BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039950
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 17/211 (8%)
Query: 7 ASSISRL--QQLASVKGKKR--------TKVEAFSAYIWKIMVTSID-EKHGKCKMGWLV 55
A SI +L +Q++++K K + + E + ++W+ + E K+
Sbjct: 230 AVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIAT 289
Query: 56 DGRCRILKHENPMSSYIGNVLSLAVGEASVTELKQGSISEIANRVHDSITKVTNEAHFLD 115
DGR R+ P Y GNV+ A A +L+ + A+++HD++ ++ N+ +
Sbjct: 290 DGRARLRPSLPP--GYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDND-YLRS 346
Query: 116 LIDWIECHRPGLMLARVVLGRDGPTVVVSSGRRFPVAELDFGFGNPVLGAVSSIIERSGV 175
+D++E L R P + ++S R P+ + DFG+G P+ I G+
Sbjct: 347 ALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGG-IAYEGL 405
Query: 176 GYINQRPSATCDGSWTVSAILWPELATALES 206
+I PS T DGS +V+ L E +S
Sbjct: 406 SFI--LPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 17/211 (8%)
Query: 7 ASSISRL--QQLASVKGKKR--------TKVEAFSAYIWKIMVTSID-EKHGKCKMGWLV 55
A SI +L +Q++++K K + + E + ++W+ + E K+
Sbjct: 230 AVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIAT 289
Query: 56 DGRCRILKHENPMSSYIGNVLSLAVGEASVTELKQGSISEIANRVHDSITKVTNEAHFLD 115
DGR R+ P Y GNV+ A A +L+ + A+++HD++ ++ N+ +
Sbjct: 290 DGRARLRPSLPP--GYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDND-YLRS 346
Query: 116 LIDWIECHRPGLMLARVVLGRDGPTVVVSSGRRFPVAELDFGFGNPVLGAVSSIIERSGV 175
+D++E L R P + ++S R P+ + DFG+G P+ I G+
Sbjct: 347 ALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGG-IAYEGL 405
Query: 176 GYINQRPSATCDGSWTVSAILWPELATALES 206
+I PS T DGS +V+ L E +S
Sbjct: 406 SFI--LPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 17/211 (8%)
Query: 7 ASSISRL--QQLASVKGKKR--------TKVEAFSAYIWKIMVTSID-EKHGKCKMGWLV 55
A SI +L +Q++++K K + + E + ++W+ + E K+
Sbjct: 227 AVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIAT 286
Query: 56 DGRCRILKHENPMSSYIGNVLSLAVGEASVTELKQGSISEIANRVHDSITKVTNEAHFLD 115
DGR R+ P Y GNV+ A A +L+ + A+++HD++ ++ N+ +
Sbjct: 287 DGRARLRPSLPP--GYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDND-YLRS 343
Query: 116 LIDWIECHRPGLMLARVVLGRDGPTVVVSSGRRFPVAELDFGFGNPVLGAVSSIIERSGV 175
+D++E L R P + ++S R P+ + DFG+G P+ I G+
Sbjct: 344 ALDYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGG-IAYEGL 402
Query: 176 GYINQRPSATCDGSWTVSAILWPELATALES 206
+I PS T DGS +V+ L E +S
Sbjct: 403 SFI--LPSPTNDGSMSVAISLQGEHMKLFQS 431
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 19/174 (10%)
Query: 12 RLQQLASVKGKKRTKVEAFSAYIWKIMVTSIDEKHGKCKMGWLVDGRCRILKHENPMSSY 71
R Q ++ + K ++V+ AYIWK ++ K+G +V + P+ Y
Sbjct: 230 RAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHY 289
Query: 72 -IGNVLSLAVGEASVTELKQGSISEIANRVHDSITKVTNEAHFLDLIDWIEC---HRPGL 127
+GN+ +L A+V ++ + S+ K T + H +L+ + C P
Sbjct: 290 AMGNIATLLF--AAVDAEWDKDFPDLIGPLRTSLEK-TEDDHNHELLKGMTCLYELEPQE 346
Query: 128 MLARVVLGRDGPTVVVSSGRRFPVAELDFGFGNPVLGAVSSIIERSGVGYINQR 181
+L+ +S R +LDFG+G P+ ++ +R+ ++ R
Sbjct: 347 LLS------------FTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTR 388
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 30.4 bits (67), Expect = 0.86, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 86 TELKQGSISEIANRVHDS--ITKVTNEAHFLDLIDWIECHRPGLMLARVVLGRDG 138
