Query 039954
Match_columns 578
No_of_seqs 259 out of 3236
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 05:20:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-37 9.3E-42 332.9 35.0 519 31-577 22-617 (680)
2 3t6q_A CD180 antigen; protein- 100.0 1.8E-36 6.1E-41 322.2 30.4 503 30-578 29-556 (606)
3 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-36 4.6E-41 323.1 27.5 467 31-557 29-556 (606)
4 3rgz_A Protein brassinosteroid 100.0 1.3E-37 4.4E-42 338.2 19.7 388 34-460 151-547 (768)
5 3rgz_A Protein brassinosteroid 100.0 4.1E-37 1.4E-41 334.3 22.8 389 34-460 100-523 (768)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-35 9.4E-40 313.0 25.1 450 34-534 56-557 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-33 3.7E-38 304.8 34.5 488 34-561 49-624 (680)
8 3t6q_A CD180 antigen; protein- 100.0 7.9E-34 2.7E-38 301.8 29.6 472 34-557 57-558 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 5E-32 1.7E-36 297.4 36.8 477 57-577 22-534 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 2.3E-33 7.7E-38 296.3 24.3 473 31-557 25-529 (570)
11 2z7x_B TOLL-like receptor 1, v 100.0 9.3E-33 3.2E-37 287.9 28.2 429 59-578 21-477 (520)
12 4eco_A Uncharacterized protein 100.0 2.5E-34 8.6E-39 305.2 16.4 364 122-567 193-607 (636)
13 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-32 7.5E-37 300.2 31.8 493 32-577 22-555 (844)
14 4eco_A Uncharacterized protein 100.0 4.3E-33 1.5E-37 295.8 24.0 374 81-560 198-633 (636)
15 2z81_A CD282 antigen, TOLL-lik 100.0 3.9E-33 1.3E-37 292.9 22.3 453 34-557 26-508 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-32 4.3E-37 289.0 22.2 449 89-578 26-506 (549)
17 4ecn_A Leucine-rich repeat pro 100.0 2.9E-31 1E-35 286.0 30.1 347 81-533 440-838 (876)
18 4ecn_A Leucine-rich repeat pro 100.0 2.1E-32 7.1E-37 295.0 20.9 364 122-567 435-847 (876)
19 2z63_A TOLL-like receptor 4, v 100.0 1.1E-31 3.8E-36 283.3 24.5 455 59-578 28-527 (570)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.9E-31 2.4E-35 275.9 26.8 447 37-578 34-506 (562)
21 2z7x_B TOLL-like receptor 1, v 100.0 7.1E-31 2.4E-35 273.6 20.3 431 31-557 18-479 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 4.6E-29 1.6E-33 267.0 29.2 491 31-577 49-575 (635)
23 1jl5_A Outer protein YOPM; leu 100.0 1.8E-29 6.1E-34 256.1 19.7 381 87-577 9-424 (454)
24 3v47_A TOLL-like receptor 5B a 100.0 1.7E-27 5.8E-32 243.9 24.8 361 59-533 30-406 (455)
25 1o6v_A Internalin A; bacterial 100.0 2.5E-27 8.7E-32 242.7 25.1 348 56-563 43-391 (466)
26 3v47_A TOLL-like receptor 5B a 100.0 6.8E-27 2.3E-31 239.4 27.4 354 89-560 30-408 (455)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.1E-27 1.7E-31 246.5 25.7 140 32-183 50-195 (562)
28 1o6v_A Internalin A; bacterial 100.0 3.8E-27 1.3E-31 241.4 23.5 321 34-464 46-367 (466)
29 4fmz_A Internalin; leucine ric 99.9 1.3E-26 4.6E-31 228.2 22.8 306 85-560 40-346 (347)
30 3bz5_A Internalin-J, INLJ; leu 99.9 1E-26 3.5E-31 236.1 22.1 194 80-346 33-226 (457)
31 4g8a_A TOLL-like receptor 4; l 99.9 9.6E-27 3.3E-31 249.0 22.5 143 34-185 76-226 (635)
32 2id5_A Lingo-1, leucine rich r 99.9 6.3E-26 2.2E-30 233.5 27.3 294 89-533 32-331 (477)
33 1jl5_A Outer protein YOPM; leu 99.9 2.7E-26 9.2E-31 232.8 22.0 351 105-563 5-373 (454)
34 3o6n_A APL1; leucine-rich repe 99.9 2.7E-26 9.2E-31 229.7 19.7 84 87-170 43-128 (390)
35 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-25 8.4E-30 225.9 25.3 310 53-465 36-354 (457)
36 2id5_A Lingo-1, leucine rich r 99.9 6.4E-26 2.2E-30 233.4 20.8 291 59-460 32-329 (477)
37 4fmz_A Internalin; leucine ric 99.9 1.7E-25 5.8E-30 220.3 18.7 124 52-188 37-160 (347)
38 3oja_B Anopheles plasmodium-re 99.9 2.2E-25 7.4E-30 235.3 19.6 302 87-497 49-354 (597)
39 3o6n_A APL1; leucine-rich repe 99.9 7.9E-25 2.7E-29 219.0 21.8 303 110-532 43-349 (390)
40 2ft3_A Biglycan; proteoglycan, 99.9 7E-24 2.4E-28 207.1 23.1 293 90-557 34-331 (332)
41 1xku_A Decorin; proteoglycan, 99.9 2.2E-23 7.4E-28 203.5 23.2 245 90-466 32-279 (330)
42 3oja_B Anopheles plasmodium-re 99.9 2.2E-24 7.6E-29 227.6 17.2 302 57-460 49-354 (597)
43 4fcg_A Uncharacterized protein 99.9 3.1E-24 1.1E-28 208.5 14.6 231 87-460 79-310 (328)
44 2ft3_A Biglycan; proteoglycan, 99.9 2.4E-22 8.1E-27 196.3 21.4 282 60-460 34-329 (332)
45 1xku_A Decorin; proteoglycan, 99.9 3E-22 1E-26 195.4 21.2 104 80-188 45-150 (330)
46 1ogq_A PGIP-2, polygalacturona 99.9 4.5E-24 1.5E-28 206.1 7.8 235 80-442 67-306 (313)
47 4fcg_A Uncharacterized protein 99.9 5.1E-23 1.8E-27 199.9 13.0 112 58-177 80-200 (328)
48 3ogk_B Coronatine-insensitive 99.9 3.3E-24 1.1E-28 227.2 1.7 278 248-563 219-529 (592)
49 1ogq_A PGIP-2, polygalacturona 99.9 6.6E-23 2.3E-27 197.9 9.2 254 34-420 50-308 (313)
50 3zyj_A Leucine-rich repeat-con 99.9 2.9E-20 9.8E-25 188.8 22.6 65 375-439 227-291 (440)
51 3zyi_A Leucine-rich repeat-con 99.9 2.5E-20 8.4E-25 190.0 21.8 65 374-438 237-301 (452)
52 2z80_A TOLL-like receptor 2, v 99.9 7.4E-21 2.5E-25 187.3 17.0 89 79-170 44-135 (353)
53 1z7x_W Ribonuclease inhibitor; 99.9 1.8E-24 6E-29 221.9 -10.1 191 248-460 141-350 (461)
54 3ogk_B Coronatine-insensitive 99.9 6.2E-23 2.1E-27 217.4 1.1 102 87-188 110-225 (592)
55 2z66_A Variable lymphocyte rec 99.8 2E-20 6.7E-25 180.5 17.7 76 93-170 11-89 (306)
56 2z80_A TOLL-like receptor 2, v 99.8 6.4E-21 2.2E-25 187.8 13.9 84 85-169 72-159 (353)
57 2z66_A Variable lymphocyte rec 99.8 2.2E-20 7.6E-25 180.1 16.7 232 79-439 20-260 (306)
58 3g06_A SSPH2 (leucine-rich rep 99.8 7.5E-20 2.6E-24 191.0 20.6 254 89-460 40-293 (622)
59 1z7x_W Ribonuclease inhibitor; 99.8 1.1E-23 3.8E-28 216.0 -9.8 150 33-188 2-175 (461)
60 3o53_A Protein LRIM1, AGAP0063 99.8 2.8E-21 9.6E-26 187.1 7.6 245 79-460 23-271 (317)
61 3g06_A SSPH2 (leucine-rich rep 99.8 2.2E-19 7.5E-24 187.5 20.8 265 60-448 41-305 (622)
62 3zyi_A Leucine-rich repeat-con 99.8 1.3E-19 4.4E-24 184.7 18.6 234 79-416 67-303 (452)
63 3zyj_A Leucine-rich repeat-con 99.8 1.9E-19 6.4E-24 182.8 19.7 233 79-416 56-292 (440)
64 3oja_A Leucine-rich immune mol 99.8 3.5E-20 1.2E-24 189.8 8.8 236 87-459 32-270 (487)
65 2p1m_B Transport inhibitor res 99.8 2.8E-21 9.5E-26 204.8 0.4 325 82-460 58-441 (594)
66 1wwl_A Monocyte differentiatio 99.8 2.1E-20 7.2E-25 180.5 5.4 251 87-462 41-308 (312)
67 1ozn_A Reticulon 4 receptor; N 99.8 1.6E-18 5.5E-23 165.2 17.4 77 92-170 14-91 (285)
68 3o53_A Protein LRIM1, AGAP0063 99.8 9.2E-20 3.2E-24 176.4 7.0 81 377-460 142-223 (317)
69 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-17 4.7E-22 158.7 19.3 219 114-460 13-234 (285)
