Query 039945
Match_columns 531
No_of_seqs 458 out of 4193
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s0u_A EIF-2-gamma, translatio 100.0 8.8E-62 3E-66 509.3 43.2 403 102-525 5-407 (408)
2 1kk1_A EIF2gamma; initiation o 100.0 3E-61 1E-65 505.7 45.4 403 102-525 7-409 (410)
3 3sjy_A Translation initiation 100.0 6.4E-59 2.2E-63 486.8 44.3 396 103-525 6-402 (403)
4 3j2k_7 ERF3, eukaryotic polype 100.0 7.9E-56 2.7E-60 467.3 40.8 341 102-526 14-436 (439)
5 1d2e_A Elongation factor TU (E 100.0 1.7E-54 5.8E-59 452.3 38.5 349 104-528 2-386 (397)
6 2c78_A Elongation factor TU-A; 100.0 3.4E-54 1.2E-58 451.5 35.8 349 103-526 9-402 (405)
7 1f60_A Elongation factor EEF1A 100.0 3.8E-54 1.3E-58 456.9 31.3 342 103-526 5-438 (458)
8 1jny_A EF-1-alpha, elongation 100.0 1.6E-53 5.4E-58 449.9 35.3 343 103-526 4-426 (435)
9 3mca_A HBS1, elongation factor 100.0 5.3E-54 1.8E-58 467.8 25.7 342 102-526 174-590 (592)
10 1r5b_A Eukaryotic peptide chai 100.0 2.1E-53 7.3E-58 452.2 28.1 341 101-526 39-464 (467)
11 1zun_B Sulfate adenylate trans 100.0 2.2E-52 7.5E-57 441.3 34.3 341 103-526 22-434 (434)
12 2elf_A Protein translation elo 100.0 3.6E-52 1.2E-56 429.1 33.1 325 107-525 23-370 (370)
13 3p26_A Elongation factor 1 alp 100.0 5.6E-52 1.9E-56 443.8 35.8 349 102-527 30-475 (483)
14 1wb1_A Translation elongation 100.0 1.3E-53 4.5E-58 455.0 19.6 346 104-527 18-393 (482)
15 3izq_1 HBS1P, elongation facto 100.0 5.7E-52 1.9E-56 453.0 30.7 348 102-526 164-608 (611)
16 3avx_A Elongation factor TS, e 100.0 8.1E-51 2.8E-55 456.5 39.5 350 102-526 293-675 (1289)
17 2ywe_A GTP-binding protein LEP 100.0 1.6E-33 5.5E-38 304.6 27.1 263 103-429 4-282 (600)
18 3cb4_D GTP-binding protein LEP 100.0 1.5E-32 5.2E-37 297.6 27.9 261 104-428 3-279 (599)
19 3vqt_A RF-3, peptide chain rel 100.0 9.4E-33 3.2E-37 297.7 23.4 259 103-427 29-400 (548)
20 3j25_A Tetracycline resistance 100.0 1.5E-33 5.3E-38 309.8 3.5 238 105-405 2-316 (638)
21 3tr5_A RF-3, peptide chain rel 100.0 2.8E-31 9.6E-36 284.8 21.0 257 103-426 11-381 (528)
22 4fn5_A EF-G 1, elongation fact 100.0 7.1E-31 2.4E-35 292.3 22.3 263 103-427 11-404 (709)
23 2h5e_A Peptide chain release f 100.0 4.2E-30 1.4E-34 276.0 22.0 258 103-427 11-383 (529)
24 2rdo_7 EF-G, elongation factor 100.0 2.1E-29 7E-34 279.5 26.2 263 103-427 8-401 (704)
25 3izy_P Translation initiation 100.0 3.1E-32 1E-36 291.0 2.5 253 105-429 4-261 (537)
26 1zo1_I IF2, translation initia 100.0 3.8E-31 1.3E-35 280.3 10.7 250 104-426 3-257 (501)
27 1dar_A EF-G, elongation factor 100.0 1.1E-28 3.6E-33 273.5 25.0 260 103-428 10-394 (691)
28 1g7s_A Translation initiation 100.0 3.6E-29 1.2E-33 271.5 17.3 272 105-427 5-328 (594)
29 2dy1_A Elongation factor G; tr 100.0 2.7E-28 9.2E-33 269.4 22.5 254 103-428 7-367 (665)
30 3e1y_E Eukaryotic peptide chai 100.0 1.8E-28 6.2E-33 231.1 18.0 168 315-526 3-198 (204)
31 2xex_A Elongation factor G; GT 100.0 5.3E-28 1.8E-32 268.0 24.3 256 103-427 8-393 (693)
32 1n0u_A EF-2, elongation factor 99.9 2.3E-25 7.9E-30 251.6 23.0 267 103-405 17-457 (842)
33 3gee_A MNME, tRNA modification 99.8 2.5E-22 8.6E-27 212.7 1.6 231 18-309 158-397 (476)
34 4dhe_A Probable GTP-binding pr 99.8 3.3E-20 1.1E-24 177.0 15.4 168 104-312 28-213 (223)
35 3iev_A GTP-binding protein ERA 99.8 5.4E-20 1.8E-24 185.0 16.8 161 104-310 9-182 (308)
36 1wf3_A GTP-binding protein; GT 99.8 5.6E-20 1.9E-24 184.0 15.2 156 106-310 8-173 (301)
37 3pqc_A Probable GTP-binding pr 99.8 4.8E-19 1.7E-23 164.6 18.0 159 104-309 22-193 (195)
38 2hjg_A GTP-binding protein ENG 99.8 6E-20 2.1E-24 193.5 11.9 161 104-308 174-347 (436)
39 1svi_A GTP-binding protein YSX 99.8 3.9E-19 1.3E-23 165.6 16.0 160 103-309 21-194 (195)
40 1zj6_A ADP-ribosylation factor 99.8 2.1E-19 7.1E-24 166.7 11.5 162 103-312 14-180 (187)
41 1upt_A ARL1, ADP-ribosylation 99.8 2.4E-19 8.2E-24 163.0 11.0 161 103-309 5-168 (171)
42 1zd9_A ADP-ribosylation factor 99.8 2.8E-19 9.5E-24 166.1 10.9 162 103-309 20-184 (188)
43 2lkc_A Translation initiation 99.8 1.2E-19 4.1E-24 166.3 7.6 162 103-308 6-169 (178)
44 2efe_B Small GTP-binding prote 99.8 5.8E-19 2E-23 162.2 11.9 164 103-310 10-175 (181)
45 3t1o_A Gliding protein MGLA; G 99.8 9.2E-19 3.1E-23 163.0 13.3 164 103-308 12-190 (198)
46 1ega_A Protein (GTP-binding pr 99.8 6.4E-19 2.2E-23 176.5 12.9 157 106-310 9-175 (301)
47 3geh_A MNME, tRNA modification 99.8 6.3E-21 2.2E-25 201.2 -2.2 156 103-311 222-385 (462)
48 1r8s_A ADP-ribosylation factor 99.8 6.1E-19 2.1E-23 159.3 11.2 156 106-309 1-161 (164)
49 1ksh_A ARF-like protein 2; sma 99.8 6.6E-19 2.2E-23 162.9 11.5 159 103-309 16-179 (186)
50 4bas_A ADP-ribosylation factor 99.8 7.8E-19 2.7E-23 164.0 11.8 162 103-309 15-188 (199)
51 1g16_A RAS-related protein SEC 99.8 3.9E-19 1.3E-23 161.3 9.4 160 105-309 3-164 (170)
52 1fzq_A ADP-ribosylation factor 99.8 2.2E-18 7.5E-23 159.2 14.6 159 103-309 14-177 (181)
53 2h17_A ADP-ribosylation factor 99.8 5.2E-19 1.8E-23 163.2 10.3 157 103-307 19-180 (181)
54 3clv_A RAB5 protein, putative; 99.8 6.6E-19 2.2E-23 164.6 11.1 110 193-308 93-202 (208)
55 2hxs_A RAB-26, RAS-related pro 99.8 5.1E-19 1.7E-23 162.1 10.1 165 103-310 4-173 (178)
56 2erx_A GTP-binding protein DI- 99.8 1E-18 3.6E-23 158.6 12.1 161 105-310 3-167 (172)
57 3i8s_A Ferrous iron transport 99.8 2.3E-19 7.8E-24 177.4 8.2 155 105-310 3-169 (274)
58 1ek0_A Protein (GTP-binding pr 99.8 1.2E-18 4.1E-23 157.9 12.0 163 105-309 3-168 (170)
59 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.7E-18 5.7E-23 158.5 13.0 161 103-308 5-172 (177)
60 2dyk_A GTP-binding protein; GT 99.8 1.9E-18 6.5E-23 155.4 13.1 153 106-309 2-161 (161)
61 1r2q_A RAS-related protein RAB 99.8 8.8E-19 3E-23 158.8 10.9 162 104-309 5-168 (170)
62 2fg5_A RAB-22B, RAS-related pr 99.8 1E-18 3.4E-23 162.9 11.5 164 103-310 21-186 (192)
63 2h57_A ADP-ribosylation factor 99.8 7E-19 2.4E-23 163.5 10.2 161 103-309 19-186 (190)
64 4dcu_A GTP-binding protein ENG 99.8 1.1E-18 3.7E-23 185.0 12.8 162 103-308 193-367 (456)
65 2fh5_B SR-beta, signal recogni 99.8 3E-18 1E-22 162.4 14.4 162 103-307 5-213 (214)
66 3tw8_B RAS-related protein RAB 99.8 7.3E-19 2.5E-23 161.2 9.7 162 103-308 7-169 (181)
67 2il1_A RAB12; G-protein, GDP, 99.8 1.1E-18 3.8E-23 162.7 11.1 162 103-308 24-188 (192)
68 1z0j_A RAB-22, RAS-related pro 99.8 1.6E-18 5.6E-23 157.2 11.9 162 104-309 5-168 (170)
69 3iby_A Ferrous iron transport 99.8 5E-19 1.7E-23 173.0 8.8 151 106-307 2-164 (256)
70 3tkl_A RAS-related protein RAB 99.8 1.1E-18 3.8E-23 162.5 10.7 163 103-309 14-178 (196)
71 1ky3_A GTP-binding protein YPT 99.8 1.9E-18 6.6E-23 158.5 12.2 165 103-308 6-176 (182)
72 2g6b_A RAS-related protein RAB 99.8 2.4E-18 8.2E-23 157.9 12.7 164 103-309 8-173 (180)
73 1f6b_A SAR1; gtpases, N-termin 99.8 8.7E-19 3E-23 164.5 9.9 157 104-308 24-197 (198)
74 1m2o_B GTP-binding protein SAR 99.8 9.9E-19 3.4E-23 162.9 10.2 157 103-307 21-189 (190)
75 3cph_A RAS-related protein SEC 99.8 8.8E-19 3E-23 165.6 9.8 162 103-309 18-181 (213)
76 2y8e_A RAB-protein 6, GH09086P 99.8 2.1E-18 7.3E-23 157.8 12.0 161 105-309 14-176 (179)
77 3bc1_A RAS-related protein RAB 99.8 5.5E-18 1.9E-22 157.1 14.7 172 103-308 9-183 (195)
78 2b6h_A ADP-ribosylation factor 99.8 1.3E-18 4.3E-23 162.5 10.3 159 103-309 27-190 (192)
79 1vg8_A RAS-related protein RAB 99.8 1E-18 3.4E-23 164.4 9.4 163 103-309 6-174 (207)
80 1c1y_A RAS-related protein RAP 99.8 2.1E-18 7.1E-23 156.0 11.0 160 105-308 3-165 (167)
81 2ew1_A RAS-related protein RAB 99.8 3.4E-18 1.2E-22 161.0 12.8 163 103-309 24-188 (201)
82 1z0f_A RAB14, member RAS oncog 99.8 2.1E-18 7.1E-23 157.9 11.0 162 103-308 13-176 (179)
83 2gf0_A GTP-binding protein DI- 99.8 3.6E-18 1.2E-22 159.5 12.7 162 103-310 6-171 (199)
84 1zbd_A Rabphilin-3A; G protein 99.8 4.3E-18 1.5E-22 159.8 13.2 161 104-308 7-169 (203)
85 4dsu_A GTPase KRAS, isoform 2B 99.8 2.4E-18 8.3E-23 159.0 11.3 160 104-309 3-165 (189)
86 1z08_A RAS-related protein RAB 99.8 1.1E-18 3.8E-23 158.4 8.8 162 103-308 4-167 (170)
87 2gf9_A RAS-related protein RAB 99.8 1.4E-18 4.6E-23 161.4 9.5 162 103-308 20-183 (189)
88 1mky_A Probable GTP-binding pr 99.8 2.6E-18 8.8E-23 181.2 12.7 154 106-309 2-165 (439)
89 1kao_A RAP2A; GTP-binding prot 99.8 3.6E-18 1.2E-22 154.1 11.9 159 105-308 3-164 (167)
90 2p5s_A RAS and EF-hand domain 99.8 4.6E-18 1.6E-22 159.3 12.9 165 103-309 26-196 (199)
91 1xzp_A Probable tRNA modificat 99.8 8.3E-19 2.8E-23 185.8 8.7 154 104-309 242-404 (482)
92 2f7s_A C25KG, RAS-related prot 99.7 1.7E-17 5.9E-22 157.4 16.4 168 103-308 23-197 (217)
93 2gj8_A MNME, tRNA modification 99.7 2.2E-18 7.6E-23 157.9 9.7 154 104-310 3-166 (172)
94 2bme_A RAB4A, RAS-related prot 99.7 4.8E-18 1.6E-22 156.8 11.9 162 103-309 8-172 (186)
95 1x3s_A RAS-related protein RAB 99.7 2.2E-18 7.5E-23 160.3 9.7 161 104-309 14-177 (195)
96 2ce2_X GTPase HRAS; signaling 99.7 4.4E-18 1.5E-22 153.2 11.4 158 105-308 3-163 (166)
97 2fu5_C RAS-related protein RAB 99.7 1.3E-18 4.3E-23 160.4 7.6 162 103-308 6-169 (183)
98 3q72_A GTP-binding protein RAD 99.7 3E-18 1E-22 155.0 9.9 158 105-308 2-162 (166)
99 1moz_A ARL1, ADP-ribosylation 99.7 2.1E-18 7.2E-23 158.8 8.9 158 103-308 16-178 (183)
100 1z2a_A RAS-related protein RAB 99.7 2.3E-18 7.9E-23 155.8 8.9 161 104-308 4-165 (168)
101 1u8z_A RAS-related protein RAL 99.7 7.5E-18 2.6E-22 152.1 12.1 159 105-308 4-165 (168)
102 2oil_A CATX-8, RAS-related pro 99.7 2.4E-18 8.3E-23 160.2 9.1 162 103-308 23-186 (193)
103 2x77_A ADP-ribosylation factor 99.7 8.4E-19 2.9E-23 162.7 5.8 159 103-309 20-183 (189)
104 1mky_A Probable GTP-binding pr 99.7 8.6E-18 2.9E-22 177.2 14.2 161 104-308 179-353 (439)
105 1mh1_A RAC1; GTP-binding, GTPa 99.7 6E-18 2.1E-22 155.9 11.4 165 104-311 4-181 (186)
106 3a1s_A Iron(II) transport prot 99.7 3E-18 1E-22 167.8 9.6 155 104-309 4-166 (258)
107 2wji_A Ferrous iron transport 99.7 4.2E-18 1.4E-22 154.8 10.0 153 105-308 3-163 (165)
108 1z06_A RAS-related protein RAB 99.7 8.5E-18 2.9E-22 156.0 12.2 163 103-309 18-187 (189)
109 4gzl_A RAS-related C3 botulinu 99.7 6.3E-18 2.2E-22 159.3 11.5 163 103-308 28-203 (204)
110 3dz8_A RAS-related protein RAB 99.7 4.4E-18 1.5E-22 158.3 10.2 161 103-308 21-184 (191)
111 2hjg_A GTP-binding protein ENG 99.7 2.1E-18 7.2E-23 181.7 9.0 154 106-310 4-165 (436)
112 2hup_A RAS-related protein RAB 99.7 8E-18 2.7E-22 158.2 12.0 163 103-309 27-192 (201)
113 2bov_A RAla, RAS-related prote 99.7 1.5E-17 5E-22 156.2 13.5 162 103-309 12-176 (206)
114 3reg_A RHO-like small GTPase; 99.7 2.4E-18 8.1E-23 160.5 8.0 164 103-309 21-187 (194)
115 2a5j_A RAS-related protein RAB 99.7 4.2E-18 1.4E-22 158.5 9.7 162 103-308 19-182 (191)
116 2nzj_A GTP-binding protein REM 99.7 1.3E-17 4.3E-22 152.2 12.4 160 104-308 3-167 (175)
117 3b1v_A Ferrous iron uptake tra 99.7 3.7E-18 1.3E-22 168.2 9.5 153 105-309 3-163 (272)
118 3llu_A RAS-related GTP-binding 99.7 2.7E-17 9.2E-22 153.8 14.3 165 103-308 18-195 (196)
119 3con_A GTPase NRAS; structural 99.7 1.3E-17 4.6E-22 154.6 11.9 159 104-308 20-181 (190)
120 3k53_A Ferrous iron transport 99.7 3.5E-18 1.2E-22 168.6 8.3 155 105-309 3-165 (271)
121 2o52_A RAS-related protein RAB 99.7 4.6E-18 1.6E-22 159.7 8.7 162 103-308 23-186 (200)
122 2bcg_Y Protein YP2, GTP-bindin 99.7 4.8E-18 1.6E-22 159.9 8.8 163 103-309 6-170 (206)
123 3bwd_D RAC-like GTP-binding pr 99.7 3.7E-18 1.2E-22 156.9 7.6 164 103-309 6-180 (182)
124 3qq5_A Small GTP-binding prote 99.7 2.5E-18 8.4E-23 179.2 7.0 159 103-311 32-197 (423)
125 4djt_A GTP-binding nuclear pro 99.7 4.4E-18 1.5E-22 161.7 7.8 164 103-310 9-175 (218)
126 3o47_A ADP-ribosylation factor 99.7 4.8E-18 1.6E-22 172.3 8.6 161 103-309 163-326 (329)
127 2a9k_A RAS-related protein RAL 99.7 1.6E-17 5.6E-22 153.0 11.4 160 104-308 17-179 (187)
128 3kkq_A RAS-related protein M-R 99.7 2.8E-17 9.7E-22 151.3 12.9 161 103-308 16-180 (183)
129 2qu8_A Putative nucleolar GTP- 99.7 2.9E-17 1E-21 157.5 13.5 161 105-308 29-203 (228)
130 2fn4_A P23, RAS-related protei 99.7 9.6E-18 3.3E-22 153.7 9.2 162 103-309 7-171 (181)
131 3oes_A GTPase rhebl1; small GT 99.7 3.1E-18 1.1E-22 160.8 5.6 162 102-309 21-186 (201)
132 3q85_A GTP-binding protein REM 99.7 1.7E-17 5.9E-22 150.5 10.4 160 105-308 2-165 (169)
133 2atx_A Small GTP binding prote 99.7 1.9E-17 6.6E-22 154.2 10.8 163 104-308 17-191 (194)
134 2j0v_A RAC-like GTP-binding pr 99.7 1.6E-17 5.6E-22 157.0 10.3 166 103-311 7-181 (212)
135 2j1l_A RHO-related GTP-binding 99.7 4.7E-17 1.6E-21 154.4 13.0 163 103-308 32-207 (214)
136 3cpj_B GTP-binding protein YPT 99.7 7.7E-18 2.6E-22 160.9 7.3 164 103-310 11-176 (223)
137 4dcu_A GTP-binding protein ENG 99.7 1.9E-17 6.4E-22 175.5 11.0 154 106-310 24-185 (456)
138 2gco_A H9, RHO-related GTP-bin 99.7 3.1E-17 1.1E-21 154.0 10.8 161 104-307 24-197 (201)
139 3ihw_A Centg3; RAS, centaurin, 99.7 1.8E-17 6E-22 153.7 8.9 158 102-308 17-178 (184)
140 2iwr_A Centaurin gamma 1; ANK 99.7 1.5E-17 5.1E-22 152.5 8.3 157 103-308 5-167 (178)
141 2fv8_A H6, RHO-related GTP-bin 99.7 3.7E-17 1.3E-21 154.2 11.2 164 104-309 24-199 (207)
142 3t5g_A GTP-binding protein RHE 99.7 1.6E-17 5.4E-22 152.7 8.4 161 103-309 4-168 (181)
143 2yc2_C IFT27, small RAB-relate 99.7 1.3E-17 4.4E-22 156.6 7.5 166 103-308 18-190 (208)
144 3r7w_A Gtpase1, GTP-binding pr 99.7 1.8E-16 6.1E-21 159.2 15.9 163 105-308 3-179 (307)
145 2wjg_A FEOB, ferrous iron tran 99.7 2.5E-17 8.5E-22 152.4 8.2 155 105-310 7-169 (188)
146 3t5d_A Septin-7; GTP-binding p 99.7 1.2E-16 4.2E-21 157.8 13.5 88 217-309 116-203 (274)
147 4dkx_A RAS-related protein RAB 99.7 8.4E-17 2.9E-21 153.1 11.7 162 105-310 13-176 (216)
148 3lvq_E ARF-GAP with SH3 domain 99.7 3.9E-17 1.3E-21 175.0 9.7 160 103-310 320-484 (497)
149 2atv_A RERG, RAS-like estrogen 99.7 6.1E-17 2.1E-21 151.2 9.7 160 103-308 26-189 (196)
150 1m7b_A RND3/RHOE small GTP-bin 99.7 1.3E-16 4.4E-21 147.4 11.4 162 103-307 5-180 (184)
151 3gj0_A GTP-binding nuclear pro 99.7 1.7E-17 5.7E-22 158.2 5.6 159 103-309 13-174 (221)
152 2qtf_A Protein HFLX, GTP-bindi 99.7 6.1E-17 2.1E-21 166.0 10.1 164 106-311 180-355 (364)
153 3cbq_A GTP-binding protein REM 99.7 4.9E-17 1.7E-21 152.1 8.5 164 103-310 21-188 (195)
154 2xtp_A GTPase IMAP family memb 99.7 6.1E-17 2.1E-21 158.5 9.5 162 103-309 20-207 (260)
155 3q3j_B RHO-related GTP-binding 99.7 7.5E-17 2.6E-21 153.1 9.6 164 103-309 25-202 (214)
156 3l0i_B RAS-related protein RAB 99.7 9.3E-19 3.2E-23 164.1 -4.4 163 103-309 31-195 (199)
157 2q3h_A RAS homolog gene family 99.7 6.5E-17 2.2E-21 151.4 8.1 164 103-309 18-194 (201)
158 2cxx_A Probable GTP-binding pr 99.7 5.4E-16 1.9E-20 143.3 14.2 153 106-309 2-183 (190)
159 3c5c_A RAS-like protein 12; GD 99.7 8.2E-17 2.8E-21 149.4 8.3 160 103-308 19-184 (187)
160 1lnz_A SPO0B-associated GTP-bi 99.7 6E-17 2E-21 164.4 7.9 158 106-310 159-330 (342)
161 1gwn_A RHO-related GTP-binding 99.7 1.7E-16 5.7E-21 149.8 9.9 162 103-307 26-201 (205)
162 3th5_A RAS-related C3 botulinu 99.5 7.1E-18 2.4E-22 158.6 0.0 163 103-307 28-202 (204)
163 2zej_A Dardarin, leucine-rich 99.6 8.7E-16 3E-20 142.0 12.0 115 193-309 56-177 (184)
164 2e87_A Hypothetical protein PH 99.6 1.6E-15 5.6E-20 155.4 13.8 157 104-308 166-334 (357)
165 3lxw_A GTPase IMAP family memb 99.6 1.7E-15 5.7E-20 147.3 12.6 163 103-310 19-208 (247)
166 2g3y_A GTP-binding protein GEM 99.6 1.5E-15 5.3E-20 143.9 11.1 163 103-308 35-201 (211)
167 1pui_A ENGB, probable GTP-bind 99.6 6.1E-15 2.1E-19 138.9 14.8 162 103-309 24-198 (210)
168 2wkq_A NPH1-1, RAS-related C3 99.6 1.9E-15 6.6E-20 152.6 11.3 164 103-309 153-329 (332)
169 3lxx_A GTPase IMAP family memb 99.6 6.8E-15 2.3E-19 142.0 14.3 163 103-309 27-213 (239)
170 2aka_B Dynamin-1; fusion prote 99.6 5.3E-16 1.8E-20 154.8 6.6 110 193-306 125-249 (299)
171 2j69_A Bacterial dynamin-like 99.6 7E-15 2.4E-19 162.9 15.4 114 193-308 174-323 (695)
172 1nrj_B SR-beta, signal recogni 99.6 1.3E-15 4.4E-20 144.5 6.4 146 103-296 10-170 (218)
173 1jwy_B Dynamin A GTPase domain 99.6 2.5E-15 8.5E-20 151.1 7.2 111 193-310 131-262 (315)
174 3dpu_A RAB family protein; roc 99.6 5E-15 1.7E-19 160.0 9.6 169 103-310 39-208 (535)
175 3c5h_A Glucocorticoid receptor 99.6 5.4E-15 1.8E-19 144.3 8.9 87 216-308 162-253 (255)
176 2cjw_A GTP-binding protein GEM 99.6 3.8E-15 1.3E-19 138.8 7.4 162 104-308 5-170 (192)
177 1wxq_A GTP-binding protein; st 99.5 4E-15 1.4E-19 154.1 5.8 55 248-309 215-270 (397)
178 2f9l_A RAB11B, member RAS onco 99.5 1.7E-14 5.8E-19 135.0 9.1 160 105-308 5-166 (199)
179 3p32_A Probable GTPase RV1496/ 99.5 1.7E-14 5.7E-19 147.7 9.6 108 193-309 172-283 (355)
180 2p67_A LAO/AO transport system 99.5 2.6E-14 8.9E-19 145.5 9.6 108 193-309 149-260 (341)
181 2www_A Methylmalonic aciduria 99.5 2.8E-13 9.4E-18 138.2 13.6 107 193-308 167-277 (349)
182 4a9a_A Ribosome-interacting GT 99.5 1.4E-13 4.8E-18 140.7 10.4 114 103-259 70-194 (376)
183 2qag_A Septin-2, protein NEDD5 99.4 2.1E-13 7.1E-18 139.7 11.1 88 218-310 147-237 (361)
184 3def_A T7I23.11 protein; chlor 99.4 1.3E-13 4.3E-18 135.1 8.8 117 104-260 35-164 (262)
185 2ged_A SR-beta, signal recogni 99.4 4.3E-14 1.5E-18 131.1 4.6 129 103-276 46-185 (193)
186 1oix_A RAS-related protein RAB 99.4 1.2E-13 4.1E-18 128.5 7.6 160 104-307 28-189 (191)
187 2x2e_A Dynamin-1; nitration, h 99.4 2.7E-14 9.3E-19 146.1 3.0 110 193-306 130-254 (353)
188 2qpt_A EH domain-containing pr 99.4 3.7E-13 1.3E-17 145.1 11.4 80 193-273 154-244 (550)
189 1h65_A Chloroplast outer envel 99.4 8.8E-13 3E-17 129.7 12.3 119 104-262 38-169 (270)
190 3r7w_B Gtpase2, GTP-binding pr 99.4 1.1E-12 3.7E-17 131.1 12.0 159 107-309 1-173 (331)
191 1udx_A The GTP-binding protein 99.4 9.7E-13 3.3E-17 136.6 11.7 158 105-310 157-325 (416)
192 3zvr_A Dynamin-1; hydrolase, D 99.4 1.7E-13 5.9E-18 151.0 5.6 109 193-306 150-274 (772)
193 2wsm_A Hydrogenase expression/ 99.3 1.6E-12 5.4E-17 123.4 8.6 103 193-309 109-213 (221)
194 1yrb_A ATP(GTP)binding protein 99.3 1.7E-11 6E-16 119.4 16.0 113 193-309 109-256 (262)
195 3t34_A Dynamin-related protein 99.3 1.2E-12 4.1E-17 134.3 7.4 103 193-302 136-253 (360)
196 2qm8_A GTPase/ATPase; G protei 99.2 4.7E-11 1.6E-15 121.0 13.0 106 193-308 148-259 (337)
197 1jal_A YCHF protein; nucleotid 99.2 3.3E-11 1.1E-15 122.5 11.5 91 106-228 3-108 (363)
198 2qag_C Septin-7; cell cycle, c 99.2 6.3E-11 2.2E-15 123.0 12.3 86 218-309 140-226 (418)
199 2qnr_A Septin-2, protein NEDD5 99.2 4.4E-11 1.5E-15 119.3 10.2 86 218-309 128-213 (301)
200 2dby_A GTP-binding protein; GD 99.1 7.8E-11 2.7E-15 120.4 9.9 36 193-228 69-111 (368)
201 2hf9_A Probable hydrogenase ni 99.0 8.5E-10 2.9E-14 104.8 9.4 104 193-308 119-222 (226)
202 2ohf_A Protein OLA1, GTP-bindi 98.9 6.8E-10 2.3E-14 113.9 5.9 158 104-310 21-195 (396)
203 2j37_W Signal recognition part 98.9 6.7E-09 2.3E-13 110.0 11.0 107 193-307 184-310 (504)
204 2qag_B Septin-6, protein NEDD5 98.8 1.2E-08 4.2E-13 105.4 12.0 67 219-291 151-217 (427)
205 3h2y_A GTPase family protein; 98.8 7.5E-11 2.6E-15 120.9 -5.8 148 105-297 160-317 (368)
206 3ec1_A YQEH GTPase; atnos1, at 98.8 1.2E-10 4.3E-15 119.4 -4.8 147 105-297 162-318 (369)
207 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.2E-08 4.1E-13 104.8 9.6 95 103-228 18-127 (392)
208 1tq4_A IIGP1, interferon-induc 98.8 6.5E-08 2.2E-12 100.0 14.3 165 105-311 69-254 (413)
209 3sop_A Neuronal-specific septi 98.7 6.7E-08 2.3E-12 94.6 13.1 63 215-280 110-173 (270)
210 1xe1_A Hypothetical protein PF 98.7 1.5E-07 5.2E-12 77.9 11.6 82 315-424 31-112 (116)
211 1u0l_A Probable GTPase ENGC; p 98.6 3.6E-08 1.2E-12 98.2 7.6 104 194-305 64-168 (301)
212 1puj_A YLQF, conserved hypothe 98.6 6.8E-08 2.3E-12 95.2 9.3 102 197-309 3-105 (282)
213 1cip_A Protein (guanine nucleo 98.5 4E-08 1.4E-12 99.8 4.5 117 192-308 192-342 (353)
214 1zcb_A G alpha I/13; GTP-bindi 98.5 8.9E-08 3.1E-12 97.6 5.0 117 192-308 200-351 (362)
215 2v3c_C SRP54, signal recogniti 98.4 1.1E-06 3.6E-11 91.7 10.4 111 193-310 181-311 (432)
216 3cnl_A YLQF, putative uncharac 98.3 3.6E-07 1.2E-11 89.0 5.7 94 201-308 5-99 (262)
217 2xtz_A Guanine nucleotide-bind 98.3 2.9E-07 1E-11 93.4 4.2 115 193-308 183-343 (354)
218 2yv5_A YJEQ protein; hydrolase 98.2 2.5E-06 8.6E-11 84.8 9.5 89 212-305 75-164 (302)
219 3ec1_A YQEH GTPase; atnos1, at 98.2 1.9E-06 6.3E-11 88.2 8.4 109 195-308 51-160 (369)
220 1azs_C GS-alpha; complex (lyas 98.2 8.9E-07 3E-11 91.1 6.0 116 193-308 217-383 (402)
221 3ohm_A Guanine nucleotide-bind 98.2 1.6E-06 5.5E-11 86.8 7.7 117 192-308 166-316 (327)
222 4fid_A G protein alpha subunit 98.2 2.9E-06 1E-10 85.2 8.3 116 192-307 160-325 (340)
223 3dm5_A SRP54, signal recogniti 98.2 1.9E-06 6.5E-11 89.5 6.9 91 193-298 183-279 (443)
224 1puj_A YLQF, conserved hypothe 98.2 1.2E-06 4.3E-11 86.1 5.2 27 103-129 118-144 (282)
225 3h2y_A GTPase family protein; 98.1 2.8E-06 9.6E-11 86.8 7.1 101 203-308 56-158 (368)
226 1f5n_A Interferon-induced guan 98.1 1.6E-06 5.4E-11 93.4 5.3 27 103-129 36-62 (592)
227 3l82_B F-box only protein 4; T 98.0 8.2E-06 2.8E-10 75.5 7.1 112 194-309 97-222 (227)
228 3kl4_A SRP54, signal recogniti 98.0 4.9E-06 1.7E-10 86.4 6.1 89 193-297 180-277 (433)
229 1j8m_F SRP54, signal recogniti 97.9 2.5E-05 8.5E-10 77.3 9.5 93 193-300 181-281 (297)
230 1t9h_A YLOQ, probable GTPase E 97.8 2.3E-05 7.7E-10 77.8 6.3 88 213-304 83-171 (307)
231 3cnl_A YLQF, putative uncharac 97.8 9.7E-06 3.3E-10 78.8 3.5 24 106-129 100-123 (262)
232 3szr_A Interferon-induced GTP- 97.7 0.00011 3.8E-09 79.9 11.2 66 193-262 147-229 (608)
233 3l2o_B F-box only protein 4; s 97.6 5.6E-05 1.9E-09 73.4 5.9 104 202-309 196-307 (312)
234 2rcn_A Probable GTPase ENGC; Y 97.6 0.00031 1.1E-08 71.0 10.7 86 213-304 127-213 (358)
235 3e70_C DPA, signal recognition 97.5 4.4E-05 1.5E-09 76.5 4.0 91 193-299 212-309 (328)
236 2xxa_A Signal recognition part 97.3 0.00017 5.8E-09 75.0 5.5 64 193-261 184-254 (433)
237 1d1n_A Initiation factor 2; be 97.2 0.00045 1.5E-08 55.5 5.8 80 321-423 9-88 (99)
238 2crv_A IF-2MT, translation ini 97.1 0.002 6.9E-08 53.6 8.7 81 320-423 12-96 (120)
239 2yhs_A FTSY, cell division pro 97.0 0.0016 5.5E-08 68.2 8.7 25 104-128 292-316 (503)
240 1zo1_I IF2, translation initia 96.9 0.0037 1.3E-07 66.0 10.5 102 298-423 389-490 (501)
241 2px0_A Flagellar biosynthesis 96.8 0.001 3.5E-08 65.6 5.6 24 105-128 105-128 (296)
242 3q5d_A Atlastin-1; G protein, 96.8 0.003 1E-07 65.7 8.8 26 103-128 65-90 (447)
243 1zu4_A FTSY; GTPase, signal re 96.8 0.003 1E-07 62.9 8.5 25 103-127 103-127 (320)
244 1rj9_A FTSY, signal recognitio 96.7 0.0015 5.1E-08 64.7 5.5 25 104-128 101-125 (304)
245 1vma_A Cell division protein F 96.6 0.0021 7.1E-08 63.6 5.6 24 104-127 103-126 (306)
246 4dzz_A Plasmid partitioning pr 96.4 0.0064 2.2E-07 55.8 7.5 64 193-260 76-143 (206)
247 3izy_P Translation initiation 96.4 0.016 5.4E-07 61.7 11.3 107 297-423 427-533 (537)
248 2ffh_A Protein (FFH); SRP54, s 96.3 0.003 1E-07 65.3 5.0 64 193-261 181-251 (425)
249 1ye8_A Protein THEP1, hypothet 95.7 0.0046 1.6E-07 56.0 2.8 24 106-129 1-24 (178)
250 1g7s_A Translation initiation 95.4 0.047 1.6E-06 58.9 9.9 82 317-423 462-546 (594)
251 1lvg_A Guanylate kinase, GMP k 95.3 0.0069 2.4E-07 55.7 2.4 23 106-128 5-27 (198)
252 2rcn_A Probable GTPase ENGC; Y 95.0 0.011 3.9E-07 59.5 3.4 24 106-129 216-239 (358)
253 3asz_A Uridine kinase; cytidin 95.0 0.011 3.8E-07 54.5 3.0 26 103-128 4-29 (211)
254 1znw_A Guanylate kinase, GMP k 95.0 0.01 3.4E-07 54.9 2.6 24 106-129 21-44 (207)
255 3c8u_A Fructokinase; YP_612366 95.0 0.011 3.9E-07 54.6 2.9 26 103-128 20-45 (208)
256 1kgd_A CASK, peripheral plasma 95.0 0.012 4.1E-07 53.1 3.0 23 106-128 6-28 (180)
257 1zp6_A Hypothetical protein AT 94.9 0.014 4.9E-07 52.7 3.5 24 105-128 9-32 (191)
258 3tif_A Uncharacterized ABC tra 94.7 0.014 4.6E-07 55.4 2.9 24 106-129 32-55 (235)
259 3tr0_A Guanylate kinase, GMP k 94.7 0.015 5.1E-07 53.2 3.1 23 106-128 8-30 (205)
260 3a00_A Guanylate kinase, GMP k 94.6 0.014 4.7E-07 52.9 2.6 23 107-129 3-25 (186)
261 1z6g_A Guanylate kinase; struc 94.6 0.014 4.8E-07 54.5 2.6 24 106-129 24-47 (218)
262 2pcj_A ABC transporter, lipopr 94.6 0.014 4.9E-07 54.8 2.7 24 106-129 31-54 (224)
263 1t9h_A YLOQ, probable GTPase E 94.6 0.008 2.7E-07 59.4 0.9 26 104-129 172-197 (307)
264 2onk_A Molybdate/tungstate ABC 94.5 0.018 6.2E-07 54.7 3.2 23 107-129 26-48 (240)
265 4eun_A Thermoresistant glucoki 94.4 0.02 6.7E-07 52.5 3.0 25 103-127 27-51 (200)
266 1sgw_A Putative ABC transporte 94.4 0.019 6.5E-07 53.6 2.8 23 107-129 37-59 (214)
267 2cbz_A Multidrug resistance-as 94.3 0.02 7E-07 54.2 3.1 24 106-129 32-55 (237)
268 1s96_A Guanylate kinase, GMP k 94.3 0.02 6.8E-07 53.6 3.0 25 105-129 16-40 (219)
269 1g6h_A High-affinity branched- 94.3 0.019 6.5E-07 55.1 2.9 24 106-129 34-57 (257)
270 1htw_A HI0065; nucleotide-bind 94.3 0.024 8.3E-07 50.1 3.3 25 104-128 32-56 (158)
271 4g1u_C Hemin import ATP-bindin 94.3 0.019 6.6E-07 55.4 2.9 24 106-129 38-61 (266)
272 1b0u_A Histidine permease; ABC 94.3 0.019 6.6E-07 55.3 2.8 24 106-129 33-56 (262)
273 3end_A Light-independent proto 94.3 0.16 5.4E-06 49.7 9.6 65 193-259 157-225 (307)
274 2pze_A Cystic fibrosis transme 94.3 0.022 7.4E-07 53.7 3.1 24 106-129 35-58 (229)
275 3gfo_A Cobalt import ATP-bindi 94.3 0.02 6.8E-07 55.6 2.8 24 106-129 35-58 (275)
276 2d2e_A SUFC protein; ABC-ATPas 94.2 0.023 7.8E-07 54.3 3.2 23 106-128 30-52 (250)
277 2j41_A Guanylate kinase; GMP, 94.2 0.023 7.8E-07 52.0 3.1 25 105-129 6-30 (207)
278 3ney_A 55 kDa erythrocyte memb 94.2 0.028 9.7E-07 51.6 3.7 25 104-128 18-42 (197)
279 1u0l_A Probable GTPase ENGC; p 94.2 0.021 7.1E-07 56.2 3.0 25 105-129 169-193 (301)
280 2ff7_A Alpha-hemolysin translo 94.2 0.023 7.8E-07 54.3 3.1 24 106-129 36-59 (247)
281 1ji0_A ABC transporter; ATP bi 94.2 0.021 7.2E-07 54.2 2.9 24 106-129 33-56 (240)
282 4gp7_A Metallophosphoesterase; 94.2 0.021 7.3E-07 51.0 2.7 22 106-127 10-31 (171)
283 2olj_A Amino acid ABC transpor 94.1 0.022 7.6E-07 54.9 2.8 24 106-129 51-74 (263)
284 2ghi_A Transport protein; mult 94.1 0.025 8.4E-07 54.5 3.1 26 104-129 45-70 (260)
285 1mv5_A LMRA, multidrug resista 94.1 0.027 9.3E-07 53.5 3.4 26 104-129 27-52 (243)
286 1vpl_A ABC transporter, ATP-bi 94.1 0.023 7.8E-07 54.6 2.8 24 106-129 42-65 (256)
287 2qi9_C Vitamin B12 import ATP- 94.0 0.026 8.8E-07 54.0 3.1 24 106-129 27-50 (249)
288 2zu0_C Probable ATP-dependent 94.0 0.029 9.9E-07 54.2 3.4 23 106-128 47-69 (267)
289 4ido_A Atlastin-1; GTPase, GTP 94.0 0.3 1E-05 50.4 11.1 24 103-126 65-88 (457)
290 3b85_A Phosphate starvation-in 93.9 0.021 7.1E-07 53.0 2.2 22 107-128 24-45 (208)
291 2ixe_A Antigen peptide transpo 93.9 0.028 9.5E-07 54.5 3.1 24 106-129 46-69 (271)
292 2v9p_A Replication protein E1; 93.9 0.027 9.3E-07 55.5 3.0 26 103-128 124-149 (305)
293 2yz2_A Putative ABC transporte 93.9 0.026 9E-07 54.5 2.9 24 106-129 34-57 (266)
294 2ihy_A ABC transporter, ATP-bi 93.9 0.028 9.7E-07 54.6 3.1 24 106-129 48-71 (279)
295 2nq2_C Hypothetical ABC transp 93.8 0.027 9.2E-07 54.0 2.8 24 106-129 32-55 (253)
296 1knq_A Gluconate kinase; ALFA/ 93.8 0.035 1.2E-06 49.4 3.4 23 105-127 8-30 (175)
297 1kag_A SKI, shikimate kinase I 93.8 0.027 9.2E-07 50.0 2.5 23 106-128 5-27 (173)
298 2yv5_A YJEQ protein; hydrolase 93.7 0.033 1.1E-06 54.8 3.3 25 104-129 164-188 (302)
299 3aez_A Pantothenate kinase; tr 93.6 0.035 1.2E-06 54.9 3.2 26 103-128 88-113 (312)
300 3tau_A Guanylate kinase, GMP k 93.6 0.041 1.4E-06 50.8 3.5 25 105-129 8-32 (208)
301 2i3b_A HCR-ntpase, human cance 93.5 0.03 1E-06 51.1 2.4 22 107-128 3-24 (189)
302 2bbw_A Adenylate kinase 4, AK4 93.5 0.041 1.4E-06 52.2 3.4 24 106-129 28-54 (246)
303 2pjz_A Hypothetical protein ST 93.5 0.037 1.3E-06 53.3 3.1 24 106-129 31-54 (263)
304 2eyu_A Twitching motility prot 93.5 0.04 1.4E-06 53.0 3.3 25 104-128 24-48 (261)
305 2bdt_A BH3686; alpha-beta prot 93.4 0.041 1.4E-06 49.7 3.1 21 107-127 4-24 (189)
306 3nh6_A ATP-binding cassette SU 93.2 0.032 1.1E-06 55.0 2.3 27 103-129 78-104 (306)
307 2f1r_A Molybdopterin-guanine d 93.2 0.022 7.7E-07 51.1 1.1 22 107-128 4-25 (171)
308 3tui_C Methionine import ATP-b 93.2 0.042 1.4E-06 55.4 3.2 24 106-129 55-78 (366)
309 2bbs_A Cystic fibrosis transme 93.2 0.04 1.4E-06 53.9 2.9 26 104-129 63-88 (290)
310 2jeo_A Uridine-cytidine kinase 93.2 0.045 1.5E-06 51.9 3.2 24 104-127 24-47 (245)
311 3uie_A Adenylyl-sulfate kinase 93.2 0.049 1.7E-06 49.8 3.3 26 103-128 23-48 (200)
312 2qor_A Guanylate kinase; phosp 93.1 0.046 1.6E-06 50.2 3.0 24 105-128 12-35 (204)
313 1jjv_A Dephospho-COA kinase; P 93.0 0.059 2E-06 49.4 3.6 22 106-127 3-24 (206)
314 3lnc_A Guanylate kinase, GMP k 92.9 0.035 1.2E-06 52.0 2.0 25 105-129 27-52 (231)
315 2qt1_A Nicotinamide riboside k 92.9 0.064 2.2E-06 49.2 3.7 25 104-128 20-44 (207)
316 3lw7_A Adenylate kinase relate 92.9 0.055 1.9E-06 47.6 3.1 20 106-125 2-21 (179)
317 3fvq_A Fe(3+) IONS import ATP- 92.9 0.049 1.7E-06 54.9 3.0 24 106-129 31-54 (359)
318 4a74_A DNA repair and recombin 92.9 0.042 1.4E-06 51.0 2.4 23 106-128 26-48 (231)
319 1cke_A CK, MSSA, protein (cyti 92.9 0.048 1.6E-06 50.7 2.8 22 106-127 6-27 (227)
320 1z47_A CYSA, putative ABC-tran 92.9 0.052 1.8E-06 54.6 3.2 24 106-129 42-65 (355)
321 2if2_A Dephospho-COA kinase; a 92.8 0.047 1.6E-06 49.9 2.6 22 106-127 2-23 (204)
322 3kb2_A SPBC2 prophage-derived 92.8 0.058 2E-06 47.5 3.1 22 106-127 2-23 (173)
323 2yyz_A Sugar ABC transporter, 92.8 0.054 1.8E-06 54.6 3.2 24 106-129 30-53 (359)
324 1np6_A Molybdopterin-guanine d 92.8 0.057 2E-06 48.5 3.0 23 106-128 7-29 (174)
325 3rlf_A Maltose/maltodextrin im 92.6 0.057 1.9E-06 54.8 3.2 24 106-129 30-53 (381)
326 2it1_A 362AA long hypothetical 92.6 0.057 1.9E-06 54.5 3.2 24 106-129 30-53 (362)
327 1lw7_A Transcriptional regulat 92.6 0.047 1.6E-06 55.2 2.6 25 105-129 170-194 (365)
328 1g29_1 MALK, maltose transport 92.6 0.059 2E-06 54.6 3.2 23 107-129 31-53 (372)
329 2gza_A Type IV secretion syste 92.6 0.051 1.8E-06 54.9 2.8 26 104-129 174-199 (361)
330 1v43_A Sugar-binding transport 92.5 0.061 2.1E-06 54.5 3.2 24 106-129 38-61 (372)
331 3cm0_A Adenylate kinase; ATP-b 92.5 0.079 2.7E-06 47.4 3.7 22 105-126 4-25 (186)
332 3vaa_A Shikimate kinase, SK; s 92.5 0.072 2.5E-06 48.6 3.4 23 105-127 25-47 (199)
333 2pt7_A CAG-ALFA; ATPase, prote 92.5 0.044 1.5E-06 54.7 2.1 25 105-129 171-195 (330)
334 2ehv_A Hypothetical protein PH 92.5 0.062 2.1E-06 50.6 3.0 21 106-126 31-51 (251)
335 2jaq_A Deoxyguanosine kinase; 92.4 0.071 2.4E-06 48.4 3.3 21 107-127 2-22 (205)
336 4e22_A Cytidylate kinase; P-lo 92.4 0.077 2.6E-06 50.6 3.6 22 105-126 27-48 (252)
337 1ex7_A Guanylate kinase; subst 92.4 0.069 2.4E-06 48.5 3.0 21 108-128 4-24 (186)
338 1bif_A 6-phosphofructo-2-kinas 92.3 0.24 8.3E-06 51.7 7.6 24 104-127 38-61 (469)
339 3d31_A Sulfate/molybdate ABC t 92.3 0.052 1.8E-06 54.5 2.3 24 106-129 27-50 (348)
340 1ly1_A Polynucleotide kinase; 92.3 0.083 2.8E-06 46.9 3.5 22 106-127 3-24 (181)
341 3t61_A Gluconokinase; PSI-biol 92.2 0.073 2.5E-06 48.6 3.1 22 106-127 19-40 (202)
342 1sq5_A Pantothenate kinase; P- 92.2 0.067 2.3E-06 52.7 3.1 26 103-128 78-103 (308)
343 1y63_A LMAJ004144AAA protein; 92.2 0.086 3E-06 47.4 3.6 23 105-127 10-32 (184)
344 3jvv_A Twitching mobility prot 92.2 0.062 2.1E-06 54.1 2.8 23 106-128 124-146 (356)
345 3fb4_A Adenylate kinase; psych 92.2 0.076 2.6E-06 49.0 3.1 21 106-126 1-21 (216)
346 3ec2_A DNA replication protein 92.1 0.06 2E-06 48.2 2.4 24 105-128 38-61 (180)
347 3kjh_A CO dehydrogenase/acetyl 92.1 0.089 3E-06 49.4 3.7 65 192-259 131-195 (254)
348 1hyq_A MIND, cell division inh 92.1 0.17 5.6E-06 48.2 5.6 67 193-262 111-177 (263)
349 1rz3_A Hypothetical protein rb 92.1 0.077 2.6E-06 48.6 3.1 24 104-127 21-44 (201)
350 3dl0_A Adenylate kinase; phosp 92.0 0.082 2.8E-06 48.8 3.1 21 106-126 1-21 (216)
351 2rhm_A Putative kinase; P-loop 91.9 0.098 3.3E-06 47.0 3.6 23 105-127 5-27 (193)
352 1aky_A Adenylate kinase; ATP:A 91.9 0.093 3.2E-06 48.6 3.4 24 104-127 3-26 (220)
353 1kht_A Adenylate kinase; phosp 91.8 0.095 3.2E-06 47.0 3.3 22 106-127 4-25 (192)
354 1oxx_K GLCV, glucose, ABC tran 91.8 0.051 1.7E-06 54.7 1.6 24 106-129 32-55 (353)
355 2kjq_A DNAA-related protein; s 91.8 0.063 2.1E-06 46.8 2.0 23 106-128 37-59 (149)
356 3gd7_A Fusion complex of cysti 91.7 0.081 2.8E-06 53.9 3.0 24 106-129 48-71 (390)
357 1g3q_A MIND ATPase, cell divis 91.7 0.14 4.8E-06 47.8 4.5 67 192-261 111-177 (237)
358 1nn5_A Similar to deoxythymidy 91.7 0.095 3.2E-06 48.1 3.2 23 104-126 8-30 (215)
359 3zvl_A Bifunctional polynucleo 91.7 0.2 7E-06 51.4 6.1 24 104-127 257-280 (416)
360 1nks_A Adenylate kinase; therm 91.7 0.099 3.4E-06 46.9 3.3 22 106-127 2-23 (194)
361 3tqc_A Pantothenate kinase; bi 91.6 0.097 3.3E-06 51.9 3.4 26 103-128 90-115 (321)
362 2v54_A DTMP kinase, thymidylat 91.6 0.1 3.5E-06 47.4 3.4 24 105-128 4-27 (204)
363 2oap_1 GSPE-2, type II secreti 91.6 0.07 2.4E-06 56.5 2.5 25 105-129 260-284 (511)
364 2ewv_A Twitching motility prot 91.6 0.089 3.1E-06 53.3 3.2 26 103-128 134-159 (372)
365 2plr_A DTMP kinase, probable t 91.5 0.11 3.7E-06 47.5 3.4 22 106-127 5-26 (213)
366 2yvu_A Probable adenylyl-sulfa 91.5 0.12 4.2E-06 46.3 3.7 24 104-127 12-35 (186)
367 2vp4_A Deoxynucleoside kinase; 91.5 0.079 2.7E-06 49.7 2.5 26 103-128 18-43 (230)
368 1xjc_A MOBB protein homolog; s 91.5 0.11 3.8E-06 46.3 3.3 23 106-128 5-27 (169)
369 3trf_A Shikimate kinase, SK; a 91.5 0.11 3.7E-06 46.5 3.3 21 106-126 6-26 (185)
370 1qhx_A CPT, protein (chloramph 91.5 0.1 3.6E-06 46.3 3.2 22 106-127 4-25 (178)
371 1qf9_A UMP/CMP kinase, protein 91.2 0.13 4.6E-06 46.0 3.7 21 106-126 7-27 (194)
372 2pez_A Bifunctional 3'-phospho 91.2 0.12 4.2E-06 46.0 3.4 23 105-127 5-27 (179)
373 2ph1_A Nucleotide-binding prot 91.2 0.28 9.6E-06 46.8 6.2 67 192-259 128-194 (262)
374 2pt5_A Shikimate kinase, SK; a 91.2 0.11 3.9E-06 45.5 3.1 20 107-126 2-21 (168)
375 1uf9_A TT1252 protein; P-loop, 91.2 0.13 4.3E-06 46.7 3.5 25 104-128 7-31 (203)
376 1tev_A UMP-CMP kinase; ploop, 91.1 0.13 4.4E-06 46.2 3.5 21 106-126 4-24 (196)
377 1odf_A YGR205W, hypothetical 3 91.1 0.14 4.8E-06 49.9 3.9 25 104-128 30-54 (290)
378 2c95_A Adenylate kinase 1; tra 91.1 0.13 4.3E-06 46.4 3.3 22 105-126 9-30 (196)
379 2wwf_A Thymidilate kinase, put 91.0 0.12 4.1E-06 47.3 3.1 23 105-127 10-32 (212)
380 3tlx_A Adenylate kinase 2; str 90.9 0.15 5E-06 48.3 3.7 24 103-126 27-50 (243)
381 1yqt_A RNAse L inhibitor; ATP- 90.8 0.12 4.1E-06 55.1 3.4 24 106-129 48-71 (538)
382 1e4v_A Adenylate kinase; trans 90.8 0.12 4.3E-06 47.5 3.1 22 106-127 1-22 (214)
383 2cdn_A Adenylate kinase; phosp 90.8 0.16 5.4E-06 46.3 3.7 23 104-126 19-41 (201)
384 3b9q_A Chloroplast SRP recepto 90.8 0.13 4.4E-06 50.6 3.3 25 104-128 99-123 (302)
385 1nij_A Hypothetical protein YJ 90.7 0.1 3.6E-06 51.5 2.6 23 106-128 5-27 (318)
386 2npi_A Protein CLP1; CLP1-PCF1 90.6 0.1 3.5E-06 54.4 2.5 27 103-129 136-162 (460)
387 1ukz_A Uridylate kinase; trans 90.6 0.18 6.1E-06 45.9 3.9 24 104-127 14-37 (203)
388 2pbr_A DTMP kinase, thymidylat 90.6 0.14 4.8E-06 46.0 3.1 21 107-127 2-22 (195)
389 1zd8_A GTP:AMP phosphotransfer 90.5 0.14 4.7E-06 47.8 3.1 22 105-126 7-28 (227)
390 1vht_A Dephospho-COA kinase; s 90.5 0.16 5.4E-06 46.9 3.5 23 105-127 4-26 (218)
391 3kta_A Chromosome segregation 90.5 0.13 4.4E-06 45.9 2.9 21 107-127 28-48 (182)
392 1p9r_A General secretion pathw 90.5 0.13 4.5E-06 52.9 3.3 25 104-128 166-190 (418)
393 1via_A Shikimate kinase; struc 90.5 0.13 4.5E-06 45.7 2.8 21 107-127 6-26 (175)
394 3iij_A Coilin-interacting nucl 90.4 0.14 4.8E-06 45.7 3.0 21 106-126 12-32 (180)
395 3ozx_A RNAse L inhibitor; ATP 90.4 0.12 4.1E-06 55.1 2.8 24 106-129 26-49 (538)
396 3cwq_A Para family chromosome 90.4 0.26 8.8E-06 45.4 4.8 66 193-261 68-134 (209)
397 2x8a_A Nuclear valosin-contain 90.2 0.12 4.3E-06 49.8 2.6 21 108-128 47-67 (274)
398 3euj_A Chromosome partition pr 90.1 0.12 4.2E-06 54.0 2.6 21 107-127 31-51 (483)
399 3j16_B RLI1P; ribosome recycli 89.9 0.15 5.1E-06 55.1 3.2 24 106-129 104-127 (608)
400 1zak_A Adenylate kinase; ATP:A 89.9 0.16 5.3E-06 47.1 2.9 21 106-126 6-26 (222)
401 2w0m_A SSO2452; RECA, SSPF, un 89.8 0.14 4.9E-06 47.3 2.6 23 106-128 24-46 (235)
402 1gtv_A TMK, thymidylate kinase 89.8 0.09 3.1E-06 48.2 1.2 21 107-127 2-22 (214)
403 3be4_A Adenylate kinase; malar 89.8 0.17 5.8E-06 46.8 3.1 22 105-126 5-26 (217)
404 2z0h_A DTMP kinase, thymidylat 89.8 0.18 6.1E-06 45.4 3.1 21 107-127 2-22 (197)
405 2obl_A ESCN; ATPase, hydrolase 89.7 0.14 4.9E-06 51.3 2.6 25 104-128 70-94 (347)
406 3b5x_A Lipid A export ATP-bind 89.7 0.17 5.9E-06 54.4 3.4 27 103-129 367-393 (582)
407 2xb4_A Adenylate kinase; ATP-b 89.6 0.19 6.4E-06 46.8 3.3 20 107-126 2-21 (223)
408 2bwj_A Adenylate kinase 5; pho 89.6 0.18 6.2E-06 45.5 3.1 22 106-127 13-34 (199)
409 3la6_A Tyrosine-protein kinase 89.6 0.42 1.4E-05 46.4 5.9 67 193-261 202-268 (286)
410 3sr0_A Adenylate kinase; phosp 89.6 0.2 6.8E-06 46.2 3.3 22 106-127 1-22 (206)
411 3b60_A Lipid A export ATP-bind 89.6 0.16 5.4E-06 54.7 3.0 27 103-129 367-393 (582)
412 1cr0_A DNA primase/helicase; R 89.5 0.14 4.9E-06 49.8 2.4 23 106-128 36-58 (296)
413 1zuh_A Shikimate kinase; alpha 89.5 0.2 6.7E-06 44.1 3.1 21 106-126 8-28 (168)
414 1gvn_B Zeta; postsegregational 89.5 0.2 6.8E-06 48.7 3.4 23 105-127 33-55 (287)
415 1ixz_A ATP-dependent metallopr 89.5 0.16 5.3E-06 48.2 2.6 22 107-128 51-72 (254)
416 2vli_A Antibiotic resistance p 89.4 0.14 4.9E-06 45.5 2.2 21 106-126 6-26 (183)
417 3bk7_A ABC transporter ATP-bin 89.4 0.17 5.7E-06 54.8 3.1 24 106-129 118-141 (607)
418 2grj_A Dephospho-COA kinase; T 89.4 0.22 7.5E-06 45.4 3.4 24 103-126 10-33 (192)
419 1uj2_A Uridine-cytidine kinase 89.4 0.21 7.2E-06 47.4 3.5 24 104-127 21-44 (252)
420 3a4m_A L-seryl-tRNA(SEC) kinas 89.4 0.21 7.2E-06 47.7 3.4 23 105-127 4-26 (260)
421 1m7g_A Adenylylsulfate kinase; 89.2 0.24 8.2E-06 45.5 3.6 25 103-127 23-47 (211)
422 2p5t_B PEZT; postsegregational 89.2 0.16 5.6E-06 48.3 2.5 24 104-127 31-54 (253)
423 1f2t_A RAD50 ABC-ATPase; DNA d 89.2 0.21 7.2E-06 43.4 3.0 19 108-126 26-44 (149)
424 2og2_A Putative signal recogni 89.2 0.2 6.8E-06 50.4 3.2 25 104-128 156-180 (359)
425 1ak2_A Adenylate kinase isoenz 89.1 0.24 8.1E-06 46.4 3.5 23 105-127 16-38 (233)
426 1yqt_A RNAse L inhibitor; ATP- 89.1 0.2 7E-06 53.3 3.4 24 106-129 313-336 (538)
427 1e6c_A Shikimate kinase; phosp 89.1 0.19 6.4E-06 44.3 2.7 21 106-126 3-23 (173)
428 3ea0_A ATPase, para family; al 89.0 0.28 9.5E-06 45.9 3.9 67 192-261 118-186 (245)
429 2yl4_A ATP-binding cassette SU 88.9 0.16 5.3E-06 54.9 2.4 27 103-129 368-394 (595)
430 3ozx_A RNAse L inhibitor; ATP 88.8 0.19 6.4E-06 53.6 2.8 24 106-129 295-318 (538)
431 3nwj_A ATSK2; P loop, shikimat 88.7 0.21 7.1E-06 47.6 2.9 22 106-127 49-70 (250)
432 2iyv_A Shikimate kinase, SK; t 88.7 0.2 6.7E-06 44.8 2.6 20 107-126 4-23 (184)
433 3qf4_B Uncharacterized ABC tra 88.7 0.17 6E-06 54.6 2.6 27 103-129 379-405 (598)
434 4eaq_A DTMP kinase, thymidylat 88.6 0.29 9.8E-06 45.9 3.7 25 104-128 25-49 (229)
435 1svm_A Large T antigen; AAA+ f 88.6 0.22 7.6E-06 50.4 3.1 26 103-128 167-192 (377)
436 3bk7_A ABC transporter ATP-bin 88.5 0.23 7.9E-06 53.6 3.4 24 106-129 383-406 (607)
437 1iy2_A ATP-dependent metallopr 88.4 0.2 6.9E-06 48.2 2.6 22 107-128 75-96 (278)
438 4a82_A Cystic fibrosis transme 88.4 0.16 5.4E-06 54.7 2.0 27 103-129 365-391 (578)
439 2ze6_A Isopentenyl transferase 88.4 0.24 8.1E-06 47.2 3.0 21 107-127 3-23 (253)
440 3b9p_A CG5977-PA, isoform A; A 88.3 0.8 2.7E-05 44.2 6.9 24 105-128 54-77 (297)
441 2dpy_A FLII, flagellum-specifi 88.3 0.2 6.8E-06 51.9 2.6 26 103-128 155-180 (438)
442 3r20_A Cytidylate kinase; stru 88.2 0.26 9E-06 46.4 3.2 22 105-126 9-30 (233)
443 1in4_A RUVB, holliday junction 88.1 0.21 7.3E-06 49.6 2.6 23 106-128 52-74 (334)
444 2cvh_A DNA repair and recombin 88.0 0.23 7.9E-06 45.5 2.6 22 106-127 21-42 (220)
445 3h4m_A Proteasome-activating n 88.0 0.7 2.4E-05 44.2 6.2 25 104-128 50-74 (285)
446 3j16_B RLI1P; ribosome recycli 87.9 0.25 8.5E-06 53.4 3.2 23 107-129 380-402 (608)
447 1n0w_A DNA repair protein RAD5 87.9 0.23 7.9E-06 46.3 2.6 22 106-127 25-46 (243)
448 3bfv_A CAPA1, CAPB2, membrane 87.8 0.53 1.8E-05 45.3 5.1 66 193-260 192-257 (271)
449 3qf4_A ABC transporter, ATP-bi 87.8 0.19 6.5E-06 54.2 2.1 27 103-129 367-393 (587)
450 2f6r_A COA synthase, bifunctio 87.8 0.3 1E-05 47.3 3.4 23 104-126 74-96 (281)
451 3cio_A ETK, tyrosine-protein k 87.6 0.88 3E-05 44.4 6.7 66 193-260 214-279 (299)
452 1jbk_A CLPB protein; beta barr 87.6 0.35 1.2E-05 42.7 3.5 23 105-127 43-65 (195)
453 1q3t_A Cytidylate kinase; nucl 87.5 0.35 1.2E-05 45.3 3.6 25 103-127 14-38 (236)
454 3qf7_A RAD50; ABC-ATPase, ATPa 87.4 0.28 9.6E-06 49.4 3.0 21 105-126 24-44 (365)
455 3gmt_A Adenylate kinase; ssgci 86.9 0.37 1.2E-05 45.2 3.3 24 104-127 7-30 (230)
456 1qhl_A Protein (cell division 86.8 0.064 2.2E-06 50.4 -2.0 21 108-128 30-50 (227)
457 4b4t_J 26S protease regulatory 86.5 4.5 0.00015 41.1 11.3 26 103-128 180-205 (405)
458 1zcb_A G alpha I/13; GTP-bindi 86.4 0.41 1.4E-05 48.2 3.6 23 103-125 31-53 (362)
459 3cr8_A Sulfate adenylyltranfer 86.1 0.26 8.9E-06 52.6 2.0 25 104-128 368-392 (552)
460 2iw3_A Elongation factor 3A; a 86.0 0.25 8.4E-06 56.1 1.8 25 105-129 699-723 (986)
461 1nlf_A Regulatory protein REPA 85.8 0.33 1.1E-05 46.8 2.4 22 106-127 31-52 (279)
462 3ake_A Cytidylate kinase; CMP 85.8 0.45 1.6E-05 43.1 3.3 21 107-127 4-24 (208)
463 3umf_A Adenylate kinase; rossm 85.8 0.54 1.8E-05 43.7 3.8 22 106-127 30-51 (217)
464 1wcv_1 SOJ, segregation protei 85.7 1.6 5.5E-05 41.2 7.2 80 193-276 112-197 (257)
465 1xwi_A SKD1 protein; VPS4B, AA 85.6 1.3 4.5E-05 43.6 6.8 25 104-128 44-68 (322)
466 1lv7_A FTSH; alpha/beta domain 85.4 0.51 1.8E-05 44.6 3.5 23 106-128 46-68 (257)
467 1ltq_A Polynucleotide kinase; 85.2 0.5 1.7E-05 45.8 3.4 22 106-127 3-24 (301)
468 2w58_A DNAI, primosome compone 85.1 0.52 1.8E-05 42.6 3.3 22 106-127 55-76 (202)
469 1p5z_B DCK, deoxycytidine kina 84.8 0.37 1.3E-05 46.0 2.2 26 103-128 22-47 (263)
470 4f4c_A Multidrug resistance pr 84.7 0.31 1E-05 57.7 1.9 27 103-129 1103-1129(1321)
471 3bos_A Putative DNA replicatio 84.7 0.56 1.9E-05 43.2 3.4 23 105-127 52-74 (242)
472 2p65_A Hypothetical protein PF 84.6 0.46 1.6E-05 41.8 2.6 23 105-127 43-65 (187)
473 4b4t_L 26S protease subunit RP 84.5 1.1 3.9E-05 46.1 5.9 26 103-128 213-238 (437)
474 3qks_A DNA double-strand break 84.5 0.52 1.8E-05 43.1 3.0 19 108-126 26-44 (203)
475 3d8b_A Fidgetin-like protein 1 84.5 1.3 4.6E-05 44.1 6.4 25 103-127 115-139 (357)
476 3pfi_A Holliday junction ATP-d 84.5 2.7 9.2E-05 41.2 8.5 23 105-127 55-77 (338)
477 3q9l_A Septum site-determining 84.4 0.45 1.5E-05 44.9 2.6 65 192-259 113-185 (260)
478 4f4c_A Multidrug resistance pr 84.3 0.44 1.5E-05 56.4 3.0 27 103-129 442-468 (1321)
479 2iw3_A Elongation factor 3A; a 84.0 0.46 1.6E-05 53.9 2.8 24 104-127 460-483 (986)
480 2oze_A ORF delta'; para, walke 83.9 2.1 7.1E-05 41.3 7.3 67 192-261 154-226 (298)
481 1a7j_A Phosphoribulokinase; tr 83.7 0.36 1.2E-05 47.0 1.6 23 105-127 5-27 (290)
482 2ocp_A DGK, deoxyguanosine kin 83.3 0.69 2.4E-05 43.3 3.4 22 106-127 3-24 (241)
483 2qmh_A HPR kinase/phosphorylas 83.3 0.69 2.4E-05 42.3 3.2 23 106-128 35-57 (205)
484 2ga8_A Hypothetical 39.9 kDa p 83.2 0.8 2.7E-05 45.8 3.9 24 104-127 23-46 (359)
485 3vfd_A Spastin; ATPase, microt 82.9 1.8 6.2E-05 43.7 6.6 24 104-127 147-170 (389)
486 3k9g_A PF-32 protein; ssgcid, 82.8 1.2 4.1E-05 42.2 5.0 64 193-259 145-209 (267)
487 4aby_A DNA repair protein RECN 82.8 0.28 9.4E-06 50.2 0.4 24 103-127 59-82 (415)
488 3g5u_A MCG1178, multidrug resi 82.7 0.51 1.7E-05 55.7 2.6 27 103-129 414-440 (1284)
489 1pzn_A RAD51, DNA repair and r 82.3 0.56 1.9E-05 46.9 2.4 25 104-128 130-154 (349)
490 3pvs_A Replication-associated 82.1 3.5 0.00012 42.6 8.5 23 106-128 51-73 (447)
491 3n70_A Transport activator; si 81.8 0.79 2.7E-05 39.2 2.9 23 105-127 24-46 (145)
492 2dr3_A UPF0273 protein PH0284; 81.8 0.71 2.4E-05 42.9 2.9 21 106-126 24-44 (247)
493 3ux8_A Excinuclease ABC, A sub 81.8 0.47 1.6E-05 51.9 1.8 22 105-126 348-369 (670)
494 2b8t_A Thymidine kinase; deoxy 81.8 3 0.0001 38.7 7.1 21 106-126 13-33 (223)
495 2h92_A Cytidylate kinase; ross 81.7 0.74 2.5E-05 42.2 2.9 22 106-127 4-25 (219)
496 1e69_A Chromosome segregation 81.5 0.6 2E-05 46.0 2.3 20 107-126 26-45 (322)
497 3qkt_A DNA double-strand break 81.4 0.76 2.6E-05 45.6 3.0 21 105-126 24-44 (339)
498 4b4t_K 26S protease regulatory 81.2 1.8 6.3E-05 44.4 5.9 26 103-128 204-229 (428)
499 3tqf_A HPR(Ser) kinase; transf 81.2 0.84 2.9E-05 40.8 2.8 23 105-127 16-38 (181)
500 4b4t_M 26S protease regulatory 81.0 1.7 5.8E-05 44.7 5.5 26 103-128 213-238 (434)
No 1
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=8.8e-62 Score=509.31 Aligned_cols=403 Identities=49% Similarity=0.832 Sum_probs=329.3
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
+++.++|+++||+|||||||+++|+|...+++.+|.++|+|++++|....++.+++ + + .|.... .++.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~--~--~-~y~~~~-------~~~~ 72 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQ--C--G-TYTTKP-------RCPN 72 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTT--T--C-CEESSS-------BCTT
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccc--c--c-cccccc-------cccc
Confidence 45679999999999999999999999988889999999999999987766654321 0 1 122110 0000
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
.| ..+...+.++|||||||++|.+++.+++..+|++|||+|++++...+|+.+|+.+++.++++|+|+|+||+|+.+
T Consensus 73 ~g---~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 73 CL---AETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp SC---CBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSC
T ss_pred cC---cccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCC
Confidence 01 011123689999999999999999999999999999999998833899999999999899888999999999987
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCc
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRG 341 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G 341 (531)
.+...+.++++.++++++.....+++++||++|+|+++|+++|.+.++.|.++.+.|++|+|+++|+|++++.++++++|
T Consensus 150 ~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G 229 (408)
T 1s0u_A 150 EKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKG 229 (408)
T ss_dssp TTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCC
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCce
Confidence 65444566777888876555678999999999999999999999889988888899999999999999999888888999
Q ss_pred eEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccce
Q 039945 342 GVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQ 421 (531)
Q Consensus 342 ~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~ 421 (531)
+|++|+|.+|+|++||.|.++|+... ..+|...+.|..++|++|+++++++++|.|||+|++.+++++++++.++++|+
T Consensus 230 ~v~~g~v~~G~l~~gd~v~~~p~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~ 308 (408)
T 1s0u_A 230 GVLGGAIIQGVFKVGDEIEIRPGIKV-TEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGS 308 (408)
T ss_dssp CEEEEEEEESCEETTCEEEEEEEEEE-CCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTC
T ss_pred eEEEEEEEECeEecCCEEEEcCCccc-ccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCcccchhhcccee
Confidence 99999999999999999999996432 23555555667899999999999999999999999999877788999999999
Q ss_pred eeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCceEEEEeCCeeecc
Q 039945 422 VLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTS 501 (531)
Q Consensus 422 vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~~v~~~l~~p~~~~ 501 (531)
||+.++.+|++++.|+|++.||++..+.+. ....++|..|+++++|+|+.++.|+|..+..+.++|+|.+|+|++
T Consensus 309 vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~-----~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~~~~~~~~p~~~~ 383 (408)
T 1s0u_A 309 VVGLPGTLPPIREKITIRANLLDRVVGTKE-----ELKIEPLRTGEVLMLNIGTATTAGVITSARGDIADIKLKLPICAE 383 (408)
T ss_dssp EEESTTCSCCEEEEEEEEEEECCCCSSCSS-----TTCCCCCCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred EEECCCCCCceeEEEEEEEEEEeccccccc-----cccccCCCCCCEEEEEEcCCEEEEEEEEecCCEEEEEECCcEEec
Confidence 999999999999999999999987433221 112368999999999999999999999999899999999999999
Q ss_pred cCCEEEEEeccCCCceEEEEEEEe
Q 039945 502 RGEKIALSRRVEKHWRLIGWGQIQ 525 (531)
Q Consensus 502 ~g~r~ilr~~~~~~~~tig~G~I~ 525 (531)
+|+||+||++....|||||+|.|+
T Consensus 384 ~~~~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 384 IGDRVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp TTCEEEEEEECSSSEEEEEEEEEC
T ss_pred CCCEEEEEEecCCCeEEEEEEEEc
Confidence 999999999887789999999997
No 2
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=3e-61 Score=505.73 Aligned_cols=403 Identities=47% Similarity=0.826 Sum_probs=336.3
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
+++.++|+++||+|||||||+++|+|...+++.+|.++|+|++++|....++.+++ ++ .|... ..++.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~--~~---~y~~~-------~~~~~ 74 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPN--CG---RYSTS-------PVCPY 74 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTT--TC---CEESS-------SBCTT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccc--cc---ccccc-------ccccc
Confidence 45679999999999999999999999988888999999999999987766554321 00 12110 00000
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
.| . .+.....++|||||||++|.+++.+++..+|++|||+|++++...+|+.+|+.++..++++|+|+|+||+|+.+
T Consensus 75 ~g--~-~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 75 CG--H-ETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp TC--C-BCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred cC--c-ccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC
Confidence 01 0 01122689999999999999999999999999999999998833899999999999899888999999999998
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCc
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRG 341 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G 341 (531)
.+...+.++++.+++++......+++++||++|+|+++|+++|.+.+|.|.++.+.|++++|+++|++++++..+++++|
T Consensus 152 ~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G 231 (410)
T 1kk1_A 152 KEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVG 231 (410)
T ss_dssp HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCC
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCce
Confidence 77666777888888876545678999999999999999999999889988888899999999999999999888889999
Q ss_pred eEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccce
Q 039945 342 GVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQ 421 (531)
Q Consensus 342 ~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~ 421 (531)
+|++|+|.+|+|++||.|.++|+.... .+|...+.|..++|++|+.++.++++|.|||+|++.+++++++++.++.+|+
T Consensus 232 ~v~~g~v~~G~l~~gd~v~~~p~~~~~-~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~ 310 (410)
T 1kk1_A 232 GVLDGSIVQGKLKVGDEIEIRPGVPYE-EHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGN 310 (410)
T ss_dssp CEEEEEEEESCEETTCEEEEEEEEEEE-ETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTC
T ss_pred EEEEEEEEeCeEeeCCEEEECCCCccc-cccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCcccchhhcccee
Confidence 999999999999999999999964321 2444445566789999999999999999999999999887788889999999
Q ss_pred eeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCceEEEEeCCeeecc
Q 039945 422 VLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTS 501 (531)
Q Consensus 422 vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~~v~~~l~~p~~~~ 501 (531)
||+.++.+|.+++.|+|++.||++..+.+. ....++|..|+++++|+|+.++.|+|..+..+.++|+|.+|+|++
T Consensus 311 vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~-----~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~~~l~~~~p~~~~ 385 (410)
T 1kk1_A 311 VVGKPGKLPPVWDSLRLEVHLLERVVGTEQ-----ELKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAE 385 (410)
T ss_dssp EEECTTCSCCEEEEEEEEEEECCCCC--CC-----CCSCCCCCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred EEecCCCCCceeEEEEEEEEEEeccccccc-----ccccccCCCCCEEEEEEcCCEEeEEEEEecCCEEEEEeCCcEEec
Confidence 999999999999999999999987433221 112368999999999999999999999999899999999999999
Q ss_pred cCCEEEEEeccCCCceEEEEEEEe
Q 039945 502 RGEKIALSRRVEKHWRLIGWGQIQ 525 (531)
Q Consensus 502 ~g~r~ilr~~~~~~~~tig~G~I~ 525 (531)
+|+||+||++....|||||+|.|+
T Consensus 386 ~~~~~~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 386 PGDRVAISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp TTCEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCEEEEEEecCCCcEEEEEEEEc
Confidence 999999998877789999999997
No 3
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=6.4e-59 Score=486.85 Aligned_cols=396 Identities=43% Similarity=0.757 Sum_probs=326.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
++.++|+++|++|||||||+++|++....+. .++....++... .+..+..+... .....+.+.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-----------~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~ 68 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-----------LGYAETNIGVCE--SCKKPEAYVTE----PSCKSCGSD 68 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-----------SEEEEEEEEECT--TSCTTTTEESS----SCCGGGTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccc-----------cCccccceeecc--ccccccceecc----ccccccccc
Confidence 5568999999999999999999998654321 111111111110 01111111100 000011111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~ 262 (531)
......+.++|||||||++|.+++..++..+|++|+|+|++++...+|+++|+.++..++.+|+|+|+||+|+.+.
