Query 039949
Match_columns 147
No_of_seqs 101 out of 1025
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:37:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.5 4.9E-15 1.1E-19 102.7 4.5 71 37-110 2-78 (89)
2 PF14368 LTP_2: Probable lipid 99.5 9.4E-16 2E-20 106.3 0.1 81 32-115 16-96 (96)
3 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 9E-15 1.9E-19 94.9 3.8 63 45-108 1-63 (63)
4 cd04660 nsLTP_like nsLTP_like: 99.5 1.7E-14 3.7E-19 97.0 3.7 71 38-115 1-73 (73)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.4 3.9E-13 8.5E-18 89.2 3.5 61 43-111 4-64 (66)
6 smart00499 AAI Plant lipid tra 99.1 2E-10 4.4E-15 75.5 4.8 76 38-115 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.6 1.3E-09 2.9E-14 74.9 -4.9 70 43-115 13-90 (90)
8 PF14547 Hydrophob_seed: Hydro 95.0 0.0086 1.9E-07 41.6 0.7 76 38-116 2-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 93.7 0.052 1.1E-06 37.7 2.3 72 37-111 3-80 (85)
10 cd00261 AAI_SS AAI_SS: Alpha-A 74.2 0.73 1.6E-05 32.4 -0.7 70 43-116 13-109 (110)
11 PLN00214 putative protein; Pro 66.6 4.9 0.00011 29.4 2.1 75 1-84 1-83 (115)
12 PF05617 Prolamin_like: Prolam 31.9 42 0.00091 21.4 2.1 24 54-80 23-46 (70)
13 PF12393 Dr_adhesin: Dr family 26.3 64 0.0014 16.6 1.7 8 1-8 1-8 (21)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.55 E-value=4.9e-15 Score=102.73 Aligned_cols=71 Identities=25% Similarity=0.570 Sum_probs=58.7
Q ss_pred CchhhhccccCchhhhcCCCCCCChhhHHHHHhhcCC-----CccccccccccCCCCCCCCC-CCHHHHhhcccCCCCCC
Q 039949 37 ECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSK-----TRKCLCLLVKDRNDPRHGFK-MNATLALSLPSVRHAPA 110 (147)
Q Consensus 37 ~C~~~~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~-----~~~ClC~~l~~~~~~~~g~~-in~~~a~~LP~~Cgv~~ 110 (147)
+|..++..|.||++|++|....|++.||++++++++. +..|+|+.+++... ++. ||.+|+++||++||++.
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~---~~~~i~~~~a~~LP~~C~v~~ 78 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAA---GISGLNPGRAAGLPGKCGVSI 78 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhccccccc---ccCCCCHHHHHhChHhcccCC
Confidence 6899999999999999987788999999999998764 23566655776532 333 99999999999999976
No 2
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.53 E-value=9.4e-16 Score=106.31 Aligned_cols=81 Identities=31% Similarity=0.630 Sum_probs=48.7
Q ss_pred ccCCCCchhhhccccCchhhhcCCCCCCChhhHHHHHhhcCCCccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCC
Q 039949 32 NQGRKECGDQLADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAK 111 (147)
Q Consensus 32 a~~~~~C~~~~~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~~~ 111 (147)
+....+|...+....+|..|+++ ...|++.||++++++.+.++.|||+++++.. ..+++||.+|++.||++||++.+
T Consensus 16 ~~~~~~c~~~l~~c~~~~~~~~~-~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~--~~~~~in~~~a~~Lp~~Cg~~~~ 92 (96)
T PF14368_consen 16 AACCCSCANSLLPCCPCLCYVTG-GPAPSAACCSALKSVVQADPPCLCQLLNSPG--APGFGINVTRALALPAACGVPVP 92 (96)
T ss_dssp --BTTB-HCCCCHH--HHHHHCC------HHHHHHHCC----HCCHHHCCCC-CC--HCHHCCTCHHHHHHHHHCTSS-S
T ss_pred CCCcchhHHHHhccccchhccCC-CCCCCHHHHHHHHHhccCCCCCHHHhcCccc--cccCCcCHHHHHHHHHHcCCCCC
Confidence 33556776543333344888884 6799999999999998888999999998753 13556999999999999999985
Q ss_pred CCCC
