BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039954
(578 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 27/161 (16%)
Query: 332 KLRELHILRCSKLQGTFPEHLPA------------LEKLSLYVYGCSKLESIAERLDNNT 379
+LREL I C +L PE L + L+ L L G L + L N
Sbjct: 151 RLRELSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN-- 207
Query: 380 SLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPE--GGLPCAKLTRLTILDC 437
L++++I N L L +H+L +L+E+ ++ C L ++P GG A L RL + DC
Sbjct: 208 -LKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKDC 263
Query: 438 KRLEALPKGLHNLTSLQELTIGG-----ELPSLEEDGLPTN 473
L LP +H LT L++L + G LPSL LP N
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPAN 303
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 82/227 (36%), Gaps = 39/227 (17%)
Query: 348 FPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQE 407
FP+ L L + L + + LET+ + L+ LP+ + +L +L+E
Sbjct: 96 FPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRE 154
Query: 408 IRIQKCRNLESFPEGGLPCAKLTR------LTILDCKRLE-----ALPKGLHNLTSLQEL 456
+ I+ C L PE P A L L RLE +LP + NL +L+ L
Sbjct: 155 LSIRACPELTELPE---PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 457 TIGGELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGT 516
I + G H L +L + C + ++PP +
Sbjct: 212 KIRNS--------------PLSALGPAIHHLPKLEELDLRGC-TALRNYPPIFGGR---- 252
Query: 517 ALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQLYNCPKLKYFP 563
A L L++ + NL L I L L L L C L P
Sbjct: 253 -----APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 76/198 (38%), Gaps = 24/198 (12%)
Query: 14 EEIYFTMEYTSEVNKQQSFSENLRHLSYIRGDYDGVQRFGDLYDIQ-------HLRTFLP 66
E +YF T+ S+ RH + R + R + + Q L+
Sbjct: 15 ENLYF-QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD 73
Query: 67 VMLSNSEPGYLA--------PSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLN 118
++ ++PG +A P + +L L+ ++ + ELPD+ L L
Sbjct: 74 LLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLT 133
Query: 119 LSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNL-AKLHHLKNSNTKSL----- 172
L+ +R LP S+ L L L + C EL +L + + A H N +SL
Sbjct: 134 LARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193
Query: 173 --EEMPVGIGRLTCLQTL 188
+P I L L++L
Sbjct: 194 GIRSLPASIANLQNLKSL 211
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 58 IQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYL 117
++HL + LS + + S+L +LL+LQ +++ G P + L YLR L
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVL 301
Query: 118 NLSGTEIRTLPESV-NKLYNLHSLLLE 143
N+SG ++ TL ESV + + NL +L+L+
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILD 328
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 80 SILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHS 139
+I + K L L G + ELP + +L LR L+LS + +LP + + L
Sbjct: 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297
Query: 140 LLLEDC------WELEKLC 152
D WE LC
Sbjct: 298 FYFFDNMVTTLPWEFGNLC 316
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 82 LPKLLK-LQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSL 140
LP +K L LRV L R+ LP +G L+Y + TLP L NL L
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
Query: 141 LLE 143
+E
Sbjct: 322 GVE 324
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 87 KLQRLRVFSLRGYRIPELPDSV-GDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLED 144
+L L L G ++ LP+ V L L YLNLS ++++LP V +KL L L L +
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-N 108
Query: 145 CWELEKLCADMGNLAKLHHLKNSN--TKSLEEMPVGI-GRLTCLQ 186
+L+ L G KL LK+ L+ +P G+ RLT LQ
Sbjct: 109 TNQLQSL--PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 11/115 (9%)
Query: 346 GTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHN-LGQ 404
G F E L +L +L L G +KL+S+ + N + T + L++LP+G+ + L Q
Sbjct: 46 GVFDE-LTSLTQLYL---GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101
Query: 405 LQEIRIQKCRNLESFPEGGLPCAKLTRLTILDC--KRLEALPKGLHN-LTSLQEL 456
L+E+ + L+S P+G KLT+L L +L+++P G+ + LTSLQ +
Sbjct: 102 LKELALNT-NQLQSLPDGVF--DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 43 RGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIP 102
+G + G FGDL I+ + N + + L KL +R+
Sbjct: 47 KGAFSG---FGDLEKIE--------ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95
Query: 103 ELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLE 143
P++ +L L+YL +S T I+ LP+ V+K+++L +LL+
Sbjct: 96 N-PEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLD 134
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 88 LQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLL 142
L +R +L G ++ ++ ++ +L L YL L+G ++++LP V +KL NL L+L
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 88 LQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLL 142
L +R +L G ++ ++ ++ +L L YL L+G ++++LP V +KL NL L+L
