Query 039954
Match_columns 578
No_of_seqs 259 out of 3236
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 03:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-36 3.4E-41 339.5 25.1 497 34-566 69-591 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.6E-36 1.7E-40 333.9 22.5 491 34-560 93-608 (968)
3 PLN03210 Resistant to P. syrin 100.0 3.3E-30 7.1E-35 288.2 25.5 431 1-561 490-945 (1153)
4 KOG4194 Membrane glycoprotein 99.9 3E-28 6.6E-33 232.5 5.4 362 89-575 78-445 (873)
5 KOG0472 Leucine-rich repeat pr 99.9 6E-30 1.3E-34 233.5 -11.9 139 394-560 402-541 (565)
6 KOG0618 Serine/threonine phosp 99.9 1.7E-27 3.7E-32 239.3 -2.2 416 82-578 37-485 (1081)
7 KOG0444 Cytoskeletal regulator 99.9 1.1E-27 2.4E-32 230.4 -5.6 383 36-555 9-395 (1255)
8 PLN03210 Resistant to P. syrin 99.9 1.8E-23 3.8E-28 234.4 21.6 347 83-569 552-916 (1153)
9 KOG4194 Membrane glycoprotein 99.9 8.6E-26 1.9E-30 215.9 2.5 391 59-562 78-483 (873)
10 KOG0444 Cytoskeletal regulator 99.9 2.2E-26 4.8E-31 221.5 -3.6 367 87-563 5-379 (1255)
11 KOG0472 Leucine-rich repeat pr 99.9 1.4E-27 3.1E-32 218.1 -14.1 416 78-533 103-539 (565)
12 KOG0618 Serine/threonine phosp 99.9 4E-25 8.8E-30 222.4 -5.1 109 54-170 40-148 (1081)
13 KOG4658 Apoptotic ATPase [Sign 99.9 3.8E-23 8.2E-28 219.6 7.3 295 1-349 483-788 (889)
14 PRK15387 E3 ubiquitin-protein 99.7 5.1E-16 1.1E-20 162.0 14.4 257 89-463 201-458 (788)
15 KOG4237 Extracellular matrix p 99.6 9.6E-18 2.1E-22 153.9 -2.9 101 91-192 69-173 (498)
16 PRK15387 E3 ubiquitin-protein 99.6 2.9E-15 6.3E-20 156.5 13.3 252 79-447 214-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.5 4.8E-14 1E-18 148.4 10.9 83 89-179 178-260 (754)
18 PRK15370 E3 ubiquitin-protein 99.5 6.9E-14 1.5E-18 147.2 11.3 74 380-460 347-424 (754)
19 KOG0617 Ras suppressor protein 99.5 5.8E-16 1.3E-20 125.9 -4.9 111 77-188 44-155 (264)
20 KOG4658 Apoptotic ATPase [Sign 99.5 5.2E-14 1.1E-18 150.4 6.9 132 53-193 517-652 (889)
21 KOG4237 Extracellular matrix p 99.5 1.8E-15 4E-20 139.2 -3.8 365 76-460 77-497 (498)
22 KOG0617 Ras suppressor protein 99.4 4.3E-15 9.4E-20 120.9 -2.8 161 83-288 27-188 (264)
23 cd00116 LRR_RI Leucine-rich re 99.3 1.2E-13 2.5E-18 135.2 -3.3 84 87-170 21-119 (319)
24 cd00116 LRR_RI Leucine-rich re 99.2 1.6E-12 3.4E-17 127.2 0.8 89 82-170 44-148 (319)
25 KOG4341 F-box protein containi 99.1 7.5E-13 1.6E-17 123.2 -7.4 288 250-564 139-444 (483)
26 PF14580 LRR_9: Leucine-rich r 99.0 1.2E-10 2.6E-15 99.8 2.4 81 87-170 17-99 (175)
27 KOG0532 Leucine-rich repeat (L 98.8 2E-10 4.2E-15 111.5 -3.9 107 79-188 88-194 (722)
28 KOG4341 F-box protein containi 98.8 2E-10 4.4E-15 107.3 -4.8 128 329-456 318-457 (483)
29 PRK15386 type III secretion pr 98.8 6.2E-08 1.4E-12 93.4 11.1 90 375-478 48-138 (426)
30 PF14580 LRR_9: Leucine-rich r 98.7 3.4E-09 7.4E-14 90.9 1.8 103 84-189 36-146 (175)
31 KOG3207 Beta-tubulin folding c 98.7 3.2E-09 7E-14 100.0 0.8 216 300-560 119-339 (505)
32 COG4886 Leucine-rich repeat (L 98.7 2.3E-08 5E-13 100.6 6.8 181 82-285 109-290 (394)
33 KOG1909 Ran GTPase-activating 98.7 2.4E-09 5.3E-14 98.0 -1.4 88 83-170 24-131 (382)
34 PF13855 LRR_8: Leucine rich r 98.6 3.8E-08 8.3E-13 69.1 4.3 58 89-146 1-60 (61)
35 KOG0532 Leucine-rich repeat (L 98.6 7.6E-10 1.6E-14 107.5 -5.9 99 87-188 73-171 (722)
36 KOG1259 Nischarin, modulator o 98.6 9.1E-09 2E-13 92.2 0.4 129 108-283 280-410 (490)
37 KOG3207 Beta-tubulin folding c 98.6 1.4E-08 2.9E-13 95.9 0.8 36 248-283 300-337 (505)
38 COG4886 Leucine-rich repeat (L 98.5 8.1E-08 1.8E-12 96.7 5.4 84 93-178 97-181 (394)
39 PRK15386 type III secretion pr 98.4 1.1E-06 2.4E-11 84.9 9.9 151 401-576 50-207 (426)
40 KOG1259 Nischarin, modulator o 98.4 6.6E-08 1.4E-12 86.8 1.3 104 81-188 299-404 (490)
41 PLN03150 hypothetical protein; 98.4 2.5E-07 5.4E-12 97.7 5.0 92 90-181 419-512 (623)
42 PF13855 LRR_8: Leucine rich r 98.4 1.2E-07 2.6E-12 66.5 1.5 59 112-170 1-60 (61)
43 PLN03150 hypothetical protein; 98.4 6E-07 1.3E-11 94.8 6.8 98 75-172 428-528 (623)
44 KOG2120 SCF ubiquitin ligase, 98.3 2E-08 4.3E-13 90.0 -5.6 58 113-170 186-245 (419)
45 PF12799 LRR_4: Leucine Rich r 98.3 8.4E-07 1.8E-11 56.8 3.3 40 89-128 1-40 (44)
46 KOG1909 Ran GTPase-activating 98.3 5.2E-08 1.1E-12 89.5 -3.4 192 248-462 91-310 (382)
47 PF12799 LRR_4: Leucine Rich r 98.0 4.8E-06 1E-10 53.3 2.0 35 112-146 1-35 (44)
48 KOG0531 Protein phosphatase 1, 97.9 2.6E-06 5.5E-11 86.0 0.9 103 82-188 88-191 (414)
49 KOG3665 ZYG-1-like serine/thre 97.9 1.1E-06 2.5E-11 92.4 -2.0 93 77-170 135-231 (699)
50 KOG3665 ZYG-1-like serine/thre 97.9 7.8E-06 1.7E-10 86.2 3.8 135 34-175 122-266 (699)
51 KOG1859 Leucine-rich repeat pr 97.9 5.9E-07 1.3E-11 90.4 -4.4 93 82-177 102-226 (1096)
52 KOG2120 SCF ubiquitin ligase, 97.8 5.8E-07 1.3E-11 80.8 -5.8 161 375-556 206-373 (419)
53 KOG0531 Protein phosphatase 1, 97.7 4.9E-06 1.1E-10 84.0 -1.0 87 375-466 114-202 (414)
54 KOG2982 Uncharacterized conser 97.6 1.4E-05 3E-10 72.2 0.2 87 84-170 65-157 (418)
55 KOG4579 Leucine-rich repeat (L 97.5 1.5E-05 3.1E-10 63.5 -1.0 83 87-170 51-134 (177)
56 KOG4579 Leucine-rich repeat (L 97.5 2.3E-05 5E-10 62.4 -0.5 77 77-154 64-141 (177)
57 KOG1644 U2-associated snRNP A' 97.4 0.00023 5.1E-09 60.9 4.4 57 113-170 43-99 (233)
58 KOG1859 Leucine-rich repeat pr 97.4 3.5E-05 7.6E-10 78.1 -0.7 85 83-171 181-266 (1096)
59 KOG1947 Leucine rich repeat pr 97.3 1.1E-05 2.4E-10 83.9 -4.7 80 371-460 287-371 (482)
60 KOG1644 U2-associated snRNP A' 97.3 0.00024 5.2E-09 60.8 4.1 81 88-170 41-124 (233)
61 COG5238 RNA1 Ran GTPase-activa 97.2 4.2E-05 9.1E-10 68.2 -1.7 88 83-170 24-131 (388)
62 KOG2982 Uncharacterized conser 97.2 0.00028 6.1E-09 64.0 3.3 176 377-563 69-266 (418)
63 KOG1947 Leucine rich repeat pr 96.8 7E-05 1.5E-09 77.8 -4.9 39 524-562 403-443 (482)
64 KOG2123 Uncharacterized conser 96.7 0.00018 4E-09 64.5 -1.8 81 85-166 36-124 (388)
65 KOG2123 Uncharacterized conser 96.7 0.00016 3.5E-09 64.8 -2.6 101 87-190 17-124 (388)
66 COG5238 RNA1 Ran GTPase-activa 96.6 0.00029 6.2E-09 63.1 -1.7 65 248-312 213-282 (388)
67 KOG2739 Leucine-rich acidic nu 96.4 0.0018 4E-08 58.0 2.0 59 87-145 63-126 (260)
68 PF00560 LRR_1: Leucine Rich R 96.3 0.0019 4.1E-08 34.2 1.1 18 114-131 2-19 (22)
69 PF00560 LRR_1: Leucine Rich R 96.1 0.0028 6.2E-08 33.5 1.0 22 90-111 1-22 (22)
70 KOG2739 Leucine-rich acidic nu 96.0 0.002 4.4E-08 57.7 0.4 82 87-170 41-127 (260)
71 PF13306 LRR_5: Leucine rich r 95.8 0.065 1.4E-06 44.0 8.8 9 378-386 11-19 (129)
72 PF13306 LRR_5: Leucine rich r 95.3 0.11 2.5E-06 42.5 8.5 37 398-436 7-44 (129)
73 PF13504 LRR_7: Leucine rich r 94.6 0.025 5.5E-07 27.6 1.6 15 90-104 2-16 (17)
74 PF13504 LRR_7: Leucine rich r 94.6 0.021 4.6E-07 27.9 1.2 17 112-128 1-17 (17)
75 KOG0473 Leucine-rich repeat pr 93.4 0.0021 4.5E-08 56.4 -6.2 85 87-172 40-124 (326)
76 smart00369 LRR_TYP Leucine-ric 91.9 0.12 2.6E-06 28.5 1.7 19 112-130 2-20 (26)
77 smart00370 LRR Leucine-rich re 91.9 0.12 2.6E-06 28.5 1.7 19 112-130 2-20 (26)
78 KOG3864 Uncharacterized conser 91.4 0.024 5.3E-07 48.9 -2.2 84 250-341 102-186 (221)
79 KOG3864 Uncharacterized conser 91.1 0.03 6.5E-07 48.4 -2.0 70 484-561 121-191 (221)
80 KOG0473 Leucine-rich repeat pr 90.6 0.02 4.4E-07 50.4 -3.4 81 106-188 36-116 (326)
81 smart00370 LRR Leucine-rich re 87.7 0.35 7.5E-06 26.6 1.4 21 88-108 1-21 (26)
82 smart00369 LRR_TYP Leucine-ric 87.7 0.35 7.5E-06 26.6 1.4 21 88-108 1-21 (26)
83 smart00367 LRR_CC Leucine-rich 87.1 0.4 8.6E-06 26.4 1.4 17 545-561 1-17 (26)
84 PF13516 LRR_6: Leucine Rich r 85.0 0.98 2.1E-05 24.2 2.2 18 135-152 2-19 (24)
85 smart00365 LRR_SD22 Leucine-ri 78.1 1.7 3.7E-05 23.9 1.6 16 112-127 2-17 (26)
86 smart00364 LRR_BAC Leucine-ric 77.6 1.5 3.2E-05 24.1 1.2 17 90-106 3-19 (26)
87 PF05725 FNIP: FNIP Repeat; I 68.5 7.7 0.00017 24.6 3.1 31 546-577 12-42 (44)
88 smart00368 LRR_RI Leucine rich 57.3 8 0.00017 21.6 1.5 12 113-124 3-14 (28)
89 KOG3763 mRNA export factor TAP 34.9 18 0.0004 36.9 1.1 58 376-433 241-307 (585)
90 KOG3763 mRNA export factor TAP 22.1 54 0.0012 33.7 1.8 64 110-173 216-284 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-36 Score=339.49 Aligned_cols=497 Identities=16% Similarity=0.198 Sum_probs=272.8
Q ss_pred CCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhc-ccCcccEEEecCCCCC-ccCCccccc
Q 039954 34 ENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLL-KLQRLRVFSLRGYRIP-ELPDSVGDL 111 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~-~lp~~i~~l 111 (578)
.+++.+.+..+.+.... ...+..+++|++|.+.+ |.+...+|..++ .+++||+|++++|.++ .+|. +.+
T Consensus 69 ~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls~------n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l 139 (968)
T PLN00113 69 SRVVSIDLSGKNISGKI-SSAIFRLPYIQTINLSN------NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI 139 (968)
T ss_pred CcEEEEEecCCCccccC-ChHHhCCCCCCEEECCC------CccCCcCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence 46778888776654432 35677889999996543 455678888888 9999999999999885 3453 468
Q ss_pred ccccEEeccCCCcc-cccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccccCc
Q 039954 112 RYLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCN 190 (578)
Q Consensus 112 ~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~ 190 (578)
++|++|++++|.+. .+|..++.+++|++|++++|.....+|..++++++|++|++++|.+.+.+|..++++++|+.|..
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 88999999998875 67888888999999999988766778888888999999999888877778888888888888854
Q ss_pred ceeecCCCCCccccccccccccceeeccccC----------ccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCC
Q 039954 191 FVVGNGSGSGLSELKLLMHLRGALEISKLEN----------VKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCD 260 (578)
Q Consensus 191 ~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 260 (578)
..... .......+..+.+++ .+.+....- +..+.............+|.++.. +++|+.|++++|.
T Consensus 220 ~~n~l-~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~ 295 (968)
T PLN00113 220 GYNNL-SGEIPYEIGGLTSLN-HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS--LQKLISLDLSDNS 295 (968)
T ss_pred cCCcc-CCcCChhHhcCCCCC-EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh--ccCcCEEECcCCe
Confidence 33221 122333344444444 333322110 000000000000001122333322 4455555555554
Q ss_pred CCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecc
Q 039954 261 MCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHIL 339 (578)
Q Consensus 261 ~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 339 (578)
+.+.+| .+..+++|+.|++++|......+.. ...+++|+.|++.++.... ..+..++.+++|+.|+++
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~------~~~l~~L~~L~L~~n~l~~-----~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVA------LTSLPRLQVLQLWSNKFSG-----EIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChh------HhcCCCCCEEECcCCCCcC-----cCChHHhCCCCCcEEECC
Confidence 444433 3444555555555444322222211 1124555555555443111 111124445555555555
Q ss_pred cccccccCCCCCCCCCcceE-EEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccc
Q 039954 340 RCSKLQGTFPEHLPALEKLS-LYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLES 418 (578)
Q Consensus 340 ~~~~l~~~~~~~l~~l~~L~-l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 418 (578)
+| .+.+.+|..+..+..|. +...++...+.+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.
T Consensus 365 ~n-~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 365 TN-NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred CC-eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence 55 44444444333222222 12222222233555555666666666666655555555566666666666666655555
Q ss_pred cCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCC--CCCCcceeec--------cccccCC
Q 039954 419 FPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGL--PTNLHSMIER--------GRGFHRF 487 (578)
Q Consensus 419 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~--~~~l~~l~~~--------~~~~~~l 487 (578)
++.....+++|+.|++++|...+.+|..+ ..++|+.|++++ ++.......+ .++|+.+.+. +..+..+
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 55555556666666666666555555443 345666666666 4432221111 1233334332 2233445
Q ss_pred CcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccccCCCCCcceEEeccCCCCcccCCCC
Q 039954 488 SSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQLYNCPKLKYFPEKG 566 (578)
Q Consensus 488 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 566 (578)
++|+.|++++ |.....+|... ..+++|++|++++|.....+|..+..+++|+.+++++|+-...+|..+
T Consensus 523 ~~L~~L~Ls~-N~l~~~~p~~~---------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 523 KKLVSLDLSH-NQLSGQIPASF---------SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred cCCCEEECCC-CcccccCChhH---------hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcc
Confidence 5566666655 22223333322 344566666666654434556555666666666666654334455443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.6e-36 Score=333.95 Aligned_cols=491 Identities=18% Similarity=0.188 Sum_probs=239.1
Q ss_pred CCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCC-ccCCcccccc
Q 039954 34 ENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIP-ELPDSVGDLR 112 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~ 112 (578)
+.++.+.+..+.+...-....+..+++||+|.+.+ |.+...+|. ..+++|++|++++|.+. .+|..++.++
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~------n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN------NNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcC------CccccccCc--cccCCCCEEECcCCcccccCChHHhcCC
Confidence 35667776665543211011233566666664432 222222222 23445555555555543 3344455555
Q ss_pred cccEEeccCCCcc-cccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccccCcc
Q 039954 113 YLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNF 191 (578)
Q Consensus 113 ~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~ 191 (578)
+|++|++++|.+. .+|..++++++|++|++++|.....+|..++.+++|++|++++|.+.+.+|..++++++|+.|+..