Q 039949 112 VSDC 115 (147)
Q Consensus 112 ~s~C 115 (147)
.++|
T Consensus 93 ~~~C 96 (96)
T PF14368_consen 93 PSKC 96 (96)
T ss_dssp ----
T ss_pred CCCC
Confidence 4666
No 3
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.52 E-value=9e-15 Score=94.90 Aligned_cols=63 Identities=32% Similarity=0.615 Sum_probs=53.6
Q ss_pred ccCchhhhcCCCCCCChhhHHHHHhhcCCCccccccccccCCCCCCCCCCCHHHHhhcccCCCC
Q 039949 45 FSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHA 108 (147)
Q Consensus 45 L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv 108 (147)
|.||++|++|+...|++.||++++++++.++.|+|+++++......+ .+|.++++.||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~-~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLG-LKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccccccC-cccHHHHHhchHhcCC
Confidence 67999999987788999999999999988899999999886443223 1279999999999996
No 4
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.49 E-value=1.7e-14 Score=96.96 Aligned_cols=71 Identities=25% Similarity=0.571 Sum_probs=57.1
Q ss_pred chhhhccccCchhhhcCCC--CCCChhhHHHHHhhcCCCccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCCCCCC
Q 039949 38 CGDQLADFSACLPFVGGKA--KSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAKVSDC 115 (147)
Q Consensus 38 C~~~~~~L~pC~~yv~g~~--~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~~~~s~C 115 (147)
|+..+..|.||++|+++++ ..|+..||++++++ +..|+|.+++.. .+. .||.++|++||+.||++++.++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~---~~~-~i~~~~a~~Lp~~Cgv~~p~~~C 73 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTSL---VLQ-IIDPDKAVYLPAKCGLPLPPSSC 73 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCCC---ccc-ccCHHHHHHHHHHcCCCCCCCCC
Confidence 5666788999999999755 46999999999986 456999887643 233 39999999999999999843766
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.37 E-value=3.9e-13 Score=89.19 Aligned_cols=61 Identities=26% Similarity=0.603 Sum_probs=52.5
Q ss_pred ccccCchhhhcCCCCCCChhhHHHHHhhcCCCccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCC
Q 039949 43 ADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHGFKMNATLALSLPSVRHAPAK 111 (147)
Q Consensus 43 ~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g~~in~~~a~~LP~~Cgv~~~ 111 (147)
.+|.+|++|++++ ..|+++||+.+++. ..|||+|+++ +.++..||.++|++||++||+++|
T Consensus 4 ~~L~~C~~ai~~~-~~Ps~~CC~~Lk~~----~~CLC~y~~~---p~l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGG-SPPSAACCAKLKEQ----QSCLCQYAKN---PSLKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCC-CCCCHHHHHHHhcC----CCCeeeeecC---ccHHhhcCcHHHHHHHHHcCCCCC
Confidence 5899999999963 68999999999984 4899999987 345556999999999999999874
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.07 E-value=2e-10 Score=75.47 Aligned_cols=76 Identities=30% Similarity=0.617 Sum_probs=58.4
Q ss_pred chhhhccccCchhhhcCC--CCCCChhhHHHHHhhcCCCccccccccccCCCCCCC-CCCCHHHHhhcccCCCCCCCCCC
Q 039949 38 CGDQLADFSACLPFVGGK--AKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRHG-FKMNATLALSLPSVRHAPAKVSD 114 (147)
Q Consensus 38 C~~~~~~L~pC~~yv~g~--~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~g-~~in~~~a~~LP~~Cgv~~~~s~ 114 (147)
|...+..+.+|.+|+++. ...|+..||++++.+. +..|+|.+++........ ..++..++..||+.||+..+.+.
