 678999999631
Q ss_pred --HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 263 --NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 263 --~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.......++..++.+. .+.+++++||++|.|+++|+++|.+.+
T Consensus 121 ~~~~~~~~~~~~~~~a~~---~~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 121 PPEEQEEITKQARKYAKA---MKAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred cchhhhhhHHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1111122333333332 236899999999999999999988655
No 188
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.68 E-value=6.3e-16 Score=145.12 Aligned_cols=161 Identities=11% Similarity=0.156 Sum_probs=104.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|..++|||||+.++.... +..+....++.+..... +.+.+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~---~~~~~~~t~~~~~~~~~-----------------------------i~~~~ 52 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGS---TESPYGYNMGIDYKTTT-----------------------------ILLDG 52 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC---CCCCCCCcceeEEEEEE-----------------------------EEECC
Confidence 35899999999999999999998532 11111111221111000 00111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH-cCCceEEEEEeccCCccH
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI-MRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~-~~~~~iIvviNK~Dl~~~ 262 (531)
....+.||||||+++|.......++.+|++|||+|.+..........++..+.. ....|+|+|.||+|+...
T Consensus 53 -------~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~ 125 (189)
T cd04121 53 -------RRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFK 125 (189)
T ss_pred -------EEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhc
Confidence 126799999999999887777777999999999999865222223333333332 234579999999999642
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
..+ ..++.+++.+. .+.+++++||++|.|+++++++|.+.+
T Consensus 126 ~~v--~~~~~~~~a~~---~~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 126 RQV--ATEQAQAYAER---NGMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred cCC--CHHHHHHHHHH---cCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 111 12233333332 346899999999999999999998644
No 189
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.68 E-value=4.4e-16 Score=147.49 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=75.2
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHHc--CCceEEEEEeccCCccHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEIM--RLQHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~~--~~~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
..+.||||||+.+|.......+..+|++|+|+|+++.........++. +.... ...|+|+|+||+|+........ .
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~-~ 125 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVP-A 125 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccccc-H
Confidence 578999999999887766677889999999999976421111112222 22211 2357999999999965311111 1
Q ss_pred HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 270 EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 270 ~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+...+.... ....+++++||++|.|+++|+++|.+.+..
T Consensus 126 ~~~~~~~~~--~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 126 KDALSTVEL--DWNCGFVETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred HHHHHHHHh--hcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 111111110 124689999999999999999999876653
No 190
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.68 E-value=2.6e-16 Score=148.08 Aligned_cols=112 Identities=15% Similarity=0.149 Sum_probs=75.9
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc-----CCceEEEEEeccCCccHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM-----RLQHIIILQNKVDLIQENVAIN 267 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~-----~~~~iIvviNK~Dl~~~~~~~~ 267 (531)
..+.||||||+++|.......++.+|++|+|+|.+..........++..+... ...|+|+|.||+|+.......
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~- 125 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS- 125 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccC-
Confidence 46899999999998887777889999999999987641111122333333221 235789999999996422211
Q ss_pred HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 268 QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 268 ~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.++..++... ...+++++||++|.|+++++++|.+.+.
T Consensus 126 -~~~~~~~~~~---~~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 126 -TEEGAALARR---LGCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred -HHHHHHHHHH---hCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1112222221 2358999999999999999999986554
No 191
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.67 E-value=7.6e-16 Score=139.78 Aligned_cols=110 Identities=20% Similarity=0.213 Sum_probs=76.8
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHHcC--CceEEEEEeccCCccHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEIMR--LQHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~~~--~~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
..+.++|+||+.++.......+..+|++++|+|.+......+....+. +..... ..|+++|+||+|+...... ..
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~ 124 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQV--SK 124 (160)
T ss_pred EEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccccee--cH
Confidence 578999999999887777778889999999999876421112223332 222222 4679999999998752211 12
Q ss_pred HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 270 EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 270 ~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
+++..+.+. ...+++++||++|.|+++++++|.+.
T Consensus 125 ~~~~~~~~~---~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 125 EEGKALAKE---WGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 333333332 13689999999999999999999864
No 192
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.67 E-value=3.9e-15 Score=143.65 Aligned_cols=179 Identities=19% Similarity=0.242 Sum_probs=119.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecc-eEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERN-ITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~g-it~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
.+...|+++|++|+|||||++.|++........ ...| +++. .
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~-~~~g~i~i~-----------------------------------~- 79 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNIS-DIKGPITVV-----------------------------------T- 79 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccc-cccccEEEE-----------------------------------e-
Confidence 445779999999999999999998753110000 0011 1000 0
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
.....++|+||||+- ..++..+..+|++++|+|++.+ ...++.+.+..+...+.+.+|+|+||+|+..
T Consensus 80 --------~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~-~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 80 --------GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFG-FEMETFEFLNILQVHGFPRVMGVLTHLDLFK 147 (225)
T ss_pred --------cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcC-CCHHHHHHHHHHHHcCCCeEEEEEeccccCC
Confidence 012689999999964 5666778899999999999987 6777888888888788776677999999974
Q ss_pred H-HHHHHHHHHHHHHHhcccCCCCCEEEecccCccch-----HHHHHHHHccCCCCCCCCCCCCEEEEEEeeeec
Q 039945 262 E-NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNI-----DVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVN 330 (531)
Q Consensus 262 ~-~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi-----~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~ 330 (531)
. ...++..+++++.+........+++++||++.-.+ ..++-.|...-+....+.+....|.+++++.+.
T Consensus 148 ~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~~ 222 (225)
T cd01882 148 KNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSHPYVLADRMEDIT 222 (225)
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeeccc
Confidence 3 23445555665533321235679999999987433 345555554344455566677778777766543
No 193
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.67 E-value=9.5e-16 Score=145.11 Aligned_cols=160 Identities=13% Similarity=0.175 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+|+|||||++++++... ..+.. |.+..++. ...+.+.|
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f---~~~~~------------------------pt~~~~~~-----~~~i~~~~-- 46 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF---PEEYI------------------------PTEHRRLY-----RPAVVLSG-- 46 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC---CcccC------------------------Cccccccc-----eeEEEECC--
Confidence 4799999999999999999986421 11100 11100000 00111111
Q ss_pred cccccceeeEEEEecCChhhH--------HHHHHHhccccCceEEEEeCCCCCCCcc-hHHHHHHHHH-----cCCceEE
Q 039945 186 NCRMKLLRHVSFVDCPGHDIL--------MATMLNGAAIMDGALLLIAANESCPQPQ-TSEHLAAVEI-----MRLQHII 251 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~--------~~~~~~~l~~aD~~llVvDa~~~~~~~q-t~e~l~~~~~-----~~~~~iI 251 (531)
....+.||||||+.+| .......+..+|++|+|+|++... .-+ ...++..+.. ....|+|
T Consensus 47 -----~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~-S~~~~~~~~~~i~~~~~~~~~~~pii 120 (198)
T cd04142 47 -----RVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPD-SFHYVKLLRQQILETRPAGNKEPPIV 120 (198)
T ss_pred -----EEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcccCCCCCCEE
Confidence 1257889999997543 222344578899999999998652 111 1222222221 1235799
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+|.||+|+...... ..+++.++.+. ...++++++||++|.|+++|++.+.+.+-
T Consensus 121 ivgNK~Dl~~~~~~--~~~~~~~~~~~--~~~~~~~e~Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 121 VVGNKRDQQRHRFA--PRHVLSVLVRK--SWKCGYLECSAKYNWHILLLFKELLISAT 174 (198)
T ss_pred EEEECccccccccc--cHHHHHHHHHH--hcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 99999999653211 11222222221 13579999999999999999999886554
No 194
>PTZ00369 Ras-like protein; Provisional
Probab=99.67 E-value=5.6e-16 Score=145.68 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=99.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
..+|+++|.+|+|||||++++.+.... .+.. -|+...+ .+ .+.+++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~---~~~~--~t~~~~~--~~--------------------------~~~~~~- 50 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI---DEYD--PTIEDSY--RK--------------------------QCVIDE- 50 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC---cCcC--CchhhEE--EE--------------------------EEEECC-
Confidence 479999999999999999999864211 0000 0100000 00 000111
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCCcc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl~~ 261 (531)
....+.||||||+++|.......+..+|++++|+|+++.........++..+... ...|+++|.||+|+..
T Consensus 51 ------~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 51 ------ETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred ------EEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1257889999999999887777889999999999998642111222223222221 1346999999999864
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
..... .++..++.+. ...+++++||++|.|+++++++|.+.+.
T Consensus 125 ~~~i~--~~~~~~~~~~---~~~~~~e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 125 ERQVS--TGEGQELAKS---FGIPFLETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred ccccC--HHHHHHHHHH---hCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 32111 1112222221 2368999999999999999999986654
No 195
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.67 E-value=4.5e-16 Score=143.29 Aligned_cols=155 Identities=19% Similarity=0.188 Sum_probs=97.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++|.+++|||||+++|.+.... ...-|+ ++.. ..+.+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~------~~~~t~--g~~~---------------------------~~~~~~---- 41 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPK------KVAPTV--GFTP---------------------------TKLRLD---- 41 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCc------cccCcc--cceE---------------------------EEEEEC----
Confidence 4799999999999999999875211 001111 1100 000111
Q ss_pred ccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH---cCCceEEEEEeccCCccHH
Q 039945 187 CRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI---MRLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~---~~~~~iIvviNK~Dl~~~~ 263 (531)
...+.++||||+..+.......+..+|++++|+|++...........+..+.. ...+|+++|+||+|+.+..
T Consensus 42 -----~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 42 -----KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred -----CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 26799999999998887778888999999999999864211222333322221 1236799999999997643
Q ss_pred HHHHHHHHH--HHHHhcccCCCCCEEEecccCc------cchHHHHHHHHc
Q 039945 264 VAINQHEAI--MKFIQGTVADGAPVVPISAQLK------YNIDVVCEYIVK 306 (531)
Q Consensus 264 ~~~~~~~~i--~~~l~~~~~~~~~ii~iSa~~g------~gi~~L~~~L~~ 306 (531)
...+..+.+ .++.+. .....+++++||++| .|+++-++||..
T Consensus 117 ~~~~i~~~~~l~~~~~~-~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 117 LGADVIEYLSLEKLVNE-NKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHhcCcccccCC-CCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 222222221 111111 112357889999998 899999999963
No 196
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=3.9e-16 Score=162.45 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
..|+++|.||||||||+++|++.... +.+.|.||+.. ....+.+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~k---------------------------Ia~ypfTTl~P-----nlG~v~~~--- 203 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPK---------------------------IANYHFTTLVP-----NLGVVETD--- 203 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCc---------------------------cccCCcceece-----EEEEEEEe---
Confidence 47999999999999999999975310 01123333331 11111111
Q ss_pred cccccceeeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCCCCC-CCc--chHHHHHHHHHc----CCceEE
Q 039945 186 NCRMKLLRHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAANESC-PQP--QTSEHLAAVEIM----RLQHII 251 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~~~~-~~~--qt~e~l~~~~~~----~~~~iI 251 (531)
....+.|+||||.. ......++.+..+|++|+|+|++... ..+ ....+...+..+ ..+|+|
T Consensus 204 -----~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~I 278 (424)
T PRK12297 204 -----DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQI 278 (424)
T ss_pred -----CCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEE
Confidence 02679999999953 23455667778899999999997420 111 111222333322 236789
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+|+||+|+.... +..+++.+.+ ..+++++||++++|+++|+++|.+.+.
T Consensus 279 VV~NK~DL~~~~---e~l~~l~~~l------~~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 279 VVANKMDLPEAE---ENLEEFKEKL------GPKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred EEEeCCCCcCCH---HHHHHHHHHh------CCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999985431 2223333332 158999999999999999999987664
No 197
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.67 E-value=6.1e-16 Score=142.31 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+|+|||||+++|++.... .+....+ .+.... ...+.+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~---~~~~~~~-~~~~~~-----------------------------~~~~~~-- 45 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP---TEYVPTV-FDNYSA-----------------------------TVTVDG-- 45 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCce-eeeeEE-----------------------------EEEECC--
Confidence 57999999999999999999865320 0000000 000000 000011
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcc--hHHHHHHHH-HcCCceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ--TSEHLAAVE-IMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~q--t~e~l~~~~-~~~~~~iIvviNK~Dl~~~ 262 (531)
....+.+|||||+.+|.......+..+|++++|+|++.. ...+ ..+++..+. .....|+++|+||+|+...
T Consensus 46 -----~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 46 -----KQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSP-SSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred -----EEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 125799999999988755555566889999999999763 1111 112232222 2234679999999999765
Q ss_pred HHHHH---------HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 263 NVAIN---------QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 263 ~~~~~---------~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
..... ..++..++... ....+++++||++|.|+++|+++|.+
T Consensus 120 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 120 ENTLKKLEKGKEPITPEEGEKLAKE--IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhhhhcccCCCccCHHHHHHHHHH--hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 43211 12223333332 22348999999999999999999874
No 198
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.67 E-value=7.1e-16 Score=145.31 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+++|||||+++|++... ... ...-|+...+.. + .+.++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~---~~~-~~~~t~~~~~~~-~--------------------------~~~~~~-- 47 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF---LVG-PYQNTIGAAFVA-K--------------------------RMVVGE-- 47 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc---CCc-CcccceeeEEEE-E--------------------------EEEECC--
Confidence 4799999999999999999986421 100 000011111100 0 001111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc-CCceEEEEEeccCCccHHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM-RLQHIIILQNKVDLIQENV 264 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~-~~~~iIvviNK~Dl~~~~~ 264 (531)
....+.||||||.+.|.......+..+|++++|+|.+..........++..+... ...|+++|.||+|+.....
T Consensus 48 -----~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 122 (193)
T cd04118 48 -----RVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDR 122 (193)
T ss_pred -----EEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccccc
Confidence 1156789999999887666666678999999999997641111112333333333 2357999999999864321
Q ss_pred H--HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 265 A--INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 265 ~--~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
. ....+++.++... ...+++++||++|.|+++|+++|.+.+
T Consensus 123 ~~~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 123 SLRQVDFHDVQDFADE---IKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred ccCccCHHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 1111233333322 246799999999999999999998655
No 199
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.66 E-value=8.2e-16 Score=150.32 Aligned_cols=116 Identities=14% Similarity=0.140 Sum_probs=77.8
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH-----------cCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI-----------MRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~-----------~~~~~iIvviNK~Dl~~ 261 (531)
..+.||||+|+++|.......+..+|++|+|+|.+..........++..+.. ....|+|+|.||+|+..
T Consensus 48 ~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 48 YQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 5789999999998876555567899999999999864111111222222211 12357999999999974
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPE 312 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~ 312 (531)
... ...+++.+++.. ....+++++||++|.|+++|+++|......|.
T Consensus 128 ~~~--v~~~ei~~~~~~--~~~~~~~evSAktg~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 128 PRE--VQRDEVEQLVGG--DENCAYFEVSAKKNSNLDEMFRALFSLAKLPN 174 (247)
T ss_pred ccc--cCHHHHHHHHHh--cCCCEEEEEeCCCCCCHHHHHHHHHHHhcccc
Confidence 211 122344444432 12467999999999999999999987654443
No 200
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.66 E-value=5.8e-16 Score=148.55 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+++|||||+++|++.... .. .-|+...+.. ..+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~---~~---~~Tig~~~~~-----------------------------~~~---- 41 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK---DT---VSTVGGAFYL-----------------------------KQW---- 41 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC---CC---CCccceEEEE-----------------------------EEe----
Confidence 47899999999999999999864321 00 0011110000 000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~~ 263 (531)
....+.||||||++.|.......++.+|++|+|+|++...........+..+... ...|+|+|.||+|+.+..
T Consensus 42 -----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~ 116 (220)
T cd04126 42 -----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116 (220)
T ss_pred -----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 1257899999999988777777789999999999998642111112222222221 224689999999997510
Q ss_pred -----------------HHHHHHHHHHHHHhccc-----------CCCCCEEEecccCccchHHHHHHHHccC
Q 039945 264 -----------------VAINQHEAIMKFIQGTV-----------ADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 264 -----------------~~~~~~~~i~~~l~~~~-----------~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
...-..++..++.++.. ....+++++||++|.||+++++.+.+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred ccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 01111223333332211 1136899999999999999999987544
No 201
>PLN03110 Rab GTPase; Provisional
Probab=99.66 E-value=1.6e-15 Score=145.77 Aligned_cols=161 Identities=20% Similarity=0.164 Sum_probs=103.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++++|||||+++|++... ..+... |+...+.... +.+.+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~---~~~~~~--t~g~~~~~~~---------------------------v~~~~ 58 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEF---CLESKS--TIGVEFATRT---------------------------LQVEG 58 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC---CCCCCC--ceeEEEEEEE---------------------------EEECC
Confidence 348999999999999999999986532 111111 1111111000 01111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCcc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~ 261 (531)
....+.||||||++.|.......++.+|++|+|+|.+..........++..+... ...|+++|.||+|+..
T Consensus 59 -------~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 59 -------KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred -------EEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc
Confidence 1257999999999988877777789999999999997642111122333333332 1256999999999864
Q ss_pred HHHH-HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 262 ENVA-INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 262 ~~~~-~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.... .+....+.+ ....+++++||++|.|+++++++|.+.+.
T Consensus 132 ~~~~~~~~~~~l~~------~~~~~~~e~SA~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 132 LRSVAEEDGQALAE------KEGLSFLETSALEATNVEKAFQTILLEIY 174 (216)
T ss_pred ccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3211 112222222 13578999999999999999999986654
No 202
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=1.6e-15 Score=142.34 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|..++|||||+++|++... ..+....+..+..... +.+.+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~---~~~~~~t~~~~~~~~~-----------------------------~~~~~-- 46 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF---SESTKSTIGVDFKIKT-----------------------------VYIEN-- 46 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeEEEEEE-----------------------------EEECC--
Confidence 4799999999999999999986431 1101111111110000 00111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~~ 263 (531)
....+.+|||||+++|.......+..+|++++|+|.+..........++..+..+ ...|+|++.||+|+....
T Consensus 47 -----~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 47 -----KIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred -----EEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 1257899999999988877888889999999999997642111122233333322 235789999999987432
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
... .+....+... ...+++++||++|.|+++++++|.+.+.
T Consensus 122 ~v~--~~~~~~~~~~---~~~~~~evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 122 VVD--SNIAKSFCDS---LNIPFFETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred cCC--HHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111 1111122211 2458999999999999999999876553
No 203
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.66 E-value=2.1e-15 Score=139.14 Aligned_cols=160 Identities=14% Similarity=0.179 Sum_probs=99.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||++++++... ..+....+..+.... .+.+.+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~---~~~~~~t~~~~~~~~-----------------------------~~~~~~- 48 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF---PERTEATIGVDFRER-----------------------------TVEIDG- 48 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC---CCccccceeEEEEEE-----------------------------EEEECC-
Confidence 37899999999999999999985421 111111111111000 001111
Q ss_pred ccccccceeeEEEEecCChhhHHHH-HHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCCc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMAT-MLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDLI 260 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~-~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl~ 260 (531)
....+.+|||||+++|... ....++.+|++++|+|++..........++..+... ...|+++|.||+|+.
T Consensus 49 ------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 49 ------ERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred ------eEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 1257999999999888643 444568899999999998652112222333333332 235799999999986
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccC---ccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQL---KYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~---g~gi~~L~~~L~~~l 308 (531)
...... .++..++.+. ...+++++||++ +.|+++++..|.+.+
T Consensus 123 ~~~~~~--~~~~~~~~~~---~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 123 EQIQVP--TDLAQRFADA---HSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred hhcCCC--HHHHHHHHHH---cCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 432211 1122222222 247899999999 889999999887654
No 204
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.66 E-value=1.2e-15 Score=141.71 Aligned_cols=159 Identities=15% Similarity=0.125 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+++|||||+.++....- ..+ ..-|+...+. . .+.+.+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f---~~~--~~pt~~~~~~-~---------------------------~~~~~~-- 46 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF---PSE--YVPTVFDNYA-V---------------------------TVMIGG-- 46 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCC--CCCceeeeeE-E---------------------------EEEECC--
Confidence 6899999999999999999985321 111 1111111110 0 000111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHH-HHHHHHH-cCCceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSE-HLAAVEI-MRLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e-~l~~~~~-~~~~~iIvviNK~Dl~~~~ 263 (531)
....+.||||||+++|.......++.+|++|+|+|.+.........+ ++..+.. ....|+|+|.||+|+.+..
T Consensus 47 -----~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (175)
T cd01874 47 -----EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121 (175)
T ss_pred -----EEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh
Confidence 12578999999999887666667789999999999986421111222 2333332 2345799999999986532
Q ss_pred HHHHH----------HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 264 VAINQ----------HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 264 ~~~~~----------~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
...+. .++..++.+. ....+++++||++|.|++++++.+.+
T Consensus 122 ~~~~~l~~~~~~~v~~~~~~~~a~~--~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 122 STIEKLAKNKQKPITPETGEKLARD--LKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred hhHHHhhhccCCCcCHHHHHHHHHH--hCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 21111 1122222221 23468999999999999999999875
No 205
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.66 E-value=1.2e-15 Score=141.21 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+|+|||||++++.+... ..+ ..-|+...+. ..+.+.|
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f---~~~--~~~t~~~~~~----------------------------~~~~~~~-- 47 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF---PDY--HDPTIEDAYK----------------------------QQARIDN-- 47 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC---CCC--cCCcccceEE----------------------------EEEEECC--
Confidence 6899999999999999999985421 111 0011111000 0011111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl~~~ 262 (531)
....+.||||||..+|.......+..+|++++|+|.++........++...+... ...|+++|.||+|+.+.
T Consensus 48 -----~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 48 -----EPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred -----EEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence 1257899999999988777777788999999999998752112222222333322 23579999999998643
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
..+ ..++..++.+. .+.+++++||++|.||++++++|...+
T Consensus 123 ~~v--~~~~~~~~a~~---~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 123 RQV--TTEEGRNLARE---FNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred Ccc--CHHHHHHHHHH---hCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 211 11122233222 246899999999999999999998654
No 206
>COG2262 HflX GTPases [General function prediction only]
Probab=99.66 E-value=2e-16 Score=158.63 Aligned_cols=201 Identities=17% Similarity=0.185 Sum_probs=125.1
Q ss_pred ccccCCCCccccccchhhhccccccccccccccccccccccCCCChhhhccCCeeEEEEEcCCCCcHHHHHHHHHCCCcC
Q 039945 52 GLNITSGNTDNKERGIFKETGKMSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTV 131 (531)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~ 131 (531)
+..++.+.+.+..++.+..-. ...+.+++.+....-... +...+.....|+++|.+|+|||||+|+|++....
T Consensus 146 G~rGpGE~~lE~drR~ir~rI-----~~i~~eLe~v~~~R~~~R--~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~ 218 (411)
T COG2262 146 GFRGPGETQLETDRRRIRRRI-----AKLKRELENVEKAREPRR--KKRSRSGIPLVALVGYTNAGKSTLFNALTGADVY 218 (411)
T ss_pred CCCCCCchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHh--hhhcccCCCeEEEEeeccccHHHHHHHHhccCee
Confidence 355566677777666665531 111222222222221111 1122356689999999999999999999976421
Q ss_pred ccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChh-------
Q 039945 132 RFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHD------- 204 (531)
Q Consensus 132 ~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~------- 204 (531)
.-+.-|+.+ ..|+|. +.+.+ .+.+.|.||-|+-
T Consensus 219 ----------~~d~LFATL------------dpttR~----------~~l~~--------g~~vlLtDTVGFI~~LP~~L 258 (411)
T COG2262 219 ----------VADQLFATL------------DPTTRR----------IELGD--------GRKVLLTDTVGFIRDLPHPL 258 (411)
T ss_pred ----------ccccccccc------------cCceeE----------EEeCC--------CceEEEecCccCcccCChHH
Confidence 111112111 112222 22331 1789999999942
Q ss_pred -hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC--ceEEEEEeccCCccHHHHHHHHHHHHHHHhcccC
Q 039945 205 -ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL--QHIIILQNKVDLIQENVAINQHEAIMKFIQGTVA 281 (531)
Q Consensus 205 -~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~--~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~ 281 (531)
+-.+.++.....||++|+|||++++....+.......+..++. +|+|+|+||+|++.... ....+...
T Consensus 259 V~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~------ 329 (411)
T COG2262 259 VEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERG------ 329 (411)
T ss_pred HHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhc------
Confidence 2235667777899999999999987444444555567777643 68999999999886543 11122111
Q ss_pred CCCCEEEecccCccchHHHHHHHHccCC
Q 039945 282 DGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 282 ~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
. ...+++||++|+|++.|++.|.+.++
T Consensus 330 ~-~~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 330 S-PNPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred C-CCeEEEEeccCcCHHHHHHHHHHHhh
Confidence 1 15899999999999999999998776
No 207
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=1.7e-15 Score=144.89 Aligned_cols=161 Identities=16% Similarity=0.198 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|.+|+|||||+++|++.... ..... |+...+.... +.+.+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~---~~~~~--ti~~d~~~~~---------------------------i~~~~-- 48 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFA---EVSDP--TVGVDFFSRL---------------------------IEIEP-- 48 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC---CCCCc--eeceEEEEEE---------------------------EEECC--
Confidence 78999999999999999999864321 11111 1111110000 00000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HHc--CCceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EIM--RLQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~~--~~~~iIvviNK~Dl~~~ 262 (531)
+ ....+.|+||||++.|.......+..+|++|+|+|.++........+++..+ ... ..+++++|.||+|+...
T Consensus 49 ~----~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~ 124 (211)
T cd04111 49 G----VRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQ 124 (211)
T ss_pred C----CEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccc
Confidence 0 1157899999999988877777889999999999997641111122222222 222 23567889999999753
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
... ..++..++.+. ...+++++||++|.|+++++++|.+.+.
T Consensus 125 ~~v--~~~~~~~~~~~---~~~~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 125 RQV--TREEAEKLAKD---LGMKYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred ccc--CHHHHHHHHHH---hCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 211 11122222222 2378999999999999999999987554
No 208
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=6.7e-16 Score=138.96 Aligned_cols=165 Identities=15% Similarity=0.193 Sum_probs=113.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
...+|+++|..++|||||+-++....- .+- ..-||...|....+.- .
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F---~e~--~e~TIGaaF~tktv~~---------------------------~- 50 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQF---HEN--IEPTIGAAFLTKTVTV---------------------------D- 50 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCcc---ccc--cccccccEEEEEEEEe---------------------------C-
Confidence 347999999999999999999874321 111 1123333332211110 0
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEE--EEeccCCcc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIII--LQNKVDLIQ 261 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIv--viNK~Dl~~ 261 (531)
.....+.+|||+|.++|....-...+.|+++|+|+|.++.....+.+.++..++...-+.+++ |.||+|+.+
T Consensus 51 ------~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 51 ------DNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred ------CcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 012688999999999987777777899999999999987533344555666666555455654 789999986
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPE 312 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~ 312 (531)
... ...++...+.. .....++.+||++|.|+++|+..|.+.+|...
T Consensus 125 ~R~--V~~~ea~~yAe---~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 125 RRE--VEFEEAQAYAE---SQGLLFFETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred ccc--ccHHHHHHHHH---hcCCEEEEEecccccCHHHHHHHHHHhccCcc
Confidence 322 22334444443 24678999999999999999999999888653
No 209
>PLN03118 Rab family protein; Provisional
Probab=99.65 E-value=1.5e-15 Score=145.40 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=101.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+++|++.... +.......+.... .+.+.+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~----~~~~t~~~~~~~~-----------------------------~~~~~~ 59 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE----DLAPTIGVDFKIK-----------------------------QLTVGG 59 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC----CcCCCceeEEEEE-----------------------------EEEECC
Confidence 4589999999999999999999865321 1111111110000 001111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH-HHH-HHHHHc---CCceEEEEEeccC
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS-EHL-AAVEIM---RLQHIIILQNKVD 258 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~-e~l-~~~~~~---~~~~iIvviNK~D 258 (531)
....+.|+||||+++|.......++.+|++|+|+|++.. ...+.. +.+ ..+... ...++++|.||+|
T Consensus 60 -------~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~-~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~D 131 (211)
T PLN03118 60 -------KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRR-ETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVD 131 (211)
T ss_pred -------EEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 125789999999999888777888999999999999864 111111 111 222221 1236889999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+....... .++...+... ...+++++||++|.|+++++++|.+.+.
T Consensus 132 l~~~~~i~--~~~~~~~~~~---~~~~~~e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 132 RESERDVS--REEGMALAKE---HGCLFLECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred ccccCccC--HHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 97432211 1122222222 2467999999999999999999987654
No 210
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=7e-16 Score=142.33 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=98.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccc-cceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFK-NELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~-~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
++.++|+++|.+|+|||||++++++... . .+... |+...+.. ..+.+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f---~~~~~~~--T~~~~~~~---------------------------~~~~~ 49 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSF---SLNAYSP--TIKPRYAV---------------------------NTVEV 49 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCC---CcccCCC--ccCcceEE---------------------------EEEEE
Confidence 5668999999999999999999986431 1 11000 11111100 00111
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcc-hHHHHHHHHHcCCceEEEEEeccCCc
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ-TSEHLAAVEIMRLQHIIILQNKVDLI 260 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~q-t~e~l~~~~~~~~~~iIvviNK~Dl~ 260 (531)
.| ....+.++|++|.+.+.......+..+|++|+|+|+++.. ..+ ..+++..+......|+++|+||+|+.
T Consensus 50 ~~-------~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~-s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 50 YG-------QEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPK-SFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred CC-------eEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHH-HHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 11 1156889999998877655556678999999999997641 111 11222222112236799999999996
Q ss_pred cHHHH-HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVA-INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~-~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... ....+++.+.+ ...+++++||++|.|+++|++.|.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 122 EQQQRYEVQPDEFCRKL-----GLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred ccccccccCHHHHHHHc-----CCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 43211 11122333222 222468999999999999999998654
No 211
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.65 E-value=2e-15 Score=141.91 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+++|||||+++|++... ..+.. -|+...+.. .+.+++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~---~~~~~--~t~~~~~~~----------------------------~i~~~~-- 45 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF---PQVYE--PTVFENYVH----------------------------DIFVDG-- 45 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---CCccC--CcceeeeEE----------------------------EEEECC--
Confidence 3789999999999999999986421 11100 111111100 000011
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH--HHHHHHHH-cCCceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS--EHLAAVEI-MRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~--e~l~~~~~-~~~~~iIvviNK~Dl~~~ 262 (531)
....+.||||||+++|.......+..+|++++|+|.+.. ...+.. .++..+.. ....|+|+|.||+|+...
T Consensus 46 -----~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~-~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 46 -----LHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSP-DSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred -----EEEEEEEEECCCChhccccccccccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 125789999999988765555567889999999998764 222222 12323322 234579999999999754
Q ss_pred HHHHHH----------HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 263 NVAINQ----------HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 263 ~~~~~~----------~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
...... .++..++.+. ....+++++||++|.|+++++++|.+.+..+
T Consensus 120 ~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 120 RNERDDLQRYGKHTISYEEGLAVAKR--INALRYLECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHH--cCCCEEEEccCCcCCCHHHHHHHHHHHHhcc
Confidence 322211 1122223222 2346899999999999999999998766443
No 212
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.65 E-value=9.7e-16 Score=125.92 Aligned_cols=89 Identities=21% Similarity=0.361 Sum_probs=81.3
Q ss_pred CCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeE
Q 039945 316 IDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQF 395 (531)
Q Consensus 316 ~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~ 395 (531)
+.||+|+|+++|++.+ .|++++|+|.+|.|++||++.++|++ ..++|++|+.++.++++
T Consensus 2 ~~p~r~~V~~vf~~~g--------~g~vv~G~v~~G~i~~gd~v~i~P~~-------------~~~~V~sI~~~~~~~~~ 60 (91)
T cd03693 2 DKPLRLPIQDVYKIGG--------IGTVPVGRVETGVLKPGMVVTFAPAG-------------VTGEVKSVEMHHEPLEE 60 (91)
T ss_pred CCCeEEEEEEEEEeCC--------ceEEEEEEEecceeecCCEEEECCCC-------------cEEEEEEEEECCcCcCE
Confidence 5689999999998765 78999999999999999999999974 36899999999999999
Q ss_pred EecCceEEEeeecCccccccccccceeeccCCC
Q 039945 396 AVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGS 428 (531)
Q Consensus 396 a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~ 428 (531)
|.|||.|++.|+ +++..++.+|++||+++.
T Consensus 61 a~aG~~v~i~l~---~i~~~~v~~G~vl~~~~~ 90 (91)
T cd03693 61 ALPGDNVGFNVK---NVSKKDIKRGDVAGDSKN 90 (91)
T ss_pred ECCCCEEEEEEC---CCCHHHcCCcCEEccCCC
Confidence 999999999998 888889999999998754
No 213
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.65 E-value=3.3e-15 Score=136.61 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+++|||||++++++... ..+. .-|+...+... .+.+.+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~---~~~~--~~t~~~~~~~~---------------------------~~~~~~-- 46 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEF---HSSH--ISTIGVDFKMK---------------------------TIEVDG-- 46 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC---CCCC--CCceeeEEEEE---------------------------EEEECC--
Confidence 3789999999999999999985421 1111 11111111000 000110
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~~ 263 (531)
....+.+|||||.++|.......+..+|++++|+|.+..........++..+... ...|+++|.||+|+....
T Consensus 47 -----~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~ 121 (161)
T cd04117 47 -----IKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR 121 (161)
T ss_pred -----EEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 1257899999999888777777789999999999987642111112222222222 235789999999986432
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
... .++...+.+. ...+++++||++|.|+++++++|.+.
T Consensus 122 ~v~--~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 122 QVG--DEQGNKLAKE---YGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCC--HHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 211 1122222221 23689999999999999999999753
No 214
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.65 E-value=1.6e-15 Score=145.91 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=100.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|..++|||||+++++.... ..+. .-|+...+....+ ...
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f---~~~~--~~tig~~~~~~~~---------------------------~~~- 58 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF---EKKY--EPTIGVEVHPLDF---------------------------FTN- 58 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCC---CCcc--CCccceeEEEEEE---------------------------EEC-
Confidence 448999999999999999999864321 1111 1111111100000 000
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHH-HcCCceEEEEEeccCCccH
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVE-IMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~~~~~iIvviNK~Dl~~~ 262 (531)
.....+.||||||+++|.......++.+|++|+|+|.+..........++..+. .....|+++|.||+|+...
T Consensus 59 ------~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~ 132 (219)
T PLN03071 59 ------CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (219)
T ss_pred ------CeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhc
Confidence 012689999999999887666667789999999999986521111122222222 2233579999999998642
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.... +.+ ++.. ....+++++||++|.|+++++++|.+.+.
T Consensus 133 ~v~~---~~~-~~~~---~~~~~~~e~SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 133 QVKA---KQV-TFHR---KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred cCCH---HHH-HHHH---hcCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 2111 112 2221 23568999999999999999999986653
No 215
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.64 E-value=1.6e-15 Score=139.24 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=74.7
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHHcCCceEEEEEeccCCccHHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEIMRLQHIIILQNKVDLIQENVAINQHEA 271 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~ 271 (531)
..+.||||||+.+|.......++.+|++|+|+|+++.......++.+. ++......|+++|.||+|+.......+..+.
T Consensus 44 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~ 123 (164)
T cd04162 44 AIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKE 123 (164)
T ss_pred eEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHH
Confidence 689999999999888777778899999999999976421122222222 2222234679999999998754322221111
Q ss_pred --HHHHHhcccCCCCCEEEecccC------ccchHHHHHHHH
Q 039945 272 --IMKFIQGTVADGAPVVPISAQL------KYNIDVVCEYIV 305 (531)
Q Consensus 272 --i~~~l~~~~~~~~~ii~iSa~~------g~gi~~L~~~L~ 305 (531)
+..+.+ ....+++++||++ ++|++++++.|.
T Consensus 124 ~~~~~~~~---~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 124 LELEPIAR---GRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred hCChhhcC---CCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 122211 2356789999998 999999999886
No 216
>PLN03108 Rab family protein; Provisional
Probab=99.64 E-value=2.2e-15 Score=144.10 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=101.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|.+++|||||+++|++.... .. ...|+...+.. ..+.+.+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~---~~--~~~ti~~~~~~---------------------------~~i~~~~ 52 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PV--HDLTIGVEFGA---------------------------RMITIDN 52 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC---CC--CCCCccceEEE---------------------------EEEEECC
Confidence 3489999999999999999999864211 00 00011110000 0001111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCcc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~ 261 (531)
....+.+|||||++.|.......+..+|++|+|+|++..........++..+... ...|++++.||+|+..
T Consensus 53 -------~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 53 -------KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred -------EEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 1146899999999998887778888999999999998642111111222222222 2357999999999965
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.... ..++..++.+. ...+++++||++|.|++++++++.+.+
T Consensus 126 ~~~~--~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 126 RRAV--STEEGEQFAKE---HGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred ccCC--CHHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3211 11223333332 246899999999999999998887654
No 217
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=2.3e-15 Score=146.55 Aligned_cols=155 Identities=20% Similarity=0.258 Sum_probs=106.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
...|+|.|+||+|||||+++|++.... +.+.|.||+....
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpE---------------------------vA~YPFTTK~i~v------------- 207 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPE---------------------------VAPYPFTTKGIHV------------- 207 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCc---------------------------cCCCCccccceeE-------------
Confidence 378999999999999999999987531 3455777877532
Q ss_pred ccccccceeeEEEEecCChh--------hHHHHHHHhc-cccCceEEEEeCCCCCC---CcchHHHHHHHHHcCCceEEE
Q 039945 185 ENCRMKLLRHVSFVDCPGHD--------ILMATMLNGA-AIMDGALLLIAANESCP---QPQTSEHLAAVEIMRLQHIII 252 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~--------~~~~~~~~~l-~~aD~~llVvDa~~~~~---~~qt~e~l~~~~~~~~~~iIv 252 (531)
|+++....++++|||||.- ...++++.++ ...+++||++|++..+- ..|..-+.++-..+. +|+++
T Consensus 208 -Ghfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~ 285 (346)
T COG1084 208 -GHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVV 285 (346)
T ss_pred -eeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEE
Confidence 4444444799999999942 2334555565 55789999999997531 112222223333445 78999
Q ss_pred EEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 253 LQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 253 viNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
|+||+|..+.+..++....+... .......+|+..+.+++.+.+.+...
T Consensus 286 V~nK~D~~~~e~~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 286 VINKIDIADEEKLEEIEASVLEE------GGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred EEecccccchhHHHHHHHHHHhh------ccccccceeeeehhhHHHHHHHHHHH
Confidence 99999999776655544333221 23345678999999999988887754
No 218
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.64 E-value=2.6e-15 Score=139.25 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+++|||||+.+++...- ..+ ...|+...+.. .+.+.+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f---~~~--~~~t~~~~~~~----------------------------~~~~~~-- 46 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF---PGE--YIPTVFDNYSA----------------------------NVMVDG-- 46 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CCc--CCCcceeeeEE----------------------------EEEECC--
Confidence 6899999999999999999985321 111 11111110000 000111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH--HHHHHHHH-cCCceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS--EHLAAVEI-MRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~--e~l~~~~~-~~~~~iIvviNK~Dl~~~ 262 (531)
....+.||||||.++|.......+..+|++|+|+|.+.. ...+.. .++..+.. ....|+|+|.||+|+.+.
T Consensus 47 -----~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~-~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~ 120 (174)
T cd01871 47 -----KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP-ASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 120 (174)
T ss_pred -----EEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccC
Confidence 125789999999998877666778899999999999864 222221 12232222 223579999999999642
Q ss_pred HH-HHH---------HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 263 NV-AIN---------QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 263 ~~-~~~---------~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
.. .+. ..++..++.+. ....+++++||++|+|++++++.|.+
T Consensus 121 ~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 121 KDTIEKLKEKKLTPITYPQGLAMAKE--IGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHH--cCCcEEEEecccccCCHHHHHHHHHH
Confidence 21 110 11222223322 23358999999999999999999875
No 219
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.64 E-value=4.6e-15 Score=133.50 Aligned_cols=111 Identities=21% Similarity=0.232 Sum_probs=77.1
Q ss_pred eeEEEEecCChhhHH-------HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHH
Q 039945 193 RHVSFVDCPGHDILM-------ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVA 265 (531)
Q Consensus 193 ~~i~liDtPG~~~~~-------~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~ 265 (531)
..+.|+||||+.++. ..+...+..+|++++|+|+... .......+.......+ .|+++|+||+|+......
T Consensus 45 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~-~~~~~~~~~~~~~~~~-~~~ivv~nK~D~~~~~~~ 122 (163)
T cd00880 45 GPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLR-ADEEEEKLLELLRERG-KPVLLVLNKIDLLPEEEE 122 (163)
T ss_pred CcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHhcC-CeEEEEEEccccCChhhH
Confidence 589999999976542 3445567899999999999976 3333333234444444 569999999999876544
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 266 INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 266 ~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
....+..... .......+++++||+++.|+++++++|.+.
T Consensus 123 ~~~~~~~~~~--~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 123 EELLELRLLI--LLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred HHHHHHHHhh--cccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 4332211111 112357899999999999999999999754
No 220
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.64 E-value=9.8e-15 Score=133.23 Aligned_cols=111 Identities=21% Similarity=0.251 Sum_probs=78.9
Q ss_pred eEEEEecCChhh----------HH---HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCc
Q 039945 194 HVSFVDCPGHDI----------LM---ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLI 260 (531)
Q Consensus 194 ~i~liDtPG~~~----------~~---~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~ 260 (531)
.+.++||||+.. +. .........++++++|+|.... ......+.+..+...+ .|+++++||+|+.
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~~~~~l~~~~-~~vi~v~nK~D~~ 123 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHG-PTEIDLEMLDWLEELG-IPFLVVLTKADKL 123 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcC-CCHhHHHHHHHHHHcC-CCEEEEEEchhcC
Confidence 789999999532 22 2223333567889999999865 4455555667777766 4589999999998
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
...........+...++. .....+++++||+++.|+++++++|.+.
T Consensus 124 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 124 KKSELAKALKEIKKELKL-FEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred ChHHHHHHHHHHHHHHHh-ccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 665555555555555432 1345789999999999999999999864
No 221
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.64 E-value=2.8e-15 Score=137.98 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+|+|||||+++|.+.... .+... |+...+ . ..+.+.+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~---~~~~~--t~~~~~--~--------------------------~~~~~~~-- 46 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI---ESYDP--TIEDSY--R--------------------------KQVEIDG-- 46 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC---cccCC--cchheE--E--------------------------EEEEECC--
Confidence 58999999999999999999854311 00000 000000 0 0001111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH---cCCceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI---MRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~---~~~~~iIvviNK~Dl~~~ 262 (531)
....+.+|||||+++|.......+..+|++++|+|.+..........+...+.. ....|++++.||+|+...