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 5555555555432 444445555555555555554444445555555555555555555444444445555555544322
Q ss_pred eeecCCCCCccccccccccccceeecccc----------CccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCC
Q 039954 192 VVGNGSGSGLSELKLLMHLRGALEISKLE----------NVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDM 261 (578)
Q Consensus 192 ~~~~~~~~~~~~L~~l~~l~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 261 (578)
.+.. .......+..+.+++ .+.+.... .+..+.............+|.++.. +++|+.|++++|.+
T Consensus 245 ~n~l-~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--l~~L~~L~l~~n~~ 320 (968)
T PLN00113 245 YNNL-TGPIPSSLGNLKNLQ-YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ--LQNLEILHLFSNNF 320 (968)
T ss_pred Ccee-ccccChhHhCCCCCC-EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC--CCCCcEEECCCCcc
Confidence 2111 011111222222222 11111100 0000000000011112235555544 67788888888877
Q ss_pred CCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeeccc
Q 039954 262 CTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILR 340 (578)
Q Consensus 262 ~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (578)
.+..+ .+..+++|+.|++++|......+..+ ..+++|+.|+++++..... .+..+..+++|+.|++.+
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l------~~~~~L~~L~Ls~n~l~~~-----~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL------GKHNNLTVLDLSTNNLTGE-----IPEGLCSSGNLFKLILFS 389 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCCCCcCcCChHH------hCCCCCcEEECCCCeeEee-----CChhHhCcCCCCEEECcC
Confidence 76655 66777788888887776433333222 1256677777766532111 111134455555566555
Q ss_pred ccccccCCCCCCCCCcceE-EEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCcccc
Q 039954 341 CSKLQGTFPEHLPALEKLS-LYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESF 419 (578)
Q Consensus 341 ~~~l~~~~~~~l~~l~~L~-l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 419 (578)
| .+.+.+|..+..+..|+ +.+.++...+.+|..+.++++|+.|++++|.....++..+..+++|++|++++|...+.+
T Consensus 390 n-~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 468 (968)
T PLN00113 390 N-SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468 (968)
T ss_pred C-EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec
Confidence 5 44444444333322222 112222222234444555555555555555444444444445555555555555544444
Q ss_pred CCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCC--CCCCCcceeec--------cccccCCC
Q 039954 420 PEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDG--LPTNLHSMIER--------GRGFHRFS 488 (578)
Q Consensus 420 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~--~~~~l~~l~~~--------~~~~~~l~ 488 (578)
|... ..++|+.|++++|+..+.+|..+..+++|++|++++ .+....... -..+|+.+.+. +..+..++
T Consensus 469 p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 547 (968)
T PLN00113 469 PDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547 (968)
T ss_pred Cccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc
Confidence 4332 234555555555554444444455555555555554 332211111 11234444332 23567789
Q ss_pred cccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccccCCCCCcceEEeccCCCCc
Q 039954 489 SLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQLYNCPKLK 560 (578)
Q Consensus 489 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~ 560 (578)
+|+.|++++ |.....+|... ..+++|+.|++++|+-...+|. ...+.++....+.+++.+.
T Consensus 548 ~L~~L~Ls~-N~l~~~~p~~l---------~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 548 VLSQLDLSQ-NQLSGEIPKNL---------GNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLC 608 (968)
T ss_pred cCCEEECCC-CcccccCChhH---------hcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCcccc
Confidence 999999999 55556777654 5678999999999876667884 3445556666666765554
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=3.3e-30 Score=288.23 Aligned_cols=431 Identities=19% Similarity=0.266 Sum_probs=288.9
Q ss_pred CcchHHHHHHHhcccce------EEecccccc---ccccCCCCCeeEEEeeeCCCCccc-cccCccccccccEEeeeccC
Q 039954 1 MHDLISDLAQWAAEEIY------FTMEYTSEV---NKQQSFSENLRHLSYIRGDYDGVQ-RFGDLYDIQHLRTFLPVMLS 70 (578)
Q Consensus 1 mHd~v~d~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~r~ls~~~~~~~~~~-~~~~~~~~~~Lr~L~~~~~~ 70 (578)
|||++||||+++++++. .+....++. -.......+++.+++......... ...+|.++++|+.|.+....
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 99999999999998653 111111000 011223356777777655443221 23568889999999876543
Q ss_pred CCCCCCCCcCchhhhccc-CcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhH
Q 039954 71 NSEPGYLAPSILPKLLKL-QRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELE 149 (578)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~ 149 (578)
....+.....+|..+..+ ..||.|++.++.+..+|..+ ...+|+.|++.++.+..+|.++..+++|+.|+++++..+.
T Consensus 570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648 (1153)
T ss_pred ccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence 212233445677777754 56999999999999999887 5799999999999999999999999999999999987777
Q ss_pred HhhHHHhccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhh
Q 039954 150 KLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAK 229 (578)
Q Consensus 150 ~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~ 229 (578)
.+|. ++.+++|+.|++++|.....+|..++.+++|+.|....+ ..+
T Consensus 649 ~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c--------------~~L------------------- 694 (1153)
T PLN03210 649 EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC--------------ENL------------------- 694 (1153)
T ss_pred cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC--------------CCc-------------------
Confidence 8875 888999999999999877888877777766666621110 000
Q ss_pred hhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeee
Q 039954 230 EARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHF 309 (578)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 309 (578)
..+|..+ .+++|+.|++++|.....+|.. .++|++|++.++. ++.++.
T Consensus 695 -------~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~-i~~lP~------------------- 742 (1153)
T PLN03210 695 -------EILPTGI---NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA-IEEFPS------------------- 742 (1153)
T ss_pred -------CccCCcC---CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc-cccccc-------------------
Confidence 0111111 1445555555555444333311 2345555554432 111110
Q ss_pred ccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecC
Q 039954 310 EDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNC 389 (578)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~ 389 (578)
...+++|++|.+.++.. . .+...+..+. +......++|+.|++++|
T Consensus 743 -----------------~~~l~~L~~L~l~~~~~-~-~l~~~~~~l~---------------~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 743 -----------------NLRLENLDELILCEMKS-E-KLWERVQPLT---------------PLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred -----------------cccccccccccccccch-h-hccccccccc---------------hhhhhccccchheeCCCC
Confidence 11355666666655421 1 1111111110 001123458999999999
Q ss_pred CCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccC
Q 039954 390 GNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEED 468 (578)
Q Consensus 390 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~ 468 (578)
..+..+|..+..+++|+.|++++|..++.+|... .+++|+.|++++|..+..+|.. .++|++|++++ .++.+|.
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~- 863 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPW- 863 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChH-
Confidence 8888899999999999999999999998888765 6899999999999888877653 46899999998 7776653
Q ss_pred CCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccc-------
Q 039954 469 GLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSS------- 541 (578)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~------- 541 (578)
.+..+++|+.|++.+ |+.+..++... ..+++|+.+++++|+.++.++..
T Consensus 864 --------------si~~l~~L~~L~L~~-C~~L~~l~~~~---------~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~ 919 (1153)
T PLN03210 864 --------------WIEKFSNLSFLDMNG-CNNLQRVSLNI---------SKLKHLETVDFSDCGALTEASWNGSPSEVA 919 (1153)
T ss_pred --------------HHhcCCCCCEEECCC-CCCcCccCccc---------ccccCCCeeecCCCcccccccCCCCchhhh
Confidence 467789999999999 78888888754 46688999999999988865420
Q ss_pred ------cCCCCCcceEEeccCCCCcc
Q 039954 542 ------IVDLQNLTILQLYNCPKLKY 561 (578)
Q Consensus 542 ------~~~l~~L~~L~l~~c~~l~~ 561 (578)
...+++...+...+|.++..
T Consensus 920 ~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 920 MATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred hhcccccccCCchhccccccccCCCc
Confidence 12234445566677766654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=3e-28 Score=232.47 Aligned_cols=362 Identities=17% Similarity=0.220 Sum_probs=230.4
Q ss_pred CcccEEEecCCCCCcc-CCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccC
Q 039954 89 QRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNS 167 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~ 167 (578)
..-+.||+++|.+..+ ++.|.++++|+.+++.+|.++.||.......+|+.|+|.+|.+...-.+.+..++.|+.||++
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3467799999998776 677889999999999999999999888888889999999995555445568889999999999
Q ss_pred CCCcccccCCC-CCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCC
Q 039954 168 NTKSLEEMPVG-IGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDS 246 (578)
Q Consensus 168 ~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (578)
.|. +..+|.. +.+-.++++|.... +...++. . ..+ .
T Consensus 158 rN~-is~i~~~sfp~~~ni~~L~La~------------------------N~It~l~------------~----~~F--~ 194 (873)
T KOG4194|consen 158 RNL-ISEIPKPSFPAKVNIKKLNLAS------------------------NRITTLE------------T----GHF--D 194 (873)
T ss_pred hch-hhcccCCCCCCCCCceEEeecc------------------------ccccccc------------c----ccc--c
Confidence 998 5555432 44444444441100 0000000 0 000 1
Q ss_pred CCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCC
Q 039954 247 SFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQ 325 (578)
Q Consensus 247 ~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 325 (578)
++.+|..|.++.|.++...+ .++.+++|+.|++..|. +..+. +..
T Consensus 195 ~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive----------------------------~lt----- 240 (873)
T KOG4194|consen 195 SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVE----------------------------GLT----- 240 (873)
T ss_pred ccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeeh----------------------------hhh-----
Confidence 14466666666666654433 55556666666665553 11110 000
Q ss_pred ccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCc
Q 039954 326 GVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQL 405 (578)
Q Consensus 326 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 405 (578)
|.++++|+.|.+..| .+. .+.. ..|-.|.++++|++..|+....-..++-++++|
T Consensus 241 -FqgL~Sl~nlklqrN-~I~-kL~D----------------------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 241 -FQGLPSLQNLKLQRN-DIS-KLDD----------------------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL 295 (873)
T ss_pred -hcCchhhhhhhhhhc-Ccc-cccC----------------------cceeeecccceeecccchhhhhhcccccccchh
Confidence 445666666666655 232 1111 023445577777777764443334455577788
Q ss_pred ceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccc
Q 039954 406 QEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGF 484 (578)
Q Consensus 406 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~ 484 (578)
+.|++++|.+...-+..+..+++|+.|+|++|+...--++.|..+..|++|+|++ ++..+-++ .|
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~--------------af 361 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG--------------AF 361 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh--------------HH
Confidence 8888877665555566667778888888888775555556677778888888887 66665543 56
Q ss_pred cCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCcccccc-ccCCCCCcceEEeccCCCCcccC
Q 039954 485 HRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSS-SIVDLQNLTILQLYNCPKLKYFP 563 (578)
Q Consensus 485 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l~ 563 (578)
.++++|++||++. +.+....++. ...+.-+++|+.|++.+ +++++||+ ++.++++|++|++.+ |.+.++-
T Consensus 362 ~~lssL~~LdLr~--N~ls~~IEDa-----a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq 432 (873)
T KOG4194|consen 362 VGLSSLHKLDLRS--NELSWCIEDA-----AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQ 432 (873)
T ss_pred HHhhhhhhhcCcC--CeEEEEEecc-----hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeec
Confidence 7778888888877 3333333221 22334577888888888 58888887 888888888888887 7777776
Q ss_pred CCCCCC-cccceE
Q 039954 564 EKGLPS-SLLELD 575 (578)
Q Consensus 564 ~~~~~~-sL~~l~ 575 (578)
+..+-+ .|+.|-
T Consensus 433 ~nAFe~m~Lk~Lv 445 (873)
T KOG4194|consen 433 PNAFEPMELKELV 445 (873)
T ss_pred ccccccchhhhhh
Confidence 665532 454443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=6e-30 Score=233.52 Aligned_cols=139 Identities=24% Similarity=0.307 Sum_probs=99.6
Q ss_pred ccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCCCC
Q 039954 394 TLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGLPT 472 (578)
Q Consensus 394 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~ 472 (578)
++|..+..+..+.+.-+..++.++.+|..+..+++|..|++++|. +..+|..+..+-.|+.++++. ++..+|.
T Consensus 402 elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~----- 475 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFRMLPE----- 475 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccccccchH-----
Confidence 334433334444444444445666666667778889999998764 778888888888899999988 7766653
Q ss_pred CCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccccCCCCCcceEE
Q 039954 473 NLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQ 552 (578)
Q Consensus 473 ~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~ 552 (578)
.+.....|+.+-.++ +.+..++... +..+.+|+.||+.+ +.+..||+.++++++|++|+
T Consensus 476 ----------~~y~lq~lEtllas~--nqi~~vd~~~--------l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 476 ----------CLYELQTLETLLASN--NQIGSVDPSG--------LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLE 534 (565)
T ss_pred ----------HHhhHHHHHHHHhcc--ccccccChHH--------hhhhhhcceeccCC-CchhhCChhhccccceeEEE
Confidence 223334455555544 6777777653 36788999999999 69999999999999999999
Q ss_pred eccCCCCc
Q 039954 553 LYNCPKLK 560 (578)
Q Consensus 553 l~~c~~l~ 560 (578)
++| |.++
T Consensus 535 L~g-Npfr 541 (565)
T KOG0472|consen 535 LDG-NPFR 541 (565)
T ss_pred ecC-CccC
Confidence 999 5555
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=1.7e-27 Score=239.29 Aligned_cols=416 Identities=23% Similarity=0.277 Sum_probs=269.6
Q ss_pred hhhhc-ccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhcccc
Q 039954 82 LPKLL-KLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAK 160 (578)
Q Consensus 82 ~~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 160 (578)
|-.|. +...|++||+++|.+..+|..|..+.+|+.|+++.|.|...|.++.++++|++|+|..| ....+|.++..+++
T Consensus 37 pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 37 PLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKN 115 (1081)
T ss_pred chHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhc
Confidence 34443 55559999999999999999999999999999999999999988999999999999988 78889999999999
Q ss_pred CcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccc--cccccceeeccccCccccchhhhhcCCCCCC
Q 039954 161 LHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLL--MHLRGALEISKLENVKDVGNAKEARGYGGTN 238 (578)
Q Consensus 161 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (578)
|+.|+++.|. ...+|..+..+..+..+...... .+..++.. +++ .+..+.+. ..
T Consensus 116 l~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~-----~~~~lg~~~ik~~--~l~~n~l~----------------~~ 171 (1081)
T KOG0618|consen 116 LQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNE-----KIQRLGQTSIKKL--DLRLNVLG----------------GS 171 (1081)
T ss_pred ccccccchhc-cCCCchhHHhhhHHHHHhhhcch-----hhhhhccccchhh--hhhhhhcc----------------cc
Confidence 9999999998 77788877777776666322210 01111111 111 11111110 11
Q ss_pred CCCCcCCCCCCcee-EEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccc
Q 039954 239 FPAWLGDSSFSNLV-TLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWED 317 (578)
Q Consensus 239 ~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 317 (578)
++.. ..+++ .|++.+|.+. ...+..+++|+.+....+.... +.. .-++++.|+..+++-...
T Consensus 172 ~~~~-----i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~-l~~---------~g~~l~~L~a~~n~l~~~ 234 (1081)
T KOG0618|consen 172 FLID-----IYNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLSE-LEI---------SGPSLTALYADHNPLTTL 234 (1081)
T ss_pred hhcc-----hhhhheeeecccchhh--hhhhhhccchhhhhhhhcccce-EEe---------cCcchheeeeccCcceee
Confidence 2221 22333 3777777765 2345556666666555443211 110 135566666666553311
Q ss_pred cccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCccccc
Q 039954 318 WIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPS 397 (578)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~ 397 (578)
. . ...-.+|++++++++ +++ .+|.+...+..|+....+.+.+..+|..+....+|+.|.+..| .++.+|.
T Consensus 235 ~-~------~p~p~nl~~~dis~n-~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~ 304 (1081)
T KOG0618|consen 235 D-V------HPVPLNLQYLDISHN-NLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPP 304 (1081)
T ss_pred c-c------ccccccceeeecchh-hhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCC
Confidence 1 0 122346777777776 565 5666666666666555666666666666666666666666665 4555555
Q ss_pred CCCCCCCcceEEeccCCCccccCCC--------------------------CcCCCCccEEEeCcCCCCCccccccCCCC
Q 039954 398 GLHNLGQLQEIRIQKCRNLESFPEG--------------------------GLPCAKLTRLTILDCKRLEALPKGLHNLT 451 (578)
Q Consensus 398 ~~~~l~~L~~L~l~~~~~~~~~~~~--------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 451 (578)
....+.+|++|++..|. +..+|+. -..++.|+.|++.+|.........+.+.+
T Consensus 305 ~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred cccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 55566666666666643 2222211 11246788888888887776666788888
Q ss_pred CccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEec
Q 039954 452 SLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMIN 530 (578)
Q Consensus 452 ~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 530 (578)
.||.|++++ ++..+|.. .+.++..|++|+++| +++..+|+.. ...+.|++|...