70 1wwl_A Monocyte differentiatio 99.8 1.1E-19 3.7E-24 175.4 3.9 103 376-497 198-305 (312)
71 2p1m_B Transport inhibitor res 99.8 4.1E-21 1.4E-25 203.5 -7.0 204 56-282 102-324 (594)
72 2z62_A TOLL-like receptor 4, v 99.7 3.4E-17 1.2E-21 155.1 16.0 82 89-170 28-111 (276)
73 3oja_A Leucine-rich immune mol 99.7 2.5E-17 8.6E-22 168.6 14.9 234 248-554 33-270 (487)
74 1p9a_G Platelet glycoprotein I 99.7 1.1E-16 3.6E-21 152.3 17.5 81 86-170 7-88 (290)
75 3rfs_A Internalin B, repeat mo 99.7 6.1E-17 2.1E-21 152.8 15.0 91 248-357 156-247 (272)
76 3rfs_A Internalin B, repeat mo 99.7 9.1E-17 3.1E-21 151.6 14.2 83 86-170 38-120 (272)
77 2o6q_A Variable lymphocyte rec 99.7 4E-16 1.4E-20 147.1 18.6 78 90-170 17-96 (270)
78 2ast_B S-phase kinase-associat 99.7 2.5E-18 8.5E-23 168.2 2.2 81 89-169 70-152 (336)
79 2xwt_C Thyrotropin receptor; s 99.7 3.6E-16 1.2E-20 144.6 14.9 205 341-578 20-235 (239)
80 2o6q_A Variable lymphocyte rec 99.7 2.7E-15 9.3E-20 141.4 20.7 158 374-557 56-216 (270)
81 1p9a_G Platelet glycoprotein I 99.7 1.8E-15 6.2E-20 143.8 17.8 157 373-557 49-206 (290)
82 2ca6_A RAN GTPase-activating p 99.7 3.1E-18 1.1E-22 170.8 -1.9 93 79-171 22-134 (386)
83 2z62_A TOLL-like receptor 4, v 99.7 6.3E-16 2.2E-20 146.4 14.0 200 301-555 27-233 (276)
84 2xwt_C Thyrotropin receptor; s 99.6 3.6E-15 1.2E-19 137.8 16.7 182 248-465 30-220 (239)
85 4ay9_X Follicle-stimulating ho 99.6 6.9E-15 2.3E-19 144.2 19.6 184 249-466 30-218 (350)
86 1h6u_A Internalin H; cell adhe 99.6 1.4E-15 4.7E-20 146.1 14.3 81 248-345 150-230 (308)
87 2ca6_A RAN GTPase-activating p 99.6 1.5E-18 5E-23 173.1 -7.2 81 91-171 11-106 (386)
88 4ay9_X Follicle-stimulating ho 99.6 1.8E-14 6.1E-19 141.2 21.0 237 252-555 12-255 (350)
89 3goz_A Leucine-rich repeat-con 99.6 1E-16 3.5E-21 158.0 3.3 96 75-170 8-120 (362)
90 1h6u_A Internalin H; cell adhe 99.6 4.1E-15 1.4E-19 142.8 13.9 121 54-188 36-156 (308)
91 2ast_B S-phase kinase-associat 99.6 1.7E-16 5.6E-21 155.2 3.6 257 33-354 46-315 (336)
92 3m19_A Variable lymphocyte rec 99.6 3.1E-14 1E-18 132.6 18.3 134 375-532 55-189 (251)
93 4glp_A Monocyte differentiatio 99.6 5.9E-15 2E-19 142.1 13.2 160 374-561 140-308 (310)
94 3goz_A Leucine-rich repeat-con 99.6 1.5E-16 5.2E-21 156.9 1.1 80 93-172 2-93 (362)
95 3m19_A Variable lymphocyte rec 99.6 7.6E-14 2.6E-18 129.8 17.1 167 366-560 24-192 (251)
96 4glp_A Monocyte differentiatio 99.5 4.3E-14 1.5E-18 136.1 14.5 222 35-313 65-305 (310)
97 3cvr_A Invasion plasmid antige 99.5 4.7E-14 1.6E-18 145.4 13.6 72 90-170 60-131 (571)
98 4ezg_A Putative uncharacterize 99.5 1.3E-14 4.3E-19 129.6 7.6 106 56-170 41-147 (197)
99 2o6s_A Variable lymphocyte rec 99.5 8.2E-14 2.8E-18 125.6 13.1 82 89-170 28-111 (208)
100 1h6t_A Internalin B; cell adhe 99.5 4.3E-14 1.5E-18 134.4 11.1 80 87-170 44-123 (291)
101 4ezg_A Putative uncharacterize 99.5 1.5E-13 5.3E-18 122.6 11.6 124 35-170 45-170 (197)
102 1h6t_A Internalin B; cell adhe 99.5 3.3E-13 1.1E-17 128.3 12.8 172 352-564 45-217 (291)
103 1m9s_A Internalin B; cell inva 99.5 1.6E-13 5.5E-18 143.2 11.1 99 84-188 60-158 (605)
104 3e6j_A Variable lymphocyte rec 99.4 4.7E-13 1.6E-17 122.4 11.2 98 79-179 32-131 (229)
105 2v9t_B SLIT homolog 2 protein 99.4 5.7E-13 2E-17 120.9 11.6 128 89-283 32-163 (220)
106 1xeu_A Internalin C; cellular 99.4 3.8E-13 1.3E-17 125.8 9.6 148 84-283 36-183 (263)
107 1m9s_A Internalin B; cell inva 99.4 3.9E-13 1.3E-17 140.3 10.7 82 85-170 83-164 (605)
108 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4.2E-17 118.7 12.2 138 79-284 24-165 (220)
109 1dce_A Protein (RAB geranylger 99.4 1.8E-15 6.2E-20 156.9 -7.9 63 375-439 482-545 (567)
110 2ell_A Acidic leucine-rich nuc 99.4 2.6E-13 8.8E-18 117.8 6.8 87 87-175 22-110 (168)
111 2v9t_B SLIT homolog 2 protein 99.4 4.2E-12 1.4E-16 115.2 14.8 140 367-532 22-162 (220)
112 3e6j_A Variable lymphocyte rec 99.4 4.9E-12 1.7E-16 115.6 14.9 140 366-533 29-170 (229)
113 1xeu_A Internalin C; cellular 99.4 3E-13 1E-17 126.4 5.5 85 87-176 17-101 (263)
114 3cvr_A Invasion plasmid antige 99.4 5.3E-12 1.8E-16 130.2 15.3 139 379-555 100-239 (571)
115 2je0_A Acidic leucine-rich nuc 99.4 4E-13 1.4E-17 113.9 5.3 107 80-188 33-145 (149)
116 2xot_A Amphoterin-induced prot 99.4 4.1E-12 1.4E-16 124.9 13.3 127 334-465 21-151 (361)
117 2ell_A Acidic leucine-rich nuc 99.3 3.9E-12 1.3E-16 110.3 10.9 137 31-177 21-164 (168)
118 2je0_A Acidic leucine-rich nuc 99.3 9.7E-13 3.3E-17 111.6 5.8 130 31-168 14-149 (149)
119 1w8a_A SLIT protein; signaling 99.3 4.3E-12 1.5E-16 112.5 9.7 77 92-170 11-89 (192)
120 2v70_A SLIT-2, SLIT homolog 2 99.3 3.8E-12 1.3E-16 115.5 9.4 126 59-190 32-160 (220)
121 2wfh_A SLIT homolog 2 protein 99.3 9.5E-12 3.2E-16 110.2 10.8 77 92-170 13-89 (193)
122 2o6s_A Variable lymphocyte rec 99.3 6.3E-11 2.2E-15 106.6 16.2 163 367-563 18-182 (208)
123 2xot_A Amphoterin-induced prot 99.2 6.9E-11 2.4E-15 116.1 14.7 167 366-556 28-199 (361)
124 1a9n_A U2A', U2A'; complex (nu 99.2 6.3E-12 2.2E-16 109.7 6.4 125 53-188 13-145 (176)
125 1w8a_A SLIT protein; signaling 99.2 1.3E-11 4.5E-16 109.3 7.1 99 90-188 30-131 (192)
126 4b8c_D Glucose-repressible alc 99.2 9.3E-12 3.2E-16 133.3 6.7 150 34-189 173-322 (727)
127 2wfh_A SLIT homolog 2 protein 99.2 2E-11 7E-16 108.0 6.4 99 89-188 31-131 (193)
128 3sb4_A Hypothetical leucine ri 99.2 1.1E-10 3.7E-15 113.1 11.8 87 248-345 48-137 (329)
129 1a9n_A U2A', U2A'; complex (nu 99.2 6.2E-11 2.1E-15 103.4 8.9 126 33-170 18-151 (176)
130 1dce_A Protein (RAB geranylger 99.2 4.7E-11 1.6E-15 123.8 8.8 97 90-189 442-539 (567)
131 1ds9_A Outer arm dynein; leuci 99.1 2.1E-13 7.3E-18 121.7 -8.6 89 79-170 38-126 (198)
132 4b8c_D Glucose-repressible alc 99.1 2.1E-11 7.3E-16 130.5 5.3 121 53-181 218-338 (727)
133 4fs7_A Uncharacterized protein 99.1 3.2E-09 1.1E-13 105.6 20.5 143 376-551 250-393 (394)
134 2o6r_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 98.9 10.8 77 92-170 10-87 (177)
135 4fdw_A Leucine rich hypothetic 99.1 2.2E-08 7.4E-13 99.1 23.3 241 267-577 131-378 (401)
136 3sb4_A Hypothetical leucine ri 99.1 1.2E-09 4.2E-14 105.7 13.1 216 330-576 24-328 (329)
137 1ds9_A Outer arm dynein; leuci 99.0 4.2E-12 1.4E-16 113.2 -5.3 125 54-188 43-179 (198)
138 2r9u_A Variable lymphocyte rec 99.0 1.8E-10 6.3E-15 99.9 5.0 95 79-177 25-122 (174)
139 2o6r_A Variable lymphocyte rec 99.0 8.5E-10 2.9E-14 96.3 8.1 83 87-170 50-135 (177)
140 3g39_A Variable lymphocyte rec 99.0 9.9E-10 3.4E-14 94.9 7.3 89 79-170 22-113 (170)
141 4fs7_A Uncharacterized protein 98.9 5E-08 1.7E-12 96.9 20.0 58 399-460 293-352 (394)