T Consensus 47 -----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 47 -----RQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred -----EEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence 125789999999999887777778899999999998764111111122222221 123568999999998653
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
... ..++..++.+. ....+++++||++|.|+++++++|.+.+
T Consensus 122 ~~~--~~~~~~~~~~~--~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 122 RQV--SREDGVSLSQQ--WGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred Ccc--CHHHHHHHHHH--cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 211 11122222222 2347899999999999999999998654
No 222
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.64 E-value=2.3e-15 Score=139.15 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=73.9
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH--HHHHHHHH-cCCceEEEEEeccCCccHHHHHH--
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS--EHLAAVEI-MRLQHIIILQNKVDLIQENVAIN-- 267 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~--e~l~~~~~-~~~~~iIvviNK~Dl~~~~~~~~-- 267 (531)
..+.+|||||+.+|.......+..+|++++|+|.++. ...+.. .++..+.. ....|+++|.||+|+.+......
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~-~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~ 126 (174)
T cd04135 48 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP-ASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARL 126 (174)
T ss_pred EEEEEEeCCCcccccccccccCCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHH
Confidence 5688999999988876666667889999999998764 121111 12223322 23367899999999865322111
Q ss_pred --------HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 268 --------QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 268 --------~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
..++...+.+. ....+++++||++|.|++++++.+.+.
T Consensus 127 ~~~~~~~v~~~~~~~~~~~--~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 127 NDMKEKPVTVEQGQKLAKE--IGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred hhccCCCCCHHHHHHHHHH--cCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 01222333322 234579999999999999999998754
No 223
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.64 E-value=4.5e-15 Score=143.96 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=95.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++|.+|+|||||+++|+|.... . ...|++|.+. ....+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-------------v--------------~~~~~tT~~~-----~~g~~~~~---- 45 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-------------V--------------AAYEFTTLTC-----VPGVLEYK---- 45 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-------------c--------------cCCCCccccc-----eEEEEEEC----
Confidence 6899999999999999999986320 0 0012222211 01111122
Q ss_pred ccccceeeEEEEecCChhh-------HHHHHHHhccccCceEEEEeCCCCCCCcchH-----------------------
Q 039945 187 CRMKLLRHVSFVDCPGHDI-------LMATMLNGAAIMDGALLLIAANESCPQPQTS----------------------- 236 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~-------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~----------------------- 236 (531)
...++++||||+.+ +.......++.+|++++|+|++... .+..
T Consensus 46 -----~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~--~~~~~~~~~l~~~gi~l~~~~~~v~~~ 118 (233)
T cd01896 46 -----GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPE--GHREILERELEGVGIRLNKRPPNITIK 118 (233)
T ss_pred -----CeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcch--hHHHHHHHHHHHcCceecCCCCeEEEE
Confidence 26899999999642 3445667789999999999987531 1111
Q ss_pred ---------------------HHHHHHHHcCC--------------------------ceEEEEEeccCCccHHHHHHHH
Q 039945 237 ---------------------EHLAAVEIMRL--------------------------QHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 237 ---------------------e~l~~~~~~~~--------------------------~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
....+++.+++ .|+++|+||+|+.+.+...
T Consensus 119 ~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~--- 195 (233)
T cd01896 119 KKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD--- 195 (233)
T ss_pred EEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH---
Confidence 11122322221 3688999999998754333
Q ss_pred HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 270 EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 270 ~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+. ...+++++||++|.|+++|++.|.+.+.
T Consensus 196 ----~~~-----~~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 196 ----LLA-----RQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred ----HHh-----cCCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 121 2346899999999999999999987654
No 224
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=4e-15 Score=139.38 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+++|||||+++|++.... .+. .-|+...+. ... ...+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~---~~~--~~t~~~~~~--~~i--------------------------~~~~-- 45 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP---EEY--VPTVFENYV--TNI--------------------------QGPN-- 45 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC---CCC--CCeeeeeeE--EEE--------------------------EecC--
Confidence 47999999999999999999865321 110 011111110 000 0000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH-H-HHHHHHH-cCCceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS-E-HLAAVEI-MRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~-e-~l~~~~~-~~~~~iIvviNK~Dl~~~ 262 (531)
.....+.||||||+++|.......+..+|++++|+|.++. ...+.. . ++..+.. ....|+|+|.||+|+...
T Consensus 46 ----~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 46 ----GKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNP-TSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred ----CcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhC
Confidence 0125789999999998887776778999999999999864 222111 1 2222221 223579999999998643
Q ss_pred HHH--HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 263 NVA--INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 263 ~~~--~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
... ....++..++... ....+++++||++|.|++++++.|.+.+.
T Consensus 121 ~~~~~~v~~~~~~~~~~~--~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 121 KNLDRKVTPAQAESVAKK--QGAFAYLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred ccccCCcCHHHHHHHHHH--cCCcEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 210 0011223333322 12338999999999999999999886543
No 225
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.7e-15 Score=160.87 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+||++|+||+|||||+|+|+|... ....=-|.|++-..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q---~VgNwpGvTVEkke-------------------------------------- 42 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ---KVGNWPGVTVEKKE-------------------------------------- 42 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc---eecCCCCeeEEEEE--------------------------------------
Confidence 5699999999999999999998742 11111234433211
Q ss_pred cccccceeeEEEEecCChhhH------HHHHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEecc
Q 039945 186 NCRMKLLRHVSFVDCPGHDIL------MATMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~------~~~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~ 257 (531)
+.+....+.+.++|.||.-.+ .+-+.+.+ ..+|+++.|+||++ .+....-. ..+..+|.| +|+++|++
T Consensus 43 g~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLylt-lQLlE~g~p-~ilaLNm~ 118 (653)
T COG0370 43 GKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLT-LQLLELGIP-MILALNMI 118 (653)
T ss_pred EEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHH-HHHHHcCCC-eEEEeccH
Confidence 222223367999999994211 11122222 56899999999986 23222222 344457865 99999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
|......++-..+++++.| .+|++++||++|+|+++|++.+.+..+.
T Consensus 119 D~A~~~Gi~ID~~~L~~~L------GvPVv~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 119 DEAKKRGIRIDIEKLSKLL------GVPVVPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred hhHHhcCCcccHHHHHHHh------CCCEEEEEeecCCCHHHHHHHHHHhccc
Confidence 9876655555666777765 6899999999999999999999865543
No 226
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.63 E-value=3.7e-15 Score=138.66 Aligned_cols=158 Identities=19% Similarity=0.215 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|++|+|||||+++|++..... .... |+...+ ++ ...+.+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~---~~~~--t~~~~~------------------~~----------~~~~~~-- 46 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE---SYYP--TIENTF------------------SK----------IIRYKG-- 46 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc---ccCc--chhhhE------------------EE----------EEEECC--
Confidence 589999999999999999998643210 0000 000000 00 000110
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcc-hHHHH-HHHHHcC--CceEEEEEeccCCcc
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ-TSEHL-AAVEIMR--LQHIIILQNKVDLIQ 261 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~q-t~e~l-~~~~~~~--~~~iIvviNK~Dl~~ 261 (531)
....+.|+||||+.+|.......+..+|.+++|+|.+... ..+ ....+ .+++..+ ..|+|+|+||+|+..
T Consensus 47 -----~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 47 -----QDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRK-SFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred -----EEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 1256899999999988777777888999999999998642 111 12222 2333222 246899999999864
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
..... .+++..+... ...+++++||++|.|+++++++|.+.+.
T Consensus 121 ~~~~~--~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 121 QRQVS--TEEGKELAES---WGAAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred cCccC--HHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22111 1112222221 2368999999999999999999986553
No 227
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.63 E-value=2.9e-15 Score=139.03 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+++|||||+.++.... +..+ ..-|+...+. .. +.++|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~---f~~~--~~~Ti~~~~~-~~---------------------------~~~~~-- 46 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK---FPTD--YIPTVFDNFS-AN---------------------------VSVDG-- 46 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC---CCCC--CCCcceeeeE-EE---------------------------EEECC--
Confidence 689999999999999999998432 1111 1112211110 00 00111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch--HHHHHHHHH-cCCceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT--SEHLAAVEI-MRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt--~e~l~~~~~-~~~~~iIvviNK~Dl~~~ 262 (531)
....+.||||+|+++|.......++.+|++|+|+|.+.. ..-+. ..++..+.. ....|+|+|.||+|+.+.
T Consensus 47 -----~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~-~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~ 120 (176)
T cd04133 47 -----NTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISR-ASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDD 120 (176)
T ss_pred -----EEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccC
Confidence 126899999999999887777788999999999999865 22222 223333332 233579999999999643
Q ss_pred HHH--------HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 263 NVA--------INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 263 ~~~--------~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
... ....++..++.+. ....+++++||++|.||+++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~v~~~~~~~~a~~--~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 121 KQYLADHPGASPITTAQGEELRKQ--IGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred hhhhhhccCCCCCCHHHHHHHHHH--cCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 110 0112233333332 1223699999999999999999998755
No 228
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.62 E-value=4.5e-15 Score=137.29 Aligned_cols=160 Identities=18% Similarity=0.112 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|++++|||||+++|.+.... .+. .-|+...+. ..+.+.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~---~~~--~~t~~~~~~----------------------------~~~~~~~-- 46 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP---EVY--VPTVFENYV----------------------------ADIEVDG-- 46 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC---CCC--CCccccceE----------------------------EEEEECC--
Confidence 57999999999999999999864211 000 001000000 0001111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHH-HHHHHH-HcCCceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSE-HLAAVE-IMRLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e-~l~~~~-~~~~~~iIvviNK~Dl~~~~ 263 (531)
....+.||||||+++|.......+..+|++++|+|.+.........+ ++..+. .....|+++|.||+|+....
T Consensus 47 -----~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (175)
T cd01870 47 -----KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121 (175)
T ss_pred -----EEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccCh
Confidence 12578999999998887665567789999999999875310011111 122222 22345799999999987532
Q ss_pred HHHHH----------HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 264 VAINQ----------HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 264 ~~~~~----------~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
..... ..+..++.+. ....+++++||++|.|+++|+++|.+.
T Consensus 122 ~~~~~i~~~~~~~v~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 122 HTRRELAKMKQEPVKPEEGRDMANK--IGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred hhhhhhhhccCCCccHHHHHHHHHH--cCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 21111 1122222222 234589999999999999999999753
No 229
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.4e-14 Score=130.44 Aligned_cols=162 Identities=14% Similarity=0.127 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|..++||||||+++.-...+ ....-||-+.|-..++|-. |
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd-----~~YqATIGiDFlskt~~l~---------------------------d-- 68 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFD-----NTYQATIGIDFLSKTMYLE---------------------------D-- 68 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhc-----ccccceeeeEEEEEEEEEc---------------------------C--
Confidence 78999999999999999999843211 1234455554433322211 1
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHH-HcCC--ceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVE-IMRL--QHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~~~--~~iIvviNK~Dl~~~ 262 (531)
...++.||||+|+++|-...-..++.+.++|+|+|.++.....++..++.-+. ..|- .-+++|.||.||.++
T Consensus 69 -----~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 69 -----RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred -----cEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 12689999999999998888888999999999999987544556666664443 3333 235678899999987
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
.+......+ ...++ -+..++.+||+.|.||..|+..|...+|.+
T Consensus 144 rqvs~eEg~--~kAke---l~a~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 144 RQVSIEEGE--RKAKE---LNAEFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred hhhhHHHHH--HHHHH---hCcEEEEecccCCCCHHHHHHHHHHhccCc
Confidence 543322111 22222 245899999999999999999999888765
No 230
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.62 E-value=3.7e-15 Score=137.77 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=74.5
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH-H-HHHHHH-HcCCceEEEEEeccCCccHHH-HHH-
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS-E-HLAAVE-IMRLQHIIILQNKVDLIQENV-AIN- 267 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~-e-~l~~~~-~~~~~~iIvviNK~Dl~~~~~-~~~- 267 (531)
..+.+|||||+++|.......+..+|++|+|+|.+... .-+.. . ++..+. .....|+|+|.||+|+..... ...
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~ 124 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPA-SFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLREL 124 (174)
T ss_pred EEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhh
Confidence 57899999999888766666778999999999987541 11111 1 222222 223467999999999975221 100
Q ss_pred --------HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 268 --------QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 268 --------~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
..++..++.+. ....+++++||++|.|+++|++.|.+.+
T Consensus 125 ~~~~~~~v~~~~~~~~~~~--~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 125 SKQKQEPVTYEQGEALAKR--IGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred hcccCCCccHHHHHHHHHH--cCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 11222233322 2234799999999999999999987543
No 231
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.61 E-value=2.9e-15 Score=137.34 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=71.6
Q ss_pred eeEEEEecCChhh-HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc----CCceEEEEEeccCCccHHHHHH
Q 039945 193 RHVSFVDCPGHDI-LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM----RLQHIIILQNKVDLIQENVAIN 267 (531)
Q Consensus 193 ~~i~liDtPG~~~-~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~----~~~~iIvviNK~Dl~~~~~~~~ 267 (531)
..+.||||||+.. +.......+..+|++|+|+|++..........++..+... ...|+++|.||+|+.......
T Consensus 47 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~- 125 (165)
T cd04146 47 VSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVS- 125 (165)
T ss_pred EEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccC-
Confidence 4688999999885 3344566778899999999998652111122223333332 135699999999986432111
Q ss_pred HHHHHHHHHhcccCCCCCEEEecccCc-cchHHHHHHHHccC
Q 039945 268 QHEAIMKFIQGTVADGAPVVPISAQLK-YNIDVVCEYIVKKI 308 (531)
Q Consensus 268 ~~~~i~~~l~~~~~~~~~ii~iSa~~g-~gi~~L~~~L~~~l 308 (531)
.++..++.+. ...+++++||++| .|++++++.|.+.+
T Consensus 126 -~~~~~~~~~~---~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 126 -TEEGEKLASE---LGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred -HHHHHHHHHH---cCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 1122222222 2368999999999 49999999987543
No 232
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.61 E-value=7.1e-15 Score=138.41 Aligned_cols=163 Identities=14% Similarity=0.085 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|..++|||||+.++.... +..+ ..-|+...+. . .+.+++
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~---f~~~--~~~t~~~~~~--~--------------------------~~~~~~-- 48 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA---FPKE--YIPTVFDNYS--A--------------------------QTAVDG-- 48 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC---CCcC--CCCceEeeeE--E--------------------------EEEECC--
Confidence 789999999999999999998532 1111 1112211110 0 000111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH-H-HHHHHH-HcCCceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS-E-HLAAVE-IMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~-e-~l~~~~-~~~~~~iIvviNK~Dl~~~ 262 (531)
....+.||||||+++|.......++.+|++|+|+|.++.. .-+.. . +...+. .....|+++|.||+|+.+.
T Consensus 49 -----~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~-Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~ 122 (191)
T cd01875 49 -----RTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPS-SYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND 122 (191)
T ss_pred -----EEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC
Confidence 1267999999999998876666788999999999997642 21111 1 222222 2234579999999999643
Q ss_pred HHH-HH---------HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 263 NVA-IN---------QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 263 ~~~-~~---------~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
... +. ..++..++.+. ....+++++||++|+|+++++++|.+.+-.|
T Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~a~~--~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 123 ADTLKKLKEQGQAPITPQQGGALAKQ--IHAVKYLECSALNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHH--cCCcEEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence 211 10 01122223222 1235899999999999999999998765433
No 233
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.60 E-value=7.8e-15 Score=141.63 Aligned_cols=157 Identities=20% Similarity=0.259 Sum_probs=101.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+....|+++|.||+|||||+|+|+..... .-+. +.||-. +....+.++
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpk----------Va~Y-----------------aFTTL~-----P~iG~v~yd 241 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPK----------VAHY-----------------AFTTLR-----PHIGTVNYD 241 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCc----------cccc-----------------ceeeec-----cccceeecc
Confidence 44568899999999999999999976421 0111 112211 122233333
Q ss_pred CCccccccceeeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCCCCCC-Cc--chHHHHHHHH----HcCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAANESCP-QP--QTSEHLAAVE----IMRLQ 248 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~~~~~-~~--qt~e~l~~~~----~~~~~ 248 (531)
+ ...+++-|.||.- -.--..++.+..|+..+||||.+.+.. .+ +....+..++ .+..+
T Consensus 242 d--------f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~r 313 (366)
T KOG1489|consen 242 D--------FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADR 313 (366)
T ss_pred c--------cceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccC
Confidence 2 2569999999942 233456777899999999999987521 11 1111112222 23457
Q ss_pred eEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 249 HIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
|.+||+||+|+.+.+ +..++++.+.+. +..++++||++++|+++|++.|..
T Consensus 314 p~liVaNKiD~~eae--~~~l~~L~~~lq-----~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 314 PALIVANKIDLPEAE--KNLLSSLAKRLQ-----NPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred ceEEEEeccCchhHH--HHHHHHHHHHcC-----CCcEEEeeeccccchHHHHHHHhh
Confidence 899999999996332 223455666553 346999999999999999999874
No 234
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.60 E-value=9.1e-15 Score=135.70 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=104.7
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
.+...+|+++|..+||||||+++|...... ......++.. ..+.+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~--------~~~pT~g~~~---------------------------~~i~~ 55 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS--------ETIPTIGFNI---------------------------EEIKY 55 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE--------EEEEESSEEE---------------------------EEEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc--------ccCccccccc---------------------------ceeee
Confidence 366799999999999999999999854211 0111111110 00111
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHH--HcCCceEEEEEeccC
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVE--IMRLQHIIILQNKVD 258 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~--~~~~~~iIvviNK~D 258 (531)
. +..+.++|.+|+..+...+...+..+|++|||||+++.....+.++.+. ++. .+...|++|++||+|
T Consensus 56 ~---------~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D 126 (175)
T PF00025_consen 56 K---------GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQD 126 (175)
T ss_dssp T---------TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTT
T ss_pred C---------cEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccc
Confidence 1 2689999999988776666677789999999999986422233444442 222 133468999999999
Q ss_pred CccHHHHHHHHHHHHHHHh--ccc-CCCCCEEEecccCccchHHHHHHHHcc
Q 039945 259 LIQENVAINQHEAIMKFIQ--GTV-ADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~--~~~-~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
+.+..... ++.+.+. ... ...+.++.+||.+|+|+.+.++||.+.
T Consensus 127 ~~~~~~~~----~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 127 LPDAMSEE----EIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp STTSSTHH----HHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ccCcchhh----HHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 97643322 2333332 111 345679999999999999999999754
No 235
>PRK09866 hypothetical protein; Provisional
Probab=99.60 E-value=2.5e-14 Score=151.21 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=82.9
Q ss_pred eeEEEEecCChh-----hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC-ceEEEEEeccCCccHHH--
Q 039945 193 RHVSFVDCPGHD-----ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL-QHIIILQNKVDLIQENV-- 264 (531)
Q Consensus 193 ~~i~liDtPG~~-----~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~-~~iIvviNK~Dl~~~~~-- 264 (531)
.++.|+||||.. .+.+.|...+..+|++|||+|+..+ ......+.+..++..+. .|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~-~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL-KSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC-CChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 689999999942 2455677789999999999999876 45556667777776663 37999999999975221
Q ss_pred HHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 265 AINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 265 ~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
.+...+.+...+.........++||||++|.|++.|++.|..+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 2223333333333222345679999999999999999999863
No 236
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=4.6e-14 Score=126.60 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=111.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCcc----ccce---ecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRF----KNEL---ERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNP 177 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~----~~e~---~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 177 (531)
..+|+++|..++||||++.+++....... .+.. .|..|+.+.| .
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~-----------------------------g 60 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDF-----------------------------G 60 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecc-----------------------------c
Confidence 47899999999999999999985432100 0011 2224444333 2
Q ss_pred CCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEecc
Q 039945 178 LCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 178 ~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~ 257 (531)
++.+.+ ...+.|+|||||++|--.+--..+.++.++++||++.+ .....++.+.++......|++|++||.
T Consensus 61 ~~~~~~--------~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~-~~~~a~~ii~f~~~~~~ip~vVa~NK~ 131 (187)
T COG2229 61 SIELDE--------DTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP-ITFHAEEIIDFLTSRNPIPVVVAINKQ 131 (187)
T ss_pred ceEEcC--------cceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCC-cchHHHHHHHHHhhccCCCEEEEeecc
Confidence 222221 16899999999999877777777889999999999887 344445666777766645699999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
|+.+.... ++++++++.. ....|+|+++|..++|..+.++.|...
T Consensus 132 DL~~a~pp----e~i~e~l~~~-~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 132 DLFDALPP----EKIREALKLE-LLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ccCCCCCH----HHHHHHHHhc-cCCCceeeeecccchhHHHHHHHHHhh
Confidence 99875322 2344444321 136899999999999999988888754
No 237
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.59 E-value=1e-14 Score=140.61 Aligned_cols=110 Identities=17% Similarity=0.137 Sum_probs=71.6
Q ss_pred eeEEEEecCChhhHHHHHHHhcc-ccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCCccHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAA-IMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDLIQENVAINQ 268 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~-~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~ 268 (531)
..+.||||||++.+... ..+. .+|++++|+|+++........+++..+... ...|+|+|.||+|+.......
T Consensus 50 ~~l~i~Dt~G~~~~~~~--~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~-- 125 (221)
T cd04148 50 STLVVIDHWEQEMWTED--SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVS-- 125 (221)
T ss_pred EEEEEEeCCCcchHHHh--HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceec--
Confidence 67999999999844332 2334 899999999998642111122333333332 235799999999986532211
Q ss_pred HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 269 HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 269 ~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.++..++... ...+++++||++|.|+++|+++|.+.+.
T Consensus 126 ~~~~~~~a~~---~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 126 VQEGRACAVV---FDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1112222221 2468999999999999999999987664
No 238
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.59 E-value=8.8e-15 Score=135.38 Aligned_cols=110 Identities=14% Similarity=0.094 Sum_probs=73.5
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch--HHHHHHHHH-cCCceEEEEEeccCCccHHHH----
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT--SEHLAAVEI-MRLQHIIILQNKVDLIQENVA---- 265 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt--~e~l~~~~~-~~~~~iIvviNK~Dl~~~~~~---- 265 (531)
..+.||||||+++|.......++.+|++|+|+|.++. ..-+. ..++..+.. ....|++++.||+|+......
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~-~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 126 (173)
T cd04130 48 VRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNP-SSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQL 126 (173)
T ss_pred EEEEEEECCCChhhccccccccCCCcEEEEEEECCCH-HHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHH
Confidence 6789999999988876666677899999999999864 22211 122333332 223679999999998643211
Q ss_pred ------HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHH
Q 039945 266 ------INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIV 305 (531)
Q Consensus 266 ------~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~ 305 (531)
.-..++...+.+. ....+++++||++|.|+++|++.+.
T Consensus 127 ~~~~~~~v~~~~~~~~a~~--~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 127 ARYGEKPVSQSRAKALAEK--IGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred hhcCCCCcCHHHHHHHHHH--hCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 0011223333322 1234899999999999999999875
No 239
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.59 E-value=2.7e-14 Score=135.09 Aligned_cols=164 Identities=19% Similarity=0.224 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+|+|||||+|+|+|.... . +..+++.. . .+++.. ..+...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~---~--~~~~~~~~-~----------------~~t~~~-------~~~~~~--- 49 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHE---E--EGAAPTGV-V----------------ETTMKR-------TPYPHP--- 49 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCC---C--CCccccCc-c----------------ccccCc-------eeeecC---
Confidence 68999999999999999999985311 0 00011100 0 000000 000000
Q ss_pred cccccceeeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccC
Q 039945 186 NCRMKLLRHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVD 258 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~D 258 (531)
....+.+|||||.. +|... ..+..+|++++|.|. . .......++..+...+ +++++|+||+|
T Consensus 50 -----~~~~l~l~DtpG~~~~~~~~~~~l~~--~~~~~~d~~l~v~~~--~-~~~~d~~~~~~l~~~~-~~~ilV~nK~D 118 (197)
T cd04104 50 -----KFPNVTLWDLPGIGSTAFPPDDYLEE--MKFSEYDFFIIISST--R-FSSNDVKLAKAIQCMG-KKFYFVRTKVD 118 (197)
T ss_pred -----CCCCceEEeCCCCCcccCCHHHHHHH--hCccCcCEEEEEeCC--C-CCHHHHHHHHHHHHhC-CCEEEEEeccc
Confidence 01468999999963 34332 245778998888553 2 4455556667777776 56999999999
Q ss_pred CccHHH---------HHHHHHHHHH----HHhcccCCCCCEEEeccc--CccchHHHHHHHHccCCCCC
Q 039945 259 LIQENV---------AINQHEAIMK----FIQGTVADGAPVVPISAQ--LKYNIDVVCEYIVKKIPIPE 312 (531)
Q Consensus 259 l~~~~~---------~~~~~~~i~~----~l~~~~~~~~~ii~iSa~--~g~gi~~L~~~L~~~l~~~~ 312 (531)
+..+.. .++..+++++ .++..+....+++.+|+. .+.|+..|.+.|...+|..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 119 RDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred chhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 854222 1233444443 333323445689999999 68999999999998888643
No 240
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.59 E-value=9.3e-15 Score=159.38 Aligned_cols=146 Identities=21% Similarity=0.184 Sum_probs=94.5
Q ss_pred cCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCccccccc
Q 039945 112 GHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKL 191 (531)
Q Consensus 112 G~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~ 191 (531)
|.+|+|||||+|+|+|... ......|.|++.... .+.+.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~---~v~n~pG~Tv~~~~~-----------------------------~i~~~--------- 39 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ---TVGNWPGVTVEKKEG-----------------------------KLGFQ--------- 39 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC---eecCCCCeEEEEEEE-----------------------------EEEEC---------
Confidence 8999999999999998632 122233444433221 11112
Q ss_pred eeeEEEEecCChhhHHHH-----HHH---hccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHH
Q 039945 192 LRHVSFVDCPGHDILMAT-----MLN---GAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~-----~~~---~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~ 263 (531)
+..++++||||+.++... +.+ ....+|++++|+|++.. .. .......+...+ .|+++|+||+|+.+..
T Consensus 40 ~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l--er-~l~l~~ql~~~~-~PiIIVlNK~Dl~~~~ 115 (591)
T TIGR00437 40 GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL--ER-NLYLTLQLLELG-IPMILALNLVDEAEKK 115 (591)
T ss_pred CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc--hh-hHHHHHHHHhcC-CCEEEEEehhHHHHhC
Confidence 157899999998765321 111 23578999999999863 22 223333344456 5699999999986543
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
......+++.+.+ +.+++++||++|+|+++|++++.+..
T Consensus 116 ~i~~d~~~L~~~l------g~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 116 GIRIDEEKLEERL------GVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred CChhhHHHHHHHc------CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3322334444432 47999999999999999999998643
No 241
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.59 E-value=1e-14 Score=130.06 Aligned_cols=164 Identities=15% Similarity=0.156 Sum_probs=108.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|.++|.+|+|||||+|++....- ......||...+-.-+++ ++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF-----~~qykaTIgadFltKev~---------------------------Vd 54 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKF-----SQQYKATIGADFLTKEVQ---------------------------VD 54 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHH-----HHHhccccchhheeeEEE---------------------------Ec
Confidence 4568999999999999999999975321 112233444333211111 11
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH--HHHHHcCC-----ceEEEEEe
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL--AAVEIMRL-----QHIIILQN 255 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l--~~~~~~~~-----~~iIvviN 255 (531)
+ ....+.+|||+|.++|-..-....+.+|.+++|.|.+.. ......+.+ +++..... -|+||+.|
T Consensus 55 ~-------~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~-~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGN 126 (210)
T KOG0394|consen 55 D-------RSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNP-KSFENLENWRKEFLIQASPQDPETFPFVILGN 126 (210)
T ss_pred C-------eEEEEEEEecccHHHhhhcccceecCCceEEEEeecCCh-hhhccHHHHHHHHHHhcCCCCCCcccEEEEcc
Confidence 1 125789999999999987777778999999999998764 233333322 33333321 26899999
Q ss_pred ccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 256 KVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 256 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
|+|+.+........++.+...+. ..++|++++|||.+.|+++.++.+.+..
T Consensus 127 KiD~~~~~~r~VS~~~Aq~WC~s--~gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 127 KIDVDGGKSRQVSEKKAQTWCKS--KGNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred cccCCCCccceeeHHHHHHHHHh--cCCceeEEecccccccHHHHHHHHHHHH
Confidence 99997532222223334444443 3589999999999999999888877543
No 242
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.58 E-value=3.5e-14 Score=132.50 Aligned_cols=161 Identities=11% Similarity=0.063 Sum_probs=100.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|+++|..++|||||++++....- ..+ ..-|+...+. + .+.++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f---~~~--~~pT~~~~~~--~--------------------------~~~~~ 49 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCF---PEN--YVPTVFENYT--A--------------------------SFEID 49 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCC---CCc--cCCceeeeeE--E--------------------------EEEEC
Confidence 3457999999999999999999985421 111 1112211110 0 00111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch--HHHHHHHHH-cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT--SEHLAAVEI-MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt--~e~l~~~~~-~~~~~iIvviNK~Dl 259 (531)
+ ....+.||||+|.+.|.......++.+|++|+|+|.+... .-+. ..++..+.. ....|+|+|.||+|+
T Consensus 50 ~-------~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~-Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL 121 (182)
T cd04172 50 T-------QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE-TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 121 (182)
T ss_pred C-------EEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEeEChhh
Confidence 1 1267999999999988776667789999999999987642 2222 122223322 233579999999998
Q ss_pred ccHHH-H---------HHHHHHHHHHHhcccCCCCCEEEecccCccc-hHHHHHHHHc
Q 039945 260 IQENV-A---------INQHEAIMKFIQGTVADGAPVVPISAQLKYN-IDVVCEYIVK 306 (531)
Q Consensus 260 ~~~~~-~---------~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~g-i~~L~~~L~~ 306 (531)
.+... . .-..++..++.+. ....+++++||++|.| |+++++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~--~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 122 RTDLTTLVELSNHRQTPVSYDQGANMAKQ--IGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred hcChhhHHHHHhcCCCCCCHHHHHHHHHH--cCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 54210 0 0112233333332 1224899999999998 9999998765
No 243
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=3.8e-14 Score=136.85 Aligned_cols=159 Identities=15% Similarity=0.065 Sum_probs=100.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|..++|||||+.++++..- ..+. .-|+...+.. .+.+.+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F---~~~y--~pTi~~~~~~----------------------------~i~~~~- 58 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY---PETY--VPTVFENYTA----------------------------GLETEE- 58 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC---CCCc--CCceeeeeEE----------------------------EEEECC-
Confidence 47999999999999999999985421 1111 1111111100 001111
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch--HHHHHHHHH-cCCceEEEEEeccCCcc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT--SEHLAAVEI-MRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt--~e~l~~~~~-~~~~~iIvviNK~Dl~~ 261 (531)
....+.||||||.+.|.......+..+|++|+|+|.+.. ...+. ..++..+.. ....|+|+|.||+|+..
T Consensus 59 ------~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~-~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 131 (232)
T cd04174 59 ------QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP-ETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT 131 (232)
T ss_pred ------EEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCCh-HHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 126799999999998877677778999999999999865 22221 122333332 33457999999999853
Q ss_pred HHH----------HHHHHHHHHHHHhcccCCCC-CEEEecccCcc-chHHHHHHHHcc
Q 039945 262 ENV----------AINQHEAIMKFIQGTVADGA-PVVPISAQLKY-NIDVVCEYIVKK 307 (531)
Q Consensus 262 ~~~----------~~~~~~~i~~~l~~~~~~~~-~ii~iSa~~g~-gi~~L~~~L~~~ 307 (531)
... .....++..++.+. .+. +++++||++|+ |++++++.+...
T Consensus 132 ~~~~~~~l~~~~~~~Vs~~e~~~~a~~---~~~~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 132 DLSTLMELSNQKQAPISYEQGCALAKQ---LGAEVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred ccchhhhhccccCCcCCHHHHHHHHHH---cCCCEEEEccCCcCCcCHHHHHHHHHHH
Confidence 100 00112334444433 234 68999999998 899999988654
No 244
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.58 E-value=1.6e-14 Score=136.65 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=76.9
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcc-hHHHHHHHHH-cCCceEEEEEeccCCccHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ-TSEHLAAVEI-MRLQHIIILQNKVDLIQENVAINQHE 270 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~q-t~e~l~~~~~-~~~~~iIvviNK~Dl~~~~~~~~~~~ 270 (531)
..+.||||||+++|...+...++.+|++|+|+|.+.. ...+ ...++..+.. ....|+|+|.||+|+....... +
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~-~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~---~ 119 (200)
T smart00176 44 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR-VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKA---K 119 (200)
T ss_pred EEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh-HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCH---H
Confidence 6899999999999988777788999999999999875 2221 2223332332 2335799999999985421111 1
Q ss_pred HHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 271 AIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 271 ~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+ ++.+ ....+++++||++|.||++++++|.+.+.
T Consensus 120 ~~-~~~~---~~~~~~~e~SAk~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 120 SI-TFHR---KKNLQYYDISAKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred HH-HHHH---HcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11 2221 23578999999999999999999987653
No 245
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=4.1e-14 Score=131.64 Aligned_cols=158 Identities=11% Similarity=0.050 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|.+++|||||++++.+..- ..+.. -|+...+. . .+.+++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f---~~~~~--~t~~~~~~--~--------------------------~~~~~~-- 46 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY---PETYV--PTVFENYT--A--------------------------SFEIDE-- 46 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC---CCCcC--CceEEEEE--E--------------------------EEEECC--
Confidence 6899999999999999999985421 11111 11111110 0 001111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch--HHHHHHHHH-cCCceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT--SEHLAAVEI-MRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt--~e~l~~~~~-~~~~~iIvviNK~Dl~~~ 262 (531)
....+.||||||++.|.......++.+|++|+|+|.+... .-+. ..++..+.. ....|+|+|.||+|+.+.
T Consensus 47 -----~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~-Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~ 120 (178)
T cd04131 47 -----QRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPE-TLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTD 120 (178)
T ss_pred -----EEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChh-hHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcC
Confidence 1267999999999988766666779999999999997652 2222 223333332 234578999999998541
Q ss_pred HH-H---------HHHHHHHHHHHhcccCCCCCEEEecccCccc-hHHHHHHHHc
Q 039945 263 NV-A---------INQHEAIMKFIQGTVADGAPVVPISAQLKYN-IDVVCEYIVK 306 (531)
Q Consensus 263 ~~-~---------~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~g-i~~L~~~L~~ 306 (531)
.. . .-..++..++.+. ....+++++||++|+| ++++++.+.+
T Consensus 121 ~~~~~~~~~~~~~~v~~~e~~~~a~~--~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 121 LSTLMELSHQRQAPVSYEQGCAIAKQ--LGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred hhHHHHHHhcCCCCCCHHHHHHHHHH--hCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 10 0 0112233333332 1224799999999995 9999998875
No 246
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.57 E-value=1.3e-14 Score=117.06 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=75.4
Q ss_pred CCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEe
Q 039945 318 PPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAV 397 (531)
Q Consensus 318 ~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~ 397 (531)
||+|+|+++|+++ .|++++|+|.+|++++||+|.++|++ ..++|++|+.++.++++|.
T Consensus 1 p~r~~V~~v~~~~---------~g~vv~G~v~~G~i~~Gd~v~i~P~~-------------~~~~V~si~~~~~~~~~a~ 58 (83)
T cd03698 1 PFRLPISDKYKDQ---------GGTVVSGKVESGSIQKGDTLLVMPSK-------------ESVEVKSIYVDDEEVDYAV 58 (83)
T ss_pred CeEEEEEeEEEcC---------CCcEEEEEEeeeEEeCCCEEEEeCCC-------------cEEEEEEEEECCeECCEEC
Confidence 6899999999753 58999999999999999999999984 3589999999999999999
Q ss_pred cCceEEEeeecCccccccccccceeecc
Q 039945 398 PGGLIGVGTTMDPTLTRADRLVGQVLGE 425 (531)
Q Consensus 398 aG~~v~i~l~~~~~~~~~~i~~G~vl~~ 425 (531)
|||.|++.|+ +++..++.+|++|++
T Consensus 59 aGd~v~~~l~---~~~~~~v~~G~vl~~ 83 (83)
T cd03698 59 AGENVRLKLK---GIDEEDISPGDVLCS 83 (83)
T ss_pred CCCEEEEEEC---CCCHHHCCCCCEEeC
Confidence 9999999998 788889999999974
No 247
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.57 E-value=1.9e-14 Score=139.56 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=102.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...-+|+++|.|++|||||++.|++.... + .+.|.||... ++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~se-------------v--------------a~y~FTTl~~-----------VP 102 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSE-------------V--------------ADYPFTTLEP-----------VP 102 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCcc-------------c--------------cccCceeccc-----------cc
Confidence 34478999999999999999999987531 1 1113333321 12
Q ss_pred CCccccccceeeEEEEecCChhh-------HHHHHHHhccccCceEEEEeCCCCCC------------------------
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDI-------LMATMLNGAAIMDGALLLIAANESCP------------------------ 231 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~-------~~~~~~~~l~~aD~~llVvDa~~~~~------------------------ 231 (531)
+.+++....|+|+|+||.-. ..++.+..++.||++++|+|+.+...
T Consensus 103 ---G~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~ 179 (365)
T COG1163 103 ---GMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVT 179 (365)
T ss_pred ---ceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceE
Confidence 34444458999999999521 23567778899999999999985310
Q ss_pred -----------------CcchHH-HHHHHHHcCC--------------------------ceEEEEEeccCCccHHHHHH
Q 039945 232 -----------------QPQTSE-HLAAVEIMRL--------------------------QHIIILQNKVDLIQENVAIN 267 (531)
Q Consensus 232 -----------------~~qt~e-~l~~~~~~~~--------------------------~~iIvviNK~Dl~~~~~~~~ 267 (531)
..-+.. .-.+++.+++ .|.++|+||+|+.+.+.+..
T Consensus 180 I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~ 259 (365)
T COG1163 180 IKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELER 259 (365)
T ss_pred EEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHH
Confidence 000111 1122333222 47899999999988543332
Q ss_pred HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 268 QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 268 ~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+.+ ..+.+++||+.++|+++|.+.|.+.+.
T Consensus 260 ----l~~--------~~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 260 ----LAR--------KPNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ----HHh--------ccceEEEecccCCCHHHHHHHHHHhhC
Confidence 222 237899999999999999999998765
No 248
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.57 E-value=2.8e-14 Score=126.74 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=75.3
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH----HHHHHcCCceEEEEEeccCCccHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL----AAVEIMRLQHIIILQNKVDLIQENVAINQ 268 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l----~~~~~~~~~~iIvviNK~Dl~~~~~~~~~ 268 (531)
..+.++|+||+.++.......+..+|++++|+|++.+ ........+ .........|+++++||+|+.........
T Consensus 45 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~ 123 (157)
T cd00882 45 VKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDR-ESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEE 123 (157)
T ss_pred EEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHH
Confidence 6899999999998887777788999999999999875 222222211 11112234679999999999865433222
Q ss_pred HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHH
Q 039945 269 HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIV 305 (531)
Q Consensus 269 ~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~ 305 (531)
. ....... ....+++++|+.++.|+++++++|.
T Consensus 124 ~--~~~~~~~--~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 124 E--LAEQLAK--ELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred H--HHHHHHh--hcCCcEEEEecCCCCChHHHHHHHh
Confidence 1 0111111 3467999999999999999999985
No 249
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.57 E-value=1.7e-14 Score=117.40 Aligned_cols=87 Identities=17% Similarity=0.306 Sum_probs=77.1
Q ss_pred CEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEec
Q 039945 319 PNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVP 398 (531)
Q Consensus 319 ~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~a 398 (531)
|+|+|+++|++.+ .|+|++|+|.+|.+++||++.++|.+ +|.| ..++|++|+.++.++++|.|
T Consensus 1 ~~~~I~~vf~v~g--------~GtVv~G~v~~G~v~~g~~v~~~P~~-----~g~~----~~~~V~sI~~~~~~~~~a~a 63 (87)
T cd03694 1 AEFQIDEIYSVPG--------VGTVVGGTVSKGVIRLGDTLLLGPDQ-----DGSF----RPVTVKSIHRNRSPVRVVRA 63 (87)
T ss_pred CEEEEEeEEEcCC--------cceEEEEEEecCEEeCCCEEEECCCC-----CCCE----eEEEEEEEEECCeECCEECC
Confidence 6899999998865 79999999999999999999999973 1222 36899999999999999999
Q ss_pred CceEEEeeecCccccccccccceeecc
Q 039945 399 GGLIGVGTTMDPTLTRADRLVGQVLGE 425 (531)
Q Consensus 399 G~~v~i~l~~~~~~~~~~i~~G~vl~~ 425 (531)
||++++.|+ +++.+++.+|++||+
T Consensus 64 Gd~v~l~l~---~i~~~~i~~G~vl~~ 87 (87)
T cd03694 64 GQSASLALK---KIDRSLLRKGMVLVS 87 (87)
T ss_pred CCEEEEEEc---CCCHHHcCCccEEeC
Confidence 999999997 888899999999974
No 250
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.56 E-value=2.5e-14 Score=115.18 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=74.5
Q ss_pred CCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEe
Q 039945 318 PPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAV 397 (531)
Q Consensus 318 ~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~ 397 (531)
||+|+|+++|+. .|++++|+|.+|++++||++.++|++ ..++|++|+.++.++++|.
T Consensus 1 plr~~I~~v~~~----------~g~vv~G~v~~G~i~~G~~v~i~P~~-------------~~~~V~si~~~~~~~~~a~ 57 (82)
T cd04089 1 PLRLPIIDKYKD----------MGTVVLGKVESGTIKKGDKLLVMPNK-------------TQVEVLSIYNEDVEVRYAR 57 (82)
T ss_pred CeEEEEEeEEEc----------CCEEEEEEEeeeEEecCCEEEEeCCC-------------cEEEEEEEEECCEECCEEC
Confidence 689999999963 37999999999999999999999974 3589999999999999999
Q ss_pred cCceEEEeeecCccccccccccceeecc
Q 039945 398 PGGLIGVGTTMDPTLTRADRLVGQVLGE 425 (531)
Q Consensus 398 aG~~v~i~l~~~~~~~~~~i~~G~vl~~ 425 (531)
|||.|++.|+ +++..++.+|++|++
T Consensus 58 aGd~v~l~l~---~i~~~~v~~G~vl~~ 82 (82)
T cd04089 58 PGENVRLRLK---GIEEEDISPGFVLCS 82 (82)
T ss_pred CCCEEEEEec---CCCHHHCCCCCEEeC
Confidence 9999999998 788889999999974
No 251
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.55 E-value=5e-14 Score=128.50 Aligned_cols=107 Identities=11% Similarity=0.091 Sum_probs=68.6
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch-HHHHHHHHHc---CCceEEEEEeccCCccHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT-SEHLAAVEIM---RLQHIIILQNKVDLIQENVAINQ 268 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~ 268 (531)
..+.++||+|.++. .....+|++++|+|.++. ..-+. ..++..+... ...|+++|.||+|+.......-.
T Consensus 47 ~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~-~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~ 120 (158)
T cd04103 47 HLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENE-ASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVID 120 (158)
T ss_pred EEEEEEECCCCCch-----hHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccC
Confidence 56899999998652 234678999999999875 22222 3333333322 22479999999998421111111
Q ss_pred HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 269 HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 269 ~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
.++..++.++ ...++++++||++|.||+++++.+.+.