T Consensus 384 hLKVLhLsyNrL~~fpas--------------~~~kle~LeeL~LSG--NkL~~Lp~tv---------a~~~~L~tL~ah 438 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPAS--------------KLRKLEELEELNLSG--NKLTTLPDTV---------ANLGRLHTLRAH 438 (1081)
T ss_pred ceeeeeecccccccCCHH--------------HHhchHHhHHHhccc--chhhhhhHHH---------HhhhhhHHHhhc
Confidence 888888888 77777654 356677788888888 7778887655 566777777777
Q ss_pred cCCCccccccccCCCCCcceEEeccCCCCcccC-CCCCC-CcccceEecC
Q 039954 531 NFPNLERLSSSIVDLQNLTILQLYNCPKLKYFP-EKGLP-SSLLELDINR 578 (578)
Q Consensus 531 ~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~-~sL~~l~l~~ 578 (578)
. +.+...| .+..+++|+.+|++ ||+|+.+. ....| +.|++|++.+
T Consensus 439 s-N~l~~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 439 S-NQLLSFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSG 485 (1081)
T ss_pred C-Cceeech-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccC
Confidence 7 5777777 66777788888885 47777632 23456 6777777753
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=1.1e-27 Score=230.37 Aligned_cols=383 Identities=18% Similarity=0.262 Sum_probs=242.5
Q ss_pred eeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCccccccccc
Q 039954 36 LRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLR 115 (578)
Q Consensus 36 ~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~ 115 (578)
+|-+.+..+.+..-.-+.+...+.+++-|.+-+. ..-.+|..+..+.+|+.|.+.+|++..+-..+..++.||
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-------~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-------KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechh-------hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 4444444444433222333444445554444221 123445555555555555555555544444455555555
Q ss_pred EEeccCCCcc--cccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccccCccee
Q 039954 116 YLNLSGTEIR--TLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVV 193 (578)
Q Consensus 116 ~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~ 193 (578)
.+.+++|.+. .+|..+..+..|.+||+++| .+.+.|..+..-+++-+|++++|. +..+|..+
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~l-------------- 145 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSL-------------- 145 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchH--------------
Confidence 5555555542 45555555555555555555 445555555555555555555555 44444321
Q ss_pred ecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCC
Q 039954 194 GNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPS 273 (578)
Q Consensus 194 ~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 273 (578)
. .++..|-.|++++|.+...+|.+..+.+
T Consensus 146 --------------------------------------------------f-inLtDLLfLDLS~NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 146 --------------------------------------------------F-INLTDLLFLDLSNNRLEMLPPQIRRLSM 174 (1255)
T ss_pred --------------------------------------------------H-HhhHhHhhhccccchhhhcCHHHHHHhh
Confidence 0 0144566677777777655667777778
Q ss_pred cceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCC
Q 039954 274 LTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLP 353 (578)
Q Consensus 274 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 353 (578)
|++|.+++|+.... .+.. +.++.+|+.|++++..+-...+|..+.
T Consensus 175 LqtL~Ls~NPL~hf--------------------QLrQ---------------LPsmtsL~vLhms~TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHF--------------------QLRQ---------------LPSMTSLSVLHMSNTQRTLDNIPTSLD 219 (1255)
T ss_pred hhhhhcCCChhhHH--------------------HHhc---------------CccchhhhhhhcccccchhhcCCCchh
Confidence 88888877762110 0000 334556666666664333335666666
Q ss_pred CCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEE
Q 039954 354 ALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLT 433 (578)
Q Consensus 354 ~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 433 (578)
.+.+|.=...+|+.+..+|..+-++++|+.|++++| .++++........+|++|+++. +.++.+|..+..++.|+.|.
T Consensus 220 ~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLY 297 (1255)
T ss_pred hhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHH
Confidence 666655555566777777888888889999999997 5667767777788899999988 56778888888899999999
Q ss_pred eCcCCCC-CccccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCC
Q 039954 434 ILDCKRL-EALPKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADD 511 (578)
Q Consensus 434 l~~~~~~-~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 511 (578)
+.+|+.. ..+|.+++.+..|+.+...+ .++-+|+ ++..|..|+.|.+.. +.+.++|++.
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPE---------------glcRC~kL~kL~L~~--NrLiTLPeaI-- 358 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPE---------------GLCRCVKLQKLKLDH--NRLITLPEAI-- 358 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhccccccCch---------------hhhhhHHHHHhcccc--cceeechhhh--
Confidence 8887753 47888999999999888888 6666664 466788999998875 7888899877
Q ss_pred CCCCCCCCCCccccEEEeccCCCccccccccCCCCCcceEEecc
Q 039954 512 KGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQLYN 555 (578)
Q Consensus 512 ~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~ 555 (578)
..++.|+.||+.++|++.-=|+.-..-.+|+.-+|+.
T Consensus 359 -------HlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 359 -------HLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred -------hhcCCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence 6889999999999888864443222335666666553
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.8e-23 Score=234.39 Aligned_cols=347 Identities=23% Similarity=0.344 Sum_probs=242.2
Q ss_pred hhhcccCcccEEEecCCCC-------CccCCccccc-ccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHH
Q 039954 83 PKLLKLQRLRVFSLRGYRI-------PELPDSVGDL-RYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCAD 154 (578)
Q Consensus 83 ~~~~~l~~Lr~L~L~~~~i-------~~lp~~i~~l-~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~ 154 (578)
.+|.+|++|+.|.+..+.. ..+|..+..+ .+||.|++.++.++.+|..+ ...+|+.|++.++ .+..+|.+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccccccc
Confidence 3445888888888865432 2356666655 45888888888888888766 4678888888887 45667777
Q ss_pred HhccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCC
Q 039954 155 MGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGY 234 (578)
Q Consensus 155 l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 234 (578)
+..+++|+.|+++++...+.+|. ++.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~----------------------------------------------------- 655 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSM----------------------------------------------------- 655 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-ccc-----------------------------------------------------
Confidence 77788888888877654444432 222
Q ss_pred CCCCCCCCcCCCCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCC
Q 039954 235 GGTNFPAWLGDSSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQ 313 (578)
Q Consensus 235 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 313 (578)
+++|+.|++++|.....+| .++.+++|+.|++++|..++.++... .+++|+.|.+.+|.
T Consensus 656 -------------l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-------~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 656 -------------ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-------NLKSLYRLNLSGCS 715 (1153)
T ss_pred -------------CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-------CCCCCCEEeCCCCC
Confidence 4566666777666555555 66677777777777776665554321 25566666666654
Q ss_pred CccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCc
Q 039954 314 GWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLK 393 (578)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~ 393 (578)
.+..+. ....+|+.|+++++ .+. .+|.. + .+++|++|.+.++....
T Consensus 716 ~L~~~p--------~~~~nL~~L~L~~n-~i~-~lP~~-----------------------~-~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 716 RLKSFP--------DISTNISWLDLDET-AIE-EFPSN-----------------------L-RLENLDELILCEMKSEK 761 (1153)
T ss_pred Cccccc--------cccCCcCeeecCCC-ccc-ccccc-----------------------c-cccccccccccccchhh
Confidence 433221 11346666766665 343 33322 1 24456666665543211
Q ss_pred c-------cccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC--CcCC
Q 039954 394 T-------LPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG--ELPS 464 (578)
Q Consensus 394 ~-------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~--~l~~ 464 (578)
. .+.....+++|++|++++|+....+|..+..+++|+.|++++|..++.+|..+ ++++|++|++++ .+..
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 0 11222346799999999999999999999999999999999999999998876 799999999998 5555
Q ss_pred cccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccccCC
Q 039954 465 LEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSSIVD 544 (578)
Q Consensus 465 l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~ 544 (578)
++. ...+|+.|++++ +.++.+|... ..+++|++|++++|++++.+|..+..
T Consensus 841 ~p~------------------~~~nL~~L~Ls~--n~i~~iP~si---------~~l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 841 FPD------------------ISTNISDLNLSR--TGIEEVPWWI---------EKFSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred ccc------------------cccccCEeECCC--CCCccChHHH---------hcCCCCCEEECCCCCCcCccCccccc
Confidence 442 136799999988 6778888654 57789999999999999999988889
Q ss_pred CCCcceEEeccCCCCcccCCCCCCC
Q 039954 545 LQNLTILQLYNCPKLKYFPEKGLPS 569 (578)
Q Consensus 545 l~~L~~L~l~~c~~l~~l~~~~~~~ 569 (578)
+++|+.+++++|.+++.++..+.|.
T Consensus 892 L~~L~~L~l~~C~~L~~~~l~~~~~ 916 (1153)
T PLN03210 892 LKHLETVDFSDCGALTEASWNGSPS 916 (1153)
T ss_pred ccCCCeeecCCCcccccccCCCCch
Confidence 9999999999999999876554443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=8.6e-26 Score=215.86 Aligned_cols=391 Identities=18% Similarity=0.208 Sum_probs=259.1
Q ss_pred ccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCccccc-ccccCcCCc
Q 039954 59 QHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLP-ESVNKLYNL 137 (578)
Q Consensus 59 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L 137 (578)
++.++|.+ ++ |.+...-+..|-++++|+.+.+.+|.++.+|...+...+|+.|+|.+|.|+.+. +++.-++-|
T Consensus 78 ~~t~~Ldl---sn---Nkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 78 SQTQTLDL---SN---NKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred cceeeeec---cc---cccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 35566744 43 344444455555999999999999999999998888999999999999998885 678889999
Q ss_pred cEEecCCCchhHHhhH-HHhccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceee
Q 039954 138 HSLLLEDCWELEKLCA-DMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEI 216 (578)
Q Consensus 138 ~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~ 216 (578)
|+|||+.| .+.++|. .+..-.++++|++++|.+.+--...|..+.+|-.|.. .-
T Consensus 152 rslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL------------------------sr 206 (873)
T KOG4194|consen 152 RSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL------------------------SR 206 (873)
T ss_pred hhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec------------------------cc
Confidence 99999999 5555543 3666788999999999944433334777776666621 11
Q ss_pred ccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCC-CCCCCCCCCcceeeecCcCCceecCccccCC
Q 039954 217 SKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTA-LPSVGQLPSLTHLAVCGMSRVKRLGSEFYGN 295 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 295 (578)
+.+ ..+|.... ..+++|+.|++..|.+... ...+.++++|+.|.+..|..-.--.-.|++
T Consensus 207 Nri-----------------ttLp~r~F-k~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~- 267 (873)
T KOG4194|consen 207 NRI-----------------TTLPQRSF-KRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG- 267 (873)
T ss_pred Ccc-----------------cccCHHHh-hhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee-
Confidence 111 11221111 1278999999999998754 347889999999999887632222222332
Q ss_pred CCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhH-HHh
Q 039954 296 DAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESI-AER 374 (578)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i-~~~ 374 (578)
+.++++|++..+.-.. .... . +.++..|+.|++++| .+ +.| ++.
T Consensus 268 -----l~kme~l~L~~N~l~~-vn~g-~---lfgLt~L~~L~lS~N-aI------------------------~rih~d~ 312 (873)
T KOG4194|consen 268 -----LEKMEHLNLETNRLQA-VNEG-W---LFGLTSLEQLDLSYN-AI------------------------QRIHIDS 312 (873)
T ss_pred -----ecccceeecccchhhh-hhcc-c---ccccchhhhhccchh-hh------------------------heeecch
Confidence 4555555555432110 0000 0 234455555555554 33 222 224
Q ss_pred cCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCC-CCcCCCCccEEEeCcCCCCC---ccccccCCC
Q 039954 375 LDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPE-GGLPCAKLTRLTILDCKRLE---ALPKGLHNL 450 (578)
Q Consensus 375 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~---~~~~~~~~l 450 (578)
+.-+++|++|+++.|+..+--+..+..+.+|++|++++|. +..+.+ .+..+++|+.|+|++|...- +-...|.++
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 4556789999999985444336677788999999999854 444433 45568899999999887533 334567889
Q ss_pred CCccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEe
Q 039954 451 TSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMI 529 (578)
Q Consensus 451 ~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 529 (578)
++|+.|.+.| +++.++.. +|.+++.|++|++.+ +-+.+|..+.| ..+ .|++|.+
T Consensus 392 ~~LrkL~l~gNqlk~I~kr--------------Afsgl~~LE~LdL~~--NaiaSIq~nAF--------e~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKR--------------AFSGLEALEHLDLGD--NAIASIQPNAF--------EPM-ELKELVM 446 (873)
T ss_pred hhhhheeecCceeeecchh--------------hhccCcccceecCCC--Ccceeeccccc--------ccc-hhhhhhh
Confidence 9999999999 88887643 678899999999988 67777776654 233 6666666
Q ss_pred cc------CCCccccccccCCCCCcceEEeccCCCCccc
Q 039954 530 NN------FPNLERLSSSIVDLQNLTILQLYNCPKLKYF 562 (578)
Q Consensus 530 ~~------~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l 562 (578)
+. | .++.++.++.+ ..++.-....|-+=+.+
T Consensus 447 nSssflCDC-ql~Wl~qWl~~-~~lq~sv~a~CayPe~L 483 (873)
T KOG4194|consen 447 NSSSFLCDC-QLKWLAQWLYR-RKLQSSVIAKCAYPEPL 483 (873)
T ss_pred cccceEEec-cHHHHHHHHHh-cccccceeeeccCCccc
Confidence 54 3 34455544444 35666666667544433
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=2.2e-26 Score=221.54 Aligned_cols=367 Identities=19% Similarity=0.301 Sum_probs=267.6
Q ss_pred ccCcccEEEecCCCCC--ccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCccc
Q 039954 87 KLQRLRVFSLRGYRIP--ELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHL 164 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 164 (578)
-++..|=.|+++|.+. .+|+.+..++.++.|.|.++++..+|++++.|.+|++|.+++| .+..+...+..++.|+.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHH
Confidence 3566788899999884 6799999999999999999999999999999999999999998 556666778888889988
Q ss_pred ccCCCCcc-cccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCc
Q 039954 165 KNSNTKSL-EEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWL 243 (578)
Q Consensus 165 ~l~~~~~~-~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (578)
.+..|..- ..+|.+|-++.
T Consensus 84 ~~R~N~LKnsGiP~diF~l~------------------------------------------------------------ 103 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLK------------------------------------------------------------ 103 (1255)
T ss_pred hhhccccccCCCCchhcccc------------------------------------------------------------
Confidence 88887732 24555554444
Q ss_pred CCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCC
Q 039954 244 GDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGS 323 (578)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 323 (578)
.|+.|++++|++.+.+..+....++-.|++++|. ++.++...+-. +..|-.|+++++. ....
T Consensus 104 ------dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfin-----LtDLLfLDLS~Nr------Le~L 165 (1255)
T KOG0444|consen 104 ------DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFIN-----LTDLLFLDLSNNR------LEML 165 (1255)
T ss_pred ------cceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHh-----hHhHhhhccccch------hhhc
Confidence 4444555555554433344455555555554443 33333332211 3333344444332 1222
Q ss_pred CCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCC--chhhHHHhcCCCCCccEEEeecCCCCcccccCCCC
Q 039954 324 SQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCS--KLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHN 401 (578)
Q Consensus 324 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~--~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 401 (578)
+++...+..|++|++++|+ +...--..+++++.|.+...+.+ .+..+|.++.++.+|+.++++.| .+..+|..+..
T Consensus 166 PPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~ 243 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYK 243 (1255)
T ss_pred CHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhh
Confidence 3335667889999999985 33222233455555543333333 24468999999999999999997 68889999999
Q ss_pred CCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC---CcCCcccCCCCCCCccee
Q 039954 402 LGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG---ELPSLEEDGLPTNLHSMI 478 (578)
Q Consensus 402 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~---~l~~l~~~~~~~~l~~l~ 478 (578)
+++|+.|++++| .++.+..+...-.+|++|.++.|+ ++.+|..+..+++|+.|.+.+ .++.+|.
T Consensus 244 l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPS----------- 310 (1255)
T KOG0444|consen 244 LRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPS----------- 310 (1255)
T ss_pred hhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCcc-----------
Confidence 999999999995 455555555556789999999986 789999999999999999988 5566653
Q ss_pred eccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccccCCCCCcceEEeccCCC
Q 039954 479 ERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQLYNCPK 558 (578)
Q Consensus 479 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~ 558 (578)
+++.+.+|+.+...+ ++++-+|++. +.+..|+.|.|+. +.+-.+|.++.-++-|+.|++..+++
T Consensus 311 ----GIGKL~~Levf~aan--N~LElVPEgl---------cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 311 ----GIGKLIQLEVFHAAN--NKLELVPEGL---------CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred ----chhhhhhhHHHHhhc--cccccCchhh---------hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcC
Confidence 588899999998887 8899999876 7889999999998 68888999999999999999999888
Q ss_pred CcccC
Q 039954 559 LKYFP 563 (578)
Q Consensus 559 l~~l~ 563 (578)
+.--|
T Consensus 375 LVMPP 379 (1255)
T KOG0444|consen 375 LVMPP 379 (1255)
T ss_pred ccCCC
Confidence 86533
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1.4e-27 Score=218.10 Aligned_cols=416 Identities=22% Similarity=0.289 Sum_probs=229.8
Q ss_pred CcCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhc
Q 039954 78 APSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGN 157 (578)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~ 157 (578)
...+|+.+..+..|+.|+.++|.+.++|++|+.+..|+.++..+|.+..+|++++.+.+|..+++.+| ....+|...-+
T Consensus 103 ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~ 181 (565)
T KOG0472|consen 103 LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA 181 (565)
T ss_pred HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666 34444444444
Q ss_pred cccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeec--c--------ccCccccch
Q 039954 158 LAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEIS--K--------LENVKDVGN 227 (578)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~--~--------~~~~~~~~~ 227 (578)
|+.|++||...|- .+.+|++++.+.+|..|+....... .++++..+..+. .++.. . +.++..+..