T Consensus 69 ----~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 69 ----DEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK 144 (403)
T ss_dssp ----SCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred ----ccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch
Confidence 1112237899999999999999999999999999999999998448999999999999998889999999999988
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCce
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGG 342 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~ 342 (531)
+...+..+++.+++++......+++++||++|+|+++|+++|.+.++.|.++.+.|++++|+++|+|++++.++++++|+
T Consensus 145 ~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~ 224 (403)
T 3sjy_A 145 EEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGG 224 (403)
T ss_dssp HHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCC
T ss_pred HHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCc
Confidence 77777888888888776666889999999999999999999998899898888999999999999999998888999999
Q ss_pred EEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCcccccccccccee
Q 039945 343 VAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQV 422 (531)
Q Consensus 343 v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~v 422 (531)
|++|+|.+|+|++||+|.++|+.... .+|+..+.|..++|++|+++++++++|.|||+|++.++++.++++.++.+|+|
T Consensus 225 v~~g~v~~G~~~~gd~v~~~p~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~v 303 (403)
T 3sjy_A 225 VIGGSIIQGLFKVDQEIKVLPGLRVE-KQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSI 303 (403)
T ss_dssp EEEEEEEESCEETTCEEEEEEEEEEE-ETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHHHHGGGTTTTCE
T ss_pred EEEEEEEeCEEecCCEEEEeCCcccc-cccccccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccccchhhhccccE
Confidence 99999999999999999999975322 34554455667899999999999999999999999998877889999999999
Q ss_pred eccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCceEEEEeCCeeeccc
Q 039945 423 LGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSR 502 (531)
Q Consensus 423 l~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~~v~~~l~~p~~~~~ 502 (531)
|+.++.+|++++.|+|++.||++..+.+. ..+.++|..|+++++|+|+.++.|+|..++.+.++|.|.+|+|++.
T Consensus 304 l~~~~~~~~~~~~~~a~~~~l~~~~~~~~-----~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~~~~~~~~l~~p~~~~~ 378 (403)
T 3sjy_A 304 ITLADAEVPVLWNIRIKYNLLERVVGAKE-----MLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWS 378 (403)
T ss_dssp EEETTCCCCEEEEEEEEEEECSBCTTCSS-----CCBCCCCCTTCEEEEEETTEEEEEEEEEECSSEEEEEEEEEEECCS
T ss_pred EeCCCCCCcceeEEEEEEEEEeccccccc-----cccCCCCCCCCEEEEEECccEEEEEEEEecCceEEEEeCCcEeecc
Confidence 99999999999999999999987433221 1224789999999999999999999999999999999999999999
Q ss_pred CC-EEEEEeccCCCceEEEEEEEe
Q 039945 503 GE-KIALSRRVEKHWRLIGWGQIQ 525 (531)
Q Consensus 503 g~-r~ilr~~~~~~~~tig~G~I~ 525 (531)
|+ ||+|.++.+..||++|||.|.
T Consensus 379 g~~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 379 NNIRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp SSCEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEEEEeCCcEEEEEEEEEE
Confidence 99 999988888899999999985
No 4
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=7.9e-56 Score=467.35 Aligned_cols=341 Identities=21% Similarity=0.319 Sum_probs=292.5
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCC----------------------------CcCccccceecceEeeecceeeeee
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGV----------------------------QTVRFKNELERNITIKLGYANAKIY 153 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~----------------------------~~~~~~~e~~~git~~~~~~~~~~~ 153 (531)
.++.+||+++||+|+|||||+|+|++. ..+.+++|+++|+|+++.+..+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~-- 91 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE-- 91 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe--
Confidence 356799999999999999999999643 12455678889999988764321
Q ss_pred cccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCC-
Q 039945 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQ- 232 (531)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~- 232 (531)
...+.++|||||||++|.+++..+++.+|++|||||++++ ..
T Consensus 92 ------------------------------------~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g-~~e 134 (439)
T 3j2k_7 92 ------------------------------------TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG-EFE 134 (439)
T ss_pred ------------------------------------cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC-ccc
Confidence 1126899999999999999999999999999999999987 43
Q ss_pred ------cchHHHHHHHHHcCCceEEEEEeccCCccH----HHHHHHHHHHHHHHhcccCC---CCCEEEecccCccchHH
Q 039945 233 ------PQTSEHLAAVEIMRLQHIIILQNKVDLIQE----NVAINQHEAIMKFIQGTVAD---GAPVVPISAQLKYNIDV 299 (531)
Q Consensus 233 ------~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~----~~~~~~~~~i~~~l~~~~~~---~~~ii~iSa~~g~gi~~ 299 (531)
+|+++|+.++..++++++|+|+||+|+.+. ...++..+++.++++..+.. .++++++||++|+|+++
T Consensus 135 ~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~ 214 (439)
T 3j2k_7 135 TGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKE 214 (439)
T ss_pred cccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccc
Confidence 799999999999999889999999999642 33455566676776654432 57899999999999998
Q ss_pred ------------HHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCcee
Q 039945 300 ------------VCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVV 367 (531)
Q Consensus 300 ------------L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~ 367 (531)
|++.|. .+|.|.+..+.|++|+|.++|+ + .|+|++|+|.+|+|++||.|.++|++
T Consensus 215 l~~~~~w~~g~~L~~~l~-~i~~~~~~~~~p~r~~v~~~~~--~--------~G~v~~G~v~~G~l~~Gd~v~~~p~~-- 281 (439)
T 3j2k_7 215 QSDFCPWYIGLPFIPYLD-NLPNFNRSVDGPIRLPIVDKYK--D--------MGTVVLGKLESGSIFKGQQLVMMPNK-- 281 (439)
T ss_pred ccccccccCchHHHHHHH-hCCCCccCCCCCeEEEEEEEEc--C--------CCeEEEEEEEeeEEecCCEEEEccCC--
Confidence 556665 5788888889999999999873 2 79999999999999999999999984
Q ss_pred cCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeec
Q 039945 368 KDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLL 447 (531)
Q Consensus 368 ~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~ 447 (531)
..++|++|++++.++++|.|||+|++.|+ +++..++.+|++|++++.+|+.++.|+|++.||+|+
T Consensus 282 -----------~~~~V~~i~~~~~~~~~a~aG~~v~~~l~---gi~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~~- 346 (439)
T 3j2k_7 282 -----------HNVEVLGILSDDTETDFVAPGENLKIRLK---GIEEEEILPGFILCDPSNLCHSGRTFDVQIVIIEHK- 346 (439)
T ss_pred -----------ceEEEEEEEECCeEcCEecCCCcceEEEe---ccchhhcCCcEEecCCCCCCceeeEEEEEEEEeCCC-
Confidence 35899999999999999999999999998 899999999999999999988899999999999872
Q ss_pred ccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecCc----------------------eEEEEeCCeeecccCC-
Q 039945 448 GVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKND----------------------LAKLQLTSPVCTSRGE- 504 (531)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~~----------------------~v~~~l~~p~~~~~g~- 504 (531)
.+|..|+.+.+||++.++.|+|..+... .|+|.+.+|+|+++++
T Consensus 347 -------------~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p~~~e~~~~ 413 (439)
T 3j2k_7 347 -------------SIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKD 413 (439)
T ss_pred -------------CcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCCeEEEeeccc
Confidence 4699999999999999999999987421 6888899999999985
Q ss_pred -----EEEEEeccCCCceEEEEEEEee
Q 039945 505 -----KIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 505 -----r~ilr~~~~~~~~tig~G~I~~ 526 (531)
||+||| .++|+|+|.|++
T Consensus 414 ~~~~g~f~l~d----~~~tv~~G~i~~ 436 (439)
T 3j2k_7 414 FPQMGRFTLRD----EGKTIAIGKVLK 436 (439)
T ss_pred cccCCCEEEEE----CCceEEEEEEEE
Confidence 999998 689999999986
No 5
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=1.7e-54 Score=452.31 Aligned_cols=349 Identities=26% Similarity=0.397 Sum_probs=295.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC-------------cCccccceecceEeeecceeeeeecccCCCCCCCccccccC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ-------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYG 170 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~-------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 170 (531)
+.++|+++||+|+|||||+++|++.. .+.+.+|+++|+|+++.+..+.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~------------------- 62 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS------------------- 62 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-------------------
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-------------------
Confidence 46899999999999999999998631 2345678899999987542210
Q ss_pred CCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceE
Q 039945 171 SGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHI 250 (531)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~i 250 (531)
...+.++|||||||++|..++..++..+|++|+|+|++++ ..+|+++|+.++..++++.+
T Consensus 63 -------------------~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-~~~qt~e~l~~~~~~~vp~i 122 (397)
T 1d2e_A 63 -------------------TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG-PMPQTREHLLLARQIGVEHV 122 (397)
T ss_dssp -------------------CSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC-SCHHHHHHHHHHHHTTCCCE
T ss_pred -------------------cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC-CCHHHHHHHHHHHHcCCCeE
Confidence 0116899999999999999999999999999999999998 79999999999998998778
Q ss_pred EEEEeccCCcc-HHHHHHHHHHHHHHHhcccC--CCCCEEEecccCccc----------hHHHHHHHHccCCCCCCCCCC
Q 039945 251 IILQNKVDLIQ-ENVAINQHEAIMKFIQGTVA--DGAPVVPISAQLKYN----------IDVVCEYIVKKIPIPERNFID 317 (531)
Q Consensus 251 IvviNK~Dl~~-~~~~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~g----------i~~L~~~L~~~l~~~~~~~~~ 317 (531)
|+|+||+|+.+ ....+...+++.++++.++. ...+++++||++|.| +++|+++|.+.+|.|.++.+.
T Consensus 123 ivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~ 202 (397)
T 1d2e_A 123 VVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEK 202 (397)
T ss_dssp EEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCCTTS
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCCCCC
Confidence 89999999984 44445555677777765433 357999999999874 899999999889999888899
Q ss_pred CCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEe
Q 039945 318 PPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAV 397 (531)
Q Consensus 318 ~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~ 397 (531)
|++|+|+++|.+++ +|+|++|+|.+|+|++||.|.++|.+. +..++|++|+.++.++++|.
T Consensus 203 p~~~~v~~v~~~~~--------~G~v~~g~v~~G~l~~gd~v~~~~~~~-----------~~~~~V~~i~~~~~~~~~a~ 263 (397)
T 1d2e_A 203 PFLLPVESVYSIPG--------RGTVVTGTLERGILKKGDECEFLGHSK-----------NIRTVVTGIEMFHKSLDRAE 263 (397)
T ss_dssp CCEEECCEEEEETT--------TEEEEEEECCBSEEETTCEEEEEETTE-----------EEEEEEEEEEETTEEESEEE
T ss_pred cEEEEEEEEEEeCC--------ceEEEEEEEeeceEeCCCEEEEeCCCC-----------CeEEEEEEEEECCcccCEec
Confidence 99999999998764 899999999999999999999998631 13589999999999999999
Q ss_pred cCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeecee
Q 039945 398 PGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMS 477 (531)
Q Consensus 398 aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~ 477 (531)
|||+|++.++ +++..++.+|++|+.++. |..++.|+|+++||++..+. ...+|..|+.+++|+++.+
T Consensus 264 aG~~v~~~l~---~i~~~~i~~G~~l~~~~~-~~~~~~f~a~v~~l~~~~~~---------~~~~~~~g~~~~~~~~t~~ 330 (397)
T 1d2e_A 264 AGDNLGALVR---GLKREDLRRGLVMAKPGS-IQPHQKVEAQVYILTKEEGG---------RHKPFVSHFMPVMFSLTWD 330 (397)
T ss_dssp TTCEEEEEES---SCCGGGCCTTCEEESTTS-CCCEEEEEEEEEECCGGGTS---------CSSCBCTTCCCEEEETTEE
T ss_pred CCCceEEEec---ccchhccCceeEEeCCCC-CCcccEEEEEEEEecccccc---------CccccCCCCEEEEEEecCE
Confidence 9999999998 788889999999999874 56789999999999863211 1358999999999999999
Q ss_pred eeEEEEEecC--------c--eEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEeece
Q 039945 478 TGARVLAVKN--------D--LAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQAGT 528 (531)
Q Consensus 478 ~~~~v~~i~~--------~--~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~~~ 528 (531)
+.|+|. +.. + .|+|+|.+|+|+++|+||+||+ .|+|+|+|.|++-.
T Consensus 331 ~~~~i~-l~~~~~~l~~~~~~~v~~~~~~p~~~~~~~r~~lr~----~~~ti~~G~i~~~~ 386 (397)
T 1d2e_A 331 MACRII-LPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRD----GNRTIGTGLVTDTP 386 (397)
T ss_dssp EEEEEE-CCSSCCCBCTTCEEEEEEEEEEEECCCTTCEEEEEE----TTEEEEEEEEEECC
T ss_pred EEEEEE-EcCCcccccCCCEEEEEEEECCeEEEccCCeEEEEe----CCeEEEEEEEeecc
Confidence 999998 421 2 7889999999999999999996 78999999998643
No 6
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=3.4e-54 Score=451.45 Aligned_cols=349 Identities=28% Similarity=0.394 Sum_probs=294.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC--------------CcCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV--------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~--------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
++.++|+++||+|+|||||+++|++. ..+.+.+|+++|+|++..+..+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~------------------ 70 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY------------------ 70 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEE------------------
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEe------------------
Confidence 56799999999999999999999862 1234456778898887643211
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
+ .....++|||||||++|..++..++..+|++|+|+|++++ ...|+++++.++..++++
T Consensus 71 -----------~---------~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-~~~qt~~~l~~~~~~~ip 129 (405)
T 2c78_A 71 -----------E---------TAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG-PMPQTREHILLARQVGVP 129 (405)
T ss_dssp -----------E---------CSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTC-CCHHHHHHHHHHHHTTCC
T ss_pred -----------c---------cCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCC
Confidence 0 0126899999999999999999999999999999999998 789999999999999987
Q ss_pred eEEEEEeccCCcc-HHHHHHHHHHHHHHHhcccC--CCCCEEEecccCccc------------------hHHHHHHHHcc
Q 039945 249 HIIILQNKVDLIQ-ENVAINQHEAIMKFIQGTVA--DGAPVVPISAQLKYN------------------IDVVCEYIVKK 307 (531)
Q Consensus 249 ~iIvviNK~Dl~~-~~~~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~g------------------i~~L~~~L~~~ 307 (531)
++|+|+||+|+.+ ....+...+++.++++.++. ...+++++||++|.| +++|+++|.+.
T Consensus 130 ~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 209 (405)
T 2c78_A 130 YIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEY 209 (405)
T ss_dssp CEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhh
Confidence 7899999999984 44444555667777765432 357999999999988 89999999988
Q ss_pred CCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEee
Q 039945 308 IPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLF 387 (531)
Q Consensus 308 l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~ 387 (531)
+|.|.++.+.|++|+|+++|.+++ +|+|++|+|.+|+|++||.|.++|.+. + +..++|++|+
T Consensus 210 lp~p~~~~~~p~~~~v~~v~~~~~--------~G~v~~g~v~~G~l~~gd~v~~~~~~~-----~-----~~~~~V~~i~ 271 (405)
T 2c78_A 210 IPTPVRDVDKPFLMPVEDVFTITG--------RGTVATGRIERGKVKVGDEVEIVGLAP-----E-----TRKTVVTGVE 271 (405)
T ss_dssp SCCCCCCCSSCCEEECCEEEEETT--------TEEEEEEECCBSEEETTCEEEEESSSS-----S-----CEEEEEEEEE
T ss_pred cCCCCCCCCCCcEEEEEEEEEcCC--------CceEEEEEEecccccCCCEEEEeCCCC-----C-----eeeEEEEEEE
Confidence 998888889999999999998754 899999999999999999999999731 0 1358999999
Q ss_pred ecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCC
Q 039945 388 AEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQE 467 (531)
Q Consensus 388 ~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~ 467 (531)
.++.++++|.|||+|++.++ +++..++.+|++|+.++. |..++.|+|+++||++..+. ...+|..|+
T Consensus 272 ~~~~~~~~a~aG~~v~~~l~---g~~~~~i~~G~~l~~~~~-~~~~~~f~a~v~~l~~~~~~---------~~~~~~~g~ 338 (405)
T 2c78_A 272 MHRKTLQEGIAGDNVGVLLR---GVSREEVERGQVLAKPGS-ITPHTKFEASVYVLKKEEGG---------RHTGFFSGY 338 (405)
T ss_dssp ETTEEESEEETTCEEEEEES---SCCTTTCCTTCEEESTTS-SEEEEEEEEEEEECCGGGTS---------CSSCBCTTC
T ss_pred ECCcccCEEcCCCEEEEEEC---CCcHhhcCceEEEEcCCC-CceeEEEEEEEEEecccCCC---------ccccccCCc
Confidence 99999999999999999998 788889999999999874 67789999999999753211 135899999
Q ss_pred EEEEEeeceeeeEEEEEecC----------ceEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEee
Q 039945 468 ILMLNIGSMSTGARVLAVKN----------DLAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 468 ~~~l~~g~~~~~~~v~~i~~----------~~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
.+++|+++.++.|+|. +.. ..|+|++.+|+|+++|+||+||+ .|+|+|+|.|++
T Consensus 339 ~~~~~~~t~~~~~~i~-~~~~~~~l~~~~~~~v~~~~~~p~~~~~~~rf~lr~----~~~ti~~G~i~~ 402 (405)
T 2c78_A 339 RPQFYFRTTDVTGVVQ-LPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIRE----GGRTVGAGVVTK 402 (405)
T ss_dssp CCEEEETTEEEEEEEE-CCTTCCCBCTTCEEEEEEEEEEEEEECTTCEEEEEE----TTEEEEEEEEEE
T ss_pred eEEEEEcccEEEEEEE-EccCccccCCCCEEEEEEEECceEEEccCCEEEEEc----CCeEEEEEEEEe
Confidence 9999999999999998 432 17899999999999999999996 789999999985
No 7
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=3.8e-54 Score=456.91 Aligned_cols=342 Identities=23% Similarity=0.335 Sum_probs=292.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC---C-------------------------cCccccceecceEeeecceeeeeec
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV---Q-------------------------TVRFKNELERNITIKLGYANAKIYK 154 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~---~-------------------------~~~~~~e~~~git~~~~~~~~~~~~ 154 (531)
++.++|+++||+|+|||||+|+|++. . .++..+|+++|+|+++.+..+.
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~--- 81 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE--- 81 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE---
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe---
Confidence 45689999999999999999999853 1 1334567788999887663221
Q ss_pred ccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCc-
Q 039945 155 CEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQP- 233 (531)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~- 233 (531)
...+.++|||||||++|.+++..++..+|++|||+|++++ ..+
T Consensus 82 -----------------------------------~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g-~~~~ 125 (458)
T 1f60_A 82 -----------------------------------TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG-EFEA 125 (458)
T ss_dssp -----------------------------------CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH-HHHH
T ss_pred -----------------------------------cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC-cccc
Confidence 1126899999999999999999999999999999999876 333
Q ss_pred ------chHHHHHHHHHcCCceEEEEEeccCCcc--HHHHHHHHHHHHHHHhcccCC--CCCEEEecccCccchH-----
Q 039945 234 ------QTSEHLAAVEIMRLQHIIILQNKVDLIQ--ENVAINQHEAIMKFIQGTVAD--GAPVVPISAQLKYNID----- 298 (531)
Q Consensus 234 ------qt~e~l~~~~~~~~~~iIvviNK~Dl~~--~~~~~~~~~~i~~~l~~~~~~--~~~ii~iSa~~g~gi~----- 298 (531)
|+++|+.++..++++++|+|+||+|+.+ .+.++...+++.++++..+.. ..+++++||++|+|++
T Consensus 126 sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~ 205 (458)
T 1f60_A 126 GISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTN 205 (458)
T ss_dssp HTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSS
T ss_pred ccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccccc
Confidence 8999999999899888999999999984 455566677777777654332 4799999999999985
Q ss_pred -------------------HHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEE
Q 039945 299 -------------------VVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFI 359 (531)
Q Consensus 299 -------------------~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v 359 (531)
.|+++|. .+++|.+..+.|++|+|+++|.+++ +|+|++|+|.+|.+++||.|
T Consensus 206 ~~~~~~~~~~~~tg~~~~~~Ll~~l~-~~~~p~~~~~~p~r~~i~~v~~~~g--------~G~v~~G~v~~G~l~~gd~v 276 (458)
T 1f60_A 206 APWYKGWEKETKAGVVKGKTLLEAID-AIEQPSRPTDKPLRLPLQDVYKIGG--------IGTVPVGRVETGVIKPGMVV 276 (458)
T ss_dssp CTTCCCEEEECSSSEEEESSHHHHHH-TSCCCCCCTTSCCEEEEEEEEEETT--------TEEEEEEECCBSCBCTTCEE
T ss_pred CchhhcccccccccccchHHHHHHhh-ccCCCcccCCCCcEEEEEEEEEeCC--------CcEEEEEEEeCCeEcCCCEE
Confidence 5888877 5777888889999999999998865 89999999999999999999
Q ss_pred EEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCCC-ccceeEEEEE
Q 039945 360 EVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGS-LPEVFVELEV 438 (531)
Q Consensus 360 ~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~-~p~~~~~f~a 438 (531)
.++|.+ ..++|++|+.++.++++|.|||+|++.++ +++..++.+|++|+.++. +|..++.|+|
T Consensus 277 ~~~p~~-------------~~~~V~~i~~~~~~~~~a~aG~~v~i~l~---gi~~~~i~rG~vl~~~~~~~~~~~~~f~a 340 (458)
T 1f60_A 277 TFAPAG-------------VTTEVKSVEMHHEQLEQGVPGDNVGFNVK---NVSVKEIRRGNVCGDAKNDPPKGCASFNA 340 (458)
T ss_dssp EEETTT-------------EEEEEEEEEETTEECSCBCTTCEEEEEES---SCCTTTSCTTCEEEETTSSCCCCCSEEEE
T ss_pred EECCCC-------------ceEEEeEEEECCeEEEEEcCCCEEEEEEc---CCcccccCceeEEecCCCCCCceeeEEEE
Confidence 999974 36899999999999999999999999998 787889999999999875 7888999999
Q ss_pred EEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecC--------------------c--eEEEEeCC
Q 039945 439 NFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKN--------------------D--LAKLQLTS 496 (531)
Q Consensus 439 ~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~--------------------~--~v~~~l~~ 496 (531)
++.||++ +.+|..|+++++|+|+.+++|+|..+.. + .|+|++.+
T Consensus 341 ~v~~l~~--------------~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~ 406 (458)
T 1f60_A 341 TVIVLNH--------------PGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSK 406 (458)
T ss_dssp EEEECSC--------------SCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEEESS
T ss_pred EEEEeCC--------------CCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCEEEEEEEECC
Confidence 9999975 3689999999999999999999998731 1 78999999
Q ss_pred eeecccCC------EEEEEeccCCCceEEEEEEEee
Q 039945 497 PVCTSRGE------KIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 497 p~~~~~g~------r~ilr~~~~~~~~tig~G~I~~ 526 (531)
|+|+++|+ ||+||| .++|+|+|.|++
T Consensus 407 p~~~~~~~~~~~~grf~lr~----~~~tv~~G~v~~ 438 (458)
T 1f60_A 407 PMCVEAFSEYPPLGRFAVRD----MRQTVAVGVIKS 438 (458)
T ss_dssp CCCCCCTTTCGGGSEEEEEE----TTEEEEEEEEEE
T ss_pred eEEEecCccCCCCCcEEEEE----CCeEEEEEEEEe
Confidence 99999999 999997 789999999986
No 8
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=1.6e-53 Score=449.95 Aligned_cols=343 Identities=26% Similarity=0.404 Sum_probs=285.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC---C-------------------------cCccccceecceEeeecceeeeeec
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV---Q-------------------------TVRFKNELERNITIKLGYANAKIYK 154 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~---~-------------------------~~~~~~e~~~git~~~~~~~~~~~~ 154 (531)
++.++|+++||+|+|||||+++|++. . .+.+.+|+++|+|++..+..+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~---- 79 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF---- 79 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE----
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE----
Confidence 56799999999999999999999742 1 234567888999998765321
Q ss_pred ccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC----
Q 039945 155 CEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC---- 230 (531)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~---- 230 (531)
++. .+.++|||||||++|..++..++..+|++|+|+|++++.
T Consensus 80 -------------------------~~~---------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~ 125 (435)
T 1jny_A 80 -------------------------ETK---------KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAG 125 (435)
T ss_dssp -------------------------ECS---------SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHH
T ss_pred -------------------------ecC---------CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccc
Confidence 111 268999999999999999999999999999999999851
Q ss_pred --CCcchHHHHHHHHHcCCceEEEEEeccCCcc----HHHHHHHHHHHHHHHhcccCC--CCCEEEecccCccchH----
Q 039945 231 --PQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ----ENVAINQHEAIMKFIQGTVAD--GAPVVPISAQLKYNID---- 298 (531)
Q Consensus 231 --~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~----~~~~~~~~~~i~~~l~~~~~~--~~~ii~iSa~~g~gi~---- 298 (531)
..+|+++|+.++..++++++|+|+||+|+.+ .+..+...+++.++++..+.. ..+++++||++|+|+.
T Consensus 126 ~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 126 MSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 4779999999999999888999999999986 344566677788777654322 4789999999999996
Q ss_pred --------HHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCC
Q 039945 299 --------VVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDE 370 (531)
Q Consensus 299 --------~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~ 370 (531)
.|+++|. .+++|.+..+.|++++|+++|++.+ .|++++|+|.+|+|++||.|.++|++
T Consensus 206 ~~~~~~g~~Ll~~l~-~~~~p~~~~~~~~~~~v~~v~~~~~--------~G~v~~g~v~~G~l~~gd~v~~~p~~----- 271 (435)
T 1jny_A 206 NMKWYNGPTLEEYLD-QLELPPKPVDKPLRIPIQDVYSISG--------VGTVPVGRVESGVLKVGDKIVFMPAG----- 271 (435)
T ss_dssp SCTTCCSCCHHHHHT-TCCCCCCGGGSCCBEEEEEEEEETT--------TEEEEEEECCBSCEETTCEEEEETTT-----
T ss_pred ccccccchhHHHHHh-ccCCCCCCCCCCeEEEEEEEEEeCC--------CcEEEEEEEecCeEEcCCEEEECCce-----
Confidence 6888877 4666777778899999999998864 89999999999999999999999974
Q ss_pred CCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccc
Q 039945 371 SGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVR 450 (531)
Q Consensus 371 ~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~ 450 (531)
...+|++|+.++.++++|.|||+|++.++ ++...++.+|++|+.++.+|.....|.|+++||++
T Consensus 272 --------~~~~V~~i~~~~~~~~~a~aG~~v~~~l~---g~~~~~i~~Gd~l~~~~~~~~~~~~f~a~v~~l~~----- 335 (435)
T 1jny_A 272 --------KVGEVRSIETHHTKMDKAEPGDNIGFNVR---GVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVWH----- 335 (435)
T ss_dssp --------EEEEEEEEEETTEEESEECTTCEEEEEEE---SSCGGGCCTTCEEECTTSCCCEESEEEEEEEECCC-----
T ss_pred --------eEEEEEEEEECCcEEeEEcCCCEEEEEEe---cCCHHHcCCccEecCCCCCceEeEEEEEEEEEECC-----
Confidence 36899999999999999999999999998 77788999999999998788889999999999975
Q ss_pred cCCCcccccccccCCCCEEEEEeeceeeeEEEEEecC--------------------c--eEEEEeCCeeecccCC----
Q 039945 451 TKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKN--------------------D--LAKLQLTSPVCTSRGE---- 504 (531)
Q Consensus 451 ~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~--------------------~--~v~~~l~~p~~~~~g~---- 504 (531)
+++|..|+++++|+|+.++.|+|..+.. + .|+|++.+|+|+++|+
T Consensus 336 ---------~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~ 406 (435)
T 1jny_A 336 ---------PTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPP 406 (435)
T ss_dssp ---------SSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEECCCTTTSGG
T ss_pred ---------CCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEEEecCCcCCc
Confidence 3689999999999999999999998731 1 6899999999999999
Q ss_pred --EEEEEeccCCCceEEEEEEEee
Q 039945 505 --KIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 505 --r~ilr~~~~~~~~tig~G~I~~ 526 (531)
||+||| .|+|||+|.|++
T Consensus 407 ~grf~lr~----~~~tv~~G~i~~ 426 (435)
T 1jny_A 407 LGRFAMRD----MGKTVGVGIIVD 426 (435)
T ss_dssp GTEEEEEE----TTEEEEEEEEEE
T ss_pred CccEEEEE----CCeEEEEEEEee
Confidence 999997 689999999975
No 9
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-54 Score=467.81 Aligned_cols=342 Identities=18% Similarity=0.251 Sum_probs=268.8
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCC----------------------------CcCccccceecceEeeecceeeeee
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGV----------------------------QTVRFKNELERNITIKLGYANAKIY 153 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~----------------------------~~~~~~~e~~~git~~~~~~~~~~~ 153 (531)
.++.+||+++||+|+|||||+|+|++. ..+.+.+|+++|+|+++.+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~--- 250 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTF--- 250 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEE---
Confidence 467899999999999999999999631 1234567778888887765321
Q ss_pred cccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC---
Q 039945 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC--- 230 (531)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~--- 230 (531)
.+. .+.++|||||||++|..++..++..+|++|||||++.+.
T Consensus 251 --------------------------~~~---------~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~ 295 (592)
T 3mca_A 251 --------------------------ESD---------KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFER 295 (592)
T ss_dssp -------------------------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSST
T ss_pred --------------------------EeC---------CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCcccc
Confidence 111 268999999999999999999999999999999999751
Q ss_pred -C--CcchHHHHHHHHHcCCceEEEEEeccCCcc--HHHHHHHHHHHHHHH-hcccC--CCCCEEEecccCccchH----
Q 039945 231 -P--QPQTSEHLAAVEIMRLQHIIILQNKVDLIQ--ENVAINQHEAIMKFI-QGTVA--DGAPVVPISAQLKYNID---- 298 (531)
Q Consensus 231 -~--~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~--~~~~~~~~~~i~~~l-~~~~~--~~~~ii~iSa~~g~gi~---- 298 (531)
+ .+|+++|+.++..++++++|+|+||+|+++ ........+++.+++ +..+. ..++++++||++|.|++
T Consensus 296 gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~ 375 (592)
T 3mca_A 296 GFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDS 375 (592)
T ss_dssp TSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCC
T ss_pred ccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccc
Confidence 3 889999999999999988999999999986 555666777888887 54332 34689999999999998
Q ss_pred ----------HHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceec
Q 039945 299 ----------VVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVK 368 (531)
Q Consensus 299 ----------~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~ 368 (531)
.|+++|...+| |.+..+.|++|+|+++|.+ + .|++++|+|.+|+|++||.|.++|++
T Consensus 376 ~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~v~~v~~~-~--------~g~v~~G~v~~G~l~~Gd~v~i~p~~--- 442 (592)
T 3mca_A 376 SDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSIDDVYRS-P--------RSVTVTGRVEAGNVQVNQVLYDVSSQ--- 442 (592)
T ss_dssp CGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEEEEEEEEE-T--------TEEEEEEEEEESEEETTCEEEETTTT---
T ss_pred cccccccchHHHHHHHHhhcc-ccccccccchheeeEEEec-C--------CeEEEEEEEeeeeEccCCEEEEccCC---
Confidence 89999997665 7777889999999999987 4 79999999999999999999999985
Q ss_pred CCCCceeeccceeeeEEeeeccccee-EEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeec
Q 039945 369 DESGNIKCTPIYSRIVSLFAEQNELQ-FAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLL 447 (531)
Q Consensus 369 ~~~g~~~~~~~~~~V~si~~~~~~v~-~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~ 447 (531)
..++|++|+.++.+++ +|.||++|++.|+ +++..++.+|++|+.++.+|..+..|.|+++||++
T Consensus 443 ----------~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~---~i~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~~~~-- 507 (592)
T 3mca_A 443 ----------EDAYVKNVIRNSDPSSTWAVAGDTVTLQLA---DIEVNQLRPGDILSNYENPVRRVRSFVAEIQTFDI-- 507 (592)
T ss_dssp ----------EEEEEEEEECSSSCSCCEEETTCEEEEEES---SSCGGGCCTTCEEECSSSCCEEESEEEEEEEECSC--
T ss_pred ----------ceEEEEEEEEcCccCcceecCCCEEEEEEc---cccccccceEEEeccCCCCccccCeEEEEEEEECC--
Confidence 3579999999999999 9999999999998 88888999999999999888889999999999976
Q ss_pred ccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecC--------------ceEEEE-eCCeeec------ccCCEE
Q 039945 448 GVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKN--------------DLAKLQ-LTSPVCT------SRGEKI 506 (531)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~--------------~~v~~~-l~~p~~~------~~g~r~ 506 (531)
+.||..|+++++|+|+.+++|+| .+.. ..|+|. +.+|+|+ .+++||
T Consensus 508 ------------~~pi~~g~~~~l~~~t~~~~~~i-~l~~~~~~~~~~l~~gd~~~v~l~fl~~p~~~e~~~~~~~~~rf 574 (592)
T 3mca_A 508 ------------HGPILSGSTLVLHLGRTVTSVSL-KIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAEECPALGRF 574 (592)
T ss_dssp ------------SSCEETTEEEEEECSSCEEEEEE-EEEESSSSCCSEECSSCEEEEEEEESSSCEEECCTTTCHHHHEE
T ss_pred ------------CccCCCCCEEEEEEcCcEEEEEE-EEEeccccchhccCCCCEEEEEEEECCCcEEEEeccCCCCCCeE
Confidence 36899999999999999999999 6632 178999 8999999 556799
Q ss_pred EEEeccCCCceEEEEEEEee
Q 039945 507 ALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 507 ilr~~~~~~~~tig~G~I~~ 526 (531)
+||+ .++|||+|.|++
T Consensus 575 ilr~----~~~Tv~~G~i~~ 590 (592)
T 3mca_A 575 ILRR----SGDTVAAGIVKE 590 (592)
T ss_dssp EEES----SSSEEEEEEEEE
T ss_pred EEEE----CCcEEEEEEEEE
Confidence 9995 789999999975
No 10
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=2.1e-53 Score=452.21 Aligned_cols=341 Identities=23% Similarity=0.298 Sum_probs=265.8
Q ss_pred ccCCeeEEEEEcCCCCcHHHHHHHHHC---CC-------------------------cCccccceecceEeeecceeeee
Q 039945 101 SRQATINIGTIGHVAHGKSTVVKAISG---VQ-------------------------TVRFKNELERNITIKLGYANAKI 152 (531)
Q Consensus 101 ~~~~~~~V~iiG~~~~GKSTLi~~L~g---~~-------------------------~~~~~~e~~~git~~~~~~~~~~ 152 (531)
..++.++|+++||+|+|||||+++|++ .. .+..+.|+++|+|+++++..+
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~-- 116 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF-- 116 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE--
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE--
Confidence 346679999999999999999999973 21 233456778899888765322
Q ss_pred ecccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCC-
Q 039945 153 YKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCP- 231 (531)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~- 231 (531)
++. .+.++|||||||++|.+++..++..+|++|||||++++ .
T Consensus 117 ---------------------------~~~---------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g-~~ 159 (467)
T 1r5b_A 117 ---------------------------ETE---------HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG-EF 159 (467)
T ss_dssp ---------------------------ECS---------SEEEEECCCCC-----------TTSCSEEEEEEECSTT-HH
T ss_pred ---------------------------ecC---------CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC-cc
Confidence 111 27899999999999999999999999999999999986 3
Q ss_pred ------CcchHHHHHHHHHcCCceEEEEEeccCCcc----HHHHHHHHHHHHHHHhcc-cCC---CCCEEEecccCccch
Q 039945 232 ------QPQTSEHLAAVEIMRLQHIIILQNKVDLIQ----ENVAINQHEAIMKFIQGT-VAD---GAPVVPISAQLKYNI 297 (531)
Q Consensus 232 ------~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~----~~~~~~~~~~i~~~l~~~-~~~---~~~ii~iSa~~g~gi 297 (531)
.+|+++|+.++..++++++|+|+||+|+.+ .+.++...+++.++++.. +.. ..+++++||++|+|+
T Consensus 160 e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i 239 (467)
T 1r5b_A 160 EAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNV 239 (467)
T ss_dssp HHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTT
T ss_pred ccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccc
Confidence 379999999999999887999999999954 345566667777777654 333 578999999999999
Q ss_pred HH--------------HHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEec
Q 039945 298 DV--------------VCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRP 363 (531)
Q Consensus 298 ~~--------------L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P 363 (531)
++ |++.|. .++.|.++.+.|++|+|+++|+ + .|+|++|+|.+|+|++||.|.++|
T Consensus 240 ~~l~~~~~~~w~~g~~L~~~l~-~i~~~~~~~~~p~~~~v~~~~~--~--------~G~v~~G~v~~G~l~~gd~v~~~p 308 (467)
T 1r5b_A 240 KDRVDSSVCPWYQGPSLLEYLD-SMTHLERKVNAPFIMPIASKYK--D--------LGTILEGKIEAGSIKKNSNVLVMP 308 (467)
T ss_dssp SSCCCTTTCSSCCSCCHHHHHH-HCCCCHHHHTSCCEEECCEEEE--S--------SSEEEEEECCBSEEETTEEEEEET
T ss_pred ccccccccCccccchhHHHHHH-hCCCCcCCCCCCcEEEEEEEEe--C--------CCeEEEEEEeeeEEeeCCEEEEcc
Confidence 75 667776 5887877778999999999885 1 689999999999999999999999
Q ss_pred CceecCCCCceeeccceeeeEEeeec-ccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEE
Q 039945 364 GIVVKDESGNIKCTPIYSRIVSLFAE-QNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFL 442 (531)
Q Consensus 364 ~~~~~~~~g~~~~~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~ 442 (531)
++ ..++|++|+++ +.++++|.|||+|++.|+ + +..++.+|++|+.++.+|.+++.|+|+++|
T Consensus 309 ~~-------------~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~---g-~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~ 371 (467)
T 1r5b_A 309 IN-------------QTLEVTAIYDEADEEISSSICGDQVRLRVR---G-DDSDVQTGYVLTSTKNPVHATTRFIAQIAI 371 (467)
T ss_dssp TT-------------EEEEEEEEECTTCCEESEEETTCEEEEEEE---S-CCTTCCTTCEEECSSSCCCEEEEEEEEEEE
T ss_pred CC-------------eeEEEEEEeccCCcEeeEEcCCCEEEEEEe---c-cHhhCCceEEEeCCCCCCccceEEEEEEEE
Confidence 74 35799999998 899999999999999998 6 778999999999999888999999999999
Q ss_pred eeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecC-------------------c--eEEEEeCCeeecc
Q 039945 443 LRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKN-------------------D--LAKLQLTSPVCTS 501 (531)
Q Consensus 443 l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~-------------------~--~v~~~l~~p~~~~ 501 (531)
|++ ..+|..|+++++|+++.+++|++..+.. + .|+|++.+|+|++
T Consensus 372 l~~--------------~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~~~~~~~~~~~~l~~g~~~~v~l~~~~p~~~~ 437 (467)
T 1r5b_A 372 LEL--------------PSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCME 437 (467)
T ss_dssp CSS--------------CCCBSSCCCBEEESSSCCCCBEESSCCCCCCSSCCCCSSCCSBCCTTCBCCEEEEEEEEEECC
T ss_pred eCC--------------CCccCCCCEEEEEEeCCEEEEEEEEEEEEecCCccccccCccccCCCCEEEEEEEECcEEEEE
Confidence 975 2579999999999999999999975431 1 7899999999999
Q ss_pred cCC------EEEEEeccCCCceEEEEEEEee
Q 039945 502 RGE------KIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 502 ~g~------r~ilr~~~~~~~~tig~G~I~~ 526 (531)
+|+ ||+||| .++|+|+|.|++
T Consensus 438 ~~~~~~~~grf~lrd----~~~Tv~~G~i~~ 464 (467)
T 1r5b_A 438 RFEDYQYMGRFTLRD----QGTTVAVGKVVK 464 (467)
T ss_dssp CTTTCHHHHEEEEEC----SSSCEEEEEEEE
T ss_pred EcCcCCCCccEEEEE----CCeEEEEEEEEE
Confidence 995 999997 679999999985
No 11
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2.2e-52 Score=441.30 Aligned_cols=341 Identities=22% Similarity=0.263 Sum_probs=282.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC------------------------------cCccccceecceEeeecceeeee
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ------------------------------TVRFKNELERNITIKLGYANAKI 152 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~------------------------------~~~~~~e~~~git~~~~~~~~~~ 152 (531)
++.++|+++|++|+|||||+++|++.. .+.+.+|+++|+|+++++..+.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~- 100 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS- 100 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee-
Confidence 456899999999999999999997421 1234577788888887653221
Q ss_pred ecccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCC
Q 039945 153 YKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQ 232 (531)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~ 232 (531)
.....++|||||||++|..++..++..+|++|||+|++++ ..
T Consensus 101 -------------------------------------~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g-~~ 142 (434)
T 1zun_B 101 -------------------------------------TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG-VQ 142 (434)
T ss_dssp -------------------------------------CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC-SC
T ss_pred -------------------------------------cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC-Cc
Confidence 1126899999999999999999999999999999999998 78
Q ss_pred cchHHHHHHHHHcCCceEEEEEeccCCcc--HHHHHHHHHHHHHHHhccc--CCCCCEEEecccCccchHH---------
Q 039945 233 PQTSEHLAAVEIMRLQHIIILQNKVDLIQ--ENVAINQHEAIMKFIQGTV--ADGAPVVPISAQLKYNIDV--------- 299 (531)
Q Consensus 233 ~qt~e~l~~~~~~~~~~iIvviNK~Dl~~--~~~~~~~~~~i~~~l~~~~--~~~~~ii~iSa~~g~gi~~--------- 299 (531)
+|+++++.++..++++++|+|+||+|+.+ .+......+++.++++..+ ....+++++||++|+|+++
T Consensus 143 ~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~ 222 (434)
T 1zun_B 143 TQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYA 222 (434)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCC
T ss_pred HHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCcccc
Confidence 99999999999999888999999999986 3445556677777776544 3457899999999999987
Q ss_pred ---HHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceee
Q 039945 300 ---VCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376 (531)
Q Consensus 300 ---L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~ 376 (531)
|++.|. .++.|.+..+.|++|+|+++|..+. .|+.+.|+|.+|+|++||.|.++|++
T Consensus 223 g~~L~~~l~-~i~~~~~~~~~~~~~~v~~v~~~~~--------~~~g~~G~v~~G~l~~gd~v~~~p~~----------- 282 (434)
T 1zun_B 223 GQSLMEILE-TVEIASDRNYTDLRFPVQYVNRPNL--------NFRGFAGTLASGIVHKGDEIVVLPSG----------- 282 (434)
T ss_dssp SCCTTHHHH-HSCCTTCCCSSSCEEECCEEECSSS--------SCCEEEEECCBSCEETTCEEEETTTC-----------
T ss_pred CchHHHHHh-cCCCcccCCCCCcEEEEEEEeccCC--------CceEEEEEEecceEeCCCEEEEecCC-----------
Confidence 677666 6787888888999999998886432 45668899999999999999999974
Q ss_pred ccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcc
Q 039945 377 TPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSER 456 (531)
Q Consensus 377 ~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~ 456 (531)
...+|++|+.++.++++|.|||+|++.++ . ..++.+|++|+.++.+|.+++.|+|++.||+
T Consensus 283 --~~~~V~~i~~~~~~~~~a~aG~~v~~~l~---~--~~~i~~G~~l~~~~~~~~~~~~f~a~~~~l~------------ 343 (434)
T 1zun_B 283 --KSSRVKSIVTFEGELEQAGPGQAVTLTME---D--EIDISRGDLLVHADNVPQVSDAFDAMLVWMA------------ 343 (434)
T ss_dssp --CEEEEEEEEETTEEESEECTTCEEEEEES---S--CCCCCTTCEEEETTSCCCEEEEEEEEEEECC------------
T ss_pred --eEEEEEEEEEcCcceeEecCCCEEEEEeC---C--ccccCCccEEECCCCCCCcccEEEEEEEEec------------
Confidence 35899999999999999999999999886 2 3478899999999999899999999999995
Q ss_pred cccccccCCCCEEEEEeeceeeeEEEEEecC------------------c--eEEEEeCCeeecccCC------EEEEEe
Q 039945 457 QGKVSKLAKQEILMLNIGSMSTGARVLAVKN------------------D--LAKLQLTSPVCTSRGE------KIALSR 510 (531)
Q Consensus 457 ~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~------------------~--~v~~~l~~p~~~~~g~------r~ilr~ 510 (531)
..+|..|+++++|+|+.++.|+|..+.. + .|+|++.+|+|+++|+ ||+|||
T Consensus 344 ---~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d~~~v~~~~~~p~~~~~~~~~~~~grf~l~d 420 (434)
T 1zun_B 344 ---EEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVID 420 (434)
T ss_dssp ---SSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEEEEEECCCTTTCTTTTEEEEEC
T ss_pred ---cccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccccCccEeCCCCEEEEEEEECCeEEEcccccCCccceEEEEE
Confidence 2589999999999999999999998762 1 7899999999999998 999997
Q ss_pred ccCCCceEEEEEEEee
Q 039945 511 RVEKHWRLIGWGQIQA 526 (531)
Q Consensus 511 ~~~~~~~tig~G~I~~ 526 (531)
+ ..++|||+|.|+.
T Consensus 421 ~--~~~~tv~~G~i~~ 434 (434)
T 1zun_B 421 R--LTNGTVAAGMIIA 434 (434)
T ss_dssp T--TTCCEEEEEEEEC
T ss_pred C--CCCcEEEEEEEeC
Confidence 5 3469999999963
No 12
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=3.6e-52 Score=429.14 Aligned_cols=325 Identities=17% Similarity=0.216 Sum_probs=279.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++||+|+|||||+++|+ ++|+|+++.+..+ ++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----------~~giTi~~~~~~~-----------------------------~~~---- 58 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----------KKGTSSDITMYNN-----------------------------DKE---- 58 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----------EEEEESSSEEEEE-----------------------------CSS----
T ss_pred EEEEECCCCCCHHHHHHHHH-----------hCCEEEEeeEEEE-----------------------------ecC----
Confidence 89999999999999999997 6889998776332 111
Q ss_pred ccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEe-ccCCccHHHH
Q 039945 187 CRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQN-KVDLIQENVA 265 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviN-K~Dl~~~~~~ 265 (531)
.+.++|||||||++|.+++..+++.+|++|+|+| +.+ ..+|+++++.++..++++.+|+++| |+|+ +.+..
T Consensus 59 -----~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g-~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~ 130 (370)
T 2elf_A 59 -----GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG-LDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAI 130 (370)
T ss_dssp -----SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-CCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHH
T ss_pred -----CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-CcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHH
Confidence 1679999999999999999999999999999999 877 7999999999999999886689999 9999 76666
Q ss_pred HHHHHHHHHHHhcccCCCCCEEE--ecccC---ccchHHHHHHHHccCCCC---CCC-CCCCCEEEEEEeeeecCCCCcc
Q 039945 266 INQHEAIMKFIQGTVADGAPVVP--ISAQL---KYNIDVVCEYIVKKIPIP---ERN-FIDPPNMIVIRSFDVNKPGFEV 336 (531)
Q Consensus 266 ~~~~~~i~~~l~~~~~~~~~ii~--iSa~~---g~gi~~L~~~L~~~l~~~---~~~-~~~~~~~~i~~~~~v~~~~~~~ 336 (531)
++..+++.++++.......++++ +||++ |+|+++|+++|.+.++.+ ... ...|++++|+++|++++
T Consensus 131 ~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~----- 205 (370)
T 2elf_A 131 DELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTG----- 205 (370)
T ss_dssp HHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC------
T ss_pred HHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCC-----
Confidence 66778888888765445689999 99999 999999999998877643 112 45668999999998754
Q ss_pred cCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccc
Q 039945 337 DDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRAD 416 (531)
Q Consensus 337 ~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~ 416 (531)
+|++++|+|.+|+|++||+|+++|.+ ..++|++|+.++.++++|.|||+|++.|+ +++..+
T Consensus 206 ---~G~v~~g~v~~G~l~~gd~v~~~p~~-------------~~~~V~~i~~~~~~v~~a~aGd~v~i~l~---gv~~~~ 266 (370)
T 2elf_A 206 ---KGCVVLGVVKQGISKDKDKTKIFPLD-------------RDIEIRSIQSHDVDIDSAPAGTRVGMRLK---NVQAKD 266 (370)
T ss_dssp -----CEEEEEEEESEEETTCEEEEETTT-------------EEEEEEEEEETTEEESEEETTCEEEEEEE---SCCGGG
T ss_pred ---CceEEEEEEECCEEeeCCEEEECCCC-------------cEEEEeEEEECCCCccEEcCCCcceEEEe---ccCHHH
Confidence 89999999999999999999999974 36899999999999999999999999998 788889
Q ss_pred cccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEec--Cc------
Q 039945 417 RLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVK--ND------ 488 (531)
Q Consensus 417 i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~--~~------ 488 (531)
+.+|++|+. + + ..++.|+|++.|+++ +++|..|+++++|+|+.+++|+|..+. .+
T Consensus 267 i~~Gdvl~~-~-~-~~~~~f~a~v~~l~~--------------~~~i~~g~~~~~~~~t~~~~~~v~~l~~d~~~~~~~~ 329 (370)
T 2elf_A 267 IERGFIISD-K-E-IVTTDYTLECTVSKF--------------TKKIEPASVLHLFVGLQSEPVRVEKILVDGNEVEEAK 329 (370)
T ss_dssp CCTTCEEES-C-C-EEEEEEEEEEEECTT--------------SCCBCTTCEEEEEETTEEEEEEEEEEEETTEEESCBC
T ss_pred cCCceEEEC-C-C-ceeEEEEEEEEEECC--------------CCCCCCCCEEEEEEcCCEEEEEEEEEEeCCCcceeec
Confidence 999999998 4 3 778999999999975 368999999999999999999999883 11
Q ss_pred -----eEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEe
Q 039945 489 -----LAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQ 525 (531)
Q Consensus 489 -----~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~ 525 (531)
.|+|++.+|+|+++|+||+||+... .+||+|+|.|.
T Consensus 330 ~g~~~~v~l~~~~pi~~~~~~rfilr~~~~-~~~tig~G~~~ 370 (370)
T 2elf_A 330 PGSTCVLELSGNKKLAYSKQDRFLLANLDL-TQRFAAYGFSK 370 (370)
T ss_dssp TTCEEEEEEEEEEEEEECTTSCEEEECTTS-SSCEEEEEEEC
T ss_pred CCCEEEEEEEECcEEEEeCCCEEEEEECCC-CCEEEEEEEeC
Confidence 7899999999999999999997422 37999999874
No 13
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=5.6e-52 Score=443.79 Aligned_cols=349 Identities=18% Similarity=0.209 Sum_probs=281.2
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCCC----------------------------cCccccceecceEeeecceeeeee
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGVQ----------------------------TVRFKNELERNITIKLGYANAKIY 153 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~~----------------------------~~~~~~e~~~git~~~~~~~~~~~ 153 (531)
.++.++|+++|++|+|||||+|+|++.. .+....|+++|+|+++.+..+
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~--- 106 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--- 106 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEE---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEE---
Confidence 3667999999999999999999997431 234456777788777655322
Q ss_pred cccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC---
Q 039945 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC--- 230 (531)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~--- 230 (531)
......++|||||||++|..++..++..+|++|||+|++.+.
T Consensus 107 -----------------------------------~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~ 151 (483)
T 3p26_A 107 -----------------------------------STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFES 151 (483)
T ss_dssp -----------------------------------ECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-----
T ss_pred -----------------------------------ecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcccc
Confidence 111268999999999999999999999999999999998762
Q ss_pred ---CCcchHHHHHHHHHcCCceEEEEEeccCCcc--HHHHHHHHHHHHHHHhcccC--CCCCEEEecccCccchHH----
Q 039945 231 ---PQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ--ENVAINQHEAIMKFIQGTVA--DGAPVVPISAQLKYNIDV---- 299 (531)
Q Consensus 231 ---~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~--~~~~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~gi~~---- 299 (531)
...|+++++.++..++++++|+|+||+|+.+ ....++..+++.++++..+. ...+++++||++|+|+++
T Consensus 152 ~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~ 231 (483)
T 3p26_A 152 GFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYT 231 (483)
T ss_dssp -CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCC
T ss_pred ccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcc
Confidence 3578999999999999888999999999986 44555666677776654333 257899999999999973
Q ss_pred -----------HHHHHHc---cCCC--CCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEec
Q 039945 300 -----------VCEYIVK---KIPI--PERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRP 363 (531)
Q Consensus 300 -----------L~~~L~~---~l~~--~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P 363 (531)
|++.|.. .+|. |....+.|++|+|+++|.+.+. .+.|+|++|+|.+|+|++||.|.++|
T Consensus 232 ~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~~v~~v~~~~~~-----~g~g~v~~G~v~~G~l~~gd~v~~~p 306 (483)
T 3p26_A 232 DEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKT-----SNDLALVSGKLESGSIQPGESLTIYP 306 (483)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEEEEEEEEC---C-----CSCCEEEEEEEEESEECTTCEEEEET
T ss_pred cccccccCCCCHHHHHHHHHhhcccccccccCCCceEEEEEEEEccCCc-----CCCceEEEEEEecceEccCCEEEEeC
Confidence 4455543 2333 5567789999999999986521 13789999999999999999999999
Q ss_pred CceecCCCCceeeccceeeeEEeeecc--------cceeEEecCceEEEeeecCccccccccccceeeccCCC-ccceeE
Q 039945 364 GIVVKDESGNIKCTPIYSRIVSLFAEQ--------NELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGS-LPEVFV 434 (531)
Q Consensus 364 ~~~~~~~~g~~~~~~~~~~V~si~~~~--------~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~-~p~~~~ 434 (531)
++ ..++|++|++++ .++++|.|||+|++.|+ ++...++.+|++|+.++. +|..++
T Consensus 307 ~~-------------~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~---~~~~~di~rG~vl~~~~~~~~~~~~ 370 (483)
T 3p26_A 307 SE-------------QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLR---KAYPEDIQNGDLAASVDYSSIHSAQ 370 (483)
T ss_dssp TT-------------EEEEEEEEEETTTC-----CCEESCEETTCEEEEEEE---SCCGGGCCTTCEEECTTCCCCEECS
T ss_pred CC-------------CeEEEEEEEEcCccccccccccccEECCCCEEEEEEE---ecccccCCceEEEEcCCCCCCceee
Confidence 85 357999999984 89999999999999998 788889999999999988 888999
Q ss_pred EEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEec-----------C--------c--eEEEE
Q 039945 435 ELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVK-----------N--------D--LAKLQ 493 (531)
Q Consensus 435 ~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~-----------~--------~--~v~~~ 493 (531)
.|+|++.||++ .++|..|+++++|+|+.++.|+|..+. . + .|+|.
T Consensus 371 ~f~a~v~~l~~--------------~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~~~~~~~l~~~~~~~v~~~ 436 (483)
T 3p26_A 371 CFVLELTTFDM--------------NRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIE 436 (483)
T ss_dssp EEEEEEEECSC--------------SSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEECCSCCSCBCSSCEEEEEEE
T ss_pred EEEEEEEEECC--------------CCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCcccccCccCcCCCCEEEEEEE
Confidence 99999999975 368999999999999999999999883 1 0 78888
Q ss_pred e---CCeeecccCC------EEEEEeccCCCceEEEEEEEeec
Q 039945 494 L---TSPVCTSRGE------KIALSRRVEKHWRLIGWGQIQAG 527 (531)
Q Consensus 494 l---~~p~~~~~g~------r~ilr~~~~~~~~tig~G~I~~~ 527 (531)
+ .+|+|++.+. ||+||+ .|+|||+|.|..=
T Consensus 437 ~~~~~~p~~~~~~~~~~~~G~f~l~~----~~~tv~~G~i~~~ 475 (483)
T 3p26_A 437 LIEVKRWIPLLTAHENDRLGRVVLRK----DGRTIAAGKISEI 475 (483)
T ss_dssp ECSCSSCCEECCTTTCTTTTEEEEEE----TTEEEEEEEEEEE
T ss_pred ECCCCCcEEEEecccCccCCCEEEEe----CCCEEEEEEEEEe
Confidence 8 7899999874 999997 8999999999863
No 14
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=1.3e-53 Score=454.97 Aligned_cols=346 Identities=23% Similarity=0.364 Sum_probs=287.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC----cCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ----TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLC 179 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~----~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (531)
+.++|+++|++|+|||||+++|++.. .+++.+|.++|+|+++.+..+..
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--------------------------- 70 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--------------------------- 70 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE---------------------------
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE---------------------------
Confidence 35899999999999999999999987 66788899999999987754311
Q ss_pred CCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCC
Q 039945 180 DVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDL 259 (531)
Q Consensus 180 ~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl 259 (531)
. .+.++|||||||++|.+++..++..+|++|||+|++++ ..+|+.+++.+++.++++. |+|+||+|+
T Consensus 71 --~---------~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g-~~~qt~e~l~~~~~~~ip~-IvviNK~Dl 137 (482)
T 1wb1_A 71 --E---------NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG-PKTQTGEHMLILDHFNIPI-IVVITKSDN 137 (482)
T ss_dssp --T---------TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC-SCHHHHHHHHHHHHTTCCB-CEEEECTTS
T ss_pred --C---------CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC-ccHHHHHHHHHHHHcCCCE-EEEEECCCc
Confidence 1 16899999999999999999999999999999999998 7999999999999999875 999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcc-cCCCCCEEEecccCccchHHHHHHHHccCCCC--CCCCCCCCEEEEEEeeeecCCCCcc
Q 039945 260 IQENVAINQHEAIMKFIQGT-VADGAPVVPISAQLKYNIDVVCEYIVKKIPIP--ERNFIDPPNMIVIRSFDVNKPGFEV 336 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~-~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~--~~~~~~~~~~~i~~~~~v~~~~~~~ 336 (531)
.+.+..+...+++.++++.. .....+++++||++|+|+++|+++|.+.++.| .++.+.|++|+|+++|++++
T Consensus 138 ~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g----- 212 (482)
T 1wb1_A 138 AGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKG----- 212 (482)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSS-----
T ss_pred ccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhcCccccccccccccccceeEEEecC-----
Confidence 98777777778888887654 34468999999999999999999999877655 66778899999999998765
Q ss_pred cCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCceEEEeeecCccccccc
Q 039945 337 DDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRAD 416 (531)
Q Consensus 337 ~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~ 416 (531)
.|+|++|+|.+|+|++||.|.++|++ ..++|++|+.++.++++|.|||+|++.++ +++..+
T Consensus 213 ---~G~v~~g~v~~G~l~~gd~v~~~p~~-------------~~~~V~~i~~~~~~v~~a~~G~~v~~~l~---~~~~~~ 273 (482)
T 1wb1_A 213 ---AGTVVTGTINKGIVKVGDELKVLPIN-------------MSTKVRSIQYFKESVMEAKAGDRVGMAIQ---GVDAKQ 273 (482)
T ss_dssp ---CCCEECCCCCBSCCCSSEEECCTTTC-------------CCEEECCBCGGGSCBCCCCSSCCCCEECS---SCCSSC
T ss_pred ---CceEEEEEEEEeEEeeCCEEEECCCC-------------cEEEEeEEEECCeEeeEecCCCEEEEEec---CCCHhh
Confidence 89999999999999999999999974 35799999999999999999999999987 777888
Q ss_pred cccceee-ccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEec---------
Q 039945 417 RLVGQVL-GEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVK--------- 486 (531)
Q Consensus 417 i~~G~vl-~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~--------- 486 (531)
+.+|++| +.++ .+..++.|+|++.|+++. +.+|..|+++++|+|+.++.|+|..+.