T Consensus 121 ~~~~~~~~~~--~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 121 DARARQLCAD--MKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHHH--hCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 1222233222 235789999999999999999998743
No 252
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.54 E-value=2.5e-14 Score=116.59 Aligned_cols=87 Identities=26% Similarity=0.282 Sum_probs=77.0
Q ss_pred CEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEec
Q 039945 319 PNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVP 398 (531)
Q Consensus 319 ~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~a 398 (531)
|+|+|+++|++.+ +|++++|+|.+|++++||++.++|... ...++|++|+.++.++++|.|
T Consensus 1 ~r~~V~~v~~~~g--------~G~vv~G~v~~G~v~~gd~v~~~p~~~-----------~~~~~V~si~~~~~~~~~a~~ 61 (87)
T cd03697 1 FLMPIEDVFSIPG--------RGTVVTGRIERGTIKVGDEVEIVGFGE-----------TLKTTVTGIEMFRKTLDEAEA 61 (87)
T ss_pred CEeeEEEEEeCCC--------cEEEEEEEECCCCCccCCEEEEeCCCC-----------CceEEEEEEEECCcCCCEECC
Confidence 6899999998765 789999999999999999999999621 035889999999999999999
Q ss_pred CceEEEeeecCccccccccccceeeccCC
Q 039945 399 GGLIGVGTTMDPTLTRADRLVGQVLGEVG 427 (531)
Q Consensus 399 G~~v~i~l~~~~~~~~~~i~~G~vl~~~~ 427 (531)
||.|++.|+ +++..++.+|++|++++
T Consensus 62 G~~v~l~l~---~~~~~~v~rG~vl~~~~ 87 (87)
T cd03697 62 GDNVGVLLR---GVKREDVERGMVLAKPG 87 (87)
T ss_pred CCEEEEEEC---CCCHHHcCCccEEecCC
Confidence 999999998 78788999999998764
No 253
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.1e-13 Score=125.34 Aligned_cols=162 Identities=15% Similarity=0.199 Sum_probs=108.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
....+|.++|..|+|||-|+-++.+. +|.++....|-++.... ++++.
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~---~f~e~~~sTIGVDf~~r-----------------------------t~e~~ 54 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDD---TFTESYISTIGVDFKIR-----------------------------TVELD 54 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccC---CcchhhcceeeeEEEEE-----------------------------Eeeec
Confidence 44589999999999999999999753 33444344444443321 22333
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC--ceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL--QHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~--~~iIvviNK~Dl~ 260 (531)
| ....+.+|||+|+++|...+....+.|+++|+|+|.+..........++..++.... -+.++|.||+|+.
T Consensus 55 g-------k~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 55 G-------KTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred c-------eEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 2 126899999999999998899999999999999999864222223334444443322 2478999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCC-EEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAP-VVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~-ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... ..++.+++... .+.| ++++||+.+.|+++.+..|...+
T Consensus 128 ~~~~v--~~~~a~~fa~~---~~~~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 128 EKRVV--STEEAQEFADE---LGIPIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred hheec--CHHHHHHHHHh---cCCcceeecccCCccCHHHHHHHHHHHH
Confidence 54322 12222333322 2455 99999999999999888876433
No 254
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.1e-13 Score=123.58 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=105.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
....++.++|..++|||.|+.+++... |..-....|-++.++..+. ++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~kr---F~~~hd~TiGvefg~r~~~-----------------------------id 51 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKR---FQPVHDLTIGVEFGARMVT-----------------------------ID 51 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccC---ccccccceeeeeeceeEEE-----------------------------Ec
Confidence 345789999999999999999998642 1111112222233322111 11
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce--EEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH--IIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~--iIvviNK~Dl~ 260 (531)
+ ...++++|||+|++.|...+....+.|-++|||.|.+..........++.-++..+.++ ++++.||+||.
T Consensus 52 ~-------k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 52 G-------KQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred C-------ceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 1 12689999999999999999999999999999999976422222223334444443333 56778999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
....+ ..++-+.+.++ ....++.+||++++|+++.+.-...
T Consensus 125 ~rR~V--s~EEGeaFA~e---hgLifmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 125 ARREV--SKEEGEAFARE---HGLIFMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred ccccc--cHHHHHHHHHH---cCceeehhhhhhhhhHHHHHHHHHH
Confidence 54322 23444455543 4567889999999999988776553
No 255
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.53 E-value=7.4e-14 Score=131.02 Aligned_cols=113 Identities=15% Similarity=0.080 Sum_probs=71.7
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch-H-HHHHHHH-HcCCceEEEEEeccCCccHHHH----
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT-S-EHLAAVE-IMRLQHIIILQNKVDLIQENVA---- 265 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt-~-e~l~~~~-~~~~~~iIvviNK~Dl~~~~~~---- 265 (531)
..+.++||||++.|.......+..+|++++++|.+... ..+. . .++..+. .....|+|+|.||+|+.+....
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~-s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~ 127 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD-SLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEY 127 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCccccccc
Confidence 56899999998776544334568899999999987541 1111 1 1233332 2334679999999998532100
Q ss_pred ----HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 266 ----INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 266 ----~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
....++...+.+. ....+++++||++|.|++++++++.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~--~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 128 RTQRFVPIQQGKRVAKE--IGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred ccCCcCCHHHHHHHHHH--hCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 0001122222222 2335799999999999999999998654
No 256
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=2e-13 Score=130.14 Aligned_cols=165 Identities=18% Similarity=0.298 Sum_probs=109.0
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
.++++||.++|.+|+|||||+|+|.+.... . +.+++. |-.| +++. ...+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~--------~-v~~vg~------------~t~~-~~~~---------~~~~ 84 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVK--------E-VSKVGV------------GTDI-TTRL---------RLSY 84 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCc--------e-eeeccc------------CCCc-hhhH---------Hhhc
Confidence 366799999999999999999999853210 0 011110 0111 1111 1112
Q ss_pred CCCccccccceeeEEEEecCChhh-------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC-ceEEEE
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDI-------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL-QHIIIL 253 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~-------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~-~~iIvv 253 (531)
++ ..++||||||..+ +....+..+...|++++++|+.+.. .......+.-+...+. ++++++
T Consensus 85 ~~---------~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~~~~~~i~~ 154 (296)
T COG3596 85 DG---------ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRA-LGTDEDFLRDVIILGLDKRVLFV 154 (296)
T ss_pred cc---------cceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCcc-ccCCHHHHHHHHHhccCceeEEE
Confidence 22 6799999999654 6666777889999999999998752 3333334433333343 789999
Q ss_pred EeccCCccHH----------------HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 254 QNKVDLIQEN----------------VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 254 iNK~Dl~~~~----------------~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
+|.+|...+. .+++..+.+.+++ ....|++.+|+..++|++.|..+|...+|..
T Consensus 155 VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~----q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 155 VTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF----QEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred EehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH----hhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 9999976431 1223333334444 3467999999999999999999999888854
No 257
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.52 E-value=1.5e-13 Score=130.55 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=49.4
Q ss_pred eeEEEEecCChhhHHHHHHHhcccc-CceEEEEeCCCCC-CCcchHHHH-HHHH---Hc-CCceEEEEEeccCCccH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIM-DGALLLIAANESC-PQPQTSEHL-AAVE---IM-RLQHIIILQNKVDLIQE 262 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~a-D~~llVvDa~~~~-~~~qt~e~l-~~~~---~~-~~~~iIvviNK~Dl~~~ 262 (531)
..+.|||||||.+|.......+..+ +++|+|+|+.... ......+++ .++. .. ...|+++|+||+|+...
T Consensus 48 ~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 48 KKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 5799999999999988888888888 9999999998641 111222232 1111 11 23579999999998753
No 258
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.51 E-value=3.3e-13 Score=129.62 Aligned_cols=159 Identities=11% Similarity=0.088 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|..++|||||+.+|++..- .++... |+...+. ..+.+++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f---~~~y~p--Ti~~~~~----------------------------~~~~~~~-- 46 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY---PGSYVP--TVFENYT----------------------------ASFEIDK-- 46 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC---CCccCC--ccccceE----------------------------EEEEECC--
Confidence 6899999999999999999986421 111100 1111110 0011111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHH-cCCceEEEEEeccCCccHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEI-MRLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~-~~~~~iIvviNK~Dl~~~~ 263 (531)
....+.||||+|.+.|.......+..+|++|+|+|.++..........+ ..+.. ....|+|+|.||+|+.+..
T Consensus 47 -----~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~ 121 (222)
T cd04173 47 -----RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL 121 (222)
T ss_pred -----EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch
Confidence 1267899999999988877777889999999999998642111111112 12222 2235799999999996421
Q ss_pred H-HHH---------HHHHHHHHHhcccCCCCCEEEecccCccc-hHHHHHHHHc
Q 039945 264 V-AIN---------QHEAIMKFIQGTVADGAPVVPISAQLKYN-IDVVCEYIVK 306 (531)
Q Consensus 264 ~-~~~---------~~~~i~~~l~~~~~~~~~ii~iSa~~g~g-i~~L~~~L~~ 306 (531)
. ... ..++...+.+. ....+++++||+++.| |+++++....
T Consensus 122 ~~~~~~~~~~~~pIs~e~g~~~ak~--~~~~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 122 ATLRELSKQRLIPVTHEQGTVLAKQ--VGAVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred hhhhhhhhccCCccCHHHHHHHHHH--cCCCEEEEcCCCcCCcCHHHHHHHHHH
Confidence 1 110 11122222222 2335899999999985 9999988764
No 259
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.51 E-value=7.8e-14 Score=127.20 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=76.4
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHH-HcC-CceEEEEEeccCCccHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVE-IMR-LQHIIILQNKVDLIQENVAINQHE 270 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~~-~~~iIvviNK~Dl~~~~~~~~~~~ 270 (531)
..+.|||++|++.|.......+..+|++|+|+|.+..........++..+. ... ..|++++.||.|+.+...+ ..+
T Consensus 48 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v--~~~ 125 (162)
T PF00071_consen 48 VNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREV--SVE 125 (162)
T ss_dssp EEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSS--CHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc--hhh
Confidence 679999999999887766667899999999999875411112223333333 333 3689999999998762221 112
Q ss_pred HHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 271 AIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 271 ~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
+..++.+. ...+++.+||+++.|+.+++..+.+.
T Consensus 126 ~~~~~~~~---~~~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 126 EAQEFAKE---LGVPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp HHHHHHHH---TTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHH---hCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 33333332 23899999999999999999988754
No 260
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.50 E-value=1.1e-13 Score=111.70 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=75.0
Q ss_pred CEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEec
Q 039945 319 PNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVP 398 (531)
Q Consensus 319 ~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~a 398 (531)
|+|+|+++|++.+ .|+++.|+|.+|++++||++.++|++ ..++|++|+.++.++++|.|
T Consensus 1 lr~~i~~~~~~~~--------~g~vv~G~v~sG~i~~g~~v~~~p~~-------------~~~~V~sI~~~~~~~~~a~a 59 (83)
T cd03696 1 FRLPIDRVFTVKG--------QGTVVTGTVLSGSVKVGDKVEILPLG-------------EETRVRSIQVHGKDVEEAKA 59 (83)
T ss_pred CEEEEEEEEEcCC--------cEEEEEEEEeecEEeCCCEEEECCCC-------------ceEEEEEEEECCcCcCEEcC
Confidence 6899999998755 78999999999999999999999974 35899999999999999999
Q ss_pred CceEEEeeecCccccccccccceeecc
Q 039945 399 GGLIGVGTTMDPTLTRADRLVGQVLGE 425 (531)
Q Consensus 399 G~~v~i~l~~~~~~~~~~i~~G~vl~~ 425 (531)
||.|++.|+ +++..++.+|++|+.
T Consensus 60 Gd~v~i~l~---~~~~~~i~~G~vl~~ 83 (83)
T cd03696 60 GDRVALNLT---GVDAKDLERGDVLSS 83 (83)
T ss_pred CCEEEEEEc---CCCHHHcCCccEEcC
Confidence 999999997 777789999999863
No 261
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.50 E-value=3e-13 Score=127.64 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=70.7
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHH-HHHHHHH-cCCceEEEEEeccCCccHHH------
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSE-HLAAVEI-MRLQHIIILQNKVDLIQENV------ 264 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e-~l~~~~~-~~~~~iIvviNK~Dl~~~~~------ 264 (531)
..+.||||||.+++. ....++.+|++|+|+|.++......... ++..++. ....|+|+|.||+|+.+...
T Consensus 66 v~l~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~ 143 (195)
T cd01873 66 VSLRLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRA 143 (195)
T ss_pred EEEEEEeCCCChhhh--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhc
Confidence 689999999987543 2235689999999999976521111211 3333332 22357999999999864200
Q ss_pred -----------HHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 265 -----------AINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 265 -----------~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
..-..++..++.+. .+.+++++||++|.|++++++.+.+
T Consensus 144 ~~~~~~~~~~~~~V~~~e~~~~a~~---~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 144 RRPLARPIKNADILPPETGRAVAKE---LGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred ccccccccccCCccCHHHHHHHHHH---hCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 00112233333332 2458999999999999999999874
No 262
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.1e-12 Score=120.63 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=107.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|.++|.+++|||.|+-++....- ...... |+-+.|.. .++.++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f---~~~~~s--TiGIDFk~---------------------------kti~l~ 57 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSF---NTSFIS--TIGIDFKI---------------------------KTIELD 57 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccC---cCCccc--eEEEEEEE---------------------------EEEEeC
Confidence 4558999999999999999999974311 111112 22222211 112222
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvviNK~Dl~ 260 (531)
| ....+.+|||+|.+.|...+...++.|+.++||+|.+........+.++..++... ..+.++|.||+|+.
T Consensus 58 g-------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 58 G-------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE 130 (207)
T ss_pred C-------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc
Confidence 2 12689999999999999999999999999999999976532333344444554432 23589999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
....+ ..+.-+++..+ .+++++++||++|.||++.+-.|.+.+
T Consensus 131 ~~R~V--~~e~ge~lA~e---~G~~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 131 EKRQV--SKERGEALARE---YGIKFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred ccccc--cHHHHHHHHHH---hCCeEEEccccCCCCHHHHHHHHHHHH
Confidence 63211 11222233322 268999999999999999888877544
No 263
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.47 E-value=3.9e-13 Score=127.15 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|++|+|||||+|+|+|........ ...+.|.... .....+.|
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~-~~~~~T~~~~-----------------------------~~~~~~~~-- 48 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKL-SASSVTKTCQ-----------------------------KESAVWDG-- 48 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccccc-CCCCcccccc-----------------------------eeeEEECC--
Confidence 479999999999999999999874311000 0112222111 11122232
Q ss_pred cccccceeeEEEEecCChhhH-------HHHHH----HhccccCceEEEEeCCCCCCCcchHHHHHHHHH-cC---CceE
Q 039945 186 NCRMKLLRHVSFVDCPGHDIL-------MATML----NGAAIMDGALLLIAANESCPQPQTSEHLAAVEI-MR---LQHI 250 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~-------~~~~~----~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~-~~---~~~i 250 (531)
+.+++|||||..+. ...+. .....+|++|+|+|+.. ........+..++. +| .+++
T Consensus 49 -------~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~--~t~~d~~~l~~l~~~fg~~~~~~~ 119 (196)
T cd01852 49 -------RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR--FTEEEEQAVETLQELFGEKVLDHT 119 (196)
T ss_pred -------eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC--cCHHHHHHHHHHHHHhChHhHhcE
Confidence 78999999995432 22222 23467899999999876 34455555655544 34 2578
Q ss_pred EEEEeccCCccHHHHHHH----HHHHHHHHhcccCCCCCEEEe-----cccCccchHHHHHHHHccCCC
Q 039945 251 IILQNKVDLIQENVAINQ----HEAIMKFIQGTVADGAPVVPI-----SAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 251 IvviNK~Dl~~~~~~~~~----~~~i~~~l~~~~~~~~~ii~i-----Sa~~g~gi~~L~~~L~~~l~~ 310 (531)
|+++|+.|......+++. ...++.+++.++. .++.. |+..+.++++|++.|.+.++.
T Consensus 120 ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~---r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 120 IVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG---RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC---eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 999999997754333322 2344444443221 22222 466788999999999987764
No 264
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.47 E-value=7.3e-13 Score=127.10 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=97.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH-CCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~-g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
...++|+++|++|+|||||+++++ |..... ..-|+...+....+ .
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~------~~~t~~~~~~~~~~-~--------------------------- 52 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKK------YIPTLGVEVHPLKF-Y--------------------------- 52 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCC------CCCccceEEEEEEE-E---------------------------
Confidence 345899999999999999997654 542211 11122111111000 0
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH-HHHHHH-HHcCCceEEEEEeccCC
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS-EHLAAV-EIMRLQHIIILQNKVDL 259 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~-e~l~~~-~~~~~~~iIvviNK~Dl 259 (531)
.......+.++||||+++|.......+..+|++++|+|.++. ...+.. .++..+ ......|++++.||+|+
T Consensus 53 ------~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl 125 (215)
T PTZ00132 53 ------TNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSR-ITYKNVPNWHRDIVRVCENIPIVLVGNKVDV 125 (215)
T ss_pred ------ECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhCCCCCEEEEEECccC
Confidence 001126899999999988866666667889999999999864 222111 222222 22234568889999998
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.....+.. .+.. .....++++||++|.|+++++.+|.+.+.
T Consensus 126 ~~~~~~~~~~----~~~~---~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 126 KDRQVKARQI----TFHR---KKNLQYYDISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred ccccCCHHHH----HHHH---HcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 6432111111 1222 13467999999999999999998886553
No 265
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.46 E-value=2.8e-13 Score=116.70 Aligned_cols=107 Identities=20% Similarity=0.241 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++|.+|+|||||+|+|++.... . +.+.+++|+.... ..+.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~---------~-----------------~~~~~~~T~~~~~-----~~~~~----- 44 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA---------K-----------------VSNIPGTTRDPVY-----GQFEY----- 44 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS---------E-----------------ESSSTTSSSSEEE-----EEEEE-----
T ss_pred CEEEECCCCCCHHHHHHHHhccccc---------c-----------------ccccccceeeeee-----eeeee-----
Confidence 5899999999999999999985311 0 0112333333200 00111
Q ss_pred ccccceeeEEEEecCChhh---------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEec
Q 039945 187 CRMKLLRHVSFVDCPGHDI---------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK 256 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~---------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK 256 (531)
....+.|+||||..+ ......+.+..+|++++|+|++.. ......+.+..++ ..+|+++|+||
T Consensus 45 ----~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~-~~~~~~~~~~~l~--~~~~~i~v~NK 116 (116)
T PF01926_consen 45 ----NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNP-ITEDDKNILRELK--NKKPIILVLNK 116 (116)
T ss_dssp ----TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSH-SHHHHHHHHHHHH--TTSEEEEEEES
T ss_pred ----ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHh--cCCCEEEEEcC
Confidence 226789999999521 344566677899999999998763 3333444555554 44789999998
No 266
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.46 E-value=3.3e-13 Score=112.85 Aligned_cols=138 Identities=18% Similarity=0.254 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+++++|.+++|||||.+.|-|..+. ..-|+.+.| .
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l-------ykKTQAve~----------------------------------~--- 37 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL-------YKKTQAVEF----------------------------------N--- 37 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh-------hcccceeec----------------------------------c---
Confidence 47899999999999999999987531 112222211 1
Q ss_pred cccccceeeEEEEecCC----hhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 186 NCRMKLLRHVSFVDCPG----HDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG----~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
.=-.||||| |+.+-...+..+..+|++++|-.+++++ +.-.. -+...+.+|+|-+++|+|+..
T Consensus 38 --------d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~-s~f~p----~f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 38 --------DKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPE-SRFPP----GFLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred --------CccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcc-ccCCc----ccccccccceEEEEecccccc
Confidence 123699999 6666666677778999999999998762 11111 122345577999999999997
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
..++....+.+.+. ...++|.+|+....|+++|+++|..
T Consensus 105 d~dI~~~~~~L~ea------Ga~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 105 DADISLVKRWLREA------GAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred hHhHHHHHHHHHHc------CCcceEEEeccCcccHHHHHHHHHh
Confidence 55555544444432 3568999999999999999999974
No 267
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=5.4e-13 Score=114.52 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=108.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHC-CCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISG-VQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g-~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
+-..+|+++|+.++|||.|+.+++. ... .-.|.|+.+.+- ..++++
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfp------pgqgatigvdfm---------------------------iktvev 51 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFP------PGQGATIGVDFM---------------------------IKTVEV 51 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCC------CCCCceeeeeEE---------------------------EEEEEE
Confidence 3457999999999999999999983 221 134555555431 112233
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce--EEEEEeccCC
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH--IIILQNKVDL 259 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~--iIvviNK~Dl 259 (531)
.| .+.++.+|||+|+++|...+.+..+.|+.++||.|.+......-..+++..++.....+ -|+|.||+|+
T Consensus 52 ~g-------ekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~ 124 (213)
T KOG0095|consen 52 NG-------EKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDL 124 (213)
T ss_pred CC-------eEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccch
Confidence 32 23789999999999999999999999999999999985322223345554444433222 3788999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.+..+ ..+++.+.+.. ....-++.+||+..+|++.|+..+...+
T Consensus 125 ~drre---vp~qigeefs~--~qdmyfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 125 ADRRE---VPQQIGEEFSE--AQDMYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hhhhh---hhHHHHHHHHH--hhhhhhhhhcccchhhHHHHHHHHHHHH
Confidence 76532 22223222211 1244678999999999999998876444
No 268
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=99.45 E-value=1.1e-12 Score=104.56 Aligned_cols=88 Identities=50% Similarity=0.994 Sum_probs=72.3
Q ss_pred eEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCceEEEEeCCeeecccCCEEEEEecc
Q 039945 433 FVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSRGEKIALSRRV 512 (531)
Q Consensus 433 ~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~~v~~~l~~p~~~~~g~r~ilr~~~ 512 (531)
+++++.++++|++..+.+. +..+.+||+.|+.+++++|+....|+|.+++++.+++.|.+|+|++.|+|++|+++.
T Consensus 1 ~~~l~i~~~Ll~r~vg~~~----~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k~d~~~v~L~~Pvc~~~g~rvaiSRri 76 (88)
T PF09173_consen 1 YTELEIEYHLLERVVGVKE----KEAKVEPIKKGEVLMLNIGSATTGGVVTSVKKDMAEVELKKPVCAEKGERVAISRRI 76 (88)
T ss_dssp EEEEEEEEEE-SSCSSSSS-----CCS-----TTEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEE-STTSEEEEEEEE
T ss_pred CEEEEEEEEEehhhhCccc----cceecccCCCCCEEEEEEccccccEEEEEEECCEEEEEecCCeEcCcCCeeeeehhc
Confidence 4678889999987655443 134578999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEE
Q 039945 513 EKHWRLIGWGQI 524 (531)
Q Consensus 513 ~~~~~tig~G~I 524 (531)
+..||+||||.|
T Consensus 77 ~~rWRLIG~G~I 88 (88)
T PF09173_consen 77 GNRWRLIGWGII 88 (88)
T ss_dssp TTSEEEEEEEEE
T ss_pred cCeEEEEEEEeC
Confidence 999999999987
No 269
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.44 E-value=7.5e-13 Score=115.91 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=104.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|.++|.-||||||++++|++...+. +.-..+| .-.++.+.
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~--------i~pt~gf---------------------------~Iktl~~~ 58 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDT--------ISPTLGF---------------------------QIKTLEYK 58 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccc--------cCCccce---------------------------eeEEEEec
Confidence 346899999999999999999999875421 1111111 00112222
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-H---HHHcCCceEEEEEeccC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-A---VEIMRLQHIIILQNKVD 258 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~---~~~~~~~~iIvviNK~D 258 (531)
+ ..++++|..|+..+..-.......+|++|+|||.++.....+...++. + -+..| .+++++.||.|
T Consensus 59 ~---------~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG-~~~Lvlank~d 128 (185)
T KOG0073|consen 59 G---------YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAG-APLLVLANKQD 128 (185)
T ss_pred c---------eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcC-CceEEEEecCc
Confidence 2 789999999998877777888899999999999976522333333331 1 12234 56899999999
Q ss_pred CccHHHHHHHH--HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 259 LIQENVAINQH--EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 259 l~~~~~~~~~~--~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
+...-..+.+. -.+.++++ ....+++-+||.+|+++.+=++||.+.
T Consensus 129 l~~~l~~~~i~~~~~L~~l~k---s~~~~l~~cs~~tge~l~~gidWL~~~ 176 (185)
T KOG0073|consen 129 LPGALSLEEISKALDLEELAK---SHHWRLVKCSAVTGEDLLEGIDWLCDD 176 (185)
T ss_pred CccccCHHHHHHhhCHHHhcc---ccCceEEEEeccccccHHHHHHHHHHH
Confidence 98543222222 23334333 357899999999998877777776543
No 270
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.44 E-value=8.9e-13 Score=105.68 Aligned_cols=81 Identities=22% Similarity=0.144 Sum_probs=70.7
Q ss_pred CEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEec
Q 039945 319 PNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVP 398 (531)
Q Consensus 319 ~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~a 398 (531)
|||+|.++|+..+ .|..++|+|.+|.+++||++.++|++ ..++|++|+.++.++++|.|
T Consensus 1 lr~~V~dv~k~~~--------~~~~v~Gkv~~G~v~~Gd~v~~~P~~-------------~~~~V~si~~~~~~~~~a~a 59 (81)
T cd03695 1 FRFPVQYVIRPNA--------DFRGYAGTIASGSIRVGDEVVVLPSG-------------KTSRVKSIETFDGELDEAGA 59 (81)
T ss_pred CEeeEEEEEeeCC--------CcEEEEEEEccceEECCCEEEEcCCC-------------CeEEEEEEEECCcEeCEEcC
Confidence 6899999997543 56679999999999999999999974 35899999999999999999
Q ss_pred CceEEEeeecCccccccccccceeecc
Q 039945 399 GGLIGVGTTMDPTLTRADRLVGQVLGE 425 (531)
Q Consensus 399 G~~v~i~l~~~~~~~~~~i~~G~vl~~ 425 (531)
||+|++.|+ + ..++.+|++||.
T Consensus 60 Gd~v~l~l~---~--~~~i~~G~vl~~ 81 (81)
T cd03695 60 GESVTLTLE---D--EIDVSRGDVIVA 81 (81)
T ss_pred CCEEEEEEC---C--ccccCCCCEEeC
Confidence 999999986 2 567999999973
No 271
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=128.25 Aligned_cols=159 Identities=19% Similarity=0.184 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
--|+++|.||+|||||+++++..... + .+.|.||.. +....+.+.+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPK-------------I--------------adYpFTTL~-----PnLGvV~~~~-- 205 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPK-------------I--------------ADYPFTTLV-----PNLGVVRVDG-- 205 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCc-------------c--------------cCCcccccc-----CcccEEEecC--
Confidence 46899999999999999999976421 1 122333333 2233333221
Q ss_pred cccccceeeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCCCCCCC--cchHHH-HHHHH----HcCCceEE
Q 039945 186 NCRMKLLRHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAANESCPQ--PQTSEH-LAAVE----IMRLQHII 251 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~~~~~~--~qt~e~-l~~~~----~~~~~~iI 251 (531)
...|.+-|.||.- -.--..++.+..|.++++|||.+..... .+..+. ...++ .+-.+|.+
T Consensus 206 ------~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~i 279 (369)
T COG0536 206 ------GESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRI 279 (369)
T ss_pred ------CCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceE
Confidence 2679999999942 1234556777889999999999853111 111111 12222 23347889
Q ss_pred EEEeccCCc-cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 252 ILQNKVDLI-QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 252 vviNK~Dl~-~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
||+||+|++ +.+..+...+.+.+.. ......+|||.+++|+++|+..+.+.+.
T Consensus 280 vv~NKiD~~~~~e~~~~~~~~l~~~~-----~~~~~~~ISa~t~~g~~~L~~~~~~~l~ 333 (369)
T COG0536 280 VVLNKIDLPLDEEELEELKKALAEAL-----GWEVFYLISALTREGLDELLRALAELLE 333 (369)
T ss_pred EEEeccCCCcCHHHHHHHHHHHHHhc-----CCCcceeeehhcccCHHHHHHHHHHHHH
Confidence 999999955 4444444444444332 1222333999999999999988876554
No 272
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.40 E-value=2e-12 Score=112.61 Aligned_cols=163 Identities=20% Similarity=0.248 Sum_probs=102.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|.+||..|+|||||+-+++.... +. ....||-+.|.. +.+ .++|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~f---d~--~~~~tIGvDFkv-k~m--------------------------~vdg- 57 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTF---DD--LHPTTIGVDFKV-KVM--------------------------QVDG- 57 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhccc---Cc--cCCceeeeeEEE-EEE--------------------------EEcC-
Confidence 48999999999999999999975422 22 233334333211 111 1121
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc-e--EEEEEeccCCcc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ-H--IIILQNKVDLIQ 261 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~-~--iIvviNK~Dl~~ 261 (531)
...++.||||+|+++|...+-...+.|..+|+|.|.+..........++..+...... . .++|.||+|..+
T Consensus 58 ------~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 58 ------KRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred ------ceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 1268999999999999888888889999999999998642111122223334433221 1 367899999753
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC-CCC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI-PIP 311 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l-~~~ 311 (531)
.. .-..++-.++.+. ...-|++.||++.+|+...++.|.+.+ ..|
T Consensus 132 ~R--~V~reEG~kfAr~---h~~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 132 ER--VVDREEGLKFARK---HRCLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred cc--cccHHHHHHHHHh---hCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 21 1122333344432 346789999999999988777766543 344
No 273
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.39 E-value=6e-12 Score=126.93 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=40.9
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHH-HHHccCCC
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCE-YIVKKIPI 310 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~-~L~~~l~~ 310 (531)
+|+|+++||+|+.+.+... +.+... ....+++++||+.+.|+++|.+ .+.+++|.
T Consensus 215 KPvI~VlNK~Dl~~~~~~~---~~l~~~-----~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 215 KPMVIAANKADIPDAENNI---SKLRLK-----YPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred CcEEEEEEHHHccChHHHH---HHHHhh-----CCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 5899999999987543322 223221 2346799999999999999998 69888874
No 274
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.37 E-value=4.1e-11 Score=119.09 Aligned_cols=148 Identities=17% Similarity=0.227 Sum_probs=89.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccc-----eecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNE-----LERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLC 179 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e-----~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (531)
.++|+++|++|+|||||+|+|++........+ ....-|+.+...... +
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~---------------------------i 56 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAE---------------------------I 56 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEE---------------------------E
Confidence 47999999999999999999987643211100 001111111110000 0
Q ss_pred CCCCCccccccceeeEEEEecCChhhH---------------------HHHHHH-----hc--cccCceEEEEeCCCCCC
Q 039945 180 DVPGFENCRMKLLRHVSFVDCPGHDIL---------------------MATMLN-----GA--AIMDGALLLIAANESCP 231 (531)
Q Consensus 180 ~~~g~~~~~~~~~~~i~liDtPG~~~~---------------------~~~~~~-----~l--~~aD~~llVvDa~~~~~ 231 (531)
+..| ....+++|||||..++ +..... .+ ..+|+++++++++....
T Consensus 57 ~~~g-------~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l 129 (276)
T cd01850 57 EENG-------VKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGL 129 (276)
T ss_pred EECC-------EEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCC
Confidence 0111 1157999999995332 111111 11 25789999999875325
Q ss_pred CcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecc
Q 039945 232 QPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISA 291 (531)
Q Consensus 232 ~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa 291 (531)
.+...+.+..+.. + .++|+|+||+|+...++.....+.+.+.+.. .++++++...
T Consensus 130 ~~~D~~~lk~l~~-~-v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~---~~i~~~~~~~ 184 (276)
T cd01850 130 KPLDIEFMKRLSK-R-VNIIPVIAKADTLTPEELKEFKQRIMEDIEE---HNIKIYKFPE 184 (276)
T ss_pred CHHHHHHHHHHhc-c-CCEEEEEECCCcCCHHHHHHHHHHHHHHHHH---cCCceECCCC
Confidence 5555666666653 4 4699999999998877776777777777764 3467776554
No 275
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.37 E-value=6.7e-12 Score=104.76 Aligned_cols=80 Identities=14% Similarity=0.267 Sum_probs=70.6
Q ss_pred ccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEe-----cC----c--------eEE
Q 039945 429 LPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAV-----KN----D--------LAK 491 (531)
Q Consensus 429 ~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i-----~~----~--------~v~ 491 (531)
++..+++|+|++++|++ +.+|..|+++.+|+++++++|++..+ .+ . .|+
T Consensus 1 ~~k~~~~f~A~v~vl~~--------------~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~~~~~~p~~l~~g~~a~v~ 66 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDH--------------PKPISPGYQPVLHIHTADVPCRIVKIISKIDTGKKKPKFLKPGDRAVVE 66 (99)
T ss_dssp SSEEEEEEEEEEEESSG--------------SS-BETTEEEEEEETTEEEEEEEEEEEEEESTTTEE-SEB-TTEEEEEE
T ss_pred CCcccCEEEEEEEEEcC--------------CccccCCCccceEEeeceeeEEEEeeeeccccccccccccccccccccc
Confidence 35678999999999986 37899999999999999999999999 21 1 788
Q ss_pred EEeCCeeecccCCEEEEEeccCCCceEEEEEEEee
Q 039945 492 LQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 492 ~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
|.+.+|+|+++|+||+||| +++|+|+|.|++
T Consensus 67 l~~~~pi~ve~~~Rf~lR~----~~~Tia~G~V~~ 97 (99)
T PF03143_consen 67 LEFQKPICVEPFSRFILRD----GGKTIAVGVVTK 97 (99)
T ss_dssp EEEEEEEEETTTTEEEEEE----TTEEEEEEEEEE
T ss_pred eeeccceeeecCceEEEcc----CCeEEEEEEEEE
Confidence 8999999999999999997 889999999975
No 276
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.36 E-value=1.6e-12 Score=111.62 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=107.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH-CCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~-g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
..+.+.++|--++|||||+|.+. |.... ..+-|. ++ ..+
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~e------dmiptv--Gf---nmr----------------------------- 58 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLE------DMIPTV--GF---NMR----------------------------- 58 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchh------hhcccc--cc---eeE-----------------------------
Confidence 34789999999999999999875 33221 111111 11 011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHH--HcCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVE--IMRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~--~~~~~~iIvviNK~Dl 259 (531)
++...+..+.++|.||.+.|-....+..+.+++++++|||.+...-.-.++.+ .++. .+...|++|..||.|+
T Consensus 59 ----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~ 134 (186)
T KOG0075|consen 59 ----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDL 134 (186)
T ss_pred ----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccC
Confidence 11122378999999999999999999999999999999998754333344433 2222 2333569999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.++-......+++. |.......+.++.||+++..||+.+++||.++-
T Consensus 135 ~~AL~~~~li~rmg--L~sitdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 135 PGALSKIALIERMG--LSSITDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred cccccHHHHHHHhC--ccccccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 87644333333331 111113456789999999999999999998754
No 277
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=9.3e-12 Score=106.89 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.++.++|+..+|||||+-+.++..- .. .--.|..+.+.--.+|..+.
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSF---t~--afvsTvGidFKvKTvyr~~k---------------------------- 68 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSF---TS--AFVSTVGIDFKVKTVYRSDK---------------------------- 68 (193)
T ss_pred eeEEEEccCCccchhhhHHhhcccc---cc--ceeeeeeeeEEEeEeeeccc----------------------------
Confidence 5899999999999999999986421 10 11112222222112332210
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHH-HHHHHHH--cCCceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSE-HLAAVEI--MRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e-~l~~~~~--~~~~~iIvviNK~Dl~~~ 262 (531)
...+.+|||+|.+.|...+-..++++++.||+.|.+... .-...+ +.-.++. ....++|+|.||||+.++
T Consensus 69 ------RiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNee-Sf~svqdw~tqIktysw~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 69 ------RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE-SFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE 141 (193)
T ss_pred ------EEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHH-HHHHHHHHHHHheeeeccCceEEEEecccCCccc
Confidence 157999999999998888888889999999999997642 211212 2222221 123569999999999754
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
..+ ..+..+.+..+. .+.+++.||+.+.|++.+++.|...+.
T Consensus 142 Rvi--s~e~g~~l~~~L---GfefFEtSaK~NinVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 142 RVI--SHERGRQLADQL---GFEFFETSAKENINVKQVFERLVDIIC 183 (193)
T ss_pred eee--eHHHHHHHHHHh---ChHHhhhcccccccHHHHHHHHHHHHH
Confidence 221 112222222221 458999999999999999999876543
No 278
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=9.3e-12 Score=113.93 Aligned_cols=160 Identities=21% Similarity=0.191 Sum_probs=102.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
....+|+++|.+++|||-|+.+++... |..+... |+-+.+... .+.++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnE---F~~~Sks--TIGvef~t~---------------------------t~~vd 59 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNE---FSLESKS--TIGVEFATR---------------------------TVNVD 59 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccc---cCccccc--ceeEEEEee---------------------------ceeec
Confidence 344789999999999999999998532 2222233 333332211 11222
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC--ceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL--QHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~--~~iIvviNK~Dl~ 260 (531)
| ......||||+|+++|...+-...+.|-++|+|.|.+..........++..++..-. -.+++|.||+||.
T Consensus 60 ~-------k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 60 G-------KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred C-------cEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 2 126789999999999987777777999999999999764211222334444544432 2468889999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
..... ..++.+.+.+ .....++.+||+.+.|+++.++.+..
T Consensus 133 ~lraV--~te~~k~~Ae---~~~l~f~EtSAl~~tNVe~aF~~~l~ 173 (222)
T KOG0087|consen 133 HLRAV--PTEDGKAFAE---KEGLFFLETSALDATNVEKAFERVLT 173 (222)
T ss_pred hcccc--chhhhHhHHH---hcCceEEEecccccccHHHHHHHHHH
Confidence 51110 1122222222 24578999999999999988776654
No 279
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.32 E-value=3.4e-11 Score=115.58 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|..|+|||||+++|.+.... .+....+....... +.. .
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~---~~~~~t~~~~~~~~-----------------~~~-------------~--- 49 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP---EGYPPTIGNLDPAK-----------------TIE-------------P--- 49 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc---ccCCCceeeeeEEE-----------------EEE-------------e---
Confidence 79999999999999999999965421 11111111111100 000 0
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCC-CCCCcchHHHHHHHHHcC--CceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE-SCPQPQTSEHLAAVEIMR--LQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~-~~~~~qt~e~l~~~~~~~--~~~iIvviNK~Dl~~~ 262 (531)
......+.+|||+|+++|...+......++++++++|... .....-..++...+.... ..+++++.||+|+...
T Consensus 50 ---~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 50 ---YRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred ---CCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 0002679999999999998888888899999999999885 212223334444555444 3579999999999865
Q ss_pred HHHHHH----------HHHHHHHHhcccCCCCCEEEeccc--CccchHHHHHHHHccCC
Q 039945 263 NVAINQ----------HEAIMKFIQGTVADGAPVVPISAQ--LKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 263 ~~~~~~----------~~~i~~~l~~~~~~~~~ii~iSa~--~g~gi~~L~~~L~~~l~ 309 (531)
...... .................++.+|++ .+.++.+++..+...+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 127 QSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred hhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 321111 111111111110123338999999 99999999888776553
No 280
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.31 E-value=1.7e-11 Score=123.68 Aligned_cols=108 Identities=21% Similarity=0.097 Sum_probs=72.2
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAI 272 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i 272 (531)
..+.||||+|...-. ...+..+|++++|++...+. .-|... ...++ +. -|+|+||+|+...........++
T Consensus 149 ~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd-~iq~~k-~gi~E---~a-DIiVVNKaDl~~~~~a~~~~~el 219 (332)
T PRK09435 149 YDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGD-ELQGIK-KGIME---LA-DLIVINKADGDNKTAARRAAAEY 219 (332)
T ss_pred CCEEEEECCCCccch---hHHHHhCCEEEEEecCCchH-HHHHHH-hhhhh---hh-heEEeehhcccchhHHHHHHHHH
Confidence 789999999976322 22356799999998743331 111100 00111 12 28999999998765555666677
Q ss_pred HHHHhccc----CCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 273 MKFIQGTV----ADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 273 ~~~l~~~~----~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.+.-.. ....|++++||++|.|+++|++.|.++++
T Consensus 220 ~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 220 RSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 76664211 13368999999999999999999998765
No 281
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=5.7e-12 Score=111.54 Aligned_cols=174 Identities=18% Similarity=0.182 Sum_probs=109.5
Q ss_pred ccCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCC
Q 039945 101 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCD 180 (531)
Q Consensus 101 ~~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 180 (531)
.++....|.|+|.-|+||||++.++=......+..=.-..||..++. ...+++
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL---------------------------nig~i~ 65 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL---------------------------NIGTIE 65 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce---------------------------eeccee
Confidence 34556889999999999999999873221100000001123332222 122333
Q ss_pred CCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH---HHHHHcCCceEEEEEecc
Q 039945 181 VPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL---AAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 181 ~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l---~~~~~~~~~~iIvviNK~ 257 (531)
+.. ..+.|||.-|.+..-.........|+++++||||++....+.....+ ..-+.+..-|+++.+||-
T Consensus 66 v~~---------~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankq 136 (197)
T KOG0076|consen 66 VCN---------APLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQ 136 (197)
T ss_pred ecc---------ceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchh
Confidence 332 68999999999876666666778999999999998732222222111 112222234589999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
|+.+.....+...-+.. .+.......++.||||++|+||++-.+|+.+.++..
T Consensus 137 d~q~~~~~~El~~~~~~-~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 137 DLQNAMEAAELDGVFGL-AELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhhhhHHHHHHHhhh-hhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 99876544443333321 222234578999999999999999999999877643
No 282
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.30 E-value=9.8e-12 Score=114.27 Aligned_cols=69 Identities=25% Similarity=0.404 Sum_probs=43.9
Q ss_pred eeEEEEecCChhhHHHHHHHh---ccccCceEEEEeCCCCCCCcc---hHHHH-HHHHH----cCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHDILMATMLNG---AAIMDGALLLIAANESCPQPQ---TSEHL-AAVEI----MRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~---l~~aD~~llVvDa~~~~~~~q---t~e~l-~~~~~----~~~~~iIvviNK~Dl~~ 261 (531)
..+.+||+|||.+........ +..+.++|||||++.. ..+ +.+++ .++.. .+.+|++|++||.|+..
T Consensus 49 ~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~--~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 49 KKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD--QKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp TCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH--HHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred CEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc--hhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 689999999998766555554 7889999999999742 222 22333 11111 13468999999999986
Q ss_pred HH
Q 039945 262 EN 263 (531)
Q Consensus 262 ~~ 263 (531)
..
