BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039949
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7F7|UGPI5_ARATH Uncharacterized GPI-anchored protein At1g27950 OS=Arabidopsis
thaliana GN=At1g27950 PE=1 SV=1
Length = 193
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 37 ECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFK--- 93
EC + CL F GKA P+ CC + + KCLC +++ K
Sbjct: 34 ECNQDFQKVTLCLDFATGKATIPSKKCCDAVEDIKERDPKCLCFVIQQAKTGGQALKDLG 93
Query: 94 MNATLALSLP-SVRHAPAKVSDCPALLN-PPSNPTDAQVLEQLAANSGGNNSTT 145
+ + LP S + A +++CP LL PS+P DA V NN+TT
Sbjct: 94 VQEDKLIQLPTSCQLHNASITNCPKLLGISPSSP-DAAVFT--------NNATT 138
>sp|Q8VYI9|NLTL5_ARATH Non-specific lipid-transfer protein-like protein At5g64080
OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1
Length = 182
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 37 ECGDQLADFSACLPFV--GGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKM 94
+C + + + CL FV GG P TCCS + +CLC K G +
Sbjct: 42 DCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCEAFKSSAS--LGVTL 99
Query: 95 NATLALSLPSV--RHAPAKVSDCPALLNPPSNP 125
N T A +LP+ HAP ++ C + P + P
Sbjct: 100 NITKASTLPAACKLHAP-SIATCGLSVAPSTAP 131
>sp|Q40905|NLT13_PARJU Probable non-specific lipid-transfer protein 1 OS=Parietaria
judaica PE=1 SV=1
Length = 138
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 22 TSAGFVSSDFNQGRKE-CGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTR 75
TS+ V+ G +E CG + CLPFV GK K P+ CCS + +T+
Sbjct: 23 TSSASVAPAPAPGSEETCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETK 77
>sp|Q9ZQI8|NLTL2_ARATH Non-specific lipid-transfer protein-like protein At2g13820
OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1
Length = 169
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 14/140 (10%)
Query: 18 VFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFV--GGKAKSPTPTCCSNITKEGSKTR 75
+ I + +S + +C + + + CL FV G P TCCS +
Sbjct: 7 LMIFSVVALMSGERAHAAVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGP 66
Query: 76 KCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPA--------KVSDCPALLNPPSNPTD 127
+CLC K N G ++ + A SLPSV A VS P P +PT
Sbjct: 67 ECLCEAFK--NSGSLGLTLDLSKAASLPSVCKVAAPPSARCGLSVSGDPPATAPGLSPTA 124
Query: 128 AQVLEQLAANSGGNNSTTVT 147
L +SG N +T V+
Sbjct: 125 GAGAPAL--SSGANAATPVS 142
>sp|P43217|NLT11_PARJU Probable non-specific lipid-transfer protein (Fragment)
OS=Parietaria judaica GN=PMAI PE=1 SV=3
Length = 139
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 38 CGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTR 75
CG + CLPFV GK K P+ CCS + +T+
Sbjct: 4 CGTMVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETK 41
>sp|O04404|NLT12_PARJU Probable non-specific lipid-transfer protein 1 OS=Parietaria
judaica PE=1 SV=1
Length = 176
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 38 CGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTR 75
CG + CLPFV GK K P+ CCS + +T+
Sbjct: 41 CGTVVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETK 78
>sp|Q38737|FIL1_ANTMA Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2
SV=1
Length = 99
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 14 VLFTVFIVTSAGFVSSDFNQGRKECGDQLADFSACLPFVG-GKAKSPTPTCCSNITKEGS 72
V+ TV + S S+ + C LA+ +AC PFV G A +P+ CC T S
Sbjct: 11 VMLTVLVAQSQLITQSE----AQTCSASLANLNACAPFVVLGAATTPSSDCC---TALQS 63
Query: 73 KTRKCLC 79
+CLC
Sbjct: 64 VDHECLC 70
>sp|P55958|NLT21_PARJU Probable non-specific lipid-transfer protein 2 OS=Parietaria
judaica PE=1 SV=1
Length = 133
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 38 CGDQLADFSACLPFVGGKAKSPTPTCCSNITK 69
CG + D CL FV G+ K P+ CCS K
Sbjct: 35 CGKVVQDIMPCLHFVKGEEKEPSKECCSGTKK 66
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 36 KECGDQLADF-SACLPFVGGKAK--------SPTPTCCSNITKEGSKTRKCLCLLVKDRN 86
K+C ++ A+F L F+ GKA+ + +PT S T+ S TR+ L + +D N
Sbjct: 424 KDCTERQANFLREDLAFLQGKAREFSSEQTRANSPTISSEQTRANSPTRRELQVWGRDNN 483
Query: 87 DPRH-GFKMNATLALSLPSV 105
P G T++ + P +
Sbjct: 484 SPSEAGADRQGTVSFNFPQI 503
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 36 KECGDQLADF-SACLPFVGGKAK--------SPTPTCCSNITKEGSKTRKCLCLLVKDRN 86
K+C ++ A+F L F+ GKA+ + +PT S T+ S TR+ L + +D N
Sbjct: 424 KDCTERQANFLREDLAFLQGKAREFSSEQTRANSPTISSEQTRANSPTRRELQVWGRDNN 483