142 2r9u_A Variable lymphocyte rec 98.9 1.2E-09 4E-14 94.8 6.6 96 91-190 14-112 (174)
143 3g39_A Variable lymphocyte rec 98.9 1.3E-09 4.4E-14 94.2 6.7 97 90-190 10-109 (170)
144 4fdw_A Leucine rich hypothetic 98.8 2.4E-07 8.1E-12 91.6 18.9 172 374-577 175-353 (401)
145 2ifg_A High affinity nerve gro 98.6 2.1E-08 7.2E-13 97.9 5.9 91 78-170 21-114 (347)
146 2ifg_A High affinity nerve gro 98.6 5.2E-08 1.8E-12 95.0 5.9 93 94-189 13-109 (347)
147 4gt6_A Cell surface protein; l 98.5 1E-05 3.4E-10 80.2 19.4 104 375-497 261-366 (394)
148 4gt6_A Cell surface protein; l 98.4 4.6E-05 1.6E-09 75.4 21.4 261 250-555 65-366 (394)
149 3un9_A NLR family member X1; l 98.3 1E-07 3.5E-12 93.3 0.2 131 34-171 72-223 (372)
150 3un9_A NLR family member X1; l 98.3 3.9E-07 1.3E-11 89.1 4.0 134 34-173 101-253 (372)
151 2ra8_A Uncharacterized protein 98.2 5.3E-07 1.8E-11 87.4 4.0 85 82-168 132-228 (362)
152 2ra8_A Uncharacterized protein 98.1 2.1E-06 7.1E-11 83.3 5.8 130 328-460 169-316 (362)
153 3e4g_A ATP synthase subunit S, 98.1 1.9E-06 6.5E-11 73.1 4.8 69 484-561 81-154 (176)
154 4h09_A Hypothetical leucine ri 98.1 0.00035 1.2E-08 68.6 21.6 139 397-567 211-352 (379)
155 4h09_A Hypothetical leucine ri 98.0 0.00057 1.9E-08 67.1 21.7 278 248-576 45-340 (379)
156 3rw6_A Nuclear RNA export fact 98.0 4.5E-06 1.5E-10 76.6 5.9 79 87-166 168-258 (267)
157 3e4g_A ATP synthase subunit S, 98.0 4.2E-06 1.5E-10 71.0 4.8 85 89-173 61-153 (176)
158 1io0_A Tropomodulin; LRR prote 97.9 1.5E-05 5E-10 69.5 5.4 112 54-170 31-162 (185)
159 1io0_A Tropomodulin; LRR prote 97.7 7.2E-06 2.4E-10 71.5 1.1 106 83-188 30-156 (185)
160 3rw6_A Nuclear RNA export fact 97.6 4.4E-06 1.5E-10 76.6 -2.3 101 87-189 139-257 (267)
161 3rfe_A Platelet glycoprotein I 96.0 0.01 3.6E-07 47.6 5.7 53 92-146 11-66 (130)
162 1pgv_A TMD-1, tropomodulin TMD 95.0 0.019 6.5E-07 49.5 4.1 83 87-169 39-136 (197)
163 3rfe_A Platelet glycoprotein I 94.8 0.035 1.2E-06 44.5 4.9 37 519-556 28-65 (130)
164 1pgv_A TMD-1, tropomodulin TMD 92.8 0.088 3E-06 45.4 4.1 109 57-170 39-168 (197)
165 2lz0_A Uncharacterized protein 52.3 14 0.00049 27.4 3.8 39 445-497 14-52 (100)
166 2lz0_A Uncharacterized protein 37.3 44 0.0015 24.7 4.4 16 482-497 14-29 (100)
167 2a5y_B CED-4; apoptosis; HET: 36.0 9 0.00031 39.0 0.6 18 1-18 456-473 (549)
No 1
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-37 Score=332.89 Aligned_cols=519 Identities=15% Similarity=0.101 Sum_probs=305.1
Q ss_pred CCCCCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCC-ccc
Q 039954 31 SFSENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPD-SVG 109 (578)
Q Consensus 31 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~ 109 (578)
..+.+++++.+..+.+.... ...+.++++|++|.+.+ +.+....|..|.++++|++|++++|.++.+|. .|+
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGF------NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCS------SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCC------CccCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 35678999999988776543 24688899999996543 34455556667799999999999999998875 699
Q ss_pred ccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCC--CCccccc
Q 039954 110 DLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGI--GRLTCLQ 186 (578)
Q Consensus 110 ~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i--~~l~~L~ 186 (578)
++++|++|++++|.+..+| ..++++++|++|++++|......|..++.+++|++|++++|.+....+..+ ..+++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 9999999999999998886 678999999999999996666666678899999999999998443333333 3457788
Q ss_pred ccCcceeecCCCCCccccccccccccceeeccccCc-------------cccchhhhhcCCCCCCCCCCcCCCCCCceeE
Q 039954 187 TLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENV-------------KDVGNAKEARGYGGTNFPAWLGDSSFSNLVT 253 (578)
Q Consensus 187 ~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 253 (578)
.|....... .......+..+..++ .+.+....-. ..+..............|.++.....++|+.
T Consensus 175 ~L~L~~n~l-~~~~~~~~~~l~~L~-~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 175 KLELSSNQI-KEFSPGCFHAIGRLF-GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp EEECTTCCC-CCBCTTGGGGSSEEC-EEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred EEECCCCcc-cccChhhhhhhhhhh-hhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence 774433211 111122222232222 2222111100 0000000000001111233333311234888
Q ss_pred EEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCC----Cccc
Q 039954 254 LKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSS----QGVE 328 (578)
Q Consensus 254 L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~ 328 (578)
|++++|.+.+..+ .+..+++|++|++++|......+..+ ..+++|+.|++.++...........+ ..+.
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL------HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT------TTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh------cCCCCccEEeccchhhhcccccccccccChhhcc
Confidence 8888887776554 67778888888888775433322222 22666666666543211100000000 0144
Q ss_pred cCcccceeecccccccccCCCCCCCC---CcceEEE-------------------------EecCCchhh-HHHhcCCCC
Q 039954 329 RFPKLRELHILRCSKLQGTFPEHLPA---LEKLSLY-------------------------VYGCSKLES-IAERLDNNT 379 (578)
Q Consensus 329 ~~~~L~~L~l~~~~~l~~~~~~~l~~---l~~L~l~-------------------------~~~~~~l~~-i~~~~~~l~ 379 (578)
.+++|++|++++| .+.+..+..+.. ++.|.+. ..+.+.+.. .|..+.+++
T Consensus 327 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 327 WLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred cCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 5566666666665 454333333332 2222211 001111222 244566677
Q ss_pred CccEEEeecCCCCcccc-cCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCC--CccccccCCCCCccEE
Q 039954 380 SLETIRIFNCGNLKTLP-SGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRL--EALPKGLHNLTSLQEL 456 (578)
Q Consensus 380 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L 456 (578)
+|++|++++|.....++ ..+..+++|++|++++|......+..+..+++|+.|++++|... +.+|..+.++++|++|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 77777777775544443 45666777777777776655444555666677777777776543 4566677777777777
Q ss_pred EecC-CcCCcccCCC--CCCCcceeeccc----------------cccCCCcccEEEEeecCCCccccCCCCCCCCCCCC
Q 039954 457 TIGG-ELPSLEEDGL--PTNLHSMIERGR----------------GFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTA 517 (578)
Q Consensus 457 ~l~~-~l~~l~~~~~--~~~l~~l~~~~~----------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 517 (578)
++++ .+..++...+ ..+|+.+.+..+ .+.++++|+.|++++ +.+..+|.+.