T Consensus 127 A~ 128 (181)
T PF09439_consen 127 AK 128 (181)
T ss_dssp --
T ss_pred cC
Confidence 43
No 283
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=8.9e-11 Score=120.55 Aligned_cols=211 Identities=20% Similarity=0.227 Sum_probs=142.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+.+-||++|+||.|||||+..|....+...-.+....||+-.+-
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK----------------------------------- 111 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGK----------------------------------- 111 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecc-----------------------------------
Confidence 455778999999999999999997544322223334445543221
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~ 262 (531)
+++++|+.||. -+..|+..+..||++||+||++-| ....|.+++.++...|.|.++-|++..|+...
T Consensus 112 ---------~RRiTflEcp~---Dl~~miDvaKIaDLVlLlIdgnfG-fEMETmEFLnil~~HGmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 112 ---------TRRITFLECPS---DLHQMIDVAKIADLVLLLIDGNFG-FEMETMEFLNILISHGMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred ---------eeEEEEEeChH---HHHHHHhHHHhhheeEEEeccccC-ceehHHHHHHHHhhcCCCceEEEEeecccccC
Confidence 27999999993 356788888999999999999998 78899999999999999999999999999743
Q ss_pred -HHHHHHHHHHHHHHhcccCCCCCEEEecccCcc-----chHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCC-c
Q 039945 263 -NVAINQHEAIMKFIQGTVADGAPVVPISAQLKY-----NIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGF-E 335 (531)
Q Consensus 263 -~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~-----gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~-~ 335 (531)
..+......+...+-........+|.+|...+- -|-.|-.+|.-.--.|.++.+..+.+..++.-++..|-. .
T Consensus 179 ~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~nGRYpDreilnLsRfisVMKfRPl~Wrn~HPy~laDR~~Dlt~p~~ie 258 (1077)
T COG5192 179 PSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVENGRYPDREILNLSRFISVMKFRPLEWRNMHPYVLADRVDDLTLPVDIE 258 (1077)
T ss_pred hHHHHHHHHHHhhhHHHHHcCCceEEEecccccCCCCCHHHHHHHHHHhhhcccccccccCCceeehhhhccccchhhhh
Confidence 333333333322111111346778999977543 244555555533345777888888888887766544321 1
Q ss_pred ccCCCc--eEEEEEEEe-eeeccCCEEEE
Q 039945 336 VDDIRG--GVAGGSILR-GVLKVNQFIEV 361 (531)
Q Consensus 336 ~~~~~G--~v~~G~v~~-G~l~~Gd~v~i 361 (531)
..+.+| ..++|.+.. |-.+....|.|
T Consensus 259 q~~kv~rki~vYGYlhGt~Lp~~d~~vHI 287 (1077)
T COG5192 259 QNPKVGRKITVYGYLHGTGLPRKDMEVHI 287 (1077)
T ss_pred hccccCceEEEEEEecCCCCCCCCceEec
Confidence 112233 467899886 44555555554
No 284
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=7.3e-11 Score=101.96 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=101.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.+++.++|+.+.|||.|+.++.... |+. ....|+.+.+.+ ..+++.|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~k---fkD--dssHTiGveFgS---------------------------rIinVGg- 55 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENK---FKD--DSSHTIGVEFGS---------------------------RIVNVGG- 55 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhh---hcc--cccceeeeeecc---------------------------eeeeecC-
Confidence 4789999999999999999998432 111 222333333211 1122332
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce--EEEEEeccCCccH
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH--IIILQNKVDLIQE 262 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~--iIvviNK~Dl~~~ 262 (531)
...++.+|||+|+++|..-+....+.|-.++||.|++........-.++.-++.+.-+. +|++.||-|+...
T Consensus 56 ------K~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 56 ------KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred ------cEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 12689999999999999888889999999999999986421112223344445554333 3556799999654
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHH
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYI 304 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L 304 (531)
.+ -...+...+..+ +..-+..+||++|+|+++.+-..
T Consensus 130 R~--VtflEAs~FaqE---nel~flETSa~TGeNVEEaFl~c 166 (214)
T KOG0086|consen 130 RE--VTFLEASRFAQE---NELMFLETSALTGENVEEAFLKC 166 (214)
T ss_pred hh--hhHHHHHhhhcc---cceeeeeecccccccHHHHHHHH
Confidence 32 233444455432 34578899999999998765443
No 285
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.27 E-value=4.6e-11 Score=99.44 Aligned_cols=89 Identities=30% Similarity=0.466 Sum_probs=75.8
Q ss_pred ceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCc--------eEE
Q 039945 420 GQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKND--------LAK 491 (531)
Q Consensus 420 G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~--------~v~ 491 (531)
|++++.++..++ ++.|++++.++... .++++.++++++|+|+..+.|+|..++.+ .++
T Consensus 1 G~vl~~~~~~~~-~~~~~~~i~~l~~~-------------~~~l~~~~~v~~~~Gt~~v~~ri~ll~~~~~~pg~~~~a~ 66 (97)
T cd04094 1 GDVLADPGSLLP-TRRLDVRLTVLLSA-------------PRPLKHRQRVHLHHGTSEVLARVVLLDRDELAPGEEALAQ 66 (97)
T ss_pred CCEEecCCCcCC-ceEEEEEEEEECCC-------------CccCCCCCeEEEEeccceEEEEEEeCCccccCCCCEEEEE
Confidence 788988887766 58999999988641 26899999999999999999999987543 899
Q ss_pred EEeCCeeecccCCEEEEEeccCCCceEEEEEEE
Q 039945 492 LQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQI 524 (531)
Q Consensus 492 ~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I 524 (531)
+.|++|+++++||||+||+. +.++|+|.|.|
T Consensus 67 l~l~~pl~~~~gdrfilR~~--~~~~tiggG~V 97 (97)
T cd04094 67 LRLEEPLVALRGDRFILRSY--SPLRTLGGGRV 97 (97)
T ss_pred EEECCcEeecCCCeEEEeeC--CCCeEEEeEEC
Confidence 99999999999999999962 23599999986
No 286
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.26 E-value=7.5e-11 Score=122.57 Aligned_cols=54 Identities=24% Similarity=0.233 Sum_probs=40.0
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHH-HHHHHHccCCC
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDV-VCEYIVKKIPI 310 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~-L~~~L~~~l~~ 310 (531)
+|+|+|+||+|+..... ...++.+. ....++++||+.+.++++ |++.+.+++|.
T Consensus 218 KPvI~VlNK~D~~~~~~---~l~~i~~~------~~~~vvpISA~~e~~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 218 KPMVIAANKADLPPAEE---NIERLKEE------KYYIVVPTSAEAELALRRAAKAGLIDYIPG 272 (396)
T ss_pred CCEEEEEEchhcccchH---HHHHHHhc------CCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence 68999999999764321 12223222 245799999999999999 89999988875
No 287
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=7.7e-11 Score=108.15 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=96.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
...|.++|..|+|||+|+-.|+... .++-..++. +..++||.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs--------~~~TvtSie--------------pn~a~~r~---------------- 79 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGS--------HRGTVTSIE--------------PNEATYRL---------------- 79 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCC--------ccCeeeeec--------------cceeeEee----------------
Confidence 3578999999999999998886321 122111110 11222222
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhcc---ccCceEEEEeCCCCCCCcchH---HHH-H-HHHH---cCCceEEEE
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAA---IMDGALLLIAANESCPQPQTS---EHL-A-AVEI---MRLQHIIIL 253 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~---~aD~~llVvDa~~~~~~~qt~---e~l-~-~~~~---~~~~~iIvv 253 (531)
.....+|||.|||.+........+. .+-.++||||+... ....+ |.+ . +... .+.+|++++
T Consensus 80 ------gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f--~k~vrdvaefLydil~~~~~~~~~~~vLIa 151 (238)
T KOG0090|consen 80 ------GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATF--LKNVRDVAEFLYDILLDSRVKKNKPPVLIA 151 (238)
T ss_pred ------cCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEecccc--chhhHHHHHHHHHHHHhhccccCCCCEEEE
Confidence 1246899999999887766666664 78999999998763 22233 322 1 1222 244789999
Q ss_pred EeccCCccHHHHHHHH----HHHHHHHhc------c------------------c-----CCCCCEEEecccCccchHHH
Q 039945 254 QNKVDLIQENVAINQH----EAIMKFIQG------T------------------V-----ADGAPVVPISAQLKYNIDVV 300 (531)
Q Consensus 254 iNK~Dl~~~~~~~~~~----~~i~~~l~~------~------------------~-----~~~~~ii~iSa~~g~gi~~L 300 (531)
+||.|+..+...+.+. .++...... . . ...+.|.+.|++.| +++++
T Consensus 152 CNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~ 230 (238)
T KOG0090|consen 152 CNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQW 230 (238)
T ss_pred ecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHH
Confidence 9999987432222222 222221110 0 0 12456889999998 99999
Q ss_pred HHHHHcc
Q 039945 301 CEYIVKK 307 (531)
Q Consensus 301 ~~~L~~~ 307 (531)
.+||.+.
T Consensus 231 ~~wi~~~ 237 (238)
T KOG0090|consen 231 ESWIREA 237 (238)
T ss_pred HHHHHHh
Confidence 9999864
No 288
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.24 E-value=1.7e-10 Score=109.25 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|..++|||||++++++... ..+. .-|+...+. .+.+....
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f---~~~~--~~Tig~~~~-~k~~~~~~---------------------------- 46 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQV---LGRP--SWTVGCSVD-VKHHTYKE---------------------------- 46 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC---CCCC--CcceeeeEE-EEEEEEcC----------------------------
Confidence 4799999999999999999986431 1111 112221110 00001000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--------------------
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM-------------------- 245 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~-------------------- 245 (531)
.........+.||||+|+++|.......++.+|++|+|+|.+..........++..+...
T Consensus 47 ~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~ 126 (202)
T cd04102 47 GTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFG 126 (202)
T ss_pred CCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccC
Confidence 000001257999999999998777777789999999999998752111222233222221
Q ss_pred -CCceEEEEEeccCCccHHHHHH--HHHHHHHHHhcccCCCCCEEEecccCcc
Q 039945 246 -RLQHIIILQNKVDLIQENVAIN--QHEAIMKFIQGTVADGAPVVPISAQLKY 295 (531)
Q Consensus 246 -~~~~iIvviNK~Dl~~~~~~~~--~~~~i~~~l~~~~~~~~~ii~iSa~~g~ 295 (531)
...|+|+|.||+|+.+...... ..... ..+.. ..+.+.+.+++....
T Consensus 127 ~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~-~~ia~--~~~~~~i~~~c~~~~ 176 (202)
T cd04102 127 GNQIPLLVIGTKLDQIPEKESSGNLVLTAR-GFVAE--QGNAEEINLNCTNGR 176 (202)
T ss_pred CCCceEEEEEECccchhhcccchHHHhhHh-hhHHH--hcCCceEEEecCCcc
Confidence 1247999999999975321111 11111 11111 135677888888654
No 289
>PRK13768 GTPase; Provisional
Probab=99.24 E-value=1.2e-10 Score=114.30 Aligned_cols=115 Identities=20% Similarity=0.155 Sum_probs=76.0
Q ss_pred eeEEEEecCChhhH------HHHHHHhccc--cCceEEEEeCCCCCCCcchHHHHHHHH-----HcCCceEEEEEeccCC
Q 039945 193 RHVSFVDCPGHDIL------MATMLNGAAI--MDGALLLIAANESCPQPQTSEHLAAVE-----IMRLQHIIILQNKVDL 259 (531)
Q Consensus 193 ~~i~liDtPG~~~~------~~~~~~~l~~--aD~~llVvDa~~~~~~~qt~e~l~~~~-----~~~~~~iIvviNK~Dl 259 (531)
..+.+|||||+.++ .+...+.+.. ++++++|+|+..+ ..+.+.+...++. ..+ .|+++|+||+|+
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~-~~~~d~~~~~~l~~~~~~~~~-~~~i~v~nK~D~ 174 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLA-KTPSDFVSLLLLALSVQLRLG-LPQIPVLNKADL 174 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHh-CCHHHHHHHHHHHHHHHHHcC-CCEEEEEEhHhh
Confidence 47999999996442 2233334433 8999999999765 4444433332222 345 568999999999
Q ss_pred ccHHHHHHHHHHHHH------------------------HHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 260 IQENVAINQHEAIMK------------------------FIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~------------------------~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
.+....+...+.+.. .++.. ....+++++|+++++|+++|+++|.+.++.
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~-~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEET-GLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHH-CCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 876544333332221 12221 134689999999999999999999988764
No 290
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.24 E-value=8.8e-11 Score=100.99 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+..|+|.+++|||+|+-++.... |... .-.|+-+.+ ++ .+++++|.
T Consensus 9 fkllIigDsgVGKssLl~rF~ddt---Fs~s--YitTiGvDf---ki------------------------rTv~i~G~- 55 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDT---FSGS--YITTIGVDF---KI------------------------RTVDINGD- 55 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcc---cccc--eEEEeeeeE---EE------------------------EEeecCCc-
Confidence 355789999999999998886431 1111 111221111 11 12223331
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc-CCceEEEEEeccCCccHHH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM-RLQHIIILQNKVDLIQENV 264 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~-~~~~iIvviNK~Dl~~~~~ 264 (531)
...+.||||+|.+.|...+-...+..+++++|.|.+.+.....-+.+++.++.. ..-|-|+|.||.|.++...
T Consensus 56 ------~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv 129 (198)
T KOG0079|consen 56 ------RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRV 129 (198)
T ss_pred ------EEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcccee
Confidence 268999999999999888888889999999999999874444555666555432 2234588999999875422
Q ss_pred HHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 265 AINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 265 ~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
. ..++.+.+.. ..++.+|++||+..+|++..+..|.+.+
T Consensus 130 V--~t~dAr~~A~---~mgie~FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 130 V--DTEDARAFAL---QMGIELFETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred e--ehHHHHHHHH---hcCchheehhhhhcccchHHHHHHHHHH
Confidence 1 1223333333 2467899999999999999888877554
No 291
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.23 E-value=7.9e-12 Score=107.88 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=65.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcC-ccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTV-RFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~-~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
+|+++|..++|||||+++|.+.... ........+.++....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 42 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDV-------------------------------------- 42 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEE--------------------------------------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEE--------------------------------------
Confidence 6899999999999999999965432 0000000111111000
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc----CCceEEEEEeccC
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM----RLQHIIILQNKVD 258 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~----~~~~iIvviNK~D 258 (531)
.........+.|+|++|...+.......+..+|++++|+|.++.....+..+.+..+..+ ...|+|+|.||.|
T Consensus 43 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 43 IVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 000011145899999998776654444488899999999998642111222222222222 2357999999998
No 292
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.22 E-value=1.5e-10 Score=95.64 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=69.0
Q ss_pred eEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCc---------eEEEEeCCeeecccC
Q 039945 433 FVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKND---------LAKLQLTSPVCTSRG 503 (531)
Q Consensus 433 ~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~---------~v~~~l~~p~~~~~g 503 (531)
+..|+|++.||++..+. ..++|..|+++.+|+|+.++.|+|..++.. .|+|.|.+|+|+++|
T Consensus 3 ~~~f~a~i~~L~~~~~g---------~~~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~g~~~~v~i~l~~p~~~~~g 73 (93)
T cd03706 3 HDKVEAQVYILSKAEGG---------RHKPFVSNFQPQMFSLTWDCAARIDLPPGKEMVMPGEDTKVTLILRRPMVLEKG 73 (93)
T ss_pred ceEEEEEEEEEcccccC---------CCccccCCCeeEEEeccceEEEEEECCCCCcEeCCCCEEEEEEEECCcEEEeeC
Confidence 47899999999863211 136899999999999999999999998632 789999999999999
Q ss_pred CEEEEEeccCCCceEEEEEEEee
Q 039945 504 EKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 504 ~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
+||+||+ .++|||+|+|++
T Consensus 74 ~rf~lR~----~~~tvg~G~V~~ 92 (93)
T cd03706 74 QRFTLRD----GNRTIGTGLVTD 92 (93)
T ss_pred CEEEEEE----CCEEEEEEEEEe
Confidence 9999996 779999999964
No 293
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.8e-11 Score=109.07 Aligned_cols=160 Identities=14% Similarity=0.164 Sum_probs=106.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH-CCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~-g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
+...+|.++|--+|||||++..|- |+... .--|+ ++ ..+.++
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vt-------tvPTi--Gf---------------------------nVE~v~- 57 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-------TVPTI--GF---------------------------NVETVE- 57 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCccc-------CCCcc--cc---------------------------ceeEEE-
Confidence 455899999999999999999884 32110 00011 11 111122
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHH--cCCceEEEEEeccC
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEI--MRLQHIIILQNKVD 258 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~--~~~~~iIvviNK~D 258 (531)
..+..+++||.-|+..+...........+++|||||+++.......++.+ .++.. ++..|++++.||.|
T Consensus 58 --------ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD 129 (181)
T KOG0070|consen 58 --------YKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQD 129 (181)
T ss_pred --------EcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhh
Confidence 22379999999999888888888889999999999998753333344433 22222 34567999999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+.+.-...++.+.+. +.........+-.++|.+|+|+.+-+++|.+.+.
T Consensus 130 ~~~als~~ei~~~L~--l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 130 LPGALSAAEITNKLG--LHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred ccccCCHHHHHhHhh--hhccCCCCcEEeeccccccccHHHHHHHHHHHHh
Confidence 987644333322221 1122234567888999999999999999987654
No 294
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.21 E-value=9.8e-11 Score=119.05 Aligned_cols=167 Identities=19% Similarity=0.248 Sum_probs=90.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|||+|.+|+|||||+|+|.|... |.+..-.. +.. +.+..|..|.+-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~-----~d~~aA~t--Gv~---------etT~~~~~Y~~p------------- 83 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGH-----EDEGAAPT--GVV---------ETTMEPTPYPHP------------- 83 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--T-----TSTTS--S--SSH---------SCCTS-EEEE-S-------------
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCC-----CCcCcCCC--CCC---------cCCCCCeeCCCC-------------
Confidence 4458999999999999999999987532 11111100 000 001112222210
Q ss_pred CCccccccceeeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEe
Q 039945 183 GFENCRMKLLRHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQN 255 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviN 255 (531)
....++|||.||.. +|.+.+ .+...|.+|++.+.. ........+..++.+| +++.+|-+
T Consensus 84 --------~~pnv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~r---f~~ndv~La~~i~~~g-K~fyfVRT 149 (376)
T PF05049_consen 84 --------KFPNVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSER---FTENDVQLAKEIQRMG-KKFYFVRT 149 (376)
T ss_dssp --------S-TTEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESSS-----HHHHHHHHHHHHTT--EEEEEE-
T ss_pred --------CCCCCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCCC---CchhhHHHHHHHHHcC-CcEEEEEe
Confidence 01469999999952 344433 567889877766543 3444455556777788 56999999
Q ss_pred ccCCc--cH-----------HHHHHHHHHHHHHHhcccCCCCCEEEecccCc--cchHHHHHHHHccCCCCC
Q 039945 256 KVDLI--QE-----------NVAINQHEAIMKFIQGTVADGAPVVPISAQLK--YNIDVVCEYIVKKIPIPE 312 (531)
Q Consensus 256 K~Dl~--~~-----------~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g--~gi~~L~~~L~~~l~~~~ 312 (531)
|+|.. .. .-++++.+.+.+.|+..+....++|-||+..- .++..|.+.|.+.+|..+
T Consensus 150 KvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 150 KVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp -HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred cccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 99961 11 11233444445555554456678999998864 468899999998888654
No 295
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.21 E-value=4.3e-11 Score=122.05 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=100.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+..++.++|.||+||||++|.++.... ++++-|.||+.+-.
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradv---------------------------evqpYaFTTksL~v------------ 207 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADD---------------------------EVQPYAFTTKLLLV------------ 207 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccccccc---------------------------ccCCcccccchhhh------------
Confidence 447889999999999999998875432 25677888887644
Q ss_pred CccccccceeeEEEEecCChhh-----H-HHHH--HHhc-cccCceEEEEeCCCCCCCcchHHHHHHH----HHcCCceE
Q 039945 184 FENCRMKLLRHVSFVDCPGHDI-----L-MATM--LNGA-AIMDGALLLIAANESCPQPQTSEHLAAV----EIMRLQHI 250 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~-----~-~~~~--~~~l-~~aD~~llVvDa~~~~~~~qt~e~l~~~----~~~~~~~i 250 (531)
|++.+....+..+||||.-+ . +-+| +.++ ..--++|++.|-++-| .....+.+.+. ..+..+++
T Consensus 208 --GH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~C-GySva~QvkLfhsIKpLFaNK~~ 284 (620)
T KOG1490|consen 208 --GHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMC-GYSVAAQVKLYHSIKPLFANKVT 284 (620)
T ss_pred --hhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhh-CCCHHHHHHHHHHhHHHhcCCce
Confidence 33333346899999999422 1 1112 2222 3335789999998742 11122333333 33455789
Q ss_pred EEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchH
Q 039945 251 IILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNID 298 (531)
Q Consensus 251 IvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~ 298 (531)
|+|+||+|+...+.+.+..+++.+.+.. ..+++++.+|+.+.+|+-
T Consensus 285 IlvlNK~D~m~~edL~~~~~~ll~~~~~--~~~v~v~~tS~~~eegVm 330 (620)
T KOG1490|consen 285 ILVLNKIDAMRPEDLDQKNQELLQTIID--DGNVKVVQTSCVQEEGVM 330 (620)
T ss_pred EEEeecccccCccccCHHHHHHHHHHHh--ccCceEEEecccchhcee
Confidence 9999999998776666555555555543 346899999999999984
No 296
>PTZ00258 GTP-binding protein; Provisional
Probab=99.21 E-value=1.7e-10 Score=118.61 Aligned_cols=93 Identities=20% Similarity=0.247 Sum_probs=58.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+|+|.||+|||||+|+|++.... +.+.|+||++... ..+.++
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~---------------------------v~n~pftTi~p~~-----g~v~~~ 66 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVP---------------------------AENFPFCTIDPNT-----ARVNVP 66 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCccc---------------------------ccCCCCCcccceE-----EEEecc
Confidence 45578999999999999999999876321 1222444443211 111111
Q ss_pred CCc--------cccccceeeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCC
Q 039945 183 GFE--------NCRMKLLRHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAAN 227 (531)
Q Consensus 183 g~~--------~~~~~~~~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~ 227 (531)
+.. ........++.|+||||.. ......+..++.+|++++|||+.
T Consensus 67 d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 67 DERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 000 0000001469999999942 24456677889999999999984
No 297
>PTZ00099 rab6; Provisional
Probab=99.20 E-value=5.4e-11 Score=110.41 Aligned_cols=114 Identities=18% Similarity=0.109 Sum_probs=78.1
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHHcC-CceEEEEEeccCCccHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEIMR-LQHIIILQNKVDLIQENVAINQHE 270 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~~~-~~~iIvviNK~Dl~~~~~~~~~~~ 270 (531)
..+.||||||++.|...+...++.+|++|+|+|++..........++. +....+ ..|+|+|.||+|+...... ..+
T Consensus 29 v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v--~~~ 106 (176)
T PTZ00099 29 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKV--TYE 106 (176)
T ss_pred EEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCC--CHH
Confidence 689999999999988777778899999999999986421112223333 333222 3468999999999642111 111
Q ss_pred HHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 271 AIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 271 ~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
+...+... ....++++||++|.|+++++++|.+.+|..
T Consensus 107 e~~~~~~~---~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 107 EGMQKAQE---YNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred HHHHHHHH---cCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 22222222 245789999999999999999999887653
No 298
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.16 E-value=1e-10 Score=101.66 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=99.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC-cCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ-TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~-~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
-..+++++|..-+|||||+-+..... ... .--|+..+|- ...+++.
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~k------HlsTlQASF~---------------------------~kk~n~e 58 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCK------HLSTLQASFQ---------------------------NKKVNVE 58 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchh------hHHHHHHHHh---------------------------hcccccc
Confidence 34789999999999999998876321 111 1112222221 1122333
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHHcCC-ceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEIMRL-QHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~~~~-~~iIvviNK~Dl~ 260 (531)
++ ...+.+|||+|+++|...---..+.+|.+|||+|.++.......+.+. ++-..+|. .-++||.||+|+.
T Consensus 59 d~-------ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 59 DC-------RADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred cc-------eeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 22 147899999999988654444558899999999998752222223333 33444553 2368899999996
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
.+.. -..++...+... -...++.+||+.+.||.+|++.|..
T Consensus 132 eeR~--Vt~qeAe~YAes---vGA~y~eTSAk~N~Gi~elFe~Lt~ 172 (218)
T KOG0088|consen 132 EERQ--VTRQEAEAYAES---VGALYMETSAKDNVGISELFESLTA 172 (218)
T ss_pred Hhhh--hhHHHHHHHHHh---hchhheecccccccCHHHHHHHHHH
Confidence 4322 222333333321 3457899999999999999988754
No 299
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.16 E-value=2.6e-10 Score=92.89 Aligned_cols=76 Identities=21% Similarity=0.420 Sum_probs=66.4
Q ss_pred eeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCc--------eEEEE-eCCeeeccc
Q 039945 432 VFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKND--------LAKLQ-LTSPVCTSR 502 (531)
Q Consensus 432 ~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~--------~v~~~-l~~p~~~~~ 502 (531)
+++.|+|+++||++ +.+|..|+++++|+++..+.|++..+..+ .++|. +.+|+|+++
T Consensus 2 ~~~~f~A~i~il~~--------------~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~l~~g~~~~v~i~f~~~p~~~e~ 67 (87)
T cd03708 2 ACWEFEAEILVLHH--------------PTTISPGYQATVHIGSIRQTARIVSIDKDVLRTGDRALVRFRFLYHPEYLRE 67 (87)
T ss_pred ceeEEEEEEEEEcC--------------CCcccCCCEeEEEEcCCEEEEEEEeccHhhccCCCeEEEEEEECCCCcEEcc
Confidence 36789999999986 36899999999999999999999987532 78888 479999999
Q ss_pred CCEEEEEeccCCCceEEEEEEEee
Q 039945 503 GEKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 503 g~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
+.||+|| +|+|+|+|+|++
T Consensus 68 ~grf~lr-----~g~tva~G~I~~ 86 (87)
T cd03708 68 GQRLIFR-----EGRTKGVGEVTK 86 (87)
T ss_pred CCeEEEE-----CCCcEEEEEEEE
Confidence 9999998 559999999965
No 300
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.15 E-value=9.4e-10 Score=96.38 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=77.0
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HHcCCc--e-EEEEEeccCCccHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EIMRLQ--H-IIILQNKVDLIQENVAINQ 268 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~~~~~--~-iIvviNK~Dl~~~~~~~~~ 268 (531)
.++.||||+|+++|...+....+++=.+++|.|.++.........++..+ ...+.| + +.+|..|+|+.... +-.
T Consensus 58 iklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR--qVt 135 (213)
T KOG0091|consen 58 IKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR--QVT 135 (213)
T ss_pred EEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc--ccc
Confidence 68999999999999999999999999999999998652122222222222 223312 2 35778999997532 234
Q ss_pred HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 269 HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 269 ~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
.++.+++.+. ....+|++||++|.|+++-+..|.+.
T Consensus 136 ~EEaEklAa~---hgM~FVETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 136 AEEAEKLAAS---HGMAFVETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred HHHHHHHHHh---cCceEEEecccCCCcHHHHHHHHHHH
Confidence 4555555543 45789999999999999888777643
No 301
>PLN00023 GTP-binding protein; Provisional
Probab=99.15 E-value=2.6e-10 Score=113.68 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=50.0
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--------------CceEEEEEeccC
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--------------LQHIIILQNKVD 258 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--------------~~~iIvviNK~D 258 (531)
..+.||||+|++.|.......++.+|++|+|+|.+..........++..+...+ ..++|+|.||+|
T Consensus 83 v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D 162 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD 162 (334)
T ss_pred EEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence 579999999999998777777899999999999986421112223333333321 246899999999
Q ss_pred CccH
Q 039945 259 LIQE 262 (531)
Q Consensus 259 l~~~ 262 (531)
+...
T Consensus 163 L~~~ 166 (334)
T PLN00023 163 IAPK 166 (334)
T ss_pred cccc
Confidence 9753
No 302
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.14 E-value=3.1e-10 Score=96.50 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=66.5
Q ss_pred eeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecC------------c----------e
Q 039945 432 VFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKN------------D----------L 489 (531)
Q Consensus 432 ~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~------------~----------~ 489 (531)
+.++|+|+++||+++ ..+|..|+++++|+++.+++|+|..+.. + .
T Consensus 2 ~~~~F~A~i~vl~~~-------------~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~ 68 (108)
T cd03704 2 VVTEFEAQIAILELK-------------RSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVI 68 (108)
T ss_pred cccEEEEEEEEEeCC-------------CCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEE
Confidence 357899999999873 1578999999999999999999986521 1 7
Q ss_pred EEEEeCCeeecccC------CEEEEEeccCCCceEEEEEEEee
Q 039945 490 AKLQLTSPVCTSRG------EKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 490 v~~~l~~p~~~~~g------~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
|+|.+.+|+|++++ .||+||+ .|+|+|+|.|++
T Consensus 69 v~i~~~~pi~~e~~~~~~~lGRf~lR~----~g~Tva~G~V~~ 107 (108)
T cd03704 69 ARLETTGPICLEKFEDFPQLGRFTLRD----EGKTIAIGKVLK 107 (108)
T ss_pred EEEEeCCcEEEEEcccCCCcccEEEEe----CCCEEEEEEEEE
Confidence 78889999999999 5999996 899999999964
No 303
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.14 E-value=4.1e-10 Score=92.40 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=67.4
Q ss_pred eEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCc---------eEEEEeCCeeecccC
Q 039945 433 FVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKND---------LAKLQLTSPVCTSRG 503 (531)
Q Consensus 433 ~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~---------~v~~~l~~p~~~~~g 503 (531)
+..|+|++.+|++..+. ...+|..|+++++|+|+.++.|++..+.+. .|+|.+.+|+|++++
T Consensus 3 ~~~~~a~i~~l~~~~~g---------~~~~i~~g~~~~l~~gt~~~~~~i~~l~~~~~i~~g~~~~v~l~l~~pv~~~~~ 73 (90)
T cd03707 3 HTKFEAEVYVLTKEEGG---------RHTPFFSGYRPQFYIRTTDVTGSITLPEGTEMVMPGDNVKMTVELIHPIALEKG 73 (90)
T ss_pred eeEEEEEEEEEcccccC---------CCCcccCCceeEEEeccCeEEEEEEccCcccccCCCCEEEEEEEECCcEEEecC
Confidence 57899999999753211 136899999999999999999999998632 889999999999999
Q ss_pred CEEEEEeccCCCceEEEEEEE
Q 039945 504 EKIALSRRVEKHWRLIGWGQI 524 (531)
Q Consensus 504 ~r~ilr~~~~~~~~tig~G~I 524 (531)
+||+||+ .++|||.|+|
T Consensus 74 ~rf~lR~----~~~tig~G~V 90 (90)
T cd03707 74 LRFAIRE----GGRTVGAGVI 90 (90)
T ss_pred CEEEEec----CCcEEEEEEC
Confidence 9999996 6899999986
No 304
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.12 E-value=4.4e-10 Score=113.73 Aligned_cols=180 Identities=16% Similarity=0.164 Sum_probs=102.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcC-ccc--cceecceEeeecceeeeeecccCCCCCCCc---cccccCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTV-RFK--NELERNITIKLGYANAKIYKCEDDRCPRPM---CYKAYGSGKEDN 176 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~-~~~--~e~~~git~~~~~~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~ 176 (531)
...+.|+++|++++|||||+|+|.+.... ... ++++|. .+ ...++.+| +|.+-....+
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra--~D------------ELpqs~~GktItTTePkfvP~-- 78 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERA--QD------------ELPQSAAGKTIMTTEPKFVPN-- 78 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHH--Hh------------ccCcCCCCCCcccCCCccccC--
Confidence 45589999999999999999999987221 001 111221 11 01233344 4444322101
Q ss_pred CCCCCCCCccccccceeeEEEEecCChhh-------------------------HHHH----HHHhcc-ccCceEEEE-e
Q 039945 177 PLCDVPGFENCRMKLLRHVSFVDCPGHDI-------------------------LMAT----MLNGAA-IMDGALLLI-A 225 (531)
Q Consensus 177 ~~~~~~g~~~~~~~~~~~i~liDtPG~~~-------------------------~~~~----~~~~l~-~aD~~llVv-D 225 (531)
..+++.. ......++.||||+|..+ |... +...+. .+|++|+|. |
T Consensus 79 kAvEI~~----~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTD 154 (492)
T TIGR02836 79 EAVEINI----NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTD 154 (492)
T ss_pred cceEEec----cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcC
Confidence 1111110 001125899999999421 1111 344455 899999999 8
Q ss_pred CCCCC-----CCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccC--ccchH
Q 039945 226 ANESC-----PQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQL--KYNID 298 (531)
Q Consensus 226 a~~~~-----~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~--g~gi~ 298 (531)
++-+. ......+.+..++..+ +|+|+++||+|-...+ ..+..+++.+. .++|++++|+.+ .+.|.
T Consensus 155 gsi~dI~Re~y~~aEe~~i~eLk~~~-kPfiivlN~~dp~~~e-t~~l~~~l~ek------y~vpvl~v~c~~l~~~DI~ 226 (492)
T TIGR02836 155 GTITDIPREDYVEAEERVIEELKELN-KPFIILLNSTHPYHPE-TEALRQELEEK------YDVPVLAMDVESMRESDIL 226 (492)
T ss_pred CCccccccccchHHHHHHHHHHHhcC-CCEEEEEECcCCCCch-hHHHHHHHHHH------hCCceEEEEHHHcCHHHHH
Confidence 86211 2333455667788888 5699999999943322 22333344332 247889998865 45677
Q ss_pred HHHHHHHccCCC
Q 039945 299 VVCEYIVKKIPI 310 (531)
Q Consensus 299 ~L~~~L~~~l~~ 310 (531)
.+++.+.--+|.
T Consensus 227 ~il~~vL~EFPv 238 (492)
T TIGR02836 227 SVLEEVLYEFPI 238 (492)
T ss_pred HHHHHHHhcCCc
Confidence 777766545554
No 305
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.10 E-value=2.3e-09 Score=104.77 Aligned_cols=119 Identities=15% Similarity=0.126 Sum_probs=69.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+|+|+|...... ..-.+-|..... ....+.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v--~~~~~~T~~~~~-----------------------------~~~~~~ 77 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAAT--SAFQSETLRVRE-----------------------------VSGTVD 77 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccc--CCCCCceEEEEE-----------------------------EEEEEC
Confidence 4458999999999999999999998642100 000011111110 001122
Q ss_pred CCccccccceeeEEEEecCChhhHH------HH----HHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHH-HcCC--
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILM------AT----MLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVE-IMRL-- 247 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~------~~----~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~~~-- 247 (531)
| ..+++|||||..+.. .. ..+.+ ...|++++|...+...........+..+. .+|.
T Consensus 78 g---------~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i 148 (249)
T cd01853 78 G---------FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI 148 (249)
T ss_pred C---------eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh
Confidence 2 689999999965431 11 11122 25788888876554312333344554443 3452
Q ss_pred -ceEEEEEeccCCcc
Q 039945 248 -QHIIILQNKVDLIQ 261 (531)
Q Consensus 248 -~~iIvviNK~Dl~~ 261 (531)
+++++|+||+|...
T Consensus 149 ~~~~ivV~T~~d~~~ 163 (249)
T cd01853 149 WRNAIVVLTHAASSP 163 (249)
T ss_pred HhCEEEEEeCCccCC
Confidence 46899999999864
No 306
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.10 E-value=1.4e-09 Score=109.61 Aligned_cols=108 Identities=15% Similarity=0.028 Sum_probs=65.3
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHH
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEA 271 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~ 271 (531)
...+.||||||... .....+..+|.++++.+...+ ..... +...+-.++.++|+||+|+............
T Consensus 126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~----~el~~--~~~~l~~~~~ivv~NK~Dl~~~~~~~~~~~~ 196 (300)
T TIGR00750 126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG----DDLQG--IKAGLMEIADIYVVNKADGEGATNVTIARLM 196 (300)
T ss_pred CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc----HHHHH--HHHHHhhhccEEEEEcccccchhHHHHHHHH
Confidence 47899999999642 222345678998888654322 11111 1121222457999999999865432221111
Q ss_pred H----HHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 272 I----MKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 272 i----~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+ ..+.........+++++||++|+|+++|+++|.+++
T Consensus 197 ~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 197 LALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 1 111111111235799999999999999999998653
No 307
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.2e-10 Score=99.69 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=77.3
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCCccHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
..+.||||+|+++|...+....+.|-..||++|-+.....-..+.++..++.. ..|.+|++.||+|+.+...+.+
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~-- 144 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSE-- 144 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhH--
Confidence 67999999999999888888889999999999987542233455555555432 2477999999999986543322
Q ss_pred HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHH
Q 039945 270 EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIV 305 (531)
Q Consensus 270 ~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~ 305 (531)
++..++... -..|+|++||-+|.|+++-.+.|.
T Consensus 145 ~qa~~La~k---yglPYfETSA~tg~Nv~kave~Ll 177 (219)
T KOG0081|consen 145 DQAAALADK---YGLPYFETSACTGTNVEKAVELLL 177 (219)
T ss_pred HHHHHHHHH---hCCCeeeeccccCcCHHHHHHHHH
Confidence 222222222 358999999999999976555544
No 308
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.08 E-value=5.1e-10 Score=94.46 Aligned_cols=74 Identities=9% Similarity=0.157 Sum_probs=65.1
Q ss_pred eEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecC--------------c--------eE
Q 039945 433 FVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKN--------------D--------LA 490 (531)
Q Consensus 433 ~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~--------------~--------~v 490 (531)
+.+|+|+++||++ +++|..|+++.+|+++.+++|+|..|.. . .|
T Consensus 3 ~~~f~A~v~~l~~--------------~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v 68 (104)
T cd03705 3 AESFTAQVIVLNH--------------PGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIV 68 (104)
T ss_pred ccEEEEEEEEECC--------------CCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEE
Confidence 5789999999986 3689999999999999999999997732 1 67
Q ss_pred EEEeCCeeecccC------CEEEEEeccCCCceEEEEEEE
Q 039945 491 KLQLTSPVCTSRG------EKIALSRRVEKHWRLIGWGQI 524 (531)
Q Consensus 491 ~~~l~~p~~~~~g------~r~ilr~~~~~~~~tig~G~I 524 (531)
+|.+.+|+|++++ .||+||| .+.|+|+|.|
T Consensus 69 ~l~~~~pi~~e~~~~~~~lgrf~lrd----~~~Tva~G~v 104 (104)
T cd03705 69 KIVPQKPLVVETFSEYPPLGRFAVRD----MGQTVAVGIV 104 (104)
T ss_pred EEEECCeeEEEEcccCCCccCEEEEe----CCCEEEEEEC
Confidence 8889999999998 5999997 7899999986
No 309
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.08 E-value=9.2e-10 Score=93.41 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=66.6
Q ss_pred eeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecC--------------c--------e
Q 039945 432 VFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKN--------------D--------L 489 (531)
Q Consensus 432 ~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~--------------~--------~ 489 (531)
....|+|+++|+++ ..+|..|+++.+|+++..++|+|..|.. . .
T Consensus 2 ~~~~f~A~v~~l~~--------------~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~ 67 (107)
T cd04093 2 SSTRFEARILTFNV--------------DKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAI 67 (107)
T ss_pred cccEEEEEEEEECC--------------CcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEE
Confidence 35789999999975 3689999999999999999999997641 1 6
Q ss_pred EEEEeCCeeecccC------CEEEEEeccCCCceEEEEEEEee
Q 039945 490 AKLQLTSPVCTSRG------EKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 490 v~~~l~~p~~~~~g------~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
|+|.+.+|+|++++ .||+||+ .|+|+|+|.|.+
T Consensus 68 v~l~~~~pi~~e~~~~~~~~Grfilr~----~~~Tva~G~I~~ 106 (107)
T cd04093 68 VEIELERPIPLELFKDNKELGRVVLRR----DGETIAAGLVTE 106 (107)
T ss_pred EEEEECCeEEEEEcccCCCcceEEEEc----CCCEEEEEEEEe
Confidence 78889999999998 4999985 899999999964
No 310
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.07 E-value=8.4e-10 Score=103.87 Aligned_cols=161 Identities=22% Similarity=0.265 Sum_probs=101.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
..+|+++|.+++|||+|+-.+++.. |.++.. -|+.-. |+. .+.++|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~---f~~~y~--ptied~-------------------y~k---------~~~v~~- 48 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR---FVEDYD--PTIEDS-------------------YRK---------ELTVDG- 48 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc---cccccC--CCcccc-------------------ceE---------EEEECC-
Confidence 3689999999999999999887542 111111 111111 111 111111
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HH--cCCceEEEEEeccCCcc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EI--MRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~--~~~~~iIvviNK~Dl~~ 261 (531)
....+.|+||+|.++|.......+..+|+.++|++.++.............+ +. ...-|+|+|.||+|+..
T Consensus 49 ------~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 49 ------EVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred ------EEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 1257889999998888888888889999999999998642111222222222 21 12236999999999975
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
.... ..++...+.. ...++++++||+...++++++..|...+..
T Consensus 123 ~R~V--~~eeg~~la~---~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 123 ERQV--SEEEGKALAR---SWGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cccc--CHHHHHHHHH---hcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 3111 1122222221 245779999999999999999998865543
No 311
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.8e-09 Score=92.04 Aligned_cols=151 Identities=19% Similarity=0.241 Sum_probs=99.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
....+-.|+|..++|||.|+..++...-. . .-..|+.+.+- +| .+++.
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfm---a--dcphtigvefg-----------------tr----------iievs 56 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFM---A--DCPHTIGVEFG-----------------TR----------IIEVS 56 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHh---h--cCCcccceecc-----------------ee----------EEEec
Confidence 34578899999999999999998743211 0 11112222110 01 11222
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH----HHHHHcCCce--EEEEEec
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL----AAVEIMRLQH--IIILQNK 256 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l----~~~~~~~~~~--iIvviNK 256 (531)
| ...++.+|||+|.++|..-+....+.+-.+++|.|.+... +..|+ .-++.+-.|. ++++.||
T Consensus 57 g-------qkiklqiwdtagqerfravtrsyyrgaagalmvyditrrs----tynhlsswl~dar~ltnpnt~i~lignk 125 (215)
T KOG0097|consen 57 G-------QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS----TYNHLSSWLTDARNLTNPNTVIFLIGNK 125 (215)
T ss_pred C-------cEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhh----hhhhHHHHHhhhhccCCCceEEEEecch
Confidence 2 1268999999999999988888899999999999987642 45554 2233343343 4667799
Q ss_pred cCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHH
Q 039945 257 VDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVC 301 (531)
Q Consensus 257 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~ 301 (531)
.|+.+.. ...+++..++..+ +..-++..||++|+|+++-+
T Consensus 126 adle~qr--dv~yeeak~faee---ngl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 126 ADLESQR--DVTYEEAKEFAEE---NGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred hhhhhcc--cCcHHHHHHHHhh---cCeEEEEecccccCcHHHHH
Confidence 9996532 2345555555543 45678999999999997643
No 312
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.06 E-value=4.4e-10 Score=109.14 Aligned_cols=152 Identities=20% Similarity=0.202 Sum_probs=101.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+...|+++|.+|+|||||+++|++.... ..++ ---|.+. -.....++
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~--p~dr-LFATLDp-----------------------------T~h~a~Lp 223 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALY--PNDR-LFATLDP-----------------------------TLHSAHLP 223 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcC--ccch-hheeccc-----------------------------hhhhccCC
Confidence 34467999999999999999999964321 1110 0011111 11111222
Q ss_pred CCccccccceeeEEEEecCChhh--------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce-----
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDI--------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH----- 249 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~--------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~----- 249 (531)
. ...+.|.||-|+-. -...++..+..+|++|.|+|.+.+....|....+..+..+|+++
T Consensus 224 s--------g~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~ 295 (410)
T KOG0410|consen 224 S--------GNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQ 295 (410)
T ss_pred C--------CcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHh
Confidence 1 16789999999521 12345566688999999999998865666667778889898852
Q ss_pred -EEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 250 -IIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 250 -iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+|=|-||+|...... . ....-.+++||++|+|+++|++++...+.