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~~~ 78 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPYTD 78 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCCCC
Confidence 566677888999999986 4689999999999996 678999988764322110 02589999999999999875344
Q ss_pred C
Q 039949 115 C 115 (147)
Q Consensus 115 C 115 (147)
|
T Consensus 79 C 79 (79)
T smart00499 79 C 79 (79)
T ss_pred C
Confidence 4
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.55 E-value=1.3e-09 Score=74.86 Aligned_cols=70 Identities=24% Similarity=0.602 Sum_probs=54.7
Q ss_pred ccccCchhhhcCCCCCCChhhHHHHHhhcCCCccccccccccCCCCCC--------CCCCCHHHHhhcccCCCCCCCCCC
Q 039949 43 ADFSACLPFVGGKAKSPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRH--------GFKMNATLALSLPSVRHAPAKVSD 114 (147)
Q Consensus 43 ~~L~pC~~yv~g~~~~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~--------g~~in~~~a~~LP~~Cgv~~~~s~ 114 (147)
..+.+|..|+.+....|+..||++|+++ ++.|+|..|+....... ...++..+|..||+.||++.+..+
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~~~ 89 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPYTD 89 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSSS-
T ss_pred ccccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 4589999999987678999999999999 68999999876432100 125889999999999999875323
Q ss_pred C
Q 039949 115 C 115 (147)
Q Consensus 115 C 115 (147)
|
T Consensus 90 C 90 (90)
T PF00234_consen 90 C 90 (90)
T ss_dssp G
T ss_pred C
Confidence 3
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=95.01 E-value=0.0086 Score=41.57 Aligned_cols=76 Identities=25% Similarity=0.480 Sum_probs=50.6
Q ss_pred chhhhccccCchhhhc----CCCCCCChhhHHHHHhhcCCC-ccccccccccCCCCCCC-CCCCHHHHh-hcccCCCCCC
Q 039949 38 CGDQLADFSACLPFVG----GKAKSPTPTCCSNITKEGSKT-RKCLCLLVKDRNDPRHG-FKMNATLAL-SLPSVRHAPA 110 (147)
Q Consensus 38 C~~~~~~L~pC~~yv~----g~~~~Ps~~CC~al~~~~~~~-~~ClC~~l~~~~~~~~g-~~in~~~a~-~LP~~Cgv~~ 110 (147)
|..+..+|-.|.+.+. ..+..+...||+-++.+.+.+ ..|||..+|... +| +.+|....+ .|-+.||...
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~v---lg~i~~~ipv~l~~lln~CGk~~ 78 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANV---LGLINVNIPVALNLLLNACGKTV 78 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhc---ccccccccccHHHHHHHHhCCcC
Confidence 4445557888998882 113457899999999998754 689999887642 45 444443333 4567798876
Q ss_pred C-CCCCC
Q 039949 111 K-VSDCP 116 (147)
Q Consensus 111 ~-~s~C~ 116 (147)
| ..+|.
T Consensus 79 p~gf~C~ 85 (85)
T PF14547_consen 79 PSGFTCP 85 (85)
T ss_pred cCCCcCC
Confidence 3 34663
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=93.72 E-value=0.052 Score=37.70 Aligned_cols=72 Identities=22% Similarity=0.409 Sum_probs=49.3
Q ss_pred CchhhhccccCchhhhcCC----CCCCChhhHHHHHhhcCCC-ccccccccccCCCCCCCCCCCHHHHhh-cccCCCCCC
Q 039949 37 ECGDQLADFSACLPFVGGK----AKSPTPTCCSNITKEGSKT-RKCLCLLVKDRNDPRHGFKMNATLALS-LPSVRHAPA 110 (147)
Q Consensus 37 ~C~~~~~~L~pC~~yv~g~----~~~Ps~~CC~al~~~~~~~-~~ClC~~l~~~~~~~~g~~in~~~a~~-LP~~Cgv~~ 110 (147)
.|..+..+|-.|.+-+..- +..|..+||+-++.+.+.+ ..|+|..+|.. .+|+.+|....+. +-+.||-..
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan---~lgi~~~~pv~l~llln~CGk~~ 79 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKAN---ILGISINIPVALSLLLNSCGRNV 79 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeecc---ccCcccccChhHHHHHHHHcCcC
Confidence 4655556777888877421 3467799999999998754 78999988863 2575555454443 345788776
Q ss_pred C
Q 039949 111 K 111 (147)
Q Consensus 111 ~ 111 (147)
|
T Consensus 80 P 80 (85)
T cd01958 80 P 80 (85)
T ss_pred C
Confidence 3
No 10
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=74.24 E-value=0.73 Score=32.42 Aligned_cols=70 Identities=16% Similarity=0.366 Sum_probs=44.6
Q ss_pred ccccCchhhhcCC---CC-----------CCChhhHHHHHhhcCCCccccccccccCCCCCC---C----------CCCC
Q 039949 43 ADFSACLPFVGGK---AK-----------SPTPTCCSNITKEGSKTRKCLCLLVKDRNDPRH---G----------FKMN 95 (147)
Q Consensus 43 ~~L~pC~~yv~g~---~~-----------~Ps~~CC~al~~~~~~~~~ClC~~l~~~~~~~~---g----------~~in 95 (147)
..|.+|..|+.-. .. ..-..||..++.+ ...|.|..|........ + ...-
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i---~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI---PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERM 89 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhC---cHhhhHHHHHHHHHHHHHhhhccccccCcChHHHH
Confidence 3578899998621 11 1247899999998 57899998864221100 0 1123
Q ss_pred HHHHhhcccCCCCCCCCCCCC
Q 039949 96 ATLALSLPSVRHAPAKVSDCP 116 (147)
Q Consensus 96 ~~~a~~LP~~Cgv~~~~s~C~ 116 (147)
...|..||..||+.. ...|.