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~-------- 555 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEIPVEV-------- 555 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCCCTTT--------
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC--CCCCCCCHHH--------
Confidence 7777 6666654432 234444444322 145566677777766 3555565543
Q ss_pred CCCCccccEEEeccCCCcccccc-ccCCCCCcceEEeccCCCCcccCCCCC---CCcccceEec
Q 039954 518 LPLPASLTSLMINNFPNLERLSS-SIVDLQNLTILQLYNCPKLKYFPEKGL---PSSLLELDIN 577 (578)
Q Consensus 518 ~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~sL~~l~l~ 577 (578)
+..+++|++|++++ ++++.+|. .+..+++|++|++++ ++++.+++..+ .++|+.|++.
T Consensus 556 ~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 556 FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECT
T ss_pred cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhcccccccCEEEcc
Confidence 24556777777766 46666665 456667777777776 46666655432 2466666654
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-36 Score=322.16 Aligned_cols=503 Identities=14% Similarity=0.093 Sum_probs=338.8
Q ss_pred cCCCCCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCcc-CCcc
Q 039954 30 QSFSENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPEL-PDSV 108 (578)
Q Consensus 30 ~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i 108 (578)
..++..++++.+..+.+.... ..++.++++|++|.+.+ |.+....|..|.++++|++|++++|.+..+ |..+
T Consensus 29 ~~l~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTR------CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp TTSCTTCCEEECTTCCCSEEC-TTTSTTCTTCSEEECTT------CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred CCCCCcCcEEEccCCccCcCC-hhHhccCccceEEECCC------CccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence 346678999999988877543 35788999999995543 345555577777999999999999999776 7789
Q ss_pred cccccccEEeccCCCcccc-cccccCcCCccEEecCCCchhH-HhhHHHhccccCcccccCCCCcccccCCCCCCccccc
Q 039954 109 GDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCWELE-KLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQ 186 (578)
Q Consensus 109 ~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 186 (578)
+++++|++|++++|.+..+ |..++++++|++|++++|.... ..|. +..+++|++|++++|.+....|..++.+++|+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 9999999999999999887 5778999999999999995544 2344 44589999999999985544456677788777
Q ss_pred ccCcceeecCCCCCccccccccccccceeeccccCccccchhhhh-----------cCCCCCCCC-CCcCCCCCCceeEE
Q 039954 187 TLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEA-----------RGYGGTNFP-AWLGDSSFSNLVTL 254 (578)
Q Consensus 187 ~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~L~~L 254 (578)
.+.....++.-.......-....++ .+.+............... .......++ ..+....-.+|+.|
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQ-SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEE-EEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred eeEEecCCCccCccChhHhhhcccc-ccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 3311111111100001110111111 2222211110000000000 000000111 11111001279999
Q ss_pred EeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCccc
Q 039954 255 KFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKL 333 (578)
Q Consensus 255 ~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 333 (578)
++++|.+.+..+ .+..+++|++|++++|. ++.++..+ ..+++|++|++.++... .... ..+..+++|
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l------~~l~~L~~L~l~~n~l~-~~~~----~~~~~l~~L 327 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGL------VGLSTLKKLVLSANKFE-NLCQ----ISASNFPSL 327 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSC------CSCTTCCEEECTTCCCS-BGGG----GCGGGCTTC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhh------cccccCCEEECccCCcC-cCch----hhhhccCcC
Confidence 999999887665 58899999999999986 44554433 23889999999987532 2111 126789999
Q ss_pred ceeecccccccccCCCCC-CCCCcceEEEEecCCchhhH---HHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEE
Q 039954 334 RELHILRCSKLQGTFPEH-LPALEKLSLYVYGCSKLESI---AERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIR 409 (578)
Q Consensus 334 ~~L~l~~~~~l~~~~~~~-l~~l~~L~l~~~~~~~l~~i---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 409 (578)
++|++++| .+.+.+|.. +..+..|+....+.+.+..+ +..+..+++|++|++++|......+..+..+++|++|+
T Consensus 328 ~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 328 THLSIKGN-TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp SEEECCSC-SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CEEECCCC-CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 99999998 555455432 44444443333333344433 56788999999999999976666678888999999999
Q ss_pred eccCCCccccCC-CCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccCC
Q 039954 410 IQKCRNLESFPE-GGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRF 487 (578)
Q Consensus 410 l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l 487 (578)
+++|......+. .+..+++|+.|++++|......|..+..+++|++|++++ .+...... ....+..+
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------~~~~~~~l 475 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-----------KTNSLQTL 475 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-----------SSCGGGGC
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc-----------cchhhccC
Confidence 999876655554 377889999999999987777788889999999999998 66442100 01247788
Q ss_pred CcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccc-cccccCCCCCcceEEeccCCCCcccCCCC
Q 039954 488 SSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLER-LSSSIVDLQNLTILQLYNCPKLKYFPEKG 566 (578)
Q Consensus 488 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-i~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 566 (578)
++|+.|++++ | .+..++... +..+++|++|++++| .++. .|..+..+++| .|++++ ++++.+++..
T Consensus 476 ~~L~~L~Ls~-n-~l~~~~~~~--------~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~-N~l~~~~~~~ 542 (606)
T 3t6q_A 476 GRLEILVLSF-C-DLSSIDQHA--------FTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLAS-NHISIILPSL 542 (606)
T ss_dssp TTCCEEECTT-S-CCCEECTTT--------TTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCS-SCCCCCCGGG
T ss_pred CCccEEECCC-C-ccCccChhh--------hccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcC-CcccccCHhh
Confidence 9999999998 3 555554333 256789999999996 5554 45588899999 999998 6888877654
Q ss_pred CC--CcccceEecC
Q 039954 567 LP--SSLLELDINR 578 (578)
Q Consensus 567 ~~--~sL~~l~l~~ 578 (578)
+. ++|+.|++.+
T Consensus 543 ~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 543 LPILSQQRTINLRQ 556 (606)
T ss_dssp HHHHHTSSEEECTT
T ss_pred cccCCCCCEEeCCC
Confidence 32 4788888763
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-36 Score=323.14 Aligned_cols=467 Identities=15% Similarity=0.114 Sum_probs=279.6
Q ss_pred CCCCCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCcc-CCccc
Q 039954 31 SFSENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPEL-PDSVG 109 (578)
Q Consensus 31 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~ 109 (578)
.++..++++.+..+.+.... ...+.++++|++|.+.+ |.+....|..|.++++|++|++++|.++.+ |..|+
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~------n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSR------CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp TSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTT------CCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CCCCCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCC------CcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 45678999999988876543 25788999999995543 344444456677999999999999999887 88999
Q ss_pred ccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhH-HhhHHHhccccCcccccCCCCcccccCCCCCCcccccc
Q 039954 110 DLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELE-KLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQT 187 (578)
Q Consensus 110 ~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 187 (578)
++++|++|++++|.+..+| ..++++++|++|++++|.... .+|..++++++|++|++++|.+....|..++.+++|+.
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 9999999999999998886 679999999999999996544 57889999999999999999965555666777777663
Q ss_pred ----cCcceeecCCCCCccccccccccccceeeccc---------------------------cCccccc---hhhh---
Q 039954 188 ----LCNFVVGNGSGSGLSELKLLMHLRGALEISKL---------------------------ENVKDVG---NAKE--- 230 (578)
Q Consensus 188 ----L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~---------------------------~~~~~~~---~~~~--- 230 (578)
|....... ...........+++ .+.+... .....+. ....
T Consensus 182 ~l~~L~l~~n~l--~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 182 VNLSLDMSLNPI--DFIQDQAFQGIKLH-ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp CCCEEECTTCCC--CEECTTTTTTCEEE-EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred ccceeeccCCCc--ceeCcccccCceee-eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 32111100 00000000000111 1111111 0000000 0000
Q ss_pred -----------hcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCC
Q 039954 231 -----------ARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPI 299 (578)
Q Consensus 231 -----------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 299 (578)
.........|. +. .+++|+.|+++++.+. .++.+..+++|++|++++|.. +.++ .+
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~-~~--~l~~L~~L~l~~~~~~-~l~~l~~~~~L~~L~l~~n~l-~~lp-~~------- 325 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVK-FH--CLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQL-KQFP-TL------- 325 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGS-CG--GGTTCSEEEEESCCCC-CCCCCCTTCCCSEEEEESCCC-SSCC-CC-------
T ss_pred hhccHhheeccccccccccccc-cc--cCCCCCEEEecCccch-hhhhccccccCCEEEcccccC-cccc-cC-------
Confidence 00000001111 21 2567777777777764 344666777777777777753 3333 11
Q ss_pred CCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccC--CCCC---CCCCcceEEEEecCCchhhHHHh
Q 039954 300 PFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGT--FPEH---LPALEKLSLYVYGCSKLESIAER 374 (578)
Q Consensus 300 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~---l~~l~~L~l~~~~~~~l~~i~~~ 374 (578)
.+++|++|++.++...... .+..+++|++|++++| .+++. .|.. +++++.|.+ +.+.+..+|..