T Consensus 296 ~mieVdnkiD~e~~~~-e--------------~E~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 296 NMIEVDNKIDYEEDEV-E--------------EEKNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred HHHhhccccccccccC-c--------------cccCCccccccccCccHHHHHHHHHHHhh
Confidence 466778888754211 0 01122789999999999999999987654
No 313
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.06 E-value=1e-09 Score=92.17 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=65.6
Q ss_pred eEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecC------------------c--eEEE
Q 039945 433 FVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKN------------------D--LAKL 492 (531)
Q Consensus 433 ~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~------------------~--~v~~ 492 (531)
+++|+|++.++.+ .++|..|+++.+|+|+.++.|+|..+.. + .|+|
T Consensus 3 ~~~f~a~i~~l~~--------------~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~~~~~~~l~~~~~a~v~l 68 (102)
T cd01513 3 VDKFVAEIYVLDH--------------PEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEV 68 (102)
T ss_pred ccEEEEEEEEECC--------------CcccCCCCcEEEEeecCEEeEEEEeeeeecccCcccccCchhhcCCCEEEEEE
Confidence 5789999999976 3689999999999999999999999861 1 7888
Q ss_pred EeCCeeecc------cCCEEEEEeccCCCceEEEEEEE
Q 039945 493 QLTSPVCTS------RGEKIALSRRVEKHWRLIGWGQI 524 (531)
Q Consensus 493 ~l~~p~~~~------~g~r~ilr~~~~~~~~tig~G~I 524 (531)
.+.+|+|++ +++||+||+ .++|+|+|.|
T Consensus 69 ~~~~pi~~e~~~~~~~~grfilr~----~~~tvg~G~V 102 (102)
T cd01513 69 ELQKPVALETFSENQEGGRFALRD----GGRTVGAGLI 102 (102)
T ss_pred EECCceEEEEhhhCCCcccEEEEe----CCCEEEEEEC
Confidence 999999999 889999996 7799999986
No 314
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.00 E-value=1.4e-09 Score=103.79 Aligned_cols=101 Identities=14% Similarity=0.127 Sum_probs=62.0
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHH--HHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQEN--VAINQHE 270 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~--~~~~~~~ 270 (531)
..+.||+|.|.-.. ........+..+.|+|+..+. .... ......+ .+.++++||+|+.+.. ...+..+
T Consensus 103 ~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d-~~~~----~~~~~~~-~a~iiv~NK~Dl~~~~~~~~~~~~~ 173 (207)
T TIGR00073 103 IDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGD-DKPL----KYPGMFK-EADLIVINKADLAEAVGFDVEKMKA 173 (207)
T ss_pred CCEEEEecCCCcCC---CcccccccCeEEEEEecCccc-chhh----hhHhHHh-hCCEEEEEHHHccccchhhHHHHHH
Confidence 57899999992100 001112346667889987642 1111 1112223 3479999999997532 2233333
Q ss_pred HHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 271 AIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 271 ~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
.+++. ....+++++||++|.|+++|++++.++
T Consensus 174 ~l~~~-----~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 174 DAKKI-----NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHh-----CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33332 245789999999999999999999754
No 315
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.99 E-value=1.4e-09 Score=103.91 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=103.4
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
+....++++.|..|+|||+|+|.++.............|-|..+.+.
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f--------------------------------- 179 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF--------------------------------- 179 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee---------------------------------
Confidence 35568899999999999999999985432110011123333333221
Q ss_pred CCCccccccceeeEEEEecCCh----------hhHHHHHHHhc---cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 182 PGFENCRMKLLRHVSFVDCPGH----------DILMATMLNGA---AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~----------~~~~~~~~~~l---~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
.....+.++|.||. .++.+.+...+ .+-=-+.+++|++.+ +.+-+-..+.++...++|
T Consensus 180 --------~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~-i~~~D~~~i~~~ge~~VP 250 (320)
T KOG2486|consen 180 --------HVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVP-IQPTDNPEIAWLGENNVP 250 (320)
T ss_pred --------eccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCC-CCCCChHHHHHHhhcCCC
Confidence 11268999999992 23333333332 333456788999988 788888889999999976
Q ss_pred eEEEEEeccCCccHHH--H----HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHH
Q 039945 249 HIIILQNKVDLIQENV--A----INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIV 305 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~--~----~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~ 305 (531)
+.+|+||||....-. . ......+..+..+......|++.+|+.++.|+++|+-.|.
T Consensus 251 -~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 251 -MTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred -eEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehh
Confidence 889999999753211 0 1111112233333334567899999999999998876554
No 316
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.99 E-value=1.3e-09 Score=93.32 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=106.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|.++|--|+||||+++.|.+++. +-+|-.-+|.. ..++..
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~--------~hltpT~GFn~---------------------------k~v~~~ 59 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP--------RHLTPTNGFNT---------------------------KKVEYD 59 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh--------hhccccCCcce---------------------------EEEeec
Confidence 4458999999999999999999988653 33333222211 111222
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHHc--CCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEIM--RLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~~--~~~~iIvviNK~Dl 259 (531)
| ..+++++|..|.+....-......+.|.+|+|||+++.-......+++ ++++.. ..-|+.+..||-|+
T Consensus 60 g--------~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdl 131 (185)
T KOG0074|consen 60 G--------TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDL 131 (185)
T ss_pred C--------cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHH
Confidence 2 278999999998876666777788999999999977542222333333 444332 22468899999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
......++....+. +.........+-.+||.+++|+..=.+++....
T Consensus 132 ltaa~~eeia~kln--l~~lrdRswhIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 132 LTAAKVEEIALKLN--LAGLRDRSWHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred HhhcchHHHHHhcc--hhhhhhceEEeeeCccccccCccCcchhhhcCC
Confidence 86554444332221 112223456788899999999998888887543
No 317
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.98 E-value=2.6e-09 Score=100.20 Aligned_cols=86 Identities=22% Similarity=0.266 Sum_probs=56.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...-+|+++|.|.+|||||+..+++.....-..| .|. + .| .|
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~ye----FTT------L---tc------Ip------------------- 101 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYE----FTT------L---TC------IP------------------- 101 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhcee----eeE------E---Ee------ec-------------------
Confidence 4457899999999999999999997643110000 111 0 00 01
Q ss_pred CCccccccceeeEEEEecCChhh-------HHHHHHHhccccCceEEEEeCCCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDI-------LMATMLNGAAIMDGALLLIAANES 229 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~-------~~~~~~~~l~~aD~~llVvDa~~~ 229 (531)
+...+..-.|+++|.||+-. ..++.+..++.||++++|+||+..
T Consensus 102 ---Gvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 102 ---GVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred ---ceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 22222236899999999532 234566677899999999999864
No 318
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.98 E-value=1.7e-09 Score=99.25 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=42.9
Q ss_pred eeEEEEecCChhh----HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEecc
Q 039945 193 RHVSFVDCPGHDI----LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 193 ~~i~liDtPG~~~----~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~ 257 (531)
..+.|+||||..+ ....+...+..+|++|+|++++.. ......+.+..........+|+|+||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~-~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQD-LTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTST-GGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcc-cchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 5799999999532 123455566899999999999986 343444444433333445689999995
No 319
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.97 E-value=3e-09 Score=101.89 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=63.0
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch--HHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT--SEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHE 270 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt--~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~ 270 (531)
+.+.||.|-|.-. .-..-...+|.+++|+-...|. .-|. .-.++++ . |+|+||.|+...+.....++
T Consensus 122 ~D~IiiETVGvGQ---sE~~I~~~aD~~v~v~~Pg~GD-~iQ~~KaGimEia------D-i~vVNKaD~~gA~~~~~~l~ 190 (266)
T PF03308_consen 122 FDVIIIETVGVGQ---SEVDIADMADTVVLVLVPGLGD-EIQAIKAGIMEIA------D-IFVVNKADRPGADRTVRDLR 190 (266)
T ss_dssp -SEEEEEEESSST---HHHHHHTTSSEEEEEEESSTCC-CCCTB-TTHHHH-------S-EEEEE--SHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---cHHHHHHhcCeEEEEecCCCcc-HHHHHhhhhhhhc------c-EEEEeCCChHHHHHHHHHHH
Confidence 7899999999432 1223347799999999887662 3222 2222322 1 78999999765544333333
Q ss_pred HHHHHHhc-ccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 271 AIMKFIQG-TVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 271 ~i~~~l~~-~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
....+... ...+..|++.+||.+|.|+++|.++|.++
T Consensus 191 ~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 191 SMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 33333221 11234699999999999999999999864
No 320
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.95 E-value=1.7e-09 Score=106.65 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=39.9
Q ss_pred EEEEEeccCCccH--HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 250 IIILQNKVDLIQE--NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 250 iIvviNK~Dl~~~--~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
-++++||+|+... .+++...+.+++. ....+++++||++|+|+++|++||.+
T Consensus 233 DIVVLNKiDLl~~~~~dle~~~~~lr~l-----np~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 233 SLMLLNKVDLLPYLNFDVEKCIACAREV-----NPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred cEEEEEhHHcCcccHHHHHHHHHHHHhh-----CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4889999999863 2344444444443 35689999999999999999999975
No 321
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.94 E-value=7.6e-09 Score=98.47 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=72.1
Q ss_pred eeEEEEecCChh-hHH--------HHHHHhccccCceEEEEeCCCCCCCcchH--HHH---HHHHHcCCceEEEEEeccC
Q 039945 193 RHVSFVDCPGHD-ILM--------ATMLNGAAIMDGALLLIAANESCPQPQTS--EHL---AAVEIMRLQHIIILQNKVD 258 (531)
Q Consensus 193 ~~i~liDtPG~~-~~~--------~~~~~~l~~aD~~llVvDa~~~~~~~qt~--e~l---~~~~~~~~~~iIvviNK~D 258 (531)
..+.||||||+- -|. -..+. -.-+-++++|+|.... ..+-+. ..+ .++..... |+|+|.||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~la-ss~ptvv~YvvDt~rs-~~p~tFMSNMlYAcSilyktkl-p~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLA-SSFPTVVVYVVDTPRS-TSPTTFMSNMLYACSILYKTKL-PFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHh-hcCCeEEEEEecCCcC-CCchhHHHHHHHHHHHHHhccC-CeEEEEeccc
Confidence 468999999953 221 11111 1445688999998654 333332 222 23334454 5899999999
Q ss_pred CccHHHHHHHHHHH---HHHHhc------------------ccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 259 LIQENVAINQHEAI---MKFIQG------------------TVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 259 l~~~~~~~~~~~~i---~~~l~~------------------~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+.+.....++...+ ++.+.. ....+...+.+|+.+|.|+++++.++.+.+.
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 99876555444333 333321 0135678999999999999999998875543
No 322
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.94 E-value=9.6e-09 Score=98.32 Aligned_cols=159 Identities=19% Similarity=0.270 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+|+||||++|.|+|......... ....|..... ....+.|
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~-~~~~t~~~~~-----------------------------~~~~~~g-- 48 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSS-AKSVTQECQK-----------------------------YSGEVDG-- 48 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TT-TSS--SS-EE-----------------------------EEEEETT--
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccc-cCCcccccce-----------------------------eeeeecc--
Confidence 5899999999999999999999753211100 0111111100 0112222
Q ss_pred cccccceeeEEEEecCChh-------hHHHHHHH----hccccCceEEEEeCCCCCCCcchHHHHHHH-HHcCC---ceE
Q 039945 186 NCRMKLLRHVSFVDCPGHD-------ILMATMLN----GAAIMDGALLLIAANESCPQPQTSEHLAAV-EIMRL---QHI 250 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~-------~~~~~~~~----~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~~~~---~~i 250 (531)
+.+++|||||.. +....... .....|++|||+... . .....+..+..+ ..+|. +++
T Consensus 49 -------~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r-~t~~~~~~l~~l~~~FG~~~~k~~ 119 (212)
T PF04548_consen 49 -------RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-R-FTEEDREVLELLQEIFGEEIWKHT 119 (212)
T ss_dssp -------EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B--SHHHHHHHHHHHHHHCGGGGGGE
T ss_pred -------eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-c-chHHHHHHHHHHHHHccHHHHhHh
Confidence 899999999942 22233333 235689999999988 3 455556655443 34553 578
Q ss_pred EEEEeccCCccHHHHHHHH-----HHHHHHHhcccCCCCCEEEeccc------CccchHHHHHHHHccC
Q 039945 251 IILQNKVDLIQENVAINQH-----EAIMKFIQGTVADGAPVVPISAQ------LKYNIDVVCEYIVKKI 308 (531)
Q Consensus 251 IvviNK~Dl~~~~~~~~~~-----~~i~~~l~~~~~~~~~ii~iSa~------~g~gi~~L~~~L~~~l 308 (531)
||+++..|......+++.. ..+.++++.+ ...++.++.+ ....+.+|++.+.+.+
T Consensus 120 ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c---~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv 185 (212)
T PF04548_consen 120 IVVFTHADELEDDSLEDYLKKESNEALQELIEKC---GGRYHVFNNKTKDKEKDESQVSELLEKIEEMV 185 (212)
T ss_dssp EEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT---TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhccccccccHHHHHhccCchhHhHHhhhc---CCEEEEEeccccchhhhHHHHHHHHHHHHHHH
Confidence 9999999977544333222 2355555543 2356666665 2245677888777544
No 323
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.93 E-value=4.9e-08 Score=97.04 Aligned_cols=137 Identities=15% Similarity=0.265 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCcccc-------ceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKN-------ELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNP 177 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~-------e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 177 (531)
.+||.++|.+|+|||||+|.|.+........ ...+...+.. ....+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~l------------------------- 56 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEE--RTVEL------------------------- 56 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEE--EEEEE-------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceee--EEEEe-------------------------
Confidence 4799999999999999999999764321110 0111111111 11000
Q ss_pred CCCCCCCccccccceeeEEEEecCChh-------------hHHHHHHH------------hc--cccCceEEEEeCCCCC
Q 039945 178 LCDVPGFENCRMKLLRHVSFVDCPGHD-------------ILMATMLN------------GA--AIMDGALLLIAANESC 230 (531)
Q Consensus 178 ~~~~~g~~~~~~~~~~~i~liDtPG~~-------------~~~~~~~~------------~l--~~aD~~llVvDa~~~~ 230 (531)
.+ . .....++++||||+. +|+..-.. .+ ...|++|++++++...
T Consensus 57 ----~e--~---~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~ 127 (281)
T PF00735_consen 57 ----EE--N---GVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG 127 (281)
T ss_dssp ----EE--T---CEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS
T ss_pred ----cc--C---CcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc
Confidence 00 0 112689999999942 22221110 11 4568999999987533
Q ss_pred CCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcc
Q 039945 231 PQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGT 279 (531)
Q Consensus 231 ~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~ 279 (531)
+.+.+.+.+..+. ..-++|-|+.|.|....+++....+.+.+.+...
T Consensus 128 L~~~Di~~mk~Ls--~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~ 174 (281)
T PF00735_consen 128 LKPLDIEFMKRLS--KRVNVIPVIAKADTLTPEELQAFKQRIREDLEEN 174 (281)
T ss_dssp S-HHHHHHHHHHT--TTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHhc--ccccEEeEEecccccCHHHHHHHHHHHHHHHHHc
Confidence 4444444443333 2346899999999999988888888888888753
No 324
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.92 E-value=2.5e-08 Score=95.85 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=87.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccce-ecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNEL-ERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~-~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
+|.++|..++||||..+.+.+.... .|. .-+.|+++.....+ ..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p---~dT~~L~~T~~ve~~~v~-----------------------------~~--- 45 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP---RDTLRLEPTIDVEKSHVR-----------------------------FL--- 45 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G---GGGGG-----SEEEEEEE-----------------------------CT---
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc---hhccccCCcCCceEEEEe-----------------------------cC---
Confidence 5899999999999999999865421 111 11334443322110 01
Q ss_pred cccccceeeEEEEecCChhhHHHHH-----HHhccccCceEEEEeCCCCCCCcch---HHHHHHHHHcC-CceEEEEEec
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATM-----LNGAAIMDGALLLIAANESCPQPQT---SEHLAAVEIMR-LQHIIILQNK 256 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~-----~~~l~~aD~~llVvDa~~~~~~~qt---~e~l~~~~~~~-~~~iIvviNK 256 (531)
....+.+||+||+.++.... ....+.++++|+|+|+......... ...+..+...+ ..++.|++.|
T Consensus 46 -----~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK 120 (232)
T PF04670_consen 46 -----SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHK 120 (232)
T ss_dssp -----TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-
T ss_pred -----CCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEee
Confidence 12689999999987766542 3445889999999999843111111 11222233322 2358899999
Q ss_pred cCCccHHHHHHHHHHH----HHHHhcccCCCCCEEEecccCccchHHHHHHHH
Q 039945 257 VDLIQENVAINQHEAI----MKFIQGTVADGAPVVPISAQLKYNIDVVCEYIV 305 (531)
Q Consensus 257 ~Dl~~~~~~~~~~~~i----~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~ 305 (531)
||+..++...+..+.+ .+.+.........++.+|.... .+-+-+..+.
T Consensus 121 ~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~-Sly~A~S~Iv 172 (232)
T PF04670_consen 121 MDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWDE-SLYEAWSKIV 172 (232)
T ss_dssp CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTST-HHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcCc-HHHHHHHHHH
Confidence 9998766555544444 4444433333467888888873 4444444444
No 325
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.91 E-value=2.1e-08 Score=99.58 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=67.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+.++|+++|.+|+|||||+|+|+|........-...+.+... ....+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~-------------------------------~~~~~~ 84 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMM-------------------------------VSRTRA 84 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEE-------------------------------EEEEEC
Confidence 3458999999999999999999998743100000000000000 000112
Q ss_pred CCccccccceeeEEEEecCChhhH--H-HHHHHhc------cccCceEEEEeCCCCCCCcchHHHHHHHH-HcCC---ce
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDIL--M-ATMLNGA------AIMDGALLLIAANESCPQPQTSEHLAAVE-IMRL---QH 249 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~--~-~~~~~~l------~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~~~---~~ 249 (531)
| ..+++|||||..+. . ......+ ..+|++|||...+.......+...+..+. .+|. ++
T Consensus 85 G---------~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~ 155 (313)
T TIGR00991 85 G---------FTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRK 155 (313)
T ss_pred C---------eEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhcc
Confidence 2 78999999996532 1 1111111 35899999965443213333444454333 3342 56
Q ss_pred EEEEEeccCCcc
Q 039945 250 IIILQNKVDLIQ 261 (531)
Q Consensus 250 iIvviNK~Dl~~ 261 (531)
+|+++|+.|...
T Consensus 156 ~IVVfTh~d~~~ 167 (313)
T TIGR00991 156 SLVVLTHAQFSP 167 (313)
T ss_pred EEEEEECCccCC
Confidence 899999999763
No 326
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.91 E-value=9.1e-09 Score=97.30 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=63.5
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH--HHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE--NVAINQHE 270 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~--~~~~~~~~ 270 (531)
..+.+|+|.|.. ...... -..+|.++.|+|+..+. ..+ ... ...+... =++++||+|+.+. .+.+...+
T Consensus 92 ~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~-~~~-~~~---~~qi~~a-d~~~~~k~d~~~~~~~~~~~~~~ 162 (199)
T TIGR00101 92 LEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGD-KIP-RKG---GPGITRS-DLLVINKIDLAPMVGADLGVMER 162 (199)
T ss_pred CCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhh-hhh-hhh---HhHhhhc-cEEEEEhhhccccccccHHHHHH
Confidence 578899999931 000000 12268899999998762 211 111 1111111 2789999999853 22333333
Q ss_pred HHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 271 AIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 271 ~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+++.+ ....+++++||++|+|+++|+++|.++.
T Consensus 163 ~~~~~-----~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 163 DAKKM-----RGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHh-----CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44433 2468999999999999999999998654
No 327
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.90 E-value=1.2e-09 Score=97.01 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=102.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH-CCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~-g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
.++++|+|.-++||||++.+.+ |..+..+ .-||.+.+.. |. +.+.
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdy------kktIgvdfle-----------------rq----------i~v~- 65 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDY------KKTIGVDFLE-----------------RQ----------IKVL- 65 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhcccccccc------ccccchhhhh-----------------HH----------HHhh-
Confidence 3889999999999999999998 4332211 1122221110 00 1111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHHcCCceEEEEEeccCCccH
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEIMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~~~~~~iIvviNK~Dl~~~ 262 (531)
.+...+.+|||+|.++|-..+....+.|...+||++.++......+.++. ......+--|.++|-||+|+++.
T Consensus 66 ------~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 66 ------IEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED 139 (246)
T ss_pred ------HHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh
Confidence 11257889999999999888888889999999999987642222233333 23333444568999999999876
Q ss_pred HHHHH-HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 263 NVAIN-QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 263 ~~~~~-~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
..... ..+.+.+.+ ...++.+|++...|+...+.+|.+.+
T Consensus 140 s~~~~~evE~lak~l------~~RlyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 140 SQMDKGEVEGLAKKL------HKRLYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred hhcchHHHHHHHHHh------hhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 54332 222233332 35678899999999988888876543
No 328
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=98.90 E-value=8.5e-09 Score=86.80 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=65.0
Q ss_pred eeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCc--------------------eEE
Q 039945 432 VFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKND--------------------LAK 491 (531)
Q Consensus 432 ~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~--------------------~v~ 491 (531)
+..+|.|+++||++ .||..|+.+.+|+++.++.|+|..|... .|+
T Consensus 2 ~~~~f~a~i~~l~~---------------~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~~~~~~l~~n~~a~v~ 66 (103)
T cd04095 2 VSDQFAATLVWMDE---------------EPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEHEAADTLELNDIGRVE 66 (103)
T ss_pred ccceeeEEEEEecC---------------cccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCccCCCEECCCCeEEEE
Confidence 35789999999973 5899999999999999999999988431 788
Q ss_pred EEeCCeeecccCC------EEEEEeccCCCceEEEEEEE
Q 039945 492 LQLTSPVCTSRGE------KIALSRRVEKHWRLIGWGQI 524 (531)
Q Consensus 492 ~~l~~p~~~~~g~------r~ilr~~~~~~~~tig~G~I 524 (531)
|.+.+|+|++++. ||+|+|+ ..+.|+|+|.|
T Consensus 67 i~~~~pi~~d~~~~~~~~GrfiliD~--~~~~tva~G~i 103 (103)
T cd04095 67 LSLSKPLAFDPYRENRATGSFILIDR--LTNATVGAGMI 103 (103)
T ss_pred EEeCCccEecchhhCCCcceEEEEEC--CCCcEEEEEeC
Confidence 8899999999874 9999764 46799999986
No 329
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=2e-08 Score=85.93 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=102.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|..+|-.++||||++-.|.-...+ ..+..++|. + +++.+
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~--------~~ipTvGFn-v--------------------------etVty--- 58 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSV--------TTIPTVGFN-V--------------------------ETVTY--- 58 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCc--------cccccccee-E--------------------------EEEEe---
Confidence 478999999999999999998532110 011111211 0 11111
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHH--HHcCCceEEEEEeccCCcc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAV--EIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~--~~~~~~~iIvviNK~Dl~~ 261 (531)
.+..++.+|..|..+..+-.........++|||+|+.........++.+ .++ +.+..-+++|..||-|+++
T Consensus 59 ------kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~ 132 (180)
T KOG0071|consen 59 ------KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD 132 (180)
T ss_pred ------eeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc
Confidence 1278999999999888788888888999999999987542222223222 121 1122345788999999987
Q ss_pred HHHHHHHHHHHHHHHh--cccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 262 ENVAINQHEAIMKFIQ--GTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~--~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+... ++|.+++. .......-+.|.||.+|+|+.+=+.+|...+.
T Consensus 133 A~~p----qei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 133 AMKP----QEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred ccCH----HHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence 6433 34444443 12234566899999999999999999886553
No 330
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.85 E-value=5.4e-09 Score=101.49 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=58.4
Q ss_pred eeEEEEecCChhh------HHHHHHHhccc--cCceEEEEeCCCCCCCcchH-HH-H---HHHHHcCCceEEEEEeccCC
Q 039945 193 RHVSFVDCPGHDI------LMATMLNGAAI--MDGALLLIAANESCPQPQTS-EH-L---AAVEIMRLQHIIILQNKVDL 259 (531)
Q Consensus 193 ~~i~liDtPG~~~------~~~~~~~~l~~--aD~~llVvDa~~~~~~~qt~-e~-l---~~~~~~~~~~iIvviNK~Dl 259 (531)
..+.|+||||+-+ ........+.. .=++++++|+..- ..+... .. + .....++.| .|.|+||+|+
T Consensus 91 ~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~-~~~~~f~s~~L~s~s~~~~~~lP-~vnvlsK~Dl 168 (238)
T PF03029_consen 91 DDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFC-SDPSKFVSSLLLSLSIMLRLELP-HVNVLSKIDL 168 (238)
T ss_dssp -SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG--SSHHHHHHHHHHHHHHHHHHTSE-EEEEE--GGG
T ss_pred CcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccc-cChhhHHHHHHHHHHHHhhCCCC-EEEeeeccCc
Confidence 3799999999543 34445555543 3478889998743 222221 11 1 122335654 7999999999
Q ss_pred ccHH--HH------------------HHHHHHHHHHHhcccCCCC-CEEEecccCccchHHHHHHHHcc
Q 039945 260 IQEN--VA------------------INQHEAIMKFIQGTVADGA-PVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 260 ~~~~--~~------------------~~~~~~i~~~l~~~~~~~~-~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
.+.. .. ....+++.+.+..+ ... +++|+|+.+++|+++|+..+.+.
T Consensus 169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~--~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDF--GLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCC--SSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhc--CCCceEEEEECCChHHHHHHHHHHHHH
Confidence 8732 11 11112233333332 234 89999999999999999998753
No 331
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.85 E-value=3.3e-08 Score=79.81 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=66.5
Q ss_pred EEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCc
Q 039945 321 MIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGG 400 (531)
Q Consensus 321 ~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~ 400 (531)
..|.++|.+.+ .|+++.|+|.+|.|++|+.+.++|++. .. ...+|++|+++++++++|.+|+
T Consensus 3 ~~V~~vf~~~~--------~g~vag~kV~~G~l~~g~~v~vlr~~~-------~~---~~g~i~sl~~~~~~v~~a~~G~ 64 (84)
T cd03692 3 AEVRAVFKISK--------VGNIAGCYVTDGKIKRNAKVRVLRNGE-------VI---YEGKISSLKRFKDDVKEVKKGY 64 (84)
T ss_pred EEEEEEEECCC--------CcEEEEEEEEECEEeCCCEEEEEcCCC-------EE---EEEEEEEEEEcCcccCEECCCC
Confidence 45677786543 588999999999999999999999741 10 3579999999999999999999
Q ss_pred eEEEeeecCccccccccccceee
Q 039945 401 LIGVGTTMDPTLTRADRLVGQVL 423 (531)
Q Consensus 401 ~v~i~l~~~~~~~~~~i~~G~vl 423 (531)
.|++.|+ +++ ++.+|+++
T Consensus 65 ecgi~l~---~~~--d~~~Gdvi 82 (84)
T cd03692 65 ECGITLE---NFN--DIKVGDII 82 (84)
T ss_pred EEEEEEe---Ccc--cCCCCCEE
Confidence 9999987 555 88889887
No 332
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.84 E-value=2.8e-08 Score=96.12 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=47.9
Q ss_pred eeEEEEecCChh--------h----HHH-HHHHhcc-ccCceEEEEeCCCCCCCcch-HHHHHHHHHcCCceEEEEEecc
Q 039945 193 RHVSFVDCPGHD--------I----LMA-TMLNGAA-IMDGALLLIAANESCPQPQT-SEHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 193 ~~i~liDtPG~~--------~----~~~-~~~~~l~-~aD~~llVvDa~~~~~~~qt-~e~l~~~~~~~~~~iIvviNK~ 257 (531)
..++|+||||.. . .+. .+..++. ..+++|+|+|++.+ ...+. .+....+...+ +++|+|+||+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d-~~~~d~l~ia~~ld~~~-~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVD-LANSDALKLAKEVDPQG-ERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCC-CCchhHHHHHHHHHHcC-CcEEEEEECC
Confidence 689999999963 1 122 2344555 45699999999876 55554 45556666666 5689999999
Q ss_pred CCccH
Q 039945 258 DLIQE 262 (531)
Q Consensus 258 Dl~~~ 262 (531)
|..++
T Consensus 203 D~~~~ 207 (240)
T smart00053 203 DLMDE 207 (240)
T ss_pred CCCCc
Confidence 99864
No 333
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.83 E-value=1.9e-09 Score=91.12 Aligned_cols=110 Identities=19% Similarity=0.256 Sum_probs=77.0
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC--ceEEEEEeccCCccHHHHH-HHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL--QHIIILQNKVDLIQENVAI-NQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~--~~iIvviNK~Dl~~~~~~~-~~~ 269 (531)
.++++|||+|+++|..-+....+.+|..+++.|.........-+.++..+...+. -.+.++.||+|+..+.... +.-
T Consensus 47 vklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg 126 (192)
T KOG0083|consen 47 VKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDG 126 (192)
T ss_pred EEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchH
Confidence 6899999999999998888899999999999998765333344445544444432 2357889999996432111 112
Q ss_pred HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 270 EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 270 ~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.+.+. -..|++.+||++|-|++.-+-.|.+.+
T Consensus 127 ~kla~~------y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 127 EKLAEA------YGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred HHHHHH------HCCCceeccccccccHhHHHHHHHHHH
Confidence 222222 258999999999999997776665443
No 334
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.80 E-value=1.6e-08 Score=92.44 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=61.6
Q ss_pred eeEEEEecCChhhHHHHHHHhccccC-ceEEEEeCCCCCCCcchHHHHHHHHHcCCc----eEEEEEeccCCccHHHH--
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMD-GALLLIAANESCPQPQTSEHLAAVEIMRLQ----HIIILQNKVDLIQENVA-- 265 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD-~~llVvDa~~~~~~~qt~e~l~~~~~~~~~----~iIvviNK~Dl~~~~~~-- 265 (531)
..+.||.+.|. .... ......| +-|+|+|..+|...+. -+.| .=++|+||.|++..-..
T Consensus 97 ~Dll~iEs~GN--L~~~--~sp~L~d~~~v~VidvteGe~~P~----------K~gP~i~~aDllVInK~DLa~~v~~dl 162 (202)
T COG0378 97 LDLLFIESVGN--LVCP--FSPDLGDHLRVVVIDVTEGEDIPR----------KGGPGIFKADLLVINKTDLAPYVGADL 162 (202)
T ss_pred CCEEEEecCcc--eecc--cCcchhhceEEEEEECCCCCCCcc----------cCCCceeEeeEEEEehHHhHHHhCccH
Confidence 36788888881 1111 1112345 7899999998732221 1112 12789999999864322
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 266 INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 266 ~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
+...+..++. ....||+++|+++|+|++++++|+...
T Consensus 163 evm~~da~~~-----np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 163 EVMARDAKEV-----NPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred HHHHHHHHHh-----CCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 3333334333 467899999999999999999998743
No 335
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.4e-08 Score=87.30 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=77.6
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch-HHHHHHHH--HcCCceEEEEEeccCCccHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT-SEHLAAVE--IMRLQHIIILQNKVDLIQENVAINQH 269 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~~--~~~~~~iIvviNK~Dl~~~~~~~~~~ 269 (531)
-++.++|.-|.....+-........|.+|+|||.++.+...-. .+...++. .+....++++.||+|........+..
T Consensus 62 Lk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~ 141 (182)
T KOG0072|consen 62 LKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVL 141 (182)
T ss_pred ccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHH
Confidence 6899999999877666677778899999999999864322212 22222222 23335588999999987653333332
Q ss_pred HHHH-HHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 270 EAIM-KFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 270 ~~i~-~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
..+. ..|+ ...+.+|..||.+|+|++..++||.+.+.
T Consensus 142 ~~L~l~~Lk---~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 142 KMLGLQKLK---DRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred HHhChHHHh---hheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 2221 1122 23478999999999999999999986543
No 336
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.75 E-value=1.5e-08 Score=99.93 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=28.2
Q ss_pred eeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCCC
Q 039945 193 RHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAANE 228 (531)
Q Consensus 193 ~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~~ 228 (531)
..+.|+|+||.. ......+..++.+|++++|||+..
T Consensus 62 ~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 62 ATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred eEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 369999999942 344566777899999999999853
No 337
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.74 E-value=1.2e-07 Score=92.12 Aligned_cols=108 Identities=20% Similarity=0.180 Sum_probs=65.0
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAI 272 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i 272 (531)
+.+.||.|-|.-.- -..-...+|.+++|.=+..|. .-|... .-+++ +-. |+|+||.|+.+.+.....+...
T Consensus 144 ~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD-~~Q~iK-~GimE---iaD-i~vINKaD~~~A~~a~r~l~~a 214 (323)
T COG1703 144 YDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGD-DLQGIK-AGIME---IAD-IIVINKADRKGAEKAARELRSA 214 (323)
T ss_pred CCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCc-HHHHHH-hhhhh---hhh-eeeEeccChhhHHHHHHHHHHH
Confidence 67888888884321 122335689888887765552 222110 01111 111 7899999976554333333322
Q ss_pred HHHHh---cccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 273 MKFIQ---GTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 273 ~~~l~---~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
..++. ....+..|++.+||.+|+|+++|++++.++..
T Consensus 215 l~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 215 LDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 22221 12345679999999999999999999987653
No 338
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.73 E-value=2.3e-08 Score=101.83 Aligned_cols=90 Identities=20% Similarity=0.261 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.||+|||||+|+|++.... +.+.|+||++... ..+.+.+..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~---------------------------v~nypftTi~p~~-----G~~~v~d~r 50 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAE---------------------------AANYPFCTIEPNV-----GVVPVPDPR 50 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCe---------------------------ecccccccccceE-----EEEEecccc
Confidence 68999999999999999999986421 0111333332110 000000000
Q ss_pred --------cccccceeeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCC
Q 039945 186 --------NCRMKLLRHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAAN 227 (531)
Q Consensus 186 --------~~~~~~~~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~ 227 (531)
.........+.|+|+||.. ......+..++.||++++|||+.
T Consensus 51 ~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 51 LDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred chhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 0000001369999999942 24456777889999999999995
No 339
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.73 E-value=7.9e-08 Score=87.26 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=63.1
Q ss_pred HHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEec
Q 039945 211 LNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPIS 290 (531)
Q Consensus 211 ~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iS 290 (531)
...+..+|++|+|+|++.+ ...+..+....+...+ +|+++|+||+|+.+...... ...+.. ....+++++|
T Consensus 7 ~~i~~~aD~vl~V~D~~~~-~~~~~~~l~~~~~~~~-~p~iiv~NK~Dl~~~~~~~~----~~~~~~---~~~~~~~~iS 77 (156)
T cd01859 7 RRIIKESDVVLEVLDARDP-ELTRSRKLERYVLELG-KKLLIVLNKADLVPKEVLEK----WKSIKE---SEGIPVVYVS 77 (156)
T ss_pred HHHHhhCCEEEEEeeCCCC-cccCCHHHHHHHHhCC-CcEEEEEEhHHhCCHHHHHH----HHHHHH---hCCCcEEEEE
Confidence 3344669999999999876 4445555545555455 56899999999975432221 111211 1246899999
Q ss_pred ccCccchHHHHHHHHccCC
Q 039945 291 AQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 291 a~~g~gi~~L~~~L~~~l~ 309 (531)
|++|.|+++|++.|.+.+|
T Consensus 78 a~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 78 AKERLGTKILRRTIKELAK 96 (156)
T ss_pred ccccccHHHHHHHHHHHHh
Confidence 9999999999999998776
No 340
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.72 E-value=5.5e-08 Score=89.83 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=69.2
Q ss_pred cCChh-hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhc
Q 039945 200 CPGHD-ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQG 278 (531)
Q Consensus 200 tPG~~-~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~ 278 (531)
-|||- +.+.++...+..+|++++|+|++.+ ......+.+. .+..++.++|+||+|+.+...... ..++++.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~-~~~~~~~i~~---~~~~k~~ilVlNK~Dl~~~~~~~~----~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIP-LSSRNPLLEK---ILGNKPRIIVLNKADLADPKKTKK----WLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCc-cCcCChhhHh---HhcCCCEEEEEehhhcCChHHHHH----HHHHHHh
Confidence 37874 5677888889999999999999876 3333333322 333356899999999976533222 1122221
Q ss_pred ccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 279 TVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 279 ~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
...+++++||+++.|+++|.+.|...++
T Consensus 74 ---~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 ---KGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 2356899999999999999999987664
No 341
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.7e-07 Score=94.19 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=29.6
Q ss_pred eeEEEEecCCh-------hhHHHHHHHhccccCceEEEEeCCC
Q 039945 193 RHVSFVDCPGH-------DILMATMLNGAAIMDGALLLIAANE 228 (531)
Q Consensus 193 ~~i~liDtPG~-------~~~~~~~~~~l~~aD~~llVvDa~~ 228 (531)
..+.|+|.+|. +-.....+..++.+|+++.|||+..
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 57999999994 2355667888899999999999973
No 342
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=9.7e-08 Score=84.31 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=78.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+.-++.++|--|+|||||++.|=....+ +.. | +-++..+...+.|
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-----------qhv-----------------P-------TlHPTSE~l~Ig~ 63 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-----------QHV-----------------P-------TLHPTSEELSIGG 63 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc-----------ccC-----------------C-------CcCCChHHheecC
Confidence 3457899999999999999988432111 000 0 1112233344444
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHH---HHHcCCceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAA---VEIMRLQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~---~~~~~~~~iIvviNK~Dl~ 260 (531)
..++-+|.-||..-..-....+..+|.++++|||.+.......+++++. .+.+.--|+++..||+|.+
T Consensus 64 ---------m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p 134 (193)
T KOG0077|consen 64 ---------MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIP 134 (193)
T ss_pred ---------ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCC
Confidence 7899999999987666677778899999999999865344455555533 2333445689999999998
Q ss_pred cHH
Q 039945 261 QEN 263 (531)
Q Consensus 261 ~~~ 263 (531)
.+.
T Consensus 135 ~a~ 137 (193)
T KOG0077|consen 135 YAA 137 (193)
T ss_pred Ccc
Confidence 654
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.66 E-value=8.1e-08 Score=87.35 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=63.7
Q ss_pred HHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC-CceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEE
Q 039945 210 MLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR-LQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVP 288 (531)
Q Consensus 210 ~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~-~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~ 288 (531)
.++++..+|++++|+|++.+ ...........+.... .+|+|+|+||+|+.+.+......+.+.+. ....+++
T Consensus 2 ~~~~l~~aD~il~VvD~~~p-~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~------~~~~~~~ 74 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDP-MGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKE------YPTIAFH 74 (157)
T ss_pred hhHhhhhCCEEEEEEECCCC-ccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcC------CcEEEEE
Confidence 35678899999999999876 4445555555555432 25689999999998654433323332221 1122688
Q ss_pred ecccCccchHHHHHHHHccC
Q 039945 289 ISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 289 iSa~~g~gi~~L~~~L~~~l 308 (531)
+||+++.|+++|+++|.+.+
T Consensus 75 iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 75 ASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eeccccccHHHHHHHHHHHH
Confidence 99999999999999997643
No 344
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.64 E-value=2.1e-07 Score=99.71 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=67.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|.+|+|||||+|+|+|..... +. ...+.|++.. .....+.|
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~----------vs---------------s~~~~TTr~~------ei~~~idG 165 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFS----------TD---------------AFGMGTTSVQ------EIEGLVQG 165 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcccccc----------cc---------------CCCCCceEEE------EEEEEECC
Confidence 34789999999999999999999864210 00 0012222210 00011122
Q ss_pred CccccccceeeEEEEecCChhhH------HHH----HHHhc--cccCceEEEEeCCCCCCCcchHHHHHHH-HHcC---C
Q 039945 184 FENCRMKLLRHVSFVDCPGHDIL------MAT----MLNGA--AIMDGALLLIAANESCPQPQTSEHLAAV-EIMR---L 247 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~------~~~----~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~~~---~ 247 (531)
..+.+|||||..+. ... ....+ ..+|++|+|+..+......+....+..+ +.+| .
T Consensus 166 ---------~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw 236 (763)
T TIGR00993 166 ---------VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW 236 (763)
T ss_pred ---------ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH
Confidence 68999999996431 112 22232 3479988888654321111222334333 3344 2
Q ss_pred ceEEEEEeccCCcc
Q 039945 248 QHIIILQNKVDLIQ 261 (531)
Q Consensus 248 ~~iIvviNK~Dl~~ 261 (531)
+++|||+|..|...
T Consensus 237 k~tIVVFThgD~lp 250 (763)
T TIGR00993 237 FNAIVTLTHAASAP 250 (763)
T ss_pred cCEEEEEeCCccCC
Confidence 57899999999874
No 345
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.64 E-value=1.4e-07 Score=93.98 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=70.1
Q ss_pred CChh-hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcc
Q 039945 201 PGHD-ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGT 279 (531)
Q Consensus 201 PG~~-~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~ 279 (531)
|||- ...+++...+..+|++|+|+|+..+ ...........+ ..+|+|+|+||+|+.+........+.+ +.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p-~~~~~~~i~~~l---~~kp~IiVlNK~DL~~~~~~~~~~~~~----~~- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIP-LSSRNPMIDEIR---GNKPRLIVLNKADLADPAVTKQWLKYF----EE- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCC-CCCCChhHHHHH---CCCCEEEEEEccccCCHHHHHHHHHHH----HH-
Confidence 8874 4567778888999999999999875 343333333333 346799999999997654332222222 21
Q ss_pred cCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 280 VADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 280 ~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
...+++++||+++.|+++|++.|.+.++.