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 43 RGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIP 102
+G + G FGDL I+ + N + + L KL +R+
Sbjct: 47 KGAFSG---FGDLEKIE--------ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95
Query: 103 ELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLE 143
P++ +L L+YL +S T I+ LP+ V+K+++L +LL+
Sbjct: 96 N-PEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLD 134
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 90 RLRVFSLRGYRIPE---LPDSVGDLRYLRYLNLSGTE--IRTLPESVNKLYNLHSLLL 142
R+ L G +P+ +P S+ +L YL +L + G + +P ++ KL LH L +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
>pdb|3GTN|A Chain A, Crystal Structure Of Xync From Bacillus Subtilis 168
pdb|3GTN|B Chain B, Crystal Structure Of Xync From Bacillus Subtilis 168
pdb|3KL0|A Chain A, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL0|B Chain B, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL0|C Chain C, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL0|D Chain D, Crystal Structure Of The Glucuronoxylan Xylanohydrolase
Xync From Bacillus Subtilis
pdb|3KL3|A Chain A, Crystal Structure Of Ligand Bound Xync
pdb|3KL3|B Chain B, Crystal Structure Of Ligand Bound Xync
pdb|3KL3|C Chain C, Crystal Structure Of Ligand Bound Xync
pdb|3KL3|D Chain D, Crystal Structure Of Ligand Bound Xync
pdb|3KL5|A Chain A, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
pdb|3KL5|B Chain B, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
pdb|3KL5|C Chain C, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
pdb|3KL5|D Chain D, Structure Analysis Of A Xylanase From Glycosyl Hydrolase
Family Thirty: Carbohydrate Ligand Complexes Reveal This
Family Of Enzymes Unique Mechanism Of Substrate
Specificity And Recognition
Length = 401
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 232 RGYGGTNFPAWLGD 245
RG+GG N PAW GD
Sbjct: 17 RGFGGMNHPAWAGD 30
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 99 YRIPELPDSVGDLRYLR----YLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCAD 154
Y +P S+G L LR +LN+ EI P+ + + L +L+L+ ++ +
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 155 MGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
+ N L+ + SN + E+P IGRL L L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 99 YRIPELPDSVGDLRYLR----YLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCAD 154
Y +P S+G L LR +LN+ EI P+ + + L +L+L+ ++ +
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 155 MGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188
+ N L+ + SN + E+P IGRL L L
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 34 ENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRV 93
E L HL + + + F LR + + +S++ I L L+ L++
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLS---LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157
Query: 94 FSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSL 140
+ ++ LPD +LR L +L+LS ++ L P + N L +L L
Sbjct: 158 -AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 74 PGYLAPSILPKLLKLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLPESV 131
PG +P ++LR L +I EL PD+ LR L L L G +I LP+S+
Sbjct: 49 PGAFSP--------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 74 PGYLAPSILPKLLKLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLPESV 131
PG +P ++LR L +I EL PD+ LR L L L G +I LP+S+
Sbjct: 49 PGAFSP--------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 32/141 (22%)
Query: 61 LRTFLPVMLSNSEPGYLAPSILPKLLKLQRL--RVFSLRGYRIPELPDSVGDLRYLRYLN 118
LR + LS ++ L+ S + LQRL R +L+ I P LR L L+
Sbjct: 429 LRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDIS--PSPFRPLRNLTILD 486
Query: 119 LSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLH---------------- 162
LS I + E LLE LE L NLA+L
Sbjct: 487 LSNNNIANINED----------LLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLS 536
Query: 163 --HLKNSNTKSLEEMPVGIGR 181
H+ N + L+E+PVG+ +
Sbjct: 537 HLHILNLESNGLDEIPVGVFK 557
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 114 LRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKL 161
L++LNLSG +I+ L E + KL NL SL L +C E+ L A N+ KL
Sbjct: 95 LKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNAYRENVFKL 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,577,883
Number of Sequences: 62578
Number of extensions: 750958
Number of successful extensions: 1473
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1447
Number of HSP's gapped (non-prelim): 49
length of query: 578
length of database: 14,973,337
effective HSP length: 104
effective length of query: 474
effective length of database: 8,465,225
effective search space: 4012516650
effective search space used: 4012516650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)