T Consensus 326 ~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L---~~n~l~~~~~~ 394 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF-------KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDL---SFNGAIIMSAN 394 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC-------CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEEC---CSCSEEEECCC
T ss_pred CCCccceeeccCCcCccch-------hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeEC---CCCccccchhh
Confidence 2677777777776443322 1456777777777776 45432 1322 333333322 22334445555
Q ss_pred cCCCCCccEEEeecCCCCcccc-cCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCC-ccccccCCCCC
Q 039954 375 LDNNTSLETIRIFNCGNLKTLP-SGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLE-ALPKGLHNLTS 452 (578)
Q Consensus 375 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~ 452 (578)
+.++++|++|++++|......+ ..+..+++|++|++++|...+..|..+..+++|+.|++++|...+ .+|..+..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 5666666666666664443333 355566666666666666555555556666666666666665444 24556666666
Q ss_pred ccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCcccc-CCCCCCCCCCCCCCCCccccEEEec
Q 039954 453 LQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSF-PPKADDKGSGTALPLPASLTSLMIN 530 (578)
Q Consensus 453 L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~ 530 (578)
|++|++++ .+..++. ..+.++++|++|++++ + .+..+ |... ..+++|++|+++
T Consensus 475 L~~L~Ls~n~l~~~~~--------------~~~~~l~~L~~L~Ls~-N-~l~~~~~~~~---------~~l~~L~~L~l~ 529 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISW--------------GVFDTLHRLQLLNMSH-N-NLLFLDSSHY---------NQLYSLSTLDCS 529 (606)
T ss_dssp CCEEECTTSCCCEECT--------------TTTTTCTTCCEEECCS-S-CCSCEEGGGT---------TTCTTCCEEECT
T ss_pred CCEEECCCCcCCccCh--------------hhhcccccCCEEECCC-C-cCCCcCHHHc---------cCCCcCCEEECC
Confidence 66666666 4444322 1345566677777766 2 33333 3222 445666777776
Q ss_pred cCCCccccccccCCCC-CcceEEeccCC
Q 039954 531 NFPNLERLSSSIVDLQ-NLTILQLYNCP 557 (578)
Q Consensus 531 ~~~~l~~i~~~~~~l~-~L~~L~l~~c~ 557 (578)
+| .++.+|..+..++ +|++|++++|+
T Consensus 530 ~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 530 FN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred CC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 64 5666666555665 46777776643
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-37 Score=338.22 Aligned_cols=388 Identities=18% Similarity=0.137 Sum_probs=256.8
Q ss_pred CCeeEEEeeeCCCCccccccC---ccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcccc
Q 039954 34 ENLRHLSYIRGDYDGVQRFGD---LYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGD 110 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~---~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~ 110 (578)
.+++++.+..+.+.... ... +.++++|++|.+.+ |.+....+ +..+++|++|++++|.+...+..++.
T Consensus 151 ~~L~~L~Ls~n~l~~~~-~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~ 221 (768)
T 3rgz_A 151 NSLEVLDLSANSISGAN-VVGWVLSDGCGELKHLAISG------NKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGD 221 (768)
T ss_dssp TTCSEEECCSSCCEEET-HHHHHHTTCCTTCCEEECCS------SEEESCCB--CTTCTTCCEEECCSSCCCSCCCBCTT
T ss_pred CCCCEEECCCCccCCcC-ChhhhhhccCCCCCEEECCC------CcccccCC--cccCCcCCEEECcCCcCCCCCccccc
Confidence 56888888777665322 112 56788888885543 23333322 25888999999999988765344888
Q ss_pred cccccEEeccCCCcc-cccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCc-cccccc
Q 039954 111 LRYLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRL-TCLQTL 188 (578)
Q Consensus 111 l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l-~~L~~L 188 (578)
+++|++|++++|.+. .+|..++.+++|++|++++|.....+|.. .+++|++|++++|.+.+.+|..+... ++|+.|
T Consensus 222 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L 299 (768)
T 3rgz_A 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299 (768)
T ss_dssp CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEE
Confidence 999999999999876 66788889999999999988665555543 78889999999988666888887664 888887
Q ss_pred CcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCC-cCCCCCCceeEEEeccCCCCCCCC-
Q 039954 189 CNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAW-LGDSSFSNLVTLKFKNCDMCTALP- 266 (578)
Q Consensus 189 ~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~- 266 (578)
+...... .......+..+..++ .+.+....-.. .+|.. +.. +++|+.|++++|.+.+.++
T Consensus 300 ~Ls~n~l-~~~~p~~~~~l~~L~-~L~L~~n~l~~--------------~ip~~~l~~--l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 300 DLSGNHF-YGAVPPFFGSCSLLE-SLALSSNNFSG--------------ELPMDTLLK--MRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp ECCSSEE-EECCCGGGGGCTTCC-EEECCSSEEEE--------------ECCHHHHTT--CTTCCEEECCSSEEEECCCT
T ss_pred ECcCCcC-CCccchHHhcCCCcc-EEECCCCcccC--------------cCCHHHHhc--CCCCCEEeCcCCccCccccH
Confidence 4333221 112233444444444 44443221110 12221 222 6788888888887775555
Q ss_pred CCCCCC-CcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccc
Q 039954 267 SVGQLP-SLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQ 345 (578)
Q Consensus 267 ~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 345 (578)
.+..++ +|++|++++|.....++..+. ...+++|+.|++.++.... ..+..++.+++|++|++++| .+.
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~----~~~~~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N-~l~ 431 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLC----QNPKNTLQELYLQNNGFTG-----KIPPTLSNCSELVSLHLSFN-YLS 431 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTT----CSTTCCCCEEECCSSEEEE-----ECCGGGGGCTTCCEEECCSS-EEE
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhh----hcccCCccEEECCCCcccc-----ccCHHHhcCCCCCEEECcCC-ccc
Confidence 555665 788888887764433333221 1125678888887764221 11222667778888888887 666
Q ss_pred cCCCCCCCCCcceEEE-EecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCc
Q 039954 346 GTFPEHLPALEKLSLY-VYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGL 424 (578)
Q Consensus 346 ~~~~~~l~~l~~L~l~-~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 424 (578)
+.+|..+..+..|+.. +.++...+.+|..+..+++|++|++++|.....+|..+..+++|++|++++|...+.+|..+.
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 6677666555555432 333333335677777788888888888766667777777788888888888777777777777
Q ss_pred CCCCccEEEeCcCCCCCccccccCCCCCccEEEecC
Q 039954 425 PCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG 460 (578)
Q Consensus 425 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 460 (578)
.+++|+.|++++|...+.+|..+..+++|++|++++
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 778888888888877777777788888888888876
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.1e-37 Score=334.32 Aligned_cols=389 Identities=19% Similarity=0.175 Sum_probs=215.8
Q ss_pred CCeeEEEeeeCCCCc-cccccCccccccccEEeeeccCCCCCCCCCcCchhhh-cccCcccEEEecCCCCCcc-CCc---
Q 039954 34 ENLRHLSYIRGDYDG-VQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKL-LKLQRLRVFSLRGYRIPEL-PDS--- 107 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~i~~l-p~~--- 107 (578)
.+++++.+..+.+.. ......+..+++|++|.+.. |.+....|..+ .++++|++|++++|.++.. |..
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS------NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCS------SEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcC------CccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 578888887776542 11222677888899885543 34455566666 4888888888888888654 333
Q ss_pred ccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccc
Q 039954 108 VGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQT 187 (578)
Q Consensus 108 i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 187 (578)
+.++++|++|++++|.+..... +..+++|++|++++|.....+|. ++.+++|++|++++|.+.+.+|..++.+++|+.
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred hccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence 5677777777777777654332 36677777777777755444554 777777777777777755566666777777777
Q ss_pred cCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCC-
Q 039954 188 LCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALP- 266 (578)
Q Consensus 188 L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 266 (578)
|.............. .+..++ .+.+....- .+.+|.++.. .+++|+.|++++|.+.+.++
T Consensus 252 L~Ls~n~l~~~~~~~---~l~~L~-~L~L~~n~l--------------~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p~ 312 (768)
T 3rgz_A 252 LNISSNQFVGPIPPL---PLKSLQ-YLSLAENKF--------------TGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPP 312 (768)
T ss_dssp EECCSSCCEESCCCC---CCTTCC-EEECCSSEE--------------EESCCCCSCT-TCTTCSEEECCSSEEEECCCG
T ss_pred EECCCCcccCccCcc---ccCCCC-EEECcCCcc--------------CCccCHHHHh-hcCcCCEEECcCCcCCCccch
Confidence 643222111000000 222222 222221100 0012222221 12445555555554443333
Q ss_pred CCCCCCCcceeeecCcCCceecCccccCCCCCCCCC-------------------------CCCeeeeccCCCccccccC
Q 039954 267 SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFP-------------------------CLETLHFEDMQGWEDWIPH 321 (578)
Q Consensus 267 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------~L~~L~l~~~~~~~~~~~~ 321 (578)
.+..+++|++|++++|.....++...++. ++ +|+.|+++++...... +
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~-----l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~-~- 385 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPMDTLLK-----MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-L- 385 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCHHHHTT-----CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC-C-
T ss_pred HHhcCCCccEEECCCCcccCcCCHHHHhc-----CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc-C-
Confidence 34444555555554443222332221111 34 4555555444211100 0
Q ss_pred CCCCcccc--CcccceeecccccccccCCCCCCCCCcceEEEEecCCchh-hHHHhcCCCCCccEEEeecCCCCcccccC
Q 039954 322 GSSQGVER--FPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLE-SIAERLDNNTSLETIRIFNCGNLKTLPSG 398 (578)
Q Consensus 322 ~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~-~i~~~~~~l~~L~~L~l~~~~~~~~~~~~ 398 (578)
..+.. +++|++|++++| .+.+.+|..+.++..|+....+.+.+. .+|..++++++|++|++++|.....+|..