T Consensus 182 m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~---~lPef~gcs~L~-Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 182 MKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIR---FLPEFPGCSLLK-ELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcccc---cCCCCCccHHHH-HHHhcccHHHhhHHHHhccccccee
Confidence 7777777776666 6667777777777666633222111 112222222221 11100 0 000000000
Q ss_pred hhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCee
Q 039954 228 AKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETL 307 (578)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 307 (578)
.......-.++|..+.. +.+|..||+++|.+.+..+.++.+ +|+.|.+.||+.-+ +......+.....++.|++-
T Consensus 257 -LDLRdNklke~Pde~cl--LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~ 331 (565)
T KOG0472|consen 257 -LDLRDNKLKEVPDEICL--LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSK 331 (565)
T ss_pred -eeccccccccCchHHHH--hhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHh
Confidence 00001122234444333 455666666666665544455666 66666666655221 11111111001111111110
Q ss_pred eec-cCCCcc---c--c-ccCCCCCccccCcccceeecccccccccCCCCC-CCCC--cceEEEEecCCchhhHHHhcCC
Q 039954 308 HFE-DMQGWE---D--W-IPHGSSQGVERFPKLRELHILRCSKLQGTFPEH-LPAL--EKLSLYVYGCSKLESIAERLDN 377 (578)
Q Consensus 308 ~l~-~~~~~~---~--~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l--~~L~l~~~~~~~l~~i~~~~~~ 377 (578)
... +...-. . . ......+....+.+.+.|++++- +++ .+|.. |..- +..+....+-+++.++|..+..
T Consensus 332 ~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~ 409 (565)
T KOG0472|consen 332 IKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE 409 (565)
T ss_pred hccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence 000 000000 0 0 00111111334557777777774 565 55532 1111 1123344455667778876655
Q ss_pred CCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEE
Q 039954 378 NTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELT 457 (578)
Q Consensus 378 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 457 (578)
+..+...-+..+..+.-+|..+..+++|..|++++ +.+..+|..++.+-.|+.|+++.|+ -..+|..+..+..++.+-
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtll 487 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLL 487 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHH
Confidence 55555544444456767777888889999999987 5677888888888889999998885 456777777777777777
Q ss_pred ecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCC
Q 039954 458 IGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFP 533 (578)
Q Consensus 458 l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 533 (578)
.++ ++..++.. ++.++.+|..||+.+ +.+..+|.+. ..+++|++|+++++|
T Consensus 488 as~nqi~~vd~~--------------~l~nm~nL~tLDL~n--Ndlq~IPp~L---------gnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 488 ASNNQIGSVDPS--------------GLKNMRNLTTLDLQN--NDLQQIPPIL---------GNMTNLRHLELDGNP 539 (565)
T ss_pred hccccccccChH--------------HhhhhhhcceeccCC--CchhhCChhh---------ccccceeEEEecCCc
Confidence 775 77776643 467788899999987 7888888876 688899999999954
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=4e-25 Score=222.38 Aligned_cols=109 Identities=28% Similarity=0.340 Sum_probs=85.7
Q ss_pred CccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccC
Q 039954 54 DLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNK 133 (578)
Q Consensus 54 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~ 133 (578)
...+.-+|.+| ++++ +.....|..+..+..|+.|.++.|.|...|.++.++.+|++|.|..|.+..+|.++..
T Consensus 40 ~~~~~v~L~~l---~lsn----n~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~ 112 (1081)
T KOG0618|consen 40 FVEKRVKLKSL---DLSN----NQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISE 112 (1081)
T ss_pred HhhheeeeEEe---eccc----cccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHh
Confidence 33444456777 4443 5567788888889999999999999988888888999999999999988899999999
Q ss_pred cCCccEEecCCCchhHHhhHHHhccccCcccccCCCC
Q 039954 134 LYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 134 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 170 (578)
+++|++||+++| .....|..+..++.+..+..++|.
T Consensus 113 lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 113 LKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNE 148 (1081)
T ss_pred hhcccccccchh-ccCCCchhHHhhhHHHHHhhhcch
Confidence 999999999988 445566667777777777777763
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.88 E-value=3.8e-23 Score=219.64 Aligned_cols=295 Identities=27% Similarity=0.325 Sum_probs=190.1
Q ss_pred CcchHHHHHHHhcc-----cceEEeccc---cccccccCCCCCeeEEEeeeCCCCccccccCccccccccEEeeeccCCC
Q 039954 1 MHDLISDLAQWAAE-----EIYFTMEYT---SEVNKQQSFSENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNS 72 (578)
Q Consensus 1 mHd~v~d~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~ 72 (578)
|||||||||.|+|+ ++.++.... .+ ......+..+|+++++.+.... ...-..+++|++|.+.+...
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~- 557 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSD- 557 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEECCcCccc-cccccchhheeEEEEeccchhh---ccCCCCCCccceEEEeecch-
Confidence 99999999999999 665444322 11 1223344678999999988754 34445667899998877431
Q ss_pred CCCCCCcCchhhhc-ccCcccEEEecCCC-CCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHH
Q 039954 73 EPGYLAPSILPKLL-KLQRLRVFSLRGYR-IPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEK 150 (578)
Q Consensus 73 ~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~ 150 (578)
....++..|| .++.||||||++|. +..+|+.|+++.+||||+++++.+.++|.++++|++|.+||+..+.....
T Consensus 558 ----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 558 ----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLES 633 (889)
T ss_pred ----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccc
Confidence 2466777777 89999999999876 78999999999999999999999999999999999999999999876666
Q ss_pred hhHHHhccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhh
Q 039954 151 LCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKE 230 (578)
Q Consensus 151 lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~ 230 (578)
+|.....|.+||+|.+.... ...-...++.+..|++|....+..........+..+..++
T Consensus 634 ~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~------------------- 693 (889)
T KOG4658|consen 634 IPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLR------------------- 693 (889)
T ss_pred ccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHH-------------------
Confidence 67777789999999987765 2221222444444444433333221111111121111111
Q ss_pred hcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCC-CCCCCCeeee
Q 039954 231 ARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPI-PFPCLETLHF 309 (578)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l 309 (578)
...+.+.+.++........+..+.+|+.|.+.+|...+......... ... .|+++.++.+
T Consensus 694 ------------------~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~-~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 694 ------------------SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESL-IVLLCFPNLSKVSI 754 (889)
T ss_pred ------------------HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccccccc-chhhhHHHHHHHHh
Confidence 11111222223333334466777888888888776543322111111 111 1556666666
Q ss_pred ccCCCccccccCCCCCccccCcccceeecccccccccCCC
Q 039954 310 EDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFP 349 (578)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 349 (578)
.+|....+... ....|+|+.|.+.+|..+...+|
T Consensus 755 ~~~~~~r~l~~------~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 755 LNCHMLRDLTW------LLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred hccccccccch------hhccCcccEEEEecccccccCCC
Confidence 66665544322 23467899999998876664444
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=5.1e-16 Score=162.04 Aligned_cols=257 Identities=23% Similarity=0.293 Sum_probs=148.3
Q ss_pred CcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCC
Q 039954 89 QRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSN 168 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~ 168 (578)
..-.+|+++++.++.+|..+. .+|+.|++.+|.++.+|.. .++|++|++++| .+..+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 456678999999988888775 4789999999988888853 578889999888 45566642 46788888888
Q ss_pred CCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCC
Q 039954 169 TKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSF 248 (578)
Q Consensus 169 ~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (578)
|. +..+|.... .|+.|.... +.+ ..+|.. .
T Consensus 272 N~-L~~Lp~lp~---~L~~L~Ls~------------------------N~L-----------------t~LP~~-----p 301 (788)
T PRK15387 272 NP-LTHLPALPS---GLCKLWIFG------------------------NQL-----------------TSLPVL-----P 301 (788)
T ss_pred Cc-hhhhhhchh---hcCEEECcC------------------------Ccc-----------------cccccc-----c
Confidence 87 555554222 122221000 000 001110 3
Q ss_pred CceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccc
Q 039954 249 SNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVE 328 (578)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 328 (578)
++|+.|++++|.+.+ ++. ...+|+.|.+.+|. ++.++.
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~--lp~~L~~L~Ls~N~-L~~LP~-------------------------------------- 339 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPA--LPSELCKLWAYNNQ-LTSLPT-------------------------------------- 339 (788)
T ss_pred cccceeECCCCcccc-CCC--CcccccccccccCc-cccccc--------------------------------------
Confidence 455666666655543 221 11234444444432 111110
Q ss_pred cCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceE
Q 039954 329 RFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEI 408 (578)
Q Consensus 329 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 408 (578)
..++|+.|++++| +++ .+|....+++.|.+. .+.+..+|.. ..+|+.|++++|. +..+|.. .++|+.|
T Consensus 340 lp~~Lq~LdLS~N-~Ls-~LP~lp~~L~~L~Ls---~N~L~~LP~l---~~~L~~LdLs~N~-Lt~LP~l---~s~L~~L 407 (788)
T PRK15387 340 LPSGLQELSVSDN-QLA-SLPTLPSELYKLWAY---NNRLTSLPAL---PSGLKELIVSGNR-LTSLPVL---PSELKEL 407 (788)
T ss_pred cccccceEecCCC-ccC-CCCCCCcccceehhh---ccccccCccc---ccccceEEecCCc-ccCCCCc---ccCCCEE
Confidence 0135666666665 555 455444444444332 2333344432 2367788888773 4456542 3578888
Q ss_pred EeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcC
Q 039954 409 RIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELP 463 (578)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~ 463 (578)
++++|. +..+|.. ..+|+.|++++|. ++.+|..+..+++|+.|++++ .+.
T Consensus 408 dLS~N~-LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 408 MVSGNR-LTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred EccCCc-CCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCC
Confidence 888865 4456642 2467778887776 456777777788888888877 443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=9.6e-18 Score=153.95 Aligned_cols=101 Identities=24% Similarity=0.323 Sum_probs=59.4
Q ss_pred ccEEEecCCCCCccC-CcccccccccEEeccCCCcccc-cccccCcCCccEEecCCCchhHHhhHH-HhccccCcccccC
Q 039954 91 LRVFSLRGYRIPELP-DSVGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCWELEKLCAD-MGNLAKLHHLKNS 167 (578)
Q Consensus 91 Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~ 167 (578)
-..++|..|.|+.+| .+|+.+++||.|||++|.|+.| |.++.+++.|-.|-+.+++.++.+|.. |+++..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 344566666666663 4566666666666666666666 456666666666666664455555543 5666666666666
Q ss_pred CCCcccccC-CCCCCcccccccCcce
Q 039954 168 NTKSLEEMP-VGIGRLTCLQTLCNFV 192 (578)
Q Consensus 168 ~~~~~~~lp-~~i~~l~~L~~L~~~~ 192 (578)
-|+ +..++ ..+..+++|..|+.+.
T Consensus 149 an~-i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 149 ANH-INCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred hhh-hcchhHHHHHHhhhcchhcccc
Confidence 665 33333 2355566665554443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=2.9e-15 Score=156.47 Aligned_cols=252 Identities=22% Similarity=0.222 Sum_probs=161.6
Q ss_pred cCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhcc
Q 039954 79 PSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNL 158 (578)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l 158 (578)
..+|..+. ++|+.|++.+|+++.+|.. +++|++|++++|.++.+|.. .++|+.|++++| .+..+|...
T Consensus 214 tsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~lp--- 281 (788)
T PRK15387 214 TTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN-PLTHLPALP--- 281 (788)
T ss_pred CcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC-chhhhhhch---
Confidence 46677665 4799999999999999863 58899999999999999864 468999999999 456666533
Q ss_pred ccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCC
Q 039954 159 AKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTN 238 (578)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (578)
.+|+.|++++|. +..+|... ++|+.|.... +.+. .
T Consensus 282 ~~L~~L~Ls~N~-Lt~LP~~p---~~L~~LdLS~------------------------N~L~-----------------~ 316 (788)
T PRK15387 282 SGLCKLWIFGNQ-LTSLPVLP---PGLQELSVSD------------------------NQLA-----------------S 316 (788)
T ss_pred hhcCEEECcCCc-cccccccc---cccceeECCC------------------------Cccc-----------------c
Confidence 578889999998 66777543 4455552111 0000 1
Q ss_pred CCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCcccc
Q 039954 239 FPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDW 318 (578)
Q Consensus 239 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 318 (578)
+|.. ..+|+.|++++|.+.. +|.+ ..+|+.|++++|. ++.++. ...+|+.|.+.++. +...
T Consensus 317 Lp~l-----p~~L~~L~Ls~N~L~~-LP~l--p~~Lq~LdLS~N~-Ls~LP~---------lp~~L~~L~Ls~N~-L~~L 377 (788)
T PRK15387 317 LPAL-----PSELCKLWAYNNQLTS-LPTL--PSGLQELSVSDNQ-LASLPT---------LPSELYKLWAYNNR-LTSL 377 (788)
T ss_pred CCCC-----cccccccccccCcccc-cccc--ccccceEecCCCc-cCCCCC---------CCcccceehhhccc-cccC
Confidence 1111 3467788888888864 3322 2579999998875 333321 13455666555432 1110
Q ss_pred ccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccC
Q 039954 319 IPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSG 398 (578)
Q Consensus 319 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~ 398 (578)
+ ...++|+.|++++| .+. .+|.. .++|+.|++++|. +..+|..
T Consensus 378 -P-------~l~~~L~~LdLs~N-~Lt-~LP~l--------------------------~s~L~~LdLS~N~-LssIP~l 420 (788)
T PRK15387 378 -P-------ALPSGLKELIVSGN-RLT-SLPVL--------------------------PSELKELMVSGNR-LTSLPML 420 (788)
T ss_pred -c-------ccccccceEEecCC-ccc-CCCCc--------------------------ccCCCEEEccCCc-CCCCCcc
Confidence 0 11235666666665 454 23321 1367788888874 5556642
Q ss_pred CCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCcccccc
Q 039954 399 LHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGL 447 (578)
Q Consensus 399 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 447 (578)
+.+|+.|++++|. ++.+|..+..+++|+.|++++|+.....+..+
T Consensus 421 ---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 ---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 3467778887754 45677777778888888888887665544433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=4.8e-14 Score=148.41 Aligned_cols=83 Identities=18% Similarity=0.363 Sum_probs=59.5
Q ss_pred CcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCC
Q 039954 89 QRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSN 168 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~ 168 (578)
.+..+|+++++.++.+|..+. .+|+.|++++|.++.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 456778888888888876653 478888888888888886654 47888888887 4556666543 4688888888
Q ss_pred CCcccccCCCC
Q 039954 169 TKSLEEMPVGI 179 (578)
Q Consensus 169 ~~~~~~lp~~i 179 (578)
|. +..+|..+
T Consensus 251 N~-L~~LP~~l 260 (754)
T PRK15370 251 NR-ITELPERL 260 (754)
T ss_pred Cc-cCcCChhH
Confidence 87 45666544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=6.9e-14 Score=147.22 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=39.8
Q ss_pred CccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCcccccc----CCCCCccE
Q 039954 380 SLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGL----HNLTSLQE 455 (578)
Q Consensus 380 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~ 455 (578)
+|+.|++++|. +..+|..+ .++|++|++++|. +..+|..+. ++|+.|++++|+. ..+|..+ ..++++..