T Consensus 274 i~~Gdvl~~~~~-~~~~~~~~~a~v~~l~~~-------------~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~ 339 (482)
T 1wb1_A 274 IYRGXILTSKDT-KLQTVDKIVAKIKISDIF-------------KYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEE 339 (482)
T ss_dssp CCSSCBCCCTTC-CCCCEEEEEECCCCCSSC-------------CSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCC
T ss_pred ccccceEecCCC-CCceeeEEEEEEEEeccC-------------CcccCCCCEEEEEEcccEEEEEEEEEeccccccccc
Confidence 9999999 6665 456689999999999641 368999999999999999999999987
Q ss_pred ---C--------ceEEEEeCCeeecccCCEEEEEecc--CCCceEEEEEEEeec
Q 039945 487 ---N--------DLAKLQLTSPVCTSRGEKIALSRRV--EKHWRLIGWGQIQAG 527 (531)
Q Consensus 487 ---~--------~~v~~~l~~p~~~~~g~r~ilr~~~--~~~~~tig~G~I~~~ 527 (531)
. ..|+|+|.+|+|+++|+||+|||+. ...++|+|+|.|.+.
T Consensus 340 ~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~~tvg~G~v~~~ 393 (482)
T 1wb1_A 340 NIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTLRIXGHGLIEEF 393 (482)
T ss_dssp EEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSCCCCCBCCEEEC
T ss_pred cccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCceEeeEEEEEec
Confidence 1 1789999999999999999999722 123899999999875
No 15
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-52 Score=453.02 Aligned_cols=348 Identities=17% Similarity=0.208 Sum_probs=286.3
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCCCc----------------------------CccccceecceEeeecceeeeee
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGVQT----------------------------VRFKNELERNITIKLGYANAKIY 153 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~~~----------------------------~~~~~e~~~git~~~~~~~~~~~ 153 (531)
.++.++|+++|++|+|||||+|+|++... +.+..|+++|+|+++.+..+
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~--- 240 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--- 240 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE---
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE---
Confidence 46679999999999999999999986421 12235566788777654322
Q ss_pred cccCCCCCCCccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC---
Q 039945 154 KCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC--- 230 (531)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~--- 230 (531)
. ...+.++|||||||++|.+++..++..+|++|+|||++.+.
T Consensus 241 --------------------------~---------~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~ 285 (611)
T 3izq_1 241 --------------------------S---------THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFES 285 (611)
T ss_dssp --------------------------E---------CSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHT
T ss_pred --------------------------e---------cCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccc
Confidence 1 11268999999999999999999999999999999998641
Q ss_pred ---CCcchHHHHHHHHHcCCceEEEEEeccCCcc--HHHHHHHHHHHHHHHhcccC--CCCCEEEecccCccchHH----
Q 039945 231 ---PQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ--ENVAINQHEAIMKFIQGTVA--DGAPVVPISAQLKYNIDV---- 299 (531)
Q Consensus 231 ---~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~--~~~~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g~gi~~---- 299 (531)
..+|+.+|+.++..++++++|+|+||+|+.+ .....+..+++..+++..+. ...+++++||++|.|+++
T Consensus 286 ~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~ 365 (611)
T 3izq_1 286 GFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYT 365 (611)
T ss_dssp TCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTS
T ss_pred cchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCcc
Confidence 3579999999999999999999999999986 34455566677776654332 257999999999999974
Q ss_pred -----------HHHHHHccC---CC--CCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEec
Q 039945 300 -----------VCEYIVKKI---PI--PERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRP 363 (531)
Q Consensus 300 -----------L~~~L~~~l---~~--~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P 363 (531)
|++.|.... |. |.+..+.|++|+|.++|.+.+. .+.|+|++|+|.+|+|++||.|+++|
T Consensus 366 ~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V~~v~~~~~~-----~g~g~v~~G~V~~G~lk~Gd~v~~~p 440 (611)
T 3izq_1 366 DEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKT-----SNDLALVSGKLESGSIQPGESLTIYP 440 (611)
T ss_dssp CTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEECCEEECCSSS-----CSSSSEEEEEEEESEECTTCEEEETT
T ss_pred ccccccccCCcHHHHHHHHhhcccccCcccccccchhhheeeeeccCcc-----CCCeeEEEEEEEeceeccCCEEEEec
Confidence 566665332 22 3456788999999999986521 13789999999999999999999999
Q ss_pred CceecCCCCceeeccceeeeEEeeecc--------cceeEEecCceEEEeeecCccccccccccceeeccCCC-ccceeE
Q 039945 364 GIVVKDESGNIKCTPIYSRIVSLFAEQ--------NELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGS-LPEVFV 434 (531)
Q Consensus 364 ~~~~~~~~g~~~~~~~~~~V~si~~~~--------~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~-~p~~~~ 434 (531)
++ ..++|++|++++ .++++|.|||+|++.|+ ++...++.+|++|+.++. +|.+++
T Consensus 441 ~~-------------~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~---~~~~~di~rGdvl~~~~~~~~~~~~ 504 (611)
T 3izq_1 441 SE-------------QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLR---KAYPEDIQNGDLAASVDYSSIHSAQ 504 (611)
T ss_dssp TT-------------EEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEES---SCCTTSCCTTCEEBCSTTCSCCCBS
T ss_pred CC-------------ceEEEEEEEEcccccccccccccceecCCCcceEEee---eccHhhCcceEEccCCCCCCCceee
Confidence 85 357999999984 79999999999999998 788889999999999988 888999
Q ss_pred EEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeeceeeeEEEEEecC----------c-----------eEEEE
Q 039945 435 ELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMSTGARVLAVKN----------D-----------LAKLQ 493 (531)
Q Consensus 435 ~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~v~~i~~----------~-----------~v~~~ 493 (531)
.|.|++.||+| ..+|..|+++++|||+.++.|+|..+.. . .|+|.
T Consensus 505 ~f~a~v~~l~~--------------~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~~~~~~~l~~~d~a~v~~~ 570 (611)
T 3izq_1 505 CFVLELTTFDM--------------NRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIE 570 (611)
T ss_dssp CEEEEEEECSC--------------SSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBCTTCSCSSSSCCSEEEEEE
T ss_pred EEEEEEEEECC--------------CCCCCCCCEEEEEECCeEeeEEeeeeeeeecccccccccCccccCCCCEEEEEEE
Confidence 99999999975 3689999999999999999999998831 0 68899
Q ss_pred e---CCeeecccCC------EEEEEeccCCCceEEEEEEEee
Q 039945 494 L---TSPVCTSRGE------KIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 494 l---~~p~~~~~g~------r~ilr~~~~~~~~tig~G~I~~ 526 (531)
+ .+|+|++++. ||+||+ .++|||+|.|++
T Consensus 571 ~~~~~~pi~~e~~~~~~~~grf~lr~----~~~Tva~G~i~~ 608 (611)
T 3izq_1 571 LIEVKRWIPLLTAHENDRLGRVVLRK----DGRTIAAGKISE 608 (611)
T ss_dssp ESSCSSCBCCCCTTTCHHHHEEEEES----SSSEEEEEEEEE
T ss_pred ECCCCCceEEeecccCCCCCcEEEEe----CCCEEEEEEEEE
Confidence 9 7899999974 999996 789999999975
No 16
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=8.1e-51 Score=456.52 Aligned_cols=350 Identities=27% Similarity=0.368 Sum_probs=285.9
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCC-------------CcCccccceecceEeeecceeeeeecccCCCCCCCccccc
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKA 168 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~ 168 (531)
.++.++|+++||+|+|||||+++|++. ..+++.+|+++|+|+++.+..+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f------------------ 354 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY------------------ 354 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEE------------------
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEE------------------
Confidence 356799999999999999999999853 1244567888999987754221
Q ss_pred cCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 169 YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
....+.++|||||||++|..++..++..+|++|+|||++++ ..+|+++|+.++..++++
T Consensus 355 --------------------~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdG-v~~QTrEhL~ll~~lgIP 413 (1289)
T 3avx_A 355 --------------------DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLGRQVGVP 413 (1289)
T ss_dssp --------------------ECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTC-SCTTHHHHHHHHHHHTCS
T ss_pred --------------------cCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCcc-CcHHHHHHHHHHHHcCCC
Confidence 01126899999999999999999999999999999999998 789999999999889988
Q ss_pred eEEEEEeccCCcc-HHHHHHHHHHHHHHHhcccC--CCCCEEEecccCc--------cchHHHHHHHHccCCCCCCCCCC
Q 039945 249 HIIILQNKVDLIQ-ENVAINQHEAIMKFIQGTVA--DGAPVVPISAQLK--------YNIDVVCEYIVKKIPIPERNFID 317 (531)
Q Consensus 249 ~iIvviNK~Dl~~-~~~~~~~~~~i~~~l~~~~~--~~~~ii~iSa~~g--------~gi~~L~~~L~~~l~~~~~~~~~ 317 (531)
++|+|+||+|+.+ ....+...+++.++++..+. ...+++++||++| .|+++|+++|.+.+|.|.++.+.
T Consensus 414 ~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~~d~ 493 (1289)
T 3avx_A 414 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDK 493 (1289)
T ss_dssp CEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCGGGS
T ss_pred eEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCcccccc
Confidence 7899999999985 33344555677777765432 3579999999999 57999999999889988888899
Q ss_pred CCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEe
Q 039945 318 PPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAV 397 (531)
Q Consensus 318 ~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~ 397 (531)
|++|+|+++|.+++ +|+|++|+|.+|+|++||.|.++|.+. +..++|++|++++.++++|.
T Consensus 494 Pfr~pId~Vf~i~G--------~GtVvtGrV~sGtLkvGD~V~I~ps~~-----------~~~~kVksI~~~~~~v~eA~ 554 (1289)
T 3avx_A 494 PFLLPIEDVFSISG--------RGTVVTGRVERGIIKVGEEVEIVGIKE-----------TQKSTCTGVEMFRKLLDEGR 554 (1289)
T ss_dssp CCEEECCEEEEETT--------TEEEEEEECCBSEEETTCEEEEESSSS-----------CEEEEEEEEECSSCEESEEE
T ss_pred ceeeeccccccccC--------CcEEEEEEEeccEEecCCEEEEecCCC-----------ceeEEEEEEeecCceeeEEe
Confidence 99999999998764 899999999999999999999999731 13579999999999999999
Q ss_pred cCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEeecee
Q 039945 398 PGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIGSMS 477 (531)
Q Consensus 398 aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~ 477 (531)
|||+|++.++ +++..++.+|++|+.++. |...+.|.|+++||++..+. ...++..|+.+++|+++.+
T Consensus 555 AGd~Vgl~L~---GI~~~dI~RGdVL~~~~~-~~~~~~F~A~V~~L~~~egg---------~~~pi~~G~~p~l~igT~~ 621 (1289)
T 3avx_A 555 AGENVGVLLR---GIKREEIERGQVLAKPGT-IKPHTKFESEVYILSKDEGG---------RHTPFFKGYRPQFYFRTTD 621 (1289)
T ss_dssp TTCEEEEEES---SCCGGGCCTTCEEESTTS-CCEEEEEEEEEEECCGGGTS---------CSSCBCTTCCCEEECSSCE
T ss_pred cCCcceeEee---ecchhcCCcccEEecCCC-CccceeEEEEEEEEcccccc---------ccccccCCCceEEEEeeee
Confidence 9999999998 788899999999999876 56789999999999753111 1357999999999999999
Q ss_pred eeEEEEEecC---------ceEEEEeCCeeecccCCEEEEEeccCCCceEEEEEEEee
Q 039945 478 TGARVLAVKN---------DLAKLQLTSPVCTSRGEKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 478 ~~~~v~~i~~---------~~v~~~l~~p~~~~~g~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
++|+|..... ..|+|++.+|+|+++|+||+||+ .|+|||+|.|++
T Consensus 622 vtg~I~L~~~~~~L~~Gd~a~V~L~l~~Pi~ve~g~RFiLRd----~grTIG~G~V~~ 675 (1289)
T 3avx_A 622 VTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIRE----GGRTVGAGVVAK 675 (1289)
T ss_dssp EEEEEECCTTCCCBCTTCCCEEEEEEEEEEECCTTCEEEEEE----TTEEEEEEEEEE
T ss_pred EEEEEEECCCcccccCCCEEEEEEEECceEEEccCCEEEEEe----CCeEEEEEEEee
Confidence 9999983221 17899999999999999999996 789999999975
No 17
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1.6e-33 Score=304.64 Aligned_cols=263 Identities=24% Similarity=0.280 Sum_probs=193.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHC---CC---------cCccccceecceEeeecceeeeeecccCCCCCCCccccccC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISG---VQ---------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYG 170 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g---~~---------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 170 (531)
+..+||+++||+|||||||+++|+. .. .+.+..|+++|+|+......+.. ...
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~-~~~-------------- 68 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFY-KAK-------------- 68 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEE-ECT--------------
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEE-EcC--------------
Confidence 3468999999999999999999973 21 23456788999998765543211 000
Q ss_pred CCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceE
Q 039945 171 SGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHI 250 (531)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~i 250 (531)
+| ....++|||||||.+|...+.++++.+|++|+|+|++++ .+.|+.+++..+...+++ +
T Consensus 69 -----------dg-------~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~g-v~~qt~~~~~~a~~~~ip-i 128 (600)
T 2ywe_A 69 -----------DG-------NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQG-IEAQTVANFWKAVEQDLV-I 128 (600)
T ss_dssp -----------TS-------CEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTB-CCHHHHHHHHHHHHTTCE-E
T ss_pred -----------CC-------CeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCC-ccHHHHHHHHHHHHCCCC-E
Confidence 00 126899999999999999999999999999999999998 799999999888888865 8
Q ss_pred EEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeec
Q 039945 251 IILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVN 330 (531)
Q Consensus 251 IvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~ 330 (531)
|+|+||+|+.+.. ..+..+++.+.+ +....+++++||++|.|+++|+++|.+.+|.|..+.+.|+++.|++++
T Consensus 129 IvviNKiDl~~a~-~~~v~~el~~~l---g~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~--- 201 (600)
T 2ywe_A 129 IPVINKIDLPSAD-VDRVKKQIEEVL---GLDPEEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSY--- 201 (600)
T ss_dssp EEEEECTTSTTCC-HHHHHHHHHHTS---CCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEE---
T ss_pred EEEEeccCccccC-HHHHHHHHHHhh---CCCcccEEEEEeecCCCchHHHHHHHHhcccccccccCCcceeEEEEe---
Confidence 9999999998643 233444554443 122346999999999999999999999999998888999999998887
Q ss_pred CCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeee---cccceeEEecCceEEEeee
Q 039945 331 KPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFA---EQNELQFAVPGGLIGVGTT 407 (531)
Q Consensus 331 ~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~---~~~~v~~a~aG~~v~i~l~ 407 (531)
++++.|++++|+|.+|+|++||.|.++|++. ..+|..+.. .+.+++++.|||++.+..
T Consensus 202 -----~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~-------------~~~v~~i~~~~~~~~~v~~~~aGdi~~v~~- 262 (600)
T 2ywe_A 202 -----YDPYRGAVAFVRIFDGEVKPGDKIMLMSTGK-------------EYEVTEVGAQTPKMTKFDKLSAGDVGYIAA- 262 (600)
T ss_dssp -----EETTTEEEEEEEEEESEECTTCEEEETTTTE-------------EEECCEEEEESSSEEEESCEETTCEEEEES-
T ss_pred -----ecccceEEEEEEEEeCEEecCCEEEeccccc-------------eEeeecccccCCCceECCEEecCceeeeec-
Confidence 3556899999999999999999999998742 245555554 345789999999777642
Q ss_pred cCccc-cccccccceeeccCCCc
Q 039945 408 MDPTL-TRADRLVGQVLGEVGSL 429 (531)
Q Consensus 408 ~~~~~-~~~~i~~G~vl~~~~~~ 429 (531)
++ ...++.+|+.|+.++.+
T Consensus 263 ---gi~~~~~~~~GDtl~~~~~~ 282 (600)
T 2ywe_A 263 ---SIKDVRDIRIGDTITHAKNP 282 (600)
T ss_dssp ---SCCCTTSSCTTCEEEESSSC
T ss_pred ---cccchhhccCCCEEEeCCCc
Confidence 33 34578889999876543
No 18
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1.5e-32 Score=297.61 Aligned_cols=261 Identities=25% Similarity=0.253 Sum_probs=188.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC---C---------CcCccccceecceEeeecceeeeeecccCCCCCCCccccccCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG---V---------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGS 171 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g---~---------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 171 (531)
..+||+|+||+|||||||+++|+. . ..+.+..|+++|+|+......+.. ...
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~-~~~--------------- 66 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDY-KAS--------------- 66 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEE-ECT---------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEE-ecC---------------
Confidence 468999999999999999999974 1 123457888999999765543211 000
Q ss_pred CCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEE
Q 039945 172 GKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHII 251 (531)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iI 251 (531)
.| ....++|||||||.+|...+.++++.+|++|+|+|++++ ...|+.+++..+...++ |+|
T Consensus 67 ----------~g-------~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~g-v~~qt~~~~~~~~~~~i-piI 127 (599)
T 3cb4_D 67 ----------DG-------ETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG-VEAQTLANCYTAMEMDL-EVV 127 (599)
T ss_dssp ----------TS-------CEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTC-CCTHHHHHHHHHHHTTC-EEE
T ss_pred ----------CC-------CeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHHCCC-CEE
Confidence 00 126899999999999999999999999999999999998 79999999988888886 589
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecC
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNK 331 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~ 331 (531)
+|+||+|+.+.. ..+..+++.+.+. ....+++++||++|.|+++|+++|.+.+|.|..+.+.|+++.|++++.
T Consensus 128 vViNKiDl~~a~-~~~v~~ei~~~lg---~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~--- 200 (599)
T 3cb4_D 128 PVLNKIDLPAAD-PERVAEEIEDIVG---IDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWF--- 200 (599)
T ss_dssp EEEECTTSTTCC-HHHHHHHHHHHTC---CCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEE---
T ss_pred EeeeccCccccc-HHHHHHHHHHHhC---CCcceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccc---
Confidence 999999998643 2334455555442 234579999999999999999999999999988889999999988873
Q ss_pred CCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeee---cccceeEEecCceEEEeeec
Q 039945 332 PGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFA---EQNELQFAVPGGLIGVGTTM 408 (531)
Q Consensus 332 ~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~---~~~~v~~a~aG~~v~i~l~~ 408 (531)
++++|.+++|+|.+|+|++||.+.+.|++. ..+|..+.. ...+++++.|||++.+..
T Consensus 201 -----d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~-------------~~~v~~i~~~~~~~~~~~~~~aGdi~~~~~-- 260 (599)
T 3cb4_D 201 -----DNYLGVVSLIRIKNGTLRKGDKVKVMSTGQ-------------TYNADRLGIFTPKQVDRTELKCGEVGWLVC-- 260 (599)
T ss_dssp -----ETTTEEEEEEEEEESCEESSCEEEETTTCC-------------EEECCEEEEESSSEEECSEECTTCEEEEEC--
T ss_pred -----cccccEEEEEEEEeCEEecCCEEEeccccc-------------eeEEeeeeeccCCceECCEEcCCCeeEeec--
Confidence 456999999999999999999999998642 234555544 345789999999776632
Q ss_pred Cccc-cccccccceeeccCCC
Q 039945 409 DPTL-TRADRLVGQVLGEVGS 428 (531)
Q Consensus 409 ~~~~-~~~~i~~G~vl~~~~~ 428 (531)
++ ...++.+|+.++.++.
T Consensus 261 --gi~~~~~~~~GDtl~~~~~ 279 (599)
T 3cb4_D 261 --AIKDIHGAPVGDTLTLARN 279 (599)
T ss_dssp --CCSSGGGSCTTCEEEESSS
T ss_pred --cccccccCccCCEeeecCC
Confidence 23 2457788999876554
No 19
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=9.4e-33 Score=297.72 Aligned_cols=259 Identities=18% Similarity=0.203 Sum_probs=183.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH---C----------------CCcCccccceecceEeeecceeeeeecccCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS---G----------------VQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRP 163 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~---g----------------~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~ 163 (531)
.+.+||+|+||+|||||||..+|+ | ...|.++.|++||||+..+...+
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~------------- 95 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF------------- 95 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE-------------
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEE-------------
Confidence 346899999999999999999996 2 23466789999999998765432
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHH
Q 039945 164 MCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVE 243 (531)
Q Consensus 164 ~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~ 243 (531)
.|.+ ..|+|||||||.||..++.++++.+|++|+||||.+| +++||+..+..+.
T Consensus 96 ----------------~~~~---------~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~G-V~~qT~~v~~~a~ 149 (548)
T 3vqt_A 96 ----------------PYRD---------RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG-VEAQTRKLMDVCR 149 (548)
T ss_dssp ----------------EETT---------EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTB-SCHHHHHHHHHHH
T ss_pred ----------------EECC---------EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCC-cccccHHHHHHHH
Confidence 2332 7899999999999999999999999999999999999 8999999999999
Q ss_pred HcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhc---------------------------------------------
Q 039945 244 IMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQG--------------------------------------------- 278 (531)
Q Consensus 244 ~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~--------------------------------------------- 278 (531)
..++| .|+++||||+...+ .....+++++.+..
T Consensus 150 ~~~lp-~i~fINK~Dr~~ad-~~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~ 227 (548)
T 3vqt_A 150 MRATP-VMTFVNKMDREALH-PLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHG 227 (548)
T ss_dssp HTTCC-EEEEEECTTSCCCC-HHHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCS
T ss_pred HhCCc-eEEEEecccchhcc-hhHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccc
Confidence 99987 68899999997543 23344444443310
Q ss_pred ------------------------------------ccCCCCCEEEecccCccchHHHHHHHHccCCCCCC---------
Q 039945 279 ------------------------------------TVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPER--------- 313 (531)
Q Consensus 279 ------------------------------------~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~--------- 313 (531)
......|+++.||+++.|++.|+++|.+++|.|..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~ 307 (548)
T 3vqt_A 228 ADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVE 307 (548)
T ss_dssp TTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEEC
T ss_pred cchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccC
Confidence 00123589999999999999999999999998853
Q ss_pred CCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeee----c
Q 039945 314 NFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFA----E 389 (531)
Q Consensus 314 ~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~----~ 389 (531)
+.+.||...|++.+.- ..++++|.+.++||.+|+|+.|+.|...-.+. ..+|..+.. .
T Consensus 308 ~~~~p~~a~vfKi~~~-----~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~-------------~~rv~~l~~~~g~~ 369 (548)
T 3vqt_A 308 PGEEAFTGVVFKIQAN-----MDKAHRDRMAFLRICSGTFTRGMRLKHHRTGK-------------DVTVANATIFMAQD 369 (548)
T ss_dssp TTCSSCEEEEEEEECC------------CEEEEEEEESCEETTCEEEETTTTE-------------EEECTTCEECCCSS
T ss_pred CCCcCceEEEEEEEcc-----CCcCCCCeEEEEEEecceecCCCEEEeecccc-------------ccccchhhhhcccc
Confidence 3467888888665521 12357999999999999999999999754321 234444433 2
Q ss_pred ccceeEEecCceEEEeeecCccccccccccceeeccCC
Q 039945 390 QNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVG 427 (531)
Q Consensus 390 ~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~ 427 (531)
+.++++|.|||+|++. ++ .+...|+.||..+
T Consensus 370 ~~~v~~a~AGdIvai~-----gl--~~~~~GDTl~~~~ 400 (548)
T 3vqt_A 370 RTGVEEAFPGDIIGIP-----NH--GTIKIGDTFTESK 400 (548)
T ss_dssp CCSSCEECTTCEEEEE-----CS--SCCCTTCEEESSS
T ss_pred ccccCEEecCCEEEec-----CC--ccCccCCEecCCC
Confidence 3579999999999973 22 2456677777654
No 20
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.97 E-value=1.5e-33 Score=309.80 Aligned_cols=238 Identities=25% Similarity=0.299 Sum_probs=187.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH---CC------------CcCccccceecceEeeecceeeeeecccCCCCCCCcccccc
Q 039945 105 TINIGTIGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAY 169 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~---g~------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~ 169 (531)
.+||+|+||+|||||||..+|+ |. ..|.++.|++||||+..+..
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~--------------------- 60 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT--------------------- 60 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCC---------------------
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeE---------------------
Confidence 5799999999999999999996 21 24566789999999977542
Q ss_pred CCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce
Q 039945 170 GSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH 249 (531)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~ 249 (531)
++.|.+ ..|+|||||||.||..++.++++.+|++|+||||.+| +++||+.++.++...++|+
T Consensus 61 --------~~~~~~---------~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~G-V~~qT~~v~~~a~~~~lp~ 122 (638)
T 3j25_A 61 --------SFQWEN---------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG-VQAQTRILFHALRKMGIPT 122 (638)
T ss_dssp --------CCBCSS---------CBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCT-TCSHHHHHHHHHHHHTCSC
T ss_pred --------EEEECC---------EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCC-CcHHHHHHHHHHHHcCCCe
Confidence 234443 6899999999999999999999999999999999999 8999999999999999885
Q ss_pred EEEEEeccCCccHHHHHHHHHHHHHHH------------------------------------------hc---------
Q 039945 250 IIILQNKVDLIQENVAINQHEAIMKFI------------------------------------------QG--------- 278 (531)
Q Consensus 250 iIvviNK~Dl~~~~~~~~~~~~i~~~l------------------------------------------~~--------- 278 (531)
|+++||||+...+ .....+++++.+ .+
T Consensus 123 -i~~INKmDr~~a~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~ 200 (638)
T 3j25_A 123 -IFFINKIDQNGID-LSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELE 200 (638)
T ss_dssp -EECCEECCSSSCC-SHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHH
T ss_pred -EEEEeccccccCC-HHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHH
Confidence 7889999987432 111222222111 00
Q ss_pred -------ccCCCCCEEEecccCccchHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEee
Q 039945 279 -------TVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRG 351 (531)
Q Consensus 279 -------~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G 351 (531)
......|+++.||+++.|++.|+++|.+.+|.|....+.|+.+.|++++ .|+++|.++++||.+|
T Consensus 201 ~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~~~~~~~~~Vfk~~--------~d~~~G~la~~RV~sG 272 (638)
T 3j25_A 201 QEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHRGPSELCGNVFKIE--------YTKKRQRLAYIRLYSG 272 (638)
T ss_dssp HHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGGSCCCCCBEEBCCC--------CCSTTCCCCBCCBSSB
T ss_pred HHHhhhhcccccccccccccccCCCchhHhhhhhccccCcccchhhhhcceeeeee--------eeccCceEEEEEEEcC
Confidence 0123578999999999999999999999999998888889998885543 4677999999999999
Q ss_pred eeccCCEEEEecCceecCCCCceeeccceeeeEEeee----cccceeEEecCceEEEe
Q 039945 352 VLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFA----EQNELQFAVPGGLIGVG 405 (531)
Q Consensus 352 ~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~----~~~~v~~a~aG~~v~i~ 405 (531)
+|+.||.|.+.... ..+|..+.. ...++++|.||++|++.
T Consensus 273 ~l~~g~~v~~~~~~--------------~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 316 (638)
T 3j25_A 273 VLHLRDSVRVSEKE--------------KIKVTEMYTSINGELCKIDRAYSGEIVILQ 316 (638)
T ss_dssp CCCSCCCSSSCCCC--------------CSSBCCCCSSCCCCBSCCCTTBCCCCSCCC
T ss_pred cccCCCccccccCc--------------ceeEEeeecccccccccccccccceEEEEe
Confidence 99999998754331 233444433 34578999999998764
No 21
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.97 E-value=2.8e-31 Score=284.75 Aligned_cols=257 Identities=18% Similarity=0.189 Sum_probs=191.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHC-------------------CCcCccccceecceEeeecceeeeeecccCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISG-------------------VQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRP 163 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g-------------------~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~ 163 (531)
...++|+|+||+|||||||+++|++ ...+.+..|+++|+|+......+
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~------------- 77 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQF------------- 77 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEE-------------
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEE-------------
Confidence 3458999999999999999999961 11223445667788775543221
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHH
Q 039945 164 MCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVE 243 (531)
Q Consensus 164 ~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~ 243 (531)
.+. ...++|||||||.+|...+.+.++.+|++|+|+|++.+ ...++..++..+.
T Consensus 78 ----------------~~~---------~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g-~~~~t~~~~~~~~ 131 (528)
T 3tr5_A 78 ----------------PYK---------DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG-VEPRTIKLMEVCR 131 (528)
T ss_dssp ----------------EET---------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-SCHHHHHHHHHHH
T ss_pred ----------------EeC---------CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHH
Confidence 111 27899999999999999999999999999999999998 7999999998888
Q ss_pred HcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcc--------------------------------------------
Q 039945 244 IMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGT-------------------------------------------- 279 (531)
Q Consensus 244 ~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~-------------------------------------------- 279 (531)
..++ |+|+|+||+|+..... .+..+++.+.+...
T Consensus 132 ~~~i-PiivviNK~Dl~~~~~-~~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~ 209 (528)
T 3tr5_A 132 LRHT-PIMTFINKMDRDTRPS-IELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEG 209 (528)
T ss_dssp TTTC-CEEEEEECTTSCCSCH-HHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEEC
T ss_pred HcCC-CEEEEEeCCCCccccH-HHHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccc
Confidence 8886 5899999999975422 22334444433210
Q ss_pred -------------------------------------cCCCCCEEEecccCccchHHHHHHHHccCCCCCCC--------
Q 039945 280 -------------------------------------VADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERN-------- 314 (531)
Q Consensus 280 -------------------------------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~-------- 314 (531)
....+|++++||++|.|+++|+++|.+.+|.|...
T Consensus 210 ~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~ 289 (528)
T 3tr5_A 210 INNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVK 289 (528)
T ss_dssp TTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBC
T ss_pred cchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeC
Confidence 01223899999999999999999999999987532
Q ss_pred -CCCCCEEEEEEeeeecCCCCcccC-CCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeee----
Q 039945 315 -FIDPPNMIVIRSFDVNKPGFEVDD-IRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFA---- 388 (531)
Q Consensus 315 -~~~~~~~~i~~~~~v~~~~~~~~~-~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~---- 388 (531)
.+.||...|+++... +|+ ++|+++++||.+|+|+.||.|...+.+ ...+|.++..
T Consensus 290 ~~~~~~~~~VFKi~~~------~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~-------------~~~rv~~~~~~~~~ 350 (528)
T 3tr5_A 290 PEEEKFSGFVFKIQAN------MDPGHRDRIAFLRIASGQYQKGMKAYHVRLK-------------KEIQINNALTFMAG 350 (528)
T ss_dssp TTSSSCEEEEEEEEEC------CC-CCCCEEEEEEEEESCEETTEEEEETTTT-------------EEEEESSCBCCBTT
T ss_pred CCcccceeEEEEEecc------cCccCCceEEEEEEecCeEcCCCEEEecCCC-------------ceEEEeeeEEEeCC
Confidence 247888888665421 355 789999999999999999999988764 2356666654
Q ss_pred cccceeEEecCceEEEeeecCccccccccccceeeccC
Q 039945 389 EQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEV 426 (531)
Q Consensus 389 ~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~ 426 (531)
.+.++++|.|||++++. ++ .++..|+.||..
T Consensus 351 ~~~~v~~a~aGdI~~~~-----~l--~~~~~GDtl~~~ 381 (528)
T 3tr5_A 351 KRENAEEAWPGDIIGLH-----NH--GTIQIGDTFTQG 381 (528)
T ss_dssp CSSCCSEECTTCEEEEE-----ES--SSCCTTCEEESS
T ss_pred CeeECCEECCCCEEEEc-----CC--CCCccCCEEcCC
Confidence 35689999999999872 11 245567777653
No 22
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.97 E-value=7.1e-31 Score=292.34 Aligned_cols=263 Identities=20% Similarity=0.249 Sum_probs=183.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH---------CC------CcCccccceecceEeeecceeeeeecccCCCCCCCcccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS---------GV------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYK 167 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~---------g~------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r 167 (531)
.+.+||+|+||++||||||..+|+ |. ..|.++.|++||||+..+..++..
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~--------------- 75 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFW--------------- 75 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEE---------------
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEe---------------
Confidence 356899999999999999999996 11 245667899999999876654321
Q ss_pred ccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC
Q 039945 168 AYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL 247 (531)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~ 247 (531)
.+ ......++.|+|||||||.||..++.++++.+|++|+||||.+| ++.||+..+..+...++
T Consensus 76 --------------~~--~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveG-V~~qT~~v~~~a~~~~l 138 (709)
T 4fn5_A 76 --------------KG--SRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSG-VEPQSETVWRQANKYGV 138 (709)
T ss_dssp --------------CC--TTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTC-SCHHHHHHHHHHHHHTC
T ss_pred --------------cc--CcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCC-CchhHHHHHHHHHHcCC
Confidence 10 00011127899999999999999999999999999999999999 89999999999999998
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHHHHHHhc-------------------------------------------------
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAIMKFIQG------------------------------------------------- 278 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~------------------------------------------------- 278 (531)
| .|+++||||+...+ .....+++.+.+..
T Consensus 139 p-~i~~iNKiDr~~a~-~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 216 (709)
T 4fn5_A 139 P-RIVYVNKMDRQGAN-FLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKD 216 (709)
T ss_dssp C-EEEEEECSSSTTCC-HHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHH
T ss_pred C-eEEEEccccccCcc-HHHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHH
Confidence 7 58899999986432 12222222222110
Q ss_pred -------------------------------------------ccCCCCCEEEecccCccchHHHHHHHHccCCCCC---
Q 039945 279 -------------------------------------------TVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPE--- 312 (531)
Q Consensus 279 -------------------------------------------~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~--- 312 (531)
......|+++.||.++.|+..|++++.+++|.|.
T Consensus 217 ~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~ 296 (709)
T 4fn5_A 217 LAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIP 296 (709)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccc
Confidence 0123468899999999999999999999999883
Q ss_pred -----------------CCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCcee
Q 039945 313 -----------------RNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIK 375 (531)
Q Consensus 313 -----------------~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~ 375 (531)
.+.+.|+.+.|++.+ .|+++|.+.++||.+|+|+.||+|+....+ .
T Consensus 297 ~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~--------~d~~~G~la~~RV~sGtl~~G~~v~~~~~~----~----- 359 (709)
T 4fn5_A 297 AIKGVSPDDETVEDERHADDNEPFSSLAFKIA--------TDPFVGTLTFARVYSGVLSSGDSVLNSVKG----K----- 359 (709)
T ss_dssp CEECBCCC-CCSCCEECSCTTSCCEEEEEECC--------CBTTTBCCCEEEEEESCEETTCBCBCTTTC----C-----
T ss_pred cccccCCccccccccccCCccCcceEEEEEee--------cccCCCceEEEeccCCCCCCCCEEEEecCC----c-----
Confidence 345788999996654 466799999999999999999999743221 1
Q ss_pred eccceeeeEEeee----cccceeEEecCceEEEeeecCccccccccccceeeccCC
Q 039945 376 CTPIYSRIVSLFA----EQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVG 427 (531)
Q Consensus 376 ~~~~~~~V~si~~----~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~ 427 (531)
..+|..+.. ...++++|.||++|++. ++ .++..|+.|++.+
T Consensus 360 ----~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~-----Gl--~~~~~gdTl~~~~ 404 (709)
T 4fn5_A 360 ----KERVGRMVQMHANQREEIKEVRAGDIAALI-----GM--KDVTTGDTLCSIE 404 (709)
T ss_dssp ----CCBCCCEECCCSSCCCEESEECTTCEEEEC-----SC--SSCCTTCEEECSS
T ss_pred ----EEeecceeEeecceeeEeeeecCCCeeeec-----CC--CcCccCCEecCCC
Confidence 123333332 34689999999999983 33 2466788777654
No 23
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.97 E-value=4.2e-30 Score=275.95 Aligned_cols=258 Identities=17% Similarity=0.187 Sum_probs=183.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC-------------------cCccccceecceEeeecceeeeeecccCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ-------------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRP 163 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~-------------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~ 163 (531)
...++|+++||+|||||||+++|++.. .+.+..|+++|+|+......+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~------------- 77 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF------------- 77 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEE-------------
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEE-------------
Confidence 345899999999999999999998421 122345556666654432211
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHH
Q 039945 164 MCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVE 243 (531)
Q Consensus 164 ~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~ 243 (531)
.+. ...++|||||||.+|...+.+++..+|++|+|+|++.+ ...++.+++..+.
T Consensus 78 ----------------~~~---------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g-~~~~t~~~~~~~~ 131 (529)
T 2h5e_A 78 ----------------PYH---------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG-VEDRTRKLMEVTR 131 (529)
T ss_dssp ----------------EET---------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-SCHHHHHHHHHHT
T ss_pred ----------------EEC---------CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc-chHHHHHHHHHHH
Confidence 111 27899999999999999999999999999999999998 7899999998888
Q ss_pred HcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhc----------------------------c----------------
Q 039945 244 IMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQG----------------------------T---------------- 279 (531)
Q Consensus 244 ~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~----------------------------~---------------- 279 (531)
..+++ +++|+||+|+..... .+..+++.+.+.. +
T Consensus 132 ~~~ip-iivviNK~Dl~~~~~-~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~ 209 (529)
T 2h5e_A 132 LRDTP-ILTFMNKLDRDIRDP-MELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKG 209 (529)
T ss_dssp TTTCC-EEEEEECTTSCCSCH-HHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECC
T ss_pred HcCCC-EEEEEcCcCCccccH-HHHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCC
Confidence 77865 899999999975432 2233333333210 0
Q ss_pred --------------------------------------cCCCCCEEEecccCccchHHHHHHHHccCCCCCCC-------
Q 039945 280 --------------------------------------VADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERN------- 314 (531)
Q Consensus 280 --------------------------------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~------- 314 (531)
.....|+++.||++|.|++.|+++|.+++|.|...
T Consensus 210 ~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~ 289 (529)
T 2h5e_A 210 LNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTV 289 (529)
T ss_dssp SSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEE
T ss_pred CCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCccccccccc
Confidence 01234899999999999999999999999988532
Q ss_pred --CCCCCEEEEEEeeeecCCCCccc-CCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeec--
Q 039945 315 --FIDPPNMIVIRSFDVNKPGFEVD-DIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAE-- 389 (531)
Q Consensus 315 --~~~~~~~~i~~~~~v~~~~~~~~-~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~-- 389 (531)
.+.||.+.|+++.. ..| +++|++++|||.+|+|+.||.|.+.|.+ ...+|.+|+..
T Consensus 290 ~~~~~~~~~~vfKi~~------~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~-------------~~~~v~~i~~~~g 350 (529)
T 2h5e_A 290 EASEDKFTGFVFKIQA------NMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTA-------------KDVVISDALTFMA 350 (529)
T ss_dssp CTTCCSCEEEEEEECS------SCCSSSSCCCEEEEEEESCEETTCEEEETTTT-------------EEEECSCEECCCC
T ss_pred CCCCCCeEEEEEEEee------ccCcCCCceEEEEEEecCeEcCCCEEEEeeCC-------------CEEEeceeeEEeC
Confidence 14678887754431 112 3589999999999999999999998864 24678788753
Q ss_pred --ccceeEEecCceEEEeeecCccccccccccceeeccCC
Q 039945 390 --QNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVG 427 (531)
Q Consensus 390 --~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~ 427 (531)
+.++++|.|||+|++. ++ +++..|+.|+.++
T Consensus 351 ~~~~~v~~a~aGdiv~i~-----~l--~~~~~Gdtl~~~~ 383 (529)
T 2h5e_A 351 GDRSHVEEAYPGDILGLH-----NH--GTIQIGDTFTQGE 383 (529)
T ss_dssp -----CCEECTTCEEEEC-----CS--SCCCTTCEEESSC
T ss_pred CCceEcceECCCCEEEEe-----cc--CCCccCCEeecCC
Confidence 5689999999999884 22 3566788887755
No 24
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.97 E-value=2.1e-29 Score=279.50 Aligned_cols=263 Identities=19% Similarity=0.203 Sum_probs=196.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC---------------CcCccccceecceEeeecceeeeeecccCCCCCCCcccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV---------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYK 167 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~---------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r 167 (531)
...+||+|+||+|||||||+++|+.. ..+.+..|+++|+|+...+..+.....
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~------------ 75 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGM------------ 75 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCc------------
Confidence 34589999999999999999999631 123445677899998776543211000
Q ss_pred ccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC
Q 039945 168 AYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL 247 (531)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~ 247 (531)
... .....++|||||||.+|...+.++++.+|++|+|+|++.+ ...++..++..+...++
T Consensus 76 ------------~~~-------~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-v~~qt~~~~~~~~~~~i 135 (704)
T 2rdo_7 76 ------------AKQ-------YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-VQPQSETVWRQANKYKV 135 (704)
T ss_pred ------------ccc-------CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC-CcHHHHHHHHHHHHcCC
Confidence 000 0126899999999999999999999999999999999998 78899999988888886
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHHHHHHhcc------------------------------------------------
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAIMKFIQGT------------------------------------------------ 279 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~------------------------------------------------ 279 (531)
+ +++|+||+|+...+ ..+..+++++.+...
T Consensus 136 p-~ilviNKiD~~~~~-~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 213 (704)
T 2rdo_7 136 P-RIAFVNKMDRMGAN-FLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVE 213 (704)
T ss_pred C-EEEEEeCCCccccc-HHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHH
Confidence 5 78899999987542 223333333322100
Q ss_pred --------------------------------------------cCCCCCEEEecccCccchHHHHHHHHccCCCCCC--
Q 039945 280 --------------------------------------------VADGAPVVPISAQLKYNIDVVCEYIVKKIPIPER-- 313 (531)
Q Consensus 280 --------------------------------------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~-- 313 (531)
....+|+++.||+++.|++.|+++|.+++|.|..
T Consensus 214 ~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~ 293 (704)
T 2rdo_7 214 LANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVP 293 (704)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcc
Confidence 0123589999999999999999999999998853
Q ss_pred ------------------CCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCcee
Q 039945 314 ------------------NFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIK 375 (531)
Q Consensus 314 ------------------~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~ 375 (531)
+.+.|+.+.|++++. ++++|.+++|||.+|+|+.||.|+..+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~--------d~~~G~~~~~RV~sG~l~~g~~v~~~~~~---------- 355 (704)
T 2rdo_7 294 AINGILDDGKDTPAERHASDDEPFSALAFKIAT--------DPFVGNLTFFRVYSGVVNSGDTVLNSVKA---------- 355 (704)
T ss_pred cccccCCcccccccccccCCCCceEEEEEEEEE--------cCCCceEEEEEEEeeeecCCCEEEeCCCC----------
Confidence 146788999988773 55689999999999999999999976542
Q ss_pred eccceeeeEEeee----cccceeEEecCceEEEeeecCccccccccccceeeccCC
Q 039945 376 CTPIYSRIVSLFA----EQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVG 427 (531)
Q Consensus 376 ~~~~~~~V~si~~----~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~ 427 (531)
...+|.+|.. ...++++|.||+++++. ++ ++...|+.|++++
T Consensus 356 ---~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~-----gl--~~~~~GdTl~~~~ 401 (704)
T 2rdo_7 356 ---ARERFGRIVQMHANKREEIKEVRAGDIAAAI-----GL--KDVTTGDTLCDPD 401 (704)
T ss_pred ---cEEEeceEEEEeCCCceEcceeCCCCEEEEe-----Cc--ccCccCCEEeCCC
Confidence 1345655553 35689999999999984 22 2457788887654
No 25
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.97 E-value=3.1e-32 Score=291.04 Aligned_cols=253 Identities=22% Similarity=0.301 Sum_probs=190.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
..+|+++||+|||||||+++|++... ......++|+++.+. .+.+.+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~---~~~~~~giT~~i~~~-----------------------------~v~~~~- 50 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQV---AAMEAGGITQHIGAF-----------------------------LVSLPS- 50 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHH---HHSSSCCBCCCTTSC-----------------------------CBCSSC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc---ccccCCceeEEEeEE-----------------------------EEEeCC-
Confidence 36789999999999999999986431 222345666655432 112211
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHH
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENV 264 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~ 264 (531)
...++|||||||++|...+.+++..+|++|||+|++++ ..+|+.+++..+...++| +|+|+||+|+.+...
T Consensus 51 -------g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg-~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~ 121 (537)
T 3izy_P 51 -------GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG-VMKQTVESIQHAKDAHVP-IVLAINKCDKAEADP 121 (537)
T ss_dssp -------SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC-CCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSC
T ss_pred -------CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC-ccHHHHHHHHHHHHcCCc-EEEEEecccccccch
Confidence 15789999999999999999999999999999999998 899999999999988865 899999999975321
Q ss_pred HHHHHHHHHHH--HhcccCCCCCEEEecccCccchHHHHHHHHccCC--CCCCCCCCCCEEEEEEeeeecCCCCcccCCC
Q 039945 265 AINQHEAIMKF--IQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP--IPERNFIDPPNMIVIRSFDVNKPGFEVDDIR 340 (531)
Q Consensus 265 ~~~~~~~i~~~--l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~--~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~ 340 (531)
....+++.+. .........+++++||++|.|+++|+++|...++ .+..+.+.|++++|+++|... ++
T Consensus 122 -~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~--------g~ 192 (537)
T 3izy_P 122 -EKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDK--------GR 192 (537)
T ss_dssp -CSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCT--------TC
T ss_pred -HHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeC--------CC
Confidence 0111112211 0011123468999999999999999999986543 345566789999999998544 48
Q ss_pred ceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecc-cceeEEecCceEEEeeecCcccccccccc
Q 039945 341 GGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQ-NELQFAVPGGLIGVGTTMDPTLTRADRLV 419 (531)
Q Consensus 341 G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~-~~v~~a~aG~~v~i~l~~~~~~~~~~i~~ 419 (531)
|+|++|+|.+|+|++||.+..++ ...+|++|+.++ .++++|.||++|++. ++. ....+
T Consensus 193 G~V~~g~V~~G~l~~Gd~v~~g~---------------~~~kVr~i~~~~g~~v~~A~~G~~V~i~-----g~~-~~~~~ 251 (537)
T 3izy_P 193 GPVTTAIIQRGTLRKGSILVAGK---------------SWAKVRLMFDENGRAVNEAYPSMPVGII-----GWR-DLPSA 251 (537)
T ss_dssp CCCEEEEEEEECCSSEEEECCSS---------------CCEEEEEEEECCCCCSCCSCCSTTCCCC-----SSE-EEEEE
T ss_pred ceEEEEEEecCEEEcCCEEEeCC---------------ceEEEEEEEcCCCCCCcEEcCCCEEEEE-----CCC-CCCCC
Confidence 99999999999999999875322 257999999986 689999999999873 333 23478
Q ss_pred ceeeccCCCc
Q 039945 420 GQVLGEVGSL 429 (531)
Q Consensus 420 G~vl~~~~~~ 429 (531)
|++++..++.
T Consensus 252 Gd~l~~~~~~ 261 (537)
T 3izy_P 252 GDEILEVESE 261 (537)
T ss_dssp ESSCCSCCSS
T ss_pred CCEEEecCCh
Confidence 9999776544
No 26
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.97 E-value=3.8e-31 Score=280.32 Aligned_cols=250 Identities=21% Similarity=0.263 Sum_probs=186.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+.++|+++||+|||||||+++|++.. +.....+|+|++++.. .+.+.+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~---v~~~e~~GIT~~i~~~-----------------------------~v~~~~ 50 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK---VASGEAGGITQHIGAY-----------------------------HVETEN 50 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH---HSBTTBCCCCCCSSCC-----------------------------CCCTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC---CccccCCCeeEeEEEE-----------------------------EEEECC
Confidence 34689999999999999999998632 1223356788776542 122222
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHH
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~ 263 (531)
..++|||||||++|...+.+++..+|++|||+|++++ ..+|+.+++..+...++| +|+++||+|+.+.+
T Consensus 51 ---------~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g-~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~ 119 (501)
T 1zo1_I 51 ---------GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG-VMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEAD 119 (501)
T ss_dssp ---------SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB-SCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTC
T ss_pred ---------EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC-ccHHHHHHHHHHHhcCce-EEEEEEeccccccC
Confidence 5789999999999999999999999999999999998 799999999999888876 99999999997532
Q ss_pred HHHHHHHHHHH--HHhcccCCCCCEEEecccCccchHHHHHHHHccC--CCCCCCCCCCCEEEEEEeeeecCCCCcccCC
Q 039945 264 VAINQHEAIMK--FIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI--PIPERNFIDPPNMIVIRSFDVNKPGFEVDDI 339 (531)
Q Consensus 264 ~~~~~~~~i~~--~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l--~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~ 339 (531)
. ....+++.+ ++........+++++||++|+|+++|+++|.... ..+..+.+.|+.++|+++|... +
T Consensus 120 ~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~--------g 190 (501)
T 1zo1_I 120 P-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDK--------G 190 (501)
T ss_dssp C-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECS--------S
T ss_pred H-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhhhhhhccccccccccccceEEEEEeC--------C
Confidence 1 000000000 0001111246899999999999999999997542 2344556778899999998543 4
Q ss_pred CceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeec-ccceeEEecCceEEEeeecCccccccccc
Q 039945 340 RGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAE-QNELQFAVPGGLIGVGTTMDPTLTRADRL 418 (531)
Q Consensus 340 ~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~~~~i~ 418 (531)
+|++++|+|.+|+|++||.+++++. ..+|++|+.. +.++++|.||+.|.+. ++. ....
T Consensus 191 ~G~v~~~~V~~Gtlk~Gd~v~~g~~---------------~~kVr~i~~~~g~~v~~a~~g~~V~i~-----gl~-~~~~ 249 (501)
T 1zo1_I 191 RGPVATVLVREGTLHKGDIVLCGFE---------------YGRVRAMRNELGQEVLEAGPSIPVEIL-----GLS-GVPA 249 (501)
T ss_dssp SSEEEEEEEEESBCCTTCEEEEEBS---------------SCEEEEECCTTTTSEEEECCSSCSSSE-----EEC-SCCC
T ss_pred cEEEEEEEEEeeEEecCCEEEEccc---------------eeEEEEEEecCCCcCcEeccCCcEEEe-----CCC-CCCC
Confidence 8999999999999999999998653 4789999864 5689999999998763 221 1134
Q ss_pred cceeeccC
Q 039945 419 VGQVLGEV 426 (531)
Q Consensus 419 ~G~vl~~~ 426 (531)
.|++++..
T Consensus 250 ~Gd~~~~~ 257 (501)
T 1zo1_I 250 AGDEVTVV 257 (501)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEec
Confidence 67777543
No 27
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.96 E-value=1.1e-28 Score=273.51 Aligned_cols=260 Identities=19% Similarity=0.246 Sum_probs=183.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH---CC------------CcCccccceecceEeeecceeeeeecccCCCCCCCcccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS---GV------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYK 167 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~---g~------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r 167 (531)
...++|+|+||+|||||||+++|+ |. ..+.+..|+++++|+......+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~----------------- 72 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC----------------- 72 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEE-----------------
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEE-----------------
Confidence 345899999999999999999998 22 1233456667788776544221
Q ss_pred ccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC
Q 039945 168 AYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL 247 (531)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~ 247 (531)
.+. ...++|||||||.+|...+.+++..+|++|+|+|++.+ ...++...+..+...++
T Consensus 73 ------------~~~---------~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g-~~~~t~~~~~~~~~~~~ 130 (691)
T 1dar_A 73 ------------FWK---------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG-VEPQSETVWRQAEKYKV 130 (691)
T ss_dssp ------------EET---------TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTC-SCHHHHHHHHHHHHTTC
T ss_pred ------------EEC---------CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCC-cchhhHHHHHHHHHcCC
Confidence 111 16899999999999999999999999999999999998 78899998888888886
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHHHHHHhcc------------------------------------------------
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAIMKFIQGT------------------------------------------------ 279 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~------------------------------------------------ 279 (531)
+ +++|+||+|+...+ .....+++.+.+...
T Consensus 131 p-~ivviNKiD~~~~~-~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 208 (691)
T 1dar_A 131 P-RIAFANKMDKTGAD-LWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQ 208 (691)
T ss_dssp C-EEEEEECTTSTTCC-HHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHH
T ss_pred C-EEEEEECCCcccCC-HHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHH
Confidence 5 78999999997532 223333333322100
Q ss_pred -------------------------------------------cCCCCCEEEecccCccchHHHHHHHHccCCCCCC---
Q 039945 280 -------------------------------------------VADGAPVVPISAQLKYNIDVVCEYIVKKIPIPER--- 313 (531)
Q Consensus 280 -------------------------------------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~--- 313 (531)
....+|+++.||++|.|++.|+++|.+++|.|..
T Consensus 209 ~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~ 288 (691)
T 1dar_A 209 AREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPP 288 (691)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCC
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhccc
Confidence 0112589999999999999999999999998864
Q ss_pred ---------------CCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeecc
Q 039945 314 ---------------NFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTP 378 (531)
Q Consensus 314 ---------------~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~ 378 (531)
+.+.|+.+.|++++. ++++|.+++|||.+|+|+.||.|+..+.+.. +
T Consensus 289 ~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~--------d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~------~---- 350 (691)
T 1dar_A 289 IKGTTPEGEVVEIHPDPNGPLAALAFKIMA--------DPYVGRLTFIRVYSGTLTSGSYVYNTTKGRK------E---- 350 (691)
T ss_dssp EEEECSSSCEEEECCCTTSCCEEEEEEEEE--------ETTTEEEEEEEEEESEEESSCEEEETTTTEE------E----
T ss_pred ccccCCCccccccccCCCCCcEEEEEEEEE--------cCCCCcEEEEEEeeeeEecCCEEEecCCCcE------E----
Confidence 257789999988773 4568999999999999999999996654210 0
Q ss_pred ceeeeEEeee-cccceeEEecCceEEEeeecCccccccccccceeeccCCC
Q 039945 379 IYSRIVSLFA-EQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGS 428 (531)
Q Consensus 379 ~~~~V~si~~-~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~ 428 (531)
...++..++. ...++++|.||+++++. ++ ++...|+.|+.++.
T Consensus 351 ~v~~l~~~~g~~~~~v~~~~aGdI~~i~-----gl--~~~~~Gdtl~~~~~ 394 (691)
T 1dar_A 351 RVARLLRMHANHREEVEELKAGDLGAVV-----GL--KETITGDTLVGEDA 394 (691)
T ss_dssp ECCEEEEECSSCEEEESEEETTCEEEEE-----CC--SSCCTTCEEEETTC
T ss_pred EEceEEEEeCCCceEcceecCCCEEEEe-----Cc--ccCccCCEEecCCC
Confidence 1233444442 34689999999999984 22 24567888876554
No 28
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.96 E-value=3.6e-29 Score=271.49 Aligned_cols=272 Identities=22% Similarity=0.257 Sum_probs=184.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
..+|+++||+|||||||+++|++.... ....+++|++++........... ..+.... ...+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~---~~e~ggiT~~ig~~~~~~~~~~~----~~~~~~~-------~~~v~~--- 67 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA---SREAGGITQHIGATEIPMDVIEG----ICGDFLK-------KFSIRE--- 67 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS---CC----CCCBTTEEEEEHHHHHH----HSCGGGG-------GCGGGG---
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc---cccCCceecccCeEEEeechhhh----hcccccc-------cccccc---
Confidence 468999999999999999999864321 11235777766543321100000 0000000 000000
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH--
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE-- 262 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~-- 262 (531)
....++|||||||++|...+.++++.+|++|+|+|++++ .++|+.+++..+...++| +|+|+||+|+...
T Consensus 68 ------~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G-v~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~ 139 (594)
T 1g7s_A 68 ------TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG-FKPQTQEALNILRMYRTP-FVVAANKIDRIHGWR 139 (594)
T ss_dssp ------TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC-CCHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCC
T ss_pred ------ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-ccHhHHHHHHHHHHcCCe-EEEEecccccccccc
Confidence 013699999999999988888888999999999999998 899999999999888865 8999999999631
Q ss_pred ---------------H----HHHHHHHHHHHHHhccc------------CCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 263 ---------------N----VAINQHEAIMKFIQGTV------------ADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 263 ---------------~----~~~~~~~~i~~~l~~~~------------~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
. .+.+...++.+.+...+ ...++++++||++|.|+++|+++|...+|.+
T Consensus 140 ~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 140 VHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp CCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 1 11122223333332211 1345899999999999999999998765422
Q ss_pred -----CCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEe
Q 039945 312 -----ERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSL 386 (531)
Q Consensus 312 -----~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si 386 (531)
..+.+.|++++|++++.. ++.|++++|+|.+|+|++||.|+++|.. + +..++|++|
T Consensus 220 ~~~~l~~~~~~p~~~~V~~~~~d--------~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~------~-----~~~~rV~~i 280 (594)
T 1g7s_A 220 LREQLKIEEDSPARGTILEVKEE--------TGLGMTIDAVIYDGILRKDDTIAMMTSK------D-----VISTRIRSL 280 (594)
T ss_dssp CSGGGEECTTSBCEEEEEEEEEE--------TTEEEEEEEEEEESEEETTCEEEEEBSS------S-----EEEEECCEE
T ss_pred chhhhccccCCCceeEEEEEEEe--------CCcEEEEEEEEeeCEEeeCCEEEECCCC------C-----ceeEEEeEE
Confidence 224578999999998854 3489999999999999999999999863 1 134688888
Q ss_pred eec------------ccceeEEe--cCceEEEeeecCccccccccccceeeccCC
Q 039945 387 FAE------------QNELQFAV--PGGLIGVGTTMDPTLTRADRLVGQVLGEVG 427 (531)
Q Consensus 387 ~~~------------~~~v~~a~--aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~ 427 (531)
... ..++++|. +|+.+++. ++ .+...|+.|+...
T Consensus 281 ~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~-----~l--~~~~~Gd~l~~~~ 328 (594)
T 1g7s_A 281 LKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAP-----GI--DDVMAGSPLRVVT 328 (594)
T ss_dssp EEECCCC----CCCSEEECSEEESSEEEEEECS-----SC--TTBCTTCEEEECS
T ss_pred EeccccchhhhccCCceEccEEcCCCCcEEEEc-----cc--CCCCCCCEEEecC
Confidence 653 34678888 67666541 21 2345677665443
No 29
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.96 E-value=2.7e-28 Score=269.35 Aligned_cols=254 Identities=21% Similarity=0.217 Sum_probs=190.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCc---------------CccccceecceEeeecceeeeeecccCCCCCCCcccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQT---------------VRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYK 167 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~---------------~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r 167 (531)
....+|+|+||+|+|||||+++|++... +....|+++++|+......
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~------------------ 68 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAP------------------ 68 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEE------------------
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceE------------------
Confidence 4568999999999999999999983211 1122344455554332211
Q ss_pred ccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC
Q 039945 168 AYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL 247 (531)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~ 247 (531)
+......++|||||||.+|...+.++++.+|++++|+|+..+ ...++.+++..+...++
T Consensus 69 --------------------~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g-~~~qt~~~~~~~~~~~i 127 (665)
T 2dy1_A 69 --------------------LLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG-VQVGTERAWTVAERLGL 127 (665)
T ss_dssp --------------------EEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTC-SCHHHHHHHHHHHHTTC
T ss_pred --------------------EeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcc-cchhHHHHHHHHHHccC
Confidence 111126899999999999999999999999999999999988 89999999998888886
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHHHHHHh--------------------------------------------------
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAIMKFIQ-------------------------------------------------- 277 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~-------------------------------------------------- 277 (531)
+ +|+|+||+|+. . ...+..+++.+.+.
T Consensus 128 p-~ilv~NKiD~~-~-~~~~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 204 (665)
T 2dy1_A 128 P-RMVVVTKLDKG-G-DYYALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRF 204 (665)
T ss_dssp C-EEEEEECGGGC-C-CHHHHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHH
T ss_pred C-EEEEecCCchh-h-hHHHHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHH
Confidence 5 78899999987 2 23344444444332
Q ss_pred ---------------------cc----------------cCCCCCEEEecccCccchHHHHHHHHccCCCCCCC-CCCCC
Q 039945 278 ---------------------GT----------------VADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERN-FIDPP 319 (531)
Q Consensus 278 ---------------------~~----------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~~-~~~~~ 319 (531)
+. ....+|++++||++|.|++.|+++|.+.+|.|... .+.|+
T Consensus 205 r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~~~~~p~ 284 (665)
T 2dy1_A 205 RQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERFGDGPP 284 (665)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHHHCSCSC
T ss_pred HHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccccCCCCCe
Confidence 00 01225899999999999999999999999988643 67899
Q ss_pred EEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeee----cccceeE
Q 039945 320 NMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFA----EQNELQF 395 (531)
Q Consensus 320 ~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~----~~~~v~~ 395 (531)
.+.|++++. ++++|++++|||.+|+|++||.|+..+. ..+|.+|.. ...++++
T Consensus 285 ~~~V~k~~~--------d~~~G~~~~~rV~sG~l~~g~~v~~~~~---------------~~~v~~l~~~~g~~~~~v~~ 341 (665)
T 2dy1_A 285 LAKVFKVQV--------DPFMGQVAYLRLYRGRLKPGDSLQSEAG---------------QVRLPHLYVPMGKDLLEVEE 341 (665)
T ss_dssp EEEEEEEEE--------ETTTEEEEEEEEEESEECTTEEEBCTTS---------------CEEESSEEEEETTEEEEESC
T ss_pred EEEEEEEEE--------cCCCCeEEEEEEcccEEecCCEEEcCCC---------------eEEEeEEEEEeCCCeeECCE
Confidence 999988874 4568999999999999999999996551 246666654 3458999
Q ss_pred EecCceEEEeeecCccccccccccceeeccCCC
Q 039945 396 AVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGS 428 (531)
Q Consensus 396 a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~ 428 (531)
|.||++|++. ++ +++.+|+.|+.++.
T Consensus 342 a~aG~iv~i~-----gl--~~~~~Gdtl~~~~~ 367 (665)
T 2dy1_A 342 AEAGFVLGVP-----KA--EGLHRGMVLWQGEK 367 (665)
T ss_dssp EETTCEEEES-----SC--TTCCTTCEEESSSC
T ss_pred ECCCCEEEEe-----CC--ccCccCCEEecCCC
Confidence 9999999984 22 24668988877554
No 30
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=231.14 Aligned_cols=168 Identities=14% Similarity=0.243 Sum_probs=149.9
Q ss_pred CCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeeccccee
Q 039945 315 FIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQ 394 (531)
Q Consensus 315 ~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~ 394 (531)
.++||+|+|+++|+ + .|+|++|+|.+|+|++||.|.++|++ ..++|++|++++++++
T Consensus 3 ~~~p~rl~v~~v~~--g--------~G~v~~G~v~~G~i~~Gd~v~i~P~~-------------~~~~V~~I~~~~~~~~ 59 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--D--------MGTVVLGKLESGSICKGQQLVMMPNK-------------HNVEVLGILSDDVETD 59 (204)
T ss_dssp ----CBEEEEEEEE--S--------SSEEEEEECCBSCEESSCCEEETTTT-------------EEEEEEEECSSSSCBS
T ss_pred CCCCEEEEEEEEEc--C--------CCEEEEEEEecCEEECCCEEEECCCC-------------CEEEEEEEEECCEEeE
Confidence 47899999999985 3 79999999999999999999999985 3689999999999999
Q ss_pred EEecCceEEEeeecCccccccccccceeeccCCCccceeEEEEEEEEEeeeecccccCCCcccccccccCCCCEEEEEee
Q 039945 395 FAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKQEILMLNIG 474 (531)
Q Consensus 395 ~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~~~p~~~~~f~a~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g 474 (531)
+|.|||+|++.|+ +++..++.+|++|++++.+|+.++.|+|++.||++ ..+|..|+++++|+|
T Consensus 60 ~A~aGd~V~l~L~---gi~~~di~rG~vl~~~~~~~~~~~~f~a~v~~l~~--------------~~~i~~g~~~~l~~~ 122 (204)
T 3e1y_E 60 TVAPGENLKIRLK---GIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIEH--------------KSIICPGYNAVLHIH 122 (204)
T ss_dssp EECTTSEEEEEEE---ESSSSCCCTTCEEBCSSSCCCCCSEEEEEEECCSC--------------CSCCCTTEEEEEESS
T ss_pred EECCCCEEEEEEc---CCCHHHCccceEEECCCCCCchhEEEEEEEEEeCC--------------CCccCCCceEEEEEe
Confidence 9999999999998 88888999999999999988889999999999986 247999999999999
Q ss_pred ceeeeEEEEEecC--------------c--------eEEEEeCCeeecccC------CEEEEEeccCCCceEEEEEEEee
Q 039945 475 SMSTGARVLAVKN--------------D--------LAKLQLTSPVCTSRG------EKIALSRRVEKHWRLIGWGQIQA 526 (531)
Q Consensus 475 ~~~~~~~v~~i~~--------------~--------~v~~~l~~p~~~~~g------~r~ilr~~~~~~~~tig~G~I~~ 526 (531)
+.++.|+|..+.. . .|+|++.+|+|+++| .||+||| .++|+|+|.|++
T Consensus 123 t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd----~~~Tva~G~V~~ 198 (204)
T 3e1y_E 123 TCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRD----EGKTIAIGKVLK 198 (204)
T ss_dssp SCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEEEEEEESSCCCCCCTTSSGGGTEEEEEC----SSSCCEEEEEEE
T ss_pred CCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEEEEEEECCeEEEEEcccCcCCCCEEEEE----CCcEEEEEEEEE
Confidence 9999999998742 0 688999999999998 5999997 679999999986
No 31
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.96 E-value=5.3e-28 Score=268.00 Aligned_cols=256 Identities=20% Similarity=0.255 Sum_probs=183.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH---CCC------------cCccccceecceEeeecceeeeeecccCCCCCCCcccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS---GVQ------------TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYK 167 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~---g~~------------~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r 167 (531)
...++|+|+|++|+|||||+|+|+ +.. .+.+..|+++++|+......+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~----------------- 70 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA----------------- 70 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEE-----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEE-----------------
Confidence 446899999999999999999998 321 122345566777765543211
Q ss_pred ccCCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC
Q 039945 168 AYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL 247 (531)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~ 247 (531)
.+. ...++|||||||.+|...+.+.+..+|++|+|+|++.+ ...++...+..+...+.
T Consensus 71 ------------~~~---------~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g-~~~~~~~~~~~~~~~~~ 128 (693)
T 2xex_A 71 ------------AWE---------GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG-VEPQTETVWRQATTYGV 128 (693)
T ss_dssp ------------EET---------TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTB-SCHHHHHHHHHHHHTTC
T ss_pred ------------EEC---------CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCC-CcHHHHHHHHHHHHcCC
Confidence 111 27899999999999999999999999999999999988 78889888888887775
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHHHHHHhcc------------------------------------------------
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAIMKFIQGT------------------------------------------------ 279 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~------------------------------------------------ 279 (531)
|+|+|+||+|+...+ .....+++++.+...
T Consensus 129 -p~ilviNK~Dl~~~~-~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (693)
T 2xex_A 129 -PRIVFVNKMDKLGAN-FEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDR 206 (693)
T ss_dssp -CEEEEEECTTSTTCC-HHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHH
T ss_pred -CEEEEEECCCccccc-hHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHH
Confidence 489999999997542 233344444433210
Q ss_pred -------------------------------------------cCCCCCEEEecccCccchHHHHHHHHccCCCCCC---
Q 039945 280 -------------------------------------------VADGAPVVPISAQLKYNIDVVCEYIVKKIPIPER--- 313 (531)
Q Consensus 280 -------------------------------------------~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~~--- 313 (531)
....+|+++.||++|.|++.|+++|.+++|.|..