T L + + E+ + +H + IT+VT F + + WIE +P A L DG
Sbjct: 22 TSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDG 76
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 30.4 bits (67), Expect = 0.86, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 86 TELKQGSISEIANRVHDS--ITKVTNEAHFLDLIDWIECHRPGLMLARVVLGRDG 138
T L + + E+ + +H + IT+VT F + + WIE +P A L DG
Sbjct: 62 TSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDG 116
>pdb|1ID3|D Chain D, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|H Chain H, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 130
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%), Gaps = 2/23 (8%)
Query: 18 SVKGKKRTKV--EAFSAYIWKIM 38
SV GKKR+KV E +S+YI+K++
Sbjct: 26 SVDGKKRSKVRKETYSSYIYKVL 48
>pdb|2ZBB|A Chain A, P43 Crystal Of Dctbp
pdb|2ZBB|B Chain B, P43 Crystal Of Dctbp
pdb|2ZBB|C Chain C, P43 Crystal Of Dctbp
pdb|2ZBB|D Chain D, P43 Crystal Of Dctbp
Length = 305
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 29/196 (14%)
Query: 7 ASSISRLQQLASVKGKKRTKVEAFSAYIWKIMVTSIDEKHGKCKMGWLVDGRCR--ILKH 64
A R Q LA + G+ R A + ++ ++ E+ + D R +L
Sbjct: 38 ARDYGRSQALAGLAGQSR-----IDASLKASLLRAVVERQRALPLVLADDAAIRGALLSP 92
Query: 65 ENPMSSYIGNVL-SLAV-GEASVTEL-KQGSISEIANRVHDSITKVTNEAHFLDLI---- 117
+ P I L +LA EA+V L + ++ A+ + + V N+ F D
Sbjct: 93 DRPSLDRINRKLEALATSAEAAVIYLIDRSGVAVAASNWQEPTSFVGNDYAFRDYFRLAV 152
Query: 118 -DWIECH--------RPGLMLARVVLGRDGPTVVVSSGRRFPVAELDF-GFGNPVLGAVS 167
D + H RPGL ++R V G GP V+ + F E D+ G P +
Sbjct: 153 RDGMAEHFAMGTVSNRPGLYISRRVDGPGGPLGVIVAKLEFDGVEADWQASGKP-----A 207
Query: 168 SIIERSGVGYINQRPS 183
+ +R G+ I PS
Sbjct: 208 YVTDRRGIVLITSLPS 223
>pdb|3E4P|A Chain A, Crystal Structure Of Malonate Occupied Dctb
pdb|3E4P|B Chain B, Crystal Structure Of Malonate Occupied Dctb
pdb|3E4Q|A Chain A, Crystal Structure Of Apo Dctb
pdb|3E4Q|B Chain B, Crystal Structure Of Apo Dctb
Length = 305
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 29/196 (14%)
Query: 7 ASSISRLQQLASVKGKKRTKVEAFSAYIWKIMVTSIDEKHGKCKMGWLVDGRCR--ILKH 64
A R Q LA + G+ R A + ++ ++ E+ + D R +L
Sbjct: 38 ARDYGRSQALAGLAGQSR-----IDASLKASLLRAVVERQRALPLVLADDAAIRGALLSP 92
Query: 65 ENPMSSYIGNVL-SLAV-GEASVTEL-KQGSISEIANRVHDSITKVTNEAHFLDLI---- 117
+ P I L +LA EA+V L + ++ A+ + + V N+ F D
Sbjct: 93 DRPSLDRINRKLEALATSAEAAVIYLIDRSGVAVAASNWQEPTSFVGNDYAFRDYFRLAV 152
Query: 118 -DWIECH--------RPGLMLARVVLGRDGPTVVVSSGRRFPVAELDF-GFGNPVLGAVS 167
D + H RPGL ++R V G GP V+ + F E D+ G P +
Sbjct: 153 RDGMAEHFAMGTVSKRPGLYISRRVDGPGGPLGVIVAKLEFDGVEADWQASGKP-----A 207
Query: 168 SIIERSGVGYINQRPS 183
+ +R G+ I PS
Sbjct: 208 YVTDRRGIVLITSLPS 223
>pdb|2V7T|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosyl-L-Homocysteine And Chloride Ion
pdb|2V7T|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosyl-L-Homocysteine And Chloride Ion
pdb|2V7T|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosyl-L-Homocysteine And Chloride Ion
pdb|2V7U|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosylmethionine And Chloride Ion
pdb|2V7U|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosylmethionine And Chloride Ion
pdb|2V7U|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosylmethionine And Chloride Ion