T Consensus 386 ---~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 386 ---PNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp ---TTTTCSTTCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ---hhhhhcccCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence 01222 456666666666 455555555544444433222333333 45666666777777777777655566666
Q ss_pred CCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC
Q 039954 399 LHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG 460 (578)
Q Consensus 399 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 460 (578)
+..+++|++|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|++|++++
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence 66777777777777666666666666677777777777776666777777777777777776
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-35 Score=313.04 Aligned_cols=450 Identities=16% Similarity=0.121 Sum_probs=322.4
Q ss_pred CCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccC-Ccccccc
Q 039954 34 ENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELP-DSVGDLR 112 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~ 112 (578)
.+++++.+..+.+.... ..++.++++|++|.+.+ |.+....|..|.++++|++|++++|.+..++ ..+++++
T Consensus 56 ~~L~~L~Ls~n~l~~i~-~~~~~~l~~L~~L~Ls~------n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTG------NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTT------CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred ccCcEEeCCCCcccccC-HHHhhchhhcCEeECCC------CcccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 57888888887766532 35678999999995543 3445555777889999999999999998885 7899999
Q ss_pred cccEEeccCCCcc--cccccccCcCCccEEecCCCchhHHhhHHHhccccCc----ccccCCCCcccccCCCCCCccccc
Q 039954 113 YLRYLNLSGTEIR--TLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLH----HLKNSNTKSLEEMPVGIGRLTCLQ 186 (578)
Q Consensus 113 ~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~----~L~l~~~~~~~~lp~~i~~l~~L~ 186 (578)
+|++|++++|.+. .+|..++++++|++|++++|......|..++.+++|+ .|++++|. ++.++.......+|+
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLH 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTCEEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC-cceeCcccccCceee
Confidence 9999999999987 5799999999999999999966555566677777766 79999998 566666654444777
Q ss_pred ccCcceeecCCC------------------------------CCccccccccccc-cceeeccc----------cCcccc
Q 039954 187 TLCNFVVGNGSG------------------------------SGLSELKLLMHLR-GALEISKL----------ENVKDV 225 (578)
Q Consensus 187 ~L~~~~~~~~~~------------------------------~~~~~L~~l~~l~-~~l~~~~~----------~~~~~~ 225 (578)
.|.......... .....+..+..+. ..+.+... ..+..+
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L 287 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTC
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCC
Confidence 774222111000 0000001111100 01111010 011111
Q ss_pred chhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCC
Q 039954 226 GNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLE 305 (578)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 305 (578)
... .........+| ++.. +++|+.|++++|.+ +.++.+ .+++|++|++++|....... ...+++|+
T Consensus 288 ~~L-~l~~~~~~~l~-~l~~--~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~--------~~~l~~L~ 353 (606)
T 3vq2_A 288 SAM-SLAGVSIKYLE-DVPK--HFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK--------KVALPSLS 353 (606)
T ss_dssp SEE-EEESCCCCCCC-CCCT--TCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC--------CCCCTTCC
T ss_pred CEE-EecCccchhhh-hccc--cccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchh--------hccCCCCC
Confidence 111 11122334455 4444 88999999999999 677766 99999999999997555442 22489999
Q ss_pred eeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhH-H-HhcCCCCCccE
Q 039954 306 TLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESI-A-ERLDNNTSLET 383 (578)
Q Consensus 306 ~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i-~-~~~~~l~~L~~ 383 (578)
.|+++++....... .+..+..+++|++|++++| .+. .+|..+..+..|+....+.+.+..+ | ..+.++++|++
T Consensus 354 ~L~ls~n~l~~~~~---~~~~~~~~~~L~~L~L~~n-~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 354 YLDLSRNALSFSGC---CSYSDLGTNSLRHLDLSFN-GAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp EEECCSSCEEEEEE---CCHHHHCCSCCCEEECCSC-SEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred EEECcCCccCCCcc---hhhhhccCCcccEeECCCC-ccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 99999875321100 0122678899999999998 676 4666666666665444455555554 3 36889999999
Q ss_pred EEeecCCCCcccccCCCCCCCcceEEeccCCCcc-ccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-C
Q 039954 384 IRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLE-SFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-E 461 (578)
Q Consensus 384 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~ 461 (578)
|++++|......|..+..+++|++|++++|...+ .+|..+..+++|+.|++++|...+..|..+.++++|++|++++ .
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 9999998777778889999999999999987776 3688888999999999999987777788899999999999999 7
Q ss_pred cCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCC
Q 039954 462 LPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPN 534 (578)
Q Consensus 462 l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 534 (578)
+..+.. ..+.++++|+.|++++ +.+..+|.... ..+++|++|+++++|-
T Consensus 509 l~~~~~--------------~~~~~l~~L~~L~l~~--N~l~~~p~~~~--------~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 509 LLFLDS--------------SHYNQLYSLSTLDCSF--NRIETSKGILQ--------HFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CSCEEG--------------GGTTTCTTCCEEECTT--SCCCCEESCGG--------GSCTTCCEEECCSCCC
T ss_pred CCCcCH--------------HHccCCCcCCEEECCC--CcCcccCHhHh--------hhcccCcEEEccCCCc
Confidence 766632 2578899999999999 45778887541 3445799999999653
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-33 Score=304.81 Aligned_cols=488 Identities=15% Similarity=0.077 Sum_probs=306.7
Q ss_pred CCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchh-hhcccCcccEEEecCCCCCccC-Cccccc
Q 039954 34 ENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILP-KLLKLQRLRVFSLRGYRIPELP-DSVGDL 111 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l 111 (578)
.+++.+.+..+.+.... ...+.++++|++|.+.+. . ...+|. .|.++++|++|++++|.++.+| ..|+++
T Consensus 49 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n------~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHN------E-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp TTCSEEECCSSCCCCCC-TTHHHHCTTCCEEECCSS------C-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred CcCcEEECCCCccCccC-HHHHhcccCcCEEECCCC------c-cCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence 46888888877765432 356788999999966442 2 345665 4669999999999999998885 789999
Q ss_pred ccccEEeccCCCcccc-cccccCcCCccEEecCCCchhHHhhHHHh--ccccCcccccCCCCcccccCCCCCCccccccc
Q 039954 112 RYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCWELEKLCADMG--NLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (578)
Q Consensus 112 ~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~l~--~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 188 (578)
++|++|++++|.+..+ |..++++++|++|++++|......+..++ .+++|+.|++++|.+.+..|..++.+.+|+.|
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 9999999999998765 46788999999999999965444455554 45899999999998555556667777776655
Q ss_pred Ccceee------------------------cCC--CCCccccccccc--cccceeeccccCccccchhhhhcCCCCCCCC
Q 039954 189 CNFVVG------------------------NGS--GSGLSELKLLMH--LRGALEISKLENVKDVGNAKEARGYGGTNFP 240 (578)
Q Consensus 189 ~~~~~~------------------------~~~--~~~~~~L~~l~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (578)
...... ... ......+..+.. ++ .+.+.... .....|
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~-~L~Ls~n~--------------l~~~~~ 265 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT-MLDLSYNN--------------LNVVGN 265 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCC-EEECTTSC--------------CCEECT
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCC-EEECCCCC--------------cCccCc
Confidence 221100 000 000011111111 11 12211110 001122
Q ss_pred CCcCCCCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCcee--------cCccccCC----------------
Q 039954 241 AWLGDSSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKR--------LGSEFYGN---------------- 295 (578)
Q Consensus 241 ~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~--------~~~~~~~~---------------- 295 (578)
.++.. +++|+.|++++|.+.+..+ .+..+++|+.|+++++..... +....+..
T Consensus 266 ~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 266 DSFAW--LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp TTTTT--CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred ccccC--cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 33333 6677777777776665544 556666666666654321110 00000000
Q ss_pred ---CCCCCCCCCCeeeeccCCCccccccCCCCCccc--cCcccceeecccccccccCCCCCCCCCcceEEEEecCCchh-
Q 039954 296 ---DAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVE--RFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLE- 369 (578)
Q Consensus 296 ---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~- 369 (578)
.....+++|+.|+++++..-........ +. ..++|+.|++++| .+.+..|..+..+..|+....+.+.+.