T Consensus 207 ~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~ 286 (693)
T 2xex_A 207 AEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKP 286 (693)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCC
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhccc
Confidence 0112579999999999999999999999998854
Q ss_pred -----------------CCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceee
Q 039945 314 -----------------NFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376 (531)
Q Consensus 314 -----------------~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~ 376 (531)
+.+.||.+.|++++. |+++|.+++|||.+|+|+.||+|.....+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~--------d~~~g~~~~~RV~sG~l~~g~~v~~~~~~----------- 347 (693)
T 2xex_A 287 IIGHRASNPEEEVIAKADDSAEFAALAFKVMT--------DPYVGKLTFFRVYSGTMTSGSYVKNSTKG----------- 347 (693)
T ss_dssp EEEEETTEEEEEEEECSCTTSCCEEEEEEEEE--------ETTTEEEEEEEEEESEEETTEEEEETTTT-----------
T ss_pred ccccCCCccccceeecCCCCCceEEEEEEeee--------cCCCceEEEEEEEeeeEecCCEEEecCCC-----------
Confidence 257789999988773 55689999999999999999999965321
Q ss_pred ccceeeeEEeeec----ccceeEEecCceEEEeeecCccccccccccceeeccCC
Q 039945 377 TPIYSRIVSLFAE----QNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVG 427 (531)
Q Consensus 377 ~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~~~~ 427 (531)
...+|..|... ..++++|.|||++++. ++ ++...|+.|+.++
T Consensus 348 --~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-----gl--~~~~~GdTl~~~~ 393 (693)
T 2xex_A 348 --KRERVGRLLQMHANSRQEIDTVYSGDIAAAV-----GL--KDTGTGDTLCGEK 393 (693)
T ss_dssp --EEEEECCEEEECSSCEEECSEEETTCEEEEE-----SC--SSCCTTCEEEETT
T ss_pred --ceEEeceEEEEeCCCceEccccCcCCEEEEe-----Cc--ccCccCCEEecCC
Confidence 13456555443 4579999999999984 22 2455687777644
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.93 E-value=2.3e-25 Score=251.58 Aligned_cols=267 Identities=22% Similarity=0.231 Sum_probs=173.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC-------------CcCccccceecceEeeecceeeeeecccCCCCCCCcccccc
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV-------------QTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAY 169 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~ 169 (531)
...+||+|+||+|||||||+++|++. ..+.+..|+++|+|+......+.. ...+ ...
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~-~~~~---------~~~ 86 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYS-EMSD---------EDV 86 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEE-ECCH---------HHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEe-cccc---------ccc
Confidence 34589999999999999999999842 223446778889988765433211 0000 000
Q ss_pred CCCCCCCCCCCCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce
Q 039945 170 GSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH 249 (531)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~ 249 (531)
. .... ... .....++|||||||.+|...+.++++.+|++|+|+|++++ ...|+...+..+...+++
T Consensus 87 ~---~i~~--~~~-------~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g-~~~qt~~~~~~~~~~~~p- 152 (842)
T 1n0u_A 87 K---EIKQ--KTD-------GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG-VCVQTETVLRQALGERIK- 152 (842)
T ss_dssp H---HCSS--CCC-------SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB-SCHHHHHHHHHHHHTTCE-
T ss_pred c---cccc--ccc-------CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHHcCCC-
Confidence 0 0000 000 0126899999999999999999999999999999999998 788998888777777754
Q ss_pred EEEEEeccCCcc------H----HHHHHHHHHHHHHHhcc----------cCCCCCEEEecccCccc-------------
Q 039945 250 IIILQNKVDLIQ------E----NVAINQHEAIMKFIQGT----------VADGAPVVPISAQLKYN------------- 296 (531)
Q Consensus 250 iIvviNK~Dl~~------~----~~~~~~~~~i~~~l~~~----------~~~~~~ii~iSa~~g~g------------- 296 (531)
+|+|+||+|+.. . ..+....++++..+..+ .....++...|+++|++
T Consensus 153 ~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~ 232 (842)
T 1n0u_A 153 PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKK 232 (842)
T ss_dssp EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTT
T ss_pred eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchh
Confidence 789999999873 1 22344555555554311 01122567777755422
Q ss_pred --------------------------------------------------------------------------------
Q 039945 297 -------------------------------------------------------------------------------- 296 (531)
Q Consensus 297 -------------------------------------------------------------------------------- 296 (531)
T Consensus 233 ~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~ 312 (842)
T 1n0u_A 233 FGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEK 312 (842)
T ss_dssp TTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGG
T ss_pred cCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHH
Confidence
Q ss_pred ------------------hHHHHHHHHccCCCCC-------------------------CCCCCCCEEEEEEeeeecCCC
Q 039945 297 ------------------IDVVCEYIVKKIPIPE-------------------------RNFIDPPNMIVIRSFDVNKPG 333 (531)
Q Consensus 297 ------------------i~~L~~~L~~~l~~~~-------------------------~~~~~~~~~~i~~~~~v~~~~ 333 (531)
++.|+++|.+++|+|. .+.+.|+.+.|++.+
T Consensus 313 ~~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~------ 386 (842)
T 1n0u_A 313 DLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMV------ 386 (842)
T ss_dssp GCCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEE------
T ss_pred hhhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeee------
Confidence 1567777778888874 245789999997765
Q ss_pred CcccCCCce-EEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeec----ccceeEEecCceEEEe
Q 039945 334 FEVDDIRGG-VAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAE----QNELQFAVPGGLIGVG 405 (531)
Q Consensus 334 ~~~~~~~G~-v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~----~~~v~~a~aG~~v~i~ 405 (531)
.++++|. +.++||.+|+|+.||.|.+...++..+....+ ...+|..|... ..++++|.|||+|++.
T Consensus 387 --~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~----~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~ 457 (842)
T 1n0u_A 387 --PTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDL----FIKAIQRVVLMMGRFVEPIDDCPAGNIIGLV 457 (842)
T ss_dssp --EBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTE----EEEECCEEEEEETTEEEEESEEETTCEEEEE
T ss_pred --ecCCCCceEEEEEEEeeeecCCCEEEeccccccCCCCccc----ceEEeeeeEeeccCcccccceeCCCCEEEEE
Confidence 3556895 99999999999999999876443222111100 12456666543 3579999999999983
No 33
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.84 E-value=2.5e-22 Score=212.69 Aligned_cols=231 Identities=18% Similarity=0.125 Sum_probs=125.0
Q ss_pred cccCCCccCCcccccceeeEEeeeecccccccccc-cccCCCCccccccchhhhccccccccccccccccccccccCCCC
Q 039945 18 HTPSHNQYSGKPQSNLGLAVVLRSQLAQRSICFTG-LNITSGNTDNKERGIFKETGKMSRKGLMEQDLSKLDVTKLHPLS 96 (531)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (531)
++.|.+|++|.....+.. |+++.......++. ++|++++.++..+..+..........+... +...
T Consensus 158 ~~~a~~~l~G~ls~~i~~---lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~----~~~~------ 224 (476)
T 3gee_A 158 YRTAVSQMKGDLSVRLGG---LREQLIRSCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRL----IDSY------ 224 (476)
T ss_dssp HHHHHHHHHTHHHHHHHH---HHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHH----HHHH------
T ss_pred HHHHHHhhCCcHHHHHHH---HHHHHHHHHHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHH----HHHH------
Confidence 334555666666665555 55555555555555 566665444333333333211001111100 0000
Q ss_pred hhhhccCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCC
Q 039945 97 PEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDN 176 (531)
Q Consensus 97 ~~~~~~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 176 (531)
......++.++|+++|++|+|||||+|+|++.. +.+ +++.|++|+++. .
T Consensus 225 ~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~---------~a~-----------------vs~~~gtT~d~~-----~ 273 (476)
T 3gee_A 225 QHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQE---------RAI-----------------VSHMPGTTRDYI-----E 273 (476)
T ss_dssp HHHHHHHHCEEEEEECCTTSSHHHHHHHCC-------------------------------------------------C
T ss_pred HhhHhhcCCCEEEEECCCCCCHHHHHHHHhCCC---------Ccc-----------------cCCCCCceEEEE-----E
Confidence 000111345889999999999999999998752 111 223466666642 2
Q ss_pred CCCCCCCCccccccceeeEEEEecCChhhHH--------HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 177 PLCDVPGFENCRMKLLRHVSFVDCPGHDILM--------ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 177 ~~~~~~g~~~~~~~~~~~i~liDtPG~~~~~--------~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
..+.+.| ..+.||||||++++. ..+...+..+|++|+|+|++.+....+..+...++..+...
T Consensus 274 ~~i~~~g---------~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~ 344 (476)
T 3gee_A 274 ECFIHDK---------TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAA 344 (476)
T ss_dssp EEEEETT---------EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTS
T ss_pred EEEEECC---------eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCC
Confidence 2233333 789999999987653 23345678999999999999873222222444555655567
Q ss_pred eEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 249 HIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
|+|+|+||+|+........ +++.+. ...+++++||++|+|+++|+++|.+.++
T Consensus 345 piIvV~NK~Dl~~~~~~~~--~~l~~~------~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 345 KFLTVANKLDRAANADALI--RAIADG------TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEEEEEECTTSCTTTHHHH--HHHHHH------HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CEEEEEECcCCCCccchhH--HHHHhc------CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 8999999999986544321 223322 1268999999999999999999988775
No 34
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.83 E-value=3.3e-20 Score=176.97 Aligned_cols=168 Identities=18% Similarity=0.152 Sum_probs=114.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCC-CC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCD-VP 182 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~ 182 (531)
..++|+++|++|+|||||+|+|++..... . ..+.+++++.... ..+. +.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~-~------------------------~~~~~~~t~~~~~-----~~~~~~~ 77 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLA-F------------------------ASKTPGRTQHINY-----FSVGPAA 77 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSS-C------------------------TTCCCCSCCCEEE-----EEESCTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcce-e------------------------ecCCCCcccceEE-----EEecCCC
Confidence 45899999999999999999999863100 0 1111222222100 0000 11
Q ss_pred CCccccccceeeEEEEecCCh----------h---hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce
Q 039945 183 GFENCRMKLLRHVSFVDCPGH----------D---ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH 249 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~----------~---~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~ 249 (531)
...+.||||||+ + .+....+.....+|++++|+|++.+ .......++..+...+ .|
T Consensus 78 ---------~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~l~~~~-~p 146 (223)
T 4dhe_A 78 ---------EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRP-LTELDRRMIEWFAPTG-KP 146 (223)
T ss_dssp ---------SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHGGGC-CC
T ss_pred ---------CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCC-CCHHHHHHHHHHHhcC-CC
Confidence 168999999995 2 2344555556668999999999886 5666666667776666 45
Q ss_pred EEEEEeccCCccHHHHHHHHHHHHHHHhcc----cCCCCCEEEecccCccchHHHHHHHHccCCCCC
Q 039945 250 IIILQNKVDLIQENVAINQHEAIMKFIQGT----VADGAPVVPISAQLKYNIDVVCEYIVKKIPIPE 312 (531)
Q Consensus 250 iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~----~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~ 312 (531)
+++|+||+|+.+........+++.+.+..+ .....+++++||++|.|+++|+++|.+.++.+.
T Consensus 147 ~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 147 IHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp EEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred EEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 999999999998766655556665555432 124578999999999999999999998887653
No 35
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.83 E-value=5.4e-20 Score=184.96 Aligned_cols=161 Identities=22% Similarity=0.288 Sum_probs=116.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+.-.|+++|++|+|||||+|+|+|.... + +++.|++|+....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~---------i-----------------~s~~~~tT~~~~~------------ 50 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVS---------I-----------------ISPKAGTTRMRVL------------ 50 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS---------C-----------------CCSSSCCCCSCEE------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcc---------c-----------------cCCCCCceeeEEE------------
Confidence 4467999999999999999999986421 1 1233444544210
Q ss_pred Cccccccc-eeeEEEEecCChh----------hHHHHHHHhccccCceEEEEeCCCCCCCcchHHH-HHHHHHcCCceEE
Q 039945 184 FENCRMKL-LRHVSFVDCPGHD----------ILMATMLNGAAIMDGALLLIAANESCPQPQTSEH-LAAVEIMRLQHII 251 (531)
Q Consensus 184 ~~~~~~~~-~~~i~liDtPG~~----------~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~-l~~~~~~~~~~iI 251 (531)
+..... ...+.||||||+. .+...+...+..+|++|+|+|++.+ ...++... +..+...+ .|++
T Consensus 51 --~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~-~~~~~~~~~~~~l~~~~-~pvi 126 (308)
T 3iev_A 51 --GVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEG-WRPRDEEIYQNFIKPLN-KPVI 126 (308)
T ss_dssp --EEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTB-SCHHHHHHHHHHTGGGC-CCEE
T ss_pred --EEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCC-CCchhHHHHHHHHHhcC-CCEE
Confidence 111111 3789999999973 3456667788999999999999987 56666665 56666555 4699
Q ss_pred EEEeccCCc-cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 252 ILQNKVDLI-QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 252 vviNK~Dl~-~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+|+||+|+. +........+++.+.+ ....+++++||++|.|+++|+++|.+.++.
T Consensus 127 lV~NK~Dl~~~~~~~~~~~~~l~~~~----~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 127 VVINKIDKIGPAKNVLPLIDEIHKKH----PELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EEEECGGGSSSGGGGHHHHHHHHHHC----TTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEECccCCCCHHHHHHHHHHHHHhc----cCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 999999998 5555555555555543 245789999999999999999999988864
No 36
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=5.6e-20 Score=184.01 Aligned_cols=156 Identities=19% Similarity=0.244 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|++|+|||||+|+|+|.... + +++.|+||++... ..+.+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~---------i-----------------vs~~~~tTr~~i~-----~i~~~---- 52 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVA---------P-----------------ISPRPQTTRKRLR-----GILTE---- 52 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCS---------C-----------------CCSSSCCCCSCEE-----EEEEE----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee---------e-----------------ecCCCCceeEEEE-----EEEEe----
Confidence 57999999999999999999986321 1 1234555554211 01111
Q ss_pred cccccceeeEEEEecCChhh--------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEe
Q 039945 186 NCRMKLLRHVSFVDCPGHDI--------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQN 255 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~--------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviN 255 (531)
...++.||||||+.+ |...+...+..+|++|+|+|++.+ ....+...+..+... + .|+|+|+|
T Consensus 53 -----~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~-~~~~~~~i~~~l~~~~~~-~p~ilV~N 125 (301)
T 1wf3_A 53 -----GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHP-PTPEDELVARALKPLVGK-VPILLVGN 125 (301)
T ss_dssp -----TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSC-CCHHHHHHHHHHGGGTTT-SCEEEEEE
T ss_pred -----CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCC-CChHHHHHHHHHHhhcCC-CCEEEEEE
Confidence 126899999999765 566777888999999999999887 555555555556554 4 56999999
Q ss_pred ccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 256 KVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 256 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
|+|+.+.... ..+.+.++ ....+++++||++|.|+++|++.|.+.++.
T Consensus 126 K~Dl~~~~~~--~~~~~~~~-----~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 126 KLDAAKYPEE--AMKAYHEL-----LPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp CGGGCSSHHH--HHHHHHHT-----STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred CcccCCchHH--HHHHHHHh-----cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 9999865430 12222222 234579999999999999999999987764
No 37
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.81 E-value=4.8e-19 Score=164.60 Aligned_cols=159 Identities=15% Similarity=0.171 Sum_probs=112.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|.+|+|||||+|+|++..... ..+.+++++..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------------------~~~~~~~t~~~-------------- 61 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAF--------------------------VSKTPGKTRSI-------------- 61 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSC--------------------------CCSSCCCCCCE--------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCcccc--------------------------ccCCCCCccCe--------------
Confidence 44799999999999999999999763110 01112222211
Q ss_pred CccccccceeeEEEEecCC----------hhhH---HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceE
Q 039945 184 FENCRMKLLRHVSFVDCPG----------HDIL---MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHI 250 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG----------~~~~---~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~i 250 (531)
........+.+||||| ...| .....+....+|++++|+|++.+ ........+..+...+ .|+
T Consensus 62 ---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~~-~p~ 136 (195)
T 3pqc_A 62 ---NFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIP-PQDSDLMMVEWMKSLN-IPF 136 (195)
T ss_dssp ---EEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHHHTT-CCE
T ss_pred ---EEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCC-CCHHHHHHHHHHHHcC-CCE
Confidence 0001114688999999 3333 34455556677999999999876 4555556666777776 459
Q ss_pred EEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 251 IILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 251 IvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
++|+||+|+.+........+++.+++.. ....+++++||++|.|+++|+++|.+.++
T Consensus 137 i~v~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 137 TIVLTKMDKVKMSERAKKLEEHRKVFSK--YGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp EEEEECGGGSCGGGHHHHHHHHHHHHHS--SCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEEEEChhcCChHHHHHHHHHHHHHHhh--cCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 9999999998766666666777776653 24579999999999999999999987664
No 38
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=6e-20 Score=193.52 Aligned_cols=161 Identities=20% Similarity=0.187 Sum_probs=110.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+|+|++... .++ .+.|++|++.. ...+.+.|
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~---------~~~-----------------~~~~gtT~d~~-----~~~~~~~~ 222 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEER---------VIV-----------------SNVAGTTRDAV-----DTSFTYNQ 222 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT---------EEE-----------------C---------C-----CEEEEETT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCc---------eee-----------------cCCCCceeeee-----EEEEEECC
Confidence 458999999999999999999998631 111 12345555431 11222332
Q ss_pred CccccccceeeEEEEecCCh----------hhHHH-HHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEE
Q 039945 184 FENCRMKLLRHVSFVDCPGH----------DILMA-TMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIII 252 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~----------~~~~~-~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIv 252 (531)
..+.||||||+ +.|.. .+...+..+|++|+|+|++++ ...++..++..+...+ +++|+
T Consensus 223 ---------~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~-~s~~~~~~~~~~~~~~-~~iii 291 (436)
T 2hjg_A 223 ---------QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG-IIEQDKRIAGYAHEAG-KAVVI 291 (436)
T ss_dssp ---------EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC-CCHHHHHHHHHHHHTT-CEEEE
T ss_pred ---------eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcC-CcHHHHHHHHHHHHcC-CcEEE
Confidence 67999999998 44432 244677889999999999998 6777777777776666 56999
Q ss_pred EEeccCCccHHH--HHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 253 LQNKVDLIQENV--AINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 253 viNK~Dl~~~~~--~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
|+||+|+.+... .++..+++.+.+.. ....+++++||++|.|+++|++.+.+.+
T Consensus 292 v~NK~Dl~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 292 VVNKWDAVDKDESTMKEFEENIRDHFQF--LDYAPILFMSALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp EEECGGGSCCCTTHHHHHHHHHHHHCGG--GTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred EEECccCCCcchHHHHHHHHHHHHhccc--CCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence 999999976432 33444555554432 2467999999999999999988776433
No 39
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.81 E-value=3.9e-19 Score=165.64 Aligned_cols=160 Identities=14% Similarity=0.190 Sum_probs=107.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC-cCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ-TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~-~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
...++|+++|.+|+|||||+|+|++.. ... ..+.+++++...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------------------~~~~~~~t~~~~----------- 63 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLAR--------------------------TSSKPGKTQTLN----------- 63 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------------------CCEE-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccc--------------------------cCCCCCceeeEE-----------
Confidence 345899999999999999999999753 100 001122222110
Q ss_pred CCCccccccceeeEEEEecCC----------hhhHHHHHH---HhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 182 PGFENCRMKLLRHVSFVDCPG----------HDILMATML---NGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG----------~~~~~~~~~---~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
.......+.|||||| ++.|..... .....+|++++|+|++.+ ......+.+..+...+ .
T Consensus 64 ------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~-~ 135 (195)
T 1svi_A 64 ------FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHA-PSNDDVQMYEFLKYYG-I 135 (195)
T ss_dssp ------EEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHHHTT-C
T ss_pred ------EEEECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCC-CCHHHHHHHHHHHHcC-C
Confidence 000014699999999 555544333 334455999999999876 4555555556666655 4
Q ss_pred eEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 249 HIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
|+++|+||+|+.+........+++.+.+.. ....+++++||++|+|+++|+++|.+.++
T Consensus 136 p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 136 PVIVIATKADKIPKGKWDKHAKVVRQTLNI--DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CEEEEEECGGGSCGGGHHHHHHHHHHHHTC--CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CEEEEEECcccCChHHHHHHHHHHHHHHcc--cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 699999999998766555556666665542 23578999999999999999999986553
No 40
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=2.1e-19 Score=166.66 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=102.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
++.++|+++|.+|+|||||+++|++.... ...-|+... ...+.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~------~~~~t~~~~-----------------------------~~~~~~~ 58 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV------HTSPTIGSN-----------------------------VEEIVIN 58 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE------EEECCSCSS-----------------------------CEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC------cCcCCCccc-----------------------------eEEEEEC
Confidence 45689999999999999999999964321 000011000 0011111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH---cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI---MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~---~~~~~iIvviNK~Dl 259 (531)
...+.||||||+++|.......+..+|++++|+|++...........+..+.. ....|+++|+||+|+
T Consensus 59 ---------~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 59 ---------NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp ---------TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred ---------CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 26899999999988776667778899999999999875212222333333322 134679999999999
Q ss_pred ccHHHHHHHHHHHHHHHhc--ccCCCCCEEEecccCccchHHHHHHHHccCCCCC
Q 039945 260 IQENVAINQHEAIMKFIQG--TVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPE 312 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~--~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~~ 312 (531)
.+..... ++.+.+.. ......+++++||++|.|+++|+++|.+.++.+.
T Consensus 130 ~~~~~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 130 KECMTVA----EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp TTCCCHH----HHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred cCCCCHH----HHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence 7532222 22222221 1123468999999999999999999998776543
No 41
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.79 E-value=2.4e-19 Score=163.04 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=103.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
++.++|+++|++|+|||||+++|++..... ..-|+..... .+.+.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~-----------------------------~~~~~ 49 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT------TIPTIGFNVE-----------------------------TVTYK 49 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC------CCCCSSEEEE-----------------------------EEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC------cCCcCccceE-----------------------------EEEEC
Confidence 345899999999999999999998643210 0011111000 00111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHH--cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEI--MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~--~~~~~iIvviNK~Dl 259 (531)
...+.||||||+++|...+...+..+|++++|+|++...........+. ++.. ....|+++|+||+|+
T Consensus 50 ---------~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 120 (171)
T 1upt_A 50 ---------NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120 (171)
T ss_dssp ---------TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred ---------CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCC
Confidence 2689999999999887777778899999999999987521122222232 2221 134679999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.....+..+.+.. ........+++++||++|.|+++|+++|.+.++
T Consensus 121 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 121 EQAMTSSEMANSLGL--PALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp TTCCCHHHHHHHHTG--GGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCc--hhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 864222222222211 111123458999999999999999999987653
No 42
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.79 E-value=2.8e-19 Score=166.14 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=104.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
++.++|+++|.+|+|||||+++|++.... .+ ..-|+...+.. +.+.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~--~~~t~~~~~~~-----------------------------~~~~ 65 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN---ED--MIPTVGFNMRK-----------------------------ITKG 65 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC---CS--CCCCCSEEEEE-----------------------------EEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC---Cc--cCCCCceeEEE-----------------------------EEeC
Confidence 45689999999999999999999864321 00 00111111100 0011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHH--cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEI--MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~--~~~~~iIvviNK~Dl 259 (531)
...+.||||||+++|...+...+..+|++|+|+|++.........+.+. ++.. ....|+++|+||+|+
T Consensus 66 ---------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 136 (188)
T 1zd9_A 66 ---------NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136 (188)
T ss_dssp ---------TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred ---------CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCC
Confidence 2689999999999988777788899999999999986411112222332 2221 133579999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.....+..+.+... .......+++++||++|.|+++|+++|.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 137 PGALDEKELIEKMNLS--AIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp TTCCCHHHHHHHTTGG--GCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred ccCCCHHHHHHHhChh--hhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7542222222221110 11123467999999999999999999997765
No 43
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.78 E-value=1.2e-19 Score=166.33 Aligned_cols=162 Identities=24% Similarity=0.355 Sum_probs=107.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .... ++.+.++. ...+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~------------------------~~~~~~~~-----~~~~~~~ 53 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT---EQEA------------------------GGITQHIG-----AYQVTVN 53 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS---CSSC------------------------CSSSTTCC-----CCEEEET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc---cCCC------------------------CceeEeee-----EEEEEeC
Confidence 34589999999999999999999975321 1101 11111110 0111222
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~ 262 (531)
+ ..+.||||||+++|.......+..+|++++|+|++.+ ...+..+.+..+...+ .|+++|+||+|+.+.
T Consensus 54 ~---------~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~l~~~~~~~-~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 54 D---------KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDG-VMPQTVEAINHAKAAN-VPIIVAINKMDKPEA 122 (178)
T ss_dssp T---------EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCC-CCHHHHHHHHHHGGGS-CCEEEEEETTTSSCS
T ss_pred C---------ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCC-CcHHHHHHHHHHHhCC-CCEEEEEECccCCcC
Confidence 2 6789999999988776666777899999999999876 5666666666665555 459999999999863
Q ss_pred HHHHHHHHHHHHH--HhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 263 NVAINQHEAIMKF--IQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 263 ~~~~~~~~~i~~~--l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.. .+..+.+.+. +........+++++||++|.|+++|+++|.+.+
T Consensus 123 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 123 NP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp CH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 21 1111111110 000000125899999999999999999988654
No 44
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.78 E-value=5.8e-19 Score=162.18 Aligned_cols=164 Identities=16% Similarity=0.155 Sum_probs=106.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+....++.+..... +.+.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~-----------------------------~~~~ 57 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFV---EFQESTIGAAFFSQT-----------------------------LAVN 57 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCT---TTSCCCSCCSEEEEE-----------------------------EEET
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCC---CcCCCCceeEEEEEE-----------------------------EEEC
Confidence 44589999999999999999999865321 111111111110000 0000
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvviNK~Dl~ 260 (531)
.....+.||||||+++|.......+..+|++|+|+|++..........++..+.... ..|+++|+||+|+.
T Consensus 58 -------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 58 -------DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp -------TEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred -------CEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 012589999999999888777778899999999999976421122233444444332 35799999999996
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+.... ..+++.++.+. ...+++++||++|.|+++|+++|.+.++.
T Consensus 131 ~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 131 DARKV--TAEDAQTYAQE---NGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp TTCCS--CHHHHHHHHHH---TTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred ccccC--CHHHHHHHHHH---cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 53211 11233333332 24689999999999999999999987754
No 45
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.78 E-value=9.2e-19 Score=162.97 Aligned_cols=164 Identities=18% Similarity=0.143 Sum_probs=107.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccc-----eecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNE-----LERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNP 177 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e-----~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 177 (531)
...++|+++|++|+|||||++.|.+.....+... .+..-|+...+.. .
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~---------------------------~ 64 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLP---------------------------L 64 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECC---------------------------S
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecc---------------------------c
Confidence 4458999999999999999998887643211100 0011122211100 0
Q ss_pred CC-CCCCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH----HHHHHc----CCc
Q 039945 178 LC-DVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL----AAVEIM----RLQ 248 (531)
Q Consensus 178 ~~-~~~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l----~~~~~~----~~~ 248 (531)
.+ .+. .....+.||||||+++|.......+..+|++|+|+|++.+ ...+..+.+ .++... ...
T Consensus 65 ~~~~~~-------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~-~~~~~~~s~~~l~~~l~~~~~~~~~~ 136 (198)
T 3t1o_A 65 DIGEVK-------GFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPN-RLRANAESMRNMRENLAEYGLTLDDV 136 (198)
T ss_dssp SCCCSS-------SCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGG-GHHHHHHHHHHHHHHHHHTTCCTTSS
T ss_pred cccccc-------CCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcc-hhhHhHHHHHHHHHHHHhhccccCCC
Confidence 00 111 1126899999999999888888889999999999999854 333333333 233332 346
Q ss_pred eEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCC-CEEEecccCccchHHHHHHHHccC
Q 039945 249 HIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGA-PVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~-~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
|+++|+||+|+.+.. ..+++.++++. ... +++++||++|.|+++++++|.+.+
T Consensus 137 piilv~NK~Dl~~~~----~~~~~~~~~~~---~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 137 PIVIQVNKRDLPDAL----PVEMVRAVVDP---EGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp CEEEEEECTTSTTCC----CHHHHHHHHCT---TCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred CEEEEEEchhccccc----CHHHHHHHHHh---cCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 799999999997642 22344455543 244 899999999999999999987654
No 46
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.78 E-value=6.4e-19 Score=176.46 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|++|+|||||+|+|+|... .+ +++.|++|++.. .
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~---------~i-----------------~s~~~~tTr~~~-----~--------- 48 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKI---------SI-----------------TSRKAQTTRHRI-----V--------- 48 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSE---------EE-----------------CCCCSSCCSSCE-----E---------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc---------cc-----------------cCCCCCcceeeE-----E---------
Confidence 5799999999999999999998631 01 123345554311 0
Q ss_pred cccccceeeEEEEecCChh-hHH--------HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEec
Q 039945 186 NCRMKLLRHVSFVDCPGHD-ILM--------ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK 256 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~-~~~--------~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK 256 (531)
+........+.|+||||+. ... ..+..++..+|++++|+|++. ...++...+..+...+ .|+|+++||
T Consensus 49 gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~~~-~P~ilvlNK 125 (301)
T 1ega_A 49 GIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR--WTPDDEMVLNKLREGK-APVILAVNK 125 (301)
T ss_dssp EEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC--CCHHHHHHHHHHHSSS-SCEEEEEES
T ss_pred EEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHhcC-CCEEEEEEC
Confidence 1111122689999999986 322 222456688999999999976 5666666666665545 568999999
Q ss_pred cCCcc-HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 257 VDLIQ-ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 257 ~Dl~~-~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+|+.. .....+..+++ .+. ....+++++||++|.|+++|++.|.+.+|.
T Consensus 126 ~D~~~~~~~~~~~l~~l---~~~--~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 126 VDNVQEKADLLPHLQFL---ASQ--MNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTCCCHHHHHHHHHHH---HTT--SCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred cccCccHHHHHHHHHHH---HHh--cCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 99987 43333333333 221 122369999999999999999999987764
No 47
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.78 E-value=6.3e-21 Score=201.21 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=101.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
++.++|+++|++|+|||||+|+|++.. +.+ +++.|++|+++. ...+.+.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~---------~a~-----------------v~~~~gtT~d~~-----~~~i~~~ 270 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSD---------RAI-----------------VTDLPGTTRDVV-----ESQLVVG 270 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHH---------BSC-----------------CSCCTTCCHHHH-----HHEEEET
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCC---------ccc-----------------ccCCCCeeEEEE-----EEEEEEC
Confidence 455899999999999999999999742 111 233466666642 1122333
Q ss_pred CCccccccceeeEEEEecCChhhHH--------HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEE
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILM--------ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQ 254 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~--------~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvvi 254 (531)
| ..+.||||||++++. ..+...+..+|++|+|+|++.+ ...+..+.+.. +..+|+|+|+
T Consensus 271 g---------~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~-~~~~~~~i~~~---l~~~piivV~ 337 (462)
T 3geh_A 271 G---------IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATG-WTTGDQEIYEQ---VKHRPLILVM 337 (462)
T ss_dssp T---------EEEEECC--------------------CCCCSCSEEEEEEETTTC-SCHHHHHHHHH---HTTSCEEEEE
T ss_pred C---------EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCC-CCHHHHHHHHh---ccCCcEEEEE
Confidence 3 789999999986643 2344567889999999999876 44444444333 3446899999
Q ss_pred eccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 255 NKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 255 NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
||+|+....... .++.+ ....+++++||++|+|+++|+++|.+.+...
T Consensus 338 NK~Dl~~~~~~~--------~~~~~-~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 338 NKIDLVEKQLIT--------SLEYP-ENITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp ECTTSSCGGGST--------TCCCC-TTCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred ECCCCCcchhhH--------HHHHh-ccCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 999998653321 11111 1356899999999999999999999876543
No 48
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.78 E-value=6.1e-19 Score=159.29 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|++|+|||||+++|++..... ..-|+.... ..+.+.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~-----------------------------~~~~~~--- 42 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNV-----------------------------ETVEYK--- 42 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC------CCCCSSCCE-----------------------------EEEECS---
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc------ccCcCceeE-----------------------------EEEEEC---
Confidence 479999999999999999998532110 000111000 001111
Q ss_pred cccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH---cCCceEEEEEeccCCccH
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI---MRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~---~~~~~iIvviNK~Dl~~~ 262 (531)
...+.||||||+++|...+...+..+|++++|+|++...........+..+.. ....|+++|+||+|+.+.
T Consensus 43 ------~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 43 ------NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp ------SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ------CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 26899999999999988888888999999999999864111112222222211 124679999999999764
Q ss_pred HHHHHHHHHHHHHHh--cccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 263 NVAINQHEAIMKFIQ--GTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~--~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
....+ +.+.+. .......+++++||++|.|+++|+++|.+.+.
T Consensus 117 ~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 117 MNAAE----ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp CCHHH----HHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CCHHH----HHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 22222 222221 11123457999999999999999999987664
No 49
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.78 E-value=6.6e-19 Score=162.92 Aligned_cols=159 Identities=15% Similarity=0.156 Sum_probs=104.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
++.++|+++|++|+|||||+++|++..... ..-|+..... .+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~-----------------------------~~~~~ 60 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDT------ISPTLGFNIK-----------------------------TLEHR 60 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSS------CCCCSSEEEE-----------------------------EEEET
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCc------ccccCccceE-----------------------------EEEEC
Confidence 455899999999999999999999753110 0001110000 00111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HH--cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EI--MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~--~~~~~iIvviNK~Dl 259 (531)
...+.||||||+++|...+...+..+|++++|+|++.........+++..+ .. ....|+++|+||+|+
T Consensus 61 ---------~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (186)
T 1ksh_A 61 ---------GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131 (186)
T ss_dssp ---------TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred ---------CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence 268999999999998877777889999999999998652111222233222 21 133679999999999
Q ss_pred ccHHHHHHHHHHHHHHHh--cccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQ--GTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~--~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.... +++.+.+. .......+++++||++|.|+++|+++|.+.++
T Consensus 132 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 132 PGALSC----NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp TTCCCH----HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCH----HHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 764322 22333222 11123568999999999999999999987654
No 50
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.78 E-value=7.8e-19 Score=164.01 Aligned_cols=162 Identities=10% Similarity=0.081 Sum_probs=104.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
....+|+++|.+|+|||||+++|++....... ..-|+...+.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~----~~~t~~~~~~---------------------------------- 56 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKH----ITATVGYNVE---------------------------------- 56 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----C----CCCCSSEEEE----------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccc----cccccceeEE----------------------------------
Confidence 55689999999999999999999875421100 0001110000
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc----------CCceEEE
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM----------RLQHIII 252 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~----------~~~~iIv 252 (531)
.+......+.||||||+++|...+...+..+|++|+|+|++.........+++..+... ...|+|+
T Consensus 57 ----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piil 132 (199)
T 4bas_A 57 ----TFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLF 132 (199)
T ss_dssp ----EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEE
T ss_pred ----EEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEE
Confidence 00011268999999999998877777889999999999998652111222333222221 1356999
Q ss_pred EEeccCCccHHHHHHHHHHHH--HHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 253 LQNKVDLIQENVAINQHEAIM--KFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 253 viNK~Dl~~~~~~~~~~~~i~--~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
|+||+|+.......+..+.+. .+.+ ...++++++||++|.|+++|+++|.+.+.
T Consensus 133 v~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 133 FANKMDAAGAKTAAELVEILDLTTLMG---DHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp EEECTTSTTCCCHHHHHHHHTHHHHHT---TSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred EEECcCCCCCCCHHHHHHHhcchhhcc---CCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 999999986532222222221 1112 24568999999999999999999987654
No 51
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.78 E-value=3.9e-19 Score=161.30 Aligned_cols=160 Identities=19% Similarity=0.208 Sum_probs=100.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+++|++.... ......++.+.... .+.+.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~-----------------------------~~~~~~- 49 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN---PSFITTIGIDFKIK-----------------------------TVDING- 49 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC---C-------CCEEEE-----------------------------EEESSS-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC---CCCCCccceeEEEE-----------------------------EEEECC-
Confidence 489999999999999999999965321 11111111111100 001111
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccH
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQE 262 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~ 262 (531)
....+.||||||+++|...+...+..+|++++|+|++..........++..+... ...|+++|+||+|+...
T Consensus 50 ------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1g16_A 50 ------KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123 (170)
T ss_dssp ------CEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC
T ss_pred ------EEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC
Confidence 1257999999999988766777788999999999998641111222333333332 23579999999999532
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
....+..+++.+.+ ..+++++||++|.|+++|+++|.+.+.
T Consensus 124 ~~~~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 124 VVTADQGEALAKEL------GIPFIESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp CSCHHHHHHHHHHH------TCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHc------CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 21112222222221 368999999999999999999986553
No 52
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.78 E-value=2.2e-18 Score=159.20 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=103.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++.... . .....++... .+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~------~--~~~t~g~~~~---------------------------~~~~~ 58 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS------H--ITPTQGFNIK---------------------------SVQSQ 58 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE------E--EEEETTEEEE---------------------------EEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC------c--ccCcCCeEEE---------------------------EEEEC
Confidence 34589999999999999999999875321 0 0111111000 00111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHH--cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEI--MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~--~~~~~iIvviNK~Dl 259 (531)
...+.+|||||++.|...+...+..+|++++|+|++.........+++. ++.. ....|+++|+||+|+
T Consensus 59 ---------~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (181)
T 1fzq_A 59 ---------GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129 (181)
T ss_dssp ---------TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred ---------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCc
Confidence 1689999999999988888888899999999999986411111222222 2221 133579999999999
Q ss_pred ccHHHHHHHHHHHHHHHh--cccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQ--GTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~--~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.... +++.+.+. .......+++++||++|+|+++++++|.+.+.
T Consensus 130 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 130 LTAAPA----SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp TTCCCH----HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred ccCCCH----HHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 764222 22322221 11123457999999999999999999987664
No 53
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=5.2e-19 Score=163.18 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=102.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+.++|+++|.+|+|||||+++|++.... ...-|+...+ ..+.+.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------~~~~t~~~~~-----------------------------~~~~~~ 63 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVV------HTSPTIGSNV-----------------------------EEIVIN 63 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCE------EEECCSSSSC-----------------------------EEEEET
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC------ccCCcCceee-----------------------------EEEEEC
Confidence 44589999999999999999999975320 0000110000 011111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH---cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI---MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~---~~~~~iIvviNK~Dl 259 (531)
...+.||||||+++|.......+..+|++++|+|++.........+.+..+.. ....|+++|+||+|+
T Consensus 64 ---------~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 64 ---------NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp ---------TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred ---------CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 26899999999998877777788999999999999875212222233332222 234679999999999
Q ss_pred ccHHHHHHHHHHHHHHHh--cccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 260 IQENVAINQHEAIMKFIQ--GTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~--~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
.+..... ++.+.+. .......+++++||++|.|+++|+++|.+.
T Consensus 135 ~~~~~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 135 KECMTVA----EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTCCCHH----HHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred ccCCCHH----HHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 7632212 2222221 111234589999999999999999999854
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.78 E-value=6.6e-19 Score=164.63 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=77.1
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAI 272 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i 272 (531)
..+.||||||+++|...+...+..+|++|+|+|++.+........++..+......|+++|+||+|+.... ...+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~---~~~~~~ 169 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ---VDILEV 169 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC---SCHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc---CCHHHH
Confidence 68999999999998888888889999999999998652111122333333332237899999999942211 112334
Q ss_pred HHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 273 MKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 273 ~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.++++. ...+++++||++|.|+++|+++|.+.+
T Consensus 170 ~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 170 QKYAQD---NNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHHH---TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 444433 246899999999999999999987644
No 55
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.78 E-value=5.1e-19 Score=162.09 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=104.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+....++.+.... .+.+.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~---~~~~~t~~~~~~~~-----------------------------~~~~~ 51 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG---KQYKQTIGLDFFLR-----------------------------RITLP 51 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT---HHHHHTTTSSEEEE-----------------------------EEEET
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC---CCCCCceeEEEEEE-----------------------------EEEeC
Confidence 34589999999999999999999965321 11111111111000 00011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc-----CCceEEEEEecc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM-----RLQHIIILQNKV 257 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~-----~~~~iIvviNK~ 257 (531)
+ .....+.||||||++.|.......+..+|++++|+|++..........++..+... +.+++++|+||+
T Consensus 52 ~------~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~ 125 (178)
T 2hxs_A 52 G------NLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125 (178)
T ss_dssp T------TEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECG
T ss_pred C------CCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcc
Confidence 0 01268999999999888777777789999999999998642111122333333332 556689999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
|+.+.... ..++..++.+. ...+++++||++|.|+++++++|.+.+..
T Consensus 126 Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 126 DLEHMRTI--KPEKHLRFCQE---NGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp GGGGGCSS--CHHHHHHHHHH---HTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred cccccccc--CHHHHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99753211 01122222222 13689999999999999999999876653
No 56
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1e-18 Score=158.61 Aligned_cols=161 Identities=12% Similarity=0.085 Sum_probs=103.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+++|++..... .... |+. .+++.. +...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~--t~~-------------------~~~~~~---------~~~~-- 47 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE---SYIP--TVE-------------------DTYRQV---------ISCD-- 47 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS---SCCC--CSC-------------------EEEEEE---------EEET--
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC---CCCC--Ccc-------------------ccEEEE---------EEEC--
Confidence 4899999999999999999999753210 0000 000 000000 0000
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc----CCceEEEEEeccCCc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM----RLQHIIILQNKVDLI 260 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~----~~~~iIvviNK~Dl~ 260 (531)
.....+.||||||+++|.......+..+|++++|+|++..........++..+... ...|+++|+||+|+.
T Consensus 48 -----~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 48 -----KSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp -----TEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred -----CEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 01257999999999988887778888999999999998642122233333333332 235699999999987
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+..... .++...+... ...+++++||++|.|+++|+++|.+.+..
T Consensus 123 ~~~~v~--~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 123 PSREVQ--SSEAEALART---WKCAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp GGCCSC--HHHHHHHHHH---HTCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred cccccC--HHHHHHHHHH---hCCeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 532211 1111222221 13689999999999999999999977654
No 57
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.77 E-value=2.3e-19 Score=177.37 Aligned_cols=155 Identities=18% Similarity=0.204 Sum_probs=102.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+|+|+|... ......|+|.+... ..+.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~---~v~~~~g~t~~~~~-----------------------------~~~~~~-- 48 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ---RVGNWAGVTVERKE-----------------------------GQFSTT-- 48 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE---EEEECTTSSSEEEE-----------------------------EEEECS--
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc---ccCCCCCeeEEEEE-----------------------------EEEEeC--
Confidence 47999999999999999999998631 11111222222111 011111
Q ss_pred ccccccceeeEEEEecCChhhHH------------HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEE
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILM------------ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIII 252 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~------------~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIv 252 (531)
...+.||||||+.++. .........+|++++|+|++.. .........+...++ |+|+
T Consensus 49 -------~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---~~~~~~~~~l~~~~~-p~iv 117 (274)
T 3i8s_A 49 -------DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---ERNLYLTLQLLELGI-PCIV 117 (274)
T ss_dssp -------SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---HHHHHHHHHHHHHTC-CEEE
T ss_pred -------CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---HHHHHHHHHHHhcCC-CEEE
Confidence 2689999999976543 1111223789999999999752 223344455556674 5999
Q ss_pred EEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 253 LQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 253 viNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
|+||+|+..........+.+.+.+ +++++++||++|.|+++|+++|.+.++.
T Consensus 118 v~NK~Dl~~~~~~~~~~~~l~~~l------g~~~i~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 118 ALNMLDIAEKQNIRIEIDALSARL------GCPVIPLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp EEECHHHHHHTTEEECHHHHHHHH------TSCEEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEECccchhhhhHHHHHHHHHHhc------CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 999999865332212233444433 3699999999999999999999987764
No 58
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=1.2e-18 Score=157.90 Aligned_cols=163 Identities=18% Similarity=0.158 Sum_probs=102.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+++|++.... .+....++.+..... +.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~-----------------------------~~~~-- 48 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFA---ENKEPTIGAAFLTQR-----------------------------VTIN-- 48 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC---TTCCCCSSEEEEEEE-----------------------------EEET--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEE-----------------------------EEEC--
Confidence 479999999999999999999865321 111111111110000 0001
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccH
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQE 262 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~ 262 (531)
.....+.||||||+++|...+...+..+|++++|+|++..........++..+... ...|+++|+||+|+...
T Consensus 49 -----~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 49 -----EHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp -----TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred -----CEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 01257999999999988877778889999999999998641111122223223222 23578999999999753
Q ss_pred HHHH-HHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 263 NVAI-NQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 263 ~~~~-~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.... ...++..++.+. ...+++++||++|.|+++|+++|.+.++
T Consensus 124 ~~~~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 124 GGERKVAREEGEKLAEE---KGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp SCCCCSCHHHHHHHHHH---HTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred ccccCCCHHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 1000 011112222221 2468999999999999999999987664
No 59
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.77 E-value=1.7e-18 Score=158.49 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=102.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+....++.+..... +.+.
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~-----------------------------~~~~ 52 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFD---TQLFHTIGVEFLNKD-----------------------------LEVD 52 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCC---C----CCSEEEEEEE-----------------------------EEET
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeeEEEEE-----------------------------EEEC
Confidence 34589999999999999999999864321 111111111110000 0011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcc-hHHHHHHHHH-c-----CCceEEEEEe
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ-TSEHLAAVEI-M-----RLQHIIILQN 255 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~q-t~e~l~~~~~-~-----~~~~iIvviN 255 (531)
+ ....+.||||||+++|.......+..+|++++|+|++.. ...+ ...++..+.. . ...|+++|+|
T Consensus 53 ~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~n 124 (177)
T 1wms_A 53 G-------HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDS-QSFQNLSNWKKEFIYYADVKEPESFPFVILGN 124 (177)
T ss_dssp T-------EEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEE
T ss_pred C-------EEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCH-HHHHHHHHHHHHHHHHccccccCCCcEEEEEE
Confidence 1 125799999999999988888888999999999999864 1111 1222222221 1 2357999999
Q ss_pred ccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 256 KVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 256 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
|+|+...... .+++.++.+. ....+++++||++|.|+++++++|.+.+
T Consensus 125 K~Dl~~~~~~---~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 125 KIDISERQVS---TEEAQAWCRD--NGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp CTTCSSCSSC---HHHHHHHHHH--TTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcccccccC---HHHHHHHHHh--cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999732211 1223333321 2457899999999999999999998654
No 60
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.77 E-value=1.9e-18 Score=155.43 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|.+|+|||||+++|++..... .+...+.|.+... ..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~-----------------------------~~~~~~--- 47 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV--VADVPGVTRDLKE-----------------------------GVVETD--- 47 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------CCEE-----------------------------EEEEET---
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee--ccCCCCceecceE-----------------------------EEEEeC---
Confidence 689999999999999999998753110 0001111111100 001111
Q ss_pred cccccceeeEEEEecCChhh-------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccC
Q 039945 186 NCRMKLLRHVSFVDCPGHDI-------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVD 258 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~-------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~D 258 (531)
...+.||||||+.. +.......+..+|++++|+|++.+ ..........++...+ .|+++|+||+|
T Consensus 48 ------~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~-~p~ilv~nK~D 119 (161)
T 2dyk_A 48 ------RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAE-LTQADYEVAEYLRRKG-KPVILVATKVD 119 (161)
T ss_dssp ------TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSC-CCHHHHHHHHHHHHHT-CCEEEEEECCC
T ss_pred ------CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCc-ccHhHHHHHHHHHhcC-CCEEEEEECcc
Confidence 25799999999876 455566778999999999999876 4544455556666556 45999999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+.+.. +++.++. . ....+++++||++|.|+++|+++|.+.+|
T Consensus 120 l~~~~------~~~~~~~-~--~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 120 DPKHE------LYLGPLY-G--LGFGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp SGGGG------GGCGGGG-G--GSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred cccch------HhHHHHH-h--CCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence 98642 1122222 1 12337999999999999999999987764
No 61
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.77 E-value=8.8e-19 Score=158.80 Aligned_cols=162 Identities=14% Similarity=0.119 Sum_probs=103.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+++|++..... ..+...+.+..... . .+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~--~-----------------------------~~~- 51 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHE-FQESTIGAAFLTQT--V-----------------------------CLD- 51 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEE--E-----------------------------EET-
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEE--E-----------------------------EEC-
Confidence 45899999999999999999998643210 00011111111100 0 000
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCcc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~ 261 (531)
.....+.||||||+++|.......+..+|++++|+|++..........++..+... ...|+++|.||+|+.+
T Consensus 52 ------~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 52 ------DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp ------TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred ------CEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 01268999999999998877778889999999999998641111222333333332 2356889999999865
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.... ..+++.++... ...+++++||++|.|+++|+++|.+.++
T Consensus 126 ~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 126 KRAV--DFQEAQSYADD---NSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp GCCS--CHHHHHHHHHH---TTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred cccc--CHHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 3211 11222333322 3468999999999999999999997765
No 62
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1e-18 Score=162.93 Aligned_cols=164 Identities=15% Similarity=0.094 Sum_probs=106.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++..... .....-+.+..... +.+.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~-------------------------------~~~~ 68 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH-NISPTIGASFMTKT-------------------------------VPCG 68 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT-TCCCCSSEEEEEEE-------------------------------EECS
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCCcceeEEEEE-------------------------------EEeC
Confidence 345899999999999999999998653210 00001111111100 0000
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvviNK~Dl~ 260 (531)
.....+.||||||+++|...+...+..+|++|+|+|++..........++..+.... ..|+++|+||+|+.
T Consensus 69 -------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 69 -------NELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp -------SSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred -------CEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 012689999999999888777778899999999999986521112223333444332 36799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+.... ..+++.++++. ...+++++||++|.|+++|+++|.+.++.
T Consensus 142 ~~~~v--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 142 DIREV--PLKDAKEYAES---IGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp GGCCS--CHHHHHHHHHT---TTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred ccccc--CHHHHHHHHHH---cCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 42211 12334444432 34689999999999999999999987754
No 63
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.77 E-value=7e-19 Score=163.52 Aligned_cols=161 Identities=12% Similarity=0.116 Sum_probs=103.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+.++|+++|.+|+|||||+++|++.... .. ...-|+.... ..+.+.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~--~~~~t~~~~~-----------------------------~~~~~~ 65 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQ--SQ--NILPTIGFSI-----------------------------EKFKSS 65 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGC--CS--SCCCCSSEEE-----------------------------EEEECS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--CC--CcCCccceeE-----------------------------EEEEEC
Confidence 44589999999999999999999875310 00 0111111100 001111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHHc----CCceEEEEEecc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEIM----RLQHIIILQNKV 257 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~~----~~~~iIvviNK~ 257 (531)
...+.||||||+++|...+...+..+|++|+|+|++...........+. ++... ...|+++|+||+
T Consensus 66 ---------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 136 (190)
T 2h57_A 66 ---------SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136 (190)
T ss_dssp ---------SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECT
T ss_pred ---------CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCc
Confidence 1689999999998887777778899999999999976411112223332 23221 235799999999
Q ss_pred CCccHHHHHHHHHHHHHHHh--cccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 258 DLIQENVAINQHEAIMKFIQ--GTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~--~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
|+.+.... +++.+.+. .......+++++||++|.|+++|+++|.+.+.
T Consensus 137 Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 137 DLRDAVTS----VKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TSTTCCCH----HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CcccCCCH----HHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 99754222 22333332 21123568999999999999999999987664
No 64
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=1.1e-18 Score=184.99 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=115.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+|+|++.. +.+ +.+.|+++++.. ...+.+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~---------~~~-----------------~~~~~gtt~~~~-----~~~~~~~ 241 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEE---------RVI-----------------VSNVAGTTRDAV-----DTSFTYN 241 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTST---------TEE-----------------ECC------CTT-----SEEEEET
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCC---------ccc-----------------cCCCCCeEEEEE-----EEEEEEC
Confidence 456899999999999999999999753 111 112355555532 1122233
Q ss_pred CCccccccceeeEEEEecCC----------hhhHHH-HHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEE
Q 039945 183 GFENCRMKLLRHVSFVDCPG----------HDILMA-TMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHII 251 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG----------~~~~~~-~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iI 251 (531)
| ..++|||||| ++.|.. .+...+..+|++|+|+|++++ ...++.+++..+...+ .|+|
T Consensus 242 ~---------~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~-~~~~~~~~~~~~~~~~-~~~i 310 (456)
T 4dcu_A 242 Q---------QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG-IIEQDKRIAGYAHEAG-KAVV 310 (456)
T ss_dssp T---------EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC-CCHHHHHHHHHHHHTT-CEEE
T ss_pred C---------ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCC-cCHHHHHHHHHHHHcC-CCEE
Confidence 2 6899999999 455543 345678999999999999998 7888888888887777 5699
Q ss_pred EEEeccCCccHH--HHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 252 ILQNKVDLIQEN--VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 252 vviNK~Dl~~~~--~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+|+||+|+.+.. ..++..+.+.+.+.. ....+++++||++|.|+++|+++|.+.+
T Consensus 311 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 311 IVVNKWDAVDKDESTMKEFEENIRDHFQF--LDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp EEEECGGGSCCCSSHHHHHHHHHHHHCGG--GTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred EEEEChhcCCCchHHHHHHHHHHHHhccc--CCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 999999998532 334444555555432 2457999999999999999999987654
No 65
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.77 E-value=3e-18 Score=162.40 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=99.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|+++|++|+|||||+++|++.... ....++...+.. +.+.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~------~~~~~~~~~~~~-----------------------------~~~~ 49 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYR------DTQTSITDSSAI-----------------------------YKVN 49 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCC------CBCCCCSCEEEE-----------------------------EECS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc------cccCCcceeeEE-----------------------------EEec
Confidence 44589999999999999999999864311 011111110000 1111
Q ss_pred CCccccccceeeEEEEecCChhhHHH-HHHHhccccCceEEEEeCCCCCCCcchHHHHHH----HHH----cCCceEEEE
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMA-TMLNGAAIMDGALLLIAANESCPQPQTSEHLAA----VEI----MRLQHIIIL 253 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~-~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~----~~~----~~~~~iIvv 253 (531)
+ .....+.||||||+.+|.. .....+..+|++|+|+|++.. .....+.... +.. ....|+++|
T Consensus 50 ~------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~piilv 121 (214)
T 2fh5_B 50 N------NRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF--QREVKDVAEFLYQVLIDSMALKNSPSLLIA 121 (214)
T ss_dssp S------TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH--HHHHHHHHHHHHHHHHHHHTSTTCCEEEEE
T ss_pred C------CCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc--CHHHHHHHHHHHHHHhhhhhcccCCCEEEE
Confidence 0 0016799999999999887 445557899999999998752 2222222222 211 113579999
Q ss_pred EeccCCccHHHHHHHHHHHHHHHh-------------------cccCC-------------CCCEEEecccCc------c
Q 039945 254 QNKVDLIQENVAINQHEAIMKFIQ-------------------GTVAD-------------GAPVVPISAQLK------Y 295 (531)
Q Consensus 254 iNK~Dl~~~~~~~~~~~~i~~~l~-------------------~~~~~-------------~~~ii~iSa~~g------~ 295 (531)
+||+|+..........+.+.+.+. ..... .++++++||++| .
T Consensus 122 ~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~ 201 (214)
T 2fh5_B 122 CNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSA 201 (214)
T ss_dssp EECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CC
T ss_pred EECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcccccc
Confidence 999999865444444445544333 10111 567999999999 9
Q ss_pred chHHHHHHHHcc
Q 039945 296 NIDVVCEYIVKK 307 (531)
Q Consensus 296 gi~~L~~~L~~~ 307 (531)
||++|+++|.+.
T Consensus 202 gv~~lf~~l~~~ 213 (214)
T 2fh5_B 202 DIQDLEKWLAKI 213 (214)
T ss_dssp BCHHHHHHHHHH
T ss_pred ChHHHHHHHHHh
Confidence 999999999754
No 66
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.77 E-value=7.3e-19 Score=161.20 Aligned_cols=162 Identities=15% Similarity=0.144 Sum_probs=103.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++.... .+....++.+.....+ .+.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~~~~-----------------------------~~~ 54 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS---GSYITTIGVDFKIRTV-----------------------------EIN 54 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC------CCTTTBSEEEEEEEE-----------------------------EET
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC---CccCCCceeEEEEEEE-----------------------------EEC
Confidence 45589999999999999999999875321 1111222222111100 011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHHcCCceEEEEEeccCCcc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~~~~~~iIvviNK~Dl~~ 261 (531)
+ ....+.||||||+++|.......+..+|++++|+|++.+........++. +.......|+++|+||+|+.+
T Consensus 55 ~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 55 G-------EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE 127 (181)
T ss_dssp T-------EEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred C-------EEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence 1 12579999999999887777777899999999999986411111122222 223333467999999999875
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
..... .++...+... ...+++++||++|.|+++|+++|.+.+
T Consensus 128 ~~~~~--~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 128 RKVVE--TEDAYKFAGQ---MGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp GCCSC--HHHHHHHHHH---HTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hcccC--HHHHHHHHHH---cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 32111 1112222221 146899999999999999999998654
No 67
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=162.73 Aligned_cols=162 Identities=14% Similarity=0.212 Sum_probs=103.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+....++.+..... +.+.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~-----------------------------~~~~ 71 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC---EACKSTVGVDFKIKT-----------------------------VELR 71 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-----------CCTTEEEEEEE-----------------------------EEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC---cCCCCccceeEEEEE-----------------------------EEEC
Confidence 44589999999999999999999875321 111111111111100 0011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch-HHHHHHHHHc--CCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT-SEHLAAVEIM--RLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~~~~--~~~~iIvviNK~Dl 259 (531)
+ ....+.||||||+++|...+...+..+|++|+|+|++.. ...+. ..++..+... ...|+++|+||+|+
T Consensus 72 ~-------~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~-~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl 143 (192)
T 2il1_A 72 G-------KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK-ETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143 (192)
T ss_dssp T-------EEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred C-------eEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 1 125799999999999988888888999999999999865 22222 2333444433 23579999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.+.... ..+++.++.+. ....+++++||++|.|+++|+++|.+.+
T Consensus 144 ~~~~~v--~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 144 ETDREI--TRQQGEKFAQQ--ITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp GGGCCS--CHHHHHHHHHT--STTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccccc--CHHHHHHHHHh--cCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 753211 11223333322 2357899999999999999999987643
No 68
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.77 E-value=1.6e-18 Score=157.18 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=104.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+.++|+++|++|+|||||+++|++..... ......+.+..... . .+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~--~-----------------------------~~-- 50 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDP-NINPTIGASFMTKT--V-----------------------------QY-- 50 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEE--E-----------------------------EE--
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEE--E-----------------------------EE--
Confidence 35899999999999999999998653210 00001111111100 0 00
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCcc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~ 261 (531)
......+.||||||+++|.......+..+|++++|+|++..........++..+... ...|+++|+||+|+.+
T Consensus 51 -----~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 51 -----QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp -----TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred -----CCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 011267999999999988777777889999999999998642111222333444433 2357899999999975
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.... ..++...+.+. ...+++++||++|.|+++|+++|.+.++
T Consensus 126 ~~~v--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 126 VREV--MERDAKDYADS---IHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp GCCS--CHHHHHHHHHH---TTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred cccc--CHHHHHHHHHH---cCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 3221 11122222222 2468999999999999999999987765
No 69
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.77 E-value=5e-19 Score=173.03 Aligned_cols=151 Identities=16% Similarity=0.161 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|++|+|||||+|+|+|... ..... |++|.+.. ...+.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~---~v~~~------------------------pg~Tv~~~-----~~~~~~~--- 46 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ---RVGNW------------------------PGVTVEKK-----TGEFLLG--- 46 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE---EEEEC------------------------TTSSSEEE-----EEEEEET---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC---CccCC------------------------CCceEEEE-----EEEEEEC---
Confidence 5799999999999999999998631 11111 22222210 0111112
Q ss_pred cccccceeeEEEEecCChhhHHH----------HHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEE
Q 039945 186 NCRMKLLRHVSFVDCPGHDILMA----------TMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIIL 253 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~~~~----------~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvv 253 (531)
+..+.||||||+.++.. .....+ ..+|++|+|+|++.. .........+..++ .|+++|
T Consensus 47 ------~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---~~~~~l~~~l~~~~-~pvilv 116 (256)
T 3iby_A 47 ------EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---ERHLYLTSQLFELG-KPVVVA 116 (256)
T ss_dssp ------TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---HHHHHHHHHHTTSC-SCEEEE
T ss_pred ------CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---hhHHHHHHHHHHcC-CCEEEE
Confidence 26899999999865432 122233 789999999999752 22233334455556 469999
Q ss_pred EeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 254 QNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 254 iNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
+||+|+..........+.+.+.+ .+|++++||++|.|+++|+++|.+.
T Consensus 117 ~NK~Dl~~~~~~~~~~~~l~~~l------g~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 117 LNMMDIAEHRGISIDTEKLESLL------GCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EECHHHHHHTTCEECHHHHHHHH------CSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred EEChhcCCcCCcHHHHHHHHHHc------CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 99999875432222233444443 4799999999999999999999975
No 70
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=162.50 Aligned_cols=163 Identities=14% Similarity=0.173 Sum_probs=105.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++... ..+....++.+.....+ .+.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~-----------------------------~~~ 61 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTY---TESYISTIGVDFKIRTI-----------------------------ELD 61 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC---CSCCCCCSSEEEEEEEE-----------------------------EET
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC---CCCCCCcccceEEEEEE-----------------------------EEC
Confidence 3458999999999999999999986432 11111222222111100 011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvviNK~Dl~ 260 (531)
+ ....+.||||||+++|.......+..+|++|+|+|++..........++..+.... ..|+++|+||+|+.
T Consensus 62 ~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 62 G-------KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp T-------EEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred C-------EEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 1 12579999999999888778888899999999999986411112233333343331 35799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+..... .++..++... ...+++++||++|.|+++++++|.+.+.
T Consensus 135 ~~~~~~--~~~~~~~~~~---~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 135 TKKVVD--YTTAKEFADS---LGIPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp TTCCSC--HHHHHHHHHH---TTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccccC--HHHHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 542211 1112222221 2468999999999999999999886553
No 71
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.76 E-value=1.9e-18 Score=158.52 Aligned_cols=165 Identities=14% Similarity=0.156 Sum_probs=93.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|+++|++|+|||||+++|++.... .+....++.+... . .+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~-------------------~----------~~~~~ 53 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYS---QQYKATIGADFLT-------------------K----------EVTVD 53 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC---TTC---CCCSCEE-------------------E----------EECCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCC---cccCCccceEEEE-------------------E----------EEEEc
Confidence 45689999999999999999999865321 1111111111100 0 01111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HHc-----CCceEEEEEec
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EIM-----RLQHIIILQNK 256 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~~-----~~~~iIvviNK 256 (531)
+ .....+.||||||+++|.......+..+|++|+|+|++..........++..+ ... ...|+++|+||
T Consensus 54 ~------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 54 G------DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp S------SCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred C------CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 0 01157999999999998888888889999999999998641111122222222 221 23579999999
Q ss_pred cCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 257 VDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 257 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+|+...... ...+++.++.+. ....+++++||++|.|+++|+++|.+.+
T Consensus 128 ~Dl~~~~~~-v~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 128 IDAEESKKI-VSEKSAQELAKS--LGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp TTSCGGGCC-SCHHHHHHHHHH--TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred Ccccccccc-CCHHHHHHHHHh--cCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 999643210 011122222221 2457899999999999999999987643
No 72
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2.4e-18 Score=157.87 Aligned_cols=164 Identities=18% Similarity=0.241 Sum_probs=97.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|+++|++|+|||||+++|++..... ......++.+.... .+.+.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~t~~~~~~~~-----------------------------~~~~~ 56 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA--GTFISTVGIDFRNK-----------------------------VLDVD 56 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC--CCCCCCCSCEEEEE-----------------------------EEEET
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC--CCcCCceeeEEEEE-----------------------------EEEEC
Confidence 445899999999999999999998653210 00011111111000 00011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
+ ....+.||||||+++|...+...+..+|++++|+|++..........++..+... ...|+++|+||+|+.
T Consensus 57 ~-------~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 57 G-------VKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp T-------EEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred C-------EEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 1 1257999999999998888888889999999999998641111122333333332 235799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+.... ..++..++.+. ...+++++||++|.|+++|+++|.+.+.
T Consensus 130 ~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 130 HERVV--KREDGEKLAKE---YGLPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp SCCCS--CHHHHHHHHHH---HTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccc--CHHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 53211 01112222221 1368999999999999999999987654
No 73
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.76 E-value=8.7e-19 Score=164.48 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=97.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+..+|+++|++|+|||||+++|++.... ...-|+... ...+.+.+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~------~~~~t~~~~-----------------------------~~~~~~~~ 68 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG------QHVPTLHPT-----------------------------SEELTIAG 68 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------------CCCCCS-----------------------------CEEEEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC------ccCCCCCce-----------------------------eEEEEECC
Confidence 3478999999999999999999865311 000011000 01112222
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH---cCCceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI---MRLQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~---~~~~~iIvviNK~Dl~ 260 (531)
..+.+|||||+++|...+...+..+|++++|+|++...........+..+.. ....|+++|+||+|+.
T Consensus 69 ---------~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 69 ---------MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp ---------EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred ---------EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 6899999999988766666677899999999999864211112223322221 1335799999999997
Q ss_pred cHHHHHHHHHHHHHHHhccc--------------CCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTV--------------ADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~--------------~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.. ..+++.+.+.... ....+++++||++|+|+++++++|.+.+
T Consensus 140 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 140 EAI----SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TCC----CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccC----CHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 521 1223344433210 1345799999999999999999998654
No 74
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.76 E-value=9.9e-19 Score=162.92 Aligned_cols=157 Identities=13% Similarity=0.053 Sum_probs=100.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+..+|+++|++|+|||||+++|++..... ..-|+.... ..+.+.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~------~~~t~~~~~-----------------------------~~~~~~ 65 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT------LQPTWHPTS-----------------------------EELAIG 65 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC------CCCCCSCEE-----------------------------EEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc------cccCCCCCe-----------------------------EEEEEC
Confidence 344799999999999999999998643210 000110000 011111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH---cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI---MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~---~~~~~iIvviNK~Dl 259 (531)
...+.++||||+++|.......+..+|++++|+|++...........+..+.. ....|+++|+||+|+
T Consensus 66 ---------~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 136 (190)
T 1m2o_B 66 ---------NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDA 136 (190)
T ss_dssp ---------TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred ---------CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCC
Confidence 26899999999998876666778899999999999865211112222222221 134679999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcc---------cCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 260 IQENVAINQHEAIMKFIQGT---------VADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~---------~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
..... .+++.+.+... .....+++++||++|.|+++++++|.+.
T Consensus 137 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 137 PNAVS----EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTCCC----HHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cCCCC----HHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 75211 23344443321 1234679999999999999999999864
No 75
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=8.8e-19 Score=165.58 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=101.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++.... .+....++.+.... .+.+.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~-----------------------------~~~~~ 65 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFN---PSFITTIGIDFKIK-----------------------------TVDIN 65 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCC---CSSSCCCSCCEEEE-----------------------------EEEET
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC---cccCCcccceEEEE-----------------------------EEEEC
Confidence 44589999999999999999999865321 11111111111000 00111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
+ ....+.||||||+++|...+...+..+|++|+|+|++..........++..+... ...|+++|+||+|+.
T Consensus 66 ~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 66 G-------KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp T-------EEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred C-------EEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 1 1257999999999988776777788999999999998641111123333333332 135799999999995
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
......+..+++.+.+ ..+++++||++|.|+++|+++|.+.+.
T Consensus 139 ~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 139 TRVVTADQGEALAKEL------GIPFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp SCCSCHHHHHHHHHHH------TCCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc------CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3221112222222221 358999999999999999999886553
No 76
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.76 E-value=2.1e-18 Score=157.77 Aligned_cols=161 Identities=15% Similarity=0.145 Sum_probs=102.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+++|++.... ......++.+.....+ .+.+
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~~-----------------------------~~~~- 60 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFD---NTYQATIGIDFLSKTM-----------------------------YLED- 60 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC---SSCCCCCSEEEEEEEE-----------------------------EETT-
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeEEEEEEE-----------------------------EECC-
Confidence 489999999999999999999854321 1111111111111000 0110
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccH
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQE 262 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~ 262 (531)
....+.||||||+++|.......+..+|++++|+|++..........++..+... ...|+++|+||+|+.+.