T Consensus 347 sL~~L~Ls~N~-L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 347 ELQVLDVSKNQ-ITVLPETL--PPTITTLDVSRNA-LTNLPENLP--AALQIMQASRNNL-VRLPESLPHFRGEGPQPTR 419 (754)
T ss_pred cccEEECCCCC-CCcCChhh--cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCCc-ccCchhHHHHhhcCCCccE
Confidence 66677777663 44455433 3567777776654 334554332 3566666666653 3444332 33355566
Q ss_pred EEecC
Q 039954 456 LTIGG 460 (578)
Q Consensus 456 L~l~~ 460 (578)
+++.+
T Consensus 420 L~L~~ 424 (754)
T PRK15370 420 IIVEY 424 (754)
T ss_pred EEeeC
Confidence 66655
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=5.8e-16 Score=125.86 Aligned_cols=111 Identities=29% Similarity=0.386 Sum_probs=89.1
Q ss_pred CCcCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhH-HhhHHH
Q 039954 77 LAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELE-KLCADM 155 (578)
Q Consensus 77 ~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~l 155 (578)
....+|+.+..+.+|++|++.+|+|+++|..|+.+++||.|+++-|.+..+|.+++.++-|++||+.+|+... .+|..|
T Consensus 44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnf 123 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNF 123 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcch
Confidence 3566777888888888888888888888888888888888888888888888888888888888888775443 677778
Q ss_pred hccccCcccccCCCCcccccCCCCCCccccccc
Q 039954 156 GNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (578)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 188 (578)
-.|+.|+-|++++|. ...+|.+++++++|+.|
T Consensus 124 f~m~tlralyl~dnd-fe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 124 FYMTTLRALYLGDND-FEILPPDVGKLTNLQIL 155 (264)
T ss_pred hHHHHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence 888888888888887 77788888888888877
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.47 E-value=5.2e-14 Score=150.44 Aligned_cols=132 Identities=27% Similarity=0.294 Sum_probs=100.2
Q ss_pred cCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCC--CCccC-CcccccccccEEeccCCC-ccccc
Q 039954 53 GDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYR--IPELP-DSVGDLRYLRYLNLSGTE-IRTLP 128 (578)
Q Consensus 53 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--i~~lp-~~i~~l~~L~~L~L~~~~-i~~lp 128 (578)
+...+....|...+.+... ..++.+. ..+.|+.|-+..+. +..++ +.|..++.|++|||++|. +.++|
T Consensus 517 ~~~~~~~~~rr~s~~~~~~-------~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKI-------EHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccccchhheeEEEEeccch-------hhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 3444556667776655332 2222222 45579999998886 66664 447889999999999887 78999
Q ss_pred ccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccccCccee
Q 039954 129 ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVV 193 (578)
Q Consensus 129 ~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~ 193 (578)
..|+.|-+||+|+++++ .+..+|.+++++++|.+|++..+.....+|.....+.+|+.|..+..
T Consensus 589 ~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 99999999999999999 56799999999999999999998866666555666888888854443
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=1.8e-15 Score=139.16 Aligned_cols=365 Identities=20% Similarity=0.218 Sum_probs=209.2
Q ss_pred CCCcCchhhhc-ccCcccEEEecCCCCCcc-CCcccccccccEEeccC-CCccccc-ccccCcCCccEEecCCCchhHHh
Q 039954 76 YLAPSILPKLL-KLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSG-TEIRTLP-ESVNKLYNLHSLLLEDCWELEKL 151 (578)
Q Consensus 76 ~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~-~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l 151 (578)
+.+..+|+..| .++.||.|||++|+|+.+ |.+|.++..|-.|-+.+ |+|+++| ..+++|..|+.|.+.-|+..-..
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR 156 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence 44677887777 999999999999999998 89999999998888877 7799999 45799999999999988554555
Q ss_pred hHHHhccccCcccccCCCCcccccCC-CCCCcccccccCcceeecCCCCCccccccccccc----c--------ceeecc
Q 039954 152 CADMGNLAKLHHLKNSNTKSLEEMPV-GIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLR----G--------ALEISK 218 (578)
Q Consensus 152 p~~l~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~----~--------~l~~~~ 218 (578)
...++.+++|..|.+.+|. +..++. .+..+..++.+.........++.++++...-... + ++....
T Consensus 157 ~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred HHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence 6679999999999999998 777777 4888888888744333333344444433211110 0 000000
Q ss_pred ccCcc---------ccchhhhhcCCCCCCCCC-CcCCCCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCcee
Q 039954 219 LENVK---------DVGNAKEARGYGGTNFPA-WLGDSSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKR 287 (578)
Q Consensus 219 ~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~ 287 (578)
...++ .+........+.....|. .+. .+++|++|++++|.++..-. ++.++..+++|.+..|. ++.
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~--~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~ 312 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFK--KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEF 312 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHh--hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHH
Confidence 00000 000000111111111121 122 27788888888888876655 77888888888888775 444
Q ss_pred cCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeeccccc-----ccc------------cCCCC
Q 039954 288 LGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCS-----KLQ------------GTFPE 350 (578)
Q Consensus 288 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~l~------------~~~~~ 350 (578)
+....+.+ +..|+.|++.++..- ...+.. |.....|.+|.+-.|+ ++. +..|.
T Consensus 313 v~~~~f~~-----ls~L~tL~L~~N~it-~~~~~a----F~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C 382 (498)
T KOG4237|consen 313 VSSGMFQG-----LSGLKTLSLYDNQIT-TVAPGA----FQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC 382 (498)
T ss_pred HHHHhhhc-----cccceeeeecCCeeE-EEeccc----ccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC
Confidence 43333322 667777777765421 111111 4455566666665432 111 01110
Q ss_pred C-CCCCcceEEE-----EecCCchhh---HH--HhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCcccc
Q 039954 351 H-LPALEKLSLY-----VYGCSKLES---IA--ERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESF 419 (578)
Q Consensus 351 ~-l~~l~~L~l~-----~~~~~~l~~---i~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 419 (578)
. -..++.+.+. ...|..-++ .+ ..-..++.+..+.=..+..++.+|..+ ...-.++++.+| ..+.+
T Consensus 383 q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn-~~~~v 459 (498)
T KOG4237|consen 383 QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGN-AITSV 459 (498)
T ss_pred CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccc-hhccc
Confidence 0 0111111111 111110000 00 001122233322222223444444432 234567888874 44556
Q ss_pred CCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC
Q 039954 420 PEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG 460 (578)
Q Consensus 420 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 460 (578)
|.. .+.+| .+++++|+...--...|.+++.|.++-|+.
T Consensus 460 p~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 460 PDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred CHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence 654 45677 888988886554455677888888887763
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=4.3e-15 Score=120.85 Aligned_cols=161 Identities=24% Similarity=0.354 Sum_probs=127.4
Q ss_pred hhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCc
Q 039954 83 PKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLH 162 (578)
Q Consensus 83 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~ 162 (578)
+.++.+.++..|-+++|.++.+|..|+.+.+|++|++.+|+++++|..++.+++|+.|++.-| .+..+|.+|+.++.|+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 345678889999999999999999999999999999999999999999999999999999988 6788999999999999
Q ss_pred ccccCCCCccc-ccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCC
Q 039954 163 HLKNSNTKSLE-EMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPA 241 (578)
Q Consensus 163 ~L~l~~~~~~~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
.||+++|+... .+|..+-.++.|+.|+... ...+-+|.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~d-----------------------------------------ndfe~lp~ 144 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGD-----------------------------------------NDFEILPP 144 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcC-----------------------------------------CCcccCCh
Confidence 99999988443 4665565566565552111 11122455
Q ss_pred CcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceec
Q 039954 242 WLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRL 288 (578)
Q Consensus 242 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 288 (578)
.++. +++|+.|.+.+|.+.+....++.+..|++|.+++|. ++.+
T Consensus 145 dvg~--lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~vl 188 (264)
T KOG0617|consen 145 DVGK--LTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LTVL 188 (264)
T ss_pred hhhh--hcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-eeec
Confidence 5554 788888888888887544478888888888888875 3333
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=1.2e-13 Score=135.18 Aligned_cols=84 Identities=29% Similarity=0.280 Sum_probs=40.1
Q ss_pred ccCcccEEEecCCCCC-----ccCCcccccccccEEeccCCCccc-------ccccccCcCCccEEecCCCchhHHhhHH
Q 039954 87 KLQRLRVFSLRGYRIP-----ELPDSVGDLRYLRYLNLSGTEIRT-------LPESVNKLYNLHSLLLEDCWELEKLCAD 154 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~i~~-------lp~~~~~l~~L~~L~l~~~~~~~~lp~~ 154 (578)
.+..|++|+++++.++ .++..+...++|++|+++++.+.. ++..+..+++|+.|++++|......+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 5555666666666652 233344455556666665554431 1223344445555555554333233333
Q ss_pred Hhcccc---CcccccCCCC
Q 039954 155 MGNLAK---LHHLKNSNTK 170 (578)
Q Consensus 155 l~~l~~---L~~L~l~~~~ 170 (578)
+..+.+ |++|++++|.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 101 LESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHhccCcccEEEeeCCc
Confidence 333333 5555555444
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.24 E-value=1.6e-12 Score=127.21 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=45.5
Q ss_pred hhhhcccCcccEEEecCCCCCc-------cCCcccccccccEEeccCCCcc-cccccccCcCC---ccEEecCCCchhH-
Q 039954 82 LPKLLKLQRLRVFSLRGYRIPE-------LPDSVGDLRYLRYLNLSGTEIR-TLPESVNKLYN---LHSLLLEDCWELE- 149 (578)
Q Consensus 82 ~~~~~~l~~Lr~L~L~~~~i~~-------lp~~i~~l~~L~~L~L~~~~i~-~lp~~~~~l~~---L~~L~l~~~~~~~- 149 (578)
+..+...+.++.|+++++.+.. ++..+..+++|++|++++|.+. ..+..+..+.+ |++|++++|....
T Consensus 44 ~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~ 123 (319)
T cd00116 44 ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR 123 (319)
T ss_pred HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchH
Confidence 3334455556666666655441 1233445666666666666654 22333333333 6666666664331
Q ss_pred ---HhhHHHhcc-ccCcccccCCCC
Q 039954 150 ---KLCADMGNL-AKLHHLKNSNTK 170 (578)
Q Consensus 150 ---~lp~~l~~l-~~L~~L~l~~~~ 170 (578)
.+...+..+ ++|+.|++++|.
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCc
Confidence 222334445 566666666665
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.11 E-value=7.5e-13 Score=123.21 Aligned_cols=288 Identities=17% Similarity=0.207 Sum_probs=189.8
Q ss_pred ceeEEEeccCCCCCCCC---CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCc
Q 039954 250 NLVTLKFKNCDMCTALP---SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQG 326 (578)
Q Consensus 250 ~L~~L~l~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 326 (578)
.|+.|.+.++.-.++-+ ....+|+++.|.+.+|..+++...... ...+++++.+.+..|..+++......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl----a~~C~~l~~l~L~~c~~iT~~~Lk~l--- 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSL----ARYCRKLRHLNLHSCSSITDVSLKYL--- 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHH----HHhcchhhhhhhcccchhHHHHHHHH---
Confidence 57788888887665544 557899999999999987766433222 22388999999999888776554433
Q ss_pred cccCcccceeeccccccccc----CCCCCCCCCcceEEEEecCCchhh--HHHhcCCCCCccEEEeecCCCCcccc--cC
Q 039954 327 VERFPKLRELHILRCSKLQG----TFPEHLPALEKLSLYVYGCSKLES--IAERLDNNTSLETIRIFNCGNLKTLP--SG 398 (578)
Q Consensus 327 ~~~~~~L~~L~l~~~~~l~~----~~~~~l~~l~~L~l~~~~~~~l~~--i~~~~~~l~~L~~L~l~~~~~~~~~~--~~ 398 (578)
..++++|+++.++.|+.+.+ .+..+...++.+ ...+|..++. +-..-+.+..+.++++.+|..+++.. ..
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~--~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKL--SLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhh--hhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 56799999999999988875 222233333332 2235665543 44344566677777777887776642 11
Q ss_pred CCCCCCcceEEeccCCCccccC--CCCcCCCCccEEEeCcCCCCCccc--cccCCCCCccEEEecC-C-cCCcccCCCCC
Q 039954 399 LHNLGQLQEIRIQKCRNLESFP--EGGLPCAKLTRLTILDCKRLEALP--KGLHNLTSLQELTIGG-E-LPSLEEDGLPT 472 (578)
Q Consensus 399 ~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~-~-l~~l~~~~~~~ 472 (578)
-.++..|+.|..++|..++..+ .-...+++|+.+.+..|+..+..- ..-.+++.|+.+++.+ . +..-+-.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~---- 365 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA---- 365 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh----
Confidence 2357889999999988865432 233467899999999998765431 1226788899988887 2 1111111
Q ss_pred CCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccc-cccCCCCCcceE
Q 039954 473 NLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLS-SSIVDLQNLTIL 551 (578)
Q Consensus 473 ~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~l~~L~~L 551 (578)
....+++.|+.+.++. |..+++- ..... .........|..+.+++||.++.-. +.+..+++|+.+
T Consensus 366 ---------sls~~C~~lr~lslsh-ce~itD~---gi~~l-~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 366 ---------SLSRNCPRLRVLSLSH-CELITDE---GIRHL-SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred ---------hhccCCchhccCChhh-hhhhhhh---hhhhh-hhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 1235689999999998 4443322 11000 0111455789999999999988533 367788999999
Q ss_pred EeccCCCCcccCC
Q 039954 552 QLYNCPKLKYFPE 564 (578)
Q Consensus 552 ~l~~c~~l~~l~~ 564 (578)
++.+|..+.+=+.
T Consensus 432 ~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 432 ELIDCQDVTKEAI 444 (483)
T ss_pred eeechhhhhhhhh
Confidence 9999988875443
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=1.2e-10 Score=99.81 Aligned_cols=81 Identities=31% Similarity=0.473 Sum_probs=29.1
Q ss_pred ccCcccEEEecCCCCCccCCccc-ccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHH-hccccCccc
Q 039954 87 KLQRLRVFSLRGYRIPELPDSVG-DLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADM-GNLAKLHHL 164 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l-~~l~~L~~L 164 (578)
+...+|.|+|.++.|+.+ +.++ .+.+|+.|++++|.|+.++ .+..+++|++|++++| .+..+...+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 556789999999999887 3565 6889999999999999985 5888999999999999 455565445 468999999
Q ss_pred ccCCCC
Q 039954 165 KNSNTK 170 (578)
Q Consensus 165 ~l~~~~ 170 (578)
++++|.
T Consensus 94 ~L~~N~ 99 (175)
T PF14580_consen 94 YLSNNK 99 (175)
T ss_dssp E-TTS-
T ss_pred ECcCCc
Confidence 999998
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=2e-10 Score=111.47 Aligned_cols=107 Identities=26% Similarity=0.468 Sum_probs=72.1
Q ss_pred cCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhcc
Q 039954 79 PSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNL 158 (578)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l 158 (578)
..+|..+..|..|..+.+..|.+..+|..++.+..|.+|+|+.|++..+|..+..|+ |++|-+++| .++.+|..++.+
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~ 165 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLL 165 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccc
Confidence 556666666666777777777776677777777777777777777777766665554 666666666 556666667766
Q ss_pred ccCcccccCCCCcccccCCCCCCccccccc
Q 039954 159 AKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (578)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 188 (578)
..|.+||.+.|. +..+|..++.+.+|+.|
T Consensus 166 ~tl~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 166 PTLAHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 677777777776 56666666666666655
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.78 E-value=2e-10 Score=107.30 Aligned_cols=128 Identities=19% Similarity=0.322 Sum_probs=71.0
Q ss_pred cCcccceeeccccccccc----CCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCccc-----ccCC
Q 039954 329 RFPKLRELHILRCSKLQG----TFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTL-----PSGL 399 (578)
Q Consensus 329 ~~~~L~~L~l~~~~~l~~----~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~ 399 (578)
..++|+.+.+..|.+++. .+....+.|+.+.+...++..-..+-..-.+++.|+++.+++|..+++. ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 345555555555544332 1112233344433322222222233334457888888888888766654 3333
Q ss_pred CCCCCcceEEeccCCCcccc-CCCCcCCCCccEEEeCcCCCCCcc--ccccCCCCCccEE
Q 039954 400 HNLGQLQEIRIQKCRNLESF-PEGGLPCAKLTRLTILDCKRLEAL--PKGLHNLTSLQEL 456 (578)
Q Consensus 400 ~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L 456 (578)
.....|+.+.+.+|+.++.- -.....+++|+.+++.+|+..+.- ...-.++++++..
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 45677888888888877433 334556788888888888765522 2223455555544
No 29
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.75 E-value=6.2e-08 Score=93.38 Aligned_cols=90 Identities=29% Similarity=0.583 Sum_probs=63.6
Q ss_pred cCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCcc
Q 039954 375 LDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQ 454 (578)
Q Consensus 375 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 454 (578)
+..+.+++.|++++| .++.+|. -.++|++|.+++|..++.+|..+ .++|+.|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 455678999999998 6777772 34579999999999988888644 36899999999977776663 577
Q ss_pred EEEecC-CcCCcccCCCCCCCccee
Q 039954 455 ELTIGG-ELPSLEEDGLPTNLHSMI 478 (578)
Q Consensus 455 ~L~l~~-~l~~l~~~~~~~~l~~l~ 478 (578)
.|++.+ ....++ .+|.+|+.|.