T Consensus 76 --~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 --KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred --cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 13578999999999999999999876653
No 346
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.63 E-value=4.6e-08 Score=90.55 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=95.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC-C
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP-G 183 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-g 183 (531)
.++++++|...+|||.|+-.++.. .|.++.- -|+ +..| ...+.++ |
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~---~fp~~yv--PTV----------------------Fdny------s~~v~V~dg 50 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN---AFPEEYV--PTV----------------------FDNY------SANVTVDDG 50 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC---cCccccc--CeE----------------------Eccc------eEEEEecCC
Confidence 478999999999999999877632 1121110 011 0000 1112221 2
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCc--chHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQP--QTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~--qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
....+.||||+|.++|-+-......++|++|++++........ .++++-++......-|+|+|.+|.||.+
T Consensus 51 -------~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 51 -------KPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD 123 (198)
T ss_pred -------CEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh
Confidence 1257899999999999663334668899999989876542111 1122223333333456999999999984
Q ss_pred HHHH-HHH---------HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 262 ENVA-INQ---------HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 262 ~~~~-~~~---------~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
.... ++. .++..++.+. .....++++||++..|+.+.++.-..
T Consensus 124 d~~~~~~l~~~~~~~Vt~~~g~~lA~~--iga~~y~EcSa~tq~~v~~vF~~a~~ 176 (198)
T KOG0393|consen 124 DPSTLEKLQRQGLEPVTYEQGLELAKE--IGAVKYLECSALTQKGVKEVFDEAIR 176 (198)
T ss_pred CHHHHHHHHhccCCcccHHHHHHHHHH--hCcceeeeehhhhhCCcHHHHHHHHH
Confidence 3211 111 1111222221 23478999999999999988876543
No 347
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.63 E-value=6e-08 Score=91.62 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
-+++++|.|.+|||||+.-|+|..+..-.-|...-+|+ || ...+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~v-------------------pG-------------~~~y~g-- 105 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTV-------------------PG-------------VIRYKG-- 105 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEe-------------------cc-------------eEeccc--
Confidence 38999999999999999999987532101010000000 11 111222
Q ss_pred cccccceeeEEEEecCChhh-------HHHHHHHhccccCceEEEEeCCCC
Q 039945 186 NCRMKLLRHVSFVDCPGHDI-------LMATMLNGAAIMDGALLLIAANES 229 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~-------~~~~~~~~l~~aD~~llVvDa~~~ 229 (531)
-.+.|.|.||.-+ ..++.+..++.|+++++|+|+..+
T Consensus 106 -------aKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 106 -------AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred -------cceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCc
Confidence 6899999999632 345567777999999999999754
No 348
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.59 E-value=2.3e-07 Score=87.10 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=65.3
Q ss_pred CChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHH-H-HHhc
Q 039945 201 PGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIM-K-FIQG 278 (531)
Q Consensus 201 PG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~-~-~l~~ 278 (531)
|.+..|.......+..+|++++|+|+++. ......+. .....+ +|+++|+||+|+..........+.+. . ..+.
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~-~~~~~~~l--~~~~~~-~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDF-PGSLIPRL--RLFGGN-NPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAG 94 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccC-CCccchhH--HHhcCC-CcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhh
Confidence 33444566666677999999999999864 22222222 112223 67899999999975322111122221 0 1111
Q ss_pred ccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 279 TVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 279 ~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
......+++++||++|+|+++|+++|.+.++
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 1122346999999999999999999998775
No 349
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.58 E-value=2.4e-07 Score=72.87 Aligned_cols=73 Identities=27% Similarity=0.285 Sum_probs=59.1
Q ss_pred ceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccc-ccc
Q 039945 341 GGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRAD-RLV 419 (531)
Q Consensus 341 G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~-i~~ 419 (531)
|++++|+|++|+|++||+|.++| +.+. .+ +...+|++|+.++....++.+|+.+++.+. ....++ +.+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~-~~~~---~~----~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~---~~~~~~~i~~ 69 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLP-NGTG---KK----GQVVKIKSIFMFNGDVQEAVAGANAGDIVA---IIGLNDAIRR 69 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEES-TTTT---EE----CEEEEEEEEEETTEEESEEETTEEEEEEEE---SSSGCSCSST
T ss_pred CEEEEEEEEEeEEcCCCEEEECc-cCCc---ce----eeeeecccccccccCccEeCCceeeEEEEE---EcCCCCCcCc
Confidence 68999999999999999999988 3110 00 135899999999999999999999999887 445556 799
Q ss_pred ceeec
Q 039945 420 GQVLG 424 (531)
Q Consensus 420 G~vl~ 424 (531)
|++||
T Consensus 70 Gdtl~ 74 (74)
T PF03144_consen 70 GDTLT 74 (74)
T ss_dssp TEEEE
T ss_pred CCEEC
Confidence 99885
No 350
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.58 E-value=2e-06 Score=85.96 Aligned_cols=144 Identities=17% Similarity=0.281 Sum_probs=90.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCcc------ccc-eecceEeeecceeeeeecccCCCCCCCccccccCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRF------KNE-LERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKED 175 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~------~~e-~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 175 (531)
.-.++|.++|..|.||||++|.|++...... ..+ ....+.+... ..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~--~~------------------------- 73 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKIT--KA------------------------- 73 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEee--ee-------------------------
Confidence 4458999999999999999999997632211 110 1112222111 11
Q ss_pred CCCCCCCCCccccccceeeEEEEecCChhh-------------HHHHHHH--------hc-------cccCceEEEEeCC
Q 039945 176 NPLCDVPGFENCRMKLLRHVSFVDCPGHDI-------------LMATMLN--------GA-------AIMDGALLLIAAN 227 (531)
Q Consensus 176 ~~~~~~~g~~~~~~~~~~~i~liDtPG~~~-------------~~~~~~~--------~l-------~~aD~~llVvDa~ 227 (531)
.+.+ . .....+++|||||.-+ |+..... .- ...+++|+.+-.+
T Consensus 74 ----~l~e--~---~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt 144 (373)
T COG5019 74 ----ELEE--D---GFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT 144 (373)
T ss_pred ----eeec--C---CeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC
Confidence 1110 0 1126899999999432 2222111 11 3468999999987
Q ss_pred CCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEE
Q 039945 228 ESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVV 287 (531)
Q Consensus 228 ~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii 287 (531)
..++.+.+.+.+.-+. ....+|-|+-|.|....+++....+.+.+.+.. .+++++
T Consensus 145 gh~l~~~DIe~Mk~ls--~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~---~nI~vf 199 (373)
T COG5019 145 GHGLKPLDIEAMKRLS--KRVNLIPVIAKADTLTDDELAEFKERIREDLEQ---YNIPVF 199 (373)
T ss_pred CCCCCHHHHHHHHHHh--cccCeeeeeeccccCCHHHHHHHHHHHHHHHHH---hCCcee
Confidence 6546666666554443 234578899999999999888888888888774 355665
No 351
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.54 E-value=1.9e-06 Score=75.10 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=99.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH-CCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~-g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..+|+++|.-++|||.++..|+ |...... +---|+.--| -. .++-+.
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~----e~~pTiEDiY-------------------~~---------svet~r 56 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGT----ELHPTIEDIY-------------------VA---------SVETDR 56 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCC----ccccchhhhe-------------------eE---------eeecCC
Confidence 4789999999999999999987 4322111 1111111111 00 000000
Q ss_pred CccccccceeeEEEEecCChhhHHHH-HHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHHcCC---ceEEEEEeccC
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMAT-MLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEIMRL---QHIIILQNKVD 258 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~-~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~~~~---~~iIvviNK~D 258 (531)
+ ..-.+.|.||+|..++-.+ -...++.+|+.+||.|..+. ..-|-.+.+ ..+..... -|++|..||+|
T Consensus 57 --g----arE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~-eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rd 129 (198)
T KOG3883|consen 57 --G----AREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDP-ESFQRVELLKKEIDKHKDKKEVPIVVLANKRD 129 (198)
T ss_pred --C----hhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCH-HHHHHHHHHHHHHhhccccccccEEEEechhh
Confidence 1 0147899999998877333 34456889999999998764 222333333 22322222 36889999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCC
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPER 313 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~ 313 (531)
+..+.+.......+ ..+ ...+..+.++|.....+-+-+.+|...+..|..
T Consensus 130 r~~p~~vd~d~A~~--Wa~---rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 130 RAEPREVDMDVAQI--WAK---REKVKLWEVTAMDRPSLYEPFTYLASRLHQPQS 179 (198)
T ss_pred cccchhcCHHHHHH--HHh---hhheeEEEEEeccchhhhhHHHHHHHhccCCcc
Confidence 97554332222211 111 245678999999999998989888877766653
No 352
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.54 E-value=8.4e-07 Score=70.26 Aligned_cols=82 Identities=29% Similarity=0.418 Sum_probs=64.8
Q ss_pred CEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEec
Q 039945 319 PNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVP 398 (531)
Q Consensus 319 ~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~a 398 (531)
++++|.++|... ..|.+++|+|.+|+|++||.+.+.|.. + ....+|.+|+..+.+++.+.|
T Consensus 1 ~~~~v~~~~~~~--------~~g~v~~~rv~~G~l~~g~~v~~~~~~------~-----~~~~~i~~i~~~~~~~~~~~a 61 (83)
T cd01342 1 LRALVFKVFKDK--------GRGTVATGRVESGTLKKGDKVRVGPGG------G-----GVKGKVKSLKRFKGEVDEAVA 61 (83)
T ss_pred CeeEEEEEEEeC--------CceEEEEEEEeeCEEecCCEEEEecCC------c-----eeEEEEeEeEecCceeceecC
Confidence 467788887643 378999999999999999999999831 0 035789999999999999999
Q ss_pred CceEEEeeecCccccccccccceeec
Q 039945 399 GGLIGVGTTMDPTLTRADRLVGQVLG 424 (531)
Q Consensus 399 G~~v~i~l~~~~~~~~~~i~~G~vl~ 424 (531)
|+.+++.+. .. .+++.|++++
T Consensus 62 G~~~~~~~~---~~--~~~~~g~~l~ 82 (83)
T cd01342 62 GDIVGIVLK---DK--DDIKIGDTLT 82 (83)
T ss_pred CCEEEEEEc---cc--cccCCCCEec
Confidence 999999765 11 1677888774
No 353
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=2.7e-06 Score=79.77 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=85.0
Q ss_pred hccCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCC
Q 039945 100 ISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLC 179 (531)
Q Consensus 100 ~~~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (531)
+...-..||.++|.++.|||||+|.|......+.....-++ -+.|.|+.-.. ....+
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~-------------------~p~pkT~eik~----~thvi 97 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSA-------------------EPIPKTTEIKS----ITHVI 97 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCccc-------------------CcccceEEEEe----eeeee
Confidence 33455689999999999999999999754321100000000 01111111100 01111
Q ss_pred CCCCCccccccceeeEEEEecCChh---------------------hHHHHHHHhc-------cccCceEEEEeCCCCCC
Q 039945 180 DVPGFENCRMKLLRHVSFVDCPGHD---------------------ILMATMLNGA-------AIMDGALLLIAANESCP 231 (531)
Q Consensus 180 ~~~g~~~~~~~~~~~i~liDtPG~~---------------------~~~~~~~~~l-------~~aD~~llVvDa~~~~~ 231 (531)
+-.| ..-++++|||||+- .|.+.-+... ...+++++.+.++...+
T Consensus 98 eE~g-------VklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsL 170 (336)
T KOG1547|consen 98 EEKG-------VKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSL 170 (336)
T ss_pred eecc-------eEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCcc
Confidence 1111 12579999999942 2333322222 34578999999887667
Q ss_pred CcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhc
Q 039945 232 QPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQG 278 (531)
Q Consensus 232 ~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~ 278 (531)
.+-+.+.+.-+.. +-.+|-|+-|.|...-++..+-.+.+++.+..
T Consensus 171 rplDieflkrLt~--vvNvvPVIakaDtlTleEr~~FkqrI~~el~~ 215 (336)
T KOG1547|consen 171 RPLDIEFLKRLTE--VVNVVPVIAKADTLTLEERSAFKQRIRKELEK 215 (336)
T ss_pred CcccHHHHHHHhh--hheeeeeEeecccccHHHHHHHHHHHHHHHHh
Confidence 7777777754442 34578889999988766655666677766654
No 354
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.51 E-value=5.5e-07 Score=81.70 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=56.6
Q ss_pred CceEEEEeCCCCCCCcchHHHH-HHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccc
Q 039945 218 DGALLLIAANESCPQPQTSEHL-AAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYN 296 (531)
Q Consensus 218 D~~llVvDa~~~~~~~qt~e~l-~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~g 296 (531)
|++|+|+|+..+ ......... ..+...+ +|+|+|+||+|+.+.+........+.+. ...+++++||++|.|
T Consensus 1 Dvvl~VvD~~~p-~~~~~~~i~~~~~~~~~-~p~IiVlNK~Dl~~~~~~~~~~~~~~~~------~~~~ii~vSa~~~~g 72 (155)
T cd01849 1 DVILEVLDARDP-LGTRSPDIERVLIKEKG-KKLILVLNKADLVPKEVLRKWLAYLRHS------YPTIPFKISATNGQG 72 (155)
T ss_pred CEEEEEEeccCC-ccccCHHHHHHHHhcCC-CCEEEEEechhcCCHHHHHHHHHHHHhh------CCceEEEEeccCCcC
Confidence 789999999876 344343333 2444444 5689999999998654333322222221 235789999999999
Q ss_pred hHHHHHHHHccC
Q 039945 297 IDVVCEYIVKKI 308 (531)
Q Consensus 297 i~~L~~~L~~~l 308 (531)
+++|++.|.+.+
T Consensus 73 i~~L~~~i~~~~ 84 (155)
T cd01849 73 IEKKESAFTKQT 84 (155)
T ss_pred hhhHHHHHHHHh
Confidence 999999997554
No 355
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.51 E-value=4e-07 Score=95.34 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=98.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceec---ceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELER---NITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLC 179 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~---git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (531)
...+||+++|..|+|||||+-+|+...- ..+..+ -|++-
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef---~~~VP~rl~~i~IP----------------------------------- 48 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEF---VDAVPRRLPRILIP----------------------------------- 48 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhc---cccccccCCccccC-----------------------------------
Confidence 4458999999999999999999986531 111111 12221
Q ss_pred CCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC-CCcchHHHHHHHHHcC----CceEEEEE
Q 039945 180 DVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC-PQPQTSEHLAAVEIMR----LQHIIILQ 254 (531)
Q Consensus 180 ~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~-~~~qt~e~l~~~~~~~----~~~iIvvi 254 (531)
..........+++||+-..+-.......++.||++++|.+.++.. ...-+..++-+++.+. -.|+|+|.
T Consensus 49 ------advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvG 122 (625)
T KOG1707|consen 49 ------ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVG 122 (625)
T ss_pred ------CccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEe
Confidence 111112256899999976655555677889999999999887631 1111222333444444 24799999
Q ss_pred eccCCccHHHH--HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 255 NKVDLIQENVA--INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 255 NK~Dl~~~~~~--~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
||+|..+.... +.....|....+ .....|.+||++-.++.+++-+-.+.+
T Consensus 123 NK~d~~~~~~~s~e~~~~pim~~f~----EiEtciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 123 NKSDNGDNENNSDEVNTLPIMIAFA----EIETCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred eccCCccccccchhHHHHHHHHHhH----HHHHHHhhhhhhhhhhHhhhhhhhhee
Confidence 99998754321 111122222111 223578899999999998888776554
No 356
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.50 E-value=4e-07 Score=91.27 Aligned_cols=100 Identities=14% Similarity=0.188 Sum_probs=70.1
Q ss_pred cCChh-hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhc
Q 039945 200 CPGHD-ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQG 278 (531)
Q Consensus 200 tPG~~-~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~ 278 (531)
-|||- +-.++....+..+|++|+|+|+..+ ......+....+ +.+|+++|+||+|+.+....... .+++..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p-~~~~~~~l~~~~---~~kp~iiVlNK~DL~~~~~~~~~----~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIP-LSSENPMIDKII---GNKPRLLILNKSDLADPEVTKKW----IEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCC-CCCCChhHHHHh---CCCCEEEEEEchhcCCHHHHHHH----HHHHHH
Confidence 48885 4556777888999999999999876 444444433333 24678999999999765332222 222221
Q ss_pred ccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 279 TVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 279 ~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
...+++++||+++.|++.|++.|...++.
T Consensus 79 ---~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 ---QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 13578999999999999999998876653
No 357
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.49 E-value=1.5e-07 Score=85.56 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..++|+++|.+|+|||||+|+|.+.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcC
Confidence 4578999999999999999999985
No 358
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.43 E-value=9e-07 Score=77.23 Aligned_cols=162 Identities=13% Similarity=0.177 Sum_probs=103.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|.+..|||||+-...|..-+ +| +.-+..+.+-.- ++.+.|
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~d---e~--~~q~~GvN~mdk---------------------------t~~i~~- 66 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYD---EE--YTQTLGVNFMDK---------------------------TVSIRG- 66 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhH---HH--HHHHhCccceee---------------------------EEEecc-
Confidence 489999999999999999888765321 11 111111221111 111111
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce-EEEEEeccCCc---
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH-IIILQNKVDLI--- 260 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~-iIvviNK~Dl~--- 260 (531)
....+.+||..|.++|..+.--+...+-++|+++|-+..+......++...++.++... -|+|.+|-|+.
T Consensus 67 ------t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~l 140 (205)
T KOG1673|consen 67 ------TDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDL 140 (205)
T ss_pred ------eEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcC
Confidence 12678999999999887666556677788999999886533333456666777665321 17789999964
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+++.-..+..+.+++.+ .-+.+.+++|+....|+..++..+...+
T Consensus 141 p~e~Q~~I~~qar~YAk---~mnAsL~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 141 PPELQETISRQARKYAK---VMNASLFFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred CHHHHHHHHHHHHHHHH---HhCCcEEEeeccccccHHHHHHHHHHHH
Confidence 33322233344444443 2357899999999999999998876543
No 359
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.43 E-value=2.8e-07 Score=85.04 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
..++++++|.||+|||||+|+|++..
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~ 141 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSR 141 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcc
Confidence 34789999999999999999999863
No 360
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=1.6e-06 Score=85.89 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=61.5
Q ss_pred eeEEEEecCChh-----------hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHD-----------ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~-----------~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
..+++|||||.- +|..-....+..||.++|++|+..-.+.++..+.+..++-...+ +=||+||.|.++
T Consensus 147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk-iRVVLNKADqVd 225 (532)
T KOG1954|consen 147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK-IRVVLNKADQVD 225 (532)
T ss_pred hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce-eEEEeccccccC
Confidence 579999999952 45555556678999999999998755777777877777755544 778999999999
Q ss_pred HHHHHHHHHHHHH
Q 039945 262 ENVAINQHEAIMK 274 (531)
Q Consensus 262 ~~~~~~~~~~i~~ 274 (531)
..++...+-.+.-
T Consensus 226 tqqLmRVyGALmW 238 (532)
T KOG1954|consen 226 TQQLMRVYGALMW 238 (532)
T ss_pred HHHHHHHHHHHHH
Confidence 8777666555443
No 361
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.39 E-value=1.6e-06 Score=77.37 Aligned_cols=81 Identities=19% Similarity=0.159 Sum_probs=56.8
Q ss_pred HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc-CCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCE
Q 039945 208 ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM-RLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPV 286 (531)
Q Consensus 208 ~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~i 286 (531)
+...+.+..+|++++|+|+..+ ...+..+....+... ..+|+++|+||+|+.+...... +.+.++. ...++
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p-~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~----~~~~~~~---~~~~i 74 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNP-LLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKA----WAEYFKK---EGIVV 74 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCC-cccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHH----HHHHHHh---cCCeE
Confidence 4567788999999999999887 455555666666554 2367899999999976543322 2233322 23579
Q ss_pred EEecccCccc
Q 039945 287 VPISAQLKYN 296 (531)
Q Consensus 287 i~iSa~~g~g 296 (531)
+++||+++.+
T Consensus 75 i~iSa~~~~~ 84 (141)
T cd01857 75 VFFSALKENA 84 (141)
T ss_pred EEEEecCCCc
Confidence 9999999875
No 362
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.3e-05 Score=80.86 Aligned_cols=138 Identities=14% Similarity=0.216 Sum_probs=84.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCcc------ccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRF------KNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDN 176 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~------~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 176 (531)
.-.+++.++|..|.|||||+|.|.+...... .....+ |..+..
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~--t~~i~~----------------------------- 67 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKE--TVEIES----------------------------- 67 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccc--cceeee-----------------------------
Confidence 4458999999999999999999986532110 001111 111111
Q ss_pred CCCCCCCCccccccceeeEEEEecCChhh-------------HHHHHH------------Hhc--cccCceEEEEeCCCC
Q 039945 177 PLCDVPGFENCRMKLLRHVSFVDCPGHDI-------------LMATML------------NGA--AIMDGALLLIAANES 229 (531)
Q Consensus 177 ~~~~~~g~~~~~~~~~~~i~liDtPG~~~-------------~~~~~~------------~~l--~~aD~~llVvDa~~~ 229 (531)
..+.+.. + ..+..++++||||..| |+.... ..+ ...+++|+.|..+..
T Consensus 68 ~~~~iee--~---g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh 142 (366)
T KOG2655|consen 68 TKVEIEE--N---GVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH 142 (366)
T ss_pred eeeeecC--C---CeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC
Confidence 0111110 0 1126899999999532 222111 112 367899999998754
Q ss_pred CCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhc
Q 039945 230 CPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQG 278 (531)
Q Consensus 230 ~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~ 278 (531)
++.+.+.+.+.-+. ..-++|-|+-|.|.....++....+.+.+.+..
T Consensus 143 gL~p~Di~~Mk~l~--~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~ 189 (366)
T KOG2655|consen 143 GLKPLDIEFMKKLS--KKVNLIPVIAKADTLTKDELNQFKKRIRQDIEE 189 (366)
T ss_pred CCcHhhHHHHHHHh--ccccccceeeccccCCHHHHHHHHHHHHHHHHH
Confidence 46666666554433 223478899999999998888888888887764
No 363
>PRK12289 GTPase RsgA; Reviewed
Probab=98.33 E-value=2.2e-06 Score=87.85 Aligned_cols=86 Identities=26% Similarity=0.251 Sum_probs=59.7
Q ss_pred hccccCceEEEEeCCCCCCCc-chHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecc
Q 039945 213 GAAIMDGALLLIAANESCPQP-QTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISA 291 (531)
Q Consensus 213 ~l~~aD~~llVvDa~~~~~~~-qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa 291 (531)
.+.++|.+++|+|+.++.... ....++..+...++ |+|+|+||+|+++........ +.+.. .+++++++||
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~i-p~ILVlNK~DLv~~~~~~~~~----~~~~~---~g~~v~~iSA 157 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGL-EIVLCLNKADLVSPTEQQQWQ----DRLQQ---WGYQPLFISV 157 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEEEEchhcCChHHHHHHH----HHHHh---cCCeEEEEEc
Confidence 468899999999998652233 22344445555565 579999999998654433222 22221 2457999999
Q ss_pred cCccchHHHHHHHHc
Q 039945 292 QLKYNIDVVCEYIVK 306 (531)
Q Consensus 292 ~~g~gi~~L~~~L~~ 306 (531)
++|.|+++|++.|..
T Consensus 158 ~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 158 ETGIGLEALLEQLRN 172 (352)
T ss_pred CCCCCHHHHhhhhcc
Confidence 999999999999864
No 364
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.30 E-value=9.6e-06 Score=63.90 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=56.3
Q ss_pred CCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEE
Q 039945 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFA 396 (531)
Q Consensus 317 ~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a 396 (531)
.|..+.|...|-.++ +. ++.|+|..|+|++|..| . |. ...+|++|+.+++++++|
T Consensus 3 ~p~ki~Ilp~~vFr~--------~~-~IvG~V~~G~ik~G~~l---~--------G~-----~iG~I~sIe~~~k~v~~A 57 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQ--------SD-AIVGEVLEGIIKPGYPL---D--------GR-----KIGRIKSIEDNGKNVDEA 57 (81)
T ss_dssp -SEEEEEEEEEEECT--------CC-EEEEEEEEEEEETT-EE---C--------SS-----CEEEEEEEEETTEEESEE
T ss_pred CceEEEECCcCEEec--------CC-eEEEEEeeeEEeCCCcc---C--------CE-----EEEEEEEeEECCcCcccc
Confidence 355777777776544 56 66679999999999888 2 11 257899999999999999
Q ss_pred ecCceEEEeeecCccccccccccceee
Q 039945 397 VPGGLIGVGTTMDPTLTRADRLVGQVL 423 (531)
Q Consensus 397 ~aG~~v~i~l~~~~~~~~~~i~~G~vl 423 (531)
.+|+.|++.+. +.. ++..|++|
T Consensus 58 ~~G~eVai~Ie---g~~--~i~eGDiL 79 (81)
T PF14578_consen 58 KKGDEVAISIE---GPT--QIKEGDIL 79 (81)
T ss_dssp ETT-EEEEEEE---T----TB-TT-EE
T ss_pred CCCCEEEEEEe---CCc--cCCCCCEE
Confidence 99999999987 443 77778876
No 365
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.1e-05 Score=86.14 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=56.8
Q ss_pred eeEEEEecCChh---hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH--HHHHH
Q 039945 193 RHVSFVDCPGHD---ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE--NVAIN 267 (531)
Q Consensus 193 ~~i~liDtPG~~---~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~--~~~~~ 267 (531)
..+.++|.||.. .+..-.-.....+|++|||+.|... ......+.+..... +.|.++|+.||+|.... +-.+.
T Consensus 206 nDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt-lt~sek~Ff~~vs~-~KpniFIlnnkwDasase~ec~e~ 283 (749)
T KOG0448|consen 206 NDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT-LTLSEKQFFHKVSE-EKPNIFILNNKWDASASEPECKED 283 (749)
T ss_pred ccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH-hHHHHHHHHHHhhc-cCCcEEEEechhhhhcccHHHHHH
Confidence 468999999953 2333333445789999999999764 33333334443333 35778888999998642 22223
Q ss_pred HHHHHHHHHh--cccCCCCCEEEecccC
Q 039945 268 QHEAIMKFIQ--GTVADGAPVVPISAQL 293 (531)
Q Consensus 268 ~~~~i~~~l~--~~~~~~~~ii~iSa~~ 293 (531)
+..++.+ |+ ........+++|||+.
T Consensus 284 V~~Qi~e-L~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 284 VLKQIHE-LSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHh-cCcccHhhhcCeeEEEeccc
Confidence 3333332 21 1112244688899554
No 366
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.16 E-value=2.1e-06 Score=87.27 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
...++.++|.||+|||||||+|+|..
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~ 156 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKK 156 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhccc
Confidence 34789999999999999999999864
No 367
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.15 E-value=3.2e-06 Score=76.65 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
...+++++|.+|+|||||+|+|++..
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccc
Confidence 45789999999999999999999863
No 368
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.15 E-value=9.3e-06 Score=79.39 Aligned_cols=87 Identities=20% Similarity=0.204 Sum_probs=58.5
Q ss_pred hccccCceEEEEeCCCCCCCc-chHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecc
Q 039945 213 GAAIMDGALLLIAANESCPQP-QTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISA 291 (531)
Q Consensus 213 ~l~~aD~~llVvDa~~~~~~~-qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa 291 (531)
.++++|.+++|+|+.++.... ....++..+...++ ++++|+||+||.+...... +.+ +.++. .+.+++++||
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i-~~vIV~NK~DL~~~~~~~~--~~~-~~~~~---~g~~v~~~SA 105 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNI-EPIIVLNKIDLLDDEDMEK--EQL-DIYRN---IGYQVLMTSS 105 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEEEECcccCCCHHHHH--HHH-HHHHH---CCCeEEEEec
Confidence 568899999999998652222 22334444555564 5788999999975432221 122 22222 3468999999
Q ss_pred cCccchHHHHHHHHc
Q 039945 292 QLKYNIDVVCEYIVK 306 (531)
Q Consensus 292 ~~g~gi~~L~~~L~~ 306 (531)
++|+|+++|++.|.+
T Consensus 106 ktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 106 KNQDGLKELIEALQN 120 (245)
T ss_pred CCchhHHHHHhhhcC
Confidence 999999999998863
No 369
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.13 E-value=1e-05 Score=75.60 Aligned_cols=146 Identities=15% Similarity=0.131 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|.++|.+|+||||+=..+...... ..-..-|-|+++..+. +.+.|
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a--~D~~rlg~tidveHsh-----------------------------~RflG-- 51 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIA--RDTRRLGATIDVEHSH-----------------------------VRFLG-- 51 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhh--hhhhccCCcceeeehh-----------------------------hhhhh--
Confidence 57899999999999987666422110 0011234455554322 22222
Q ss_pred cccccceeeEEEEecCChhhHHHHHHH-----hccccCceEEEEeCCCCCCCcchHHHH----H-HHHHcCCceEEEEEe
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLN-----GAAIMDGALLLIAANESCPQPQTSEHL----A-AVEIMRLQHIIILQN 255 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~-----~l~~aD~~llVvDa~~~~~~~qt~e~l----~-~~~~~~~~~iIvviN 255 (531)
+..+++||+.|.+.|+++..+ ..+..+++++|+|++... ...+.++. + +++.....++++.+.
T Consensus 52 ------nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e-~~~D~~~yqk~Le~ll~~SP~AkiF~l~h 124 (295)
T KOG3886|consen 52 ------NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESRE-MEKDFHYYQKCLEALLQNSPEAKIFCLLH 124 (295)
T ss_pred ------hheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchh-hhhhHHHHHHHHHHHHhcCCcceEEEEEe
Confidence 267899999999999888766 357889999999997542 22222222 2 222223345889999
Q ss_pred ccCCccHHHHHHHHHHHHH---HHhcccCCCCCEEEecccC
Q 039945 256 KVDLIQENVAINQHEAIMK---FIQGTVADGAPVVPISAQL 293 (531)
Q Consensus 256 K~Dl~~~~~~~~~~~~i~~---~l~~~~~~~~~ii~iSa~~ 293 (531)
|+|++..+..+...++-.+ .++. .-...++|+|-..
T Consensus 125 KmDLv~~d~r~~if~~r~~~l~~~s~--~~~~~~f~TsiwD 163 (295)
T KOG3886|consen 125 KMDLVQEDARELIFQRRKEDLRRLSR--PLECKCFPTSIWD 163 (295)
T ss_pred echhcccchHHHHHHHHHHHHHHhcc--cccccccccchhh
Confidence 9999865443333322222 2221 2235677777554
No 370
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.12 E-value=2.6e-06 Score=80.03 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
..+++++|.+|+|||||+|+|++..
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999999753
No 371
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.11 E-value=1.9e-05 Score=63.89 Aligned_cols=79 Identities=20% Similarity=0.150 Sum_probs=55.2
Q ss_pred CCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeec----ccc
Q 039945 317 DPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAE----QNE 392 (531)
Q Consensus 317 ~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~----~~~ 392 (531)
.||.+.|+... .|++.|.++++||.+|+|+.||.|...-. ...+|..|... ..+
T Consensus 2 ~p~~~~Vfkv~--------~d~~~G~la~~RV~sG~l~~g~~v~~~~~--------------~~~~v~~l~~~~g~~~~~ 59 (85)
T cd03690 2 SELSGTVFKIE--------RDDKGERLAYLRLYSGTLRLRDSVRVNRE--------------EKIKITELRVFNNGEVVT 59 (85)
T ss_pred CCcEEEEEEeE--------ECCCCCeEEEEEEccCEEcCCCEEEeCCC--------------cEEEeceeEEEeCCCeEE
Confidence 57888885543 46678999999999999999999974320 12345555443 247
Q ss_pred eeEEecCceEEEeeecCccccccccccceeec
Q 039945 393 LQFAVPGGLIGVGTTMDPTLTRADRLVGQVLG 424 (531)
Q Consensus 393 v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~ 424 (531)
+++|.|||++++. ++ +++..|+.|+
T Consensus 60 v~~~~aGdI~ai~-----gl--~~~~~Gdtl~ 84 (85)
T cd03690 60 ADTVTAGDIAILT-----GL--KGLRVGDVLG 84 (85)
T ss_pred CcEECCCCEEEEE-----CC--CCCcCccccC
Confidence 8999999999873 22 2445666653
No 372
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.10 E-value=4.4e-06 Score=83.78 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
..++++++|.||+|||||+|+|++..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~ 145 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKK 145 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999999863
No 373
>PRK00098 GTPase RsgA; Reviewed
Probab=98.09 E-value=1.3e-05 Score=80.80 Aligned_cols=86 Identities=24% Similarity=0.285 Sum_probs=56.7
Q ss_pred hccccCceEEEEeCCCCCCCcch-HHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecc
Q 039945 213 GAAIMDGALLLIAANESCPQPQT-SEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISA 291 (531)
Q Consensus 213 ~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa 291 (531)
.+.++|.+++|+|+.++...... ...+..+...++ |+++|+||+|+.+... ..+++.+.++. ...+++++||
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~i-p~iIVlNK~DL~~~~~---~~~~~~~~~~~---~g~~v~~vSA 149 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGI-KPIIVLNKIDLLDDLE---EARELLALYRA---IGYDVLELSA 149 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEEEEhHHcCCCHH---HHHHHHHHHHH---CCCeEEEEeC
Confidence 35889999999999764222222 334444555665 4789999999973221 11222222222 2468999999
Q ss_pred cCccchHHHHHHHH
Q 039945 292 QLKYNIDVVCEYIV 305 (531)
Q Consensus 292 ~~g~gi~~L~~~L~ 305 (531)
++|+|+++|++.|.
T Consensus 150 ~~g~gi~~L~~~l~ 163 (298)
T PRK00098 150 KEGEGLDELKPLLA 163 (298)
T ss_pred CCCccHHHHHhhcc
Confidence 99999999998874
No 374
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.08 E-value=1.2e-05 Score=80.49 Aligned_cols=84 Identities=26% Similarity=0.345 Sum_probs=57.0
Q ss_pred ccccCceEEEEeCCCCCCCcc-hHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEeccc
Q 039945 214 AAIMDGALLLIAANESCPQPQ-TSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQ 292 (531)
Q Consensus 214 l~~aD~~llVvDa~~~~~~~q-t~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~ 292 (531)
+.++|.+++|+|+..+..... ...++..+...++ |+++|+||+|+.+...... .. .... ....+++++||+
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~i-p~iIVlNK~DL~~~~~~~~---~~-~~~~---~~g~~v~~vSA~ 147 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGI-EPVIVLTKADLLDDEEEEL---EL-VEAL---ALGYPVLAVSAK 147 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCC-CEEEEEEHHHCCChHHHHH---HH-HHHH---hCCCeEEEEECC
Confidence 688999999999987621322 2334455565665 4789999999976522111 11 1111 134689999999
Q ss_pred CccchHHHHHHHH
Q 039945 293 LKYNIDVVCEYIV 305 (531)
Q Consensus 293 ~g~gi~~L~~~L~ 305 (531)
+|.|+++|.+.|.
T Consensus 148 ~g~gi~~L~~~L~ 160 (287)
T cd01854 148 TGEGLDELREYLK 160 (287)
T ss_pred CCccHHHHHhhhc
Confidence 9999999998875
No 375
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.08 E-value=5.6e-05 Score=74.05 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=39.9
Q ss_pred eEEEEEeccCCccH---------HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 249 HIIILQNKVDLIQE---------NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 249 ~iIvviNK~Dl~~~---------~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+++||++|+|.+.- +.+..+...+++|+-. -....|.+|++...|++-|..+|....
T Consensus 224 ~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr---~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 224 PVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLR---YGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHH---cCceeEEeecccccchHHHHHHHHHHh
Confidence 58999999998531 1222333344454432 346789999999999999999998543
No 376
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.07 E-value=2.2e-05 Score=81.20 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=64.4
Q ss_pred hhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHH-HHHHHHHHHHHHHhcccC
Q 039945 203 HDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQEN-VAINQHEAIMKFIQGTVA 281 (531)
Q Consensus 203 ~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~-~~~~~~~~i~~~l~~~~~ 281 (531)
.++|..........+|++++|+|+.+. ......+.. +..+.+++++|+||+|+.... ..+...+.+.++++..+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~-~~s~~~~l~---~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~ 125 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDF-EGSLIPELK---RFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGL 125 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCC-CCCccHHHH---HHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCC
Confidence 346666444445788999999999764 222222222 223456799999999997532 122333344444443222
Q ss_pred CCCCEEEecccCccchHHHHHHHHcc
Q 039945 282 DGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 282 ~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
....++++||++|+|+++|++.|.+.
T Consensus 126 ~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 126 KPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 22368999999999999999999753
No 377
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.06 E-value=1.4e-05 Score=80.95 Aligned_cols=94 Identities=19% Similarity=0.122 Sum_probs=53.8
Q ss_pred eeEEEEecCChhh----H---HHHHHHhc-----cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCc
Q 039945 193 RHVSFVDCPGHDI----L---MATMLNGA-----AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLI 260 (531)
Q Consensus 193 ~~i~liDtPG~~~----~---~~~~~~~l-----~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~ 260 (531)
+.+.||||||... . ...+.+.+ ..++..++|+||+.+ ... ........+..+ ..-+++||+|..
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g-~~~-~~~a~~f~~~~~--~~giIlTKlD~t 272 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG-QNA-LSQAKAFHEAVG--LTGIILTKLDGT 272 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC-hHH-HHHHHHHHhhCC--CCEEEEECCCCC
Confidence 6899999999431 2 22222221 357889999999865 111 111112222333 346789999965
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHH
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVC 301 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~ 301 (531)
..- -..+..... ...|+.+++ +|+++++|.
T Consensus 273 ~~~--G~~l~~~~~-------~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 273 AKG--GVVFAIADE-------LGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCc--cHHHHHHHH-------HCCCEEEEe--CCCChhhCc
Confidence 421 122222221 257999988 888887664
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=98.05 E-value=1.5e-05 Score=81.08 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=55.5
Q ss_pred eeEEEEecCChh----hHHHHHHHh--ccccCceEEEEeCCCCCCCcchHHHHHH-HHHcCCceEEEEEeccCCccHHHH
Q 039945 193 RHVSFVDCPGHD----ILMATMLNG--AAIMDGALLLIAANESCPQPQTSEHLAA-VEIMRLQHIIILQNKVDLIQENVA 265 (531)
Q Consensus 193 ~~i~liDtPG~~----~~~~~~~~~--l~~aD~~llVvDa~~~~~~~qt~e~l~~-~~~~~~~~iIvviNK~Dl~~~~~~ 265 (531)
..+.||||||.. .++..+... ...+|.++||+|+..+. ...+.... ....++ --+++||+|....--
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~~~--~giIlTKlD~~~~~G- 296 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAVGI--DGVILTKVDADAKGG- 296 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcCCC--CEEEEeeecCCCCcc-
Confidence 579999999943 333333221 24589999999997541 22222222 223454 356799999864211
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHH
Q 039945 266 INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCE 302 (531)
Q Consensus 266 ~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~ 302 (531)
..+..... ...|+.+++ +|+++++|..
T Consensus 297 -~~ls~~~~-------~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 297 -AALSIAYV-------IGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred -HHHHHHHH-------HCcCEEEEe--CCCChhhccc
Confidence 12221211 257888887 7999887643
No 379
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.05 E-value=6.5e-06 Score=73.37 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
+++++|.+|+|||||+|+|++..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~ 107 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKK 107 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999753
No 380
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.04 E-value=3.7e-05 Score=61.81 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=49.2
Q ss_pred ccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeee----cccceeEEecCceEEEeeecCcc
Q 039945 336 VDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFA----EQNELQFAVPGGLIGVGTTMDPT 411 (531)
Q Consensus 336 ~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~----~~~~v~~a~aG~~v~i~l~~~~~ 411 (531)
.+++.|.+.++||.+|+|++||.|...... ...+|..|.. ...++++|.|||++.+. +
T Consensus 10 ~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~-------------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-----g 71 (83)
T cd04092 10 HDPQRGPLTFVRVYSGTLKRGSALYNTNTG-------------KKERISRLLQPFADQYQEIPSLSAGNIGVIT-----G 71 (83)
T ss_pred cCCCCCeEEEEEEecCEECCCCEEEECCCC-------------CEEEeeEEEEEECCCceECCeeCCCCEEEEE-----C
Confidence 466789999999999999999999865431 1234444433 34689999999999873 3
Q ss_pred ccccccccceeec
Q 039945 412 LTRADRLVGQVLG 424 (531)
Q Consensus 412 ~~~~~i~~G~vl~ 424 (531)
+ +++..|+.|+
T Consensus 72 l--~~~~~Gdtl~ 82 (83)
T cd04092 72 L--KQTRTGDTLV 82 (83)
T ss_pred C--CCcccCCEEe
Confidence 2 3466777665
No 381
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.04 E-value=6.6e-06 Score=82.02 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
..++++++|.||+|||||+|+|++..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~ 142 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKK 142 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999999753
No 382
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=8e-06 Score=74.00 Aligned_cols=158 Identities=17% Similarity=0.141 Sum_probs=99.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH-CCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~-g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...+++++|..+.||+|++++.+ |... .....|+.+ ......+.++ .
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe------~~y~at~Gv--~~~pl~f~tn------------------------~ 56 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFE------KTYPATLGV--EVHPLLFDTN------------------------R 56 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccce------ecccCccee--EEeeeeeecc------------------------c
Confidence 45789999999999999999875 4321 111112222 1111111110 0
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC-CCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC-PQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~-~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
+ ..++..|||+|.+.|....--..-+.-++++++|..... ...-.+.|-.+++..+.-|++++.||.|..+
T Consensus 57 ---g-----~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 57 ---G-----QIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA 128 (216)
T ss_pred ---C-----cEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc
Confidence 1 278999999999887765555555667889999987531 1222344555565555557999999999765
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.....+ --.+. ...+..++.+||++..|.+.=+-+|.+.+
T Consensus 129 r~~k~k----~v~~~---rkknl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 129 RKVKAK----PVSFH---RKKNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred cccccc----cceee---ecccceeEEeecccccccccchHHHhhhh
Confidence 421000 00111 13567899999999999998888887654
No 383
>PRK12288 GTPase RsgA; Reviewed
Probab=98.03 E-value=3.2e-05 Score=79.33 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=58.3
Q ss_pred ccccCceEEEEeCCCCCCCcc-hHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEeccc
Q 039945 214 AAIMDGALLLIAANESCPQPQ-TSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQ 292 (531)
Q Consensus 214 l~~aD~~llVvDa~~~~~~~q-t~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~ 292 (531)
+.++|.+++|.+.... .... ...++..+...+++ .++|+||+|+.+...... ..+..+.+.. ...+++++||+
T Consensus 118 aANvD~vlIV~s~~p~-~s~~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~~~~~~-~~~~~~~y~~---~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPE-LSLNIIDRYLVACETLGIE-PLIVLNKIDLLDDEGRAF-VNEQLDIYRN---IGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCC-CCHHHHHHHHHHHHhcCCC-EEEEEECccCCCcHHHHH-HHHHHHHHHh---CCCeEEEEeCC
Confidence 5789999999987644 3332 23344556666755 688999999986432212 2222222222 24689999999
Q ss_pred CccchHHHHHHHHc
Q 039945 293 LKYNIDVVCEYIVK 306 (531)
Q Consensus 293 ~g~gi~~L~~~L~~ 306 (531)
+++|+++|+++|..