T Consensus 61 ------~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 61 ------RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp ------EEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred ------eEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 1257999999999988777777788999999999997641111222333322221 23579999999999753
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
... ..++...+.+. ...+++++||++|.|+++|+++|.+.++
T Consensus 135 ~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 135 RQV--STEEGERKAKE---LNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp CCS--CHHHHHHHHHH---HTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred CcC--CHHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 211 01122222222 1468999999999999999999997765
No 77
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.76 E-value=5.5e-18 Score=157.13 Aligned_cols=172 Identities=16% Similarity=0.180 Sum_probs=105.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++.... .+ ..-|+...+.........+ .+ ..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~--~~~t~~~~~~~~~~~~~~~----~~------------~~----- 62 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFN---SK--FITTVGIDFREKRVVYRAN----GP------------DG----- 62 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC---CS--CCCCCSEEEEEEEEEECTT----SC------------CC-----
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCC---cC--cccccceeeeeEEEEEecC----Cc------------cc-----
Confidence 34589999999999999999999864321 11 1111111111000111100 00 00
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl 259 (531)
.........+.|+||||+++|.......+..+|++|+|+|++..........++..+... ...|+++|+||+|+
T Consensus 63 ---~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (195)
T 3bc1_A 63 ---AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDL 139 (195)
T ss_dssp ---SSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTC
T ss_pred ---ccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 000111268999999999999988888999999999999998642111123333333321 23579999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.+.... ..+++.++... ...+++++||++|.|+++|+++|.+.+
T Consensus 140 ~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 140 EDQRAV--KEEEARELAEK---YGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp GGGCCS--CHHHHHHHHHH---HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccccc--CHHHHHHHHHH---cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 753211 11222222222 136899999999999999999988654
No 78
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.76 E-value=1.3e-18 Score=162.46 Aligned_cols=159 Identities=13% Similarity=0.117 Sum_probs=98.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
++.++|+++|++|+|||||+++|++.... ...-|+..... .+.+.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~------~~~~t~~~~~~-----------------------------~~~~~ 71 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVE-----------------------------TVEYK 71 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE------EEEEETTEEEE-----------------------------EEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc------ccCCcCceeEE-----------------------------EEEEC
Confidence 45689999999999999999999864321 00011111000 00111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH---cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI---MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~---~~~~~iIvviNK~Dl 259 (531)
...+.||||||+++|.......+..+|++++|+|++...........+..+.. ....|+++|+||+|+
T Consensus 72 ---------~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 142 (192)
T 2b6h_A 72 ---------NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142 (192)
T ss_dssp ---------TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred ---------CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCC
Confidence 26899999999988876667778899999999999864211112222222211 124679999999999
Q ss_pred ccHHHHHHHHHHHHHHHhc--ccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQG--TVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~--~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+..... ++.+.+.. ......+++++||++|.|+++|+++|.+.+.
T Consensus 143 ~~~~~~~----~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 143 PNAMPVS----ELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTCCCHH----HHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred CCCCCHH----HHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 7642222 22222211 1123457999999999999999999987654
No 79
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.76 E-value=1e-18 Score=164.42 Aligned_cols=163 Identities=14% Similarity=0.145 Sum_probs=102.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|+++|++|+|||||+++|++.... ......++.+..... +.+.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~-----------------------------~~~~ 53 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKE-----------------------------VMVD 53 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC---SSCCCCCSEEEEEEE-----------------------------EESS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC---CCCCCcccceEEEEE-----------------------------EEEC
Confidence 45689999999999999999999865321 111111111111000 0001
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHHc-----CCceEEEEEec
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEIM-----RLQHIIILQNK 256 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~~-----~~~~iIvviNK 256 (531)
+ ....+.||||||+++|.......+..+|++|+|+|++..........++. +.... ...|+++|+||
T Consensus 54 ~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (207)
T 1vg8_A 54 D-------RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126 (207)
T ss_dssp S-------CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred C-------EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 0 12579999999998887666677889999999999986411111122222 22222 13569999999
Q ss_pred cCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 257 VDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 257 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+|+....... +++.++... ....+++++||++|.|+++|+++|.+.+.
T Consensus 127 ~Dl~~~~~~~---~~~~~~~~~--~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 127 IDLENRQVAT---KRAQAWCYS--KNNIPYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTSSCCCSCH---HHHHHHHHH--TTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCcccccCH---HHHHHHHHh--cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9997432111 222222221 24578999999999999999999986553
No 80
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.76 E-value=2.1e-18 Score=155.98 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=100.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+++|++.... .+... |+...+. ..+ .+.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~---~~~~~--t~~~~~~--~~~--------------------------~~~-- 47 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV---EKYDP--TIEDSYR--KQV--------------------------EVD-- 47 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC---CSCCC--CSEEEEE--EEE--------------------------ESS--
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC---CCCCC--CccceEE--EEE--------------------------EEC--
Confidence 479999999999999999999864211 00000 1111000 000 001
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH---cCCceEEEEEeccCCcc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI---MRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~---~~~~~iIvviNK~Dl~~ 261 (531)
.....+.||||||+++|.......+..+|++++|+|++..........++..+.. ....|+++|+||+|+.+
T Consensus 48 -----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 48 -----CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp -----SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred -----CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 0125799999999988877777778889999999999763111112223322222 22357999999999975
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.... ..+++.++.+. ....+++++||++|.|+++|+++|.+.+
T Consensus 123 ~~~~--~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 123 ERVV--GKEQGQNLARQ--WCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp GCCS--CHHHHHHHHHH--TTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccC--CHHHHHHHHHH--ccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 3211 11222233322 2357899999999999999999998654
No 81
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=3.4e-18 Score=161.00 Aligned_cols=163 Identities=13% Similarity=0.132 Sum_probs=104.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+....++.+..... +.+.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~-----------------------------~~~~ 71 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKT-----------------------------VEIN 71 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC---TTCCCCCSEEEEEEE-----------------------------EEET
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCC---CCCCCccceeEEEEE-----------------------------EEEC
Confidence 34589999999999999999999864321 111111111111100 0011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
+ ....+.||||||+++|.......+..+|++|+|+|++..........++..+... ...|+++|+||+|+.
T Consensus 72 ~-------~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 72 G-------EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp T-------EEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred C-------EEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 1 1257999999999999888888899999999999997641111122333333332 235789999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+.... ..+++.++... ...+++++||++|.|+++|+++|.+.+.
T Consensus 145 ~~~~v--~~~~~~~~~~~---~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 145 ERREV--SQQRAEEFSEA---QDMYYLETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp GGCSS--CHHHHHHHHHH---HTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccc--CHHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 43211 01122222221 2468999999999999999999876553
No 82
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.76 E-value=2.1e-18 Score=157.85 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=104.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... ......+..+.... .+.+.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~-----------------------------~~~~~ 60 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFM---ADCPHTIGVEFGTR-----------------------------IIEVS 60 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC---SSCTTSCCCCEEEE-----------------------------EEEET
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCccceEEEEE-----------------------------EEEEC
Confidence 44689999999999999999999865321 00000000000000 00000
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
.....+.||||||+++|.......+..+|++++|+|++..........++..+... ...|+++|+||+|+.
T Consensus 61 -------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 61 -------GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp -------TEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred -------CeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 01257999999999998888888889999999999998641111122233333332 235799999999996
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... ..+++.++++. ...+++++||++|.|+++++++|.+.+
T Consensus 134 ~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 134 AQRDV--TYEEAKQFAEE---NGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp GGCCS--CHHHHHHHHHH---TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccc--CHHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 43211 12233333332 246899999999999999999988654
No 83
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=3.6e-18 Score=159.49 Aligned_cols=162 Identities=14% Similarity=0.111 Sum_probs=102.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++..... . ..-|+... ++.. +.+.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~---~--~~~t~~~~-------------------~~~~---------~~~~ 52 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD---T--YIPTIEDT-------------------YRQV---------ISCD 52 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC---T--TSCCCCEE-------------------EEEE---------EEET
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC---c--ccCccccc-------------------eeEE---------EEEC
Confidence 345899999999999999999998643210 0 00010000 0000 0000
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc----CCceEEEEEeccC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM----RLQHIIILQNKVD 258 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~----~~~~iIvviNK~D 258 (531)
.....+.||||||+.+|.......+..+|++++|+|++..........++..+... ...|+++|+||+|
T Consensus 53 -------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~D 125 (199)
T 2gf0_A 53 -------KSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125 (199)
T ss_dssp -------TEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTT
T ss_pred -------CEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 01257999999999988877777889999999999997631111222333333322 1246999999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+.......+. ...+... ...+++++||++|.|+++|+++|.+.+..
T Consensus 126 l~~~~~~~~~---~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 126 ETQREVDTRE---AQAVAQE---WKCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp CSSCSSCHHH---HHHHHHH---HTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred CCccccCHHH---HHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 9753211111 2222221 13589999999999999999999977654
No 84
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.76 E-value=4.3e-18 Score=159.79 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=103.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+++|++...... .....+.+..... + .+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~--~-----------------------------~~~- 53 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKT--I-----------------------------YRN- 53 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSC-CCCCCSEEEEEEE--E-----------------------------EET-
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEE--E-----------------------------EEC-
Confidence 458999999999999999999997542100 0001111111100 0 000
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCcc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~ 261 (531)
.....+.||||||+++|...+...+..+|++|+|+|++..........++..+... ...|+++|+||+|+.+
T Consensus 54 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 54 ------DKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp ------TEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred ------CeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 11268999999999999888888899999999999998641111122333333332 2467999999999975
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.... ..+++.++.+.. ..+++++||++|.|+++|+++|.+.+
T Consensus 128 ~~~~--~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 128 ERVV--SSERGRQLADHL---GFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp SCCS--CHHHHHHHHHHH---TCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred cccc--CHHHHHHHHHHC---CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3211 011222222221 35899999999999999999987654
No 85
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.76 E-value=2.4e-18 Score=159.01 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=99.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+++|++.... .... +.+.+... ..+.+.+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~-~t~~~~~~-----------------------------~~~~~~~ 49 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV---DEYD-PTIEDSYR-----------------------------KQVVIDG 49 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC---CCCC-TTCCEEEE-----------------------------EEEEETT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC---CCCC-CCchheEE-----------------------------EEEEECC
Confidence 4589999999999999999999864311 0000 00000000 0000111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH-c--CCceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI-M--RLQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~-~--~~~~iIvviNK~Dl~ 260 (531)
....+.||||||+++|.......+..+|++++|+|++..........++..+.. . ...|+++|+||+|+.
T Consensus 50 -------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 50 -------ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp -------EEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred -------cEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 125688999999988877777778889999999999864111112222222222 1 235799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
......+..+.+.+.+ ..+++++||++|.|+++|+++|.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 123 SRTVDTKQAQDLARSY------GIPFIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp SCSSCHHHHHHHHHHH------TCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5432223333333322 368999999999999999999986553
No 86
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.76 E-value=1.1e-18 Score=158.42 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=96.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++.... .+....++.+.... .+.+.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~-----------------------------~~~~~ 51 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFN---DKHITTLGASFLTK-----------------------------KLNIG 51 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCC---SSCCCCCSCEEEEE-----------------------------EEESS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC---cCCCCccceEEEEE-----------------------------EEEEC
Confidence 34589999999999999999999865321 00011111111000 00111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
+ ....+.||||||+++|.......+..+|++++|+|++..........++..+... ...|+++|+||+|+.
T Consensus 52 ~-------~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 52 G-------KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp S-------CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred C-------EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 1 1257899999999988777777789999999999997641111122233223221 235799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... ..+++.++.+. ...+++++||++|.|+++|+++|.+.+
T Consensus 125 ~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 125 KERHV--SIQEAESYAES---VGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp GGCCS--CHHHHHHHHHH---TTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ccccc--CHHHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 53211 11223333332 246899999999999999999998654
No 87
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.76 E-value=1.4e-18 Score=161.43 Aligned_cols=162 Identities=16% Similarity=0.147 Sum_probs=103.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|+++|.+|+|||||+++|++.... ......++.+.....+ .+.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~-----------------------------~~~ 67 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFT---PAFVSTVGIDFKVKTV-----------------------------YRH 67 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC---CSCCCCCCCEEEEEEE-----------------------------EET
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCC---CCcCCceeEEEEEEEE-----------------------------EEC
Confidence 34589999999999999999999865321 0001111111100000 000
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
.....+.||||||+++|.......+..+|++|+|+|++..........++..+... ...|+++|+||+|+.
T Consensus 68 -------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 68 -------DKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp -------TEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred -------CeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 11268999999999887777777789999999999997642112223344444443 246799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... ..+++.++.+.. ..+++++||++|.|+++|+++|.+.+
T Consensus 141 ~~~~~--~~~~~~~~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 141 DERVV--PAEDGRRLADDL---GFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp GGCCS--CHHHHHHHHHHH---TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCC--CHHHHHHHHHHc---CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 53211 012222222221 35899999999999999999998654
No 88
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=2.6e-18 Score=181.23 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|++|+|||||+|+|++... .+ +.+.|++|++.. ...+.|.|
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~---------~~-----------------v~~~~g~T~d~~-----~~~~~~~~-- 48 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK---------AI-----------------VEDEEGVTRDPV-----QDTVEWYG-- 48 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------------------------------CCS-----EEEEEETT--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---------ce-----------------ecCCCCCcccee-----eEEEEECC--
Confidence 4689999999999999999998531 11 123466666642 22334443
Q ss_pred cccccceeeEEEEecCChhh---------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEec
Q 039945 186 NCRMKLLRHVSFVDCPGHDI---------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK 256 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~---------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK 256 (531)
..+.||||||... +...+...+..||++|+|+|++.+ ......+...+++..+ +|+++|+||
T Consensus 49 -------~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~-~~~~d~~i~~~l~~~~-~p~ilv~NK 119 (439)
T 1mky_A 49 -------KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRG-ITKEDESLADFLRKST-VDTILVANK 119 (439)
T ss_dssp -------EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTC-CCHHHHHHHHHHHHHT-CCEEEEEES
T ss_pred -------eEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHcC-CCEEEEEeC
Confidence 6899999999653 345566678999999999999887 5555555556666666 569999999
Q ss_pred cCCccHHHHHHHHHHH-HHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 257 VDLIQENVAINQHEAI-MKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 257 ~Dl~~~~~~~~~~~~i-~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+|+.... . .++ .++. . ....+++++||++|.|+++|+++|.+.++
T Consensus 120 ~D~~~~~--~---~~~~~~~~-~--lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 120 AENLREF--E---REVKPELY-S--LGFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp CCSHHHH--H---HHTHHHHG-G--GSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCcccc--H---HHHHHHHH-h--cCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 9986421 1 122 2232 1 12236899999999999999999987765
No 89
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.75 E-value=3.6e-18 Score=154.12 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=99.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+++|++.... ......+.... . . .+.+.+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~-~---~--------------------------~~~~~~- 48 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFI---EKYDPTIEDFY-R---K--------------------------EIEVDS- 48 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC---SCCCTTCCEEE-E---E--------------------------EEEETT-
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCc---ccCCCCcceeE-E---E--------------------------EEEECC-
Confidence 479999999999999999999854311 00000000000 0 0 000111
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHHc--CCceEEEEEeccCCcc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEIM--RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~~--~~~~iIvviNK~Dl~~ 261 (531)
....+.|+||||+++|.......+..+|++++|+|++...........+ .+.... ...|+++|+||+|+.+
T Consensus 49 ------~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 49 ------SPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp ------EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred ------EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 1256999999999988887777889999999999998641111122222 222322 2357999999999875
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.... ..++..++.+. ...+++++||++|.|+++|+++|.+.+
T Consensus 123 ~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 123 EREV--SSSEGRALAEE---WGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp GCCS--CHHHHHHHHHH---HTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred cccC--CHHHHHHHHHH---hCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 3221 01122222222 146899999999999999999997643
No 90
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=159.34 Aligned_cols=165 Identities=18% Similarity=0.121 Sum_probs=101.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|+++|.+|+|||||+++|++.... .+.. -|+...+... .+.+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~--~t~~~~~~~~---------------------------~~~~~ 73 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFR---ENIS--ATLGVDFQMK---------------------------TLIVD 73 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC---------------CEEE---------------------------EEEET
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCC---ccCC--CCccceeEEE---------------------------EEEEC
Confidence 45689999999999999999999865321 0000 0111111000 00011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
.....+.||||||+++|...+...+..+|++|+|+|++..........++..+... ...|+++|+||+|+.
T Consensus 74 -------~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 74 -------GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp -------TEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred -------CEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 11257999999999999888888889999999999998642111222333334332 135699999999996
Q ss_pred cHHHHH---H-HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 261 QENVAI---N-QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 261 ~~~~~~---~-~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+....+ . ..++..++.+. ...+++++||++|.|+++++++|.+.+.
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 147 DTAATEGQKCVPGHFGEKLAMT---YGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHH---HTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cccccccccccCHHHHHHHHHH---cCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 432110 0 01222222222 2468999999999999999999986553
No 91
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.75 E-value=8.3e-19 Score=185.84 Aligned_cols=154 Identities=19% Similarity=0.220 Sum_probs=110.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+.++|+++|.+|+|||||+|+|++.. +.+ +++.|+||+++. ...+.+.|
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~---------~a~-----------------vs~~~gTT~d~~-----~~~i~~~g 290 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNED---------RAI-----------------VTDIPGTTRDVI-----SEEIVIRG 290 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHT---------BCC-----------------CCCSSCCSSCSC-----CEEEEETT
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCC---------CCc-----------------cCCCCCeeeeeE-----EEEEecCC
Confidence 44899999999999999999999752 111 345577887752 23334443
Q ss_pred CccccccceeeEEEEecCChh-hH--------HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEE
Q 039945 184 FENCRMKLLRHVSFVDCPGHD-IL--------MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQ 254 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~-~~--------~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvvi 254 (531)
..+.||||||++ ++ +..+...+..+|++|+|+|++.+ ...+..+.+.. +..+|+|+|+
T Consensus 291 ---------~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~-~s~~~~~il~~---l~~~piivV~ 357 (482)
T 1xzp_A 291 ---------ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP-LDEEDRKILER---IKNKRYLVVI 357 (482)
T ss_dssp ---------EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSC-CCHHHHHHHHH---HTTSSEEEEE
T ss_pred ---------eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCC-CCHHHHHHHHH---hcCCCEEEEE
Confidence 789999999987 53 24566778999999999999876 34444443333 3446799999
Q ss_pred eccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 255 NKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 255 NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
||+|+.+... .+++.+++ ....+++++||++|+|+++|+++|.+.+.
T Consensus 358 NK~DL~~~~~----~~~~~~~~----~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 358 NKVDVVEKIN----EEEIKNKL----GTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EECSSCCCCC----HHHHHHHH----TCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred ECcccccccC----HHHHHHHh----cCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999975311 12333333 23468999999999999999999987553
No 92
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.75 E-value=1.7e-17 Score=157.43 Aligned_cols=168 Identities=14% Similarity=0.185 Sum_probs=104.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+... |+...+....+ .+.+. . ...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~---~~~~~--t~~~~~~~~~~-~~~~~-----~---------~~~------ 76 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN---PKFIT--TVGIDFREKRV-VYNAQ-----G---------PNG------ 76 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCC---CEEEE--EEEEEEEEEEE-EEEC-------------------------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCC---cCCCC--ceeEEEEEEEE-EECCc-----c---------ccc------
Confidence 44589999999999999999999975321 11111 22211111000 00000 0 000
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHHc------CCceEEEEEe
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEIM------RLQHIIILQN 255 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~~------~~~~iIvviN 255 (531)
.........+.||||||+++|...+...+..+|++|+|+|++... ..+.+ .++..+ ...|+++|+|
T Consensus 77 ---~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~----s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 77 ---SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ----SFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp -----CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHH----HHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred ---cccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHH----HHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 000111268999999999999888888899999999999997641 22221 233322 2367999999
Q ss_pred ccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 256 KVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 256 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
|+|+.+.... ..+++.++.+. ...+++++||++|.|+++|+++|.+.+
T Consensus 150 K~Dl~~~~~v--~~~~~~~~~~~---~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 150 KADLPDQREV--NERQARELADK---YGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp CTTCGGGCCS--CHHHHHHHHHH---TTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCcccccccc--CHHHHHHHHHH---CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999753211 11223333322 246899999999999999999987654
No 93
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.75 E-value=2.2e-18 Score=157.93 Aligned_cols=154 Identities=15% Similarity=0.217 Sum_probs=98.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+..+|+++|.+|+|||||+|+|++.... + +.+.|++++++.. ..+.+.+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~---------~-----------------~~~~~~~t~~~~~-----~~~~~~~ 51 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAA---------I-----------------VTDIAGTTRDVLR-----EHIHIDG 51 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCS---------C-----------------CCSSTTCCCSCEE-----EEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc---------e-----------------eeCCCCceeceee-----EEEEECC
Confidence 4578999999999999999999975310 0 1122344433211 1112222
Q ss_pred CccccccceeeEEEEecCChhhH--------HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEE
Q 039945 184 FENCRMKLLRHVSFVDCPGHDIL--------MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIIL 253 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~--------~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvv 253 (531)
..+.+|||||++++ ...+...+..+|++++|+|++.. ...+...++..+.... ..|+|+|
T Consensus 52 ---------~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~-~s~~~~~~~~~~~~~~~~~~p~ilv 121 (172)
T 2gj8_A 52 ---------MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTT-DAVDPAEIWPEFIARLPAKLPITVV 121 (172)
T ss_dssp ---------EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTC-CCCSHHHHCHHHHHHSCTTCCEEEE
T ss_pred ---------eEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHhcccCCCEEEE
Confidence 57899999997532 12233457899999999999876 3333344443333321 2569999
Q ss_pred EeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 254 QNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 254 iNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+||+|+.+... ++. . ....+++++||++|.|+++|+++|.+.+..
T Consensus 122 ~NK~Dl~~~~~---------~~~-~--~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 122 RNKADITGETL---------GMS-E--VNGHALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp EECHHHHCCCC---------EEE-E--ETTEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred EECccCCcchh---------hhh-h--ccCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 99999853210 000 0 134689999999999999999999877653
No 94
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.75 E-value=4.8e-18 Score=156.84 Aligned_cols=162 Identities=18% Similarity=0.184 Sum_probs=104.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++.... ......++.+.....+ .+.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~-----------------------------~~~ 55 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK---DDSNHTIGVEFGSKII-----------------------------NVG 55 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC---TTCCCCSEEEEEEEEE-----------------------------EET
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCccceEEEEEEE-----------------------------EEC
Confidence 34589999999999999999999864321 1111122221111000 001
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcc-hHHHHHHHHHc--CCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ-TSEHLAAVEIM--RLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~q-t~e~l~~~~~~--~~~~iIvviNK~Dl 259 (531)
+ ....+.||||||+++|.......+..+|++++|+|++... ..+ ...++..+... ...|+++|+||+|+
T Consensus 56 ~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 127 (186)
T 2bme_A 56 G-------KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE-TYNALTNWLTDARMLASQNIVIILCGNKKDL 127 (186)
T ss_dssp T-------EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred C-------EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 0 1157999999999999888888899999999999998641 211 12233333322 23579999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
...... ..++..++... ...+++++||++|.|+++++++|.+.+.
T Consensus 128 ~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 128 DADREV--TFLEASRFAQE---NELMFLETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp GGGCCS--CHHHHHHHHHH---TTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccc--CHHHHHHHHHH---cCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 643211 11222233322 3468999999999999999999876553
No 95
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=2.2e-18 Score=160.25 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=102.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+.++|+++|++|+|||||+++|++.... .+....++.+.....+ .+.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~-----------------------------~~~- 60 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFD---PELAATIGVDFKVKTI-----------------------------SVD- 60 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC---TTCCCCCSEEEEEEEE-----------------------------EET-
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC---ccCCCccceEEEEEEE-----------------------------EEC-
Confidence 3589999999999999999999865321 1111111111100000 000
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl~ 260 (531)
.....+.||||||+++|.......+..+|++|+|+|++..........++..+... ...|+++|+||+|+.
T Consensus 61 ------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 61 ------GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp ------TEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred ------CeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 11267999999999988777777889999999999997641111122233333322 235789999999995
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
..... .++..++.+. ...+++++||++|.|+++|+++|.+.+.
T Consensus 135 ~~~~~---~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 135 NREVD---RNEGLKFARK---HSMLFIEASAKTCDGVQCAFEELVEKII 177 (195)
T ss_dssp SCCSC---HHHHHHHHHH---TTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccC---HHHHHHHHHH---cCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 42211 1222233322 2468999999999999999999987664
No 96
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.75 E-value=4.4e-18 Score=153.17 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=99.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+++|++..... +....+... +. . .+.+.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~~~~~~~--~~--~--------------------------~~~~~-- 47 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD---ECDPTIEDS--YR--K--------------------------QVVID-- 47 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS---CCCTTCCEE--EE--E--------------------------EEEET--
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc---ccCCccceE--EE--E--------------------------EEEEC--
Confidence 3789999999999999999998643210 000000000 00 0 00001
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCCcc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl~~ 261 (531)
.....+.||||||+.+|.......+..+|++++|+|++..........++..+... ...|+++|+||+|+.+
T Consensus 48 -----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 48 -----GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp -----TEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred -----CEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 01256899999999887777777788999999999987541111122333333222 1356999999999875
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.....+..+++.+.+ ..+++++||++|.|+++++++|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 123 RTVESRQAQDLARSY------GIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CCSCHHHHHHHHHHH------TCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc------CCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 322122222222221 36899999999999999999998654
No 97
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.75 E-value=1.3e-18 Score=160.43 Aligned_cols=162 Identities=16% Similarity=0.142 Sum_probs=78.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|+++|++|+|||||+++|++... ..+....++.+.....+ .+.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~---~~~~~~t~~~~~~~~~~-----------------------------~~~ 53 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF---NSTFISTIGIDFKIRTI-----------------------------ELD 53 (183)
T ss_dssp SEEEEEEEECCCCC-------------------CHHHHHCEEEEEEEE-----------------------------EET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC---CCCCCCcccceeEEEEE-----------------------------EEC
Confidence 3458999999999999999999986432 11111122222111100 011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
+ ....+.||||||+++|.......+..+|++|+|+|++..........++..+... ...|+++|+||+|+.
T Consensus 54 ~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 54 G-------KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp T-------EEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred C-------EEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 0 1267999999999988777777789999999999998641111222333333332 235799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... ..+++.++.+. ...+++++||++|.|+++|+++|.+.+
T Consensus 127 ~~~~v--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 127 DKRQV--SKERGEKLALD---YGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp SCCCS--CHHHHHHHHHH---HTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred ccCcC--CHHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 53111 01222222222 136899999999999999999987655
No 98
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.74 E-value=3e-18 Score=155.03 Aligned_cols=158 Identities=16% Similarity=0.065 Sum_probs=86.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|.+|+|||||+++|++...... . +.+++++.. .+.+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~--~------------------------~~~~~~~~~--------~~~~~-- 45 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE--A------------------------EAAGHTYDR--------SIVVD-- 45 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------------------------------CEEEE--------EEEET--
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC--C------------------------CccccceEE--------EEEEC--
Confidence 47899999999999999999987532100 0 001111110 00001
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCCcc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl~~ 261 (531)
.....+.++||||++.|.......+..+|++++|+|++..........++..+... ...|+++|+||+|+.+
T Consensus 46 -----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 46 -----GEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp -----TEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred -----CEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 11267899999999988777777789999999999998641111122233333322 2357999999999975
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
..... .++...+... ...+++++||++|.|+++|+++|.+.+
T Consensus 121 ~~~~~--~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 121 SREVS--VDEGRACAVV---FDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp SCCSC--HHHHHHHHHH---TTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred ccccC--HHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 32111 1111222221 246899999999999999999997643
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=2.1e-18 Score=158.83 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=98.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
++.++|+++|++|+|||||+++|++.... ...-|+.... ..+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~-----------------------------~~~~~~ 60 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV------TTKPTIGFNV-----------------------------ETLSYK 60 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE------EECSSTTCCE-----------------------------EEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC------ccCCcCccce-----------------------------EEEEEC
Confidence 45689999999999999999999864210 0000000000 001111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH---cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI---MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~---~~~~~iIvviNK~Dl 259 (531)
...+.++||||+++|...+...+..+|++++|+|++.........+++..+.. ....|+++|+||+|+
T Consensus 61 ---------~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 61 ---------NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp ---------TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred ---------CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 26899999999988776667778999999999999865211222233322221 234679999999999
Q ss_pred ccHHHHHHHHHHHHHHHhc--ccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 260 IQENVAINQHEAIMKFIQG--TVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~--~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.+.... +++.+.+.. ......+++++||++|.|+++|+++|.+.+
T Consensus 132 ~~~~~~----~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 132 PGALSA----SEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp TTCCCH----HHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CCCCCH----HHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 754221 223333321 112345799999999999999999998654
No 100
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.74 E-value=2.3e-18 Score=155.83 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=100.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+++|++.... .+ ..-|+...+... .+.+.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~--~~~t~~~~~~~~---------------------------~~~~~- 50 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFT---KD--YKKTIGVDFLER---------------------------QIQVN- 50 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC---CC--SSCCCSSSEEEE---------------------------EEEET-
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCC---CC--CCCceEEEEEEE---------------------------EEEEC-
Confidence 4589999999999999999999864321 00 011111100000 00001
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HHcCCceEEEEEeccCCccH
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EIMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~~~~~~iIvviNK~Dl~~~ 262 (531)
.....+.||||||+++|.......+..+|++++|+|++..........++..+ ......|+++|+||+|+.+.
T Consensus 51 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 51 ------DEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124 (168)
T ss_dssp ------TEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred ------CEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcc
Confidence 01258999999999887766677778999999999998641111222233222 22234579999999999753
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
... ..+++.++.+. ...+++++||++|.|+++|+++|.+.+
T Consensus 125 ~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 125 SCI--KNEEAEGLAKR---LKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp CSS--CHHHHHHHHHH---HTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ccc--CHHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 211 01222222222 135899999999999999999987643
No 101
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.74 E-value=7.5e-18 Score=152.14 Aligned_cols=159 Identities=19% Similarity=0.149 Sum_probs=98.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+++|++.... ..... |+...+. . .+.+.+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~~--t~~~~~~--~--------------------------~~~~~~- 49 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV---EDYEP--TKADSYR--K--------------------------KVVLDG- 49 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC---SCCCT--TCCEEEE--E--------------------------EEEETT-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC---CCCCC--CcceEEE--E--------------------------EEEECC-
Confidence 489999999999999999999864311 00000 0000000 0 000110
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHH-HHHcC--CceEEEEEeccCCcc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAA-VEIMR--LQHIIILQNKVDLIQ 261 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~-~~~~~--~~~iIvviNK~Dl~~ 261 (531)
....+.||||||+++|.......+..+|++++|+|++..........++.. ..... ..|+++|+||+|+.+
T Consensus 50 ------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 50 ------EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp ------EEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred ------EEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 125799999999998888888888999999999999864111112222222 22222 367999999999975
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.... ..+++.++++. ...+++++||++|.|+++++++|.+.+
T Consensus 124 ~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 124 KRQV--SVEEAKNRADQ---WNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp GCCS--CHHHHHHHHHH---HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCcc--CHHHHHHHHHH---cCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 3211 11223333322 136899999999999999999997654
No 102
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=160.17 Aligned_cols=162 Identities=16% Similarity=0.136 Sum_probs=103.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++..... ......+.+.... .. .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~--~~-----------------------------~-- 68 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSH-DSRTTIGVEFSTR--TV-----------------------------M-- 68 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCS-SCCCCSSEEEEEE--EE-----------------------------E--
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEE--EE-----------------------------E--
Confidence 445899999999999999999998653210 0000001111000 00 0
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
.......+.||||||+++|.......+..+|++|+|+|++..........++..+... ...|+++|+||+|+.
T Consensus 69 -----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 69 -----LGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp -----ETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred -----ECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 0011267999999999888777777889999999999998641111122333333332 235799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
..... ..+++..+... ...+++++||++|.|+++|+++|.+.+
T Consensus 144 ~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 144 QAREV--PTEEARMFAEN---NGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp GGCCS--CHHHHHHHHHH---TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ccccc--CHHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 53211 11223333322 246899999999999999999987643
No 103
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.74 E-value=8.4e-19 Score=162.73 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=101.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
++.++|+++|++|+|||||+++|++.... ...-|+.... ..+.+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~-----------------------------~~~~~~ 64 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV------TTVPTVGVNL-----------------------------ETLQYK 64 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE------EECSSTTCCE-----------------------------EEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC------CcCCCCceEE-----------------------------EEEEEC
Confidence 45689999999999999999999754211 0000100000 001111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HH--cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EI--MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~--~~~~~iIvviNK~Dl 259 (531)
...+.+|||||+++|...+...+..+|++++|+|+++........+.+..+ .. ....|+++|+||+|+
T Consensus 65 ---------~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 135 (189)
T 2x77_A 65 ---------NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135 (189)
T ss_dssp ---------TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred ---------CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCC
Confidence 268999999999877665566778999999999998752112222223222 21 123679999999999
Q ss_pred ccHHHHHHHHHHHHHHHh--cccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQ--GTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~--~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.....+ +.+.+. .......+++++||++|.|+++|+++|.+.++
T Consensus 136 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 136 PDAASEAE----IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp TTCCCHHH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCHHH----HHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence 76422222 222221 11123458999999999999999999987654
No 104
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=8.6e-18 Score=177.21 Aligned_cols=161 Identities=20% Similarity=0.220 Sum_probs=106.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+|+|+|.. +.+ +.+.|++|++. ....+.+.|
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~---------~~~-----------------v~~~~gtT~d~-----~~~~i~~~g 227 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE---------RAL-----------------VSPIPGTTRDP-----VDDEVFIDG 227 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST---------TEE-----------------ECCCC-----------CCEEEEETT
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc---------ccc-----------------cCCCCCCcCCc-----eEEEEEECC
Confidence 45899999999999999999999863 111 12346666653 222333443
Q ss_pred CccccccceeeEEEEecCChhhHHH------------HHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEE
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMA------------TMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHII 251 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~------------~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iI 251 (531)
..+.+|||||++.+.. .....+..+|++++|+|++.+ ...+.......+...+ ++++
T Consensus 228 ---------~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~-~~~~~~~i~~~l~~~~-~~~i 296 (439)
T 1mky_A 228 ---------RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQG-ITRQDQRMAGLMERRG-RASV 296 (439)
T ss_dssp ---------EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTC-CCHHHHHHHHHHHHTT-CEEE
T ss_pred ---------EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCC-CCHHHHHHHHHHHHcC-CCEE
Confidence 6899999999754332 124456789999999999887 5555555556666666 5699
Q ss_pred EEEeccCCccHHH--HHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 252 ILQNKVDLIQENV--AINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 252 vviNK~Dl~~~~~--~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+|+||+|+.+... .++..+.+.+.+.. ....+++++||++|.|+++|++.+.+.+
T Consensus 297 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 297 VVFNKWDLVVHREKRYDEFTKLFREKLYF--IDYSPLIFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp EEEECGGGSTTGGGCHHHHHHHHHHHCGG--GTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEECccCCCchhhHHHHHHHHHHHHhcc--CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999975432 23333344443322 2457899999999999999999987544
No 105
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.74 E-value=6e-18 Score=155.91 Aligned_cols=165 Identities=15% Similarity=0.119 Sum_probs=103.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+++|++.... .+... |+...+. ..+.+.
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~---~~~~~--t~~~~~~----------------------------~~~~~~- 49 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP---GEYIP--TVFDNYS----------------------------ANVMVD- 49 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC---SSCCC--CSCCEEE----------------------------EEEEET-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC---CCcCC--cccceeE----------------------------EEEEEC-
Confidence 3489999999999999999999854211 00000 0000000 000001
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH--HHHHHHHHc-CCceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS--EHLAAVEIM-RLQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~--e~l~~~~~~-~~~~iIvviNK~Dl~ 260 (531)
.....+.||||||+++|.......+..+|++++|+|++.. ...+.. .++..+... ...|+++|+||+|+.
T Consensus 50 ------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 50 ------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSP-ASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (186)
T ss_dssp ------TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred ------CEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCCh-hhHHHHHHHHHHHHHHhCCCCCEEEEeEccccc
Confidence 1125788999999998876666778899999999999864 122221 233333332 245799999999997
Q ss_pred cHHHHHHH----------HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 261 QENVAINQ----------HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 261 ~~~~~~~~----------~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
+.....+. .++..++.+. ....+++++||++|.|+++|+++|.+.+..+
T Consensus 123 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 123 DDKDTIEKLKEKKLTPITYPQGLAMAKE--IGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TCHHHHHHHHHTTCCCCCHHHHHHHHHH--TTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHh--cCCcEEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 64322211 1122223322 1234899999999999999999998877544
No 106
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.74 E-value=3e-18 Score=167.78 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=99.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+|+|+|... ......|+|++...
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~---~~~~~pg~tv~~~~------------------------------------ 44 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ---YVANWPGVTVEKKE------------------------------------ 44 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE---EEEECTTSCCEEEE------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC---cccCCCCceEEEEE------------------------------------
Confidence 358999999999999999999998632 11111233322211
Q ss_pred CccccccceeeEEEEecCChhhHHH-----HH-HHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEe
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMA-----TM-LNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQN 255 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~-----~~-~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviN 255 (531)
+.+......+.||||||+..+.. .+ ...+ ..+|++++|+|++.. . .....+..+...+ .|+++|+|
T Consensus 45 --~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~-~~~~~~~~l~~~~-~pvilv~N 118 (258)
T 3a1s_A 45 --GVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--E-QSLYLLLEILEME-KKVILAMT 118 (258)
T ss_dssp --EEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--H-HHHHHHHHHHTTT-CCEEEEEE
T ss_pred --EEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--h-hHHHHHHHHHhcC-CCEEEEEE
Confidence 01111126899999999765421 11 1122 589999999999863 1 2223334455556 45999999
Q ss_pred ccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 256 KVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 256 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
|+|+..........+.+.+.+ +++++++||++|.|+++|+++|.+.+.
T Consensus 119 K~Dl~~~~~i~~~~~~l~~~l------g~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 119 AIDEAKKTGMKIDRYELQKHL------GIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CHHHHHHTTCCBCHHHHHHHH------CSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcCCCCccchHHHHHHHHHHc------CCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 999864322211223343333 379999999999999999999987553
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.74 E-value=4.2e-18 Score=154.77 Aligned_cols=153 Identities=21% Similarity=0.193 Sum_probs=94.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
..+|+++|++|+|||||+++|++.... .+ ..|+++.+.. ...+.+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~---~~------------------------~~~~~t~~~~-----~~~~~~~-- 48 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY---IG------------------------NWPGVTVEKK-----EGEFEYN-- 48 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS---CC-----------------------------CCCCC-----EEEEEET--
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee---cc------------------------CCCCcceeee-----EEEEEEC--
Confidence 378999999999999999999985310 00 0112121110 0011111
Q ss_pred ccccccceeeEEEEecCChhhHH------HHHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEec
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILM------ATMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK 256 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~------~~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK 256 (531)
...+.+|||||+.+|. ......+ ..+|++++|+|++.. .....++..+...+ .|+|+|.||
T Consensus 49 -------~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~~~-~p~ilv~nK 117 (165)
T 2wji_A 49 -------GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLMEMG-ANLLLALNK 117 (165)
T ss_dssp -------TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred -------CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHhcC-CCEEEEEEc
Confidence 2689999999977652 1112222 379999999998752 12223334444455 569999999
Q ss_pred cCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 257 VDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 257 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+|+..........+++.+.+ ..+++++||++|+|+++|+++|.+.+
T Consensus 118 ~Dl~~~~~~~~~~~~~~~~~------~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 118 MDLAKSLGIEIDVDKLEKIL------GVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp HHHHHHTTCCCCHHHHHHHH------TSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred hHhccccChhhHHHHHHHHh------CCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 99864321111122233222 36899999999999999999998654
No 108
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.74 E-value=8.5e-18 Score=156.02 Aligned_cols=163 Identities=13% Similarity=0.172 Sum_probs=99.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+.++|+++|.+|+|||||+++|++.... ......++.+..... +.+.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~-----------------------------~~~~ 65 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFP---DRTEATIGVDFRERA-----------------------------VDID 65 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC---SSCCCCCSCCEEEEE-----------------------------EEET
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCCcceEEEEEE-----------------------------EEEC
Confidence 45689999999999999999999864321 111111111110000 0011
Q ss_pred CCccccccceeeEEEEecCChhhHH-HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HHc--CCceEEEEEeccC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILM-ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EIM--RLQHIIILQNKVD 258 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~-~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~~--~~~~iIvviNK~D 258 (531)
+ ....+.||||||+++|. ......+..+|++|+|+|++..........++..+ ... ...|+++|+||+|
T Consensus 66 ~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (189)
T 1z06_A 66 G-------ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 138 (189)
T ss_dssp T-------EEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTT
T ss_pred C-------EEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 0 12579999999999887 55666778999999999998641111122233222 222 2356999999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCc---cchHHHHHHHHccCC
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLK---YNIDVVCEYIVKKIP 309 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g---~gi~~L~~~L~~~l~ 309 (531)
+.+.... ..++..++... ...+++++||++| .|+++++++|.+.++
T Consensus 139 l~~~~~v--~~~~~~~~~~~---~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 139 LRSAIQV--PTDLAQKFADT---HSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CGGGCCS--CHHHHHHHHHH---TTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred cccccee--CHHHHHHHHHH---cCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 9753211 11122222222 2468999999999 999999999987654
No 109
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.74 E-value=6.3e-18 Score=159.27 Aligned_cols=163 Identities=14% Similarity=0.105 Sum_probs=102.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+.++|+++|.+|+|||||+++|++.... .+ ....+.+. +. ..+.+.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~---~~-~~~t~~~~-~~----------------------------~~~~~~ 74 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP---GE-YIPTVFDN-YS----------------------------ANVMVD 74 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC---C--CCCCSEEE-EE----------------------------EEEECC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC---CC-cCCeecce-eE----------------------------EEEEEC
Confidence 45689999999999999999999853211 00 00100000 00 000011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH--HHHHHHHHc-CCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS--EHLAAVEIM-RLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~--e~l~~~~~~-~~~~iIvviNK~Dl 259 (531)
+ ....+.||||||+++|.......+..+|++++|+|++.. ...+.. .++..+... ...|+++|+||+|+
T Consensus 75 ~-------~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 146 (204)
T 4gzl_A 75 G-------KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP-ASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146 (204)
T ss_dssp --------CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHCSSCCEEEEEECHHH
T ss_pred C-------EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 1 125677999999999887777788999999999999864 222221 233333333 23579999999999
Q ss_pred ccHHHHHHH----------HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 260 IQENVAINQ----------HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 260 ~~~~~~~~~----------~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.+.....+. .++...+.+. ....+++++||++|+|+++|+++|.+.+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKE--IGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHH--TTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ccchhhhhhhhccccccccHHHHHHHHHh--cCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 765432221 1222233322 2345799999999999999999998643
No 110
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=4.4e-18 Score=158.35 Aligned_cols=161 Identities=13% Similarity=0.142 Sum_probs=104.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .. ..-|+...+....+ .+.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~--~~~t~~~~~~~~~~---------------------------~~~ 68 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFT---PA--FVSTVGIDFKVKTV---------------------------YRH 68 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTC---CC--EEEEETTTEEEEEE---------------------------EET
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCC---cc--cCCCeeeEEEEEEE---------------------------EEC
Confidence 34589999999999999999999864311 00 11111111100000 000
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
.....+.||||||++.|.......+..+|++|+|+|++..........++..+... ...|+++|+||+|+.
T Consensus 69 -------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 69 -------EKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp -------TTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred -------CEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 01167999999999999888888899999999999998641112223344444432 245799999999986
Q ss_pred cHHHH-HHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVA-INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~-~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... .+..+.+.+.+ ..+++++||++|.|+++|+++|.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 142 EERVVPTEKGQLLAEQL------GFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp GGCCSCHHHHHHHHHHH------TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHc------CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 43211 11122222221 45899999999999999999987654
No 111
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.74 E-value=2.1e-18 Score=181.73 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|++|+|||||+|+|+|... .+ +.+.|++|++.. ...+.|.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~---------~~-----------------v~~~~g~T~d~~-----~~~~~~~~-- 50 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERI---------SI-----------------VEDTPGVTRDRI-----YSSAEWLN-- 50 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEEC---------C----------------------------CE-----EEECTTCS--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---------ee-----------------ecCCCCCccceE-----EEEEEECC--
Confidence 5799999999999999999987421 11 123466666531 22334443
Q ss_pred cccccceeeEEEEecCChh--------hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEecc
Q 039945 186 NCRMKLLRHVSFVDCPGHD--------ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~--------~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~ 257 (531)
..+.||||||+. .+...+...+..||++|+|+|+..+ ......+...+++..+ +|+++|+||+
T Consensus 51 -------~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~-~~~~d~~~~~~l~~~~-~pvilv~NK~ 121 (436)
T 2hjg_A 51 -------YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG-VTAADEEVAKILYRTK-KPVVLAVNKL 121 (436)
T ss_dssp -------SCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTC-SCHHHHHHHHHHTTCC-SCEEEEEECC
T ss_pred -------ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHHcC-CCEEEEEECc
Confidence 689999999985 5556667778999999999999987 5666666666666555 5699999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
|+..... .+.++. . ....+++++||++|.|+++|+++|.+.++.
T Consensus 122 D~~~~~~------~~~~~~-~--lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 122 DNTEMRA------NIYDFY-S--LGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp CC-----------CCCSSG-G--GSSCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred cCccchh------hHHHHH-H--cCCCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 9875311 111111 1 122378999999999999999999988763
No 112
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.74 E-value=8e-18 Score=158.20 Aligned_cols=163 Identities=13% Similarity=0.130 Sum_probs=103.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+ ..-|+...+... .+.+.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~---~~--~~~t~~~~~~~~---------------------------~~~~~ 74 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS---ER--QGSTIGVDFTMK---------------------------TLEIQ 74 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC---------------CEEEE---------------------------EEEET
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCC---CC--CCCCcceEEEEE---------------------------EEEEC
Confidence 44589999999999999999999864321 11 111111111000 00011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
+ ....+.||||||+++|.......+..+|++|+|+|++..........++..+... ...|+++|+||+|+.
T Consensus 75 ~-------~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 75 G-------KRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp T-------EEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred C-------EEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 1 1258999999999999888888889999999999997641111222333333332 235799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCC-CEEEecccCccchHHHHHHHHccCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGA-PVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~-~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+.... ..+++.++.+. ... +++++||++|+|+++|+++|.+.+.
T Consensus 148 ~~~~v--~~~~~~~~~~~---~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 148 ELREV--SLAEAQSLAEH---YDILCAIETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp GGCCS--CHHHHHHHHHH---TTCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccccc--CHHHHHHHHHH---cCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 53111 11223333332 234 8999999999999999999987654
No 113
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=156.20 Aligned_cols=162 Identities=19% Similarity=0.149 Sum_probs=102.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+.++|+++|.+|+|||||+++|++..... .... |+...+. . .+.+.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~--t~~~~~~--~--------------------------~~~~~ 58 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVE---DYEP--TKADSYR--K--------------------------KVVLD 58 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCT---TCCT--TCCEEEE--E--------------------------EEEET
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCC---CCCC--ccceEEE--E--------------------------EEEEC
Confidence 456899999999999999999998643110 0000 0000000 0 00011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HHcC--CceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EIMR--LQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~~~--~~~iIvviNK~Dl 259 (531)
+ ....+.||||||+++|.......+..+|++++|+|++..........++..+ .... ..|+++|+||+|+
T Consensus 59 ~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (206)
T 2bov_A 59 G-------EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131 (206)
T ss_dssp T-------EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred C-------EEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence 1 1257999999999998888888889999999999998641111122222222 2221 3579999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.... ..+++.++... ...+++++||++|.|+++|+++|.+.+.
T Consensus 132 ~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 132 EDKRQV--SVEEAKNRAEQ---WNVNYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp GGGCCS--CHHHHHHHHHH---HTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccccc--cHHHHHHHHHH---hCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 753211 11223333322 1358999999999999999999886553
No 114
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.74 E-value=2.4e-18 Score=160.47 Aligned_cols=164 Identities=16% Similarity=0.112 Sum_probs=103.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... ..... |+...+.. . +.+.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~---~~~~~--t~~~~~~~--~--------------------------~~~~ 67 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIP---TAYVP--TVFENFSH--V--------------------------MKYK 67 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC---SSCCC--CSEEEEEE--E--------------------------EEET
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCC---CccCC--eeeeeeEE--E--------------------------EEEC
Confidence 55689999999999999999999865321 00000 11111000 0 0001
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch--HHHHHHHHH-cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT--SEHLAAVEI-MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt--~e~l~~~~~-~~~~~iIvviNK~Dl 259 (531)
+ ....+.||||||+++|.......+..+|++++|+|++.. ..... ..++..+.. ....|+++|+||+|+
T Consensus 68 ~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 139 (194)
T 3reg_A 68 N-------EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR-TSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL 139 (194)
T ss_dssp T-------EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHCTTSEEEEEEECGGG
T ss_pred C-------EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 0 125689999999999887777788999999999999864 11111 222333332 334679999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+........+++.++.+.. ...+++++||++|.|+++++++|.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 140 RKDGSDDVTKQEGDDLCQKL--GCVAYIEASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp CCTTTTCCCHHHHHHHHHHH--TCSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccCCCCcccHHHHHHHHHhc--CCCEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 75311111122223333221 2223999999999999999999987653
No 115
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.74 E-value=4.2e-18 Score=158.50 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=101.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... ..... |+...+... .+.+.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~--t~~~~~~~~---------------------------~~~~~ 66 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDL--TIGVEFGAR---------------------------MVNID 66 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCC---C-------CCSSEEEE---------------------------EEEET
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCC---CCCCC--cccceeEEE---------------------------EEEEC
Confidence 44589999999999999999999864321 00011 111100000 00011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
+ ....+.||||||+++|.......+..+|++|+|+|++..........++..+... ...|+++|+||+|+.
T Consensus 67 ~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 67 G-------KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp T-------EEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred C-------EEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 1 1257999999999988766677788999999999998641111223333333332 235799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... ..+++.++.+. ...+++++||++|.|+++++++|.+.+
T Consensus 140 ~~~~v--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 140 SRRDV--KREEGEAFARE---HGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp GGCCS--CHHHHHHHHHH---HTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred Ccccc--CHHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 53211 01222222222 246899999999999999999987654
No 116
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=152.17 Aligned_cols=160 Identities=16% Similarity=0.089 Sum_probs=92.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+++|++...... ....|.+... ..+.+.+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~--~~~~~~~~~~-------------------------------~~~~~~~ 49 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL--HEQLGEDVYE-------------------------------RTLTVDG 49 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-------CCCSSSSEEE-------------------------------EEEEETT
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc--cCccccceeE-------------------------------EEEEECC
Confidence 458999999999999999999997532100 0001111000 0001111
Q ss_pred CccccccceeeEEEEecCChhhH--HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccC
Q 039945 184 FENCRMKLLRHVSFVDCPGHDIL--MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVD 258 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~--~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~D 258 (531)
....+.+|||||+..+ .......+..+|++++|+|++.........+++..+... ...|+++|+||+|
T Consensus 50 -------~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~D 122 (175)
T 2nzj_A 50 -------EDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122 (175)
T ss_dssp -------EEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTT
T ss_pred -------EEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChh
Confidence 1257899999999873 333344567899999999997641111122333334333 1356999999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.+..... .++...+... ...+++++||++|.|+++|+++|.+.+
T Consensus 123 l~~~~~v~--~~~~~~~~~~---~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 123 LARCREVS--VEEGRACAVV---FDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp CTTTCCSC--HHHHHHHHHH---HTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hccccccC--HHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 97532110 1112222221 136899999999999999999998655
No 117
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.73 E-value=3.7e-18 Score=168.22 Aligned_cols=153 Identities=17% Similarity=0.173 Sum_probs=98.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+|+|+|.... +.+.|++|.+.. ...+.+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~---------------------------v~~~pg~tv~~~-----~~~~~~--- 47 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR---------------------------VGNWPGVTVERK-----SGLVKK--- 47 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC---------------------------CCSSSCCCCSCE-----EEECTT---
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc---------------------------ccCCCCCcEEEE-----EEEEec---
Confidence 478999999999999999999985310 011233332210 001111
Q ss_pred ccccccceeeEEEEecCChhhHH------HHHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEec
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILM------ATMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK 256 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~------~~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK 256 (531)
...+.||||||+..|. ......+ ..+|++++|+|++.. .....+...+...+. |+++|+||
T Consensus 48 -------~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~---e~~~~~~~~l~~~~~-p~ilv~NK 116 (272)
T 3b1v_A 48 -------NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL---ERNLYLTTQLIETGI-PVTIALNM 116 (272)
T ss_dssp -------CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTCS-CEEEEEEC
T ss_pred -------CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch---HhHHHHHHHHHhcCC-CEEEEEEC
Confidence 2679999999986553 1112222 469999999999752 122233344444664 59999999
Q ss_pred cCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 257 VDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 257 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+|+..........+.+.+.+ +++++++||++|.|+++|+++|.+.+.
T Consensus 117 ~Dl~~~~~~~~~~~~l~~~l------g~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 117 IDVLDGQGKKINVDKLSYHL------GVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHTTCCCCHHHHHHHH------TSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred hhhCCcCCcHHHHHHHHHHc------CCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 99864322111223343333 468999999999999999999987654
No 118
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.73 E-value=2.7e-17 Score=153.80 Aligned_cols=165 Identities=16% Similarity=0.095 Sum_probs=101.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|+++|.+|+|||||+++|++.... . . |+...+.. +.. ...+.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~----~--~--~~~~~~~~-----------------~~~--------~~~~~ 64 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSP----N--E--TLFLESTN-----------------KIY--------KDDIS 64 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCG----G--G--GGGCCCCC-----------------SCE--------EEEEC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCC----c--c--eeeecccc-----------------cee--------eeecc
Confidence 55689999999999999999999885321 1 0 11111100 000 00000
Q ss_pred CCccccccceeeEEEEecCChhhHHHHH---HHhccccCceEEEEeCCCCCCCcchHHHHHHHHH----cCCceEEEEEe
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATM---LNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI----MRLQHIIILQN 255 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~---~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~----~~~~~iIvviN 255 (531)
+ .....+.||||||+++|.... ...+..+|++|+|+|++.. ..........++.. ....|+++|.|
T Consensus 65 ~------~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~n 137 (196)
T 3llu_A 65 N------SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIH 137 (196)
T ss_dssp C------TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred C------CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 0 012679999999998876665 5677889999999999875 22222233333333 23467999999
Q ss_pred ccCCccHHHHHH----HHHH-HHHHHhcc-cCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 256 KVDLIQENVAIN----QHEA-IMKFIQGT-VADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 256 K~Dl~~~~~~~~----~~~~-i~~~l~~~-~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
|+|+.+.+.... ...+ ..++.+.. .....+++++||++ .|++++++.|.+.+
T Consensus 138 K~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 138 KVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred ccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 999987543211 1111 12222211 02356899999999 99999999987643
No 119
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.73 E-value=1.3e-17 Score=154.61 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=91.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+.++|+++|.+|+|||||+++|++.... ..... |....+. ..+.+.+
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~--t~~~~~~----------------------------~~~~~~~ 66 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFV---DEYDP--TIEDSYR----------------------------KQVVIDG 66 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC---SCCCT--TCCEEEE----------------------------EEEEETT
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCc---cccCC--ccceEEE----------------------------EEEEECC
Confidence 3489999999999999999999864321 00000 0000000 0000111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl~ 260 (531)
....+.||||||+.+|.......+..+|++++|+|++..........++..+... ...|+++|+||+|+.
T Consensus 67 -------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 67 -------ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp -------EEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred -------EEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 1256999999999988887788889999999999998641111122223333322 235799999999987
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
...... +++.++.+. ...+++++||++|.|+++++++|.+.+
T Consensus 140 ~~~~~~---~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 140 TRTVDT---KQAHELAKS---YGIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp CCCSCH---HHHHHHHHH---HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCH---HHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 522111 222222222 135899999999999999999998654
No 120
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.73 E-value=3.5e-18 Score=168.58 Aligned_cols=155 Identities=19% Similarity=0.213 Sum_probs=101.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+|+|+|... ......++|.+.... .+.+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~---~~~~~~~~t~~~~~~-----------------------------~~~~~-- 48 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ---HVGNWPGVTVEKKEG-----------------------------IMEYR-- 48 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE---EEEECTTSSCEEEEE-----------------------------EEEET--
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc---ccCCCCCeEEEeeEE-----------------------------EEEEC--
Confidence 47999999999999999999998632 111222333222110 11112
Q ss_pred ccccccceeeEEEEecCChhhHHH--------HHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEec
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMA--------TMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK 256 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~--------~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK 256 (531)
...+.||||||+.+|.. ........+|++++|+|++.. .+....+..+...+..|+++|+||
T Consensus 49 -------~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~~~~p~ilv~NK 118 (271)
T 3k53_A 49 -------EKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEMEVKNIILVLNK 118 (271)
T ss_dssp -------TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTTCCSEEEEEEC
T ss_pred -------CceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhcCCCCEEEEEEC
Confidence 26799999999765422 112223679999999999863 223333444455663569999999
Q ss_pred cCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 257 VDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 257 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+|+..........+.+.+.+ ..+++++||++|.|+++|+++|.+.+.
T Consensus 119 ~Dl~~~~~~~~~~~~l~~~l------g~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 119 FDLLKKKGAKIDIKKMRKEL------GVPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp HHHHHHHTCCCCHHHHHHHH------SSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred hhcCcccccHHHHHHHHHHc------CCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 99865332222234444443 478999999999999999999986553
No 121
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.73 E-value=4.6e-18 Score=159.67 Aligned_cols=162 Identities=17% Similarity=0.159 Sum_probs=100.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+....++.+..... +.+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~-----------------------------~~~~ 70 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK---QDSNHTIGVEFGSRV-----------------------------VNVG 70 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC---------------CCEEEEE-----------------------------EEET
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC---ccCCCcccceeEEEE-----------------------------EEEC
Confidence 44589999999999999999999965321 111111111110000 0001
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
+ ....+.||||||+++|.......+..+|++|+|+|++..........++..+... ...|+++|+||+|+.
T Consensus 71 ~-------~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 71 G-------KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp T-------EEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred C-------eeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 0 1258999999999887766667788999999999998641111122333333322 235799999999996
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... ..++..++.+. ...+++++||++|.|+++++++|.+.+
T Consensus 144 ~~~~v--~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 144 PEREV--TFLEASRFAQE---NELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp GGCCS--CHHHHHHHHHH---TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ccccc--CHHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 43211 11222233322 346899999999999999999987654
No 122
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.73 E-value=4.8e-18 Score=159.95 Aligned_cols=163 Identities=15% Similarity=0.187 Sum_probs=103.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++.... .+....++.+..... +.+.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~-----------------------------~~~~ 53 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYT---NDYISTIGVDFKIKT-----------------------------VELD 53 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCC---TTCCCSSCCCEEEEE-----------------------------EEET
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCcccceeEEEE-----------------------------EEEC
Confidence 34589999999999999999999865321 111111111111000 0111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
+ ....+.||||||+++|.......+..+|++|+|+|++..........++..+... ...|+++|+||+|+.
T Consensus 54 ~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 54 G-------KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp T-------EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred C-------EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 1 1257999999999988776777789999999999998641111122233333332 235789999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+.... ..++..++... ...+++++||++|.|+++|+++|.+.+.
T Consensus 127 ~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 127 DKRVV--EYDVAKEFADA---NKMPFLETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp TTCCS--CHHHHHHHHHH---TTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccc--CHHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 53211 11122222222 2468999999999999999999876553
No 123
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.73 E-value=3.7e-18 Score=156.93 Aligned_cols=164 Identities=12% Similarity=0.073 Sum_probs=98.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++... ..+ ..-|+...+ ...+.+.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~---~~~--~~~t~~~~~----------------------------~~~~~~~ 52 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTF---PTD--YVPTVFDNF----------------------------SANVVVN 52 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCC---C------------C----------------------------BCCCC--
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC---CCC--CCCeeeeeE----------------------------EEEEEEC
Confidence 3458999999999999999999985421 000 000110000 0011111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH--HHHHHHHHc-CCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS--EHLAAVEIM-RLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~--e~l~~~~~~-~~~~iIvviNK~Dl 259 (531)
+ ....+.||||||+++|.......+..+|++++|+|++.. ...+.. .++..+... ...|+++|+||+|+
T Consensus 53 ~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 124 (182)
T 3bwd_D 53 G-------ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 124 (182)
T ss_dssp ------------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred C-------EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 1 114678999999998877777778899999999999764 111111 233333332 23579999999998
Q ss_pred ccHHHHHH--------HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAIN--------QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~--------~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+...... ..++..++.+.. ...+++++||++|.|+++|+++|.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 125 RDDKQFFIDHPGAVPITTVQGEELKKLI--GAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HTCHHHHHHC--CCCCCHHHHHHHHHHH--TCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred hcCcccccccccCCCCCHHHHHHHHHHc--CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 76433200 112223332221 2348999999999999999999987654
No 124
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.72 E-value=2.5e-18 Score=179.17 Aligned_cols=159 Identities=20% Similarity=0.248 Sum_probs=109.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+|+|++.... ..+...++|++..+..+ ++.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~--~~~~~~gtT~d~~~~~~-----------------------------~~~ 80 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVS--IVSDYAGTTTDPVYKSM-----------------------------ELH 80 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEEE-----------------------------EET
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCC--ccCCCCCeeeeeEEEEE-----------------------------EEC
Confidence 44589999999999999999999875321 11223344443322111 111
Q ss_pred CCccccccceeeEEEEecCChhhH-------HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEe
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDIL-------MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQN 255 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~-------~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviN 255 (531)
+ ...+.||||||+.+| ...+...+..+|++|+|+|+ + ...++.+++..+...+. |+|+|+|
T Consensus 81 ~--------~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~-~~~~~~~~l~~l~~~~~-piIvV~N 148 (423)
T 3qq5_A 81 P--------IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--A-PTPYEDDVVNLFKEMEI-PFVVVVN 148 (423)
T ss_dssp T--------TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--S-CCHHHHHHHHHHHHTTC-CEEEECC
T ss_pred C--------CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--C-ChHHHHHHHHHHHhcCC-CEEEEEe
Confidence 1 137999999998765 34566778899999999999 4 67778888888888875 5999999
Q ss_pred ccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 256 KVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 256 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
|+|+.+.... +..+.+.. ....+++++||++|.|+++|+++|.+.++.+
T Consensus 149 K~Dl~~~~~~-----~~~~~l~~--~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 149 KIDVLGEKAE-----ELKGLYES--RYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCTTTTCCCT-----HHHHHSSC--CTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred CcCCCCccHH-----HHHHHHHH--HcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 9999864322 11222221 2246899999999999999999999888654
No 125
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.72 E-value=4.4e-18 Score=161.70 Aligned_cols=164 Identities=14% Similarity=0.121 Sum_probs=101.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+|+|++.... ..... |....+........ .
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~--t~~~~~~~~~~~~~--------------------------~ 57 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFE---KNYNA--TVGAVNHPVTFLDD--------------------------Q 57 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTT---CEEET--TTTEEEEEEEEEBT--------------------------T
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCC---CCCCC--ccceeeEEEEEEeC--------------------------C
Confidence 45689999999999999999999865321 00000 00000000000000 0
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch-HHHHHHHHHc-C-CceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT-SEHLAAVEIM-R-LQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~~~~-~-~~~iIvviNK~Dl 259 (531)
.....+.||||||++++.......+..+|++|+|+|++.+ ...+. ..++..+... . ..|+++|+||+|+
T Consensus 58 -------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (218)
T 4djt_A 58 -------GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSR-ITCQNLARWVKEFQAVVGNEAPIVVCANKIDI 129 (218)
T ss_dssp -------SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHCSSSCEEEEEECTTC
T ss_pred -------CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 0015799999999988766666667889999999999865 22222 2232333322 1 2579999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
.+.... ..+.+..+.. ....+++++||++|.|+++++++|.+.+..
T Consensus 130 ~~~~~~--~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 130 KNRQKI--SKKLVMEVLK---GKNYEYFEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp C----C--CHHHHHHHTT---TCCCEEEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred cccccc--CHHHHHHHHH---HcCCcEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 754221 1122333332 245789999999999999999999876543
No 126
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.72 E-value=4.8e-18 Score=172.27 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=100.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
++.++|+++|++|+|||||+++|++.... . ..-|+...+.. +.+.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~---~---~~pT~~~~~~~-----------------------------~~~~ 207 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIV---T---TIPTIGFNVET-----------------------------VEYK 207 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCE---E---EEEETTEEEEE-----------------------------EEET
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCC---C---cccccceEEEE-----------------------------EecC
Confidence 45689999999999999999999865321 0 00122211110 0111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHHc--CCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEIM--RLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~~--~~~~iIvviNK~Dl 259 (531)
...+.||||||+++|.......+..+|++|+|+|++.........+.+ .++... ...|+|+|+||+|+
T Consensus 208 ---------~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl 278 (329)
T 3o47_A 208 ---------NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278 (329)
T ss_dssp ---------TEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred ---------cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccC
Confidence 268999999999988877777889999999999998642111222222 222222 23579999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.....+..+.+... .......+++++||++|.||++|+++|.+.+.
T Consensus 279 ~~~~~~~~i~~~~~~~--~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 279 PNAMNAAEITDKLGLH--SLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp TTCCCHHHHHHHHTCT--TCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHhchh--hhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 8643322222222111 11123568999999999999999999987654
No 127
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.72 E-value=1.6e-17 Score=152.99 Aligned_cols=160 Identities=19% Similarity=0.154 Sum_probs=102.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+.++|+++|++|+|||||+++|++.... ..... |+...+. . .+.+.+
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~--t~~~~~~--~--------------------------~~~~~~ 63 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV---EDYEP--TKADSYR--K--------------------------KVVLDG 63 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC---CSCCT--TCCEEEE--E--------------------------EEEETT
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC---CcCCC--ccceEEE--E--------------------------EEEECC
Confidence 4589999999999999999999864311 00000 0000000 0 000110
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHHcC--CceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEIMR--LQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~~~--~~~iIvviNK~Dl~ 260 (531)
....+.||||||+.+|.......+..+|++++|+|++..........++. +..... ..|+++|+||+|+.