pdb|2V7W|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
5'-Fluorodeoxyadenosin
pdb|2V7W|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
5'-Fluorodeoxyadenosin
pdb|2V7W|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
5'-Fluorodeoxyadenosin
Length = 299
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 151 VAELDFGFGNPVLGAVSSIIERSGVGYINQRPSATCDGSWTVSAILWPELATALESDSI 209
V+ +D FGN + +E++G+GY R T DG A L P A A E +I
Sbjct: 206 VSAIDHPFGNVWTNIHRTDLEKAGIGY-GARLRLTLDGVLPFEAPLTPTFADAGEIGNI 263
>pdb|1RQP|A Chain A, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme
pdb|1RQP|B Chain B, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme
pdb|1RQP|C Chain C, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme
pdb|2C2W|A Chain A, The Fluorinase From Streptomyces Cattleya Is Also A
Chlorinase. Structure Of 5'-Chloro-5'-Deoxyadenosine
Crystallised In The Fluorinase.
pdb|2C2W|B Chain B, The Fluorinase From Streptomyces Cattleya Is Also A
Chlorinase. Structure Of 5'-Chloro-5'-Deoxyadenosine
Crystallised In The Fluorinase.
pdb|2C2W|C Chain C, The Fluorinase From Streptomyces Cattleya Is Also A
Chlorinase. Structure Of 5'-Chloro-5'-Deoxyadenosine
Crystallised In The Fluorinase.
pdb|2C4U|A Chain A, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|B Chain B, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|C Chain C, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|D Chain D, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|E Chain E, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C4U|F Chain F, Crystal Structure Of The Apo Form Of The 5'-Fluoro-5'-
Deoxyadenosine Synthase Enzyme From Streptomyces
Cattleya
pdb|2C5H|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-Adenosine
pdb|2CBX|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
Beta-D- Erythrofuranosyl-Adenosine
pdb|2CBX|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
Beta-D- Erythrofuranosyl-Adenosine
pdb|2CBX|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
Beta-D- Erythrofuranosyl-Adenosine
pdb|2C4T|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With An
Inhibitor, An Analogue Of S-Adenosyl Methionine
pdb|2C4T|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With An
Inhibitor, An Analogue Of S-Adenosyl Methionine
pdb|2C4T|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With An
Inhibitor, An Analogue Of S-Adenosyl Methionine
pdb|2CC2|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'deoxyadenosine
pdb|2CC2|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'deoxyadenosine
pdb|2CC2|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'deoxyadenosine
pdb|2V7V|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'-Fluorodeoxyadenosine
pdb|2V7V|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'-Fluorodeoxyadenosine
pdb|2V7V|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
5'-Fluorodeoxyadenosine
pdb|2C5B|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-5'deoxy- Fluoroadenosine.
pdb|2C5B|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-5'deoxy- Fluoroadenosine.
pdb|2C5B|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-5'deoxy- Fluoroadenosine.