T Consensus 116 ~L~L~~n~~~~L~--~LPssLk~L~ 138 (426)
T PRK15386 116 SLEIKGSATDSIK--NVPNGLTSLS 138 (426)
T ss_pred eEEeCCCCCcccc--cCcchHhhee
Confidence 777776 433332 3444444443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.74 E-value=3.4e-09 Score=90.86 Aligned_cols=103 Identities=28% Similarity=0.361 Sum_probs=42.0
Q ss_pred hhc-ccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccc-cCcCCccEEecCCCchhH--HhhHHHhccc
Q 039954 84 KLL-KLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCWELE--KLCADMGNLA 159 (578)
Q Consensus 84 ~~~-~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~--~lp~~l~~l~ 159 (578)
.+. .+..|++|++++|.|+.+ +.+..+++|++|++++|.|+.+++.+ ..+++|++|++++|.+.. ++ ..+..++
T Consensus 36 ~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~ 113 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNEL-EPLSSLP 113 (175)
T ss_dssp S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCC-GGGGG-T
T ss_pred chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHh-HHHHcCC
Confidence 444 566778888888887777 35677788888888888877776544 357788888888774322 22 3366777
Q ss_pred cCcccccCCCCcccccCC----CCCCcccccccC
Q 039954 160 KLHHLKNSNTKSLEEMPV----GIGRLTCLQTLC 189 (578)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~----~i~~l~~L~~L~ 189 (578)
+|+.|++.+|+.. ..+. .+..+++|+.|+
T Consensus 114 ~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 114 KLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp T--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEET
T ss_pred CcceeeccCCccc-chhhHHHHHHHHcChhheeC
Confidence 8888888887733 2222 155666666663
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.2e-09 Score=99.99 Aligned_cols=216 Identities=18% Similarity=0.163 Sum_probs=122.9
Q ss_pred CCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCC
Q 039954 300 PFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNT 379 (578)
Q Consensus 300 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~ 379 (578)
.+.+|++..+.+++-- ..... .....|++++.|+++.| -+ ..+..+-.....++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~---~~~k~~~~v~~LdLS~N-L~---------------------~nw~~v~~i~eqLp 172 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIE---EYSKILPNVRDLDLSRN-LF---------------------HNWFPVLKIAEQLP 172 (505)
T ss_pred hHHhhhheeecCcccc-ccchh---hhhhhCCcceeecchhh-hH---------------------HhHHHHHHHHHhcc
Confidence 3566666666655311 00000 11345666666666665 22 22333333445677
Q ss_pred CccEEEeecCCCCccccc-CCCCCCCcceEEeccCCCc-cccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEE
Q 039954 380 SLETIRIFNCGNLKTLPS-GLHNLGQLQEIRIQKCRNL-ESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELT 457 (578)
Q Consensus 380 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 457 (578)
+|+.|+|+.|+...-..+ .-..+++|+.|.++.|... ..+......+|+|+.|++..|..+..-......++.|++|+
T Consensus 173 ~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld 252 (505)
T KOG3207|consen 173 SLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELD 252 (505)
T ss_pred cchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcc
Confidence 888888888754332211 1125778888888888665 33333445678888888888754443334455677888888
Q ss_pred ecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCcc
Q 039954 458 IGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLE 536 (578)
Q Consensus 458 l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 536 (578)
|++ .+.+.+... ....++.|+.|+++.| .+.++.. .+.........+++|++|++.. +++.
T Consensus 253 Ls~N~li~~~~~~-------------~~~~l~~L~~Lnls~t--gi~si~~--~d~~s~~kt~~f~kL~~L~i~~-N~I~ 314 (505)
T KOG3207|consen 253 LSNNNLIDFDQGY-------------KVGTLPGLNQLNLSST--GIASIAE--PDVESLDKTHTFPKLEYLNISE-NNIR 314 (505)
T ss_pred ccCCccccccccc-------------ccccccchhhhhcccc--CcchhcC--CCccchhhhcccccceeeeccc-Cccc
Confidence 888 665555332 2455777777777773 2222221 0111222235678888888888 4565
Q ss_pred cccc--ccCCCCCcceEEeccCCCCc
Q 039954 537 RLSS--SIVDLQNLTILQLYNCPKLK 560 (578)
Q Consensus 537 ~i~~--~~~~l~~L~~L~l~~c~~l~ 560 (578)
.++. .+..+++|+.+.+.. +.+.
T Consensus 315 ~w~sl~~l~~l~nlk~l~~~~-n~ln 339 (505)
T KOG3207|consen 315 DWRSLNHLRTLENLKHLRITL-NYLN 339 (505)
T ss_pred cccccchhhccchhhhhhccc-cccc
Confidence 5543 555667777777654 5554
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=2.3e-08 Score=100.63 Aligned_cols=181 Identities=31% Similarity=0.426 Sum_probs=122.9
Q ss_pred hhhhcccCcccEEEecCCCCCccCCcccccc-cccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhcccc
Q 039954 82 LPKLLKLQRLRVFSLRGYRIPELPDSVGDLR-YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAK 160 (578)
Q Consensus 82 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 160 (578)
+..+..+..++.|++.++.++.+|.....+. +|++|++++|.+..+|..+..+++|+.|++++| .+..+|...+.+++
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~ 187 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSN 187 (394)
T ss_pred chhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhh
Confidence 3444566889999999999999988888885 999999999999999888999999999999999 67778887779999
Q ss_pred CcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCC
Q 039954 161 LHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFP 240 (578)
Q Consensus 161 L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (578)
|+.|++++|. +..+|..++....|+.+...... ....+..+..+..+. .+.+. ......++
T Consensus 188 L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~--~~~~~~~~~~~~~l~-~l~l~---------------~n~~~~~~ 248 (394)
T COG4886 188 LNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS--IIELLSSLSNLKNLS-GLELS---------------NNKLEDLP 248 (394)
T ss_pred hhheeccCCc-cccCchhhhhhhhhhhhhhcCCc--ceecchhhhhccccc-ccccC---------------Cceeeecc
Confidence 9999999999 78888877666667777322221 111112222222111 00000 00011112
Q ss_pred CCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCc
Q 039954 241 AWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRV 285 (578)
Q Consensus 241 ~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 285 (578)
..+.. +++++.|++++|.+.... .++.+.+++.|+++++...
T Consensus 249 ~~~~~--l~~l~~L~~s~n~i~~i~-~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 249 ESIGN--LSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred chhcc--ccccceeccccccccccc-cccccCccCEEeccCcccc
Confidence 33332 566777777777776433 3677777777777776543
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.66 E-value=2.4e-09 Score=97.98 Aligned_cols=88 Identities=22% Similarity=0.192 Sum_probs=62.6
Q ss_pred hhhcccCcccEEEecCCCCC-----ccCCcccccccccEEeccCC--C--ccccccc-------ccCcCCccEEecCCCc
Q 039954 83 PKLLKLQRLRVFSLRGYRIP-----ELPDSVGDLRYLRYLNLSGT--E--IRTLPES-------VNKLYNLHSLLLEDCW 146 (578)
Q Consensus 83 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~--~--i~~lp~~-------~~~l~~L~~L~l~~~~ 146 (578)
+..-.+..+..++|++|.+. .+...+.+.++|+.-++++- + ..++|+. +-+.++|++||||+|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 33447788999999999984 24456677889999988753 2 2355543 4467799999999985
Q ss_pred hhH----HhhHHHhccccCcccccCCCC
Q 039954 147 ELE----KLCADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 147 ~~~----~lp~~l~~l~~L~~L~l~~~~ 170 (578)
+-. .+-.-+..+.+|++|++.+|.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 433 233345678899999999988
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=3.8e-08 Score=69.09 Aligned_cols=58 Identities=29% Similarity=0.489 Sum_probs=50.2
Q ss_pred CcccEEEecCCCCCccC-CcccccccccEEeccCCCccccc-ccccCcCCccEEecCCCc
Q 039954 89 QRLRVFSLRGYRIPELP-DSVGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCW 146 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~ 146 (578)
++|++|++++|.++.+| ..|..+++|++|++++|.++.+| ..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999999999885 57889999999999999998887 467899999999999884
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=7.6e-10 Score=107.48 Aligned_cols=99 Identities=33% Similarity=0.384 Sum_probs=84.0
Q ss_pred ccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCccccc
Q 039954 87 KLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKN 166 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 166 (578)
.+..-...|++.|++.++|..++.+..|+.+.+.+|.+..+|..+.++..|.+||++.| .+..+|..++.|+ |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 44455667899999999999999999999999999999999999999999999999998 6778888888776 899999
Q ss_pred CCCCcccccCCCCCCccccccc
Q 039954 167 SNTKSLEEMPVGIGRLTCLQTL 188 (578)
Q Consensus 167 ~~~~~~~~lp~~i~~l~~L~~L 188 (578)
++|+ .+.+|++++.+..|..|
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHL 171 (722)
T ss_pred ecCc-cccCCcccccchhHHHh
Confidence 9988 88888888765555544
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=9.1e-09 Score=92.16 Aligned_cols=129 Identities=25% Similarity=0.286 Sum_probs=78.9
Q ss_pred ccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccc
Q 039954 108 VGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQT 187 (578)
Q Consensus 108 i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 187 (578)
+..++.|+.+||++|.|+.+.+++.-+++++.|++++|.+ ..+ ..++.+++|++||+++|. ...+..+-.++.+.++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i-~~v-~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI-RTV-QNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccce-eee-hhhhhcccceEeecccch-hHhhhhhHhhhcCEee
Confidence 4456677777777777777777777777777777777733 333 237777778888887776 4444333333444444
Q ss_pred cCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCC--C
Q 039954 188 LCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTA--L 265 (578)
Q Consensus 188 L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~ 265 (578)
|. .....+..|+.+.. +-+|..|++++|++... .
T Consensus 357 L~------La~N~iE~LSGL~K--------------------------------------LYSLvnLDl~~N~Ie~ldeV 392 (490)
T KOG1259|consen 357 LK------LAQNKIETLSGLRK--------------------------------------LYSLVNLDLSSNQIEELDEV 392 (490)
T ss_pred ee------hhhhhHhhhhhhHh--------------------------------------hhhheeccccccchhhHHHh
Confidence 41 11112222222222 34677778888877542 3
Q ss_pred CCCCCCCCcceeeecCcC
Q 039954 266 PSVGQLPSLTHLAVCGMS 283 (578)
Q Consensus 266 ~~l~~l~~L~~L~l~~~~ 283 (578)
..++.+|-|+.+.+.+|+
T Consensus 393 ~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cccccccHHHHHhhcCCC
Confidence 377888888888888776
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.4e-08 Score=95.87 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=24.1
Q ss_pred CCceeEEEeccCCCC--CCCCCCCCCCCcceeeecCcC
Q 039954 248 FSNLVTLKFKNCDMC--TALPSVGQLPSLTHLAVCGMS 283 (578)
Q Consensus 248 ~~~L~~L~l~~~~~~--~~~~~l~~l~~L~~L~l~~~~ 283 (578)
+++|+.|++..|++. ..+..+..+++|+.|.+..+.
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 778888888888874 233355566677777665554
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.54 E-value=8.1e-08 Score=96.70 Aligned_cols=84 Identities=27% Similarity=0.349 Sum_probs=66.6
Q ss_pred EEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcC-CccEEecCCCchhHHhhHHHhccccCcccccCCCCc
Q 039954 93 VFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLY-NLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKS 171 (578)
Q Consensus 93 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 171 (578)
.+++..+.+..-+..+..+..++.|++.++.+..+|.....+. +|+.|++++| .+..+|..++.+++|+.|+++.|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~- 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND- 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-
Confidence 5777777764444556677889999999999999988888885 9999999998 567777778999999999999988
Q ss_pred ccccCCC
Q 039954 172 LEEMPVG 178 (578)
Q Consensus 172 ~~~lp~~ 178 (578)
+..+|..
T Consensus 175 l~~l~~~ 181 (394)
T COG4886 175 LSDLPKL 181 (394)
T ss_pred hhhhhhh
Confidence 5555543
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.44 E-value=1.1e-06 Score=84.91 Aligned_cols=151 Identities=24% Similarity=0.388 Sum_probs=94.1
Q ss_pred CCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC--CcCCcccCCCCCCCccee
Q 039954 401 NLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG--ELPSLEEDGLPTNLHSMI 478 (578)
Q Consensus 401 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~--~l~~l~~~~~~~~l~~l~ 478 (578)
.+.++++|++++| .++.+|. -.++|+.|.+++|..++.+|..+ .++|++|++++ .+.. +|.+|+.+.
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-----LP~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-----LPESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-----cccccceEE
Confidence 3688999999998 6777773 23579999999999988888765 36899999998 4443 455666666
Q ss_pred ecccc---ccCCC-cccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccccCCCCCcceEEec
Q 039954 479 ERGRG---FHRFS-SLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQLY 554 (578)
Q Consensus 479 ~~~~~---~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~ 554 (578)
+.... +..+| +|+.|.+.+ .+........ ...|++|++|++++|..+ .+|..++ .+|+.|.++
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~-~n~~~~~~lp---------~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINS-YNPENQARID---------NLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eCCCCCcccccCcchHhheeccc-cccccccccc---------cccCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 54322 34443 466666654 1111111000 136678888888887654 3443333 478888887
Q ss_pred cCCCC-cccCCCCCCCcccceEe
Q 039954 555 NCPKL-KYFPEKGLPSSLLELDI 576 (578)
Q Consensus 555 ~c~~l-~~l~~~~~~~sL~~l~l 576 (578)
.+... .+++...+|+++ .|++
T Consensus 186 ~n~~~sLeI~~~sLP~nl-~L~f 207 (426)
T PRK15386 186 IEQKTTWNISFEGFPDGL-DIDL 207 (426)
T ss_pred ccccccccCccccccccc-Eech
Confidence 63211 134555566666 4443
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=6.6e-08 Score=86.76 Aligned_cols=104 Identities=31% Similarity=0.407 Sum_probs=56.4
Q ss_pred chhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhcccc
Q 039954 81 ILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAK 160 (578)
Q Consensus 81 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~ 160 (578)
+-.++.-.+.+|+|++++|.|..+. .+..+.+|..|||++|.+..+...-.+|-+.++|.+++| .+..+ ++++.+.+
T Consensus 299 iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~L-SGL~KLYS 375 (490)
T KOG1259|consen 299 IDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETL-SGLRKLYS 375 (490)
T ss_pred hhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhh-hhhHhhhh
Confidence 3333444455555555555554442 244555555555555555444433344555555555555 33333 34667777
Q ss_pred CcccccCCCCcccccC--CCCCCccccccc
Q 039954 161 LHHLKNSNTKSLEEMP--VGIGRLTCLQTL 188 (578)
Q Consensus 161 L~~L~l~~~~~~~~lp--~~i~~l~~L~~L 188 (578)
|..||+++|+ +..+. ..|++++.|+++
T Consensus 376 LvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 376 LVNLDLSSNQ-IEELDEVNHIGNLPCLETL 404 (490)
T ss_pred heeccccccc-hhhHHHhcccccccHHHHH
Confidence 7777887777 44332 347777777766
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=2.5e-07 Score=97.67 Aligned_cols=92 Identities=24% Similarity=0.354 Sum_probs=80.5
Q ss_pred cccEEEecCCCCC-ccCCcccccccccEEeccCCCcc-cccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccC
Q 039954 90 RLRVFSLRGYRIP-ELPDSVGDLRYLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNS 167 (578)
Q Consensus 90 ~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~ 167 (578)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|++|++++|.....+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999885 66888999999999999999975 788889999999999999997777899999999999999999
Q ss_pred CCCcccccCCCCCC
Q 039954 168 NTKSLEEMPVGIGR 181 (578)
Q Consensus 168 ~~~~~~~lp~~i~~ 181 (578)
+|.+.+.+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99977788877654
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=1.2e-07 Score=66.55 Aligned_cols=59 Identities=29% Similarity=0.318 Sum_probs=51.1
Q ss_pred ccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCC
Q 039954 112 RYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 112 ~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 170 (578)
++|++|++++|.++.+| ..+.++++|++|++++|.....-|..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47999999999999998 567899999999999996544444578999999999999987
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=6e-07 Score=94.81 Aligned_cols=98 Identities=26% Similarity=0.332 Sum_probs=85.9
Q ss_pred CCCCcCchhhhcccCcccEEEecCCCCC-ccCCcccccccccEEeccCCCcc-cccccccCcCCccEEecCCCchhHHhh
Q 039954 75 GYLAPSILPKLLKLQRLRVFSLRGYRIP-ELPDSVGDLRYLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCWELEKLC 152 (578)
Q Consensus 75 ~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp 152 (578)
+.+...+|..+.++++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++++++|++|++++|.....+|
T Consensus 428 n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 428 QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence 4567788999999999999999999996 77999999999999999999986 789999999999999999998878999
Q ss_pred HHHhcc-ccCcccccCCCCcc
Q 039954 153 ADMGNL-AKLHHLKNSNTKSL 172 (578)
Q Consensus 153 ~~l~~l-~~L~~L~l~~~~~~ 172 (578)
..++.+ .++..+++.+|...
T Consensus 508 ~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 508 AALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred hHHhhccccCceEEecCCccc
Confidence 988764 56778888887633
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2e-08 Score=90.00 Aligned_cols=58 Identities=24% Similarity=0.224 Sum_probs=32.3
Q ss_pred cccEEeccCCCcc--cccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCC
Q 039954 113 YLRYLNLSGTEIR--TLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 113 ~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 170 (578)
.|++|||+...|+ .+-..+..+.+|+-|.+.++..-+.+...++.-.+|+.|+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence 3666666665543 333344555666666666654444555555556666666666554
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=8.4e-07 Score=56.76 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=27.5
Q ss_pred CcccEEEecCCCCCccCCcccccccccEEeccCCCccccc
Q 039954 89 QRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLP 128 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp 128 (578)
++|++|++++|.|+.+|..++++++|++|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777666777777777777777776664
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.26 E-value=5.2e-08 Score=89.47 Aligned_cols=192 Identities=19% Similarity=0.195 Sum_probs=101.8
Q ss_pred CCceeEEEeccCCCCCCCC-----CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCC
Q 039954 248 FSNLVTLKFKNCDMCTALP-----SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHG 322 (578)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 322 (578)
+++|+.+++++|.+....+ -+..+..|++|.+.+|..-..-+.. .+ ..|..|....