T Consensus 64 -------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 64 -------EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp -------EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred -------EEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 12579999999999888888888899999999999986411111222222 222222 35799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... ..+++.++++. ...+++++||++|.|+++|+++|.+.+
T Consensus 137 ~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 137 DKRQV--SVEEAKNRAEQ---WNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp GGCCS--CHHHHHHHHHH---TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCcc--CHHHHHHHHHH---cCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 53211 12233333332 246899999999999999999998654
No 128
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.72 E-value=2.8e-17 Score=151.32 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=99.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+.++|+++|++|+|||||+++|++.... ......+.... . .. ..+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~---~~~~~t~~~~~-~---~~--------------------------~~~~ 62 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFV---DDYDPTIEDSY-L---KH--------------------------TEID 62 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC---SCCCTTCCEEE-E---EE--------------------------EEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCCcccee-E---EE--------------------------EEeC
Confidence 45689999999999999999999854211 00001110000 0 00 0001
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HH--cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EI--MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~--~~~~~iIvviNK~Dl 259 (531)
+ ....+.||||||+++|.......+..+|++++|+|++..........++..+ .. ....|+++|+||+|+
T Consensus 63 ~-------~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 63 N-------QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp T-------EEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred C-------cEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 0 1246788999999988777777788899999999998641111122222222 21 233569999999998
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEeccc-CccchHHHHHHHHccC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQ-LKYNIDVVCEYIVKKI 308 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~-~g~gi~~L~~~L~~~l 308 (531)
.+.... ..+++.++.+.. ..+++++||+ +|.|+++++++|.+.+
T Consensus 136 ~~~~~v--~~~~~~~~~~~~---~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 136 MHLRKV--TRDQGKEMATKY---NIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp STTCCS--CHHHHHHHHHHH---TCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred hhccCc--CHHHHHHHHHHh---CCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 752111 111222222221 3789999999 9999999999987643
No 129
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.72 E-value=2.9e-17 Score=157.48 Aligned_cols=161 Identities=16% Similarity=0.107 Sum_probs=96.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|.+|+|||||+|+|++.... .... +++++.+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~---~~~~------------------------~~~t~~~~~------------- 68 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVD---VQSY------------------------SFTTKNLYV------------- 68 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEE---EECC-----------------------------CEEE-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc---cCCC------------------------CCcceeeee-------------
Confidence 489999999999999999999975321 0000 111111100
Q ss_pred ccccccceeeEEEEecCCh------hhH---HHHHHHhccccCceEEEEeCCCCCCCcchH---HHHHHHHHc-CCceEE
Q 039945 185 ENCRMKLLRHVSFVDCPGH------DIL---MATMLNGAAIMDGALLLIAANESCPQPQTS---EHLAAVEIM-RLQHII 251 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~------~~~---~~~~~~~l~~aD~~llVvDa~~~~~~~qt~---e~l~~~~~~-~~~~iI 251 (531)
.........+.||||||+ +.. ..........+|++|+|+|++.. ...... +.+..+... ...|++
T Consensus 69 -~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~l~~~~~~~pii 146 (228)
T 2qu8_A 69 -GHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQ-CGLTIKEQINLFYSIKSVFSNKSIV 146 (228)
T ss_dssp -EEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCT-TSSCHHHHHHHHHHHHTCC-CCCEE
T ss_pred -eeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccc-cCcchHHHHHHHHHHHHhhcCCcEE
Confidence 000011268999999998 321 11222335778999999999875 232222 233334333 235799
Q ss_pred EEEeccCCccHHHHH-HHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 252 ILQNKVDLIQENVAI-NQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 252 vviNK~Dl~~~~~~~-~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+|+||+|+.+..... ...+.+.++.... ....+++++||++|.|+++|+++|.+.+
T Consensus 147 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 147 IGFNKIDKCNMDSLSIDNKLLIKQILDNV-KNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp EEEECGGGCC--CCCHHHHHHHHHHHHHC-CSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCcccCCchhhHHHHHHHHHHHHHhc-CCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 999999997643221 1122333333221 1226899999999999999999988655
No 130
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.72 E-value=9.6e-18 Score=153.68 Aligned_cols=162 Identities=20% Similarity=0.268 Sum_probs=100.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++.... .+....+... +. . .+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~--~~--~--------------------------~~~~~ 53 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFV---SDYDPTIEDS--YT--K--------------------------ICSVD 53 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCC---SSCCTTCCEE--EE--E--------------------------EEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCc---cccCCCcCce--EE--E--------------------------EEEEC
Confidence 34589999999999999999999865211 0000000000 00 0 00011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHHc--CCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEIM--RLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~~--~~~~iIvviNK~Dl 259 (531)
+ ....+.||||||+++|.......+..+|++++|+|++..........++ .++... ...|+++|+||+|+
T Consensus 54 ~-------~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 54 G-------IPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp T-------EEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred C-------EEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 1 1257899999999887666666778899999999998641111122222 222222 23569999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+..... .++...+... ...+++++||++|.|+++|+++|.+.+.
T Consensus 127 ~~~~~v~--~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 127 ESQRQVP--RSEASAFGAS---HHVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp GGGCCSC--HHHHHHHHHH---TTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccccccC--HHHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 7532210 1122222221 2568999999999999999999986653
No 131
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.72 E-value=3.1e-18 Score=160.79 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=100.2
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
..+.++|+++|.+|+|||||+++|++.... ..... |....+. ..+ .+
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~--t~~~~~~--~~~--------------------------~~ 67 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFS---EGYDP--TVENTYS--KIV--------------------------TL 67 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCC---SCCCC--CSEEEEE--EEE--------------------------C-
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCC---CCCCC--ccceEEE--EEE--------------------------EE
Confidence 356699999999999999999999865321 00000 1110000 000 00
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccC
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVD 258 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~D 258 (531)
. .....+.||||||+++|.......+..+|++++|+|++..........++..+... ...|+++|+||+|
T Consensus 68 ~-------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 140 (201)
T 3oes_A 68 G-------KDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKAD 140 (201)
T ss_dssp ----------CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTT
T ss_pred C-------CEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 0 01267899999999888766677788999999999998541111112222222221 1246999999999
Q ss_pred CccHHHHH-HHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 259 LIQENVAI-NQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 259 l~~~~~~~-~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+....... ...+++.+. ...+++++||++|.|+++++++|.+.+.
T Consensus 141 l~~~~~v~~~~~~~~~~~------~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 141 LSPEREVQAVEGKKLAES------WGATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp CGGGCCSCHHHHHHHHHH------HTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CccccccCHHHHHHHHHH------hCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 97532211 112222222 1358999999999999999999987654
No 132
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.71 E-value=1.7e-17 Score=150.46 Aligned_cols=160 Identities=17% Similarity=0.061 Sum_probs=91.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|.+|+|||||+++|++..... ......+.+.... .+.+.+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~-----------------------------~~~~~~- 48 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDH---AHEMENSEDTYER-----------------------------RIMVDK- 48 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---------------CEEEE-----------------------------EEEETT-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcc---cccCCCcCCeeeE-----------------------------EEEECC-
Confidence 4789999999999999999998643210 0000011100000 000111
Q ss_pred ccccccceeeEEEEecCChhhHHHHH-HHhccccCceEEEEeCCCCCCCcchHHHHHH-HHHcC--CceEEEEEeccCCc
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATM-LNGAAIMDGALLLIAANESCPQPQTSEHLAA-VEIMR--LQHIIILQNKVDLI 260 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~-~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~-~~~~~--~~~iIvviNK~Dl~ 260 (531)
....+.+|||||++++...+ ...+..+|++++|+|++..........++.. ..... ..|+++|+||+|+.
T Consensus 49 ------~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 49 ------EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp ------EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred ------eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 12578999999998876533 3345779999999999864111122233332 23221 35799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... ..++..++.+. ...+++++||++|.|+++++++|.+.+
T Consensus 123 ~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 123 RSREV--SLEEGRHLAGT---LSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp GGCCS--CHHHHHHHHHH---TTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hcccC--CHHHHHHHHHH---cCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 43211 11222222222 246899999999999999999988654
No 133
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.9e-17 Score=154.16 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=102.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+++|++.... .+.. -|+...+. ..+.+.+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~---~~~~--~t~~~~~~----------------------------~~~~~~~ 63 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP---EEYV--PTVFDHYA----------------------------VSVTVGG 63 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---CSCC--CSSCCCEE----------------------------EEEESSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC---CCCC--CcccceeE----------------------------EEEEECC
Confidence 4589999999999999999999864210 0000 00000000 0001111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH-HHHHHHHHc-CCceEEEEEeccCCcc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS-EHLAAVEIM-RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~-e~l~~~~~~-~~~~iIvviNK~Dl~~ 261 (531)
....+.||||||+++|.......+..+|++++|+|++......... .++..+... ...|+++|+||+|+.+
T Consensus 64 -------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 64 -------KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp -------CEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred -------EEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 1257899999999988777777789999999999997641111111 233333332 3457999999999976
Q ss_pred HHHHHH----------HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 262 ENVAIN----------QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 262 ~~~~~~----------~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.....+ ..++..++.+.. ...+++++||++|+|+++|+++|.+.+
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 137 DPKTLARLNDMKEKPICVEQGQKLAKEI--GACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CHHHHHHHTTTTCCCCCHHHHHHHHHHH--TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccchhhcccccCcccCHHHHHHHHHHc--CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 432111 112233333221 234899999999999999999998654
No 134
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.71 E-value=1.6e-17 Score=157.02 Aligned_cols=166 Identities=14% Similarity=0.131 Sum_probs=102.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++.... .+.. -|+...+. ..+.+.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~---~~~~--~t~~~~~~----------------------------~~~~~~ 53 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP---TDYI--PTVFDNFS----------------------------ANVAVD 53 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCC---SSCC--CSSCCCEE----------------------------EEEECS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC---ccCC--CccceeEE----------------------------EEEEEC
Confidence 45689999999999999999999854211 0000 00000000 000111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch-H-HHHHHHHHc-CCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT-S-EHLAAVEIM-RLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt-~-e~l~~~~~~-~~~~iIvviNK~Dl 259 (531)
+ ....+.||||||+++|.......+..+|++|+|+|++... ..+. . .++..+... ...|+++|+||+|+
T Consensus 54 ~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 125 (212)
T 2j0v_A 54 G-------QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDL 125 (212)
T ss_dssp S-------CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred C-------EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEeCHHh
Confidence 1 1258999999999888766667789999999999997641 1111 1 233333332 23579999999998
Q ss_pred ccHHHHHH------HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 260 IQENVAIN------QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 260 ~~~~~~~~------~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
.+...... ..+++.++.... ...+++++||++|+|+++++++|.+.+..+
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 126 RDDKGYLADHTNVITSTQGEELRKQI--GAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HTCHHHHHTCSSCCCHHHHHHHHHHH--TCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred hhCccccccccCCCCHHHHHHHHHHc--CCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 75432100 122223332221 235899999999999999999998766543
No 135
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=154.44 Aligned_cols=163 Identities=15% Similarity=0.118 Sum_probs=89.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+... |+...+. . .+.+.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~---~~~~~--t~~~~~~--~--------------------------~~~~~ 78 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP---ESYTP--TVFERYM--V--------------------------NLQVK 78 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC----------CC--CCCEEEE--E--------------------------EEEET
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCC---CCCCC--ccceeEE--E--------------------------EEEEC
Confidence 34589999999999999999999964311 00000 1000000 0 00011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH--HHHHHHHH-cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS--EHLAAVEI-MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~--e~l~~~~~-~~~~~iIvviNK~Dl 259 (531)
+ ....+.||||||+++|.......+..+|++++|+|++... ..+.. .++..+.. ....|+++|+||+|+
T Consensus 79 ~-------~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 79 G-------KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPN-SFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp T-------EEEEEEEEEC---------------CEEEEEEEEETTCHH-HHHHHHHTHHHHHHHHCSSCCEEEEEECGGG
T ss_pred C-------EEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 1 1257999999999998877777889999999999997641 11111 12233332 233579999999999
Q ss_pred ccHHHHHHHH----------HHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 260 IQENVAINQH----------EAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 260 ~~~~~~~~~~----------~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.......+.. ++..++.+. ....+++++||++|.|+++|+++|.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 151 RKDKSLVNKLRRNGLEPVTYHRGQEMARS--VGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp GSCHHHHHHHHHTTCCCCCHHHHHHHHHH--TTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hccchhhhhhcccccCcccHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 8654332221 223333332 1234899999999999999999998654
No 136
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.71 E-value=7.7e-18 Score=160.91 Aligned_cols=164 Identities=19% Similarity=0.164 Sum_probs=101.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++.... .+... |+...+... .+.+.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~---~~~~~--t~~~~~~~~---------------------------~~~~~ 58 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFN---MDSKS--TIGVEFATR---------------------------TLEIE 58 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCC---C--------CCSEEEE---------------------------EEEET
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCC---CCCCC--cccceeEEE---------------------------EEEEC
Confidence 34589999999999999999999865321 11111 111111000 00111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~ 260 (531)
+ ....+.||||||+++|...+...+..+|++|+|+|++..........++..+... ...|+++|+||+|+.
T Consensus 59 ~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 59 G-------KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp T-------EEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred C-------EEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 1 1257999999999988766677789999999999998642111122233333332 135799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
..... ..+++.++... ...+++++||++|.|+++|+++|.+.+..
T Consensus 132 ~~~~v--~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 132 HLRAV--PTEESKTFAQE---NQLLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp GGCCS--CHHHHHHHHHH---TTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred ccccc--CHHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 53211 11222333322 24689999999999999999999877653
No 137
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=1.9e-17 Score=175.49 Aligned_cols=154 Identities=14% Similarity=0.159 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|++|+|||||+|+|+|... ++ +.+.|+++++. ....+.+.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~---------~~-----------------v~~~~g~t~~~-----~~~~~~~~~-- 70 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERI---------SI-----------------VEDTPGVTRDR-----IYSSAEWLN-- 70 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEE---------C----------------------------C-----EEEECTTCS--
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC---------cc-----------------cCCCCCcceeE-----EEEEEEECC--
Confidence 6899999999999999999987421 11 11234555542 112233433
Q ss_pred cccccceeeEEEEecCC--------hhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEecc
Q 039945 186 NCRMKLLRHVSFVDCPG--------HDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG--------~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~ 257 (531)
..+.+||||| ++.+...+...+..+|++|+|+|+..+ ......+.+.+++..+ +|+|+|+||+
T Consensus 71 -------~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~-~~~~d~~l~~~l~~~~-~pvilV~NK~ 141 (456)
T 4dcu_A 71 -------YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG-VTAADEEVAKILYRTK-KPVVLAVNKL 141 (456)
T ss_dssp -------SCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC-SCHHHHHHHHHHTTCC-SCEEEEEECC
T ss_pred -------ceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC-CChHHHHHHHHHHHcC-CCEEEEEECc
Confidence 6899999999 667777778888999999999999887 6777777777777666 5699999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
|+.... ..+.++.. .....++++||++|.|+++|++++.+.++.
T Consensus 142 D~~~~~------~~~~e~~~---lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 142 DNTEMR------ANIYDFYS---LGFGEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp ---------------CCSGG---GSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred cchhhh------hhHHHHHH---cCCCceEEeecccccchHHHHHHHHhhccc
Confidence 986431 11111111 223467899999999999999999887753
No 138
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.70 E-value=3.1e-17 Score=153.99 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=101.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|.+|+|||||+++|++.... .... |.....+. ..+.+.+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~------------------------~t~~~~~~------~~~~~~~ 70 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFP---EVYV------------------------PTVFENYI------ADIEVDG 70 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC---SSCC------------------------CSSCCCCE------EEEEETT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC---cccC------------------------CcccceEE------EEEEECC
Confidence 4589999999999999999999864321 0000 00000000 0001111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch--HHHHHHHHHc-CCceEEEEEeccCCc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT--SEHLAAVEIM-RLQHIIILQNKVDLI 260 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt--~e~l~~~~~~-~~~~iIvviNK~Dl~ 260 (531)
....+.||||||+++|.......+..+|++++|+|++.. ...+. ..++..+... ...|+++|+||+|+.
T Consensus 71 -------~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 2gco_A 71 -------KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP-DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142 (201)
T ss_dssp -------EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT
T ss_pred -------EEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh
Confidence 125799999999998877777778999999999999763 11111 2233334333 235699999999998
Q ss_pred cHHHHHHH----------HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 261 QENVAINQ----------HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 261 ~~~~~~~~----------~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
......+. .++..++.+. ....+++++||++|.|+++|+++|.+.
T Consensus 143 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 143 QDEHTRRELAKMKQEPVRSEEGRDMANR--ISAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp TCHHHHHHHHTTTCCCCCHHHHHHHHHH--TTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCccchhhhcccccCcCCHHHHHHHHHh--CCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 64332211 1122333322 123489999999999999999998754
No 139
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.70 E-value=1.8e-17 Score=153.65 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=96.7
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 102 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 102 ~~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
+.+.++|+++|.+|+|||||+++|++.... .+... |.. .+. . .+.+
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~---~~~~~--t~~-~~~--~--------------------------~~~~ 62 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYV---QEESP--EGG-RFK--K--------------------------EIVV 62 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCC---CCCCT--TCE-EEE--E--------------------------EEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCC---CCcCC--Ccc-eEE--E--------------------------EEEE
Confidence 345689999999999999999999854311 00000 000 000 0 0011
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch-HHHHHHHHHc---CCceEEEEEecc
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT-SEHLAAVEIM---RLQHIIILQNKV 257 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~~~~---~~~~iIvviNK~ 257 (531)
.+ ....+.||||||+++|. .+..+|++++|+|++.. ...+. ..++..+... ...|+++|.||+
T Consensus 63 ~~-------~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 129 (184)
T 3ihw_A 63 DG-------QSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDE-ISFQTVYNYFLRLCSFRNASEVPMVLVGTQD 129 (184)
T ss_dssp TT-------EEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCH-HHHHHHHHHHHHHHTTSCGGGSCEEEEEECT
T ss_pred CC-------EEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 11 12578899999998775 55679999999999864 22222 2333333332 124699999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
|+..........+++.++... ....+++++||++|.|+++++++|.+.+
T Consensus 130 Dl~~~~~~~v~~~~~~~~~~~--~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 130 AISAANPRVIDDSRARKLSTD--LKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp TCBTTBCCCSCHHHHHHHHHH--TTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ccccccccccCHHHHHHHHHH--cCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 985211100111222333322 2347899999999999999999987643
No 140
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.70 E-value=1.5e-17 Score=152.46 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=93.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+.++|+++|.+|+|||||+++|++...... .-|+...+ .+ .+.+.
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~------~~t~~~~~--~~--------------------------~~~~~ 50 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVL------EKTESEQY--KK--------------------------EMLVD 50 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCC------SSCSSSEE--EE--------------------------EEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCc------CCCcceeE--EE--------------------------EEEEC
Confidence 3458999999999999999999986432100 00110000 00 00111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch-HHHHHHHHHc-----CCceEEEEEec
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT-SEHLAAVEIM-----RLQHIIILQNK 256 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~~~~-----~~~~iIvviNK 256 (531)
+ ....+.||||||++++ ..++.+|++|+|+|++... ..+. ..++..+..+ ...|+++|.||
T Consensus 51 ~-------~~~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 117 (178)
T 2iwr_A 51 G-------QTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDEN-SFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117 (178)
T ss_dssp T-------EEEEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCSSSCCCEEEEEEEC
T ss_pred C-------EEEEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 1 1257899999998762 3456799999999997641 1111 1222223322 23579999999
Q ss_pred cCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 257 VDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 257 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+|+.+........+++.++.+. ....+++++||++|.|+++++++|.+.+
T Consensus 118 ~Dl~~~~~~~v~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 118 DRISASSPRVVGDARARALXAD--MKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp TTCBTTBCCCSCHHHHHHHHHH--HSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ccccccccCcCCHHHHHHHHHh--hcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 9984211000011222222221 1246899999999999999999987654
No 141
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=3.7e-17 Score=154.22 Aligned_cols=164 Identities=15% Similarity=0.089 Sum_probs=101.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|.+|+|||||+++|++.... ..... |+...+. . .+.+.+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~--t~~~~~~--~--------------------------~~~~~~ 70 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFP---EVYVP--TVFENYV--A--------------------------DIEVDG 70 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC------------CCEEE--E--------------------------EEEETT
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCC---CcCCC--cccceEE--E--------------------------EEEECC
Confidence 3579999999999999999999865321 00000 0000000 0 000111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch-HHHHHHHHHc-CCceEEEEEeccCCcc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT-SEHLAAVEIM-RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~~~~-~~~~iIvviNK~Dl~~ 261 (531)
....+.||||||+++|.......+..+|++++|+|++........ ..++..+... ...|+++|+||+|+..
T Consensus 71 -------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 71 -------KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp -------EEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred -------EEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 125799999999988876666778899999999999763101111 2233334332 2356999999999976
Q ss_pred HHHHHHHHH----------HHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 262 ENVAINQHE----------AIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 262 ~~~~~~~~~----------~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.....+... +..++... ....+++++||++|.|+++|+++|.+.+.
T Consensus 144 ~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 144 DEHVRTELARMKQEPVRTDDGRAMAVR--IQAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHH--TTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccchhhhhhcccCCCCHHHHHHHHHh--cCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 533222111 12222221 12338999999999999999999987654
No 142
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.70 E-value=1.6e-17 Score=152.75 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=98.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC-cCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ-TVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~-~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
...++|+++|++|+|||||+++|++.. ...+.. ..+.+. . . .+.+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~---~---~--------------------------~~~~ 49 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDP--TIENTF---T---K--------------------------LITV 49 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCT--TCCEEE---E---E--------------------------EEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCC--CccccE---E---E--------------------------EEEE
Confidence 345899999999999999999998432 110000 000000 0 0 0000
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHHcC--CceEEEEEeccC
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEIMR--LQHIIILQNKVD 258 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~~~--~~~iIvviNK~D 258 (531)
.+ ....+.||||||+++|.......+..+|++++|+|++..........++ .+..... ..|+++|+||+|
T Consensus 50 ~~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 122 (181)
T 3t5g_A 50 NG-------QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122 (181)
T ss_dssp TT-------EEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTT
T ss_pred CC-------EEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 11 1257899999999888655556678899999999997631111111222 2222221 356999999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+.+.... ..+++.++.+. ...+++++||++|.|+++++++|.+.+.
T Consensus 123 l~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 123 LHMERVI--SYEEGKALAES---WNAAFLESSAKENQTAVDVFRRIILEAE 168 (181)
T ss_dssp CTTTCCS--CHHHHHHHHHH---TTCEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred chhccee--cHHHHHHHHHH---hCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 8643211 11222333322 2468999999999999999999987654
No 143
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.70 E-value=1.3e-17 Score=156.65 Aligned_cols=166 Identities=13% Similarity=0.162 Sum_probs=77.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++.... +..+ ..-|+...+. ...+.+.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--~~~t~~~~~~---------------------------~~~~~~~ 67 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSK-FLKD--YAMTSGVEVV---------------------------VAPVTIP 67 (208)
T ss_dssp EEEEEEEEC----------------------------------------------------------------CEEEECT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCc-ccCC--CCCccceEEE---------------------------EEEEEEC
Confidence 34589999999999999999999875110 0000 0011110000 0011111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc-----CCceEEEEEecc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM-----RLQHIIILQNKV 257 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~-----~~~~iIvviNK~ 257 (531)
+ . .....+.||||||+++|.......+..+|++|+|+|++..........++..+... ...|+++|+||+
T Consensus 68 ~--~---~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 142 (208)
T 2yc2_C 68 D--T---TVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKT 142 (208)
T ss_dssp T--S---SEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC
T ss_pred C--c---ccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECc
Confidence 1 0 00268999999999999888888889999999999998642112223333333332 246799999999
Q ss_pred CCcc-HHHHHHHHHHHHHHHhcccCCCCCEEEecccC-ccchHHHHHHHHccC
Q 039945 258 DLIQ-ENVAINQHEAIMKFIQGTVADGAPVVPISAQL-KYNIDVVCEYIVKKI 308 (531)
Q Consensus 258 Dl~~-~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~-g~gi~~L~~~L~~~l 308 (531)
|+.+ .... ..+++.++.+. ...+++++||++ |.|+++|+++|.+.+
T Consensus 143 Dl~~~~~~v--~~~~~~~~~~~---~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 143 DLPPQRHQV--RLDMAQDWATT---NTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp -------CC--CHHHHHHHHHH---TTCEEEECCC-------CHHHHHHHHHH
T ss_pred ccchhhccC--CHHHHHHHHHH---cCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 9975 2111 12233333332 236899999999 999999999987654
No 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.70 E-value=1.8e-16 Score=159.17 Aligned_cols=163 Identities=15% Similarity=0.094 Sum_probs=104.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|.+|+|||||+++|++.... ......+.|++..+.... +.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~--~~~~~~~~Ti~~~~~~~~-----------------------------~~-- 49 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSA--FDTRRLGATIDVEHSHLR-----------------------------FL-- 49 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCT--GGGGGCCCCCSEEEEEEE-----------------------------ET--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC--ccccCcCCccceEEEEEE-----------------------------eC--
Confidence 479999999999999999999875311 011122334433322110 00
Q ss_pred ccccccceeeEEEEecCChhhHHHH-----HHHhccccCceEEEEeCCCCCCCcchHH-HHHHHHH----cCCceEEEEE
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMAT-----MLNGAAIMDGALLLIAANESCPQPQTSE-HLAAVEI----MRLQHIIILQ 254 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~-----~~~~l~~aD~~llVvDa~~~~~~~qt~e-~l~~~~~----~~~~~iIvvi 254 (531)
....+.||||||+++|... ....+..+|++|+|+|++.. ...+... +...+.. ....|+++|+
T Consensus 50 ------~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~-~s~~~l~~~~~~l~~l~~~~~~~piilv~ 122 (307)
T 3r7w_A 50 ------GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVEST-EVLKDIEIFAKALKQLRKYSPDAKIFVLL 122 (307)
T ss_dssp ------TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCS-CHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ------CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCCh-hhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 0268999999999988443 33445789999999999875 2222221 2222222 2236799999
Q ss_pred eccCCccHHHHH----HHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 255 NKVDLIQENVAI----NQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 255 NK~Dl~~~~~~~----~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
||+|+...+... ...+++.++.+..+....+++++||++ .|+.+++..+...+
T Consensus 123 NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 123 HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred ecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 999998744333 333555555554333357999999999 78887777776544
No 145
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=2.5e-17 Score=152.40 Aligned_cols=155 Identities=21% Similarity=0.180 Sum_probs=97.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+++|++... ..+...++|.+... ..+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~---~~~~~~~~t~~~~~-----------------------------~~~~~~-- 52 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENV---YIGNWPGVTVEKKE-----------------------------GEFEYN-- 52 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCE---EEEECTTSCCEEEE-----------------------------EEEEET--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc---cccCCCCeeccceE-----------------------------EEEEeC--
Confidence 47999999999999999999998531 11111122221110 011111
Q ss_pred ccccccceeeEEEEecCChhhHH------HHHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEec
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILM------ATMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNK 256 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~------~~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK 256 (531)
...+.+|||||+.+|. ......+ ..+|++++|+|++.. .....++..+...+ .|+++|+||
T Consensus 53 -------~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~-~piilv~nK 121 (188)
T 2wjg_A 53 -------GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLMEMG-ANLLLALNK 121 (188)
T ss_dssp -------TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---HHHHHHHHHHHTTT-CCEEEEEEC
T ss_pred -------CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---HHHHHHHHHHHhcC-CCEEEEEEh
Confidence 2689999999987652 1111222 358999999998742 22333444444445 569999999
Q ss_pred cCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 257 VDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 257 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+|+..........+++.+.+ ..+++++||++|.|+++|+++|.+.+..
T Consensus 122 ~Dl~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 122 MDLAKSLGIEIDVDKLEKIL------GVKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp HHHHHHTTCCCCHHHHHHHH------TSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred hhccccccchHHHHHHHHHh------CCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 99864322111222333322 3689999999999999999999877654
No 146
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.69 E-value=1.2e-16 Score=157.78 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=57.0
Q ss_pred cCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccc
Q 039945 217 MDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYN 296 (531)
Q Consensus 217 aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~g 296 (531)
+|+++++++.+.........+.+..+.. + .|+|+|+||+|+..........+.+.+.+.. ..++++++||++++|
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~-~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~---~~i~v~~~sa~~~~~ 190 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE-K-VNIIPLIAKADTLTPEECQQFKKQIMKEIQE---HKIKIYEFPETDDEE 190 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT-T-SCEEEEESSGGGSCHHHHHHHHHHHHHHHHH---TTCCCCCC-------
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc-c-CCEEEEEeccCCCCHHHHHHHHHHHHHHHHH---cCCeEEcCCCCCChh
Confidence 7789999977653256666666665554 4 5799999999998877766666677776653 456789999999999
Q ss_pred hHHHHHHHHccCC
Q 039945 297 IDVVCEYIVKKIP 309 (531)
Q Consensus 297 i~~L~~~L~~~l~ 309 (531)
+++|+++|.+.+|
T Consensus 191 ~~~l~~~l~~~~p 203 (274)
T 3t5d_A 191 ENKLVKKIKDRLP 203 (274)
T ss_dssp ----CHHHHHTCS
T ss_pred HHHHHHHHhcCCC
Confidence 9999999997765
No 147
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.69 E-value=8.4e-17 Score=153.12 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=100.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
..+|+++|.+++|||||+++++... |..+.. -|+...+....+ .+.+
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~---f~~~~~--~Tig~d~~~k~~---------------------------~~~~- 59 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS---FDNTYQ--ATIGIDFLSKTM---------------------------YLED- 59 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC---CC------------CEEEEE---------------------------ECSS-
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC---CCCCcC--CccceEEEEEEE---------------------------Eecc-
Confidence 3799999999999999999998432 111111 122221111000 0110
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH-c-CCceEEEEEeccCCccH
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI-M-RLQHIIILQNKVDLIQE 262 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~-~-~~~~iIvviNK~Dl~~~ 262 (531)
....+.||||+|.++|.......++.+|++++|+|.+..........++..+.. . ...|+|+|.||+|+.+.
T Consensus 60 ------~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 60 ------RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133 (216)
T ss_dssp ------CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred ------eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc
Confidence 126789999999998877777778999999999999764211222333333322 2 23579999999999753
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
..+ ..++..++.+. .+.+++++||++|.||+++++.|.+.++.
T Consensus 134 r~V--~~~e~~~~a~~---~~~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 134 RQV--SIEEGERKAKE---LNVMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp CCS--CHHHHHHHHHH---HTCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred Ccc--cHHHHhhHHHH---hCCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 211 11222233322 14689999999999999999999877753
No 148
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=3.9e-17 Score=175.01 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=104.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++..... ..-|+...+. .+.+.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~------~~~T~~~~~~-----------------------------~~~~~ 364 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT------TIPTVGFNVE-----------------------------TVTYK 364 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC------CCCCSSEEEE-----------------------------EEESS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC------cCCccceeEE-----------------------------EEEeC
Confidence 456899999999999999999998753210 0001111110 11111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHH--cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEI--MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~--~~~~~iIvviNK~Dl 259 (531)
...+.||||||+++|.......+..+|++|+|+|++...........+ .++.. ....|+|+|+||+|+
T Consensus 365 ---------~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 435 (497)
T 3lvq_E 365 ---------NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 435 (497)
T ss_dssp ---------SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSS
T ss_pred ---------CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCC
Confidence 268999999999988877778889999999999998642111112222 22221 123679999999999
Q ss_pred ccHHHHHHHHHHHHHHHhc--ccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 260 IQENVAINQHEAIMKFIQG--TVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~--~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
.+..... ++.+.+.. ......+++++||++|+||++|+++|.+.+..
T Consensus 436 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 436 PDAMKPH----EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp SSCCCHH----HHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred CcCCCHH----HHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7542222 22222221 11234579999999999999999999987653
No 149
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=6.1e-17 Score=151.19 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=97.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+....+... +. . .+.+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~---~~~~~t~~~~--~~--~--------------------------~~~~~ 72 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFI---WEYDPTLEST--YR--H--------------------------QATID 72 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCC---SCCCTTCCEE--EE--E--------------------------EEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC---cccCCCCCce--EE--E--------------------------EEEEC
Confidence 45689999999999999999999864321 0000000000 00 0 00001
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH---cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI---MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~---~~~~~iIvviNK~Dl 259 (531)
.....+.||||||+++ .......+..+|++++|+|++..........++..+.. ....|+++|+||+|+
T Consensus 73 -------~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 144 (196)
T 2atv_A 73 -------DEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144 (196)
T ss_dssp -------TEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred -------CEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccc
Confidence 1126799999999887 44455567889999999999863111122233333322 123569999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCcc-chHHHHHHHHccC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKY-NIDVVCEYIVKKI 308 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~-gi~~L~~~L~~~l 308 (531)
.+.... ..++..++.+. ...+++++||++|. |+++++++|.+.+
T Consensus 145 ~~~~~v--~~~~~~~~~~~---~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 145 DHSRQV--STEEGEKLATE---LACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp GGGCCS--CHHHHHHHHHH---HTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred cccccc--CHHHHHHHHHH---hCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 753111 01122222222 14689999999999 9999999987654
No 150
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.68 E-value=1.3e-16 Score=147.43 Aligned_cols=162 Identities=10% Similarity=0.097 Sum_probs=100.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+... |+...+. .. +.+.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~---~~~~~--t~~~~~~------------------~~----------~~~~ 51 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP---ENYVP--TVFENYT------------------AS----------FEID 51 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC---SSCCC--CSEEEEE------------------EE----------EECS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC---CCCCC--ccceeEE------------------EE----------EEEC
Confidence 45689999999999999999999864311 00000 1100000 00 0000
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch--HHHHHHHHH-cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT--SEHLAAVEI-MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt--~e~l~~~~~-~~~~~iIvviNK~Dl 259 (531)
.....+.||||||+++|.......+..+|++|+|+|++.. ...+. ..++..+.. ....|+++|.||+|+
T Consensus 52 -------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 123 (184)
T 1m7b_A 52 -------TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP-ETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 123 (184)
T ss_dssp -------SCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred -------CEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCH-HHHHHHHHHHHHHHHHHCCCCCEEEEEEcchh
Confidence 0126799999999998876666678999999999999764 11111 122233332 234679999999999
Q ss_pred ccHHH-HHH---------HHHHHHHHHhcccCCCCCEEEeccc-CccchHHHHHHHHcc
Q 039945 260 IQENV-AIN---------QHEAIMKFIQGTVADGAPVVPISAQ-LKYNIDVVCEYIVKK 307 (531)
Q Consensus 260 ~~~~~-~~~---------~~~~i~~~l~~~~~~~~~ii~iSa~-~g~gi~~L~~~L~~~ 307 (531)
.+... ..+ ..++..++.+.. ...+++++||+ +|.|+++|++.|.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQI--GAATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHH--TCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred hcchhhHhhhhhcccCCCCHHHHHHHHHHc--CCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 75321 100 112233333321 24689999999 699999999998754
No 151
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.68 E-value=1.7e-17 Score=158.20 Aligned_cols=159 Identities=15% Similarity=0.141 Sum_probs=100.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH-CCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~-g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (531)
...++|+++|.+|+|||||+++|+ +..... .....|.+.....
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~--~~~t~~~~~~~~~---------------------------------- 56 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLV---------------------------------- 56 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCE--EETTTTEEEEEEE----------------------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceeEEEEE----------------------------------
Confidence 456899999999999999999954 321110 0001122221110
Q ss_pred CCCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch-HHHHHHH-HHcCCceEEEEEeccCC
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT-SEHLAAV-EIMRLQHIIILQNKVDL 259 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~-~~~~~~~iIvviNK~Dl 259 (531)
.........+.||||||++.|.......+..+|++++|+|++.. ...+. ..++..+ ......|+++|+||+|+
T Consensus 57 ----~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 131 (221)
T 3gj0_A 57 ----FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR-VTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 131 (221)
T ss_dssp ----EEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCH-HHHHTHHHHHHHHHHHSTTCCEEEEEECTTS
T ss_pred ----EEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCEEEEEECCcc
Confidence 00001126899999999998876666777899999999999864 22222 2233222 33334579999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.....+ ..++... ...+++++||++|.|+++++++|.+.+.
T Consensus 132 ~~~~~~~~----~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 132 KDRKVKAK----SIVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp SSCSSCGG----GCCHHHH---HTCEEEECBGGGTBTTTHHHHHHHHHHH
T ss_pred ccccccHH----HHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 75321111 1111111 2468999999999999999999987654
No 152
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.68 E-value=6.1e-17 Score=165.95 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
..|+++|.+|+|||||+|+|+|.... +.+.+++|++. ....+.++|
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~---------------------------~~~~~~~T~d~-----~~~~i~~~g-- 225 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQK---------------------------VDTKLFTTMSP-----KRYAIPINN-- 225 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC--------------------------------------CCS-----CEEEEEETT--
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCcc---------------------------ccCCcccccCC-----EEEEEEECC--
Confidence 34999999999999999999986310 11223444432 112233333
Q ss_pred cccccceeeEEEEecCChh-----hH---HHHHHHhccccCceEEEEeCCCCC--CCcchHHHHHHHHHcC--CceEEEE
Q 039945 186 NCRMKLLRHVSFVDCPGHD-----IL---MATMLNGAAIMDGALLLIAANESC--PQPQTSEHLAAVEIMR--LQHIIIL 253 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~-----~~---~~~~~~~l~~aD~~llVvDa~~~~--~~~qt~e~l~~~~~~~--~~~iIvv 253 (531)
..+.++||||+. ++ ...+...+..+|++++|+|++.+. ...+......++..++ ..|+|+|
T Consensus 226 -------~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV 298 (364)
T 2qtf_A 226 -------RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVT 298 (364)
T ss_dssp -------EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEE
T ss_pred -------EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEE
Confidence 678999999961 11 244566789999999999997641 0111122234455443 3579999
Q ss_pred EeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCCC
Q 039945 254 QNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 254 iNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~~ 311 (531)
.||+|+.+.. .....+.+..+.........+++++||++|.|+++|+++|.+.+..+
T Consensus 299 ~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 299 LNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 9999997642 11222222222221101234689999999999999999998766543
No 153
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.68 E-value=4.9e-17 Score=152.14 Aligned_cols=164 Identities=16% Similarity=0.078 Sum_probs=98.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... +.. ...++.+... ..+.+.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~--~~~~~~~~~~-----------------------------~~~~~~ 68 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGD-SAH--EPENPEDTYE-----------------------------RRIMVD 68 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECC-GGG--TTTSCTTEEE-----------------------------EEEEET
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCC-ccC--CCCcccceEE-----------------------------EEEEEC
Confidence 45689999999999999999999764211 000 0011100000 000111
Q ss_pred CCccccccceeeEEEEecCChhhHHH-HHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHH-c--CCceEEEEEeccC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMA-TMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEI-M--RLQHIIILQNKVD 258 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~-~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~-~--~~~~iIvviNK~D 258 (531)
+ ....+.+|||||++++.. .....+..+|++|+|+|++..........++..+.. . ...|+|+|.||+|
T Consensus 69 ~-------~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 141 (195)
T 3cbq_A 69 K-------EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 141 (195)
T ss_dssp T-------EEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTT
T ss_pred C-------EEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechh
Confidence 1 125788999999877644 333446789999999999753111122233333332 1 2357999999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+.+.... ..++..++.+. ...+++++||++|.|+++++++|.+.+..
T Consensus 142 l~~~~~v--~~~~~~~~a~~---~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 142 LARSREV--SLEEGRHLAGT---LSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp CTTTCCS--CHHHHHHHHHH---TTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred ccccCCc--CHHHHHHHHHH---hCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 9753211 11222222222 23689999999999999999999876653
No 154
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.68 E-value=6.1e-17 Score=158.48 Aligned_cols=162 Identities=17% Similarity=0.119 Sum_probs=99.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCc-cccccCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPM-CYKAYGSGKEDNPLCDV 181 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~ 181 (531)
...++|+++|++|+|||||+|+|++....... ..|. +|+.. ....+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~--------------------------~~~~~~t~~~-----~~~~~~~ 68 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESK--------------------------LGSQTLTKTC-----SKSQGSW 68 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC--------------------------TTSCCCCCSC-----EEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccC--------------------------CCCCceeeee-----EEEEEEe
Confidence 34589999999999999999999986421000 0011 11111 0011122
Q ss_pred CCCccccccceeeEEEEecCChhhH-----------HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc-----
Q 039945 182 PGFENCRMKLLRHVSFVDCPGHDIL-----------MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM----- 245 (531)
Q Consensus 182 ~g~~~~~~~~~~~i~liDtPG~~~~-----------~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~----- 245 (531)
.+ ..+.||||||+.++ ...+...+..+|++|+|+|++. ...+....+..+...
T Consensus 69 ~~---------~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~ 137 (260)
T 2xtp_A 69 GN---------REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGEDA 137 (260)
T ss_dssp TT---------EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGGG
T ss_pred CC---------CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCchh
Confidence 22 68999999998653 3333446788999999999984 455555555555543
Q ss_pred CCceEEEEEe-ccCCccHHHHHHHH-----HHHHHHHhcccCC---CCCEEEecccCccchHHHHHHHHccCC
Q 039945 246 RLQHIIILQN-KVDLIQENVAINQH-----EAIMKFIQGTVAD---GAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 246 ~~~~iIvviN-K~Dl~~~~~~~~~~-----~~i~~~l~~~~~~---~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+. |.|+++| |+|+.+.. ..... +++.+.+...... ..+ +++||++|.|+++|+++|.+.++
T Consensus 138 ~~-~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 138 MG-HTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLM 207 (260)
T ss_dssp GG-GEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-cEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHH
Confidence 33 4566666 99997532 21111 1222233222111 112 88999999999999999987665
No 155
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.68 E-value=7.5e-17 Score=153.15 Aligned_cols=164 Identities=12% Similarity=0.051 Sum_probs=101.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+... |+...+. .. +.+.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~---~~~~~--t~~~~~~--~~--------------------------~~~~ 71 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP---ETYVP--TVFENYT--AC--------------------------LETE 71 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC---SSCCC--CSEEEEE--EE--------------------------EEC-
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC---CCcCC--eeeeeEE--EE--------------------------EEEC
Confidence 34589999999999999999999864311 00000 1111000 00 0001
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch--HHHHHHHHHc-CCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT--SEHLAAVEIM-RLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt--~e~l~~~~~~-~~~~iIvviNK~Dl 259 (531)
.....+.||||||+++|.......+..+|++|+|+|++.. ..... ..++..+... ...|+++|.||+|+
T Consensus 72 -------~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 143 (214)
T 3q3j_B 72 -------EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP-ETVDSALKKWRTEILDYCPSTRVLLIGCKTDL 143 (214)
T ss_dssp --------CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCT-HHHHHHHTHHHHHHHHHCTTSEEEEEEECGGG
T ss_pred -------CEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCH-HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 0126799999999998877777778999999999999864 22111 2233333332 34679999999999
Q ss_pred ccHHHHH----------HHHHHHHHHHhcccCCCCCEEEecccCccc-hHHHHHHHHccCC
Q 039945 260 IQENVAI----------NQHEAIMKFIQGTVADGAPVVPISAQLKYN-IDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~----------~~~~~i~~~l~~~~~~~~~ii~iSa~~g~g-i~~L~~~L~~~l~ 309 (531)
.+..... ...++..++.+.. ...+++++||++|.| +++|+++|.+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 144 RTDLSTLMELSHQKQAPISYEQGCAIAKQL--GAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp GGCHHHHHHHHHTTCCCCCHHHHHHHHHHH--TCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhcccccCccCHHHHHHHHHHc--CCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 7531100 0112222333221 223899999999998 9999999987654
No 156
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.67 E-value=9.3e-19 Score=164.13 Aligned_cols=163 Identities=14% Similarity=0.175 Sum_probs=95.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+....++.+.....+ .+.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~-----------------------------~~~ 78 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYT---ESYISTIGVDFKIRTI-----------------------------ELD 78 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCC---CHHHHHHCCSEEEEEE-----------------------------EET
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC---CCcCCcccceEEEEEE-----------------------------EEC
Confidence 34589999999999999999999865321 1111122211111000 011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvviNK~Dl~ 260 (531)
+ ....+.||||||+++|.......+..+|++|+|+|+++.........++..+.... ..|+++|+||+|+.
T Consensus 79 ~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 79 G-------KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp T-------EEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred C-------EEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 0 12579999999998876666667789999999999986521112223333343331 35799999999997
Q ss_pred cHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 261 QENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+..... .++..++.. ....+++++||++|.|+++|+++|.+.+.
T Consensus 152 ~~~~v~--~~~~~~~~~---~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 152 TKKVVD--YTTAKEFAD---SLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp --CCCC--SCC-CHHHH---TTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred ccccCC--HHHHHHHHH---HcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 432110 011122222 13468999999999999999999987664
No 157
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.67 E-value=6.5e-17 Score=151.43 Aligned_cols=164 Identities=16% Similarity=0.114 Sum_probs=98.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++... ..+.. -|+...+. ..+.+.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~---~~~~~--~t~~~~~~----------------------------~~~~~~ 64 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY---PTEYI--PTAFDNFS----------------------------AVVSVD 64 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-------------CCSSEEEE----------------------------EEEEET
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC---CCCCC--CcccceeE----------------------------EEEEEC
Confidence 4568999999999999999999996531 10000 00000000 000011
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH--HHHHHHHH-cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS--EHLAAVEI-MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~--e~l~~~~~-~~~~~iIvviNK~Dl 259 (531)
+ ....+.||||||+++|.......+..+|++++|+|++.. ...+.. .++..+.. ....|+++|+||+|+
T Consensus 65 ~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 65 G-------RPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSP-SSFQNVSEKWVPEIRCHCPKAPIILVGTQSDL 136 (201)
T ss_dssp T-------EEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHCSSSCEEEEEECGGG
T ss_pred C-------EEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEEECHhh
Confidence 1 114688999999988766566677899999999999864 111111 22222332 234579999999999
Q ss_pred ccHHHHHH----------HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAIN----------QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~----------~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
........ ..++...+.... ...+++++||++|.|+++|+++|.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEI--KAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHH--TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhchhhhhhhcccccccCCHHHHHHHHHhc--CCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 75321100 112222222221 2348999999999999999999986553
No 158
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.67 E-value=5.4e-16 Score=143.33 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+|+|||||+++|++... ..+ ..|++++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~---~~~------------------------~~~~~t~~~---------------- 38 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV---RRG------------------------KRPGVTRKI---------------- 38 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC---SSS------------------------SSTTCTTSC----------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC---ccC------------------------CCCCcccee----------------
Confidence 6899999999999999999997531 111 112222111
Q ss_pred cccccceeeEEEEecCC-----------hhhHHHHHH---Hh-ccccCceEEEEeCCCCC----------CCcchHHHHH
Q 039945 186 NCRMKLLRHVSFVDCPG-----------HDILMATML---NG-AAIMDGALLLIAANESC----------PQPQTSEHLA 240 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG-----------~~~~~~~~~---~~-l~~aD~~llVvDa~~~~----------~~~qt~e~l~ 240 (531)
.... ...+.++|||| ++.|..... .. +..++++++|+|+.... ...+..+.+.
T Consensus 39 ~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (190)
T 2cxx_A 39 IEIE--WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQ 116 (190)
T ss_dssp EEEE--ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred EEEe--cCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHH
Confidence 0000 02689999999 455544333 33 55567788888875310 1112223334
Q ss_pred HHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCC----CCCEEEecccCccchHHHHHHHHccCC
Q 039945 241 AVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVAD----GAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 241 ~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~----~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+...+ .|+++|+||+|+.... .+..+++.+.+. .. ..+++++||++|+|+++++++|.+.+.
T Consensus 117 ~~~~~~-~piilv~nK~Dl~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 117 FLRELD-IPTIVAVNKLDKIKNV--QEVINFLAEKFE---VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp HHHHTT-CCEEEEEECGGGCSCH--HHHHHHHHHHHT---CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHhcC-CceEEEeehHhccCcH--HHHHHHHHHHhh---hhhhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 444445 4699999999998653 223334443332 11 135899999999999999999987654
No 159
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.67 E-value=8.2e-17 Score=149.40 Aligned_cols=160 Identities=16% Similarity=0.151 Sum_probs=95.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+... |+...+.. .+.+.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~---~~~~~--t~~~~~~~----------------------------~~~~~ 65 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI---SEYDP--NLEDTYSS----------------------------EETVD 65 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC---SCCCT--TCCEEEEE----------------------------EEEET
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC---cccCC--CccceeeE----------------------------EEEEC
Confidence 45689999999999999999999864311 00000 11000000 00000
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc-----CCceEEEEEecc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM-----RLQHIIILQNKV 257 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~-----~~~~iIvviNK~ 257 (531)
.....+.||||||+++|.. +...+..+|++++|+|++..........++..+... ...|+++|+||+
T Consensus 66 -------~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 137 (187)
T 3c5c_A 66 -------HQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKL 137 (187)
T ss_dssp -------TEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECG
T ss_pred -------CEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECc
Confidence 1125789999999887643 245678899999999998541111122233333322 345799999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecc-cCccchHHHHHHHHccC
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISA-QLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa-~~g~gi~~L~~~L~~~l 308 (531)
|+.+.... ..+++.++.+.. ..+++++|| ++|.|+++|+++|.+.+
T Consensus 138 Dl~~~~~v--~~~~~~~~~~~~---~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 138 DMAQYRQV--TKAEGVALAGRF---GCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp GGGGGCSS--CHHHHHHHHHHH---TCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred chhhcCcc--CHHHHHHHHHHc---CCcEEEEeecCccccHHHHHHHHHHHH
Confidence 99643211 112222222221 358999999 89999999999987644
No 160
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.66 E-value=6e-17 Score=164.42 Aligned_cols=158 Identities=19% Similarity=0.204 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
.+|+++|.+|||||||+|+|++... .+ .+.|.+|... ....+.+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~-----------~i----------------~~~~ftTl~p-----~~g~v~~~~-- 204 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKP-----------KI----------------ADYHFTTLVP-----NLGMVETDD-- 204 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC-----------EE----------------SSTTSSCCCC-----CEEEEECSS--
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCC-----------cc----------------ccCCccccCc-----eEEEEEeCC--
Confidence 4799999999999999999986421 00 0112222211 001111211
Q ss_pred cccccceeeEEEEecCChhh-------HHHHHHHhccccCceEEEEeCCC---CCCCcchHHHHHHHHHc----CCceEE
Q 039945 186 NCRMKLLRHVSFVDCPGHDI-------LMATMLNGAAIMDGALLLIAANE---SCPQPQTSEHLAAVEIM----RLQHII 251 (531)
Q Consensus 186 ~~~~~~~~~i~liDtPG~~~-------~~~~~~~~l~~aD~~llVvDa~~---~~~~~qt~e~l~~~~~~----~~~~iI 251 (531)
...+.|+||||+.+ +....++.+..+|++|+|+|++. .....+...++..+..+ ..+|++
T Consensus 205 ------~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~i 278 (342)
T 1lnz_A 205 ------GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 278 (342)
T ss_dssp ------SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC
T ss_pred ------CceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEE
Confidence 15799999999643 44566777788999999999975 21111222333444443 246789
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+|+||+|+.... +..+++.+.+. ...+++++||++++|+++|+++|.+.+..
T Consensus 279 lV~NK~Dl~~~~---e~~~~l~~~l~----~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 279 IVANKMDMPEAA---ENLEAFKEKLT----DDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp BEEECTTSTTHH---HHHHHHHHHCC----SCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred EEEECccCCCCH---HHHHHHHHHhh----cCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 999999998643 22334444432 22689999999999999999999887754
No 161
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.66 E-value=1.7e-16 Score=149.80 Aligned_cols=162 Identities=10% Similarity=0.088 Sum_probs=100.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... .+... |+...+. .. +.+.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~---~~~~~--t~~~~~~--~~--------------------------~~~~ 72 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP---ENYVP--TVFENYT--AS--------------------------FEID 72 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC---SSCCC--CSEEEEE--EE--------------------------EESS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC---CCcCC--ccceeEE--EE--------------------------EEEC
Confidence 44589999999999999999999864321 00000 1111000 00 0001
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcch--HHHHHHHHH-cCCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQT--SEHLAAVEI-MRLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt--~e~l~~~~~-~~~~~iIvviNK~Dl 259 (531)
+ ....+.||||||+++|.......+..+|++|+|+|++.. ..... ..++..+.. ....|+++|+||+|+
T Consensus 73 ~-------~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 144 (205)
T 1gwn_A 73 T-------QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP-ETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144 (205)
T ss_dssp S-------SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred C-------EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHCCCCCEEEEEechhh
Confidence 0 126799999999988876666677899999999999764 11111 122233332 234679999999999
Q ss_pred ccHHH-HHH---------HHHHHHHHHhcccCCCCCEEEeccc-CccchHHHHHHHHcc
Q 039945 260 IQENV-AIN---------QHEAIMKFIQGTVADGAPVVPISAQ-LKYNIDVVCEYIVKK 307 (531)
Q Consensus 260 ~~~~~-~~~---------~~~~i~~~l~~~~~~~~~ii~iSa~-~g~gi~~L~~~L~~~ 307 (531)
.+... ..+ ..++..++.+.. ...+++++||+ +|.|+++++++|.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 145 RTDVSTLVELSNHRQTPVSYDQGANMAKQI--GAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHH--TCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhcccccCCCCHHHHHHHHHHc--CCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 74321 110 112233333221 23689999999 689999999998753
No 162
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.47 E-value=7.1e-18 Score=158.64 Aligned_cols=163 Identities=14% Similarity=0.087 Sum_probs=101.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|+++|.+|+|||||+++|++.... .+ ... |+ .+. ....+.+.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---~~-~~~-t~-----------------------~~~-----~~~~~~~~ 74 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP---GE-YIP-TV-----------------------FDN-----YSANVMVD 74 (204)
Confidence 45689999999999999999999854210 00 000 00 000 00011111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH-HHHHHHHHc-CCceEEEEEeccCCc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS-EHLAAVEIM-RLQHIIILQNKVDLI 260 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~-e~l~~~~~~-~~~~iIvviNK~Dl~ 260 (531)
+ ....+.||||||+++|.......+..+|++++|+|++......... .++..+... ...|+++|+||+|+.
T Consensus 75 ~-------~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 75 G-------KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 1 1146779999999998877777889999999999998652122222 233333322 135689999999997
Q ss_pred cHHHHHH----------HHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 261 QENVAIN----------QHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 261 ~~~~~~~----------~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
+.....+ ..++..++.+. ....+++++||++|.|+++|+++|.+.
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 148 DDKDTIEKLKEKKLTPITYPQGLAMAKE--IGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 5432111 11122222221 112389999999999999999998754
No 163
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.64 E-value=8.7e-16 Score=141.97 Aligned_cols=115 Identities=12% Similarity=0.069 Sum_probs=74.8
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC-CCcchHHHHHHHH-HcCCceEEEEEeccCCccHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC-PQPQTSEHLAAVE-IMRLQHIIILQNKVDLIQENVAINQHE 270 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~-~~~qt~e~l~~~~-~~~~~~iIvviNK~Dl~~~~~~~~~~~ 270 (531)
..+.+|||||+++|.......+..+|++++|+|.+.+. .......++..+. .....|+++|.||+|+.+.........
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 135 (184)
T 2zej_A 56 LVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMS 135 (184)
T ss_dssp CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHH
T ss_pred eEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHH
Confidence 57999999999887655555567899999999987641 0111222333222 223467999999999986543322222
Q ss_pred HHHHHHhcccCCCCC----EEEecccCcc-chHHHHHHHHccCC
Q 039945 271 AIMKFIQGTVADGAP----VVPISAQLKY-NIDVVCEYIVKKIP 309 (531)
Q Consensus 271 ~i~~~l~~~~~~~~~----ii~iSa~~g~-gi~~L~~~L~~~l~ 309 (531)
+..+.+.. ....+ ++++||++|. |+++|++.|.+.++
T Consensus 136 ~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 136 KITKELLN--KRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp HHHHHTTT--CTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hcCCcchhheEEEecccCchhHHHHHHHHHHHHh
Confidence 22222221 12344 8999999996 99999999986654
No 164
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.63 E-value=1.6e-15 Score=155.41 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=98.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
...+|+++|.+|+|||||+|+|++.... .+ +.|+++++...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~---~~------------------------~~~~~t~~~~~------------ 206 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE---IA------------------------SYPFTTRGINV------------ 206 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE---EE------------------------CCTTCSSCEEE------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc---cC------------------------CCCCeeeceeE------------
Confidence 4578999999999999999999975310 00 01122221100
Q ss_pred CccccccceeeEEEEecCChhhH--------HHHHHHhc-cccCceEEEEeCCCCC-CCcch-HHHHHHH-HHcCCceEE
Q 039945 184 FENCRMKLLRHVSFVDCPGHDIL--------MATMLNGA-AIMDGALLLIAANESC-PQPQT-SEHLAAV-EIMRLQHII 251 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~--------~~~~~~~l-~~aD~~llVvDa~~~~-~~~qt-~e~l~~~-~~~~~~~iI 251 (531)
+........+.++||||+.++ .......+ ..+|.+|+|+|++... ...+. .+.+..+ ...+..|+|
T Consensus 207 --~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~pii 284 (357)
T 2e87_A 207 --GQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFL 284 (357)
T ss_dssp --EEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEE
T ss_pred --EEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEE
Confidence 000011257999999997432 12233333 5699999999987641 12222 2233333 323246799
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+|+||+|+....... ++.+++.. ...+++++||++|+|+++|+++|.+.+
T Consensus 285 lV~NK~Dl~~~~~~~----~~~~~~~~---~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 285 VVINKIDVADEENIK----RLEKFVKE---KGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp EEECCTTTCCHHHHH----HHHHHHHH---TTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEECcccCChHHHH----HHHHHHHh---cCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 999999998765432 23333322 356899999999999999999998655
No 165
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.62 E-value=1.7e-15 Score=147.25 Aligned_cols=163 Identities=16% Similarity=0.121 Sum_probs=100.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+.++|+++|++|+|||||+|+|+|........ ...+. |+.. ....+.+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~-~~~~~------------------------T~~~-----~~~~~~~~ 68 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRL-GATSV------------------------TRAC-----TTGSRRWD 68 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC----------------------------------CCSC-----EEEEEEET
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccC-CCCCc------------------------cccE-----EEEEEEEC
Confidence 456899999999999999999999864210000 00011 1110 00011122
Q ss_pred CCccccccceeeEEEEecCCh--------hhHHHHHHHhc----cccCceEEEEeCCCCCCCcchHHHHHHHHHc-C---
Q 039945 183 GFENCRMKLLRHVSFVDCPGH--------DILMATMLNGA----AIMDGALLLIAANESCPQPQTSEHLAAVEIM-R--- 246 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~--------~~~~~~~~~~l----~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~-~--- 246 (531)
...+.||||||. .++...+.+.+ ..+|++|+|+|++. ........+..+... +
T Consensus 69 ---------~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~ 137 (247)
T 3lxw_A 69 ---------KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR--FTAQDQQAVRQVRDMFGEDV 137 (247)
T ss_dssp ---------TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB--CCHHHHHHHHHHHHHHCGGG
T ss_pred ---------CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC--CCHHHHHHHHHHHHHhChhh
Confidence 278999999996 44545554444 89999999999974 445555555555442 2
Q ss_pred -CceEEEEEeccCCccHHHHHHHH-----HHHHHHHhcccCCCCCEEEecccC-----ccchHHHHHHHHccCCC
Q 039945 247 -LQHIIILQNKVDLIQENVAINQH-----EAIMKFIQGTVADGAPVVPISAQL-----KYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 247 -~~~iIvviNK~Dl~~~~~~~~~~-----~~i~~~l~~~~~~~~~ii~iSa~~-----g~gi~~L~~~L~~~l~~ 310 (531)
..|+|++.||+|+.+.. ..+.. +.+.++++.+ ...++.+++.. +.|+++|++.|.+.++.
T Consensus 138 ~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~~~---g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 138 LKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVAEC---GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp GGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHT---TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHHHc---CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 25799999999997532 22222 2345555432 23566666544 68999999999877653
No 166
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.5e-15 Score=143.88 Aligned_cols=163 Identities=17% Similarity=0.126 Sum_probs=94.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... +..+.. .++.+ +.. ..+.+.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~-~~~~~~-~~g~d--~~~---------------------------~~i~~~ 83 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDS-MDSDCE-VLGED--TYE---------------------------RTLMVD 83 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCT-TCCC----CCTT--EEE---------------------------EEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC-CCCcCC-cccee--eEE---------------------------EEEEEC
Confidence 34589999999999999999999974210 000000 00000 000 001111
Q ss_pred CCccccccceeeEEEEecCChhhHHH-HHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMA-TMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVD 258 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~-~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~D 258 (531)
| ....+.++||+|.+.... ......+.+|++|+|+|.+..........++..+... ...|+|+|.||+|
T Consensus 84 ~-------~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~D 156 (211)
T 2g3y_A 84 G-------ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 156 (211)
T ss_dssp T-------EEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTT
T ss_pred C-------eeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChH
Confidence 1 114678999999876322 2223357799999999987531111112222333322 2357999999999
Q ss_pred CccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 259 LIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+....... .++...+... ...+++++||++|+|+++|+++|.+.+
T Consensus 157 L~~~r~v~--~~e~~~~a~~---~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 157 LVRCREVS--VSEGRACAVV---FDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp CGGGCCSC--HHHHHHHHHH---HTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HhcCceEe--HHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 96421111 1111111111 136899999999999999999998655
No 167
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=6.1e-15 Score=138.90 Aligned_cols=162 Identities=14% Similarity=0.162 Sum_probs=101.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
.+..+|+++|++|+|||||+|+|+|.... .. +.+.+++++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~--------~~-----------------~~~~~G~~~~~------------- 65 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSL--------AR-----------------TSKTPGRTQLI------------- 65 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC--------------------------------------CCE-------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc--------cc-----------------ccCCCccceee-------------
Confidence 44578999999999999999999986310 00 00112222210
Q ss_pred CCccccccceeeEEEEecCChhh----------HH---HHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCce
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDI----------LM---ATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQH 249 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~----------~~---~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~ 249 (531)
+.+.. ...+.++||||+.. |. .........+|.+++|+|++.+ ......+...++...+. |
T Consensus 66 ---~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~~~~~~~~~~~-~ 139 (210)
T 1pui_A 66 ---NLFEV-ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP-LKDLDQQMIEWAVDSNI-A 139 (210)
T ss_dssp ---EEEEE-ETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHHHTTC-C
T ss_pred ---EEEEe-cCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC-CchhHHHHHHHHHHcCC-C
Confidence 00000 02578999999732 22 2222333678999999999876 34333344555666665 4
Q ss_pred EEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 250 IIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 250 iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
++++.||+|+.+........+.+..++.... ....++|+||+++.|+++|+++|.+.++
T Consensus 140 ~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 140 VLVLLTKADKLASGARKAQLNMVREAVLAFN-GDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEEEEECGGGSCHHHHHHHHHHHHHHHGGGC-SCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred eEEEEecccCCCchhHHHHHHHHHHHHHhcC-CCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 7889999999875443333455666654321 2457899999999999999999987654
No 168
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.60 E-value=1.9e-15 Score=152.64 Aligned_cols=164 Identities=15% Similarity=0.099 Sum_probs=102.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
+..++|+++|.+|+|||||+++|++.... .+ ..+ |+...+. . .+.+.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~---~~-~~~-t~~~~~~--~--------------------------~~~~~ 199 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFP---GE-YIP-TVFDNYS--A--------------------------NVMVD 199 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCC---CS-CCC-CSEEEEE--E--------------------------EEEET
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCC---cc-cCC-cccceeE--E--------------------------EEEEC
Confidence 45589999999999999999999854211 00 000 1100000 0 00001
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchH--HHHHHHHHc-CCceEEEEEeccCC
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTS--EHLAAVEIM-RLQHIIILQNKVDL 259 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~--e~l~~~~~~-~~~~iIvviNK~Dl 259 (531)
+ ....+.||||||+++|.......+..+|++++|+|++.. ...+.. .++..+... ...|+++|+||+|+
T Consensus 200 ~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 271 (332)
T 2wkq_A 200 G-------KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP-ASFHHVRAKWYPEVRHHCPNTPIILVGTKLDL 271 (332)
T ss_dssp T-------EEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHCTTSCEEEEEECHHH
T ss_pred C-------EEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhhCCCCcEEEEEEchhc
Confidence 1 114677999999998877777778999999999999864 121111 122333332 24679999999999
Q ss_pred ccHHHHHHH----------HHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQ----------HEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~----------~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.....+. .++..++.+. ....+++++||++|.|+++|+++|.+.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKE--IGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHH--TTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccchhhhccccccccccHHHHHHHHHH--cCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 754221111 1223333332 12248999999999999999999986543
No 169
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.60 E-value=6.8e-15 Score=142.03 Aligned_cols=163 Identities=14% Similarity=0.174 Sum_probs=94.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+|+|+|...... .....++|..... ..+.+.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-~~~~~~~t~~~~~-----------------------------~~~~~~ 76 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHS-GTAAKSITKKCEK-----------------------------RSSSWK 76 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------CCSCEE-----------------------------EEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCcc-CCCCCceeeeEEE-----------------------------EEEEeC
Confidence 4568999999999999999999998643100 0000112211110 011222
Q ss_pred CCccccccceeeEEEEecCChh-----------hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHH-HHcC---C
Q 039945 183 GFENCRMKLLRHVSFVDCPGHD-----------ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EIMR---L 247 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~-----------~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~~~---~ 247 (531)
+ ..+.||||||+. .+...+......+|++|+|+|++.. .....+.+..+ +.++ .
T Consensus 77 ~---------~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~--~~~~~~~l~~~~~~~~~~~~ 145 (239)
T 3lxx_A 77 E---------TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY--TEEEHKATEKILKMFGERAR 145 (239)
T ss_dssp T---------EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC--SSHHHHHHHHHHHHHHHHHG
T ss_pred C---------ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC--CHHHHHHHHHHHHHhhhhcc
Confidence 2 689999999942 3444455556788999999998753 33444444333 2222 1
Q ss_pred ceEEEEEeccCCccHHHHHHHH----HHHHHHHhcccCCCCCEEEecccCc-----cchHHHHHHHHccCC
Q 039945 248 QHIIILQNKVDLIQENVAINQH----EAIMKFIQGTVADGAPVVPISAQLK-----YNIDVVCEYIVKKIP 309 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~----~~i~~~l~~~~~~~~~ii~iSa~~g-----~gi~~L~~~L~~~l~ 309 (531)
.|+++|+||+|+.....+.+.. +.+.++++.+ ...++++++..+ .++.+|++.+.+.+.
T Consensus 146 ~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 146 SFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF---GDRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp GGEEEEEECGGGC------------CHHHHHHHHHH---SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc---CCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 4799999999997654433222 2344444432 235677776643 689999998876553
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.60 E-value=5.3e-16 Score=154.77 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=70.5
Q ss_pred eeEEEEecCChh-------------hHHHHHHHhccccCceE-EEEeCCCCCCCcchH-HHHHHHHHcCCceEEEEEecc
Q 039945 193 RHVSFVDCPGHD-------------ILMATMLNGAAIMDGAL-LLIAANESCPQPQTS-EHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 193 ~~i~liDtPG~~-------------~~~~~~~~~l~~aD~~l-lVvDa~~~~~~~qt~-e~l~~~~~~~~~~iIvviNK~ 257 (531)
..+.||||||+. .+...+...+..+|.++ +|+|++.+ ...+.. ..+..+...+ .|+++|+||+
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~i~V~NK~ 202 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-LANSDALKIAKEVDPQG-QRTIGVITKL 202 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC-GGGCHHHHHHHHHCTTC-SSEEEEEECG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc-hhhhHHHHHHHHhCCCC-CeEEEEEEcc
Confidence 589999999963 34445556677777666 79999876 444443 3444444344 5699999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
|+.+.... ..+.+...+........+++++||++|.|+++|+++|.+
T Consensus 203 Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 203 DLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp GGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred ccCCCCch--HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 99764320 111121111110011247889999999999999999875
No 171
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.59 E-value=7e-15 Score=162.94 Aligned_cols=114 Identities=12% Similarity=0.078 Sum_probs=76.3
Q ss_pred eeEEEEecCChhh---HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH-HHHHcCCceEEEEEeccCCccHH-----
Q 039945 193 RHVSFVDCPGHDI---LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA-AVEIMRLQHIIILQNKVDLIQEN----- 263 (531)
Q Consensus 193 ~~i~liDtPG~~~---~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~-~~~~~~~~~iIvviNK~Dl~~~~----- 263 (531)
..+.||||||+.+ ....+...+..+|++|+|+|++.+ ......+.+. .+...+ .|+++|+||+|+....