pdb|2C5H|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-Adenosine
pdb|2C5H|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase From Streptomyces Cattleya Complexed With
2'deoxy-Adenosine
Length = 299
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 151 VAELDFGFGNPVLGAVSSIIERSGVGYINQRPSATCDGSWTVSAILWPELATALESDSI 209
V+ +D FGN + +E++G+GY R T DG A L P A A E +I
Sbjct: 206 VSAIDHPFGNVWTNIHRTDLEKAGIGY-GARLRLTLDGVLPFEAPLTPTFADAGEIGNI 263
>pdb|2V7X|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158a Mutant From Streptomyces Cattleya
Complexed With The Products, Fda And Met
pdb|2V7X|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158a Mutant From Streptomyces Cattleya
Complexed With The Products, Fda And Met
pdb|2V7X|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158a Mutant From Streptomyces Cattleya
Complexed With The Products, Fda And Met
Length = 299
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 151 VAELDFGFGNPVLGAVSSIIERSGVGYINQRPSATCDGSWTVSAILWPELATALESDSI 209
V+ +D FGN + +E++G+GY R T DG A L P A A E +I
Sbjct: 206 VSAIDHPFGNVWTNIHRTDLEKAGIGY-GARLRLTLDGVLPFEAPLTPTFADAGEIGNI 263
>pdb|3CQI|A Chain A, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae (Form B) Complex With Sulfate
pdb|3CQI|B Chain B, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae (Form B) Complex With Sulfate
pdb|3CQJ|A Chain A, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae (Form B) Complex With Zn2+
pdb|3CQJ|B Chain B, Crystal Structure Of L-Xylulose-5-Phosphate 3-Epimerase
Ulae (Form B) Complex With Zn2+
pdb|3CQK|A Chain A, Crystal Structure Of L-xylulose-5-phosphate 3-epimerase
Ulae (form B) Complex With Zn2+ And Sulfate
pdb|3CQK|B Chain B, Crystal Structure Of L-xylulose-5-phosphate 3-epimerase
Ulae (form B) Complex With Zn2+ And Sulfate
Length = 295
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 114 LDLIDWIECHRPGLMLARVVLGRDGPTVVVSSGRRFPVAELD 155
L +DW R L+ A V G P++ +S+ RRFP+ D
Sbjct: 58 LSRLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLGSED 99
>pdb|1RQR|A Chain A, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme, Product Complex
pdb|1RQR|B Chain B, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme, Product Complex
pdb|1RQR|C Chain C, Crystal Structure And Mechanism Of A Bacterial
Fluorinating Enzyme, Product Complex
Length = 299
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 151 VAELDFGFGNPVLGAVSSIIERSGVGYINQRPSATCDGSWTVSAILWPELATALESDSI 209
V+ +D FGN + +E++G+GY R T DG A L P A A E +I
Sbjct: 206 VSAIDHPFGNVWTNIHRTDLEKAGIGY-GARLRLTLDGVLPFEAPLTPTFADAGEIGNI 263
>pdb|3E4O|A Chain A, Crystal Structure Of Succinate Bound State Dctb
pdb|3E4O|B Chain B, Crystal Structure Of Succinate Bound State Dctb
Length = 305
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 27/195 (13%)
Query: 7 ASSISRLQQLASVKGKKRTKVEAFSAYIWKIMVTSIDEKHGKCKMGWLVDGRCR--ILKH 64
A R Q LA + G+ R A + ++ ++ E+ + D R +L
Sbjct: 38 ARDYGRSQALAGLAGQSR-----IDASLKASLLRAVVERQRALPLVLADDAAIRGALLSP 92
Query: 65 ENPMSSYIGNVL-SLAV-GEASVTEL-KQGSISEIANRVHDSITKVTNEAHFLDLI---- 117
+ P I L +LA EA+V L + ++ A+ + + V N+ F D
Sbjct: 93 DRPSLDRINRKLEALATSAEAAVIYLIDRSGVAVAASNWQEPTSFVGNDYAFRDYFRLAV 152
Query: 118 -DWIECH--------RPGLMLARVVLGRDGPTVVVSSGRRFPVAELDFGFGNPVLGAVSS 168
D H RPGL ++R V G GP V+ + F E D+ G +
Sbjct: 153 RDGXAEHFAXGTVSKRPGLYISRRVDGPGGPLGVIVAKLEFDGVEADWQAS----GKPAY 208
Query: 169 IIERSGVGYINQRPS 183
+ +R G+ I PS
Sbjct: 209 VTDRRGIVLITSLPS 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,142,211
Number of Sequences: 62578
Number of extensions: 232966
Number of successful extensions: 598
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 20
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)