T Consensus 192 tg~GideL~~~L~~ 205 (347)
T PRK12288 192 TGEGLEELEAALTG 205 (347)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999999974
No 384
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.03 E-value=4.4e-06 Score=75.48 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
..++++|++|||||||+|+|++..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999863
No 385
>PRK01889 GTPase RsgA; Reviewed
Probab=98.01 E-value=2.8e-05 Score=80.29 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=61.5
Q ss_pred ccccCceEEEEeCCCCCCCc-chHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEeccc
Q 039945 214 AAIMDGALLLIAANESCPQP-QTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQ 292 (531)
Q Consensus 214 l~~aD~~llVvDa~~~~~~~-qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~ 292 (531)
+.++|.+++|+++... ... .....+..+...+++| ++|+||+||.+.. +...+++.++ ....+++++|++
T Consensus 110 aANvD~vliV~s~~p~-~~~~~ldr~L~~a~~~~i~p-iIVLNK~DL~~~~--~~~~~~~~~~-----~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-FNLRRIERYLALAWESGAEP-VIVLTKADLCEDA--EEKIAEVEAL-----APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCC-CChhHHHHHHHHHHHcCCCE-EEEEEChhcCCCH--HHHHHHHHHh-----CCCCcEEEEECC
Confidence 5789999999999755 454 4445667778889876 7799999998642 1223334333 245789999999
Q ss_pred CccchHHHHHHHH
Q 039945 293 LKYNIDVVCEYIV 305 (531)
Q Consensus 293 ~g~gi~~L~~~L~ 305 (531)
+|.|+++|.++|.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999999985
No 386
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.00 E-value=6.7e-05 Score=79.54 Aligned_cols=57 Identities=21% Similarity=0.326 Sum_probs=39.7
Q ss_pred eEEEEEeccCCccH---------HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 249 HIIILQNKVDLIQE---------NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 249 ~iIvviNK~Dl~~~---------~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
|++||++|.|.... +.+.-+.+.++.++-. .+...|.+|++...+++.|+.+|...+
T Consensus 198 pi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~---yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 198 PIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLK---YGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred ceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHh---cCCeEEEeeccccccHHHHHHHHHHHh
Confidence 69999999997531 1222333344444432 356789999999999999999988654
No 387
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.99 E-value=3.1e-05 Score=76.86 Aligned_cols=93 Identities=20% Similarity=0.160 Sum_probs=53.6
Q ss_pred eeEEEEecCChhh----HHH---HHHHhc-----cccCceEEEEeCCCCCCCcchHHHH-HHHHHcCCceEEEEEeccCC
Q 039945 193 RHVSFVDCPGHDI----LMA---TMLNGA-----AIMDGALLLIAANESCPQPQTSEHL-AAVEIMRLQHIIILQNKVDL 259 (531)
Q Consensus 193 ~~i~liDtPG~~~----~~~---~~~~~l-----~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~~~~~~iIvviNK~Dl 259 (531)
+.+.||||||... .+. ...+.+ ..+|.++||+|++.+ ....... ...+..++ .-+++||+|.
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~---~~~~~~~~~f~~~~~~--~g~IlTKlDe 229 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG---QNALEQAKVFNEAVGL--TGIILTKLDG 229 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC---HHHHHHHHHHHhhCCC--CEEEEEccCC
Confidence 6899999999542 221 112222 238999999999754 1122222 33333443 4678999998
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHH
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVC 301 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~ 301 (531)
..... ..+..... ...|+.+++ +|+++++|.
T Consensus 230 ~~~~G--~~l~~~~~-------~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 230 TAKGG--IILSIAYE-------LKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCcc--HHHHHHHH-------HCcCEEEEe--CCCChHhCc
Confidence 64311 11111111 247888887 788887664
No 388
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=97.98 E-value=6.8e-05 Score=60.69 Aligned_cols=81 Identities=30% Similarity=0.440 Sum_probs=54.3
Q ss_pred CEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeee----ccccee
Q 039945 319 PNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFA----EQNELQ 394 (531)
Q Consensus 319 ~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~----~~~~v~ 394 (531)
|++.|+++. ++++.|.++++||.+|+|++||.|.+...+ +.. ...+|..|.. ...+++
T Consensus 1 ~~~~vfk~~--------~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~------~~~----~~~~v~~l~~~~g~~~~~v~ 62 (86)
T cd03691 1 LQMLVTTLD--------YDDYVGRIAIGRIFRGTVKVGQQVAVVKRD------GKI----EKAKITKLFGFEGLKRVEVE 62 (86)
T ss_pred CeEEEEEeE--------ecCCCCeEEEEEEEeCEEcCCCEEEEEcCC------CCE----EEEEEeeEeeeeCCCeeECc
Confidence 456775543 566789999999999999999999875431 000 1234555533 235789
Q ss_pred EEecCceEEEeeecCccccccccccceeec
Q 039945 395 FAVPGGLIGVGTTMDPTLTRADRLVGQVLG 424 (531)
Q Consensus 395 ~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~ 424 (531)
++.|||++++. ++ +++..|+.|+
T Consensus 63 ~~~aG~I~~i~-----gl--~~~~~Gdtl~ 85 (86)
T cd03691 63 EAEAGDIVAIA-----GI--EDITIGDTIC 85 (86)
T ss_pred EECCCCEEEEE-----CC--CCCcccceec
Confidence 99999999763 22 3455676653
No 389
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=97.96 E-value=6.7e-05 Score=60.30 Aligned_cols=69 Identities=23% Similarity=0.224 Sum_probs=49.5
Q ss_pred ccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeee---c-ccceeEEecCceEEEeeecCcc
Q 039945 336 VDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFA---E-QNELQFAVPGGLIGVGTTMDPT 411 (531)
Q Consensus 336 ~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~---~-~~~v~~a~aG~~v~i~l~~~~~ 411 (531)
++++.|.++++||.+|+|++||.|.+.... ...+|..|.. . ..++++|.|||++.+. +
T Consensus 10 ~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~-------------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-----g 71 (83)
T cd04088 10 HDPFVGKLSFVRVYSGTLKAGSTLYNSTKG-------------KKERVGRLLRMHGKKQEEVEEAGAGDIGAVA-----G 71 (83)
T ss_pred cCCCCceEEEEEEecCEEcCCCEEEECCCC-------------cEEEeeEEEEEcCCCceECCEeCCCCEEEEE-----C
Confidence 466789999999999999999999876432 1234555533 2 3578999999999983 3
Q ss_pred ccccccccceeec
Q 039945 412 LTRADRLVGQVLG 424 (531)
Q Consensus 412 ~~~~~i~~G~vl~ 424 (531)
+ +++..|+.++
T Consensus 72 ~--~~~~~Gdtl~ 82 (83)
T cd04088 72 L--KDTATGDTLC 82 (83)
T ss_pred C--CCCccCCEee
Confidence 2 2355677664
No 390
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.95 E-value=1.7e-05 Score=81.10 Aligned_cols=36 Identities=22% Similarity=0.149 Sum_probs=28.8
Q ss_pred eeEEEEecCChhh-------HHHHHHHhccccCceEEEEeCCC
Q 039945 193 RHVSFVDCPGHDI-------LMATMLNGAAIMDGALLLIAANE 228 (531)
Q Consensus 193 ~~i~liDtPG~~~-------~~~~~~~~l~~aD~~llVvDa~~ 228 (531)
..+.++|.||... .....+..++.+|++++|||+..
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 4689999999532 44567778899999999999964
No 391
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=97.95 E-value=7.7e-05 Score=60.42 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=49.1
Q ss_pred ccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccc-cc
Q 039945 336 VDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTL-TR 414 (531)
Q Consensus 336 ~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~-~~ 414 (531)
++++.|.++++||.+|+|+.||.+...... . .. ...+|.-+.....++++|.|||++.+.- ++ ..
T Consensus 10 ~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~----~--~~----~i~~l~~~~~~~~~~~~~~aGdI~~v~~----g~~~l 75 (86)
T cd03699 10 YDPYRGVIALVRVFDGTLKKGDKIRFMSTG----K--EY----EVEEVGIFRPEMTPTDELSAGQVGYIIA----GIKTV 75 (86)
T ss_pred ccCCCCEEEEEEEEcCEEcCCCEEEEecCC----C--eE----EEEEEEEECCCccCCceECCCCEEEEEc----ccccc
Confidence 567789999999999999999999865321 1 10 1123432222346889999999998841 11 11
Q ss_pred cccccceeec
Q 039945 415 ADRLVGQVLG 424 (531)
Q Consensus 415 ~~i~~G~vl~ 424 (531)
+++..|+.|+
T Consensus 76 ~~~~~Gdtl~ 85 (86)
T cd03699 76 KDARVGDTIT 85 (86)
T ss_pred CccccccEee
Confidence 3455677664
No 392
>PRK12288 GTPase RsgA; Reviewed
Probab=97.92 E-value=7.7e-06 Score=83.78 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.++|+|.+|+|||||+|+|++..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 47999999999999999999763
No 393
>PRK12289 GTPase RsgA; Reviewed
Probab=97.87 E-value=1e-05 Score=82.87 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.++|+|.+|+|||||+|+|++..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 48999999999999999999753
No 394
>PRK13796 GTPase YqeH; Provisional
Probab=97.86 E-value=1.4e-05 Score=82.75 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
...++.++|.+|+|||||+|+|++.
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhh
Confidence 3468999999999999999999965
No 395
>PRK13796 GTPase YqeH; Provisional
Probab=97.85 E-value=9.3e-05 Score=76.70 Aligned_cols=98 Identities=21% Similarity=0.164 Sum_probs=61.5
Q ss_pred hHHHHHHHhccccC-ceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHH-HHHHHHHHHHHHhcccCC
Q 039945 205 ILMATMLNGAAIMD-GALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENV-AINQHEAIMKFIQGTVAD 282 (531)
Q Consensus 205 ~~~~~~~~~l~~aD-~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~-~~~~~~~i~~~l~~~~~~ 282 (531)
+|. .++..+...| ++++|||+.+. ...... .+ .+..+.+++++|+||+|+..... ..+..+.+..+.+..+..
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~-~~s~~~-~L--~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~ 132 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDF-NGSWIP-GL--HRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR 132 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccC-CCchhH-HH--HHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC
Confidence 444 4677777666 99999999764 222222 22 12233467899999999975321 112222333333322222
Q ss_pred CCCEEEecccCccchHHHHHHHHcc
Q 039945 283 GAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 283 ~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
...++.+||++|.|+++|++.|.+.
T Consensus 133 ~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 133 PVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3368999999999999999999754
No 396
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.84 E-value=6.9e-05 Score=72.28 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.+...|+|+|.+++|||||+|.|+|.
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~ 30 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGT 30 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCC
Confidence 45578999999999999999999986
No 397
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=97.83 E-value=8.9e-05 Score=59.88 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=48.1
Q ss_pred cCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEee---ec-ccceeEEecCceEEEeeecCccc
Q 039945 337 DDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLF---AE-QNELQFAVPGGLIGVGTTMDPTL 412 (531)
Q Consensus 337 ~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~---~~-~~~v~~a~aG~~v~i~l~~~~~~ 412 (531)
+++.|.++++||.+|+|+.||.|...... . ..+|..|. .. +.++++|.|||++++. ++
T Consensus 12 ~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~-------~------~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~-----gl 73 (85)
T cd03689 12 PAHRDRIAFVRVCSGKFERGMKVKHVRLG-------K------EVRLSNPQQFFAQDRETVDEAYPGDIIGLV-----NP 73 (85)
T ss_pred CCCCcEEEEEEEECCEEcCCCEEEEcCCC-------C------EEEeeEeEEEecCCeeEcCEECCCCEEEEE-----CC
Confidence 56689999999999999999999754321 1 12344443 32 3578999999999984 22
Q ss_pred cccccccceeec
Q 039945 413 TRADRLVGQVLG 424 (531)
Q Consensus 413 ~~~~i~~G~vl~ 424 (531)
+++..|+.||
T Consensus 74 --~~~~~Gdtl~ 83 (85)
T cd03689 74 --GNFQIGDTLT 83 (85)
T ss_pred --CCccccCEee
Confidence 3456787776
No 398
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.81 E-value=1.8e-05 Score=81.83 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..++.++|.+|+|||||+|+|++.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999975
No 399
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.77 E-value=4e-06 Score=75.60 Aligned_cols=113 Identities=16% Similarity=0.108 Sum_probs=76.1
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHH-Hc----CC-ceEEEEEeccCCccHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVE-IM----RL-QHIIILQNKVDLIQENVAI 266 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~----~~-~~iIvviNK~Dl~~~~~~~ 266 (531)
.++.|+|.+|+++|...+.-..+.+.++.+|+|.+.......+....+-+. .+ |- -|+|+..||||..... ..
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a-~~ 153 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-KN 153 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh-hh
Confidence 578999999999887777777799999999999987532222222221111 11 11 1468889999986432 22
Q ss_pred HHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 267 NQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 267 ~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+....+.++.++ .....++.+|++...++++..+.|.+++
T Consensus 154 ~~~~~~d~f~ke--ngf~gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 154 EATRQFDNFKKE--NGFEGWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred hhHHHHHHHHhc--cCccceeeeccccccChhHHHHHHHHHH
Confidence 333455555544 3456799999999999999888877654
No 400
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=97.75 E-value=0.0003 Score=56.26 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=46.6
Q ss_pred cCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeee---c-ccceeEEecCceEEEeeecCccc
Q 039945 337 DDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFA---E-QNELQFAVPGGLIGVGTTMDPTL 412 (531)
Q Consensus 337 ~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~---~-~~~v~~a~aG~~v~i~l~~~~~~ 412 (531)
|+. |.++++||.+|+|++||.|.....+ ...+|..|.. . ..+++++.|||++++. ++
T Consensus 11 ~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~-------------~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~-----g~ 71 (81)
T cd04091 11 GRF-GQLTYMRIYQGKLKKGDTIYNVRTG-------------KKVRVPRLVRMHSNEMEEVEEAGAGDICAIF-----GI 71 (81)
T ss_pred CCC-CCEEEEEEecCEEcCCCEEEEcCCC-------------CEEEEeEEEEEeCCCceEccEECCCCEEEEE-----CC
Confidence 444 9999999999999999999876532 1234444433 3 4578999999999863 32
Q ss_pred cccccccceeec
Q 039945 413 TRADRLVGQVLG 424 (531)
Q Consensus 413 ~~~~i~~G~vl~ 424 (531)
+ +..|+.|+
T Consensus 72 --~-~~~Gdtl~ 80 (81)
T cd04091 72 --D-CASGDTFT 80 (81)
T ss_pred --C-cccCCEec
Confidence 2 55677664
No 401
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.75 E-value=4.3e-05 Score=70.43 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..++++++|.+|+|||||+|+|++.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999999975
No 402
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.74 E-value=2.4e-05 Score=78.42 Aligned_cols=59 Identities=25% Similarity=0.526 Sum_probs=44.9
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
.+..+.|++||.||+||||++|.|...... .+.++||-|.-|
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVC--------------------------kvAPIpGETKVW------------ 345 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVC--------------------------KVAPIPGETKVW------------ 345 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccc--------------------------cccCCCCcchHH------------
Confidence 377899999999999999999999754321 145667766653
Q ss_pred CCCccccccceeeEEEEecCCh
Q 039945 182 PGFENCRMKLLRHVSFVDCPGH 203 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~ 203 (531)
.+.+..++|.||||||.
T Consensus 346 -----QYItLmkrIfLIDcPGv 362 (572)
T KOG2423|consen 346 -----QYITLMKRIFLIDCPGV 362 (572)
T ss_pred -----HHHHHHhceeEecCCCc
Confidence 34455589999999995
No 403
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.73 E-value=2.9e-05 Score=80.55 Aligned_cols=58 Identities=24% Similarity=0.457 Sum_probs=43.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|++||.||+||||+||+|.|... ++ ++..||-|+.|-+ +.+
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~Kk------------Vs--------------VS~TPGkTKHFQT-------i~l- 357 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKK------------VS--------------VSSTPGKTKHFQT-------IFL- 357 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCce------------ee--------------eecCCCCcceeEE-------EEc-
Confidence 4579999999999999999999999742 11 3455888888732 111
Q ss_pred CCccccccceeeEEEEecCCh
Q 039945 183 GFENCRMKLLRHVSFVDCPGH 203 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~ 203 (531)
...+.|.||||.
T Consensus 358 ---------s~~v~LCDCPGL 369 (562)
T KOG1424|consen 358 ---------SPSVCLCDCPGL 369 (562)
T ss_pred ---------CCCceecCCCCc
Confidence 257899999994
No 404
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.73 E-value=7.7e-05 Score=67.84 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=36.6
Q ss_pred eeEEEEecCChhh---HHH-----HHHHhccccCceEEEEeCCCCCCCc--chHHHHHHHHHcCCceEEEEEeccCC
Q 039945 193 RHVSFVDCPGHDI---LMA-----TMLNGAAIMDGALLLIAANESCPQP--QTSEHLAAVEIMRLQHIIILQNKVDL 259 (531)
Q Consensus 193 ~~i~liDtPG~~~---~~~-----~~~~~l~~aD~~llVvDa~~~~~~~--qt~e~l~~~~~~~~~~iIvviNK~Dl 259 (531)
..+.||||||..+ ... .........|.+++++|+... ... ........++. .. ++++||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~-~~~~~~~~~~~~Qi~~---ad-~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHA-NQHLDQQTEAQSQIAF---AD-RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHh-HHHhhccHHHHHHHHH---CC-EEEEecccC
Confidence 5789999999532 222 123345678999999999753 111 11111122222 22 668999996
No 405
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.71 E-value=5.7e-05 Score=74.67 Aligned_cols=99 Identities=23% Similarity=0.315 Sum_probs=56.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCc--CccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQT--VRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~--~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
++++++|+|-||+|||||+|+|+.... .+|+ -.||+...+...+.. . . + ++ -++.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfP-----F~TIdPn~a~V~v~d------~-R--f-d~--------l~~~ 75 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFP-----FCTIDPNEARVEVPD------S-R--F-DL--------LCPI 75 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCC-----cceeccccceeecCc------h-H--H-HH--------HHHh
Confidence 558999999999999999999995432 1111 012222111110000 0 0 0 00 0000
Q ss_pred CCCccccccceeeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCCC
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAANE 228 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~~ 228 (531)
-+. -......+++.|.+|.- -.....+..++.+|.++.||++..
T Consensus 76 Y~~---~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 76 YGP---KSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCC---cceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 000 00012579999999942 345567788899999999999864
No 406
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=7e-05 Score=77.04 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.-.++++|.+|+||||++..|.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999753
No 407
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.64 E-value=4.5e-05 Score=74.56 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
..++++|++|+|||||+|+|++..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 468999999999999999999753
No 408
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.63 E-value=9.3e-05 Score=67.00 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
...+++++|.+|+|||||+|+|.+..
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~ 125 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH 125 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34788999999999999999998753
No 409
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.58 E-value=0.00042 Score=68.52 Aligned_cols=87 Identities=21% Similarity=0.282 Sum_probs=62.9
Q ss_pred cccCceEEEEeCCCCCCCc-chHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccC
Q 039945 215 AIMDGALLLIAANESCPQP-QTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQL 293 (531)
Q Consensus 215 ~~aD~~llVvDa~~~~~~~-qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~ 293 (531)
.+.|-+++|+.+..+.+.. .....|.+++..|+.| |+++||+|+.+.+.... ++...... .-.++++.+|+++
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~p-vIvlnK~DL~~~~~~~~--~~~~~~y~---~~gy~v~~~s~~~ 151 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEP-VIVLNKIDLLDDEEAAV--KELLREYE---DIGYPVLFVSAKN 151 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcE-EEEEEccccCcchHHHH--HHHHHHHH---hCCeeEEEecCcC
Confidence 4578889999888764433 3335667788889887 66799999998665443 23333322 2468999999999
Q ss_pred ccchHHHHHHHHcc
Q 039945 294 KYNIDVVCEYIVKK 307 (531)
Q Consensus 294 g~gi~~L~~~L~~~ 307 (531)
++|+++|.++|...
T Consensus 152 ~~~~~~l~~~l~~~ 165 (301)
T COG1162 152 GDGLEELAELLAGK 165 (301)
T ss_pred cccHHHHHHHhcCC
Confidence 99999999998753
No 410
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.55 E-value=0.00021 Score=74.82 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=39.7
Q ss_pred eeEEEEecCChh----hHHHHHHHh--ccccCceEEEEeCCCCCCCcchHHHHHHHH-HcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHD----ILMATMLNG--AAIMDGALLLIAANESCPQPQTSEHLAAVE-IMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~----~~~~~~~~~--l~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~~~~~iIvviNK~Dl~~ 261 (531)
..+.||||||.. ..+..+... ...+|-++||+|+..|. . ..+.+.... ..+ .--+++||+|...
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq-~--a~~~a~~F~~~~~--~~g~IlTKlD~~a 253 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ-A--AEAQAKAFKDSVD--VGSVIITKLDGHA 253 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh-h--HHHHHHHHHhccC--CcEEEEECccCCC
Confidence 689999999943 333333332 34578999999997651 1 122233332 233 3467899999764
No 411
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00025 Score=72.76 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=40.7
Q ss_pred eeEEEEecCChh----hHHHHHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHD----ILMATMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~----~~~~~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
..+.||||||.. ..+..+...+ ...|.++||+||+.. .....+.+.....+++. =++++|+|...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~~id--glI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDIHID--GIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCCCCC--EEEEEcccCCC
Confidence 579999999953 2344443333 346788999998753 22224444444445554 35699999865
No 412
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.53 E-value=0.00012 Score=69.12 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=40.1
Q ss_pred eeEEEEecCChhh----HHHHHHHh--ccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH
Q 039945 193 RHVSFVDCPGHDI----LMATMLNG--AAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 193 ~~i~liDtPG~~~----~~~~~~~~--l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~ 262 (531)
..+.||||||... .+..+... ....+-++||+|++.+ ...........+.+++.. ++++|+|....
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~~~~--lIlTKlDet~~ 155 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG--QEDLEQALAFYEAFGIDG--LILTKLDETAR 155 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG--GHHHHHHHHHHHHSSTCE--EEEESTTSSST
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC--hHHHHHHHHHhhcccCce--EEEEeecCCCC
Confidence 5799999999432 22222221 2357889999999864 222333445555566654 45999998753
No 413
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.51 E-value=0.00058 Score=61.35 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=36.5
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccC
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVD 258 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~D 258 (531)
...+.||||||... .....+..||.+++|+..... ..........++ .. =++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~--D~y~~~k~~~~~---~~-~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAG--DDIQAIKAGIME---IA-DIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCch--hHHHHhhhhHhh---hc-CEEEEeCCC
Confidence 36899999999653 334577889999999987632 111111112222 12 278899998
No 414
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.50 E-value=8.6e-05 Score=73.31 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
...+++|++|+|||||+|+|.+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCch
Confidence 36799999999999999999864
No 415
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.49 E-value=0.00091 Score=69.80 Aligned_cols=110 Identities=19% Similarity=0.288 Sum_probs=59.3
Q ss_pred eeEEEEecCCh-------------hhHHHHHHHhccccCceEEEE-eCCCCCCCcchHHHHHHHHHcCCceEEEEEeccC
Q 039945 193 RHVSFVDCPGH-------------DILMATMLNGAAIMDGALLLI-AANESCPQPQTSEHLAAVEIMRLQHIIILQNKVD 258 (531)
Q Consensus 193 ~~i~liDtPG~-------------~~~~~~~~~~l~~aD~~llVv-Da~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~D 258 (531)
.+..|+|.||. ++........+.+++++||+| |++-.......-.....+.-.| +..|+|++|+|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~G-rRTIfVLTKVD 490 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHG-RRTIFVLTKVD 490 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCC-CeeEEEEeecc
Confidence 67899999994 233445566778999999987 3332100111112223344455 55899999999
Q ss_pred CccHHHHHHHHHHHHHHHhccc--CCC---CCEEEecccCccchHHHHHHHH
Q 039945 259 LIQENVAINQHEAIMKFIQGTV--ADG---APVVPISAQLKYNIDVVCEYIV 305 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~--~~~---~~ii~iSa~~g~gi~~L~~~L~ 305 (531)
+...+- .....|++.+.+.- ... +.++..-+...+.|+++.++=.
T Consensus 491 lAEknl--A~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~YEE 540 (980)
T KOG0447|consen 491 LAEKNV--ASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREYEE 540 (980)
T ss_pred hhhhcc--CCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHHHH
Confidence 874321 12344555554311 111 1223222333455777666543
No 416
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.47 E-value=0.00032 Score=64.66 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=38.5
Q ss_pred CceEEEEeCCCCCCCcchHHHHHH--HHHcCCceEEEEEeccCCccHHHHHHHHHHHHH
Q 039945 218 DGALLLIAANESCPQPQTSEHLAA--VEIMRLQHIIILQNKVDLIQENVAINQHEAIMK 274 (531)
Q Consensus 218 D~~llVvDa~~~~~~~qt~e~l~~--~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~ 274 (531)
|++++|+|+..+ ......+.... +... .+|+|+|+||+|+++.+......+.+.+
T Consensus 1 DvVl~VvDar~p-~~~~~~~i~~~~~l~~~-~kp~IlVlNK~DL~~~~~l~~~~~~~~~ 57 (172)
T cd04178 1 DVILEVLDARDP-LGCRCPQVEEAVLQAGG-NKKLVLVLNKIDLVPKENVEKWLKYLRR 57 (172)
T ss_pred CEEEEEEECCCC-CCCCCHHHHHHHHhccC-CCCEEEEEehhhcCCHHHHHHHHHHHHh
Confidence 789999999886 45555555555 2223 3679999999999987665555555544
No 417
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.46 E-value=0.0016 Score=66.04 Aligned_cols=98 Identities=13% Similarity=0.139 Sum_probs=57.2
Q ss_pred eeEEEEecCChhhHHHH--------HHHhccccCceEEEEeCCCCCCCcch---HHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHDILMAT--------MLNGAAIMDGALLLIAANESCPQPQT---SEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~--------~~~~l~~aD~~llVvDa~~~~~~~qt---~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
....+|.|-|..+=.+- .+...-..|.++-||||... ..... ......+. ... ++++||+|+++
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~-~~~~~~~~~~~~~Qia---~AD-~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHF-LEGLDAIAELAEDQLA---FAD-VIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHh-hhhHHHHHHHHHHHHH---hCc-EEEEecccCCC
Confidence 56889999995432211 12223445889999999875 22222 11112222 222 77899999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHH
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVC 301 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~ 301 (531)
.+.+....+.++++ ....+++..|. .+....+++
T Consensus 160 ~~~l~~l~~~l~~l-----np~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 160 AEELEALEARLRKL-----NPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred HHHHHHHHHHHHHh-----CCCCeEEEccc-cCCCHHHhh
Confidence 87654444444444 35678888776 334444333
No 418
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.44 E-value=0.0013 Score=54.11 Aligned_cols=65 Identities=20% Similarity=0.122 Sum_probs=42.7
Q ss_pred cCCC-ceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecc----cceeEEecCceEEEe
Q 039945 337 DDIR-GGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQ----NELQFAVPGGLIGVG 405 (531)
Q Consensus 337 ~~~~-G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~----~~v~~a~aG~~v~i~ 405 (531)
+++. |.+.+|||.+|+|+.||.|.+.-.....+.++.. ...+|..|...+ .++++|.|||+|++.
T Consensus 11 ~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~----~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 11 TSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDM----TICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred cCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcE----EEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 4445 5689999999999999999875321111111111 234566665433 478999999999884
No 419
>PRK00098 GTPase RsgA; Reviewed
Probab=97.42 E-value=0.00013 Score=73.61 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
...++++|++|+|||||+|+|+|..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3568999999999999999999864
No 420
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00022 Score=74.60 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=37.5
Q ss_pred eeEEEEecCChhhH----HHHH--HHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHDIL----MATM--LNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~~~----~~~~--~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
..+.||||+|.... .... +......+-.+||+|++.+ .....+.+.....+++. =++++|.|...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~~~--~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHGIH--GCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCCCC--EEEEEeeeCCC
Confidence 67899999994321 1211 1222334567899999854 11222333344445544 35699999864
No 421
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.39 E-value=0.0048 Score=67.82 Aligned_cols=183 Identities=18% Similarity=0.114 Sum_probs=116.4
Q ss_pred EEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEec-cCCccHHHHHHHHHHHHHH
Q 039945 197 FVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK-VDLIQENVAINQHEAIMKF 275 (531)
Q Consensus 197 liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK-~Dl~~~~~~~~~~~~i~~~ 275 (531)
=-|+-|.-+-+...+..+..-+.-+=|+.+.-| +-+...+.++...+ -+|+..|= ++. . +++.
T Consensus 391 kad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG---~i~~~Dv~~a~~~~--a~i~~Fnv~~~~---~--------~~~~ 454 (587)
T TIGR00487 391 KADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVG---GITETDISLASASN--AIIIGFNVRPDA---T--------AKNV 454 (587)
T ss_pred EeCCcchHHHHHHHHHhhcccCCeEEEEEeecC---CCchhhHHHHHhcC--CEEEEEecCCCH---H--------HHHH
Confidence 347777666667777777777777888887654 33555666666554 36777773 321 1 1111
Q ss_pred HhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeecc
Q 039945 276 IQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKV 355 (531)
Q Consensus 276 l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~ 355 (531)
.+ ..+++++.-+-.. .=++++.+++...+++.. ...---...|..+|.+++ .|.+++.+|..|+|+.
T Consensus 455 a~---~~~v~i~~~~iIY-~l~d~~~~~~~~~~~~~~-~~~~~g~a~v~~vf~~~~--------~~~iaG~~V~~G~i~~ 521 (587)
T TIGR00487 455 AE---AENVDIRYYSVIY-KLIDEIRAAMKGMLDPEY-EEEIIGQAEVRQVFNVPK--------IGNIAGCYVTEGVIKR 521 (587)
T ss_pred HH---HcCCeEEEeChHH-HHHHHHHHHHHhccCcce-eeEeeeeEEEEEEEecCC--------CCEEEEEEEecCEEec
Confidence 11 1345555422111 123455555554444321 111122455667786653 5899999999999999
Q ss_pred CCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceee
Q 039945 356 NQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVL 423 (531)
Q Consensus 356 Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl 423 (531)
|..+.+...+ ... ...+|.||++++.+++++..|+-|++.+. +. .++..|+++
T Consensus 522 ~~~~~v~r~~-------~~i---~~g~i~sl~~~k~~v~ev~~g~ecgi~~~---~~--~~~~~gD~i 574 (587)
T TIGR00487 522 GNPLRVIRDG-------VVI---FEGEIDSLKRFKDDVKEVSNGYECGIGIK---NY--NDIKEGDII 574 (587)
T ss_pred CCeEEEEeCC-------EEE---EeccchHhhccCccccEECCCCEEEEEEe---cc--ccCCCCCEE
Confidence 9999987642 211 24689999999999999999999999887 43 678888877
No 422
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.38 E-value=0.00063 Score=62.68 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=39.9
Q ss_pred eeEEEEecCChh----hHHHHHHHh--ccccCceEEEEeCCCCCCCcchHHHH-HHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHD----ILMATMLNG--AAIMDGALLLIAANESCPQPQTSEHL-AAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~----~~~~~~~~~--l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
..+.++||||.. +....+... ....|.+++|+|+..+ ....+.. .+.+..++ .-+++||+|...
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~---~~~~~~~~~~~~~~~~--~~viltk~D~~~ 153 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG---QDAVNQAKAFNEALGI--TGVILTKLDGDA 153 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC---hHHHHHHHHHHhhCCC--CEEEEECCcCCC
Confidence 678999999974 333333222 2348999999998643 2222333 33444553 456789999875
No 423
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.37 E-value=0.00018 Score=68.03 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=47.6
Q ss_pred eeEEEEec-CChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCc
Q 039945 193 RHVSFVDC-PGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLI 260 (531)
Q Consensus 193 ~~i~liDt-PG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~ 260 (531)
..+.++|| +|.+-|.+. .+..+|++|.|+|.+.. .....+..-++...++++++.+|+||+|..
T Consensus 134 ~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYK-SLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhccc---cccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 67889998 466655443 34678999999999864 233344455788889999999999999964
No 424
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.36 E-value=0.00019 Score=71.87 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
..++++|++|+|||||+|+|+|..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 578999999999999999999864
No 425
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.30 E-value=0.0095 Score=67.33 Aligned_cols=182 Identities=19% Similarity=0.151 Sum_probs=119.0
Q ss_pred EecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEec-cCCccHHHHHHHHHHHHHHH
Q 039945 198 VDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK-VDLIQENVAINQHEAIMKFI 276 (531)
Q Consensus 198 iDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK-~Dl~~~~~~~~~~~~i~~~l 276 (531)
-|+-|.-+-+...+..+..-++-+=|+.+.-| +-+...+.++...+ -+|+.+|= .+ .. +.+..
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG---~it~~Dv~la~~~~--a~ii~Fnv~~~---~~--------~~~~a 657 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVG---AITESDVTLAAASN--AIIIGFNVRPD---AK--------ARKLA 657 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccC---CCCHHHHHHHHhcC--CEEEEEcCCCC---HH--------HHHHH
Confidence 47778777777777777777788888887755 33555566666554 36777773 32 11 11111
Q ss_pred hcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccC
Q 039945 277 QGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVN 356 (531)
Q Consensus 277 ~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~G 356 (531)
+ ..++.+..-+-.. .=++++.+++...+++.. ...---...|..+|.+++ .|.|++.+|..|.|+.|
T Consensus 658 ~---~~~v~i~~~~iIY-~l~d~~~~~~~~~l~~~~-~e~~~g~a~v~~vF~~~k--------~~~iaGc~V~~G~i~~~ 724 (787)
T PRK05306 658 E---QEGVDIRYYSIIY-DLIDDVKAAMSGMLEPEY-EEEIIGQAEVREVFKVSK--------VGTIAGCMVTEGKIKRN 724 (787)
T ss_pred H---HcCCEEEEeChHH-HHHHHHHHHHhhccCchh-heeeeeeEEEEEEEecCC--------CCeEEEEEEeeCEEecC
Confidence 1 1344554432211 224555556655554321 111122566778887754 68999999999999999
Q ss_pred CEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceee
Q 039945 357 QFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVL 423 (531)
Q Consensus 357 d~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl 423 (531)
..+.+.-. |.+. ...+|.||.++..++.++..|+-|++.+. +. .++..|++|
T Consensus 725 ~~~rv~R~-------~~~i---~~g~i~slk~~k~~v~ev~~g~ecgi~~~---~~--~d~~~gD~i 776 (787)
T PRK05306 725 AKVRVLRD-------GVVI---YEGELESLKRFKDDVKEVRAGYECGIGLE---NY--NDIKEGDII 776 (787)
T ss_pred CeEEEEeC-------CEEE---EEeEEehhcccCcCccEeCCCCEEEEEee---cc--ccCCCCCEE
Confidence 99998753 3322 24689999999999999999999999886 43 578889887
No 426
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.00056 Score=70.02 Aligned_cols=65 Identities=9% Similarity=0.071 Sum_probs=37.0
Q ss_pred eeEEEEecCChh----hHHHHHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHD----ILMATMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~----~~~~~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
..+.||||||.. +.+..+.... ..+|.++||+++... ..+..+.+.....+++. -+++||+|...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~l~i~--glI~TKLDET~ 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAEIPID--GFIITKMDETT 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCcCCCC--EEEEEcccCCC
Confidence 689999999962 3333333322 345777888887432 11222222223333433 56699999864
No 427
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.24 E-value=0.00054 Score=67.33 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=22.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
....++.++|-||+|||||+|++.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r 164 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALR 164 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHH
Confidence 466899999999999999999986
No 428
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.23 E-value=0.00086 Score=62.23 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=41.5
Q ss_pred eeEEEEecCChhh--HH---HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHH-H
Q 039945 193 RHVSFVDCPGHDI--LM---ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVA-I 266 (531)
Q Consensus 193 ~~i~liDtPG~~~--~~---~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~-~ 266 (531)
..+.||.+.|..+ .+ .......-..+.++.|+|+... ....... ..+...+..-. ++++||+|+++.++. +
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~-~~~~~~~-~~~~~Qi~~AD-vIvlnK~D~~~~~~~i~ 161 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNF-DELENIP-ELLREQIAFAD-VIVLNKIDLVSDEQKIE 161 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTH-GGHTTHC-HHHHHHHCT-S-EEEEE-GGGHHHH--HH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccc-cccccch-hhhhhcchhcC-EEEEeccccCChhhHHH
Confidence 4688999999432 12 1222233556899999999652 1111111 12233333333 778999999987632 3
Q ss_pred HHHHHHHH
Q 039945 267 NQHEAIMK 274 (531)
Q Consensus 267 ~~~~~i~~ 274 (531)
...+.+++
T Consensus 162 ~~~~~ir~ 169 (178)
T PF02492_consen 162 RVREMIRE 169 (178)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44344443
No 429
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.22 E-value=0.0003 Score=71.07 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
+..++++|+|.||+||||+||+|...
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~ 275 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRR 275 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHh
Confidence 56799999999999999999999754
No 430
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.20 E-value=0.0024 Score=64.71 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=56.3
Q ss_pred EEEecCChh-hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHHcCCceEEEEEeccCCccHHHHHHHHHHHH
Q 039945 196 SFVDCPGHD-ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEIMRLQHIIILQNKVDLIQENVAINQHEAIM 273 (531)
Q Consensus 196 ~liDtPG~~-~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~ 273 (531)
.-.|-+++. .|.+....-+..+|++|.|+||.++ ......+.-. ++..-|.+++|+|+||+|++..+.++++...++
T Consensus 125 ~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDP-lgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr 203 (435)
T KOG2484|consen 125 NALDNEESKKAYDKEFRKVVEASDVVLEVLDARDP-LGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLR 203 (435)
T ss_pred hhccchhhHHHHHHHHHHHHhhhheEEEeeeccCC-CCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHH
Confidence 445556654 6888888889999999999999986 3332333332 333456688999999999999877666666665
Q ss_pred HH
Q 039945 274 KF 275 (531)
Q Consensus 274 ~~ 275 (531)
..
T Consensus 204 ~~ 205 (435)
T KOG2484|consen 204 RE 205 (435)
T ss_pred hh
Confidence 43
No 431
>PRK10867 signal recognition particle protein; Provisional
Probab=97.19 E-value=0.0013 Score=69.32 Aligned_cols=64 Identities=23% Similarity=0.217 Sum_probs=36.8
Q ss_pred eeEEEEecCChh----hHHHHHHH--hccccCceEEEEeCCCCCCCcchHHHHHHHH-HcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHD----ILMATMLN--GAAIMDGALLLIAANESCPQPQTSEHLAAVE-IMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~----~~~~~~~~--~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~~~~~iIvviNK~Dl~~ 261 (531)
+.+.||||||.. ..+..+.. .+..+|-++||+|+..+ ....+...... .+++ .-+++||+|...
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~~i--~giIlTKlD~~~ 254 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEALGL--TGVILTKLDGDA 254 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhCCC--CEEEEeCccCcc
Confidence 679999999932 33332222 22367888999998643 11222222222 3333 346789999643
No 432
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.001 Score=70.88 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..-.|+|+|.+|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999874
No 433
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.14 E-value=0.014 Score=65.34 Aligned_cols=184 Identities=14% Similarity=0.058 Sum_probs=117.9
Q ss_pred EEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHH
Q 039945 196 SFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKF 275 (531)
Q Consensus 196 ~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~ 275 (531)
.=-|+-|--+-+...+..+....+-+=|+.+.-| +-+...+.++...+ -+|+.+|=- ++.. +.+.
T Consensus 547 iKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG---~it~~Dv~lA~~~~--a~ii~Fnv~--~~~~--------~~~~ 611 (742)
T CHL00189 547 IKTDTQGSIEAIINSISQIPQKKVQLNILYASLG---EVTETDVEFASTTN--AEILAFNTN--LAPG--------AKKA 611 (742)
T ss_pred EEeCCcchHHHHHHHHHhcCCCcEEEEEEEeecC---CCCHHHHHHHHhcC--CEEEEeeCC--CCHH--------HHHH
Confidence 3357888777777777777666677778877654 33556666666665 257777631 1111 1111
Q ss_pred HhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeecc
Q 039945 276 IQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKV 355 (531)
Q Consensus 276 l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~ 355 (531)
.+ ..++.++.-+-.. .=++++.+++...+++ .....-.-+..|..+|.+. .|.|++.+|..|+|+.
T Consensus 612 a~---~~~v~i~~~~iIY-~lid~~~~~~~~~l~~-~~~~~~~g~a~v~~vF~~~---------k~~iaGc~V~~G~i~~ 677 (742)
T CHL00189 612 AR---KLNIIIKEYQVIY-DLLEYIEALMEDLLDP-EYKKVPIGEAEVKTVFPLA---------KRFVAGCRVTEGKITK 677 (742)
T ss_pred HH---HcCCEEEEeChHH-HHHHHHHHHHhhccCc-eeeeeeceeEEeeEEEecC---------CCEEEEEEEecCEEec
Confidence 11 1344554422111 2245555556555543 2222233356677888764 3789999999999999
Q ss_pred CCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceee
Q 039945 356 NQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVL 423 (531)
Q Consensus 356 Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl 423 (531)
|..+.++-.+ ... ...+|.||.++..++.++..|+-||+.+. + ..++..|+++
T Consensus 678 ~~~~rv~R~~-------~~i---~~G~i~slk~~k~~v~ev~~g~ecgi~i~---~--~~d~~~gD~i 730 (742)
T CHL00189 678 NALIKVIREN-------KLI---YEGKITSLKRVKEDVEEAQEGNECGIFIE---E--FQLWQSGDKI 730 (742)
T ss_pred CCeEEEEeCC-------eEE---EEeEEhhHhhcCccccEeCCCCEEEEEee---C--CCCCCcCCEE
Confidence 9999987642 211 25789999999999999999999999876 3 3578888877
No 434
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.14 E-value=0.005 Score=56.65 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=46.8
Q ss_pred eEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 194 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 194 ~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
.+.+||||+.... .....+..+|.+|++++++.. ........+..++..+.+...+++|++|...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 7999999985432 345567889999999998765 3334445556666666666789999998653
No 435
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.14 E-value=0.0026 Score=52.35 Aligned_cols=53 Identities=26% Similarity=0.414 Sum_probs=46.4
Q ss_pred cCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecc-cceeEEecCceEEE
Q 039945 337 DDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQ-NELQFAVPGGLIGV 404 (531)
Q Consensus 337 ~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~-~~v~~a~aG~~v~i 404 (531)
+..+|.+++..|.+|+|++||.++.+.. +.+|++|...+ .++++|.||+.|.|
T Consensus 11 ~~g~G~vatviV~~GtL~~Gd~iv~G~~---------------~gkVr~l~d~~g~~v~~a~Ps~~V~I 64 (95)
T cd03702 11 DKGRGPVATVLVQNGTLKVGDVLVAGTT---------------YGKVRAMFDENGKRVKEAGPSTPVEI 64 (95)
T ss_pred cCCCCccEEEEEEcCeEeCCCEEEEccc---------------ccEEEEEECCCCCCCCEECCCCcEEE
Confidence 4458999999999999999999998753 57999998875 58999999999987
No 436
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=97.10 E-value=0.0042 Score=51.01 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=42.5
Q ss_pred CCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecc----cceeEEecCceEEEe
Q 039945 339 IRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQ----NELQFAVPGGLIGVG 405 (531)
Q Consensus 339 ~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~----~~v~~a~aG~~v~i~ 405 (531)
+.|.+.++||.+|+|+.||.+.+.......+..+.. ...+|..|...+ .++++|.|||+|++.