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~-~s~~e~~~l~~~l~~~~-~~iiiVlNK~Dl~~~~~~~~e 251 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQP-CTLGERRYLENYIKGRG-LTVFFLVNAWDQVRESLIDPD 251 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTST-TCHHHHHHHHHHTTTSC-CCEEEEEECGGGGGGGCSSTT
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCc-cchhHHHHHHHHHHhhC-CCEEEEEECcccccccccChh
Confidence 3699999999765 344556677889999999999876 4444444442 333345 4599999999997542
Q ss_pred ---HHHHHHHHH----HHHHhccc------CCCCCEEEeccc--------------CccchHHHHHHHHccC
Q 039945 264 ---VAINQHEAI----MKFIQGTV------ADGAPVVPISAQ--------------LKYNIDVVCEYIVKKI 308 (531)
Q Consensus 264 ---~~~~~~~~i----~~~l~~~~------~~~~~ii~iSa~--------------~g~gi~~L~~~L~~~l 308 (531)
..+...+.+ ...+.... ....+++++||+ +|.|+++|+++|.+.+
T Consensus 252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 222222223 22232211 123579999999 9999999988887654
No 172
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.57 E-value=1.3e-15 Score=144.53 Aligned_cols=146 Identities=19% Similarity=0.252 Sum_probs=82.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|++|+|||||+++|++..... +. ....|..+.++
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~---------~~---------------~~~~~~~~~~~------------- 52 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP---------TV---------------VSQEPLSAADY------------- 52 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCC---------BC---------------CCSSCEEETTG-------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC---------ee---------------eecCceEEEEe-------------
Confidence 455899999999999999999998753210 00 00011111111
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccc----cCceEEEEeCC-CCCCCcchHHHH-HHHHH-----cCCceEE
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAI----MDGALLLIAAN-ESCPQPQTSEHL-AAVEI-----MRLQHII 251 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~----aD~~llVvDa~-~~~~~~qt~e~l-~~~~~-----~~~~~iI 251 (531)
....+.||||||+++|.......+.. +|++|+|+|++ .........+++ .++.. ....|++
T Consensus 53 --------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 124 (218)
T 1nrj_B 53 --------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 124 (218)
T ss_dssp --------GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEE
T ss_pred --------eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEE
Confidence 11579999999998876665555554 89999999998 321222223333 22222 1235699
Q ss_pred EEEeccCCccHHHHHHHHHH----HHHHHhcccCCCCCEEEecccCccc
Q 039945 252 ILQNKVDLIQENVAINQHEA----IMKFIQGTVADGAPVVPISAQLKYN 296 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~----i~~~l~~~~~~~~~ii~iSa~~g~g 296 (531)
+|+||+|+..........+. +.++... ...+++++||++|.+
T Consensus 125 lv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 125 IACNKSELFTARPPSKIKDALESEIQKVIER---RKKSLNEVERKINEE 170 (218)
T ss_dssp EEEECTTSTTCCCHHHHHHHHHHHHHHHHHH---HHHHHHC--------
T ss_pred EEEEchHhcccCCHHHHHHHHHHHHHHHHHH---Hhccccccccccccc
Confidence 99999999864333322222 2222221 134688999999875
No 173
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.56 E-value=2.5e-15 Score=151.14 Aligned_cols=111 Identities=12% Similarity=0.105 Sum_probs=71.2
Q ss_pred eeEEEEecCChhh-------------HHHHHHHhccccCceEEEEeC-CCCCCCcch-HHHHHHHHHcCCceEEEEEecc
Q 039945 193 RHVSFVDCPGHDI-------------LMATMLNGAAIMDGALLLIAA-NESCPQPQT-SEHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 193 ~~i~liDtPG~~~-------------~~~~~~~~l~~aD~~llVvDa-~~~~~~~qt-~e~l~~~~~~~~~~iIvviNK~ 257 (531)
..+.||||||+.+ +...+...+..+|++++|+|+ +.+ ...+. ...+..+...+ .|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~-~~~~~~~~i~~~~~~~~-~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD-LANSDALQLAKEVDPEG-KRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC-STTCSHHHHHHHHCSSC-SSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc-hhhhHHHHHHHHhCCCC-CcEEEEEcCc
Confidence 5799999999643 555667778999999999997 444 34333 34555555455 5699999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecc---cC---ccchHHHHHHHHccCCC
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISA---QL---KYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa---~~---g~gi~~L~~~L~~~l~~ 310 (531)
|+.+... ...+.+...+. ....+++++|+ .+ +.|+++|++.+.+.++.
T Consensus 209 Dl~~~~~--~~~~~~~~~~~---~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 209 DLMDKGT--DAMEVLTGRVI---PLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TSSCSSC--CCHHHHTTSSS---CCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred ccCCcch--HHHHHHhCCCc---cCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 9985432 01112221111 11145555554 44 68899999998877764
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.56 E-value=5e-15 Score=160.00 Aligned_cols=169 Identities=15% Similarity=0.125 Sum_probs=99.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... . ...-|+...+... ..++++.+ .+.
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~---~--~~~~t~g~~~~~~-----------~~~~~~~v----------~~~ 92 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD---P--KESQTHGLNVVTK-----------QAPNIKGL----------END 92 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC----------------CCCEEEE-----------EGGGSGGG----------TTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC---C--CCCCccceEEEEe-----------ccccccce----------eec
Confidence 34589999999999999999999975321 0 1111111111100 00111111 110
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC-CceEEEEEeccCCcc
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR-LQHIIILQNKVDLIQ 261 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~-~~~iIvviNK~Dl~~ 261 (531)
+ ......+.++||||++.|.......+..+|++|+|+|++.. .....++..+...+ ..|+|+|+||+|+..
T Consensus 93 ~-----~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 93 D-----ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp S-----TTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred C-----CCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 0 00126899999999887766555667789999999999753 33444455555443 357999999999975
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
.... ..+++.+.+.. ...+++++||++|.|+++|+++|.+.+..
T Consensus 165 ~~~v--~~~~~~~~~~~---~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 165 SYNI--EQKKINERFPA---IENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp TCCC--CHHHHHHHCGG---GTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred cccc--CHHHHHHHHHh---cCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 3221 12334444432 24689999999999999999999876654
No 175
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.55 E-value=5.4e-15 Score=144.35 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=57.2
Q ss_pred ccCceEEEEeCCCC--CCCcchHHHHHHHHH---cCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEec
Q 039945 216 IMDGALLLIAANES--CPQPQTSEHLAAVEI---MRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPIS 290 (531)
Q Consensus 216 ~aD~~llVvDa~~~--~~~~qt~e~l~~~~~---~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iS 290 (531)
.+|++|+|+|++.. ........++..+.. ....|+++|.||+|+.+.... ++..++... ....+++++|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~~~--~~~~~~~e~S 235 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFALS--KKNLQVVETS 235 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHHHT--SSSCCEEECB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHHHh--cCCCeEEEEE
Confidence 68999999999863 211222233322221 123569999999999765333 344444432 1356899999
Q ss_pred ccCccchHHHHHHHHccC
Q 039945 291 AQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 291 a~~g~gi~~L~~~L~~~l 308 (531)
|++|.|+++|+++|.+.+
T Consensus 236 Ak~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 236 ARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999997643
No 176
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.55 E-value=3.8e-15 Score=138.82 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=90.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|.+|+|||||+++|++.... +..+. ..++.+... ..+.++|
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~-~~~~~-~~~~~~~~~-----------------------------~~~~~~~ 53 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDS-MDSDX-EVLGEDTYE-----------------------------RTLMVDG 53 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCC-C-----GGGCTTEEE-----------------------------EEEEETT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCC-cCccc-cccceeEEE-----------------------------EEEEECC
Confidence 3589999999999999999999863210 00000 000000000 0011111
Q ss_pred CccccccceeeEEEEecCChhhHHH-HHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEeccCC
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMA-TMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQNKVDL 259 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~-~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviNK~Dl 259 (531)
....+.++||+|...... ......+.+|++++|+|.+.........+++..+... ...|+|+|.||+|+
T Consensus 54 -------~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl 126 (192)
T 2cjw_A 54 -------ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126 (192)
T ss_dssp -------EEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTC
T ss_pred -------eEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhh
Confidence 114678999999754211 1122336689999999987531111112222323322 23569999999998
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
....... .++...+... ...+++++||++|.|+++|+++|.+.+
T Consensus 127 ~~~r~v~--~~~~~~~a~~---~~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 127 VRXREVS--VSEGRAXAVV---FDXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp GGGCCSC--HHHHHHHHHH---TTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hcccccc--HHHHHHHHHH---hCCceEEeccccCCCHHHHHHHHHHHH
Confidence 6421110 1111111111 246899999999999999999987654
No 177
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.53 E-value=4e-15 Score=154.12 Aligned_cols=55 Identities=22% Similarity=0.351 Sum_probs=39.3
Q ss_pred ceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHH-HHHccCC
Q 039945 248 QHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCE-YIVKKIP 309 (531)
Q Consensus 248 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~-~L~~~l~ 309 (531)
+|+|+|+||+|+.... ..+.+.+.+.. ...+++++||+.+.|+.+|++ .|.+++|
T Consensus 215 kP~i~v~NK~D~~~~~----~l~~l~~~~~~---~~~~vv~iSA~~e~~l~~L~~~~l~~~~p 270 (397)
T 1wxq_A 215 KPMVIAANKADAASDE----QIKRLVREEEK---RGYIVIPTSAAAELTLRKAAKAGFIEYIP 270 (397)
T ss_dssp SCEEEEEECGGGSCHH----HHHHHHHHHHH---TTCEEEEECHHHHHHHHSCSSSCCCCSCC
T ss_pred CCEEEEEeCccccchH----HHHHHHHHHhh---cCCcEEEEeccchhhHHHHHhhhhhhhcC
Confidence 6799999999987432 23334443321 135899999999999998877 6766665
No 178
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.52 E-value=1.7e-14 Score=135.00 Aligned_cols=160 Identities=17% Similarity=0.155 Sum_probs=97.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.++|+++|++|+|||||+++|+|.... .+....++.+... ..+.+.|
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~---~~~~~t~~~~~~~-----------------------------~~i~~~g- 51 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFN---LESKSTIGVEFAT-----------------------------RSIQVDG- 51 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC---C---CCCSCEEEE-----------------------------EEEEETT-
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC---CCCCCccceeEEE-----------------------------EEEEECC-
Confidence 489999999999999999999975321 0000000000000 0011111
Q ss_pred ccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCccH
Q 039945 185 ENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQE 262 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~~ 262 (531)
....+.|+||||++.|..........+|++++|+|............++..+... ...|+++++||+|+...
T Consensus 52 ------~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 52 ------KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp ------EEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred ------EEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 1146789999999877544444557889999999987541111112223223221 23579999999999642
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 263 NVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
... ..++.+.+... ....++.+||+++.|+++++++|.+.+
T Consensus 126 ~~~--~~~~a~~l~~~---~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 126 RAV--PTDEARAFAEK---NNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CCS--CHHHHHHHHHH---TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCc--CHHHHHHHHHH---cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111 11223333332 346889999999999999999987654
No 179
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.52 E-value=1.7e-14 Score=147.73 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=74.7
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAI 272 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i 272 (531)
..+.||||||.... ....+..+|++|+|+|+..+ ...+... ...+. .|.++|+||+|+..........+++
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~-~~~~~l~----~~~~~-~p~ivVlNK~Dl~~~~~~~~~~~~l 242 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTG-DQLQGIK----KGVLE-LADIVVVNKADGEHHKEARLAAREL 242 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTT-CTTTTCC----TTSGG-GCSEEEEECCCGGGHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCC-ccHHHHH----HhHhh-cCCEEEEECCCCcChhHHHHHHHHH
Confidence 68999999996532 22234889999999998764 2211110 00112 3679999999998765555555666
Q ss_pred HHHHhccc----CCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 273 MKFIQGTV----ADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 273 ~~~l~~~~----~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.+.... ....+++++||++|+|+++|+++|.+.++
T Consensus 243 ~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 243 SAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 66553221 12478999999999999999999987654
No 180
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.51 E-value=2.6e-14 Score=145.47 Aligned_cols=108 Identities=19% Similarity=0.050 Sum_probs=71.3
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAI 272 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i 272 (531)
..+.||||||+.++... ....+|++++|+|++.+ ...+.... ...+ .|.++|+||+|+.+........+++
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~-~~~~~l~~----~~~~-~p~ivv~NK~Dl~~~~~~~~~~~~l 219 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGG-DDLQGIKK----GLME-VADLIVINKDDGDNHTNVAIARHMY 219 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-------CCCCH----HHHH-HCSEEEECCCCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCcc-HHHHHHHH----hhhc-ccCEEEEECCCCCChHHHHHHHHHH
Confidence 68999999998765443 24789999999999765 22121111 1112 3478999999998765554444555
Q ss_pred HHHHhcccC----CCCCEEEecccCccchHHHHHHHHccCC
Q 039945 273 MKFIQGTVA----DGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 273 ~~~l~~~~~----~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.+..... ...+++++||++|+|+++|+++|.+.++
T Consensus 220 ~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 220 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 554432111 1457899999999999999999986543
No 181
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.47 E-value=2.8e-13 Score=138.20 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=66.7
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAI 272 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i 272 (531)
..+.|+||||..... ......+|++++|+|++.+ ...+ .+.. ..+.. +.++|+||+|+.+..........+
T Consensus 167 ~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~-~~~~---~i~~-~il~~-~~ivVlNK~Dl~~~~~~~~~~~~l 237 (349)
T 2www_A 167 YDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGG-DELQ---GIKR-GIIEM-ADLVAVTKSDGDLIVPARRIQAEY 237 (349)
T ss_dssp CSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-----------------CCS-CSEEEECCCSGGGHHHHHHHHHHH
T ss_pred CCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcc-hhHH---HhHH-HHHhc-CCEEEEeeecCCCchhHHHHHHHH
Confidence 689999999964221 2224689999999999865 2211 1111 12343 468899999998654433344455
Q ss_pred HHHHhccc----CCCCCEEEecccCccchHHHHHHHHccC
Q 039945 273 MKFIQGTV----ADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 273 ~~~l~~~~----~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
...++... ....+++++||++|+|+++|+++|.+.+
T Consensus 238 ~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 238 VSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 44443211 1245789999999999999999998654
No 182
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.4e-13 Score=140.67 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=75.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
....+|+|+|.||+|||||+|+|++.... +.+.|+||++.. ...+.+.
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~---------------------------v~~~pftT~~~~-----~g~~~~~ 117 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESE---------------------------AAEYEFTTLVTV-----PGVIRYK 117 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCC---------------------------GGGTCSSCCCEE-----EEEEEET
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCc---------------------------ccCCCCceeeee-----eEEEEeC
Confidence 34468999999999999999999986321 123466776632 2223333
Q ss_pred CCccccccceeeEEEEecCChh-------hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC----CceEE
Q 039945 183 GFENCRMKLLRHVSFVDCPGHD-------ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR----LQHII 251 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~-------~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~----~~~iI 251 (531)
| .++.|+||||.. .....++..++.||++++|+|++++ . .+.......+...+ .+|.+
T Consensus 118 ~---------~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p-~-~~~~~i~~EL~~~~~~l~~k~~~ 186 (376)
T 4a9a_A 118 G---------AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKP-L-HHKQIIEKELEGVGIRLNKTPPD 186 (376)
T ss_dssp T---------EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSH-H-HHHHHHHHHHHHTTEEETCCCCC
T ss_pred C---------cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCcc-H-HHHHHHHHHHHHhhHhhccCChh
Confidence 3 789999999953 2345677788999999999999864 1 11111112233332 24567
Q ss_pred EEEeccCC
Q 039945 252 ILQNKVDL 259 (531)
Q Consensus 252 vviNK~Dl 259 (531)
+++||+|.
T Consensus 187 i~~nK~d~ 194 (376)
T 4a9a_A 187 ILIKKKEK 194 (376)
T ss_dssp EEEEECSS
T ss_pred hhhhHhhh
Confidence 78888885
No 183
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=139.75 Aligned_cols=88 Identities=11% Similarity=0.142 Sum_probs=50.5
Q ss_pred CceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccc-
Q 039945 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYN- 296 (531)
Q Consensus 218 D~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~g- 296 (531)
|+++++|+...........+.+..+. ...|+|+|+||+|+.+...+....+++.+.+.. .+++++++||++|.|
T Consensus 147 ~~~vy~I~~~~~~l~~~d~~~~~~l~--~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~---~~i~~~~~Sa~~~~~~ 221 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDVAFMKAIH--NKVNIVPVIAKADTLTLKERERLKKRILDEIEE---HNIKIYHLPDAESDED 221 (361)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHTC--S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTC---C-CCSCCCC-------
T ss_pred EEEEEEEecCCCCcchhHHHHHHHhc--cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH---CCCCEEeCCCcCCCcc
Confidence 56888888643324433333333332 235699999999999876655555667776653 357899999999987
Q ss_pred --hHHHHHHHHccCCC
Q 039945 297 --IDVVCEYIVKKIPI 310 (531)
Q Consensus 297 --i~~L~~~L~~~l~~ 310 (531)
+..|.+.|.+.+|.
T Consensus 222 e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 222 EDFKEQTRLLKASIPF 237 (361)
T ss_dssp --CHHHHHHHHHTCSC
T ss_pred hhHHHHHHHHHhcCCC
Confidence 33455666655553
No 184
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.45 E-value=1.3e-13 Score=135.14 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=71.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
+.++|+++|++|+|||||+|+|++..... .. +.++++... ....+.+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~--~~------------------------~~~~~t~~~-----~~~~~~~~- 82 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR--VS------------------------PFQAEGLRP-----VMVSRTMG- 82 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSC--CC------------------------SSCC-CCCC-----EEEEEEET-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcc--cC------------------------CCCCcceee-----EEEEEEEC-
Confidence 45899999999999999999999864210 00 001111110 00011112
Q ss_pred CccccccceeeEEEEecCChhhH-------HHHHHHhc--cccCceEEEEeCCCCCCCcchHHHHHHHHH-cC---CceE
Q 039945 184 FENCRMKLLRHVSFVDCPGHDIL-------MATMLNGA--AIMDGALLLIAANESCPQPQTSEHLAAVEI-MR---LQHI 250 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~-------~~~~~~~l--~~aD~~llVvDa~~~~~~~qt~e~l~~~~~-~~---~~~i 250 (531)
...++||||||+.+| .+...+.+ ..+|++|+|+|.+...........+..+.. ++ .+|+
T Consensus 83 --------~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (262)
T 3def_A 83 --------GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKT 154 (262)
T ss_dssp --------TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGE
T ss_pred --------CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCE
Confidence 268999999998654 22222222 378999999988754233333445544443 33 2479
Q ss_pred EEEEeccCCc
Q 039945 251 IILQNKVDLI 260 (531)
Q Consensus 251 IvviNK~Dl~ 260 (531)
++|+||+|+.
T Consensus 155 ivv~nK~Dl~ 164 (262)
T 3def_A 155 LLVLTHAQFS 164 (262)
T ss_dssp EEEEECTTCC
T ss_pred EEEEeCcccC
Confidence 9999999985
No 185
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.44 E-value=4.3e-14 Score=131.09 Aligned_cols=129 Identities=21% Similarity=0.279 Sum_probs=73.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
...++|+++|.+|+|||||+++|++.... . +.. ...|.++.++ .
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~-------~--~~~---------------~~~~~~~~~~------------~ 89 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR-------P--TVV---------------SQEPLSAADY------------D 89 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------------------------CC------------C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC-------c--ccc---------------cCCCceeeee------------c
Confidence 34589999999999999999999975321 0 000 0011111111 1
Q ss_pred CCccccccceeeEEEEecCChhhHHHHHH----HhccccCceEEEEeCC-CCCCCcchHHHH-HHHHHc-----CCceEE
Q 039945 183 GFENCRMKLLRHVSFVDCPGHDILMATML----NGAAIMDGALLLIAAN-ESCPQPQTSEHL-AAVEIM-----RLQHII 251 (531)
Q Consensus 183 g~~~~~~~~~~~i~liDtPG~~~~~~~~~----~~l~~aD~~llVvDa~-~~~~~~qt~e~l-~~~~~~-----~~~~iI 251 (531)
...+.||||||+.+|...+. ..+..+|++|+|+|++ ..........++ .++... ...|++
T Consensus 90 ---------~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 160 (193)
T 2ged_A 90 ---------GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 160 (193)
T ss_dssp ---------CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEE
T ss_pred ---------CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEE
Confidence 15789999999876533222 2335589999999997 220011111222 222211 235699
Q ss_pred EEEeccCCccHHHHHHHHHHHHHHH
Q 039945 252 ILQNKVDLIQENVAINQHEAIMKFI 276 (531)
Q Consensus 252 vviNK~Dl~~~~~~~~~~~~i~~~l 276 (531)
+|+||+|+.+.....+..+.+.+.+
T Consensus 161 lv~nK~Dl~~~~~~~~~~~~l~~~l 185 (193)
T 2ged_A 161 IACNKSELFTARPPSKIKDALESEI 185 (193)
T ss_dssp EEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred EEEEchHhcCCCCHHHHHHHHHHHH
Confidence 9999999986544444444544433
No 186
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.44 E-value=1.2e-13 Score=128.48 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=95.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|.+|||||||+++|++.... .+....++.+ +.. ..+.+.|
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~---~~~~~t~~~~--~~~---------------------------~~i~~~g 75 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFN---LESKSTIGVE--FAT---------------------------RSIQVDG 75 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCC---CSCCCCCSEE--EEE---------------------------EEEEETT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC---CCCCCccceE--EEE---------------------------EEEEECC
Confidence 3589999999999999999999975321 0000111111 000 0011111
Q ss_pred CccccccceeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc--CCceEEEEEeccCCcc
Q 039945 184 FENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM--RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~--~~~~iIvviNK~Dl~~ 261 (531)
....+.++||||+++|..........+|.+++|+|............++..+... ...++++++||+|+.+
T Consensus 76 -------~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 76 -------KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp -------EEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -------EEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 0135678999998776544445557789999999987531111112222222221 2357999999999864
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHcc
Q 039945 262 ENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKK 307 (531)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~ 307 (531)
.... ..+..+.+... ....++.+||+++.|++++++.|.+.
T Consensus 149 ~~~~--~~~~a~~l~~~---~~~~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 149 LRAV--PTDEARAFAEK---NGLSFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp GCCS--CHHHHHHHHHH---TTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccc--CHHHHHHHHHH---cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 2110 11223333332 34688999999999999999998754
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.43 E-value=2.7e-14 Score=146.09 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=65.2
Q ss_pred eeEEEEecCChh-------------hHHHHHHHhcc-ccCceEEEEeCCCCCCCcchH-HHHHHHHHcCCceEEEEEecc
Q 039945 193 RHVSFVDCPGHD-------------ILMATMLNGAA-IMDGALLLIAANESCPQPQTS-EHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 193 ~~i~liDtPG~~-------------~~~~~~~~~l~-~aD~~llVvDa~~~~~~~qt~-e~l~~~~~~~~~~iIvviNK~ 257 (531)
..++||||||.. .+...+...+. ..+++|+|+|++.+ ...+.. ..+..+...+ .|+|+|+||+
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~-~~~~~~~~i~~~~~~~~-~~~i~V~NK~ 207 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-LANSDALKVAKEVDPQG-QRTIGVITKL 207 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC-GGGCHHHHHHHHHCTTC-TTEEEEEECG
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc-cchhHHHHHHHHhCcCC-CceEEEeccc
Confidence 579999999952 22333334443 44577778888765 344332 2333443334 4689999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
|+.+.... ..+.+............+++++||++|.|+++|++++.+
T Consensus 208 Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 208 DLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred cccCcchh--HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 99754220 011111100000011246788999999999999998875
No 188
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.42 E-value=3.7e-13 Score=145.12 Aligned_cols=80 Identities=24% Similarity=0.258 Sum_probs=60.0
Q ss_pred eeEEEEecCChhh-----------HHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHDI-----------LMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~~-----------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
..+.||||||+.+ |...+...+..+|++|+|+|++......+..+++..+...+ .++++|+||+|+.+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHE-DKIRVVLNKADMVE 232 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCG-GGEEEEEECGGGSC
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcC-CCEEEEEECCCccC
Confidence 3689999999764 56666777889999999999987324555566666555444 45999999999998
Q ss_pred HHHHHHHHHHHH
Q 039945 262 ENVAINQHEAIM 273 (531)
Q Consensus 262 ~~~~~~~~~~i~ 273 (531)
...+......+.
T Consensus 233 ~~el~~~~~~l~ 244 (550)
T 2qpt_A 233 TQQLMRVYGALM 244 (550)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 776666555554
No 189
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.41 E-value=8.8e-13 Score=129.69 Aligned_cols=119 Identities=14% Similarity=0.054 Sum_probs=72.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
..++|+++|++|+|||||+|+|++..... + .+.+++++... ...+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~---------~-----------------~~~~~~t~~~~-----~~~~~~~- 85 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVS---------I-----------------SPFQSEGPRPV-----MVSRSRA- 85 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSC---------C-----------------CSSSCCCSSCE-----EEEEEET-
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc---------c-----------------cCCCCcceeeE-----EEEEeeC-
Confidence 45899999999999999999999864210 0 00111111100 0001111
Q ss_pred CccccccceeeEEEEecCChhhH-------HHHHHHh--ccccCceEEEEeCCCCCCCcchHHHHHHHH-HcCC---ceE
Q 039945 184 FENCRMKLLRHVSFVDCPGHDIL-------MATMLNG--AAIMDGALLLIAANESCPQPQTSEHLAAVE-IMRL---QHI 250 (531)
Q Consensus 184 ~~~~~~~~~~~i~liDtPG~~~~-------~~~~~~~--l~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~~~---~~i 250 (531)
...++||||||+.++ .....+. ...+|++|+|+|.+.........+.+..+. .++. .|+
T Consensus 86 --------~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~i 157 (270)
T 1h65_A 86 --------GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKA 157 (270)
T ss_dssp --------TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGE
T ss_pred --------CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCE
Confidence 268999999998543 2222222 247999999998865323333445554443 3343 479
Q ss_pred EEEEeccCCccH
Q 039945 251 IILQNKVDLIQE 262 (531)
Q Consensus 251 IvviNK~Dl~~~ 262 (531)
++|+||+|+..+
T Consensus 158 ivV~nK~Dl~~~ 169 (270)
T 1h65_A 158 IVALTHAQFSPP 169 (270)
T ss_dssp EEEEECCSCCCG
T ss_pred EEEEECcccCCc
Confidence 999999999754
No 190
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.40 E-value=1.1e-12 Score=131.05 Aligned_cols=159 Identities=14% Similarity=0.061 Sum_probs=97.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCcc
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFEN 186 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~ 186 (531)
+|+++|..++|||||++++.+...... ...-+-|+.+.+.. +.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~--~~~~~~Tig~~~~~-------------------------------v~---- 43 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD--TLYLESTSNPSLEH-------------------------------FS---- 43 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG--GTTCCCCCSCCCEE-------------------------------EC----
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc--cceecCeeeeeeEE-------------------------------Ec----
Confidence 579999999999999999876432100 00011222211100 00
Q ss_pred ccccceeeEEEEecCChhhHHH---HHHHhccccCceEEEEeCCCCCCCcchHHHH-HHH---H-HcCCceEEEEEeccC
Q 039945 187 CRMKLLRHVSFVDCPGHDILMA---TMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAV---E-IMRLQHIIILQNKVD 258 (531)
Q Consensus 187 ~~~~~~~~i~liDtPG~~~~~~---~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~---~-~~~~~~iIvviNK~D 258 (531)
....+.||||||+++|.. .....++.++++|+|+|+++. . ....+.+ .++ . .....|++++.||+|
T Consensus 44 ----~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~-~~~~~~l~~~l~~~~~~~~~ipillvgNK~D 117 (331)
T 3r7w_B 44 ----TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-Y-INAITNLAMIIEYAYKVNPSINIEVLIHKVD 117 (331)
T ss_dssp ----SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-T-THHHHHHHHHHHHHHHHCTTCEEEEECCCCC
T ss_pred ----cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-H-HHHHHHHHHHHHHHhhcCCCCcEEEEEECcc
Confidence 015799999999998842 234557899999999999864 2 2233322 222 1 223356899999999
Q ss_pred CccHHHHH----HHHHHHHHHHhccc--CCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 259 LIQENVAI----NQHEAIMKFIQGTV--ADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 259 l~~~~~~~----~~~~~i~~~l~~~~--~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
+.+.+... ....+..+.+...+ ..+.+++.+||+. .+|.+.+..|...+-
T Consensus 118 L~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 118 GLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp SSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred cCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence 98654322 22222222232211 1357899999998 599999998886654
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.39 E-value=9.7e-13 Score=136.58 Aligned_cols=158 Identities=22% Similarity=0.270 Sum_probs=96.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
.-.|+|+|++|||||||+++|++... .+. +.|.++... ....+.+.+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~-------------~i~--------------~~~ftTl~p-----~~G~V~~~~- 203 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHP-------------KIA--------------PYPFTTLSP-----NLGVVEVSE- 203 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCC-------------EEC--------------CCTTCSSCC-----EEEEEECSS-
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc-------------ccc--------------Ccccceecc-----eeeEEEecC-
Confidence 35689999999999999999998632 000 011111110 000111110
Q ss_pred ccccccceeeEEEEecCChhh-------HHHHHHHhccccCceEEEEeCCCCCCCcchH----HHHHHHHHcCCceEEEE
Q 039945 185 ENCRMKLLRHVSFVDCPGHDI-------LMATMLNGAAIMDGALLLIAANESCPQPQTS----EHLAAVEIMRLQHIIIL 253 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~-------~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~----e~l~~~~~~~~~~iIvv 253 (531)
...++++|+||+.+ +.....+.+..+|.+|+|+|++ .....+.. +...+...+..+|.|++
T Consensus 204 -------~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILV 275 (416)
T 1udx_A 204 -------EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVA 275 (416)
T ss_dssp -------SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred -------cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEE
Confidence 15789999999632 2233445567899999999996 21111111 11122221223567888
Q ss_pred EeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCCC
Q 039945 254 QNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 254 iNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~~ 310 (531)
+||+|+.... ..+.+.+.++. ...+++++||++++|+++|+++|.+.+..
T Consensus 276 lNKlDl~~~~----~~~~l~~~l~~---~g~~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 276 LNKVDLLEEE----AVKALADALAR---EGLAVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp EECCTTSCHH----HHHHHHHHHHT---TTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EECCChhhHH----HHHHHHHHHHh---cCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence 9999998752 33444444432 34689999999999999999999876643
No 192
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.38 E-value=1.7e-13 Score=150.95 Aligned_cols=109 Identities=16% Similarity=0.091 Sum_probs=70.7
Q ss_pred eeEEEEecCChhh-------------HHHHHHHhc-cccCceEEEEeCCCCCCCcchH-HHHHHHHHcCCceEEEEEecc
Q 039945 193 RHVSFVDCPGHDI-------------LMATMLNGA-AIMDGALLLIAANESCPQPQTS-EHLAAVEIMRLQHIIILQNKV 257 (531)
Q Consensus 193 ~~i~liDtPG~~~-------------~~~~~~~~l-~~aD~~llVvDa~~~~~~~qt~-e~l~~~~~~~~~~iIvviNK~ 257 (531)
..++|+||||... +...+...+ ..+|++|+|+|++.+ ...+.. ..+..+...+ .|+|+|+||+
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~-~~~~d~l~ll~~L~~~g-~pvIlVlNKi 227 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-LANSDALKIAKEVDPQG-QRTIGVITKL 227 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSC-SSSCHHHHHHHHHCTTC-SSEEEEEECT
T ss_pred CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCC-cchhHHHHHHHHHHhcC-CCEEEEEeCc
Confidence 4799999999422 222233333 578999999999986 455554 4555555555 5699999999
Q ss_pred CCccHHHHHHHHHHHHH-HHhcccCCCCCEEEecccCccchHHHHHHHHc
Q 039945 258 DLIQENVAINQHEAIMK-FIQGTVADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~-~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
|+.+...... .+.. .+........+++++||++|.|+++|+++|.+
T Consensus 228 Dlv~~~~~~~---~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 228 DLMDEGTDAR---DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp TSSCTTCCSH---HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred ccCCcchhhH---HHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 9986432111 1111 00000112357899999999999999998875
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.34 E-value=1.6e-12 Score=123.43 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=65.4
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHH--HHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQEN--VAINQHE 270 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~--~~~~~~~ 270 (531)
..+.+|||||.... .. ..-..++.+++|+|+..+ ... .+......+ .|.++|+||+|+.+.. ...+..+
T Consensus 109 ~d~iiidt~G~~~~-~~--~~~~~~~~~i~vvd~~~~-~~~----~~~~~~~~~-~~~iiv~NK~Dl~~~~~~~~~~~~~ 179 (221)
T 2wsm_A 109 CDLLLIENVGNLIC-PV--DFDLGENYRVVMVSVTEG-DDV----VEKHPEIFR-VADLIVINKVALAEAVGADVEKMKA 179 (221)
T ss_dssp CSEEEEEEEEBSSG-GG--GCCCSCSEEEEEEEGGGC-TTH----HHHCHHHHH-TCSEEEEECGGGHHHHTCCHHHHHH
T ss_pred CCEEEEeCCCCCCC-Cc--hhccccCcEEEEEeCCCc-chh----hhhhhhhhh-cCCEEEEecccCCcchhhHHHHHHH
Confidence 67999999994110 00 001246889999999875 221 112222334 3478999999986431 2223333
Q ss_pred HHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 271 AIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 271 ~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.+.+. ....+++++||++|.|+++|+++|.+.+.
T Consensus 180 ~~~~~-----~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 180 DAKLI-----NPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHHH-----CTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred HHHHh-----CCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 33322 23568999999999999999999987654
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.33 E-value=1.7e-11 Score=119.42 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=70.5
Q ss_pred eeEEEEecCChhhHH------HHHHHhccccCceEEEEeCCCCCCCcchHHH-H----HHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHDILM------ATMLNGAAIMDGALLLIAANESCPQPQTSEH-L----AAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~~~~------~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~-l----~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
..+.||||||..++. ..+...+.. +++++|+|+... ........ . ......+ .|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~-~~~~~~~~~~~~~~~~~~~~~-~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEIL-KKPNDYCFVRFFALLIDLRLG-ATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGC-CSHHHHHHHHHHHHHHHHHHT-SCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhh-cCHHHHHHHHHHHHHHhcccC-CCeEEEEecccccc
Confidence 589999999976543 223345566 899999998754 33322211 1 1122334 45899999999986
Q ss_pred HHHHHHHHHHH---H---HH------------------HhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 262 ENVAINQHEAI---M---KF------------------IQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 262 ~~~~~~~~~~i---~---~~------------------l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.....+..+.+ . +. +..+ ....+++++||++|+|+++|+++|.+.++
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 54332222211 1 11 1221 23358999999999999999999986553
No 195
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.33 E-value=1.2e-12 Score=134.26 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=65.3
Q ss_pred eeEEEEecCChhhH-------------HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEEEecc
Q 039945 193 RHVSFVDCPGHDIL-------------MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIILQNKV 257 (531)
Q Consensus 193 ~~i~liDtPG~~~~-------------~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvviNK~ 257 (531)
..++||||||..++ ...+...+..+|++|+|+|+... ...+.+.+.+++.+. ..++|+|+||+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~--~~~~~~~~~l~~~~~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISREVDPSGDRTFGVLTKI 213 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS--CGGGCHHHHHHHHSCTTCTTEEEEEECG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC--CcCCHHHHHHHHHhcccCCCEEEEEeCC
Confidence 57999999997654 44556677899999999987542 122233444444432 24699999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHH
Q 039945 258 DLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCE 302 (531)
Q Consensus 258 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~ 302 (531)
|+.+.... ..+.+.... .....+++++|++++.+++++++
T Consensus 214 Dl~~~~~~--~~~~~~~~~---~~~~~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 214 DLMDKGTD--AVEILEGRS---FKLKYPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp GGCCTTCC--SHHHHTTSS---SCCSSCCEEECCCCHHHHHTTCC
T ss_pred ccCCCccc--HHHHHcCcc---ccccCCeEEEEECChHHhccCCC
Confidence 99864221 111111111 12346899999999998875433
No 196
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.23 E-value=4.7e-11 Score=121.03 Aligned_cols=106 Identities=22% Similarity=0.111 Sum_probs=64.8
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcc-hHHHHHHHHHcCCceEEEEEeccCCcc-HHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ-TSEHLAAVEIMRLQHIIILQNKVDLIQ-ENVAINQHE 270 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~q-t~e~l~~~~~~~~~~iIvviNK~Dl~~-~~~~~~~~~ 270 (531)
..+.|+||||..+-.. .....+|++++|+|+..+. ..+ ... .+.. . +.++++||+|+.. ........+
T Consensus 148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~-~~~~i~~--~i~~---~-~~ivvlNK~Dl~~~~~~s~~~~~ 217 (337)
T 2qm8_A 148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGD-ELQGIKK--GIFE---L-ADMIAVNKADDGDGERRASAAAS 217 (337)
T ss_dssp CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC-------CCT--THHH---H-CSEEEEECCSTTCCHHHHHHHHH
T ss_pred CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcc-cHHHHHH--HHhc---c-ccEEEEEchhccCchhHHHHHHH
Confidence 6899999999653211 1236899999999986441 110 000 0111 1 2467789999754 333333344
Q ss_pred HHHHHHhcccC----CCCCEEEecccCccchHHHHHHHHccC
Q 039945 271 AIMKFIQGTVA----DGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 271 ~i~~~l~~~~~----~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
++...+.-... ...+++++||++|.|+++|++.|.+..
T Consensus 218 ~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 218 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 44443321111 146899999999999999999998654
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.23 E-value=3.3e-11 Score=122.47 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFE 185 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 185 (531)
++|+++|.+|+|||||+|+|++.... +.+.|++|.+.. ...+.+++..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~---------------------------v~~~p~tTi~p~-----~g~v~~~~~r 50 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE---------------------------AANYPFCTIEPN-----TGVVPMPDPR 50 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC---------------------------------CCCCCCCC-----SSEEECCCHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc---------------------------ccCCCCceECce-----EEEEecCCcc
Confidence 68999999999999999999975310 011133333211 1112222100
Q ss_pred -----cc---cccceeeEEEEecCChhhHH-------HHHHHhccccCceEEEEeCCC
Q 039945 186 -----NC---RMKLLRHVSFVDCPGHDILM-------ATMLNGAAIMDGALLLIAANE 228 (531)
Q Consensus 186 -----~~---~~~~~~~i~liDtPG~~~~~-------~~~~~~l~~aD~~llVvDa~~ 228 (531)
.. .......+.|+||||+.++. ...+..++.+|++++|+|++.
T Consensus 51 ~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 51 LDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 00 00001479999999976543 233456789999999999985
No 198
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.20 E-value=6.3e-11 Score=123.01 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=45.1
Q ss_pred CceEEEEeCC-CCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccc
Q 039945 218 DGALLLIAAN-ESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYN 296 (531)
Q Consensus 218 D~~llVvDa~-~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~g 296 (531)
|++|++++.+ .+ +.+...+.+..+.. + .++|+|+||+|+.....+....+++.+.+... +++++.+|++++.+
T Consensus 140 ~vlL~ldePt~~~-L~~~d~~~lk~L~~-~-v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~---~i~~~~~sa~~~~~ 213 (418)
T 2qag_C 140 QCCLYFIAPSGHG-LKPLDIEFMKRLHE-K-VNIIPLIAKADTLTPEECQQFKKQIMKEIQEH---KIKIYEFPETDDEE 213 (418)
T ss_dssp CEEEEECCC-CCS-CCHHHHHHHHHHTT-T-SEEEEEEESTTSSCHHHHHHHHHHHHHHHHHH---TCCCCCCC------
T ss_pred eEEEEEecCcccC-CCHHHHHHHHHHhc-c-CcEEEEEEcccCccHHHHHHHHHHHHHHHHHc---CCeEEeCCCCCCcC
Confidence 4456666554 34 45555455554442 3 56999999999998766666667777776643 56788999999999
Q ss_pred hHHHHHHHHccCC
Q 039945 297 IDVVCEYIVKKIP 309 (531)
Q Consensus 297 i~~L~~~L~~~l~ 309 (531)
+++++..|...+|
T Consensus 214 v~~~~~~l~~~iP 226 (418)
T 2qag_C 214 ENKLVKKIKDRLP 226 (418)
T ss_dssp -----------CC
T ss_pred HHHHHHHHHhhCC
Confidence 9988777765554
No 199
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.19 E-value=4.4e-11 Score=119.33 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=47.0
Q ss_pred CceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccch
Q 039945 218 DGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNI 297 (531)
Q Consensus 218 D~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi 297 (531)
++++++++.+.+.+.+...+.+..+. ...++++|+||.|+..........+++.++++.. +++++++||++| |+
T Consensus 128 ~~ll~ldePt~~~Ld~~~~~~l~~l~--~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~---~~~~~e~Sa~~~-~v 201 (301)
T 2qnr_A 128 HCCFYFISPFGHGLKPLDVAFMKAIH--NKVNIVPVIAKADTLTLKERERLKKRILDEIEEH---NIKIYHLPDAES-DE 201 (301)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHHT--TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHT---TCCCCCCC-------
T ss_pred hheeeeecCcccCCCHHHHHHHHHHH--hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHc---CCeEEecCCccc-cc
Confidence 44566665443224444433333222 2236899999999987655544455666666542 468999999999 99
Q ss_pred HHHHHHHHccCC
Q 039945 298 DVVCEYIVKKIP 309 (531)
Q Consensus 298 ~~L~~~L~~~l~ 309 (531)
+++++.+.+.+.
T Consensus 202 ~e~f~~l~~~i~ 213 (301)
T 2qnr_A 202 DEDFKEQTRLLK 213 (301)
T ss_dssp ---CHHHHHHHH
T ss_pred cHHHHHHHHHhh
Confidence 999888776553
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.15 E-value=7.8e-11 Score=120.36 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=29.1
Q ss_pred eeEEEEecCChhhH-------HHHHHHhccccCceEEEEeCCC
Q 039945 193 RHVSFVDCPGHDIL-------MATMLNGAAIMDGALLLIAANE 228 (531)
Q Consensus 193 ~~i~liDtPG~~~~-------~~~~~~~l~~aD~~llVvDa~~ 228 (531)
..+.|+||||..++ ....+..++.+|++++|+|++.
T Consensus 69 ~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 69 THVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 57999999997542 3456667899999999999985
No 201
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.00 E-value=8.5e-10 Score=104.78 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=61.0
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAI 272 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i 272 (531)
..+.++|++|.-.- . ...-...+..+.|+|+..+ ..... .. ...++ .|.++|+||+|+.+... ...+++
T Consensus 119 ~d~~~id~~g~i~~-~--~s~~~~~~~~~~v~~~~~~-~~~~~-~~---~~~~~-~~~iiv~NK~Dl~~~~~--~~~~~~ 187 (226)
T 2hf9_A 119 IDLLFIENVGNLIC-P--ADFDLGTHKRIVVISTTEG-DDTIE-KH---PGIMK-TADLIVINKIDLADAVG--ADIKKM 187 (226)
T ss_dssp CSEEEEECCSCSSG-G--GGCCCSCSEEEEEEEGGGC-TTTTT-TC---HHHHT-TCSEEEEECGGGHHHHT--CCHHHH
T ss_pred CCEEEEeCCCCccC-c--chhhhccCcEEEEEecCcc-hhhHh-hh---hhHhh-cCCEEEEeccccCchhH--HHHHHH
Confidence 47999999993110 0 0011235677888886543 11111 11 11134 45799999999865311 012223
Q ss_pred HHHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 273 MKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 273 ~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.+.++.. ....+++++||++|.|+++|+++|.+.+
T Consensus 188 ~~~~~~~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 188 ENDAKRI-NPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHH-CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 3333221 2356899999999999999999987543
No 202
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.92 E-value=6.8e-10 Score=113.86 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=71.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPG 183 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 183 (531)
...+|+++|.+|+|||||+|+|++.... +.+.|++|.+.. ...+.+++
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~---------------------------~~~~p~tTi~p~-----~g~v~v~~ 68 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQAS---------------------------AENFPFCTIDPN-----ESRVPVPD 68 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC----------------------------------------CCS-----EEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc---------------------------ccCCCccccCce-----eEEEEECC
Confidence 3478999999999999999999986310 011122222211 01111111
Q ss_pred Ccc-----cc---ccceeeEEEEecCChhhHHH-------HHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCc
Q 039945 184 FEN-----CR---MKLLRHVSFVDCPGHDILMA-------TMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQ 248 (531)
Q Consensus 184 ~~~-----~~---~~~~~~i~liDtPG~~~~~~-------~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~ 248 (531)
..- .+ ......+.|+||||+..+.. .....++.+|++++|+|+.+.. ...| +... ..
T Consensus 69 ~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~----~i~~---v~~~-~d 140 (396)
T 2ohf_A 69 ERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD----DITH---VEGS-VD 140 (396)
T ss_dssp HHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--------------------CT
T ss_pred ccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc----chhh---hcCC-CC
Confidence 000 00 00013699999999765433 4566779999999999997431 1112 1111 12
Q ss_pred eEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEec--ccCccchHHHHHHHHccCCC
Q 039945 249 HIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPIS--AQLKYNIDVVCEYIVKKIPI 310 (531)
Q Consensus 249 ~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iS--a~~g~gi~~L~~~L~~~l~~ 310 (531)
| +|++|....+-.....+.+.+.+.. ....+.| ++.+.+..++++.+...++.
T Consensus 141 P----~~di~~i~~El~l~d~~~~~k~~~~-----~~k~~~~~g~~~~~~~~~ll~~i~~~L~e 195 (396)
T 2ohf_A 141 P----IRDIEIIHEELQLKDEEMIGPIIDK-----LEKVAVRGGDKKLKPEYDIMCKVKSWVID 195 (396)
T ss_dssp T----HHHHHHHHHHHHHHHHHHHHHHHHT-----TCSCC--------CCHHHHHHHHHHHTTC
T ss_pred h----HHHHHHhhhhhhhhhHHHHHHhhhh-----hhhhhhcccchhhhhHHHHHHHHHHHHHh
Confidence 2 5555554332222222333333321 1222334 46677888888888777754
No 203
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.86 E-value=6.7e-09 Score=110.04 Aligned_cols=107 Identities=16% Similarity=0.103 Sum_probs=64.0
Q ss_pred eeEEEEecCChh----hHHHHHHHh--ccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceE-EEEEeccCCccHHHH
Q 039945 193 RHVSFVDCPGHD----ILMATMLNG--AAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHI-IILQNKVDLIQENVA 265 (531)
Q Consensus 193 ~~i~liDtPG~~----~~~~~~~~~--l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~i-IvviNK~Dl~~~~~~ 265 (531)
..+.||||||.. .+...+... +..+|.+++|+|+..+ .. ....+..+... .++ ++|+||+|.......
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g-~~--~~~~a~~~~~~--~~i~gvVlNK~D~~~~~g~ 258 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIG-QA--CEAQAKAFKDK--VDVASVIVTKLDGHAKGGG 258 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCC-TT--HHHHHHHHHHH--HCCCCEEEECTTSCCCCTH
T ss_pred CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccc-cc--HHHHHHHHHhh--cCceEEEEeCCccccchHH
Confidence 689999999954 333333222 2378999999999876 22 22333333221 233 789999998743211
Q ss_pred HHHHHHHHHHHhc------cc------CCCCCEEEecccCccc-hHHHHHHHHcc
Q 039945 266 INQHEAIMKFIQG------TV------ADGAPVVPISAQLKYN-IDVVCEYIVKK 307 (531)
Q Consensus 266 ~~~~~~i~~~l~~------~~------~~~~~ii~iSa~~g~g-i~~L~~~L~~~ 307 (531)
... +...+.. .. ....|.+++|+..|.| +++|++++.+.
T Consensus 259 --~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 259 --ALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp --HHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred --HHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 111 1111110 00 0123456789999999 99999999865
No 204
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.84 E-value=1.2e-08 Score=105.43 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=44.9
Q ss_pred ceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecc
Q 039945 219 GALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISA 291 (531)
Q Consensus 219 ~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa 291 (531)
+++||+|+..+ ....+.+.+..+. ...++|+|+||+|...+.+.....+.+.+.++. .+++++.+|.
T Consensus 151 ~v~fI~d~~~~-l~~~Dieilk~L~--~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~---~gi~I~~is~ 217 (427)
T 2qag_B 151 CLYFIAPTGHS-LKSLDLVTMKKLD--SKVNIIPIIAKADAISKSELTKFKIKITSELVS---NGVQIYQFPT 217 (427)
T ss_dssp EEEEECCCC----CHHHHHHHHHTC--SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT---TBCCCCCCC-
T ss_pred EEEEEeCCCCC-CCHHHHHHHHHHh--hCCCEEEEEcchhccchHHHHHHHHHHHHHHHH---cCCcEEecCC
Confidence 36667787766 5555544444443 236799999999999888777777788776653 4677888885
No 205
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.81 E-value=7.5e-11 Score=120.93 Aligned_cols=148 Identities=14% Similarity=0.052 Sum_probs=80.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
..+|+++|.+|+|||||+|+|++..... .....+ ++..|+||++... ..+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~----~~~~~~----------------~~~~~gtT~~~~~-------~~~~-- 210 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDE----TENVIT----------------TSHFPGTTLDLID-------IPLD-- 210 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTS----CSSCCE----------------EECCC----CEEE-------EESS--
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccc----ccccee----------------cCCCCCeecceEE-------EEec--
Confidence 4689999999999999999999753110 000111 1234666665311 1111
Q ss_pred ccccccceeeEEEEecCChhh-------HHHHHHHh---ccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEE
Q 039945 185 ENCRMKLLRHVSFVDCPGHDI-------LMATMLNG---AAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQ 254 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~-------~~~~~~~~---l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvvi 254 (531)
..+.++||||..+ .....+.. ....+.+++++|+... ........+..+...+ .|+++++
T Consensus 211 --------~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~~~d~l~~~~-~~~~~v~ 280 (368)
T 3h2y_A 211 --------EESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQT-LFFSGLARFDYVSGGR-RAFTCHF 280 (368)
T ss_dssp --------SSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEE-EEETTTEEEEEEESSS-EEEEEEE
T ss_pred --------CCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCE-EEEcceEEEEEecCCC-ceEEEEe
Confidence 3489999999521 11222222 3678999999998432 0000000011222233 4699999
Q ss_pred eccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccch
Q 039945 255 NKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNI 297 (531)
Q Consensus 255 NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi 297 (531)
||+|.......+...+.+++.+ ...+.|.++...+++
T Consensus 281 nk~d~~~~~~~~~~~~~~~~~~------g~~l~p~~~~~~~~~ 317 (368)
T 3h2y_A 281 SNRLTIHRTKLEKADELYKNHA------GDLLSPPTPEELENM 317 (368)
T ss_dssp CTTSCEEEEEHHHHHHHHHHHB------TTTBCSSCHHHHHTS
T ss_pred cCccccccccHHHHHHHHHHHh------CCccCCCchhhHhhc
Confidence 9999987665555555555543 224555555443333
No 206
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.80 E-value=1.2e-10 Score=119.39 Aligned_cols=147 Identities=14% Similarity=0.054 Sum_probs=81.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
..+|+++|.+|+|||||+|+|++..... ....+. ++.|++|++... ..+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~-----~~~~~~----------------~~~~gtT~~~~~-------~~~~-- 211 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGK-----GNVITT----------------SYFPGTTLDMIE-------IPLE-- 211 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHT-----TCCCEE----------------EECTTSSCEEEE-------EECS--
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCC-----ccceee----------------cCCCCeEEeeEE-------EEeC--
Confidence 4689999999999999999999752100 001111 123566655310 1111
Q ss_pred ccccccceeeEEEEecCChhh------H-HHHHHHhc---cccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEE
Q 039945 185 ENCRMKLLRHVSFVDCPGHDI------L-MATMLNGA---AIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQ 254 (531)
Q Consensus 185 ~~~~~~~~~~i~liDtPG~~~------~-~~~~~~~l---~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvvi 254 (531)
..+.++||||..+ + ....+..+ ...|.+++++++... ........+..+...+ .++++++
T Consensus 212 --------~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~~l~~l~~~~-~~~~~v~ 281 (369)
T 3ec1_A 212 --------SGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQT-LFFGGLARLDYIKGGR-RSFVCYM 281 (369)
T ss_dssp --------TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEE-EEETTTEEEEEEESSS-EEEEEEE
T ss_pred --------CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCce-EEECCEEEEEEccCCC-ceEEEEe
Confidence 3589999999431 1 11222222 678999999998532 0000000011222233 4699999
Q ss_pred eccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccch
Q 039945 255 NKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNI 297 (531)
Q Consensus 255 NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi 297 (531)
||+|.......+...+.+++.+ ...+.|.++...+++
T Consensus 282 ~k~d~~~~~~~~~~~~~~~~~~------g~~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 282 ANELTVHRTKLEKADSLYANQL------GELLSPPSKRYAAEF 318 (369)
T ss_dssp CTTSCEEEEEGGGHHHHHHHHB------TTTBCSSCGGGTTTC
T ss_pred cCCcccccccHHHHHHHHHHhc------CCccCCCCchhhhhc
Confidence 9999986544444444454443 235555565554444
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=1.2e-08 Score=104.84 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=56.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVP 182 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 182 (531)
....+|+++|++|+|||||+|+|+|.... . +.+.|+||++.. ...+.+.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a---------~-----------------~~~~p~tTi~p~-----~G~v~v~ 66 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLG---------N-----------------PANYPYATIDPE-----EAKVAVP 66 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTT---------S-----------------TTCCSSCCCCTT-----EEEEEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcc---------c-----------------ccCCCceeecce-----eeeeeeC
Confidence 34578999999999999999999985310 0 112234433321 1111221
Q ss_pred CCc--------cccccceeeEEEEecCChhh-------HHHHHHHhccccCceEEEEeCCC
Q 039945 183 GFE--------NCRMKLLRHVSFVDCPGHDI-------LMATMLNGAAIMDGALLLIAANE 228 (531)
Q Consensus 183 g~~--------~~~~~~~~~i~liDtPG~~~-------~~~~~~~~l~~aD~~llVvDa~~ 228 (531)
|.. .........+.++|+||... +.......++.+|.+++|+|+..
T Consensus 67 ~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 67 DERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 100 00000013589999999532 33456667789999999999864
No 208
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.77 E-value=6.5e-08 Score=100.02 Aligned_cols=165 Identities=18% Similarity=0.214 Sum_probs=93.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCCcCccccceecceEeeecceeeeeecccCCCCCCCccccccCCCCCCCCCCCCCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGF 184 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~git~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 184 (531)
...++++|++|+|||||+|.|+|..... ...+++.- ..+++. +
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~-----~GsI~~~g-----------------~~~t~~--------------~- 111 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEE-----EGAAKTGV-----------------VEVTME--------------R- 111 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTS-----TTSCCCCC---------------------CC--------------C-
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcc-----CceEEECC-----------------eeccee--------------E-
Confidence 3579999999999999999999853210 01111100 000000 0
Q ss_pred ccccc-cceeeEEEEecCChhh---HHHHHHH--hccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccC
Q 039945 185 ENCRM-KLLRHVSFVDCPGHDI---LMATMLN--GAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVD 258 (531)
Q Consensus 185 ~~~~~-~~~~~i~liDtPG~~~---~~~~~~~--~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~D 258 (531)
..+. .....++++|+||... .....+. ++...|..++ ++... .+.|.......+...+ +|+++|+||.|
T Consensus 112 -~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~--~~kqrv~la~aL~~~~-~p~~lV~tkpd 186 (413)
T 1tq4_A 112 -HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR--FKKNDIDIAKAISMMK-KEFYFVRTKVD 186 (413)
T ss_dssp -EEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC--CCHHHHHHHHHHHHTT-CEEEEEECCHH
T ss_pred -EeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC--ccHHHHHHHHHHHhcC-CCeEEEEecCc
Confidence 0000 0003689999999531 1233333 3344455554 77643 2445555555666666 57999999999
Q ss_pred Ccc---------HHHHHHHHHHHHHHH----hcccCCCCCEEEecc--cCccchHHHHHHHHccCCCC
Q 039945 259 LIQ---------ENVAINQHEAIMKFI----QGTVADGAPVVPISA--QLKYNIDVVCEYIVKKIPIP 311 (531)
Q Consensus 259 l~~---------~~~~~~~~~~i~~~l----~~~~~~~~~ii~iSa--~~g~gi~~L~~~L~~~l~~~ 311 (531)
+.- .....+..+.+.++. ...+.....+|++|+ ..+.|+++|.+.|.+.+|..
T Consensus 187 lllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 187 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred ccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 751 111223333344332 121122457899999 67778999999999888753
No 209
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.75 E-value=6.7e-08 Score=94.62 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=48.0
Q ss_pred cccCceEEEEeCC-CCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhccc
Q 039945 215 AIMDGALLLIAAN-ESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTV 280 (531)
Q Consensus 215 ~~aD~~llVvDa~-~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~ 280 (531)
..++++++++|.. .+ ..+...+.+..+... .++|+|+||+|.....+.....+.+.+.++..+
T Consensus 110 aRal~~lllldep~~g-L~~lD~~~l~~L~~~--~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~ 173 (270)
T 3sop_A 110 TRVHCCLYFISPTGHS-LRPLDLEFMKHLSKV--VNIIPVIAKADTMTLEEKSEFKQRVRKELEVNG 173 (270)
T ss_dssp CSCCEEEEEECCCSSS-CCHHHHHHHHHHHTT--SEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred heeeeeeEEEecCCCc-CCHHHHHHHHHHHhc--CcEEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 4468889999965 44 677777777666654 579999999999988887777788887776543
No 210
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=98.70 E-value=1.5e-07 Score=77.87 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=65.1
Q ss_pred CCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeeccccee
Q 039945 315 FIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQ 394 (531)
Q Consensus 315 ~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~ 394 (531)
...|..+.|...+..- -|.++.|+|.+|+|++|+.| |++. ...+|+||++++++++
T Consensus 31 ~~~P~k~~ilp~~~~v---------FgpvivGrVe~G~LK~G~~V---Pg~~------------~vg~VkSIE~~~e~v~ 86 (116)
T 1xe1_A 31 KKPAGKVVVEEVVNIM---------GKDVIIGTVESGMIGVGFKV---KGPS------------GIGGIVRIERNREKVE 86 (116)
T ss_dssp SSCSEEEEEEEEEEET---------TEEEEEEEEEEEEEETTCEE---ECSS------------CEEEEEEEEETTEEES
T ss_pred ecCcEEEEEEecCCeE---------ECCeeEEEEeEEEEcCCCCc---CCCc------------eEEEEEEEEECCcCcC
Confidence 3456677776644321 27889999999999999999 7630 1478999999999999
Q ss_pred EEecCceEEEeeecCccccccccccceeec
Q 039945 395 FAVPGGLIGVGTTMDPTLTRADRLVGQVLG 424 (531)
Q Consensus 395 ~a~aG~~v~i~l~~~~~~~~~~i~~G~vl~ 424 (531)
+|.+||.|+++++ +++. ++.+|++|.
T Consensus 87 eA~~GdnVai~Ik---g~~~-~I~~GdVLy 112 (116)
T 1xe1_A 87 FAIAGDRIGISIE---GKIG-KVKKGDVLE 112 (116)
T ss_dssp EEETTCEEEEEEE---SCCC-CCCTTCEEE
T ss_pred CcCCCCEEEEEEE---CCcc-ccCCCcEEE
Confidence 9999999999998 6555 899999884
No 211
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.64 E-value=3.6e-08 Score=98.16 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=71.4
Q ss_pred eEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcc-hHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHH
Q 039945 194 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ-TSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAI 272 (531)
Q Consensus 194 ~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~q-t~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i 272 (531)
.+.+||| +++|.......++.+|++|+|+|++....... ...++..++..+ .|+++|+||+|+.+....+ ..+++
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~-~piilv~NK~DL~~~~~v~-~~~~~ 139 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNE-LETVMVINKMDLYDEDDLR-KVREL 139 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTT-CEEEEEECCGGGCCHHHHH-HHHHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCC-CCEEEEEeHHHcCCchhHH-HHHHH
Confidence 6899999 77665555567899999999999987521222 223334444445 5689999999998654321 12222
Q ss_pred HHHHhcccCCCCCEEEecccCccchHHHHHHHH
Q 039945 273 MKFIQGTVADGAPVVPISAQLKYNIDVVCEYIV 305 (531)
Q Consensus 273 ~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~ 305 (531)
.+.+. .. .+++++||++|.|+++|++.+.
T Consensus 140 ~~~~~---~~-~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 140 EEIYS---GL-YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHT---TT-SCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHh---hh-CcEEEEECCCCcCHHHHHHHhc
Confidence 22222 12 7899999999999999999875
No 212
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.64 E-value=6.8e-08 Score=95.17 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=69.6
Q ss_pred EEecCChh-hHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHH
Q 039945 197 FVDCPGHD-ILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKF 275 (531)
Q Consensus 197 liDtPG~~-~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~ 275 (531)
+-+.|||. +..+.+...+..+|++++|+||..+ ......+ +.+.++.+|.++|+||+|+.+....+ ...++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p-~~~~~~~---l~~~l~~kp~ilVlNK~DL~~~~~~~----~~~~~ 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIP-MSSRNPM---IEDILKNKPRIMLLNKADKADAAVTQ----QWKEH 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTST-TTTSCHH---HHHHCSSSCEEEEEECGGGSCHHHHH----HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCC-CccCCHH---HHHHHCCCCEEEEEECcccCCHHHHH----HHHHH
Confidence 34679986 5677888899999999999999876 3333222 22334667899999999999754332 23333
Q ss_pred HhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 276 IQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 276 l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
++. ...+++++||++|.|+++|++.|.+.++
T Consensus 75 ~~~---~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 75 FEN---QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHT---TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHh---cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 322 2458999999999999999988876543
No 213
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.53 E-value=4e-08 Score=99.82 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=77.1
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCC-------CcchHHHHHHHH---H---cCCceEEEEEeccC
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCP-------QPQTSEHLAAVE---I---MRLQHIIILQNKVD 258 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~-------~~qt~e~l~~~~---~---~~~~~iIvviNK~D 258 (531)
...+.+|||+|++.|...+......++++|+|+|.++... .....+...++. . +...|+|+++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 3689999999999998888888899999999999986210 111222222222 1 23357999999999
Q ss_pred CccHH-----------------HHHHHHHHHHHHHhccc----CCCCCEEEecccCccchHHHHHHHHccC
Q 039945 259 LIQEN-----------------VAINQHEAIMKFIQGTV----ADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 259 l~~~~-----------------~~~~~~~~i~~~l~~~~----~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... ..++..+.+...+.... ...+.++++||++|.||+++++++.+.+
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 85321 11222222222221211 2356789999999999999999987644
No 214
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.46 E-value=8.9e-08 Score=97.57 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=69.2
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCC----------CCcchHHHHHHHHH---cCCceEEEEEeccC
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESC----------PQPQTSEHLAAVEI---MRLQHIIILQNKVD 258 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~----------~~~qt~e~l~~~~~---~~~~~iIvviNK~D 258 (531)
...+.+|||+|++.|...+...+..++++|+|+|.++.. ........+..+.. +...|+|+++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 368999999999998888888889999999999998621 00111222222211 23357999999999
Q ss_pred CccHH------------------HHHHHHHHHHHHHhccc----CCCCCEEEecccCccchHHHHHHHHccC
Q 039945 259 LIQEN------------------VAINQHEAIMKFIQGTV----ADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 259 l~~~~------------------~~~~~~~~i~~~l~~~~----~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... ..++..+.+...+.... ...+.++++||++|.||+++++++.+.+
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 86321 12222222222111111 2346789999999999999999887543
No 215
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.37 E-value=1.1e-06 Score=91.71 Aligned_cols=111 Identities=16% Similarity=0.101 Sum_probs=63.9
Q ss_pred eeEEEEecCChhh----HHHHHHH--hccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC-ceEEEEEeccCCccHHHH
Q 039945 193 RHVSFVDCPGHDI----LMATMLN--GAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL-QHIIILQNKVDLIQENVA 265 (531)
Q Consensus 193 ~~i~liDtPG~~~----~~~~~~~--~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~-~~iIvviNK~Dl~~~~~~ 265 (531)
..+.||||||... +...+.. .+..+|.+++|+|+..+ . .....+.... ... +...+|+||+|......
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g-~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~~~~g- 255 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIG-Q--QAGIQAKAFK-EAVGEIGSIIVTKLDGSAKGG- 255 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGG-G--GHHHHHHHHH-TTSCSCEEEEEECSSSCSTTH-
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeecccc-H--HHHHHHHHHh-hcccCCeEEEEeCCCCccchH-
Confidence 6899999999532 3333322 23468999999999765 2 2222222222 123 44789999999864321
Q ss_pred HHHHHHHHHHHhc------cc------CCCCCEEEecccCccc-hHHHHHHHHccCCC
Q 039945 266 INQHEAIMKFIQG------TV------ADGAPVVPISAQLKYN-IDVVCEYIVKKIPI 310 (531)
Q Consensus 266 ~~~~~~i~~~l~~------~~------~~~~~ii~iSa~~g~g-i~~L~~~L~~~l~~ 310 (531)
.... +...+.. .+ ....|..++|+..|.| +..|++.+.+.++.
T Consensus 256 -~~l~-~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e 311 (432)
T 2v3c_C 256 -GALS-AVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDE 311 (432)
T ss_dssp -HHHH-HHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCS
T ss_pred -HHHH-HHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 1111 2222110 00 0122445678888998 88888888766553
No 216
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.34 E-value=3.6e-07 Score=89.00 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=62.3
Q ss_pred CChhhH-HHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcc
Q 039945 201 PGHDIL-MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGT 279 (531)
Q Consensus 201 PG~~~~-~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~ 279 (531)
|||... .+.+...+..+|++++|+||..+ ....... +.++ + +|.++|+||+|+++....+.. .++++.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P-~~~~~~~-l~ll---~-k~~iivlNK~DL~~~~~~~~~----~~~~~~- 73 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAP-FATSAYG-VDFS---R-KETIILLNKVDIADEKTTKKW----VEFFKK- 73 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTST-TTTSCTT-SCCT---T-SEEEEEEECGGGSCHHHHHHH----HHHHHH-
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCC-CcCcChH-HHhc---C-CCcEEEEECccCCCHHHHHHH----HHHHHH-
Confidence 888643 46778888999999999999876 2322211 1112 4 678999999999986443332 233322
Q ss_pred cCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 280 VADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 280 ~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
.+.++ ++||++|.|+++|+++|...+
T Consensus 74 --~g~~v-~iSa~~~~gi~~L~~~l~~~~ 99 (262)
T 3cnl_A 74 --QGKRV-ITTHKGEPRKVLLKKLSFDRL 99 (262)
T ss_dssp --TTCCE-EECCTTSCHHHHHHHHCCCTT
T ss_pred --cCCeE-EEECCCCcCHHHHHHHHHHhh
Confidence 24577 999999999999999987543
No 217
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.30 E-value=2.9e-07 Score=93.42 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=72.4
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCC-------CCCCcch-HH---HHHHHHH---cCCceEEEEEeccC
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE-------SCPQPQT-SE---HLAAVEI---MRLQHIIILQNKVD 258 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~-------~~~~~qt-~e---~l~~~~~---~~~~~iIvviNK~D 258 (531)
..+.+|||+|++.|...+....+.+|++|+|+|.++ . ..... .+ .+..+.. ....|+|+|.||+|
T Consensus 183 v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~-~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 183 EVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFED-EQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp -EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSC-TTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred eeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccc-cchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 679999999999998888888899999999999871 1 11112 12 2222221 23357999999999
Q ss_pred CccHHH-------------------HHHHHHHHHHHHhc----c---c------CCCCCEEEecccCccchHHHHHHHHc
Q 039945 259 LIQENV-------------------AINQHEAIMKFIQG----T---V------ADGAPVVPISAQLKYNIDVVCEYIVK 306 (531)
Q Consensus 259 l~~~~~-------------------~~~~~~~i~~~l~~----~---~------~~~~~ii~iSa~~g~gi~~L~~~L~~ 306 (531)
+..... -....++..++++. . . .....++++||++++||+++++++.+
T Consensus 262 L~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~ 341 (354)
T 2xtz_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence 853210 00012222222211 0 0 12335689999999999999998875
Q ss_pred cC
Q 039945 307 KI 308 (531)
Q Consensus 307 ~l 308 (531)
.+
T Consensus 342 ~I 343 (354)
T 2xtz_A 342 TL 343 (354)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 218
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.25 E-value=2.5e-06 Score=84.80 Aligned_cols=89 Identities=20% Similarity=0.275 Sum_probs=60.9
Q ss_pred HhccccCceEEEEeCCCCCCCcch-HHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEec
Q 039945 212 NGAAIMDGALLLIAANESCPQPQT-SEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPIS 290 (531)
Q Consensus 212 ~~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iS 290 (531)
..+.++|.+++|+|++.+...... ..++..+...++ |+|+|+||+|+.+..... ..+++.++++. ...+++++|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~-~~ilV~NK~DL~~~~~v~-~~~~~~~~~~~---~g~~~~~~S 149 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKV-EPVIVFNKIDLLNEEEKK-ELERWISIYRD---AGYDVLKVS 149 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTC-EEEEEECCGGGCCHHHHH-HHHHHHHHHHH---TTCEEEECC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCC-CEEEEEEcccCCCccccH-HHHHHHHHHHH---CCCeEEEEE
Confidence 467999999999999875223322 344455555564 579999999998754211 12333333332 246899999
Q ss_pred ccCccchHHHHHHHH
Q 039945 291 AQLKYNIDVVCEYIV 305 (531)
Q Consensus 291 a~~g~gi~~L~~~L~ 305 (531)
|++|.|+++|++.+.