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~---f~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNET---FVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTT---TGGGTTSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhh---hcccccCcCceEECCCC-CCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 0011244444444444321000000000 11 1235666666666 455455555555555543333333443
Q ss_pred hHH-HhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCc--cccCCCCcCCCCccEEEeCcCCCCCccccc
Q 039954 370 SIA-ERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNL--ESFPEGGLPCAKLTRLTILDCKRLEALPKG 446 (578)
Q Consensus 370 ~i~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 446 (578)
.+| ..+.++++|++|++++|......+..+..+++|++|++++|... +.+|..+..+++|+.|++++|......+..
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence 344 46778889999999988655555677778888888888887653 456777788888888888888765555556
Q ss_pred cCCCCCccEEEecC-CcCCcccCCC----------CCCCcceeec--------cccccCCCcccEEEEeecCCCccccCC
Q 039954 447 LHNLTSLQELTIGG-ELPSLEEDGL----------PTNLHSMIER--------GRGFHRFSSLRQLAIINCDDDMVSFPP 507 (578)
Q Consensus 447 ~~~l~~L~~L~l~~-~l~~l~~~~~----------~~~l~~l~~~--------~~~~~~l~~L~~L~l~~~~~~~~~~~~ 507 (578)
+.++++|++|++++ .+..++...+ .++|+.+.+. ...+.++++|+.|++++ +.+..++.
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~--N~l~~l~~ 577 (680)
T 1ziw_A 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL--NNLNTLPA 577 (680)
T ss_dssp TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--SCCCCCCT
T ss_pred hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC--CCCCcCCH
Confidence 78888888888888 6666543322 2346666553 23578899999999987 67888887
Q ss_pred CCCCCCCCCCCCCCccccEEEeccCCCcccccc-ccC-CCCCcceEEeccCCCCcc
Q 039954 508 KADDKGSGTALPLPASLTSLMINNFPNLERLSS-SIV-DLQNLTILQLYNCPKLKY 561 (578)
Q Consensus 508 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~-~l~~L~~L~l~~c~~l~~ 561 (578)
..+ ..+++|++|+++++ .++.++. .+. .+++|+++++++|+-...
T Consensus 578 ~~~--------~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 578 SVF--------NNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TTT--------TTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred hHh--------CCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccC
Confidence 653 56789999999995 8888776 455 689999999999654443
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.9e-34 Score=301.81 Aligned_cols=472 Identities=16% Similarity=0.090 Sum_probs=327.3
Q ss_pred CCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCcc-CCcccccc
Q 039954 34 ENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPEL-PDSVGDLR 112 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~ 112 (578)
.+++++.+..+.+.... ..++.++++|++|.+.+ |.+....|..|.++++|++|++++|.++.+ |..++.++
T Consensus 57 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLTA------NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTT------CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred ccceEEECCCCccceeC-hhhccCccccCeeeCCC------CcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 56888888887765432 36788999999995543 445555677778999999999999999887 78899999
Q ss_pred cccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhHHHhccccCc--ccccCCCCcccccCCCCCCcccccccC
Q 039954 113 YLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLH--HLKNSNTKSLEEMPVGIGRLTCLQTLC 189 (578)
Q Consensus 113 ~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~--~L~l~~~~~~~~lp~~i~~l~~L~~L~ 189 (578)
+|++|++++|.+..++ ..+..+++|++|++++|......|..++.+++|+ .|++++|.+ ..++........|+.|.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l-~~~~~~~~~~~~L~~L~ 208 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLN 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC-CEECTTTTTTCEEEEEE
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc-CccChhHhhhccccccc
Confidence 9999999999998763 3455599999999999966556677899999999 899999994 44444444445676663
Q ss_pred cceeecCCCCCccccccccccc-cceeeccccCcc---------------ccchhhhhcCCCCCCC-CCCcCCCCCCcee
Q 039954 190 NFVVGNGSGSGLSELKLLMHLR-GALEISKLENVK---------------DVGNAKEARGYGGTNF-PAWLGDSSFSNLV 252 (578)
Q Consensus 190 ~~~~~~~~~~~~~~L~~l~~l~-~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~ 252 (578)
..... .....+..+..+. ..+....+.... .+...... ......+ +..+.. +++|+
T Consensus 209 l~~~~----~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~-~n~l~~~~~~~~~~--l~~L~ 281 (606)
T 3t6q_A 209 FGGTQ----NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ-KHYFFNISSNTFHC--FSGLQ 281 (606)
T ss_dssp CTTCS----CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT-TCCCSSCCTTTTTT--CTTCS
T ss_pred cCCch----hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee-cCccCccCHHHhcc--ccCCC
Confidence 32211 0000011111000 000111000000 00000000 1111122 223433 89999
Q ss_pred EEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcc
Q 039954 253 TLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPK 332 (578)
Q Consensus 253 ~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (578)
.|++++|.+......+..+++|++|++++|......+..+ ..+++|++|++.++......... .+..+++
T Consensus 282 ~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~~~~~~~~~----~~~~l~~ 351 (606)
T 3t6q_A 282 ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA------SNFPSLTHLSIKGNTKRLELGTG----CLENLEN 351 (606)
T ss_dssp EEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG------GGCTTCSEEECCSCSSCCBCCSS----TTTTCTT
T ss_pred EEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh------hccCcCCEEECCCCCcccccchh----hhhccCc
Confidence 9999999998554588999999999999987433222222 23899999999987543222111 1678999
Q ss_pred cceeecccccccccCC--CCCCCCCcceEEEEecCCchhh-HHHhcCCCCCccEEEeecCCCCcccc-cCCCCCCCcceE
Q 039954 333 LRELHILRCSKLQGTF--PEHLPALEKLSLYVYGCSKLES-IAERLDNNTSLETIRIFNCGNLKTLP-SGLHNLGQLQEI 408 (578)
Q Consensus 333 L~~L~l~~~~~l~~~~--~~~l~~l~~L~l~~~~~~~l~~-i~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L 408 (578)
|++|++++| .+.+.. +..+..+..|+....+.+.+.. .|..+..+++|++|++++|......+ ..+..+++|++|
T Consensus 352 L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 352 LRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp CCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred CCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 999999998 666433 5455555554433333344443 46678899999999999996554444 348899999999
Q ss_pred EeccCCCccccCCCCcCCCCccEEEeCcCCCCCc---cccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccc
Q 039954 409 RIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEA---LPKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGF 484 (578)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~ 484 (578)
++++|......|..+..+++|+.|++++|...+. .+..+..+++|++|++++ .+..++. ..+
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------~~~ 496 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ--------------HAF 496 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT--------------TTT
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh--------------hhh
Confidence 9999888777788888899999999999986552 225688999999999999 7766542 257
Q ss_pred cCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCcccccc-ccCCCCCcceEEeccCC
Q 039954 485 HRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSS-SIVDLQNLTILQLYNCP 557 (578)
Q Consensus 485 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~ 557 (578)
.++++|+.|++++ +.+..++.+. +..+++| +|++++| .++.+++ .+..+++|++|++++|+
T Consensus 497 ~~l~~L~~L~Ls~--N~l~~~~~~~--------l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 497 TSLKMMNHVDLSH--NRLTSSSIEA--------LSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp TTCTTCCEEECCS--SCCCGGGGGG--------GTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ccccCCCEEECCC--CccCcCChhH--------hCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence 7889999999999 3455444333 2567888 9999996 6766654 67888999999999965
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5e-32 Score=297.38 Aligned_cols=477 Identities=17% Similarity=0.125 Sum_probs=247.3
Q ss_pred ccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCC-CCcc-CCcccccccccEEeccCCCcccc-cccccC
Q 039954 57 DIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYR-IPEL-PDSVGDLRYLRYLNLSGTEIRTL-PESVNK 133 (578)
Q Consensus 57 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~~~~ 133 (578)
-.+.+++|.+.. |.+....+.+|.++++|++|++++|. +..+ |..|+++++|++|+|++|.+..+ |..+++
T Consensus 22 lp~~l~~LdLs~------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSF------NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEES------CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEECCC------CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 457788885543 34455556677788999999998885 4566 77888899999999999888766 678888
Q ss_pred cCCccEEecCCCchhHHhhHH--HhccccCcccccCCCCcccccC-CCCCCcccccccCcceeecCCCCCccccccc--c
Q 039954 134 LYNLHSLLLEDCWELEKLCAD--MGNLAKLHHLKNSNTKSLEEMP-VGIGRLTCLQTLCNFVVGNGSGSGLSELKLL--M 208 (578)
Q Consensus 134 l~~L~~L~l~~~~~~~~lp~~--l~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l--~ 208 (578)
+++|++|++++|.....+|.. ++.+++|++|++++|.+.+..+ ..++++++|+.|...... ........+..+ .
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGK 174 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHC
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCC
Confidence 999999999988655545554 7888899999999888544333 457888888887422211 111122222222 2
Q ss_pred ccccceeeccccCccccchhhhhcCCCCCCCCCCcCC----CCCCceeEEEeccCCCCCCCC----CCCCCCCcceeeec
Q 039954 209 HLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGD----SSFSNLVTLKFKNCDMCTALP----SVGQLPSLTHLAVC 280 (578)
Q Consensus 209 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~----~l~~l~~L~~L~l~ 280 (578)
+++ .+.+....- .+ ..|..+.. .....|+.|++++|.+....+ ......+++.+.+.