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~-l~-------~al~~l~~~k----------- 151 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR-LG-------RALFELAVNK----------- 151 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH-HH-------HHHHHHHHHh-----------
Confidence 6688888999888765433 3556888888888877522211111 00 0011111000
Q ss_pred CCCccccCcccceeecccccccccC-------CCCCCCCCcceEEEEecCC--chhhHHHhcCCCCCccEEEeecCCCCc
Q 039954 323 SSQGVERFPKLRELHILRCSKLQGT-------FPEHLPALEKLSLYVYGCS--KLESIAERLDNNTSLETIRIFNCGNLK 393 (578)
Q Consensus 323 ~~~~~~~~~~L~~L~l~~~~~l~~~-------~~~~l~~l~~L~l~~~~~~--~l~~i~~~~~~l~~L~~L~l~~~~~~~ 393 (578)
-..+-+.|+.+...+| ++... .....+.++.+++...+.. ..+-+...+..+++|++|+|.+|....
T Consensus 152 ---k~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 152 ---KAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred ---ccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 0233455565555554 33310 0011233333332222211 122344567778888888888875443
Q ss_pred cc----ccCCCCCCCcceEEeccCCCccccCC-----CCcCCCCccEEEeCcCCCCC----ccccccCCCCCccEEEecC
Q 039954 394 TL----PSGLHNLGQLQEIRIQKCRNLESFPE-----GGLPCAKLTRLTILDCKRLE----ALPKGLHNLTSLQELTIGG 460 (578)
Q Consensus 394 ~~----~~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~ 460 (578)
.. ...+..+++|++|++++|..-..-.. .-...|+|+++.+.+|.... .+...+...+.|+.|+|++
T Consensus 228 egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 228 EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 32 44556677888888888765432111 11226788888888876433 2233445567777777777
Q ss_pred -Cc
Q 039954 461 -EL 462 (578)
Q Consensus 461 -~l 462 (578)
++
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 44
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=4.8e-06 Score=53.28 Aligned_cols=35 Identities=34% Similarity=0.456 Sum_probs=27.7
Q ss_pred ccccEEeccCCCcccccccccCcCCccEEecCCCc
Q 039954 112 RYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCW 146 (578)
Q Consensus 112 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~ 146 (578)
++|++|++++|.|+++|..+++|++|++|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 47888888888888888778888888888888884
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=2.6e-06 Score=85.99 Aligned_cols=103 Identities=24% Similarity=0.345 Sum_probs=70.3
Q ss_pred hhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccC
Q 039954 82 LPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKL 161 (578)
Q Consensus 82 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 161 (578)
...+..++.|.+|++..|.|..+...+..+++|++|++++|.|+.+. .+..+..|+.|++++| .+..+ ..+..+++|
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L 164 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDI-SGLESLKSL 164 (414)
T ss_pred hcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhc-cCCccchhh
Confidence 33456778888888888888777554777888888888888888773 4667777888888888 33443 235667888
Q ss_pred cccccCCCCcccccCCC-CCCccccccc
Q 039954 162 HHLKNSNTKSLEEMPVG-IGRLTCLQTL 188 (578)
Q Consensus 162 ~~L~l~~~~~~~~lp~~-i~~l~~L~~L 188 (578)
+.+++++|. +..+... ...+.+++.+
T Consensus 165 ~~l~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 165 KLLDLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred hcccCCcch-hhhhhhhhhhhccchHHH
Confidence 888888887 4444332 3455555544
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=1.1e-06 Score=92.38 Aligned_cols=93 Identities=27% Similarity=0.327 Sum_probs=53.7
Q ss_pred CCcCchhhhc-ccCcccEEEecCCCCC--ccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhH-Hhh
Q 039954 77 LAPSILPKLL-KLQRLRVFSLRGYRIP--ELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELE-KLC 152 (578)
Q Consensus 77 ~~~~~~~~~~-~l~~Lr~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~-~lp 152 (578)
.....|..++ .+|.||.|.+++-.+. ++-....++++|+.||+++++++.+ .+++.|++||+|.+++=.... .--
T Consensus 135 ~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l 213 (699)
T KOG3665|consen 135 FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDL 213 (699)
T ss_pred hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhH
Confidence 3455555666 6677777776665542 2223335666677777777766666 556667777766666532221 112
Q ss_pred HHHhccccCcccccCCCC
Q 039954 153 ADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 153 ~~l~~l~~L~~L~l~~~~ 170 (578)
..+-+|++|++||+|...
T Consensus 214 ~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHHhcccCCCeeeccccc
Confidence 345566677777766654
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=7.8e-06 Score=86.19 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=93.1
Q ss_pred CCeeEEEeeeCCCCc-cccccCccccccccEEeeeccCCCCCCCCCcCchhhhc-ccCcccEEEecCCCCCccCCccccc
Q 039954 34 ENLRHLSYIRGDYDG-VQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLL-KLQRLRVFSLRGYRIPELPDSVGDL 111 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~l 111 (578)
.+++++.+.+...-. .+.-.-..-+|.||+|.+.+... ...-...++ ++++|+.||+++++++.+ ..++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~------~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF------DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee------cchhHHHHhhccCccceeecCCCCccCc-HHHhcc
Confidence 345666664422111 11112334789999998876544 223345566 999999999999999988 789999
Q ss_pred ccccEEeccCCCccccc--ccccCcCCccEEecCCCchhH------HhhHHHhccccCcccccCCCCccccc
Q 039954 112 RYLRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCWELE------KLCADMGNLAKLHHLKNSNTKSLEEM 175 (578)
Q Consensus 112 ~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~------~lp~~l~~l~~L~~L~l~~~~~~~~l 175 (578)
++|++|.+.+=.+..-. ..+..|++|++||+|...... ..-+--..+++||.||.+++.....+
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 99999999987765432 568899999999999753221 11122245899999999998744443
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.89 E-value=5.9e-07 Score=90.38 Aligned_cols=93 Identities=26% Similarity=0.289 Sum_probs=67.7
Q ss_pred hhhhcccCcccEEEecCCCCCccC----------Cccc----------------------ccccccEEeccCCCcccccc
Q 039954 82 LPKLLKLQRLRVFSLRGYRIPELP----------DSVG----------------------DLRYLRYLNLSGTEIRTLPE 129 (578)
Q Consensus 82 ~~~~~~l~~Lr~L~L~~~~i~~lp----------~~i~----------------------~l~~L~~L~L~~~~i~~lp~ 129 (578)
|-+++.++.||+|.+.++.+...- .-|+ ..-.|.+.+.++|.+..+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 667889999999999998764310 0010 12356666777777777777
Q ss_pred cccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCC
Q 039954 130 SVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPV 177 (578)
Q Consensus 130 ~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~ 177 (578)
++.-++.|+.|||++|.. ... +.+..+++|++||++.|. .+.+|.
T Consensus 182 SLqll~ale~LnLshNk~-~~v-~~Lr~l~~LkhLDlsyN~-L~~vp~ 226 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKF-TKV-DNLRRLPKLKHLDLSYNC-LRHVPQ 226 (1096)
T ss_pred HHHHHHHhhhhccchhhh-hhh-HHHHhcccccccccccch-hccccc
Confidence 777888999999999954 433 368899999999999998 666664
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=5.8e-07 Score=80.82 Aligned_cols=161 Identities=14% Similarity=0.184 Sum_probs=87.7
Q ss_pred cCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCC--CCcCCCCccEEEeCcCCCCCcccccc--CCC
Q 039954 375 LDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPE--GGLPCAKLTRLTILDCKRLEALPKGL--HNL 450 (578)
Q Consensus 375 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l 450 (578)
+..|.+|+.|.|.+++....+...+..-.+|+.|+++.|...+.... .+.+|+.|..|.++.|...+.....+ +--
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 34455677777777665555555556666777777777666544321 23456677777777776444221111 112
Q ss_pred CCccEEEecCCcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEec
Q 039954 451 TSLQELTIGGELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMIN 530 (578)
Q Consensus 451 ~~L~~L~l~~~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 530 (578)
++|+.|+|+|.-..+....+ ..-...+++|..||+++ |+.+.. +. ...+..++.|++|.++
T Consensus 286 e~l~~LNlsG~rrnl~~sh~----------~tL~~rcp~l~~LDLSD-~v~l~~---~~-----~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHL----------STLVRRCPNLVHLDLSD-SVMLKN---DC-----FQEFFKFNYLQHLSLS 346 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHH----------HHHHHhCCceeeecccc-ccccCc---hH-----HHHHHhcchheeeehh
Confidence 56777777761111100000 00134577777888877 444443 11 0112455677788887
Q ss_pred cCCCcccccc---ccCCCCCcceEEeccC
Q 039954 531 NFPNLERLSS---SIVDLQNLTILQLYNC 556 (578)
Q Consensus 531 ~~~~l~~i~~---~~~~l~~L~~L~l~~c 556 (578)
+|=.+. |. .+...|+|.+|++.+|
T Consensus 347 RCY~i~--p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYDII--PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcCCC--hHHeeeeccCcceEEEEeccc
Confidence 774432 22 4556677777777776
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=4.9e-06 Score=83.98 Aligned_cols=87 Identities=23% Similarity=0.328 Sum_probs=55.1
Q ss_pred cCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccc-cCCCCCc
Q 039954 375 LDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKG-LHNLTSL 453 (578)
Q Consensus 375 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L 453 (578)
+.++++|++|++++|. ++.+ .++..++.|+.|++.+|... .+. .+..+++|+.+++++|... .+... ...+.++
T Consensus 114 l~~~~~L~~L~ls~N~-I~~i-~~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l 188 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNK-ITKL-EGLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIV-DIENDELSELISL 188 (414)
T ss_pred hhhhhcchheeccccc-cccc-cchhhccchhhheeccCcch-hcc-CCccchhhhcccCCcchhh-hhhhhhhhhccch
Confidence 4566788888888874 4444 35556777888888886543 332 2233678888888887643 33221 4677788
Q ss_pred cEEEecC-CcCCcc
Q 039954 454 QELTIGG-ELPSLE 466 (578)
Q Consensus 454 ~~L~l~~-~l~~l~ 466 (578)
+++.+.+ .+..+.
T Consensus 189 ~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 189 EELDLGGNSIREIE 202 (414)
T ss_pred HHHhccCCchhccc
Confidence 8888877 444443
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=1.4e-05 Score=72.20 Aligned_cols=87 Identities=22% Similarity=0.234 Sum_probs=62.4
Q ss_pred hhc-ccCcccEEEecCCCCCc---cCCcccccccccEEeccCCCcccccccc-cCcCCccEEecCCCchhH-HhhHHHhc
Q 039954 84 KLL-KLQRLRVFSLRGYRIPE---LPDSVGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCWELE-KLCADMGN 157 (578)
Q Consensus 84 ~~~-~l~~Lr~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~-~lp~~l~~ 157 (578)
.|. ....++.|||.+|.|.. +...+..++.|++|+++.|.+..--... ..+.+|++|-+.++.... ..-..+..
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 344 78889999999998853 3334568999999999998754221222 357789999998875433 34445678
Q ss_pred cccCcccccCCCC
Q 039954 158 LAKLHHLKNSNTK 170 (578)
Q Consensus 158 l~~L~~L~l~~~~ 170 (578)
++.++.|+++.|.
T Consensus 145 lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 145 LPKVTELHMSDNS 157 (418)
T ss_pred chhhhhhhhccch
Confidence 8888999888885
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.51 E-value=1.5e-05 Score=63.47 Aligned_cols=83 Identities=25% Similarity=0.264 Sum_probs=41.9
Q ss_pred ccCcccEEEecCCCCCccCCccc-ccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccc
Q 039954 87 KLQRLRVFSLRGYRIPELPDSVG-DLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLK 165 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 165 (578)
+...|...+|++|.+..+|..|. +.+-+++|++++|.+.++|.++..++.|+.|+++.| .+...|..+..+.+|-.|+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhc
Confidence 33444445555555555544442 333555555555555555555555555555555555 2333444444455555555
Q ss_pred cCCCC
Q 039954 166 NSNTK 170 (578)
Q Consensus 166 l~~~~ 170 (578)
..++.
T Consensus 130 s~~na 134 (177)
T KOG4579|consen 130 SPENA 134 (177)
T ss_pred CCCCc
Confidence 55544
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.45 E-value=2.3e-05 Score=62.36 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=56.3
Q ss_pred CCcCchhhhc-ccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHH
Q 039954 77 LAPSILPKLL-KLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCAD 154 (578)
Q Consensus 77 ~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~ 154 (578)
...+.|+.|. +++..+.|++.+|.|.++|..+..++.||.|+++.|.+...|.-+..|.+|-+||...+ ...++|..
T Consensus 64 ~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 64 GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 3466677776 77778888888888877777777888888888888877777777777777777777776 34445544
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.36 E-value=0.00023 Score=60.85 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=28.7
Q ss_pred cccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCC
Q 039954 113 YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 113 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 170 (578)
+...+||++|.+..++ .+..++.|.+|.+.+|.+...-|.--..+++|+.|.+++|.
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 4555666666655553 34555566666666553322222222334455555555554
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.35 E-value=3.5e-05 Score=78.06 Aligned_cols=85 Identities=25% Similarity=0.256 Sum_probs=67.3
Q ss_pred hhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCccccccc-ccCcCCccEEecCCCchhHHhhHHHhccccC
Q 039954 83 PKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCWELEKLCADMGNLAKL 161 (578)
Q Consensus 83 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 161 (578)
.++.-++.|+.|+|++|+++... .+..+.+|+.|||++|.++.+|.. ...++ |+.|.+++| .++.+ .++.++.+|
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~LksL 256 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIENLKSL 256 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhh-hhHHhhhhh
Confidence 34446788999999999988774 788899999999999999888853 34455 999999998 45555 458899999
Q ss_pred cccccCCCCc
Q 039954 162 HHLKNSNTKS 171 (578)
Q Consensus 162 ~~L~l~~~~~ 171 (578)
+.||+++|-+
T Consensus 257 ~~LDlsyNll 266 (1096)
T KOG1859|consen 257 YGLDLSYNLL 266 (1096)
T ss_pred hccchhHhhh
Confidence 9999998873
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.34 E-value=1.1e-05 Score=83.92 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=37.4
Q ss_pred HHHhcCCCCCccEEEeecCCCCcc--cccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCC---cccc
Q 039954 371 IAERLDNNTSLETIRIFNCGNLKT--LPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLE---ALPK 445 (578)
Q Consensus 371 i~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~ 445 (578)
+......+++|++|++++|..+.+ +......+++|+.|.+..+.. ++.++.+.+..+.... ....
T Consensus 287 l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~ 356 (482)
T KOG1947|consen 287 LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAEL 356 (482)
T ss_pred HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHH
Confidence 333445666777777777766533 111222355555544433221 3444444444433221 1112
Q ss_pred ccCCCCCccEEEecC
Q 039954 446 GLHNLTSLQELTIGG 460 (578)
Q Consensus 446 ~~~~l~~L~~L~l~~ 460 (578)
...++++++.+.+..
T Consensus 357 ~~~~~~~l~~~~l~~ 371 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSY 371 (482)
T ss_pred HHhcCCCcchhhhhh
Confidence 335555565555554
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.33 E-value=0.00024 Score=60.76 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=47.2
Q ss_pred cCcccEEEecCCCCCccCCcccccccccEEeccCCCccccccccc-CcCCccEEecCCCchhHHhh--HHHhccccCccc
Q 039954 88 LQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVN-KLYNLHSLLLEDCWELEKLC--ADMGNLAKLHHL 164 (578)
Q Consensus 88 l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~-~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L 164 (578)
......+||+.|.+..+ ..+..+..|.+|.+.+|.|+.|...+. -+++|++|.+.+|.+ ..+- ..+..+++|+.|
T Consensus 41 ~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCcccee
Confidence 33455667777776555 345567777777777777776654443 345677777777632 2221 124555566666
Q ss_pred ccCCCC
Q 039954 165 KNSNTK 170 (578)
Q Consensus 165 ~l~~~~ 170 (578)
.+-+|.
T Consensus 119 tll~Np 124 (233)
T KOG1644|consen 119 TLLGNP 124 (233)
T ss_pred eecCCc
Confidence 555555
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.21 E-value=4.2e-05 Score=68.23 Aligned_cols=88 Identities=24% Similarity=0.218 Sum_probs=64.3
Q ss_pred hhhcccCcccEEEecCCCCCc-----cCCcccccccccEEeccCCCc----cccc-------ccccCcCCccEEecCCCc
Q 039954 83 PKLLKLQRLRVFSLRGYRIPE-----LPDSVGDLRYLRYLNLSGTEI----RTLP-------ESVNKLYNLHSLLLEDCW 146 (578)
Q Consensus 83 ~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~i----~~lp-------~~~~~l~~L~~L~l~~~~ 146 (578)
..+--+..+..++|++|.|.+ +...|.+-.+|++.+++.--. .++| +.+-++++|+..++++|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 344467788999999999842 445667788899998875321 2333 345688999999999996
Q ss_pred hhHHhhH----HHhccccCcccccCCCC
Q 039954 147 ELEKLCA----DMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 147 ~~~~lp~----~l~~l~~L~~L~l~~~~ 170 (578)
+....|. .++.-++|.||.+++|.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCC
Confidence 6544443 36678899999999998
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.00028 Score=64.02 Aligned_cols=176 Identities=13% Similarity=0.136 Sum_probs=85.3
Q ss_pred CCCCccEEEeecCCCCccc---ccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCC-CccccccCCCCC
Q 039954 377 NNTSLETIRIFNCGNLKTL---PSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRL-EALPKGLHNLTS 452 (578)
Q Consensus 377 ~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~ 452 (578)
.+..++.+++.+| .+.++ ...+.++|.|+.|+++.|+....|.....+..+|++|.|.+...- +.....+..+|.