Query: 87 DPRH-GFKMNATLALSLPSV 105
P G T++ + P +
Sbjct: 484 SPSEAGADRQGTVSFNFPQI 503
>sp|O04403|NLT22_PARJU Probable non-specific lipid-transfer protein 2 OS=Parietaria
judaica PE=1 SV=1
Length = 133
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 22 TSAGFVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITK 69
TS+ ++S G CG + CL FV G+ K P+ +CCS K
Sbjct: 19 TSSAELASAPAPGEGPCGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKK 66
>sp|Q5QNV8|CQ066_MOUSE Uncharacterized protein C17orf66 homolog OS=Mus musculus GN=Gm11435
PE=2 SV=1
Length = 569
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 70 EGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPTDAQ 129
E K R+ L K RN PR+ FK +A + S+ K + P LL+P +P Q
Sbjct: 84 EQRKERESKSLFWKRRNFPRY-FKDSAQMPNLHVSISKLTLKPKEGPGLLDPTKDPLKWQ 142
Query: 130 VLEQL 134
L++L
Sbjct: 143 RLKEL 147
>sp|Q43193|NLTP1_SORBI Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1
PE=3 SV=1
Length = 118
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 37 ECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTR-------KCLCLLVKDRNDPR 89
CG + + CL + G+ +P+ CCS + S R C CL +N R
Sbjct: 28 SCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCL----KNAAR 83
Query: 90 HGFKMNATLALSLPS 104
+NA A S+PS
Sbjct: 84 GISGLNAGNAASIPS 98
>sp|Q28RD6|RSMA_JANSC Ribosomal RNA small subunit methyltransferase A OS=Jannaschia sp.
(strain CCS1) GN=rsmA PE=3 SV=2
Length = 289
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 67 ITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDCPALLNPPSNPT 126
+ + GSKT L +L + R DPR + P V A + PA P P
Sbjct: 161 VAQPGSKTYGRLAILSQWRADPRIVMGLPPEAFTPPPKVHSAVVHFTALPA----PRFPA 216
Query: 127 DAQVLEQLAANSGGNN 142
DA+VL ++ A + G
Sbjct: 217 DARVLTRVVAAAFGQR 232
>sp|P10973|NLTPA_RICCO Non-specific lipid-transfer protein A OS=Ricinus communis PE=1
SV=1
Length = 92
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 37 ECGDQLADFSACLPFVGGKAKSPTPTCCSNI 67
+CG + ++C+PF+ G SP+ +CC+ +
Sbjct: 2 DCGQVNSSLASCIPFLTGGVASPSASCCAGV 32
>sp|A0AT31|NLTP5_LENCU Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1
Length = 116
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 26 FVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITK 69
+ + +G CG D S CL ++ G P+P CC + K
Sbjct: 16 MIVAPMAEGAISCGAVTGDLSPCLTYLTG-GPGPSPQCCGGVKK 58
>sp|A0AT29|NLTP2_LENCU Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1
Length = 118
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 26 FVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITK 69
V + +G CG +D S CL ++ G P+P CC + K
Sbjct: 17 VVIAPMAEGAISCGAVTSDLSPCLTYLTG-GPGPSPQCCGGVKK 59
>sp|P82007|NLTP1_HELAN Non-specific lipid-transfer protein AP10 OS=Helianthus annuus
PE=1 SV=2
Length = 116
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 38 CGDQLADFSACLPFV--GGKAKSPTPTCCSNITKEGSKTR 75
C D + + CLP++ GGK PTP CC+ K TR
Sbjct: 29 CNDVTGNLTPCLPYLRSGGK---PTPACCAGAKKLLGATR 65
>sp|A0AT30|NLTP3_LENCU Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1
Length = 118
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 26 FVSSDFNQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITK 69
V + + CG D + C+P++ G A PT +CC+ + K
Sbjct: 17 VVIAPMAEAAVSCGTVTGDLAPCIPYLTGGA-GPTDSCCAGVKK 59
>sp|Q43194|NLTP2_SORBI Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2
PE=3 SV=1
Length = 122
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 38 CGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTR-------KCLCLLVKDRNDPRH 90
CG + CL + G+ P+ CCS + S R C CL +N R
Sbjct: 33 CGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCL----KNAARG 88
Query: 91 GFKMNATLALSLPS 104
+N A S+PS
Sbjct: 89 IRGLNVGKAASIPS 102
>sp|A0AT32|NLTP6_LENCU Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1
Length = 118
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 33 QGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITK 69
+G CG +D S CL ++ G P+P CC + K
Sbjct: 24 EGAISCGAVTSDLSPCLTYLTG-GPGPSPQCCGGVKK 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,818,152
Number of Sequences: 539616
Number of extensions: 2029885
Number of successful extensions: 4076
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 4060
Number of HSP's gapped (non-prelim): 46
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)