T Consensus 90 ~~~a~~Lp~~C~~~~-~~~C~ 109 (110)
T cd00261 90 RQAAQNLPSMCNLYP-PPYCP 109 (110)
T ss_pred HHHHHhhchhcCCCC-CCCCC
Confidence 457789999999975 23453
No 11
>PLN00214 putative protein; Provisional
Probab=66.63 E-value=4.9 Score=29.39 Aligned_cols=75 Identities=20% Similarity=0.429 Sum_probs=39.2
Q ss_pred CccchhhHHHHHHHHHHHHHHHH-hhccccccccCC---CCchhhhccccC-chhhhcC---CCCCCChhhHHHHHhhcC
Q 039949 1 MEKVASTVHVNTKVLFTVFIVTS-AGFVSSDFNQGR---KECGDQLADFSA-CLPFVGG---KAKSPTPTCCSNITKEGS 72 (147)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~a~~~---~~C~~~~~~L~p-C~~yv~g---~~~~Ps~~CC~al~~~~~ 72 (147)
|+|..+ +++++.+++++++.. .++..-+ +.+. .+|.. ++.+ |..-+.. ...+++..||..+-...
T Consensus 1 m~~~~~--~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~C~~---Kmt~KCa~EI~a~i~~N~t~s~~CC~~LVk~G- 73 (115)
T PLN00214 1 MSKFSS--QITTLFIVVALVCAFVPVFSVEE-AEAKSLWNTCLV---KITPKCALDIIAVVFENGTLIDPCCNDLVKEG- 73 (115)
T ss_pred CCcccc--chhHHHHHHHHHHhcccccchhh-hHHHHHHHHHHh---hccHhhHHHHHHHHHcCCCCchHHHHHHHHHh-
Confidence 445443 456666666654443 2222222 1121 24543 3444 7654331 23567999999977763
Q ss_pred CCcccccccccc
Q 039949 73 KTRKCLCLLVKD 84 (147)
Q Consensus 73 ~~~~ClC~~l~~ 84 (147)
..|.=.+++-
T Consensus 74 --K~CH~~LiK~ 83 (115)
T PLN00214 74 --KVCHDTLIKY 83 (115)
T ss_pred --hHHHHHHHHH
Confidence 4777665554
No 12
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=31.90 E-value=42 Score=21.37 Aligned_cols=24 Identities=38% Similarity=0.812 Sum_probs=18.6
Q ss_pred CCCCCCChhhHHHHHhhcCCCcccccc
Q 039949 54 GKAKSPTPTCCSNITKEGSKTRKCLCL 80 (147)
Q Consensus 54 g~~~~Ps~~CC~al~~~~~~~~~ClC~ 80 (147)
|+....+.+||.++..+. ..|.=.
T Consensus 23 g~~~~i~~~CC~~i~~~g---~~C~~~ 46 (70)
T PF05617_consen 23 GNKKNIGPECCKAINKMG---KDCHPA 46 (70)
T ss_pred CCCCCCChHHHHHHHHHh---HhHHHH
Confidence 544689999999999984 567665
No 13
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=26.26 E-value=64 Score=16.64 Aligned_cols=8 Identities=38% Similarity=0.443 Sum_probs=3.9
Q ss_pred CccchhhH
Q 039949 1 MEKVASTV 8 (147)
Q Consensus 1 ~~~~~~~~ 8 (147)
|.|+|+|.
T Consensus 1 MKklaiMa 8 (21)
T PF12393_consen 1 MKKLAIMA 8 (21)
T ss_pred CchHHHHH
Confidence 45555443
Done!