T Consensus 69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 3456666666665 23333 223345666666666665444333322234556666666543211 122233445555
Q ss_pred ccEEEecC-C--cCCcccCC---CCCCCcceeeccc----------cccCCCcccEEEEeecCCCccccCCCCCCCCCCC
Q 039954 453 LQELTIGG-E--LPSLEEDG---LPTNLHSMIERGR----------GFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGT 516 (578)
Q Consensus 453 L~~L~l~~-~--l~~l~~~~---~~~~l~~l~~~~~----------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 516 (578)
+++++++. + .-.+...+ ..+.++.+...+. -..-+|++..+.+..| + +.+...+ +
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~-P-lK~~s~e-------k 218 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG-P-LKTESSE-------K 218 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC-c-ccchhhc-------c
Confidence 55555554 1 11111111 1112223322111 1123677777777773 2 2222221 1
Q ss_pred CCCCCccccEEEeccCCCcccccc--ccCCCCCcceEEeccCCCCcccC
Q 039954 517 ALPLPASLTSLMINNFPNLERLSS--SIVDLQNLTILQLYNCPKLKYFP 563 (578)
Q Consensus 517 ~~~~~~~L~~L~l~~~~~l~~i~~--~~~~l~~L~~L~l~~c~~l~~l~ 563 (578)
.+..++.+.-|.++. .++.+... .+.++++|..|.+...|-...+.
T Consensus 219 ~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 219 GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 124555666677766 46665544 67778888888887755444443
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.79 E-value=7e-05 Score=77.84 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=25.4
Q ss_pred ccEEEeccCCCcccccc-ccC-CCCCcceEEeccCCCCccc
Q 039954 524 LTSLMINNFPNLERLSS-SIV-DLQNLTILQLYNCPKLKYF 562 (578)
Q Consensus 524 L~~L~l~~~~~l~~i~~-~~~-~l~~L~~L~l~~c~~l~~l 562 (578)
++.|+++.|...+.-.. ... .+..++.+++.+|+.+..-
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 78888888876653322 111 1667888888888777653
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.00018 Score=64.50 Aligned_cols=81 Identities=26% Similarity=0.277 Sum_probs=56.1
Q ss_pred hc-ccCcccEEEecCCCCCccCCcccccccccEEeccCCCccccc--ccccCcCCccEEecCCCchhHHhh-----HHHh
Q 039954 85 LL-KLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCWELEKLC-----ADMG 156 (578)
Q Consensus 85 ~~-~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~lp-----~~l~ 156 (578)
++ +|+.|+||.|+-|.|+++ +.+..|++|+.|+|+.|.|..+. ..+.++++|++|.|..|.-...-+ ..+.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 44 888888888888888777 45778888888888888777663 346778888888887653222111 2356
Q ss_pred ccccCccccc
Q 039954 157 NLAKLHHLKN 166 (578)
Q Consensus 157 ~l~~L~~L~l 166 (578)
.|++|+.||-
T Consensus 115 ~LPnLkKLDn 124 (388)
T KOG2123|consen 115 VLPNLKKLDN 124 (388)
T ss_pred HcccchhccC
Confidence 6777777763
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.00016 Score=64.82 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=76.8
Q ss_pred ccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhH--HhhHHHhccccCccc
Q 039954 87 KLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELE--KLCADMGNLAKLHHL 164 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L 164 (578)
.+.+.+.|++.++.++.+ +.+.+++.|++|.|+-|+|+.+ +.+..+++|+.|.|+.|.+.. ++ .-+.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHH-HHHhcCchhhhH
Confidence 467788999999999877 4567899999999999999988 458899999999999884322 22 336788999999
Q ss_pred ccCCCCcccccCCC-----CCCcccccccCc
Q 039954 165 KNSNTKSLEEMPVG-----IGRLTCLQTLCN 190 (578)
Q Consensus 165 ~l~~~~~~~~lp~~-----i~~l~~L~~L~~ 190 (578)
.+..|.-.+.-+.. +..|++|+.|++
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 99888744433322 566777777743
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.59 E-value=0.00029 Score=63.09 Aligned_cols=65 Identities=11% Similarity=-0.049 Sum_probs=40.3
Q ss_pred CCceeEEEeccCCCCCCCC-----CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccC
Q 039954 248 FSNLVTLKFKNCDMCTALP-----SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDM 312 (578)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (578)
+.+|+.|++++|.++..-. .+...+.|++|.+.+|-.-..-...++.......+++|..|...+.
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 6789999999988875322 5667778899999888643333333222222233566666666554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.37 E-value=0.0018 Score=57.98 Aligned_cols=59 Identities=34% Similarity=0.466 Sum_probs=28.2
Q ss_pred ccCcccEEEecCCC--C-CccCCcccccccccEEeccCCCccccc--ccccCcCCccEEecCCC
Q 039954 87 KLQRLRVFSLRGYR--I-PELPDSVGDLRYLRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDC 145 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~--i-~~lp~~i~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~ 145 (578)
.+++|+.|.++.|. + ..++-...++++|++|++++|++..+. .....+++|..||+..|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 55556666665552 2 122222233455666666665544221 12344555555555555
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.31 E-value=0.0019 Score=34.16 Aligned_cols=18 Identities=44% Similarity=0.918 Sum_probs=8.8
Q ss_pred ccEEeccCCCcccccccc
Q 039954 114 LRYLNLSGTEIRTLPESV 131 (578)
Q Consensus 114 L~~L~L~~~~i~~lp~~~ 131 (578)
|++|++++|.++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555544554443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.07 E-value=0.0028 Score=33.48 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=18.4
Q ss_pred cccEEEecCCCCCccCCccccc
Q 039954 90 RLRVFSLRGYRIPELPDSVGDL 111 (578)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~~i~~l 111 (578)
+|++|++++|.++.+|+.|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999998877654
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.00 E-value=0.002 Score=57.74 Aligned_cols=82 Identities=23% Similarity=0.221 Sum_probs=43.0
Q ss_pred ccCcccEEEecCCCCCccCCcccccccccEEeccCC--Cc-ccccccccCcCCccEEecCCCchh--HHhhHHHhccccC
Q 039954 87 KLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGT--EI-RTLPESVNKLYNLHSLLLEDCWEL--EKLCADMGNLAKL 161 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~--~i-~~lp~~~~~l~~L~~L~l~~~~~~--~~lp~~l~~l~~L 161 (578)
.+..|..|.+.+..++++ ..+..+++|++|.++.| .+ ..++....++++|++|++++|.+- ..++. +..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcch
Confidence 555555555555555444 33445666666666666 32 244433444566666666666321 12211 4455556
Q ss_pred cccccCCCC
Q 039954 162 HHLKNSNTK 170 (578)
Q Consensus 162 ~~L~l~~~~ 170 (578)
..|++.+|.
T Consensus 119 ~~Ldl~n~~ 127 (260)
T KOG2739|consen 119 KSLDLFNCS 127 (260)
T ss_pred hhhhcccCC
Confidence 666666655
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.83 E-value=0.065 Score=43.99 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=2.3
Q ss_pred CCCccEEEe
Q 039954 378 NTSLETIRI 386 (578)
Q Consensus 378 l~~L~~L~l 386 (578)
+++|+.+.+
T Consensus 11 ~~~l~~i~~ 19 (129)
T PF13306_consen 11 CSNLESITF 19 (129)
T ss_dssp -TT--EEEE
T ss_pred CCCCCEEEE
Confidence 333444333
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.32 E-value=0.11 Score=42.51 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=12.3
Q ss_pred CCCCCCCcceEEeccCCCccccCC-CCcCCCCccEEEeCc
Q 039954 398 GLHNLGQLQEIRIQKCRNLESFPE-GGLPCAKLTRLTILD 436 (578)
Q Consensus 398 ~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~ 436 (578)
.+.++++|+.+.+.+ .+..++. .+..+++|+.+.+.+
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 344444555555542 1222322 233444455555543
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.63 E-value=0.025 Score=27.59 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=6.0
Q ss_pred cccEEEecCCCCCcc
Q 039954 90 RLRVFSLRGYRIPEL 104 (578)
Q Consensus 90 ~Lr~L~L~~~~i~~l 104 (578)
+|++|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555554444
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.58 E-value=0.021 Score=27.87 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=8.7
Q ss_pred ccccEEeccCCCccccc
Q 039954 112 RYLRYLNLSGTEIRTLP 128 (578)
Q Consensus 112 ~~L~~L~L~~~~i~~lp 128 (578)
++|+.|++++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35677777777766655
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.39 E-value=0.0021 Score=56.37 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=53.3
Q ss_pred ccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCccccc
Q 039954 87 KLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKN 166 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 166 (578)
.++..++||++.|++..+-..+..++.|..|+++.+.+..+|..++.+..++.++++.| .....|.+++..+.++.++.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhh
Confidence 45566666666666655555566666666666666666666666666666666666655 34556666666666666666
Q ss_pred CCCCcc
Q 039954 167 SNTKSL 172 (578)
Q Consensus 167 ~~~~~~ 172 (578)
..+.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 666533
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.90 E-value=0.12 Score=28.51 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=11.6
Q ss_pred ccccEEeccCCCccccccc
Q 039954 112 RYLRYLNLSGTEIRTLPES 130 (578)
Q Consensus 112 ~~L~~L~L~~~~i~~lp~~ 130 (578)
++|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666644
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.90 E-value=0.12 Score=28.51 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=11.6
Q ss_pred ccccEEeccCCCccccccc
Q 039954 112 RYLRYLNLSGTEIRTLPES 130 (578)
Q Consensus 112 ~~L~~L~L~~~~i~~lp~~ 130 (578)
++|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666644
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=0.024 Score=48.91 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=50.4
Q ss_pred ceeEEEeccCCCCCC-CCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccc
Q 039954 250 NLVTLKFKNCDMCTA-LPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVE 328 (578)
Q Consensus 250 ~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 328 (578)
.++.++-+++.+... +..+..++.++.|.+..|.++.+..-...++ ..++|+.|++++|+.+++....- +.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~----L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLAC----LL 173 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHH----HH
Confidence 566677777666543 2356677777777777777666554444333 26667777777776665443222 44
Q ss_pred cCcccceeecccc
Q 039954 329 RFPKLRELHILRC 341 (578)
Q Consensus 329 ~~~~L~~L~l~~~ 341 (578)
.+++|+.|.+.+-
T Consensus 174 ~lknLr~L~l~~l 186 (221)
T KOG3864|consen 174 KLKNLRRLHLYDL 186 (221)
T ss_pred HhhhhHHHHhcCc
Confidence 5666666666553
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.09 E-value=0.03 Score=48.38 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=45.8
Q ss_pred ccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCcccccc-ccCCCCCcceEEeccCCCCcc
Q 039954 484 FHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSS-SIVDLQNLTILQLYNCPKLKY 561 (578)
Q Consensus 484 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~ 561 (578)
+..++.++.|.+.+ |..+.+..-+. .....++|+.|+|++|+.|++-.. .+..+++|+.|.+.+-+.+..
T Consensus 121 L~~l~~i~~l~l~~-ck~~dD~~L~~-------l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 121 LRDLRSIKSLSLAN-CKYFDDWCLER-------LGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred Hhccchhhhheecc-ccchhhHHHHH-------hcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 34556677777777 44433322111 013568999999999999986543 677888899998887665543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.63 E-value=0.02 Score=50.40 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=72.0
Q ss_pred CcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccc
Q 039954 106 DSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCL 185 (578)
Q Consensus 106 ~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L 185 (578)
..|.......+||++.+.+-.+-..+..++.|..||++.| .+..+|..++....+++++.+.|. ....|...++.+.+
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHP 113 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCc
Confidence 3467788899999999988888788889999999999988 678899999999999999999988 88899999999988
Q ss_pred ccc
Q 039954 186 QTL 188 (578)
Q Consensus 186 ~~L 188 (578)
+.+
T Consensus 114 k~~ 116 (326)
T KOG0473|consen 114 KKN 116 (326)
T ss_pred chh
Confidence 877
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.74 E-value=0.35 Score=26.58 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=17.7
Q ss_pred cCcccEEEecCCCCCccCCcc
Q 039954 88 LQRLRVFSLRGYRIPELPDSV 108 (578)
Q Consensus 88 l~~Lr~L~L~~~~i~~lp~~i 108 (578)
+++|++|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 468999999999999997643
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.74 E-value=0.35 Score=26.58 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=17.7
Q ss_pred cCcccEEEecCCCCCccCCcc
Q 039954 88 LQRLRVFSLRGYRIPELPDSV 108 (578)
Q Consensus 88 l~~Lr~L~L~~~~i~~lp~~i 108 (578)
+++|++|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 468999999999999997643
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.11 E-value=0.4 Score=26.39 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=12.7
Q ss_pred CCCcceEEeccCCCCcc
Q 039954 545 LQNLTILQLYNCPKLKY 561 (578)
Q Consensus 545 l~~L~~L~l~~c~~l~~ 561 (578)
+++|+.|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46788888888877765
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.05 E-value=0.98 Score=24.16 Aligned_cols=18 Identities=22% Similarity=0.086 Sum_probs=8.6
Q ss_pred CCccEEecCCCchhHHhh
Q 039954 135 YNLHSLLLEDCWELEKLC 152 (578)
Q Consensus 135 ~~L~~L~l~~~~~~~~lp 152 (578)
++|++|++++|.+....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 456666666665444333
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.14 E-value=1.7 Score=23.91 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=10.2
Q ss_pred ccccEEeccCCCcccc
Q 039954 112 RYLRYLNLSGTEIRTL 127 (578)
Q Consensus 112 ~~L~~L~L~~~~i~~l 127 (578)
.+|++|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5666777777666544
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.59 E-value=1.5 Score=24.06 Aligned_cols=17 Identities=18% Similarity=0.530 Sum_probs=9.7
Q ss_pred cccEEEecCCCCCccCC
Q 039954 90 RLRVFSLRGYRIPELPD 106 (578)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~ 106 (578)
.|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45556666666555554
No 87
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=68.53 E-value=7.7 Score=24.56 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=19.2
Q ss_pred CCcceEEeccCCCCcccCCCCCCCcccceEec
Q 039954 546 QNLTILQLYNCPKLKYFPEKGLPSSLLELDIN 577 (578)
Q Consensus 546 ~~L~~L~l~~c~~l~~l~~~~~~~sL~~l~l~ 577 (578)
++++.|.+.+ ..=+.+....+|+||+.|.+.
T Consensus 12 ~~l~~L~~g~-~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 12 SSLKSLIFGS-SFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCCeEEEECC-ccCccCCCCccCCCceEEEee
Confidence 4677777744 334445566677777777664
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.35 E-value=8 Score=21.62 Aligned_cols=12 Identities=42% Similarity=0.595 Sum_probs=5.5
Q ss_pred cccEEeccCCCc
Q 039954 113 YLRYLNLSGTEI 124 (578)
Q Consensus 113 ~L~~L~L~~~~i 124 (578)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.93 E-value=18 Score=36.89 Aligned_cols=58 Identities=16% Similarity=0.056 Sum_probs=33.6
Q ss_pred CCCCCccEEEeecCC--CCcccccCCCCCCCcceEEeccCCCccccCCC-------CcCCCCccEEE
Q 039954 376 DNNTSLETIRIFNCG--NLKTLPSGLHNLGQLQEIRIQKCRNLESFPEG-------GLPCAKLTRLT 433 (578)
Q Consensus 376 ~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------~~~~~~L~~L~ 433 (578)
...|+|+.|+|++|. .-......-.+...|++|.+.||+..+.+... ...+|.|..||
T Consensus 241 q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 241 QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 345688888888872 22211111224556888888888877655321 12356666665
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.11 E-value=54 Score=33.71 Aligned_cols=64 Identities=14% Similarity=0.047 Sum_probs=33.6
Q ss_pred ccccccEEeccCCCccccc---ccccCcCCccEEecCCCchhHHhhHHHh--ccccCcccccCCCCccc
Q 039954 110 DLRYLRYLNLSGTEIRTLP---ESVNKLYNLHSLLLEDCWELEKLCADMG--NLAKLHHLKNSNTKSLE 173 (578)
Q Consensus 110 ~l~~L~~L~L~~~~i~~lp---~~~~~l~~L~~L~l~~~~~~~~lp~~l~--~l~~L~~L~l~~~~~~~ 173 (578)
+.+.+..++|++|++..+. .-....++|+.|+|++|.....-..++. +...|++|-+.+|++.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 4556666667776654432 2234556777777777622221112232 23346667777776444
Done!