T Consensus 14 ~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~----~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 14 KGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDL----SKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcE----EEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 578999999999999999999865421110000111 234565665432 478999999999984
No 437
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.09 E-value=0.01 Score=60.85 Aligned_cols=102 Identities=11% Similarity=0.164 Sum_probs=54.3
Q ss_pred eeEEEEecCChhhHHHHH--H-----HhccccCceEEEEeCCCCCCCcc--------------------hHHHH-HHHHH
Q 039945 193 RHVSFVDCPGHDILMATM--L-----NGAAIMDGALLLIAANESCPQPQ--------------------TSEHL-AAVEI 244 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~--~-----~~l~~aD~~llVvDa~~~~~~~q--------------------t~e~l-~~~~~ 244 (531)
....+|.|.|..+....+ . ...-..|.++.|||+... .... ..... .+...
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q 171 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAV-AAGRFAADPDALDAQRAADDNLDHETPLEELFEDQ 171 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchh-hhhccccchhhhhhhccccccccccchHHHHHHHH
Confidence 568899999965432222 1 112356889999999743 1100 00000 11122
Q ss_pred cCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHH
Q 039945 245 MRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVC 301 (531)
Q Consensus 245 ~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~ 301 (531)
+.... +|++||+|+++.+.+....+.+++.. ....+++..+ ........|+
T Consensus 172 i~~AD-~IvlnK~Dl~~~~~l~~~~~~l~~~~----~~~a~i~~~~-~~~v~~~~ll 222 (341)
T TIGR02475 172 LACAD-LVILNKADLLDAAGLARVRAEIAAEL----PRAVKIVEAS-HGEVDARVLL 222 (341)
T ss_pred HHhCC-EEEEeccccCCHHHHHHHHHHHHHhC----CCCCEEEEcc-cCCCCHHHHh
Confidence 22222 77899999999877666665665542 2233566543 2223444443
No 438
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.08 E-value=0.00065 Score=69.69 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=40.3
Q ss_pred eeeEEEEecCChhh----HHHHHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 192 LRHVSFVDCPGHDI----LMATMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 192 ~~~i~liDtPG~~~----~~~~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
++.+.||||.|+.. .+..+...+ ....-..||++++.. .....+.+.....+++.. ++++|+|...
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i~~--~I~TKlDET~ 352 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFPIDG--LIFTKLDETT 352 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCCcce--eEEEcccccC
Confidence 36899999999642 233333332 233456778888753 233445555555566654 4589999875
No 439
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.07 E-value=0.001 Score=70.20 Aligned_cols=64 Identities=27% Similarity=0.271 Sum_probs=38.4
Q ss_pred eeEEEEecCChhh----HHHHH--HHhccccCceEEEEeCCCCCCCcchHHHHHHHH-HcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHDI----LMATM--LNGAAIMDGALLLIAANESCPQPQTSEHLAAVE-IMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~~----~~~~~--~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~~~~~iIvviNK~Dl~~ 261 (531)
..+.||||||... .+.++ +..+..+|.+++|+|++.+ ....+...... .++ ..-+++||+|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g---q~av~~a~~F~~~l~--i~gvIlTKlD~~a 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG---QQAKNQAKAFHEAVG--IGGIIITKLDGTA 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc---HHHHHHHHHHHhcCC--CCEEEEecccCCC
Confidence 4799999999432 22222 2334578999999999764 12222222221 222 2356789999753
No 440
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.0014 Score=73.00 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.-.|+++|..|+||||++..|.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 3468999999999999999998653
No 441
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.01 E-value=0.0023 Score=67.39 Aligned_cols=63 Identities=22% Similarity=0.211 Sum_probs=37.4
Q ss_pred eeEEEEecCChh----hHHHHH--HHhccccCceEEEEeCCCCCCCcchHHHHHHH-HHcCCceEEEEEeccCCc
Q 039945 193 RHVSFVDCPGHD----ILMATM--LNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EIMRLQHIIILQNKVDLI 260 (531)
Q Consensus 193 ~~i~liDtPG~~----~~~~~~--~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~~~~~~iIvviNK~Dl~ 260 (531)
+.+.|+||||.. ..+..+ +.....+|-++||+|+..+ ....+..... ..+++. =+++||+|..
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~i~--giIlTKlD~~ 252 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLGLT--GVVLTKLDGD 252 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCCCC--EEEEeCccCc
Confidence 579999999942 223222 1223457889999998743 1223333322 234543 4569999964
No 442
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.98 E-value=0.0046 Score=54.86 Aligned_cols=78 Identities=6% Similarity=0.088 Sum_probs=48.5
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHH-HcCCceEEEEEeccCCccHHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVE-IMRLQHIIILQNKVDLIQENVAINQHEA 271 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~~~~~iIvviNK~Dl~~~~~~~~~~~~ 271 (531)
+.+.++|||+... ......+..+|.+++|++.+.. ....+...+..+. ..+..++.+++|+++... ..++..+.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~-s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~--~~~~~~~~ 119 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPT-SITDAYALIKKLAKQLRVLNFRVVVNRAESPK--EGKKVFKR 119 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChh-HHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHH--HHHHHHHH
Confidence 5789999998532 2345667889999999998754 2223344444443 233456789999997432 23344444
Q ss_pred HHHH
Q 039945 272 IMKF 275 (531)
Q Consensus 272 i~~~ 275 (531)
+.+.
T Consensus 120 ~~~~ 123 (139)
T cd02038 120 LSNV 123 (139)
T ss_pred HHHH
Confidence 4443
No 443
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.97 E-value=0.015 Score=59.86 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccC--ccchHHHHHHHHccCCC
Q 039945 237 EHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQL--KYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 237 e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~--g~gi~~L~~~L~~~l~~ 310 (531)
..+..++.+| +|+|+++|=.+=... +..+..+++.+. -++|++|+++.+ .+.|..+++.+.--+|.
T Consensus 171 rvI~ELk~ig-KPFvillNs~~P~s~-et~~L~~eL~ek------Y~vpVlpvnc~~l~~~DI~~Il~~vLyEFPV 238 (492)
T PF09547_consen 171 RVIEELKEIG-KPFVILLNSTKPYSE-ETQELAEELEEK------YDVPVLPVNCEQLREEDITRILEEVLYEFPV 238 (492)
T ss_pred HHHHHHHHhC-CCEEEEEeCCCCCCH-HHHHHHHHHHHH------hCCcEEEeehHHcCHHHHHHHHHHHHhcCCc
Confidence 3446677788 679999998875443 334455555553 368999998765 45666777666545554
No 444
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.97 E-value=0.0014 Score=69.62 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
-.++++|..|+||||++..|.+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999999854
No 445
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.97 E-value=0.0019 Score=68.27 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=37.6
Q ss_pred eeEEEEecCChhh----HHHHHHHhcc---ccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHDI----LMATMLNGAA---IMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~~----~~~~~~~~l~---~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
..+.||||||... ....+...+. ..+-+.+|++++.+ .....+.+.....+++. =+++||+|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~~~~--~vI~TKlDet~ 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRLPLD--GLIFTKLDETS 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCCCCC--EEEEecccccc
Confidence 6899999999532 2222222222 34567889998754 22223333444444432 46799999854
No 446
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.94 E-value=0.0018 Score=64.01 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=40.5
Q ss_pred eeEEEEecCChh----hHHHHHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHD----ILMATMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~----~~~~~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
..+.||||||.. ..+..+...+ ...|.++||+||+.. ..+..+.+......++. =++++|.|...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~~~~--~~I~TKlDet~ 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDIHID--GIVFTKFDETA 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCCCCC--EEEEEeecCCC
Confidence 689999999943 3344443332 456789999999753 22233444444444444 45699999865
No 447
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.039 Score=58.38 Aligned_cols=104 Identities=19% Similarity=0.179 Sum_probs=74.4
Q ss_pred chHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCcee
Q 039945 296 NIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIK 375 (531)
Q Consensus 296 gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~ 375 (531)
.++++..++...+.+..+. .---...+-..|.+++ .|.++...|..|+++.|..+.+.- +|...
T Consensus 392 lied~~~~~~g~l~p~~~e-~~~g~~~~r~v~~~~k--------~g~IaG~~V~~G~ikr~~~v~~~r-------d~~vi 455 (509)
T COG0532 392 LIEDVEAAMKGMLEPEKKE-RVIGLAEVRAVFKLPK--------VGAIAGCMVTEGVIKRGAPVRVVR-------DGVVI 455 (509)
T ss_pred HHHHHHHHHHhccchhhhh-hcccceEEEEEEEcCC--------CCeEEEEEEecCEEecCCcEEEEe-------CCeEE
Confidence 4567777777666532221 1112344555566654 789999999999999999999762 12211
Q ss_pred eccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceee
Q 039945 376 CTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVL 423 (531)
Q Consensus 376 ~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl 423 (531)
...+|.||++++.++.++.+|+-|++.+. + ..++..|++|
T Consensus 456 ---~~G~i~sLk~~kddv~ev~~G~ecgI~i~---~--~~di~~gD~l 495 (509)
T COG0532 456 ---YEGEVESLKRFKDDVKEVRKGQECGIAIE---N--YRDIKEGDIL 495 (509)
T ss_pred ---EeeEEEeeeccCccHhHhccCcEEEEEec---C--cccCCCCCEE
Confidence 24789999999999999999999999887 3 4567777776
No 448
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.85 E-value=0.012 Score=59.84 Aligned_cols=88 Identities=18% Similarity=0.224 Sum_probs=46.2
Q ss_pred eeEEEEecCChhhHHHHH--------HHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHH
Q 039945 193 RHVSFVDCPGHDILMATM--------LNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENV 264 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~--------~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~ 264 (531)
....+|.|-|..+-...+ ....-..|.++.|||+.... .. ...+-.....+.... +|++||+|+.+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~-~~-~~~~~~~~~Qi~~AD-~IvlnK~Dl~~~~- 166 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHAD-EQ-MNQFTIAQSQVGYAD-RILLTKTDVAGEA- 166 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhh-hh-ccccHHHHHHHHhCC-EEEEeccccCCHH-
Confidence 457899999965422111 11223458999999997641 11 111111112222222 7789999998743
Q ss_pred HHHHHHHHHHHHhcccCCCCCEEEec
Q 039945 265 AINQHEAIMKFIQGTVADGAPVVPIS 290 (531)
Q Consensus 265 ~~~~~~~i~~~l~~~~~~~~~ii~iS 290 (531)
+. +.+.++.. ....+++..+
T Consensus 167 -~~----~~~~l~~l-np~a~i~~~~ 186 (318)
T PRK11537 167 -EK----LRERLARI-NARAPVYTVV 186 (318)
T ss_pred -HH----HHHHHHHh-CCCCEEEEec
Confidence 23 33333332 2456676543
No 449
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.82 E-value=0.0035 Score=45.91 Aligned_cols=49 Identities=22% Similarity=0.438 Sum_probs=26.9
Q ss_pred HHHHhc-cccCceEEEEeCCCCCCCcchHHHH----HHHHHcCCceEEEEEeccC
Q 039945 209 TMLNGA-AIMDGALLLIAANESCPQPQTSEHL----AAVEIMRLQHIIILQNKVD 258 (531)
Q Consensus 209 ~~~~~l-~~aD~~llVvDa~~~~~~~qt~e~l----~~~~~~~~~~iIvviNK~D 258 (531)
.++.++ ..++.+++++|.++.+ .....+.+ ++-..++.+|+++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~C-Gysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQC-GYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TT-SS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCC-CCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 445555 5578999999999753 21122222 3344455688999999998
No 450
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.0012 Score=68.78 Aligned_cols=65 Identities=22% Similarity=0.198 Sum_probs=39.3
Q ss_pred eeEEEEecCChh----hHHHHHHHhcc-----ccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHD----ILMATMLNGAA-----IMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~----~~~~~~~~~l~-----~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
..+.||||||.. ..+..+...+. ...-.+||+||+.+ ..+..+.+.....+++. =++++|+|...
T Consensus 300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~~~~~--glIlTKLDEt~ 373 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESLNYR--RILLTKLDEAD 373 (432)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcCCCCC--EEEEEcccCCC
Confidence 678999999953 22233322221 23468899999865 22333444444555554 35699999864
No 451
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=0.0068 Score=58.54 Aligned_cols=135 Identities=17% Similarity=0.180 Sum_probs=74.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCcc--ccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRF--KNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCD 180 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~--~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 180 (531)
.-..||..+|.+|-|||||++.|.+...... .|.. .++.. .+.||.- .+..
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~-~~V~L------------------~~~Tyel------qEsn-- 92 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTL-PNVKL------------------QANTYEL------QESN-- 92 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCC-CCcee------------------ecchhhh------hhcC--
Confidence 4458999999999999999999986542110 0100 00100 0111110 0000
Q ss_pred CCCCccccccceeeEEEEecCChh-------------hHHH--------------HHHHhc--cccCceEEEEeCCCCCC
Q 039945 181 VPGFENCRMKLLRHVSFVDCPGHD-------------ILMA--------------TMLNGA--AIMDGALLLIAANESCP 231 (531)
Q Consensus 181 ~~g~~~~~~~~~~~i~liDtPG~~-------------~~~~--------------~~~~~l--~~aD~~llVvDa~~~~~ 231 (531)
....++++||.|.. +|+. .++... ...+++|+.|..+...+
T Consensus 93 ----------vrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~L 162 (406)
T KOG3859|consen 93 ----------VRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSL 162 (406)
T ss_pred ----------eeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcch
Confidence 01579999999942 2221 122222 45678999998775422
Q ss_pred CcchHHHHHHHHHcC-CceEEEEEeccCCccHHHHHHHHHHHHHHHh
Q 039945 232 QPQTSEHLAAVEIMR-LQHIIILQNKVDLIQENVAINQHEAIMKFIQ 277 (531)
Q Consensus 232 ~~qt~e~l~~~~~~~-~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~ 277 (531)
...+ . ..++.+. .-.+|-++-|.|....+++......|...|.
T Consensus 163 KslD--L-vtmk~LdskVNIIPvIAKaDtisK~eL~~FK~kimsEL~ 206 (406)
T KOG3859|consen 163 KSLD--L-VTMKKLDSKVNIIPVIAKADTISKEELKRFKIKIMSELV 206 (406)
T ss_pred hHHH--H-HHHHHHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2211 1 1222222 1236778899999988887776666665554
No 452
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.69 E-value=0.0091 Score=49.20 Aligned_cols=53 Identities=28% Similarity=0.338 Sum_probs=45.2
Q ss_pred cCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecc-cceeEEecCceEEE
Q 039945 337 DDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQ-NELQFAVPGGLIGV 404 (531)
Q Consensus 337 ~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~-~~v~~a~aG~~v~i 404 (531)
+..+|.+++..|.+|+|++||.++.+.. +.+|+.+...+ +.+.+|.|++.|.+
T Consensus 11 ~~g~G~vatviV~~GtL~~Gd~iv~G~~---------------~GkVr~~~d~~g~~v~~a~Ps~~v~i 64 (95)
T cd03701 11 DKGRGPVATVIVQNGTLKKGDVIVAGGT---------------YGKIRTMVDENGKALLEAGPSTPVEI 64 (95)
T ss_pred cCCCCeeEEEEEEcCeEecCCEEEECCc---------------cceEEEEECCCCCCccccCCCCCEEE
Confidence 4558999999999999999999997653 57899998865 57999999998855
No 453
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.0048 Score=64.16 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=38.3
Q ss_pred eeeEEEEecCChh--h--HHHHHHHhccc--cC-ceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 192 LRHVSFVDCPGHD--I--LMATMLNGAAI--MD-GALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 192 ~~~i~liDtPG~~--~--~~~~~~~~l~~--aD-~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
...+.||||||.. + .+..+...+.. .+ -.+||+||+.+ .....+.+.....++.. =++++|.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~~~~--~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPFSYK--TVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCCCCC--EEEEEeccCCC
Confidence 3689999999942 2 22333333322 23 58999999865 22222333333334444 45699999864
No 454
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.65 E-value=0.0066 Score=51.14 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=42.2
Q ss_pred eEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc---eEEEEEec
Q 039945 194 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ---HIIILQNK 256 (531)
Q Consensus 194 ~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~---~iIvviNK 256 (531)
.+.++|||+.... .....+..+|.++++++.+.. ........+..++..+.+ ++.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLP-SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChH-HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6899999996432 344566889999999998764 334455566666666643 57788885
No 455
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.62 E-value=0.0091 Score=60.79 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=66.7
Q ss_pred EEEEecCChh-hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHH
Q 039945 195 VSFVDCPGHD-ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIM 273 (531)
Q Consensus 195 i~liDtPG~~-~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~ 273 (531)
..+-+-|||. ++.+....-+..+|+++.|+||..+ ..........+.. .++.++|+||+|+.+....+++.+.+.
T Consensus 12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P-~~s~~~~l~~~v~---~k~~i~vlNK~DL~~~~~~~~W~~~~~ 87 (322)
T COG1161 12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDP-LGTRNPELERIVK---EKPKLLVLNKADLAPKEVTKKWKKYFK 87 (322)
T ss_pred ccccCCCCchHHHHHHHHHhcccCCEEEEEEecccc-ccccCccHHHHHc---cCCcEEEEehhhcCCHHHHHHHHHHHH
Confidence 3455669986 5667777788999999999999886 4444444334433 345599999999998765444333332
Q ss_pred HHHhcccCCCCCEEEecccCccchHHHHH
Q 039945 274 KFIQGTVADGAPVVPISAQLKYNIDVVCE 302 (531)
Q Consensus 274 ~~l~~~~~~~~~ii~iSa~~g~gi~~L~~ 302 (531)
+. .....+.+|++.+.+...+..
T Consensus 88 ~~------~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 88 KE------EGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred hc------CCCccEEEEeecccCccchHH
Confidence 21 245678889998888776664
No 456
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.60 E-value=0.019 Score=48.18 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=46.0
Q ss_pred cCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeeccc-----------ceeEEecCceEEEe
Q 039945 337 DDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQN-----------ELQFAVPGGLIGVG 405 (531)
Q Consensus 337 ~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~-----------~v~~a~aG~~v~i~ 405 (531)
+++.|+++...|.+|+|++||.+.++.. ..|+.++|++|...+. ++++|.|..-+-+.
T Consensus 11 ~~G~G~t~dvIl~~GtL~~GD~Iv~g~~-----------~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~ 79 (110)
T cd03703 11 EEGLGTTIDVILYDGTLREGDTIVVCGL-----------NGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKIL 79 (110)
T ss_pred cCCCceEEEEEEECCeEecCCEEEEccC-----------CCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEE
Confidence 4558999999999999999999998764 2356789999988765 78888866555543
No 457
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.55 E-value=0.0096 Score=62.37 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=56.2
Q ss_pred hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC-CceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCC
Q 039945 205 ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR-LQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADG 283 (531)
Q Consensus 205 ~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~-~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 283 (531)
++-++..+.+..+|++|.+|||..+ ........-.+..... .+..++++||.||..+.......+.+. ..+
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnP-llfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~-------~~n 234 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNP-LLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFR-------QNN 234 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCc-cccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHH-------hcC
Confidence 4566778888999999999999987 3333333333444333 366899999999998765444333332 246
Q ss_pred CCEEEecccC
Q 039945 284 APVVPISAQL 293 (531)
Q Consensus 284 ~~ii~iSa~~ 293 (531)
+++++.||.-
T Consensus 235 i~~vf~SA~~ 244 (562)
T KOG1424|consen 235 IPVVFFSALA 244 (562)
T ss_pred ceEEEEeccc
Confidence 8999999987
No 458
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.49 E-value=0.0083 Score=61.92 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=40.4
Q ss_pred eeEEEEecCCh----hhHHHHH--HHhccccCceEEEEeCCCCCCCcchHH-HH-HHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGH----DILMATM--LNGAAIMDGALLLIAANESCPQPQTSE-HL-AAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~----~~~~~~~--~~~l~~aD~~llVvDa~~~~~~~qt~e-~l-~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
..+.|+||+|- ++.+.++ +...-.+|=+|||+||..| |... .. .+-+.+++. =|+++|+|-..
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G----QdA~~~A~aF~e~l~it--GvIlTKlDGda 253 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG----QDAVNTAKAFNEALGIT--GVILTKLDGDA 253 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc----hHHHHHHHHHhhhcCCc--eEEEEcccCCC
Confidence 58999999992 3444443 3455788999999999765 2222 12 222334443 46799999653
No 459
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.34 E-value=0.013 Score=54.11 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=48.2
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
.+.+.++|||+... ......+..+|.+++++..+.. ........+..++..+.+ +.+|+||+|...
T Consensus 92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~~~~-~~vV~N~~~~~~ 157 (179)
T cd03110 92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHFGIP-VGVVINKYDLND 157 (179)
T ss_pred CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHcCCC-EEEEEeCCCCCc
Confidence 37899999996432 2345567889999999998764 334455666777777755 789999999754
No 460
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.14 Score=45.95 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH
Q 039945 104 ATINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
..++|++.|.||+|||||+..+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHH
Confidence 34899999999999999999886
No 461
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.30 E-value=0.009 Score=71.21 Aligned_cols=68 Identities=13% Similarity=0.263 Sum_probs=39.9
Q ss_pred eeEEEEecCCh----h-----------hHHHHHHHh--ccccCceEEEEeCCCCCCCc--c--------hHHHH-HHHHH
Q 039945 193 RHVSFVDCPGH----D-----------ILMATMLNG--AAIMDGALLLIAANESCPQP--Q--------TSEHL-AAVEI 244 (531)
Q Consensus 193 ~~i~liDtPG~----~-----------~~~~~~~~~--l~~aD~~llVvDa~~~~~~~--q--------t~e~l-~~~~~ 244 (531)
..-.+|||+|. + .|.....+. -+-.|++|++||+.+- ... + .+..+ ++...
T Consensus 161 ~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~L-l~~~~~~~~~~a~~lR~rl~el~~~ 239 (1169)
T TIGR03348 161 DEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADL-LTADPAERKAHARAIRQRLQELREQ 239 (1169)
T ss_pred CCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHH-hCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999992 1 122222111 2457999999999752 211 1 11111 23344
Q ss_pred cCC-ceEEEEEeccCCcc
Q 039945 245 MRL-QHIIILQNKVDLIQ 261 (531)
Q Consensus 245 ~~~-~~iIvviNK~Dl~~ 261 (531)
+|+ -|+-|++||||+..
T Consensus 240 lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 240 LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred hCCCCCEEEEEecchhhc
Confidence 553 46999999999873
No 462
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.22 E-value=0.023 Score=60.49 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=82.3
Q ss_pred ccCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCC
Q 039945 101 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCD 180 (531)
Q Consensus 101 ~~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 180 (531)
..++..+.-++|..++|||.|+++++|...++ .. .+ +.+..|+ . ..+.
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~---~~-~~~~~~a----------------------v-----n~v~ 468 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NN---TG-TTKPRYA----------------------V-----NSVE 468 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhcccccc-cc---cc-CCCCcee----------------------e-----eeee
Confidence 34666788899999999999999999865432 00 00 0111110 0 0001
Q ss_pred CCCCccccccceeeEEEEecCChh-hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCC
Q 039945 181 VPGFENCRMKLLRHVSFVDCPGHD-ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDL 259 (531)
Q Consensus 181 ~~g~~~~~~~~~~~i~liDtPG~~-~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl 259 (531)
..| ..+.+.|-|.+-.. ++..+ .=..||++++++|.+.......-.+..........-|++.|..|+|+
T Consensus 469 ~~g-------~~k~LiL~ei~~~~~~~l~~---ke~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dl 538 (625)
T KOG1707|consen 469 VKG-------QQKYLILREIGEDDQDFLTS---KEAACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADL 538 (625)
T ss_pred ecc-------ccceEEEeecCccccccccC---ccceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeecccc
Confidence 111 11445555554321 11111 11679999999999854211222233333333344679999999998
Q ss_pred ccHHH-HHHHHHHHHHHHhcccCCCCCEEEecccC-ccchHHHHHHHHcc
Q 039945 260 IQENV-AINQHEAIMKFIQGTVADGAPVVPISAQL-KYNIDVVCEYIVKK 307 (531)
Q Consensus 260 ~~~~~-~~~~~~~i~~~l~~~~~~~~~ii~iSa~~-g~gi~~L~~~L~~~ 307 (531)
....+ ......++...+ ...+-+.+|.+. +. .+|+..|...
T Consensus 539 De~~Q~~~iqpde~~~~~-----~i~~P~~~S~~~~~s--~~lf~kL~~~ 581 (625)
T KOG1707|consen 539 DEVPQRYSIQPDEFCRQL-----GLPPPIHISSKTLSS--NELFIKLATM 581 (625)
T ss_pred chhhhccCCChHHHHHhc-----CCCCCeeeccCCCCC--chHHHHHHHh
Confidence 64321 111112222221 233456677774 33 6777777643
No 463
>PRK13695 putative NTPase; Provisional
Probab=96.17 E-value=0.094 Score=48.23 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=48.7
Q ss_pred EecCChhhHHHHH-HHhccccCceEEEEe---CCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHH
Q 039945 198 VDCPGHDILMATM-LNGAAIMDGALLLIA---ANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIM 273 (531)
Q Consensus 198 iDtPG~~~~~~~~-~~~l~~aD~~llVvD---a~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~ 273 (531)
.|.-|.+.+.... ...+..+|+ +++| ..+. ...+..+.+..+...+ .++|+++||.... ...+++.
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~--lllDE~~~~e~-~~~~~~~~l~~~~~~~-~~~i~v~h~~~~~------~~~~~i~ 146 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADV--IIIDEIGKMEL-KSPKFVKAVEEVLDSE-KPVIATLHRRSVH------PFVQEIK 146 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCE--EEEECCCcchh-hhHHHHHHHHHHHhCC-CeEEEEECchhhH------HHHHHHh
Confidence 3444555444333 334466776 6889 3333 3344455554444555 5799999985321 1222232
Q ss_pred HHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 274 KFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 274 ~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
. .....++.+ +-+|-++|...+.+.
T Consensus 147 ~------~~~~~i~~~---~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 147 S------RPGGRVYEL---TPENRDSLPFEILNR 171 (174)
T ss_pred c------cCCcEEEEE---cchhhhhHHHHHHHH
Confidence 2 234455555 556677777776643
No 464
>PRK01889 GTPase RsgA; Reviewed
Probab=96.10 E-value=0.0052 Score=63.48 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
+...++++|.+|+|||||+|+|+|..
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHhc
Confidence 34579999999999999999999864
No 465
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.09 E-value=0.022 Score=58.46 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=48.6
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC---C----CcchHHHHHHHHH------cCCceEEEEEeccC
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC---P----QPQTSEHLAAVEI------MRLQHIIILQNKVD 258 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~---~----~~qt~e~l~~~~~------~~~~~iIvviNK~D 258 (531)
...+.++|..|.+.+.+.+......++++++|+|.++-. . .....+.+.+++. +...|+++++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 467899999999888888888889999999999998621 0 0111122222221 23357999999999
Q ss_pred Cc
Q 039945 259 LI 260 (531)
Q Consensus 259 l~ 260 (531)
+.
T Consensus 263 ~~ 264 (342)
T smart00275 263 LF 264 (342)
T ss_pred hH
Confidence 75
No 466
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.04 E-value=0.011 Score=55.03 Aligned_cols=111 Identities=18% Similarity=0.298 Sum_probs=64.0
Q ss_pred eeEEEEecCC------hhhHHHHHHHhccccC---ceEEEEeCCCCCCCcchHH------HHHHHHHcCCceEEEEEecc
Q 039945 193 RHVSFVDCPG------HDILMATMLNGAAIMD---GALLLIAANESCPQPQTSE------HLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 193 ~~i~liDtPG------~~~~~~~~~~~l~~aD---~~llVvDa~~~~~~~qt~e------~l~~~~~~~~~~iIvviNK~ 257 (531)
-.+.++|+|| |-.-+++.++.+.+-+ ++++++|+.- ....++- .+...-.+.+| .|-|++||
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf--~vD~~KfiSG~lsAlsAMi~lE~P-~INvlsKM 174 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQF--LVDSTKFISGCLSALSAMISLEVP-HINVLSKM 174 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccch--hhhHHHHHHHHHHHHHHHHHhcCc-chhhhhHH
Confidence 5789999999 4445566666664432 5677777642 2222221 22233345555 58899999
Q ss_pred CCccHHHHHH---------------------------HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 258 DLIQENVAIN---------------------------QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 258 Dl~~~~~~~~---------------------------~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
|+......++ ..+.+..++.. ..-+.++|.-....+.|+.++..|...+
T Consensus 175 DLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d--~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 175 DLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDD--YSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhcc--ccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 9985411100 00111111111 2346788988888888988888887544
No 467
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.01 E-value=0.015 Score=59.17 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=48.9
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCC-------CcchHHHHHHHHH------cCCceEEEEEeccC
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCP-------QPQTSEHLAAVEI------MRLQHIIILQNKVD 258 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~-------~~qt~e~l~~~~~------~~~~~iIvviNK~D 258 (531)
...+.++|++|.+...+.+......++++++|+|.++... .....+.+.+++. +...|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 4679999999998888888888899999999999986310 1112222222221 23367999999999
Q ss_pred Cc
Q 039945 259 LI 260 (531)
Q Consensus 259 l~ 260 (531)
+.
T Consensus 240 ~f 241 (317)
T cd00066 240 LF 241 (317)
T ss_pred HH
Confidence 75
No 468
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.98 E-value=0.029 Score=45.35 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=25.6
Q ss_pred eEEEEecCChhhHHHH-HHHhccccCceEEEEeCCCC
Q 039945 194 HVSFVDCPGHDILMAT-MLNGAAIMDGALLLIAANES 229 (531)
Q Consensus 194 ~i~liDtPG~~~~~~~-~~~~l~~aD~~llVvDa~~~ 229 (531)
.+.++|+|+..+.... ....+..+|.++++++....
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 5799999996432211 24566788999999998764
No 469
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=95.89 E-value=0.0038 Score=53.44 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
+|+++|..++|||+|+.++..
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~ 22 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQ 22 (124)
T ss_pred EEEEECCCChhHHHHHHHHhc
Confidence 689999999999999999853
No 470
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.79 E-value=0.049 Score=54.59 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
+....|.++|-.|+||||-+.-|.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA 160 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLA 160 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHH
Confidence 345678999999999999999886
No 471
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.018 Score=54.69 Aligned_cols=101 Identities=12% Similarity=0.109 Sum_probs=60.5
Q ss_pred eeEEEEecCChhhHHHHH---HHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce---EEEEEeccCCccHHHHH
Q 039945 193 RHVSFVDCPGHDILMATM---LNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH---IIILQNKVDLIQENVAI 266 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~---~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~---iIvviNK~Dl~~~~~~~ 266 (531)
..+.+||-||+-+|.... ..-.+.+-+.++|+||.+.-..+-++.|....++..+.| +=|.+.|.|-...+..-
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ki 154 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKI 154 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhh
Confidence 679999999976543322 223467889999999976534445566666666665543 45789999977554322
Q ss_pred ----HHHHHHHHHHhcccCCCCC--EEEecccC
Q 039945 267 ----NQHEAIMKFIQGTVADGAP--VVPISAQL 293 (531)
Q Consensus 267 ----~~~~~i~~~l~~~~~~~~~--ii~iSa~~ 293 (531)
.+.++..+.|+..+...++ +.-+|-..
T Consensus 155 etqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD 187 (347)
T KOG3887|consen 155 ETQRDIHQRTNDELADAGLEKVQVSFYLTSIYD 187 (347)
T ss_pred hhHHHHHHHhhHHHHhhhhccceEEEEEeeecc
Confidence 2333344444433333433 44455444
No 472
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.78 E-value=0.031 Score=53.03 Aligned_cols=68 Identities=28% Similarity=0.482 Sum_probs=37.6
Q ss_pred eeeEEEEecCC------hhhHHHHHHHhccccCceEE---EEeCCCCCCCcchH--HH---HHHHHHcCCceEEEEEecc
Q 039945 192 LRHVSFVDCPG------HDILMATMLNGAAIMDGALL---LIAANESCPQPQTS--EH---LAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 192 ~~~i~liDtPG------~~~~~~~~~~~l~~aD~~ll---VvDa~~~~~~~qt~--e~---l~~~~~~~~~~iIvviNK~ 257 (531)
...+.++|+|| |.+-.....+.+..-|+-+. ++|+.- +..+... .. +.-+..+..| -|=|+.|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~y-cs~p~~~iS~lL~sl~tMl~melp-hVNvlSK~ 173 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHY-CSDPSKFISSLLVSLATMLHMELP-HVNVLSKA 173 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeecee-eCChHHHHHHHHHHHHHHHhhccc-chhhhhHh
Confidence 46899999999 34445555666655665444 455431 1111111 11 1112234445 47789999
Q ss_pred CCcc
Q 039945 258 DLIQ 261 (531)
Q Consensus 258 Dl~~ 261 (531)
|+..
T Consensus 174 Dl~~ 177 (290)
T KOG1533|consen 174 DLLK 177 (290)
T ss_pred HHHH
Confidence 9874
No 473
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.14 Score=51.21 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-+...|+++|.-++|||||++.|.+..
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhccC
Confidence 344678999999999999999998764
No 474
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.59 E-value=0.013 Score=43.99 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 039945 107 NIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~ 126 (531)
...|.|+.++|||||++++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999985
No 475
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.58 E-value=0.0092 Score=57.37 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-|+|+|++|+|||||+|.+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 476
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=95.54 E-value=0.1 Score=51.28 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=44.3
Q ss_pred eeEEEEecCChhhH--------HHHHHHhccccCceEEEEeCCCCC-------CCcchHHH-HHHHHHcCCceEEEEEec
Q 039945 193 RHVSFVDCPGHDIL--------MATMLNGAAIMDGALLLIAANESC-------PQPQTSEH-LAAVEIMRLQHIIILQNK 256 (531)
Q Consensus 193 ~~i~liDtPG~~~~--------~~~~~~~l~~aD~~llVvDa~~~~-------~~~qt~e~-l~~~~~~~~~~iIvviNK 256 (531)
....++.|-|..+- ....+..=-..|+++-||||.... .....-|. .+++. .. -+++||
T Consensus 146 fD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~----AD-~II~NK 220 (391)
T KOG2743|consen 146 FDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIAL----AD-RIIMNK 220 (391)
T ss_pred cceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhh----hh-eeeecc
Confidence 56889999996542 112222223459999999997421 11111111 12221 11 245899
Q ss_pred cCCccHHHHHHHHHHHHH
Q 039945 257 VDLIQENVAINQHEAIMK 274 (531)
Q Consensus 257 ~Dl~~~~~~~~~~~~i~~ 274 (531)
.|++..+.+....+.++.
T Consensus 221 tDli~~e~~~~l~q~I~~ 238 (391)
T KOG2743|consen 221 TDLVSEEEVKKLRQRIRS 238 (391)
T ss_pred ccccCHHHHHHHHHHHHH
Confidence 999998777776666654
No 477
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.32 E-value=0.1 Score=43.38 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=25.9
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCC
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANES 229 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~ 229 (531)
..+.++|+|+.... .....+..+|.++++++++..
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCCHH
Confidence 46899999996432 233666789999999998753
No 478
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=0.056 Score=54.90 Aligned_cols=67 Identities=24% Similarity=0.213 Sum_probs=39.8
Q ss_pred cccceeeEEEEecCC-hh---hHHHHHHH--hccccCceEEEEeCCCCCCCcchHHHH-H-HHHHcCCceEEEEEeccCC
Q 039945 188 RMKLLRHVSFVDCPG-HD---ILMATMLN--GAAIMDGALLLIAANESCPQPQTSEHL-A-AVEIMRLQHIIILQNKVDL 259 (531)
Q Consensus 188 ~~~~~~~i~liDtPG-~~---~~~~~~~~--~l~~aD~~llVvDa~~~~~~~qt~e~l-~-~~~~~~~~~iIvviNK~Dl 259 (531)
+..++..+.|+||.| |. ....+++. .+-.+|-+|+|+||+-| |..+.. . .-+..++- -++++|+|-
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG----Qaae~Qa~aFk~~vdvg--~vIlTKlDG 252 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG----QAAEAQARAFKETVDVG--AVILTKLDG 252 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc----HhHHHHHHHHHHhhccc--eEEEEeccc
Confidence 334457899999999 32 23344433 23558999999999865 222221 1 11222332 456899996
Q ss_pred c
Q 039945 260 I 260 (531)
Q Consensus 260 ~ 260 (531)
.
T Consensus 253 h 253 (483)
T KOG0780|consen 253 H 253 (483)
T ss_pred C
Confidence 4
No 479
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.12 E-value=0.017 Score=52.90 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.+||+|.+|+|||||+|.+.|-.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc
Confidence 468999999999999999999864
No 480
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.09 E-value=0.017 Score=55.29 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
=-|+|+|++|||||||+|.|.+-.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 358999999999999999998753
No 481
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.08 E-value=0.017 Score=50.68 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|..|+|||||++.|+|..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 468999999999999999999874
No 482
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.02 E-value=1.3 Score=43.65 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.|+.|++|+|||||+|.+.|-.
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~ 48 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLT 48 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccC
Confidence 35999999999999999999853
No 483
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.92 E-value=0.022 Score=54.06 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=22.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
++..-|+|+|.+|+|||||+++|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45577999999999999999999864
No 484
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=94.80 E-value=0.95 Score=49.95 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=54.4
Q ss_pred CceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCcccc-ccccc
Q 039945 340 RGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLT-RADRL 418 (531)
Q Consensus 340 ~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~-~~~i~ 418 (531)
.+.|+..+|..|+|+.|..|. .+. |. ...+|.||++++.++++|..|+-|++.+. +.. -.++.
T Consensus 479 ~~~i~G~~V~~G~i~~~~~v~-r~~-------~~-----~iG~i~slk~~k~~V~ev~~G~Ecgi~i~---~~~~g~~~~ 542 (590)
T TIGR00491 479 KPAIVGVEVLTGVIRQGYPLM-KDD-------GE-----TVGTVRSMQDKGENVKSASAGQEVAIAIK---DVVYGRTIH 542 (590)
T ss_pred CCeEEEEEEecCEEecCCeEE-ecC-------CE-----EEEEEchhcccCccccEECCCCEEEEEEe---CccccCCCC
Confidence 468999999999999998864 322 22 23789999999999999999999999886 332 24677
Q ss_pred cceeecc
Q 039945 419 VGQVLGE 425 (531)
Q Consensus 419 ~G~vl~~ 425 (531)
.|++|..
T Consensus 543 ~gD~l~~ 549 (590)
T TIGR00491 543 EGDTLYV 549 (590)
T ss_pred CCCEEEE
Confidence 7887743
No 485
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.65 E-value=0.028 Score=48.08 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
.|+|.|.++|||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999974
No 486
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.60 E-value=0.029 Score=53.81 Aligned_cols=27 Identities=41% Similarity=0.628 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.+.=+|+++|+.|+|||||++.|.|..
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 334579999999999999999999874
No 487
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=94.60 E-value=0.056 Score=57.52 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCc
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQT 130 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~ 130 (531)
.--.+++|..|+|||||++.|+|...
T Consensus 34 GEV~aL~GeNGAGKSTLmKiLsGv~~ 59 (500)
T COG1129 34 GEVHALLGENGAGKSTLMKILSGVYP 59 (500)
T ss_pred ceEEEEecCCCCCHHHHHHHHhCccc
Confidence 34579999999999999999998753
No 488
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.56 E-value=0.031 Score=42.97 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 039945 108 IGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 108 V~iiG~~~~GKSTLi~~L~g~ 128 (531)
|++.|.+++||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999753
No 489
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.55 E-value=0.028 Score=52.76 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQT 130 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~ 130 (531)
--++|+|+.|+|||||+++|+|...
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCccC
Confidence 3479999999999999999999753
No 490
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.47 E-value=0.033 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.=.++|+|++|+|||||+++|.+-
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999875
No 491
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=94.45 E-value=0.15 Score=50.51 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=52.1
Q ss_pred eEEEEecCChh-hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHH
Q 039945 194 HVSFVDCPGHD-ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAI 272 (531)
Q Consensus 194 ~i~liDtPG~~-~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i 272 (531)
....-+-|||- .-++.+...+...|++|=|=||.-+ ....... +-+.++.++-|+|+|||||.+........+.+
T Consensus 23 ~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiP-Lssrn~~---~~~~~~~k~riiVlNK~DLad~~~~k~~iq~~ 98 (335)
T KOG2485|consen 23 NMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIP-LSSRNEL---FQDFLPPKPRIIVLNKMDLADPKEQKKIIQYL 98 (335)
T ss_pred CCccccCchHHHHHHHHHHhhcccccEEEEeeccccC-CccccHH---HHHhcCCCceEEEEecccccCchhhhHHHHHH
Confidence 34455679985 4566677778999999999999876 3433322 22233456779999999999865555555444
Q ss_pred HH
Q 039945 273 MK 274 (531)
Q Consensus 273 ~~ 274 (531)
..
T Consensus 99 ~~ 100 (335)
T KOG2485|consen 99 EW 100 (335)
T ss_pred Hh
Confidence 43
No 492
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.43 E-value=0.1 Score=52.97 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..||.|.|.+|+|||||+++|++.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 493
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.42 E-value=0.032 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.++++|+.|+|||||++.|.|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 494
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.39 E-value=0.036 Score=51.33 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.-.++++|+.|+|||||++.|.|..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3468999999999999999999864
No 495
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.36 E-value=0.034 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.-+++++|.+|+|||||+++|++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4679999999999999999999863
No 496
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.35 E-value=0.24 Score=42.61 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 039945 108 IGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 108 V~iiG~~~~GKSTLi~~L~g~ 128 (531)
|.+.|.+|+|||||++.|...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 578999999999999999753
No 497
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.08 Score=48.75 Aligned_cols=24 Identities=38% Similarity=0.302 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..-+++.|++|+|||||+++|+..
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 355899999999999999999864
No 498
>PRK07261 topology modulation protein; Provisional
Probab=94.27 E-value=0.036 Score=50.96 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
+|+|+|.+|+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 499
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.27 E-value=0.029 Score=51.01 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
||+|+|.+++|||||+++|..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999973
No 500
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.037 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
++|.|+|.|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999753
Done!