T Consensus 150 A~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 150 AKTGEGIDELVDYLE 164 (302)
T ss_dssp TTTCTTHHHHHHHTT
T ss_pred CCCCCCHHHHHhhcc
Confidence 999999999998875
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.24 E-value=1.9e-06 Score=88.23 Aligned_cols=109 Identities=14% Similarity=0.033 Sum_probs=67.1
Q ss_pred EEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHH-HHHHHHHHH
Q 039945 195 VSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENV-AINQHEAIM 273 (531)
Q Consensus 195 i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~-~~~~~~~i~ 273 (531)
+.-+++| +++|..........+|++++|+|+++. ......+ +.+.++.+|+++|+||+|+.+... .+...+.+.
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~-~~s~~~~---l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~ 125 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDF-NGSFIPG---LPRFAADNPILLVGNKADLLPRSVKYPKLLRWMR 125 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCS-GGGCCSS---HHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCC-CCchhhH---HHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHH
Confidence 3444554 567766665566888999999999875 2211111 223345678999999999976421 122333444
Q ss_pred HHHhcccCCCCCEEEecccCccchHHHHHHHHccC
Q 039945 274 KFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 274 ~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
++++..+....+++++||++|+|+++|++.|.+..
T Consensus 126 ~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 126 RMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 44443332234789999999999999999997544
No 220
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.23 E-value=8.9e-07 Score=91.07 Aligned_cols=116 Identities=16% Similarity=0.077 Sum_probs=73.5
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCC----------CCCCcchHHHHHHHHH---cCCceEEEEEeccCC
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE----------SCPQPQTSEHLAAVEI---MRLQHIIILQNKVDL 259 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~----------~~~~~qt~e~l~~~~~---~~~~~iIvviNK~Dl 259 (531)
..+.+|||+|++.|...+......++++|+|+|.++ .........++..+.. ....|+|+|.||+|+
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence 679999999999998888888899999999999986 1001111222222221 123469999999998
Q ss_pred ccHHHH--H--------------------------HHHHHHHHHH----hcc------cCCCCCEEEecccCccchHHHH
Q 039945 260 IQENVA--I--------------------------NQHEAIMKFI----QGT------VADGAPVVPISAQLKYNIDVVC 301 (531)
Q Consensus 260 ~~~~~~--~--------------------------~~~~~i~~~l----~~~------~~~~~~ii~iSa~~g~gi~~L~ 301 (531)
...... . ...++...++ ... ....+.++++||+++.||+.++
T Consensus 297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF 376 (402)
T 1azs_C 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 376 (402)
T ss_dssp HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence 542110 0 0122222221 111 0123457789999999999999
Q ss_pred HHHHccC
Q 039945 302 EYIVKKI 308 (531)
Q Consensus 302 ~~L~~~l 308 (531)
+++.+.+
T Consensus 377 ~~v~~~I 383 (402)
T 1azs_C 377 NDCRDII 383 (402)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876543
No 221
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.23 E-value=1.6e-06 Score=86.80 Aligned_cols=117 Identities=21% Similarity=0.155 Sum_probs=76.1
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCC-------CCCCCcchHHHHHHHHH------cCCceEEEEEeccC
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAAN-------ESCPQPQTSEHLAAVEI------MRLQHIIILQNKVD 258 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~-------~~~~~~qt~e~l~~~~~------~~~~~iIvviNK~D 258 (531)
...+.+|||+|++.|...+....+.++++|+|+|.+ +........+...++.. +...|+|+++||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 368899999999999888888889999999999875 21111112222222221 12357999999999
Q ss_pred CccHH------------------HHHHHHHHHHHHHhccc---CCCCCEEEecccCccchHHHHHHHHccC
Q 039945 259 LIQEN------------------VAINQHEAIMKFIQGTV---ADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 259 l~~~~------------------~~~~~~~~i~~~l~~~~---~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
+.... ..++..+.+.+.+.... ...+.+..+||+.+.||+.+++.+.+.+
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 86422 12233333333222211 1345678899999999999999887644
No 222
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.18 E-value=2.9e-06 Score=85.23 Aligned_cols=116 Identities=17% Similarity=0.157 Sum_probs=76.1
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCC-------CCCCcchHH---HHH-HHH--HcCCceEEEEEeccC
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE-------SCPQPQTSE---HLA-AVE--IMRLQHIIILQNKVD 258 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~-------~~~~~qt~e---~l~-~~~--~~~~~~iIvviNK~D 258 (531)
...+.+|||+|++.|...+....+.++++|+|+|.++ ........+ .+. ++. .+...|+|++.||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 3679999999999999999999999999999999972 101111222 222 222 123357999999999
Q ss_pred CccHHH-----------------HHHHHHHHHHHH------hcccC--------------CCCCEEEecccCccchHHHH
Q 039945 259 LIQENV-----------------AINQHEAIMKFI------QGTVA--------------DGAPVVPISAQLKYNIDVVC 301 (531)
Q Consensus 259 l~~~~~-----------------~~~~~~~i~~~l------~~~~~--------------~~~~ii~iSa~~g~gi~~L~ 301 (531)
+..... .++..+.+.+.+ ..... ..+.+.++||+...||+.++
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 864211 233334444433 11110 23567899999999999888
Q ss_pred HHHHcc
Q 039945 302 EYIVKK 307 (531)
Q Consensus 302 ~~L~~~ 307 (531)
+.+.+.
T Consensus 320 ~~v~~~ 325 (340)
T 4fid_A 320 MLAVDV 325 (340)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.17 E-value=1.9e-06 Score=89.49 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=53.0
Q ss_pred eeEEEEecCChh----hHHHHH--HHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHHHH
Q 039945 193 RHVSFVDCPGHD----ILMATM--LNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAI 266 (531)
Q Consensus 193 ~~i~liDtPG~~----~~~~~~--~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~ 266 (531)
..+.||||||.. .....+ +..+..+|.++||+||..+ . ........+.. ..+...+|+||+|.......
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g-q--~a~~~a~~f~~-~~~i~gVIlTKlD~~~~gG~- 257 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG-Q--QAYNQALAFKE-ATPIGSIIVTKLDGSAKGGG- 257 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG-G--GHHHHHHHHHH-SCTTEEEEEECCSSCSSHHH-
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc-h--hHHHHHHHHHh-hCCCeEEEEECCCCcccccH-
Confidence 679999999932 222222 2234568999999999864 1 22233333332 23445789999998754221
Q ss_pred HHHHHHHHHHhcccCCCCCEEEecccCccchH
Q 039945 267 NQHEAIMKFIQGTVADGAPVVPISAQLKYNID 298 (531)
Q Consensus 267 ~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~ 298 (531)
. ..... ....|+.+++. |++++
T Consensus 258 -~----ls~~~---~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 258 -A----LSAVA---ATGAPIKFIGT--GEKID 279 (443)
T ss_dssp -H----HHHHH---TTCCCEEEEEC--SSSTT
T ss_pred -H----HHHHH---HHCCCEEEEEc--CCChH
Confidence 1 11111 24578888875 77663
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.17 E-value=1.2e-06 Score=86.09 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
...++|+++|.||+|||||+|+|+|..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCc
Confidence 345899999999999999999999863
No 225
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.13 E-value=2.8e-06 Score=86.83 Aligned_cols=101 Identities=14% Similarity=0.045 Sum_probs=65.0
Q ss_pred hhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH-HHHHHcCCceEEEEEeccCCccHHH-HHHHHHHHHHHHhccc
Q 039945 203 HDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL-AAVEIMRLQHIIILQNKVDLIQENV-AINQHEAIMKFIQGTV 280 (531)
Q Consensus 203 ~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l-~~~~~~~~~~iIvviNK~Dl~~~~~-~~~~~~~i~~~l~~~~ 280 (531)
.++|........+.+|++++|+|+++. . ..+. .+.+.++.+|+++|+||+|+.+... .+...+.+...++..+
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~-~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g 130 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDF-N----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG 130 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSH-H----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCC-c----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence 356666655566778899999999753 1 1111 2223345577999999999975431 1222233333343322
Q ss_pred CCCCCEEEecccCccchHHHHHHHHccC
Q 039945 281 ADGAPVVPISAQLKYNIDVVCEYIVKKI 308 (531)
Q Consensus 281 ~~~~~ii~iSa~~g~gi~~L~~~L~~~l 308 (531)
....+++++||++|+|+++|++.|.+..
T Consensus 131 ~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 131 LKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp CCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 2234799999999999999999997543
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.12 E-value=1.6e-06 Score=93.39 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.+..+|+|+|.||+|||||+|+|+|..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 445889999999999999999999864
No 227
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.02 E-value=8.2e-06 Score=75.53 Aligned_cols=112 Identities=7% Similarity=0.039 Sum_probs=63.3
Q ss_pred eEEEEecC------ChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHH----HHH-H--cCCceEEEEEecc-CC
Q 039945 194 HVSFVDCP------GHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLA----AVE-I--MRLQHIIILQNKV-DL 259 (531)
Q Consensus 194 ~i~liDtP------G~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~----~~~-~--~~~~~iIvviNK~-Dl 259 (531)
++..-.+| |+..+...+......+|++|||||+++... ...++.+. ++. . +...|++|+.||. |+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R-~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDl 175 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR-HEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD 175 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCC-CCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTT
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhH-HHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCc
Confidence 45556666 455544455666788999999999987532 23444331 121 1 1224689999995 77
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 260 IQENVAINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
.......++.+.+. |... .....+.++||++|+|+.+-++||.+.+.
T Consensus 176 p~Ams~~EI~e~L~--L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 176 VKRMPCFYLAHELH--LNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp SCBCCHHHHHHHTT--GGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred cCCCCHHHHHHHcC--CcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 65433333322221 1122 24667999999999999999999997664
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.01 E-value=4.9e-06 Score=86.38 Aligned_cols=89 Identities=18% Similarity=0.177 Sum_probs=51.8
Q ss_pred eeEEEEecCChhh------HHHHHHH--hccccCceEEEEeCCCCCCCcchHHHHHHHH-HcCCceEEEEEeccCCccHH
Q 039945 193 RHVSFVDCPGHDI------LMATMLN--GAAIMDGALLLIAANESCPQPQTSEHLAAVE-IMRLQHIIILQNKVDLIQEN 263 (531)
Q Consensus 193 ~~i~liDtPG~~~------~~~~~~~--~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~~~~~iIvviNK~Dl~~~~ 263 (531)
..+.||||||... +...+.. .+..+|.++||+|+..+ ....+.+..+. .++ ...+++||+|.....
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g---q~a~~~a~~f~~~~~--~~gVIlTKlD~~a~~ 254 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG---QKAYDLASRFHQASP--IGSVIITKMDGTAKG 254 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGGHHHHHHHHHHCS--SEEEEEECGGGCSCH
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc---hHHHHHHHHHhcccC--CcEEEEecccccccc
Confidence 6789999999422 3333322 22357999999999864 12233333333 333 367899999986432
Q ss_pred HHHHHHHHHHHHHhcccCCCCCEEEecccCccch
Q 039945 264 VAINQHEAIMKFIQGTVADGAPVVPISAQLKYNI 297 (531)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi 297 (531)
. ....... . ...|+.+++. |+++
T Consensus 255 G--~als~~~-~------~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 255 G--GALSAVV-A------TGATIKFIGT--GEKI 277 (433)
T ss_dssp H--HHHHHHH-H------HTCEEEEEEC--CSSS
T ss_pred h--HHHHHHH-H------HCCCEEEEEC--CCCh
Confidence 1 1111111 1 2468888875 6665
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.93 E-value=2.5e-05 Score=77.29 Aligned_cols=93 Identities=19% Similarity=0.172 Sum_probs=53.9
Q ss_pred eeEEEEecCChhh--H----HHHH--HHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccHHH
Q 039945 193 RHVSFVDCPGHDI--L----MATM--LNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENV 264 (531)
Q Consensus 193 ~~i~liDtPG~~~--~----~~~~--~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~~~ 264 (531)
+.+.||||||... . +..+ +..+..+|.+++|+|+..+ .+..+.+..+.. ..+...+|+||+|......
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-~~~i~gvVlnk~D~~~~~g 256 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-ASKIGTIIITKMDGTAKGG 256 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-TCTTEEEEEECGGGCTTHH
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-hCCCCEEEEeCCCCCcchH
Confidence 6799999999544 2 2111 1234578999999999743 223333333322 2343678999999764321
Q ss_pred HHHHHHHHHHHHhcccCCCCCEEEecccCccchHHH
Q 039945 265 AINQHEAIMKFIQGTVADGAPVVPISAQLKYNIDVV 300 (531)
Q Consensus 265 ~~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~L 300 (531)
.. ..... ....|+.+++ .|+++++|
T Consensus 257 --~~----~~~~~---~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 257 --GA----LSAVA---ATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp --HH----HHHHH---TTTCCEEEEE--CSSSTTCE
T ss_pred --HH----HHHHH---HHCcCEEEEe--CCCChhhc
Confidence 11 11222 2356888776 67777543
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.79 E-value=2.3e-05 Score=77.77 Aligned_cols=88 Identities=20% Similarity=0.166 Sum_probs=56.8
Q ss_pred hccccCceEEEEeCCCCCCCcch-HHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecc
Q 039945 213 GAAIMDGALLLIAANESCPQPQT-SEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISA 291 (531)
Q Consensus 213 ~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa 291 (531)
.+.++|.+++|+|+..+...... ...+..++..+++ .++|+||+|+.+.....+..+.+.+.+.. ...+++++||
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~~~~~~~~~~~~~~y~~---~g~~v~~~sa 158 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQ-PIICITKMDLIEDQDTEDTIQAYAEDYRN---IGYDVYLTSS 158 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCE-EEEEEECGGGCCCHHHHHHHHHHHHHHHH---HTCCEEECCH
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECCccCchhhhHHHHHHHHHHHHh---CCCeEEEEec
Confidence 57899999999999876333221 1222334445655 68999999998764311122333333322 1368999999
Q ss_pred cCccchHHHHHHH
Q 039945 292 QLKYNIDVVCEYI 304 (531)
Q Consensus 292 ~~g~gi~~L~~~L 304 (531)
.+|.|+++|++.+
T Consensus 159 ~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 159 KDQDSLADIIPHF 171 (307)
T ss_dssp HHHTTCTTTGGGG
T ss_pred CCCCCHHHHHhhc
Confidence 9999998876544
No 231
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.78 E-value=9.7e-06 Score=78.79 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.+++++|.+|+|||||+|+|+|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 689999999999999999999864
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.73 E-value=0.00011 Score=79.92 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=39.5
Q ss_pred eeEEEEecCChh------------hHHHHHHHh-ccc-cCceEEEEeCCCCCCCcchHHHHHHHHHc---CCceEEEEEe
Q 039945 193 RHVSFVDCPGHD------------ILMATMLNG-AAI-MDGALLLIAANESCPQPQTSEHLAAVEIM---RLQHIIILQN 255 (531)
Q Consensus 193 ~~i~liDtPG~~------------~~~~~~~~~-l~~-aD~~llVvDa~~~~~~~qt~e~l~~~~~~---~~~~iIvviN 255 (531)
..+.|+|.||.. .-+..++.. +.. ..+++++++++.. .. +.+.+.+++.+ | .+.|+|+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d-~a--~~~~l~la~~v~~~g-~rtI~VlT 222 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD-IA--TTEALSMAQEVDPEG-DRTIGILT 222 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC-TT--TCHHHHHHHHHCSSC-CSEEEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch-hc--cHHHHHHHHHHhhcC-CceEEEec
Confidence 469999999832 223334444 333 3677777777654 22 33344444443 4 45899999
Q ss_pred ccCCccH
Q 039945 256 KVDLIQE 262 (531)
Q Consensus 256 K~Dl~~~ 262 (531)
|.|+++.
T Consensus 223 K~Dlv~~ 229 (608)
T 3szr_A 223 KPDLVDK 229 (608)
T ss_dssp CGGGSSS
T ss_pred chhhcCc
Confidence 9998754
No 233
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.62 E-value=5.6e-05 Score=73.40 Aligned_cols=104 Identities=9% Similarity=0.053 Sum_probs=66.0
Q ss_pred ChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHH----HHH-H--HcCCceEEEEEec-cCCccHHHHHHHHHHHH
Q 039945 202 GHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHL----AAV-E--IMRLQHIIILQNK-VDLIQENVAINQHEAIM 273 (531)
Q Consensus 202 G~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l----~~~-~--~~~~~~iIvviNK-~Dl~~~~~~~~~~~~i~ 273 (531)
|+..+..........+|++|||||+++.... ..++.+ .++ + .+...|++|+.|| .|+.......++.+.+.
T Consensus 196 GQ~~lRplWr~Yy~~tdglIfVVDSsDreRl-eak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~ 274 (312)
T 3l2o_B 196 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRH-EWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 274 (312)
T ss_dssp -CCCCCHHHHHHHHHCSEEEECCBCBTTCCC-CHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCCEEEEEecCCcHhHH-HHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC
Confidence 4455555566677889999999999875322 244322 222 1 1233468999997 58875433333322221
Q ss_pred HHHhcccCCCCCEEEecccCccchHHHHHHHHccCC
Q 039945 274 KFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIP 309 (531)
Q Consensus 274 ~~l~~~~~~~~~ii~iSa~~g~gi~~L~~~L~~~l~ 309 (531)
|... .....+.++||++|+|+.+-++||.+.+.
T Consensus 275 --L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 275 --LNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp --GGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred --CccC-CCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 1122 24567999999999999999999998764
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.56 E-value=0.00031 Score=71.00 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=54.4
Q ss_pred hccccCceEEEEeCCCCCCCcch-HHHHHHHHHcCCceEEEEEeccCCccHHHHHHHHHHHHHHHhcccCCCCCEEEecc
Q 039945 213 GAAIMDGALLLIAANESCPQPQT-SEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIMKFIQGTVADGAPVVPISA 291 (531)
Q Consensus 213 ~l~~aD~~llVvDa~~~~~~~qt-~e~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~iSa 291 (531)
.+.++|.+++| ||..+...... ...+..++..+++ .++|+||+|+.+.... +..+++...+. ....+++++||
T Consensus 127 i~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~~~~-~~~~~~~~~y~---~~G~~v~~~Sa 200 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVE-PLIVLNKIDLLDDEGM-DFVNEQMDIYR---NIGYRVLMVSS 200 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCE-EEEEEECGGGCCHHHH-HHHHHHHHHHH---TTTCCEEECBT
T ss_pred HHhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCC-EEEEEECccCCCchhH-HHHHHHHHHHH---hCCCcEEEEec
Confidence 46889999976 44444222221 1223344556766 5899999999976431 11222223332 23568999999
Q ss_pred cCccchHHHHHHH
Q 039945 292 QLKYNIDVVCEYI 304 (531)
Q Consensus 292 ~~g~gi~~L~~~L 304 (531)
.+|.|+++|...+
T Consensus 201 ~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 201 HTQDGLKPLEEAL 213 (358)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHHhc
Confidence 9999999988765
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.53 E-value=4.4e-05 Score=76.52 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=51.3
Q ss_pred eeEEEEecCChh----hHHHHHH--HhccccCceEEEEeCCCCCCCcchHHHHHHHH-HcCCceEEEEEeccCCccHHHH
Q 039945 193 RHVSFVDCPGHD----ILMATML--NGAAIMDGALLLIAANESCPQPQTSEHLAAVE-IMRLQHIIILQNKVDLIQENVA 265 (531)
Q Consensus 193 ~~i~liDtPG~~----~~~~~~~--~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~~~~~iIvviNK~Dl~~~~~~ 265 (531)
..+.++||+|.. .+...+. ..+-.+|-.++++|+..+ .+..+.+..+. .+++ -++++||+|......
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~~i--t~iilTKlD~~a~~G- 285 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAVKI--DGIILTKLDADARGG- 285 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHSCC--CEEEEECGGGCSCCH-
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhcCC--CEEEEeCcCCccchh-
Confidence 467889999942 2332221 122347999999998754 22333333332 3453 378899999743211
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEecccCccchHH
Q 039945 266 INQHEAIMKFIQGTVADGAPVVPISAQLKYNIDV 299 (531)
Q Consensus 266 ~~~~~~i~~~l~~~~~~~~~ii~iSa~~g~gi~~ 299 (531)
........ ...|+.+++ +|+++++
T Consensus 286 -~~l~~~~~-------~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 286 -AALSISYV-------IDAPILFVG--VGQGYDD 309 (328)
T ss_dssp -HHHHHHHH-------HTCCEEEEE--CSSSTTC
T ss_pred -HHHHHHHH-------HCCCEEEEe--CCCCccc
Confidence 11111111 246888887 7777753
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.32 E-value=0.00017 Score=75.04 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=38.0
Q ss_pred eeEEEEecCChhhH----HHHH--HHhccccCceEEEEeCCCCCCCcchHHHHHHHH-HcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHDIL----MATM--LNGAAIMDGALLLIAANESCPQPQTSEHLAAVE-IMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~~~----~~~~--~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~-~~~~~~iIvviNK~Dl~~ 261 (531)
+.+.||||||...+ ...+ ...+..+|.+++|+|+..+ . .....+..+. .+++ .-+++||+|...
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g-~--~~~~~~~~f~~~l~i--~gvVlnK~D~~~ 254 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG-Q--DAANTAKAFNEALPL--TGVVLTKVDGDA 254 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC-T--THHHHHHHHHHHSCC--CCEEEECTTSSS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh-H--HHHHHHHHHhccCCC--eEEEEecCCCCc
Confidence 68999999995322 2211 1224578999999999764 2 1222222222 2332 346899999753
No 237
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.23 E-value=0.00045 Score=55.50 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=64.9
Q ss_pred EEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEEecCc
Q 039945 321 MIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFAVPGG 400 (531)
Q Consensus 321 ~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a~aG~ 400 (531)
..|..+|.+++ .|+|+..+|..|.++.+..+.+.-.+ ... ...++.||.++..++.++.+|.
T Consensus 9 AeVr~vF~isk--------~g~IAGc~V~~G~i~r~~~vRv~Rd~-------~vI---~eG~i~SLkr~KddV~EV~~G~ 70 (99)
T 1d1n_A 9 AEVRQTFKVSK--------VGTIAGCYVTDGKITRDSKVRLIRQG-------IVV---YEGEIDSLKRYKDDVREVAQGY 70 (99)
T ss_dssp EEECCCCCCSS--------SCCCEEEEECSSBCCSSSEEEEECSS-------SEE---EEEECSEEECSSSCCSCCBTTC
T ss_pred EEEEEEEEcCC--------ceEEEEEEEEcCEEEcCCeEEEEECC-------EEE---EEeEEhhhcccccccceECCCc
Confidence 44566676654 78999999999999999999998643 222 3578999999999999999999
Q ss_pred eEEEeeecCccccccccccceee
Q 039945 401 LIGVGTTMDPTLTRADRLVGQVL 423 (531)
Q Consensus 401 ~v~i~l~~~~~~~~~~i~~G~vl 423 (531)
-|++.+. +. .|+..|+++
T Consensus 71 ECGi~l~---~~--~dik~GD~I 88 (99)
T 1d1n_A 71 ECGLTIK---NF--NDIKEGDVI 88 (99)
T ss_dssp EEEEECT---TC--SSCSSCSEE
T ss_pred EEEEEEc---Cc--CCCCCCCEE
Confidence 9999876 33 478889887
No 238
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.11 E-value=0.002 Score=53.56 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=66.0
Q ss_pred EEEEEEeeeecCCCCcccCCCce---EEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeecccceeEE
Q 039945 320 NMIVIRSFDVNKPGFEVDDIRGG---VAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQFA 396 (531)
Q Consensus 320 ~~~i~~~~~v~~~~~~~~~~~G~---v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~~a 396 (531)
+..|..+|.+++ .|. |+..+|..|.|+.+..+.+.-.+ ... ...++.||.++..++.++
T Consensus 12 ~AeVr~vF~isk--------~g~~~~IAGC~V~~G~i~r~~~vRviRdg-------~vI---~eG~i~SLkrfKdDVkEV 73 (120)
T 2crv_A 12 EASILATFTVTE--------GKKKIPVADCRVQKGQLERHKKFKLIRNG-------QVI---WKGSLTSLKHHKDDISVI 73 (120)
T ss_dssp EEEEEEEEEEEE--------TTEEEEEEEEEEEESCEETTSCEEEEETT-------EEE---EEECCSEEESSSSCCSEE
T ss_pred EEEEeEEEEeCC--------CCceeEEeEEEEEcCEEEcCCeEEEEECC-------EEE---EEeEehhhccccccccee
Confidence 456788888865 566 99999999999999999988653 222 356899999999999999
Q ss_pred ecCceEEEeeecCcccccc-ccccceee
Q 039945 397 VPGGLIGVGTTMDPTLTRA-DRLVGQVL 423 (531)
Q Consensus 397 ~aG~~v~i~l~~~~~~~~~-~i~~G~vl 423 (531)
.+|.-|++.+. + .. |+..|+++
T Consensus 74 ~~G~ECGi~l~---~--fniDik~GDiI 96 (120)
T 2crv_A 74 KTGMDCGLSLD---E--EKVEFKPGDQV 96 (120)
T ss_dssp CTTCEEEEECS---C--TTSCCCTTEEE
T ss_pred cCCCEEEEEEc---c--CCCCCCCCCEE
Confidence 99999999875 3 34 78889887
No 239
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.97 E-value=0.0016 Score=68.24 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..-.|+|+|..|+|||||++.|.|.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4457899999999999999999853
No 240
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.88 E-value=0.0037 Score=66.02 Aligned_cols=102 Identities=21% Similarity=0.157 Sum_probs=73.8
Q ss_pred HHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeec
Q 039945 298 DVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCT 377 (531)
Q Consensus 298 ~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~ 377 (531)
+++.+++...+++. ....---...|..+|.+++ .|.|+..+|..|+|+.|..+.+... |.+.
T Consensus 389 ~~~~~~~~~~~~~~-~~~~~~g~a~v~~~f~~~~--------~~~iaG~~v~~G~~~~~~~~~~~r~-------~~~i-- 450 (501)
T 1zo1_I 389 DEVKAAMSGMLSPE-LKQQIIGLAEVRDVFKSPK--------FGAIAGCMVTEGVVKRHNPIRVLRD-------NVVI-- 450 (501)
T ss_dssp HHTHHHHTTTSSTT-CCCCCCCCEEEEECSSCCC--------SSCEEEEEEEEEEEETTCEEECCSS-------SCCC--
T ss_pred HHHHHHHHhhcCce-eeeeeeeEEEEEEEEecCC--------CCEEEEEEEEeCEEecCCeEEEEeC-------CeEE--
Confidence 45555666555432 2222223455667786643 6899999999999999999998643 2221
Q ss_pred cceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceee
Q 039945 378 PIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVL 423 (531)
Q Consensus 378 ~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl 423 (531)
...+|.||++++.+++++..|+-|++.+. +. .++..|+++
T Consensus 451 -~~g~i~sl~~~k~~v~e~~~g~ecgi~~~---~~--~~~~~gd~~ 490 (501)
T 1zo1_I 451 -YEGELESLRRFKDDVNEVRNGMECGIGVK---NY--NDVRTGDVI 490 (501)
T ss_dssp -EEEEBCCEEETTEEESEEETTCCEEEEBC---CC--TTCCTTCEE
T ss_pred -EEEEEehhcccCccccEECCCCEEEEEEc---Cc--CCCCCCCEE
Confidence 35789999999999999999999999876 33 378888887
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.84 E-value=0.001 Score=65.59 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
...|+++|..|+||||++..|.+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999753
No 242
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.79 E-value=0.003 Score=65.65 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.+..-|+|+|.+++|||||+|+|+|.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45578999999999999999999864
No 243
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.78 E-value=0.003 Score=62.93 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
.+...|+++|.+|+||||++..|.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445789999999999999999874
No 244
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.70 E-value=0.0015 Score=64.66 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
+.-.|+++|+.|||||||++.|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457899999999999999999753
No 245
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.57 E-value=0.0021 Score=63.63 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
+...|+++|.+|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345689999999999999999974
No 246
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.40 E-value=0.0064 Score=55.77 Aligned_cols=64 Identities=9% Similarity=0.026 Sum_probs=46.3
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC----ceEEEEEeccCCc
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL----QHIIILQNKVDLI 260 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~----~~iIvviNK~Dl~ 260 (531)
+.+.+||||+... ..+...+..+|.+++++..+.. . ......+..++.++. .++.+|+|++|..
T Consensus 76 yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 76 YDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 6799999998652 3445566779999999998765 4 555666667765541 2468999999954
No 247
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.38 E-value=0.016 Score=61.71 Aligned_cols=107 Identities=15% Similarity=0.246 Sum_probs=80.6
Q ss_pred hHHHHHHHHccCCCCCCCCCCCCEEEEEEeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceee
Q 039945 297 IDVVCEYIVKKIPIPERNFIDPPNMIVIRSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKC 376 (531)
Q Consensus 297 i~~L~~~L~~~l~~~~~~~~~~~~~~i~~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~ 376 (531)
++++.++|...+++. ....-.-...|...|.+++ + ...|.|++.+|..|+|+.|..+.+.-. |...
T Consensus 427 ~~~~~~~~~~~l~~~-~~e~~~g~a~v~~~f~~~~-~----~~~~~iaG~~v~~G~i~~~~~~r~~r~-------~~~i- 492 (537)
T 3izy_P 427 IEDLQEELSSRLPCI-VEEHPIGEASILATFSITE-G----KKKVPVAGCRVQKGQIEKQKKFKLIRN-------GHVI- 492 (537)
T ss_dssp HHHHHHHHSSSSSCS-SSCCCSSEEEEEEEESSCS-S----SCCSCEEEEEECSSEEESSSEEEEESS-------SSEE-
T ss_pred HHHHHHHHHhccCCc-eEEEEEEEEEEcCcEEECC-C----CccCcEEEEEEEeCeEeeCCeEEEecC-------CEEE-
Confidence 578888888766643 2223335788888898753 1 115799999999999999999998754 3322
Q ss_pred ccceeeeEEeeecccceeEEecCceEEEeeecCccccccccccceee
Q 039945 377 TPIYSRIVSLFAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVL 423 (531)
Q Consensus 377 ~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~~~~i~~G~vl 423 (531)
...+|.||.++..++.++..|.-|++.+. +. ..++..|+++
T Consensus 493 --~~g~i~slk~~k~~v~ev~~g~ecgi~~~---~~-~~~~~~gd~i 533 (537)
T 3izy_P 493 --WKGSLISLKHHKDDTSVVKTGMDCGLSLD---EE-KIEFKVGDAI 533 (537)
T ss_dssp --EEEECCCCCCSSCCCSEEETTCEEEEESS---SS-CSSCSCCCEE
T ss_pred --EEEEEehhcccCcccceEcCCCEEEEEEc---Cc-ccCCCCCCEE
Confidence 35789999999999999999999999876 31 2378889887
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.30 E-value=0.003 Score=65.29 Aligned_cols=64 Identities=23% Similarity=0.203 Sum_probs=37.5
Q ss_pred eeEEEEecCChh----hHHHHH--HHhccccCceEEEEeCCCCCCCcchHHHHHHH-HHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHD----ILMATM--LNGAAIMDGALLLIAANESCPQPQTSEHLAAV-EIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~----~~~~~~--~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~-~~~~~~~iIvviNK~Dl~~ 261 (531)
+.+.||||||.. ..+..+ +..+..+|.++||+|+..+ ......+... ..++ ..-+++||+|...
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l~--i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKVG--VTGLVLTKLDGDA 251 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHTC--CCEEEEESGGGCS
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcCC--ceEEEEeCcCCcc
Confidence 679999999942 123222 1223468999999999753 1122222222 2233 2467899999753
No 249
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.70 E-value=0.0046 Score=55.98 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
++++++|++|+|||||++.|+|..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 250
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=95.40 E-value=0.047 Score=58.89 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=63.6
Q ss_pred CCCEEEEE--EeeeecCCCCcccCCCceEEEEEEEeeeeccCCEEEEecCceecCCCCceeeccceeeeEEeeeccccee
Q 039945 317 DPPNMIVI--RSFDVNKPGFEVDDIRGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLFAEQNELQ 394 (531)
Q Consensus 317 ~~~~~~i~--~~~~v~~~~~~~~~~~G~v~~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~V~si~~~~~~v~ 394 (531)
.|..+.|. .+|.++ .|.|+..+|..|+|+.|..+.+ +.+ . ...+|.||++++.+++
T Consensus 462 ~~~~~~i~~~~~f~~~---------~~~i~g~~v~~G~~~~~~~~~~-~~~-------~-----~~g~i~sl~~~k~~v~ 519 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQS---------KPAIGGVEVLTGVIRQGYPLMN-DDG-------E-----TVGTVESMQDKGENLK 519 (594)
T ss_dssp CCEEEEEEEEEEEECS---------SSEEEEEEEEEEEEETTCEEEC-TTS-------C-----EEEEEEEEEETTEEES
T ss_pred eeEEEEEecceEEcCC---------CCeEEEEEEecCEEecCCeEEe-cCC-------c-----EEEEEehhcccCcccc
Confidence 34455444 467553 4799999999999999999987 432 2 3579999999999999
Q ss_pred EEecCceEEEeeecCcccc-ccccccceee
Q 039945 395 FAVPGGLIGVGTTMDPTLT-RADRLVGQVL 423 (531)
Q Consensus 395 ~a~aG~~v~i~l~~~~~~~-~~~i~~G~vl 423 (531)
+|..|+-|++.+. +.. -.++..|++|
T Consensus 520 ~~~~g~e~gi~~~---~~~~~~~~~~~d~~ 546 (594)
T 1g7s_A 520 SASRGQKVAMAIK---DAVYGKTIHEGDTL 546 (594)
T ss_dssp EEETTCCEEEEEE---TCCBTTTBCTTCEE
T ss_pred ccCCCCEEEEEEe---CcccCCCCCCCCEE
Confidence 9999999999886 322 2578888887
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.26 E-value=0.0069 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..++|+|++|+|||||++.|+|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 252
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.04 E-value=0.011 Score=59.46 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|++|+|||||+|+|+|..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 468999999999999999999864
No 253
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.99 E-value=0.011 Score=54.53 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
++...|+|+|..|||||||++.|.|.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999874
No 254
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.97 E-value=0.01 Score=54.89 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|||||||++.|.|..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999999853
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.96 E-value=0.011 Score=54.55 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.+...|+|+|++|+|||||++.|.|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999865
No 256
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.95 E-value=0.012 Score=53.12 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..++|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999874
No 257
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.93 E-value=0.014 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
...|+++|.+|+|||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999999986
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.74 E-value=0.014 Score=55.39 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|||||||++.|.|..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999999864
No 259
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.73 E-value=0.015 Score=53.22 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
-.++++|++|||||||++.|.|.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999999875
No 260
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.63 E-value=0.014 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-++|+|++|||||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37999999999999999998753
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.61 E-value=0.014 Score=54.49 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|++|+|||||++.|+|..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999999853
No 262
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.60 E-value=0.014 Score=54.77 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357999999999999999999864
No 263
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.60 E-value=0.008 Score=59.37 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
+...++++|++|+|||||+|+|+|..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 34578999999999999999999853
No 264
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.51 E-value=0.018 Score=54.70 Aligned_cols=23 Identities=26% Similarity=0.409 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.++++|+.|+|||||++.|.|..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999874
No 265
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.37 E-value=0.02 Score=52.54 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=21.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
.+...|+|+|.+|+|||||++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999975
No 266
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.36 E-value=0.019 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.++|+|+.|+|||||++.|+|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 267
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.35 E-value=0.02 Score=54.22 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|+|||||++.|+|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999874
No 268
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.35 E-value=0.02 Score=53.64 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.--++|+|+.|||||||++.|+|..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3568999999999999999999854
No 269
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.33 E-value=0.019 Score=55.14 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|+|..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999864
No 270
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.31 E-value=0.024 Score=50.11 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
+.-.++++|+.|+|||||++.|.|.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999875
No 271
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.30 E-value=0.019 Score=55.41 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999999864
No 272
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.29 E-value=0.019 Score=55.28 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|+|||||++.|+|..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999999864
No 273
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.28 E-value=0.16 Score=49.72 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=40.3
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc----CCceEEEEEeccCC
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM----RLQHIIILQNKVDL 259 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~----~~~~iIvviNK~Dl 259 (531)
+.+.|||||+.... ..+...+..+|.+|+|+.++.. ........+..++.+ +.+.+-+|+|+++.
T Consensus 157 yD~ViiD~p~~~~~-~~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 157 TDVVIFDVLGDVVC-GGFAAPLQHADQAVVVTANDFD-SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp CSEEEEEECCSSCC-GGGGGGGGTCSEEEEEECSSHH-HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred CCEEEEeCCCccch-HHHHHHHHHCCEEEEEecCcHH-HHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 68999999984321 1123456889999999987642 122233444555543 23323389999984
No 274
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.27 E-value=0.022 Score=53.74 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|+|||||++.|+|..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999874
No 275
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.25 E-value=0.02 Score=55.61 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|||||||++.|+|..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999999864
No 276
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.23 E-value=0.023 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
-.++|+|+.|+|||||++.|+|.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999995
No 277
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.23 E-value=0.023 Score=51.99 Aligned_cols=25 Identities=32% Similarity=0.179 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
...|+|+|.+|||||||++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999998754
No 278
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.22 E-value=0.028 Score=51.62 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
...-|+|+|++|+|||||+++|++.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3456899999999999999999864
No 279
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.22 E-value=0.021 Score=56.23 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.-.++++|++|+|||||+|+|.|..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3468999999999999999999864
No 280
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.21 E-value=0.023 Score=54.27 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|+|||||++.|+|..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999999864
No 281
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.20 E-value=0.021 Score=54.21 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999864
No 282
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.18 E-value=0.021 Score=50.99 Aligned_cols=22 Identities=32% Similarity=0.226 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
--++++|++|||||||++.+.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 4589999999999999998764
No 283
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.11 E-value=0.022 Score=54.88 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|+|||||++.|.|..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 458999999999999999999864
No 284
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.09 E-value=0.025 Score=54.47 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
+.-.++|+|+.|+|||||++.|+|..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33468999999999999999999864
No 285
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.08 E-value=0.027 Score=53.53 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999999864
No 286
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.07 E-value=0.023 Score=54.56 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|+|||||++.|+|..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999999864
No 287
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.02 E-value=0.026 Score=53.95 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358999999999999999999974
No 288
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.98 E-value=0.029 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
-.++|+|+.|+|||||++.|+|.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999996
No 289
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.95 E-value=0.3 Score=50.45 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
.+..-|+|+|..++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 466788999999999999999765
No 290
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.94 E-value=0.021 Score=53.04 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.++++|+.|+|||||++.|+|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
No 291
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.91 E-value=0.028 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|+|||||++.|+|..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999864
No 292
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.88 E-value=0.027 Score=55.45 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.+.-.++|+|++|+|||||++.|+|.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 44457899999999999999999875
No 293
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.88 E-value=0.026 Score=54.46 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|+|||||++.|.|..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999999864
No 294
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.86 E-value=0.028 Score=54.63 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|+|||||++.|+|..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358999999999999999999864
No 295
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.82 E-value=0.027 Score=53.96 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999874
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.80 E-value=0.035 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
...|+++|.+|+|||||.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.76 E-value=0.027 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..|+++|.+|+|||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999763
No 298
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.72 E-value=0.033 Score=54.82 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
....++++|++|+|||||+|+|+ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 34568999999999999999998 53
No 299
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.59 E-value=0.035 Score=54.91 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.+...|+|+|.+|||||||++.|.|.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44567999999999999999999874
No 300
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.58 E-value=0.041 Score=50.77 Aligned_cols=25 Identities=28% Similarity=0.177 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
..-|+|+|++|+|||||++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998753
No 301
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.50 E-value=0.03 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.++++|++|+|||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4799999999999999999864
No 302
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.48 E-value=0.041 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH---CCC
Q 039945 106 INIGTIGHVAHGKSTVVKAIS---GVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~---g~~ 129 (531)
..|+|+|.+|||||||++.|. |..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 579999999999999999998 753
No 303
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.46 E-value=0.037 Score=53.32 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|+|..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999999974
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.46 E-value=0.04 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
+.-.++|+|++|+|||||++.|+|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3456899999999999999999875
No 305
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.37 E-value=0.041 Score=49.70 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
.++++|.+|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999975
No 306
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.25 E-value=0.032 Score=54.97 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.+.-.++|+|+.|+|||||++.|+|..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 344578999999999999999999864
No 307
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.24 E-value=0.022 Score=51.06 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.++|+|.+|+|||||++.|++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 308
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.23 E-value=0.042 Score=55.43 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|||||||++.|.|..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 458999999999999999999864
No 309
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.22 E-value=0.04 Score=53.88 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
+.-.++|+|+.|+|||||++.|+|..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34468999999999999999999874
No 310
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.21 E-value=0.045 Score=51.90 Aligned_cols=24 Identities=42% Similarity=0.476 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
+...|+|+|..|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999975
No 311
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.15 E-value=0.049 Score=49.80 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=22.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.+...|+|+|.+|+|||||.+.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999999754
No 312
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.08 E-value=0.046 Score=50.16 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
...|+++|.+|||||||.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999753
No 313
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.99 E-value=0.059 Score=49.35 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
+.|+++|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.93 E-value=0.035 Score=52.02 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=16.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH-CCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAIS-GVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~-g~~ 129 (531)
...++|+|++|||||||++.|. +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3568999999999999999999 753
No 315
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.90 E-value=0.064 Score=49.21 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
....|+|+|.+|+|||||.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999875
No 316
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.87 E-value=0.055 Score=47.58 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAI 125 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L 125 (531)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 317
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.87 E-value=0.049 Score=54.86 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
--++++|+.|+|||||++.|.|..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357999999999999999999864
No 318
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.86 E-value=0.042 Score=51.00 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
--++|+|++|+|||||++.|+|.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999873
No 319
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.86 E-value=0.048 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..|+|+|.+|+||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 320
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.86 E-value=0.052 Score=54.62 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357999999999999999999864
No 321
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.82 E-value=0.047 Score=49.92 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999976
No 322
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.78 E-value=0.058 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.048 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..|+|+|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999963
No 323
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.78 E-value=0.054 Score=54.61 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 357999999999999999999864
No 324
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.77 E-value=0.057 Score=48.51 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..++++|.+|+|||||+++|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45899999999999999999864
No 325
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.65 E-value=0.057 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 357999999999999999999864
No 326
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.65 E-value=0.057 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357999999999999999999864
No 327
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.63 E-value=0.047 Score=55.15 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.-+++|+|..|+|||||++.|.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998754
No 328
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.59 E-value=0.059 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.++++|+.|+|||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57999999999999999999864
No 329
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.58 E-value=0.051 Score=54.88 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
+.-.++|+|.+|+|||||+++|++..
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 44578999999999999999999864
No 330
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.50 E-value=0.061 Score=54.50 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 457999999999999999999864
No 331
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.50 E-value=0.079 Score=47.44 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 039945 105 TINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
...|+++|.+||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999996
No 332
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.49 E-value=0.072 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
...|+++|.+|+||||+.+.|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 333
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.49 E-value=0.044 Score=54.67 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.-.++++|++|+|||||++.|+|..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999864
No 334
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.48 E-value=0.062 Score=50.56 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~ 126 (531)
-.++++|++|+|||||++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 457999999999999999988
No 335
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.40 E-value=0.071 Score=48.39 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999974
No 336
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.40 E-value=0.077 Score=50.57 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 039945 105 TINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
...|+|+|.+|||||||++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 337
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.36 E-value=0.069 Score=48.53 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 039945 108 IGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 108 V~iiG~~~~GKSTLi~~L~g~ 128 (531)
|+|+|++|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999854
No 338
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.31 E-value=0.24 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
....|.++|.+++||||+.+.|..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999963
No 339
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.28 E-value=0.052 Score=54.52 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 357999999999999999999864
No 340
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.26 E-value=0.083 Score=46.87 Aligned_cols=22 Identities=36% Similarity=0.296 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 341
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.25 E-value=0.073 Score=48.59 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..|+|+|.+|||||||.+.|.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 342
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.24 E-value=0.067 Score=52.68 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.....|+|+|.+|+|||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999863
No 343
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.23 E-value=0.086 Score=47.44 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..+|+++|.+|+||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999964
No 344
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.22 E-value=0.062 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
-.|+|+|++|+|||||+++|+|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999874
No 345
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.15 E-value=0.076 Score=48.97 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~ 126 (531)
++|+|+|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999995
No 346
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.14 E-value=0.06 Score=48.19 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
...++++|++|+|||||++++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999864
No 347
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.12 E-value=0.089 Score=49.43 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=46.5
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCC
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDL 259 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl 259 (531)
.+.+.|||||+.-.. .+...+..+|.+|+|+.++.. ..........++..++.+.+.+++||.+.
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLN-SIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHH-HHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHH-HHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 478999999985432 344556889999999998643 22233444566777787778899999983
No 348
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.09 E-value=0.17 Score=48.20 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=46.7
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCccH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQE 262 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~~ 262 (531)
+.+.|||||+... ......+..+|.+|+|+.++.. ........+..++..+.+.+-+|+|++|....
T Consensus 111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~ 177 (263)
T 1hyq_A 111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEIS-SITDGLKTKIVAERLGTKVLGVVVNRITTLGI 177 (263)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHH-HHHHHHHHHHHHHHHTCEEEEEEEEEECTTTH
T ss_pred CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChh-HHHHHHHHHHHHHhcCCCeeEEEEccCCcccc
Confidence 6799999998543 3345566789999999987643 22234445566666676767799999986543
No 349
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.07 E-value=0.077 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
....|+|+|.+|+|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999975
No 350
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.96 E-value=0.082 Score=48.76 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~ 126 (531)
++|+|+|.++|||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999996
No 351
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.93 E-value=0.098 Score=47.04 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
...|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999963
No 352
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.86 E-value=0.093 Score=48.61 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..++|+++|.+||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999963
No 353
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.80 E-value=0.095 Score=46.98 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999963
No 354
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.80 E-value=0.051 Score=54.69 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357999999999999999999864
No 355
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.79 E-value=0.063 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
-.++++|++|+|||||++++.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 356
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.73 E-value=0.081 Score=53.94 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|+|||||++.|.|..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 458999999999999999999864
No 357
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.70 E-value=0.14 Score=47.78 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=47.2
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
.+.+.+||||+... ..+...+..+|.+|+|+.++.. ........+..++..+.+.+-+|+|++|...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEIS-CLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHH-HHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcc-cHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 36799999998543 3345567889999999987643 2233445556666667777788999998643
No 358
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.68 E-value=0.095 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.112 Sum_probs=20.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH
Q 039945 104 ATINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
+...|+|.|.+||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999996
No 359
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.67 E-value=0.2 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
...-|+++|.+|||||||.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999964
No 360
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.65 E-value=0.099 Score=46.90 Aligned_cols=22 Identities=27% Similarity=0.122 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..|+|.|.+|+||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 361
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.65 E-value=0.097 Score=51.87 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=21.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
....-|+|+|.+|||||||++.|.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999998643
No 362
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.64 E-value=0.1 Score=47.43 Aligned_cols=24 Identities=25% Similarity=0.051 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999754
No 363
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.63 E-value=0.07 Score=56.50 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
..+++|+|++|||||||+++|+|..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999999854
No 364
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.62 E-value=0.089 Score=53.32 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.+.-.++|+|++|+|||||++.|++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34457999999999999999999874
No 365
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.52 E-value=0.11 Score=47.47 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999963
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.50 E-value=0.12 Score=46.34 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
+...|+++|.+|+||||+.+.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999964
No 367
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.49 E-value=0.079 Score=49.66 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.+..-|+|.|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567999999999999999999764
No 368
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.47 E-value=0.11 Score=46.34 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..++++|.+|+|||||+.+|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999753
No 369
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.46 E-value=0.11 Score=46.50 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~ 126 (531)
.+|+++|.+|+||||+.+.|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999996
No 370
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.45 E-value=0.1 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..|.++|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999974
No 371
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.24 E-value=0.13 Score=46.00 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~ 126 (531)
..|++.|.++|||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
No 372
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.23 E-value=0.12 Score=45.99 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
...|+++|.+|+||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999965
No 373
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.22 E-value=0.28 Score=46.76 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=43.1
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCC
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDL 259 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl 259 (531)
.+.+.|||||+...........+..+|.+|+|+..... ........+..++..+.+.+-+|+|+.|.
T Consensus 128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQEL-TAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSC-CHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccc-hHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 36799999998543211112223368999999988764 23344555666676776644489999874
No 374
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.20 E-value=0.11 Score=45.51 Aligned_cols=20 Identities=45% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 039945 107 NIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~ 126 (531)
+|++.|.++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 375
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.20 E-value=0.13 Score=46.69 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
....|+|+|.++|||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3467999999999999999999753
No 376
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.11 E-value=0.13 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~ 126 (531)
..|+++|.++|||||+.+.|.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
No 377
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.07 E-value=0.14 Score=49.93 Aligned_cols=25 Identities=24% Similarity=0.088 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
....|+|+|.+|+|||||++.|.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999998753
No 378
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.06 E-value=0.13 Score=46.44 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 039945 105 TINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
...|+++|.+||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999986
No 379
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.96 E-value=0.12 Score=47.29 Aligned_cols=23 Identities=30% Similarity=0.082 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
...|++.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999963
No 380
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.91 E-value=0.15 Score=48.32 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
...++|+|.|.+||||||+...|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999996
No 381
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.84 E-value=0.12 Score=55.08 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 382
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.84 E-value=0.12 Score=47.55 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
++|+|.|.++|||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999963
No 383
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.80 E-value=0.16 Score=46.27 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH
Q 039945 104 ATINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
..+.|+++|.+++||||+.+.|.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999986
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.77 E-value=0.13 Score=50.55 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
+.-.++++|..|+|||||++.|.|.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999854
No 385
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.69 E-value=0.1 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..++|+|..|||||||++.|++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 46799999999999999999975
No 386
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.62 E-value=0.1 Score=54.44 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
...-.++|+|+.|+|||||++.|+|..
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 345679999999999999999999764
No 387
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.56 E-value=0.18 Score=45.87 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
....|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999963
No 388
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.55 E-value=0.14 Score=45.95 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 389
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.55 E-value=0.14 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 039945 105 TINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
...|+|+|.+||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999996
No 390
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.55 E-value=0.16 Score=46.92 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999964
No 391
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.54 E-value=0.13 Score=45.91 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
-.+|+|+.++|||||+.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999964
No 392
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.53 E-value=0.13 Score=52.87 Aligned_cols=25 Identities=28% Similarity=0.064 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
+.-.++|+|++|+|||||+++|++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3346899999999999999999874
No 393
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.51 E-value=0.13 Score=45.66 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
+|+|+|.+|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999963
No 394
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.44 E-value=0.14 Score=45.66 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~ 126 (531)
.+|+++|.+|+||||+.+.|.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 568999999999999999996
No 395
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.39 E-value=0.12 Score=55.10 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|+|..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999999864
No 396
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.35 E-value=0.26 Score=45.35 Aligned_cols=66 Identities=8% Similarity=-0.038 Sum_probs=44.8
Q ss_pred eeEEEEecCCh-hhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGH-DILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~-~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
+.+.+||||+. ... .+...+..+|.+|+++..+.. ........+..++.+...++.+++|++|...
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDAL-ALDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 67999999986 432 234456789999999998653 2233444555666542234789999999754
No 397
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.22 E-value=0.12 Score=49.84 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 039945 108 IGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 108 V~iiG~~~~GKSTLi~~L~g~ 128 (531)
++++|++|+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999874
No 398
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.12 E-value=0.12 Score=54.05 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
.++|+|+.|+|||||++.|.|
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999985
No 399
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.93 E-value=0.15 Score=55.13 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++++|+.|+|||||++.|.|..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 468999999999999999999864
No 400
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.90 E-value=0.16 Score=47.14 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~ 126 (531)
..|+|+|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999996
No 401
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.84 E-value=0.14 Score=47.29 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
-.++++|++|+|||||+..|++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35799999999999999999853
No 402
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.82 E-value=0.09 Score=48.21 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
-|+|.|.+|||||||++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999999974
No 403
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.77 E-value=0.17 Score=46.80 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 039945 105 TINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
.++|+++|.++|||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999995
No 404
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.76 E-value=0.18 Score=45.43 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999963
No 405
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.70 E-value=0.14 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
+.-+++|+|..|+|||||++.|+|.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999975
No 406
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.67 E-value=0.17 Score=54.43 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
++.-.++++|+.|+|||||++.|+|..
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444578999999999999999999864
No 407
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.64 E-value=0.19 Score=46.76 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 039945 107 NIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~ 126 (531)
.|+|.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999996
No 408
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.61 E-value=0.18 Score=45.45 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..|+++|.++|||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999963
No 409
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.57 E-value=0.42 Score=46.38 Aligned_cols=67 Identities=9% Similarity=0.013 Sum_probs=48.6
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCcc
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQ 261 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~~ 261 (531)
+.+.|||||..-... .....+..+|.+|+|+.+... ........+..++..+.+.+-+|+|++|...
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 579999999964322 233345779999999998764 3444556667788888777778999998643
No 410
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.57 E-value=0.2 Score=46.24 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
++|.++|.|||||+|+...|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 411
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.56 E-value=0.16 Score=54.73 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
++.-.++++|+.|+|||||++.|.|..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 344578999999999999999999864
No 412
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.53 E-value=0.14 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.089 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
--++|+|++|+|||||+..|++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 45799999999999999999864
No 413
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.50 E-value=0.2 Score=44.10 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~ 126 (531)
-+|+|.|.+||||||+.+.|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
No 414
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.47 E-value=0.2 Score=48.73 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
...|.++|.+|||||||.+.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999974
No 415
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.46 E-value=0.16 Score=48.20 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.++++|++|+|||||+++|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999864
No 416
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.43 E-value=0.14 Score=45.51 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=15.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~ 126 (531)
..|.+.|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999996
No 417
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.42 E-value=0.17 Score=54.76 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|+|||||++.|.|..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 468999999999999999999864
No 418
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.40 E-value=0.22 Score=45.37 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHH
Q 039945 103 QATINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
.-+..|+++|.++|||||+.+.|.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999985
No 419
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.39 E-value=0.21 Score=47.37 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=20.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..+.|+|.|.++|||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999853
No 420
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.36 E-value=0.21 Score=47.71 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999964
No 421
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.22 E-value=0.24 Score=45.50 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
.....|+++|.+|+||||+.+.|.+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999865
No 422
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.21 E-value=0.16 Score=48.25 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
....|.++|.+||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999974
No 423
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.21 E-value=0.21 Score=43.39 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 039945 108 IGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 108 V~iiG~~~~GKSTLi~~L~ 126 (531)
.+|+|+.++|||||+.+|.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999985
No 424
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.17 E-value=0.2 Score=50.40 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
+.-.++++|..|+|||||++.|.|.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4457899999999999999999853
No 425
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.11 E-value=0.24 Score=46.37 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..+|+|+|.+++||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999963
No 426
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.08 E-value=0.2 Score=53.31 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|..|+|||||++.|+|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 427
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.07 E-value=0.19 Score=44.25 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~ 126 (531)
..|++.|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999985
No 428
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=88.95 E-value=0.28 Score=45.91 Aligned_cols=67 Identities=12% Similarity=0.057 Sum_probs=46.5
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcC--CceEEEEEeccCCcc
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMR--LQHIIILQNKVDLIQ 261 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~--~~~iIvviNK~Dl~~ 261 (531)
.+.+.|||||+.... .....+..+|.+++++..+.. ........+..++..+ ...+-+|+|++|...
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQ-SLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHH-HHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHH-HHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 368999999985422 344567789999999998643 2233445556666666 345789999998653
No 429
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.95 E-value=0.16 Score=54.94 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
++.-.++++|+.|+|||||++.|+|..
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 344578999999999999999999864
No 430
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.79 E-value=0.19 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|+|||||++.|+|..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999864
No 431
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.75 E-value=0.21 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
.+|+|+|.+|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999964
No 432
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.74 E-value=0.2 Score=44.78 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 039945 107 NIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~ 126 (531)
.|+|+|.+||||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999985
No 433
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.67 E-value=0.17 Score=54.59 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
++.-.++++|+.|+|||||++.|+|..
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 444578999999999999999999864
No 434
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.59 E-value=0.29 Score=45.88 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
....|+|.|.+|+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999753
No 435
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.56 E-value=0.22 Score=50.43 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.....++++|++|+|||||++.|.+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34457899999999999999999863
No 436
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.52 E-value=0.23 Score=53.65 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
-.++|+|+.|+|||||++.|.|..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999999864
No 437
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.39 E-value=0.2 Score=48.21 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.++++|++|+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999864
No 438
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.38 E-value=0.16 Score=54.70 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
++.-.++++|+.|+|||||++.|.|..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 444578999999999999999999864
No 439
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.38 E-value=0.24 Score=47.17 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
.|+|+|.+++|||||...|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999999974
No 440
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.33 E-value=0.8 Score=44.18 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
...+.+.|++|+|||||++++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899999999999999999753
No 441
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.33 E-value=0.2 Score=51.89 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.+.=+++|+|+.|+|||||++.|.|.
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34457899999999999999999875
No 442
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.22 E-value=0.26 Score=46.35 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 039945 105 TINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
.+.|+|.|.+|+|||||.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999996
No 443
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.11 E-value=0.21 Score=49.59 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
-.++++|++|+|||||++.|.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34799999999999999999864
No 444
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.99 E-value=0.23 Score=45.51 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
-.++++|++++|||||+..|++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999999986
No 445
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=87.98 E-value=0.7 Score=44.24 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
....+.+.|++|+|||+|+.++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457899999999999999999753
No 446
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.94 E-value=0.25 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHCCC
Q 039945 107 NIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.++|+|+.|+|||||++.|.|..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999864
No 447
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.86 E-value=0.23 Score=46.28 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
-.++|+|++++|||||+..|++
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4579999999999999999987
No 448
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.80 E-value=0.53 Score=45.28 Aligned_cols=66 Identities=6% Similarity=0.098 Sum_probs=45.0
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCc
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLI 260 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~ 260 (531)
+.+.|||||+.-... .....+..+|.+|+|+.+... ........+..++..+.+.+-+|+|++|..
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~-~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENN-NKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSC-CHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCC-cHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 679999999964321 122233578999999998765 344455556677777766444899999864
No 449
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.78 E-value=0.19 Score=54.17 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
++.-.++++|+.|+|||||++.|.|..
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 444578999999999999999999864
No 450
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.76 E-value=0.3 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH
Q 039945 104 ATINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
....|+|.|.++|||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999996
No 451
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=87.64 E-value=0.88 Score=44.37 Aligned_cols=66 Identities=14% Similarity=0.009 Sum_probs=47.8
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCCceEEEEEeccCCc
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLI 260 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~~~iIvviNK~Dl~ 260 (531)
..+.|||||+.-... ........+|.+|+|+.+... ........+..++..+.+.+-+|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 579999999964322 122334679999999998775 455666777777777876555889999864
No 452
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.60 E-value=0.35 Score=42.65 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
...+.+.|.+|+|||+|+.++..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999874
No 453
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.47 E-value=0.35 Score=45.27 Aligned_cols=25 Identities=44% Similarity=0.492 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
.....|+|+|.+|+||||+.+.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999874
No 454
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=87.43 E-value=0.28 Score=49.45 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=18.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 039945 105 TINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
.+ .+|+|+.|+|||||+++|+
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 35 4699999999999999986
No 455
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=86.91 E-value=0.37 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
-+++++++|.|+|||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999999863
No 456
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=86.80 E-value=0.064 Score=50.42 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHCC
Q 039945 108 IGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 108 V~iiG~~~~GKSTLi~~L~g~ 128 (531)
++|+|+.|+|||||+++|.|.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 478999999999999999864
No 457
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.47 E-value=4.5 Score=41.09 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.+...|.+.|+||+|||+|..++.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 45567899999999999999999864
No 458
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=86.45 E-value=0.41 Score=48.22 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHH
Q 039945 103 QATINIGTIGHVAHGKSTVVKAI 125 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L 125 (531)
+..++|.++|..+||||||++.|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 44589999999999999999987
No 459
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.13 E-value=0.26 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
+...|+|+|.+|||||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4567999999999999999999864
No 460
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.95 E-value=0.25 Score=56.14 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
.-.++|+|+.|+|||||++.|+|..
T Consensus 699 GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 699 SSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp TCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999864
No 461
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.83 E-value=0.33 Score=46.76 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
-.++|+|++++|||||+..|++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4579999999999999999985
No 462
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=85.82 E-value=0.45 Score=43.08 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHC
Q 039945 107 NIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~g 127 (531)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 463
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.80 E-value=0.54 Score=43.68 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..|.|+|.|||||+|+...|..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999973
No 464
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=85.65 E-value=1.6 Score=41.15 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=45.3
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc------CCceEEEEEeccCCccHHHHH
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM------RLQHIIILQNKVDLIQENVAI 266 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~------~~~~iIvviNK~Dl~~~~~~~ 266 (531)
+.+.|||||+..... ....+..+|.+|+++.++.. ........+..++.+ +.+..-+|+|+.|..... ..
T Consensus 112 yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~-~~ 187 (257)
T 1wcv_1 112 YDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYY-ALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLL-AQ 187 (257)
T ss_dssp CSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTH-HHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSH-HH
T ss_pred CCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchH-HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHH-HH
Confidence 679999999854322 33455679999999998753 111222333333322 333224899999864321 22
Q ss_pred HHHHHHHHHH
Q 039945 267 NQHEAIMKFI 276 (531)
Q Consensus 267 ~~~~~i~~~l 276 (531)
+..+.+.+.+
T Consensus 188 ~~~~~l~~~~ 197 (257)
T 1wcv_1 188 QVEAQLRAHF 197 (257)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 3344455544
No 465
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.65 E-value=1.3 Score=43.58 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
+...|.+.|++|+|||+|..++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3367899999999999999999753
No 466
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.36 E-value=0.51 Score=44.59 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..+.+.|++|+|||||+++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 467
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.18 E-value=0.5 Score=45.81 Aligned_cols=22 Identities=36% Similarity=0.296 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..|.++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999974
No 468
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.10 E-value=0.52 Score=42.65 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..+.+.|.+|+|||+|+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999874
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=84.79 E-value=0.37 Score=45.95 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=21.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
++...|+|.|.+|+||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34478999999999999999998643
No 470
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.70 E-value=0.31 Score=57.71 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
++.-+|||+|++|+|||||++.|.+..
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 455689999999999999999998764
No 471
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.66 E-value=0.56 Score=43.25 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
...+.+.|.+|+|||||+.++..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999874
No 472
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.63 E-value=0.46 Score=41.84 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
...+.+.|.+|+|||+|+.++..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 473
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.55 E-value=1.1 Score=46.08 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.+..-|.+.|+||+|||+|..++.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45578999999999999999999763
No 474
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.54 E-value=0.52 Score=43.12 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 039945 108 IGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 108 V~iiG~~~~GKSTLi~~L~ 126 (531)
.+|+|+.++|||||+.+|.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999984
No 475
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.53 E-value=1.3 Score=44.14 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
.....|.+.|.+|+|||+|+.+|..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999974
No 476
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=84.47 E-value=2.7 Score=41.20 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
...|.+.|.+|+|||+|+.++..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 35689999999999999999964
No 477
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=84.38 E-value=0.45 Score=44.87 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=42.2
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC--------ceEEEEEeccCC
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL--------QHIIILQNKVDL 259 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~--------~~iIvviNK~Dl 259 (531)
.+.+.|||||+... ..+...+..+|.+|+|++++.. ........+..+...+. ..+-+|+|++|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVS-SVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHH-HHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChh-HHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 37899999998543 2455566789999999998643 12223333444443331 357889999984
No 478
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.26 E-value=0.44 Score=56.37 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
++.-.++|+|++|+|||||++.|+|..
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 445679999999999999999999764
No 479
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=83.99 E-value=0.46 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
+.-.++|+|+.|+|||||++.|.|
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 334689999999999999999984
No 480
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=83.86 E-value=2.1 Score=41.28 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=41.9
Q ss_pred eeeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHc------CCceEEEEEeccCCcc
Q 039945 192 LRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIM------RLQHIIILQNKVDLIQ 261 (531)
Q Consensus 192 ~~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~------~~~~iIvviNK~Dl~~ 261 (531)
.+.+.|||||+.-... ....+..+|.+|+++.++.. ........+..+..+ +.+.+-+|+|+.|...
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEE-STNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGC-CHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHH-HHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 3679999999854332 23344569999999998754 222333334444332 4443458899999754
No 481
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=83.65 E-value=0.36 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=17.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
.+.|+|.|.++|||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999863
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=83.30 E-value=0.69 Score=43.30 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..|++.|..|+||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999974
No 483
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.25 E-value=0.69 Score=42.31 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..|+|+|.+++|||||...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999854
No 484
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=83.24 E-value=0.8 Score=45.77 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
...+|+++|.+|+|||||...|.+
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999998864
No 485
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.90 E-value=1.8 Score=43.67 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
....|.|.|.+|+|||+|+.++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999964
No 486
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=82.81 E-value=1.2 Score=42.23 Aligned_cols=64 Identities=13% Similarity=0.050 Sum_probs=42.6
Q ss_pred eeEEEEecCChhhHHHHHHHhccccCceEEEEeCCCCCCCcchHHHHHHHHHcCC-ceEEEEEeccCC
Q 039945 193 RHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRL-QHIIILQNKVDL 259 (531)
Q Consensus 193 ~~i~liDtPG~~~~~~~~~~~l~~aD~~llVvDa~~~~~~~qt~e~l~~~~~~~~-~~iIvviNK~Dl 259 (531)
+.+.|||||+.... .....+..+|.+|+++.++.. ........+..++.++. .++.+|+|+++.
T Consensus 145 yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 145 YDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKW-AVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp CSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTT-HHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChH-HHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 67999999985432 244556679999999998753 22223344556666643 256789999953
No 487
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=82.77 E-value=0.28 Score=50.17 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=20.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
.+. .++|+|+.|+|||||+++|.+
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHH
Confidence 344 679999999999999999853
No 488
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=82.74 E-value=0.51 Score=55.69 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGVQ 129 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~~ 129 (531)
++.-.++++|++|+|||||++.|.|..
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445679999999999999999999864
No 489
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.32 E-value=0.56 Score=46.94 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 104 ATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 104 ~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..--++|+|++++|||||+..|++.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456899999999999999999864
No 490
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=82.11 E-value=3.5 Score=42.60 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHCC
Q 039945 106 INIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
..+.|.|++|+|||||.+.|...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999999999753
No 491
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=81.84 E-value=0.79 Score=39.22 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..+|.+.|.+|+|||+|..+|..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999964
No 492
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=81.83 E-value=0.71 Score=42.92 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~ 126 (531)
-.++++|++++|||||+..++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999987775
No 493
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=81.82 E-value=0.47 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 039945 105 TINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
.-.++|+|+.|+|||||++.++
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 3468999999999999998654
No 494
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=81.77 E-value=3 Score=38.72 Aligned_cols=21 Identities=14% Similarity=-0.078 Sum_probs=17.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 039945 106 INIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~ 126 (531)
.-+.+.|.+|+||||++-.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 457888999999999876654
No 495
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=81.67 E-value=0.74 Score=42.18 Aligned_cols=22 Identities=45% Similarity=0.596 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHC
Q 039945 106 INIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 106 ~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..|+|+|.+++||||+...|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 496
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.49 E-value=0.6 Score=46.03 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 039945 107 NIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 107 ~V~iiG~~~~GKSTLi~~L~ 126 (531)
-.+|+|..|+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 46899999999999999997
No 497
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=81.41 E-value=0.76 Score=45.64 Aligned_cols=21 Identities=43% Similarity=0.532 Sum_probs=18.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 039945 105 TINIGTIGHVAHGKSTVVKAIS 126 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~ 126 (531)
.++ +|+|+.|+|||||+.+++
T Consensus 24 ~~~-~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GIN-LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEE-EEECCTTSSHHHHHHHHH
T ss_pred CeE-EEECCCCCCHHHHHHHHH
Confidence 354 799999999999999974
No 498
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.23 E-value=1.8 Score=44.39 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
....-|.+.|+||+|||+|..++.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999999753
No 499
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=81.18 E-value=0.84 Score=40.76 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHC
Q 039945 105 TINIGTIGHVAHGKSTVVKAISG 127 (531)
Q Consensus 105 ~~~V~iiG~~~~GKSTLi~~L~g 127 (531)
..-|.|.|++|+|||||.-.|..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999974
No 500
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.01 E-value=1.7 Score=44.71 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHCC
Q 039945 103 QATINIGTIGHVAHGKSTVVKAISGV 128 (531)
Q Consensus 103 ~~~~~V~iiG~~~~GKSTLi~~L~g~ 128 (531)
.....|.+.|+||+|||+|..++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 45578999999999999999999864
Done!