T Consensus 175 ~L~-~L~L~~n~l-------------~~-~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 175 TLS-FFSLAANSL-------------YS-RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp SSC-CCEECCSBS-------------CC-CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred ccc-eEECCCCcc-------------cc-ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 222 222211100 00 01111110 001136666666665554333 11223445555554
Q ss_pred CcCCceecCccccCC-----CCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCCCC
Q 039954 281 GMSRVKRLGSEFYGN-----DAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPAL 355 (578)
Q Consensus 281 ~~~~~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l 355 (578)
.+............. ......++++.|+++++... ... +..+..+++|+.|++++| .+.+..|..+..+
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~----~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l 313 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLN----SRVFETLKDLKVLNLAYN-KINKIADEAFYGL 313 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EEC----SCCSSSCCCCCEEEEESC-CCCEECTTTTTTC
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCccc-ccC----hhhhhcCCCCCEEECCCC-cCCCCChHHhcCC
Confidence 221111000000000 00111345666666554321 111 111455666666666665 4544444333333
Q ss_pred cceEEEEecCCchhhH-HHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEe
Q 039954 356 EKLSLYVYGCSKLESI-AERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTI 434 (578)
Q Consensus 356 ~~L~l~~~~~~~l~~i-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 434 (578)
..|+....+.+.++.+ |..+.++++|++|++++|......+..+..+++|++|++++|... .++ .+++|+.|++
T Consensus 314 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~----~~~~L~~L~l 388 (844)
T 3j0a_A 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIH----FIPSIPDIFL 388 (844)
T ss_dssp SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCS----SCCSCSEEEE
T ss_pred CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-ccc----CCCCcchhcc
Confidence 3332111122223222 334555556666666655332222334555566666666554322 222 1455555555
Q ss_pred CcCCCCCccccccCCCCCccEEEecC-CcCCcccC---CCCCCCcceeecccc---------ccCCCcccEEEEeecCCC
Q 039954 435 LDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEED---GLPTNLHSMIERGRG---------FHRFSSLRQLAIINCDDD 501 (578)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~---~~~~~l~~l~~~~~~---------~~~l~~L~~L~l~~~~~~ 501 (578)
++|+. +.+|.. ..+++.+++++ ++..++.. .-.++|+.+.+..+. +..+++|+.|++++ +.
T Consensus 389 ~~N~l-~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~--N~ 462 (844)
T 3j0a_A 389 SGNKL-VTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE--NM 462 (844)
T ss_dssp ESCCC-CCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEES--CC
T ss_pred CCCCc-cccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCC--Cc
Confidence 55543 233321 23344444444 33332211 012233444332221 22345566666665 23
Q ss_pred ccccCCCCCCCCCCCCCCCCccccEEEeccCCCcccccc-ccCCCCCcceEEeccCCCCcccCCCCCCCcccceEec
Q 039954 502 MVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSS-SIVDLQNLTILQLYNCPKLKYFPEKGLPSSLLELDIN 577 (578)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~l~l~ 577 (578)
+..++.. ......+..+++|++|++++| .++.++. .+.++++|++|++++ |+++.+++..++++|+.|+++
T Consensus 463 l~~~~~~---~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~L~~L~Ls 534 (844)
T 3j0a_A 463 LQLAWET---ELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNS-NRLTVLSHNDLPANLEILDIS 534 (844)
T ss_dssp CSSSCCS---CCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEES-CCCSSCCCCCCCSCCCEEEEE
T ss_pred ccccccc---ccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCC-CCCCccChhhhhccccEEECC
Confidence 3222211 011122345678888888884 6777665 577888888888888 688888887777888888775
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=296.30 Aligned_cols=473 Identities=18% Similarity=0.155 Sum_probs=303.4
Q ss_pred CCCCCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCcc-CCccc
Q 039954 31 SFSENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPEL-PDSVG 109 (578)
Q Consensus 31 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~ 109 (578)
.++..++++.+..+.+.... ..++.++++|++|.+.+ +.+....+..|.++++|++|++++|.++.+ |..|+
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~------n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSR------CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SSCSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTT------CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CccccccEEEccCCccCccC-hhHhhCCCCceEEECCC------CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 45678999999888876543 35788999999996544 233333344566999999999999999888 47899
Q ss_pred ccccccEEeccCCCcccccc-cccCcCCccEEecCCCchhH-HhhHHHhccccCcccccCCCCcccccCCCCCCcccc--
Q 039954 110 DLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCWELE-KLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCL-- 185 (578)
Q Consensus 110 ~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L-- 185 (578)
++++|++|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|.+....|..++.+++|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 99999999999999998875 68999999999999996544 478899999999999999999555555667777777
Q ss_pred --cccCcceeecCCCCCccccccccccccceeecccc-Cccccchhhh-----------hcCCCC----CCCCCC-cCCC
Q 039954 186 --QTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLE-NVKDVGNAKE-----------ARGYGG----TNFPAW-LGDS 246 (578)
Q Consensus 186 --~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~-~~~~~~~~~~-----------~~~~~~----~~~~~~-~~~~ 246 (578)
..|....... .......+... .++ .+.+.... ....+..... ...+.. ..++.+ +...
T Consensus 178 ~~~~L~l~~n~l-~~~~~~~~~~~-~L~-~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 178 LNLSLDLSLNPM-NFIQPGAFKEI-RLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp CCCEEECTTCCC-CEECTTTTTTC-EEE-EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred hhhhcccCCCCc-eecCHHHhccC-cce-eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 3332111100 00001111111 122 22222110 0000000000 000000 000000 0000
Q ss_pred CCCceeEEEeccC-CCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCC
Q 039954 247 SFSNLVTLKFKNC-DMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSS 324 (578)
Q Consensus 247 ~~~~L~~L~l~~~-~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 324 (578)
.--.++.+++.++ .+.+..+ .+..+++|++|+++++. ++.++..+. .+ +|++|++.++... ..+
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~------~~-~L~~L~l~~n~~~------~l~ 320 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSY------NF-GWQHLELVNCKFG------QFP 320 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCCS------CC-CCSEEEEESCBCS------SCC
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhhc------cC-CccEEeeccCccc------ccC
Confidence 0013455555555 3333333 56667778888877764 333332221 14 7777777766422 111
Q ss_pred CccccCcccceeecccccccccCCC-CCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCC
Q 039954 325 QGVERFPKLRELHILRCSKLQGTFP-EHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLG 403 (578)
Q Consensus 325 ~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 403 (578)
...+++|++|++.+| .+.+..+ ..+++++.|++...........+..+.++++|++|++++|. +..++..+..++
T Consensus 321 --~~~l~~L~~L~l~~n-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~ 396 (570)
T 2z63_A 321 --TLKLKSLKRLTFTSN-KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLE 396 (570)
T ss_dssp --BCBCSSCCEEEEESC-BSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCT
T ss_pred --cccccccCEEeCcCC-ccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccC
Confidence 245777888888777 3443333 34556666554322222222235567788899999999985 445555588899
Q ss_pred CcceEEeccCCCccccC-CCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcC--CcccCCCCCCCcceee
Q 039954 404 QLQEIRIQKCRNLESFP-EGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELP--SLEEDGLPTNLHSMIE 479 (578)
Q Consensus 404 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~--~l~~~~~~~~l~~l~~ 479 (578)
+|++|++++|......+ ..+..+++|+.|++++|...+..|..+.++++|++|++++ .+. .++
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p------------- 463 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------- 463 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-------------
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch-------------
Confidence 99999999876655544 3567789999999999987777788888999999999998 553 232
Q ss_pred ccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCcccccc-ccCCCCCcceEEeccCC
Q 039954 480 RGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSS-SIVDLQNLTILQLYNCP 557 (578)
Q Consensus 480 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~ 557 (578)
..+..+++|+.|++++ | .+..++... +..+++|++|++++| .++.++. .+..+++|++|++++|+
T Consensus 464 --~~~~~l~~L~~L~l~~-n-~l~~~~~~~--------~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 464 --DIFTELRNLTFLDLSQ-C-QLEQLSPTA--------FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp --SCCTTCTTCCEEECTT-S-CCCEECTTT--------TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --hhhhcccCCCEEECCC-C-ccccCChhh--------hhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 2467889999999998 3 455553332 256789999999996 6777765 67889999999999854
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.3e-33 Score=287.86 Aligned_cols=429 Identities=17% Similarity=0.151 Sum_probs=284.1
Q ss_pred ccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCcc-CCcccccccccEEeccCCCcccccccccCcCCc
Q 039954 59 QHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNL 137 (578)
Q Consensus 59 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L 137 (578)
+++++|.+.+ |.+....|..|.++++|++|++++|.++.+ |..|+.+++|++|++++|.++.+|.. .+++|
T Consensus 21 ~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQ------NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCS------SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred ccccEEECCC------CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence 6777774433 333444445666888888888888888766 67788888888888888888878766 78888
Q ss_pred cEEecCCCchhH-HhhHHHhccccCcccccCCCCcccccCCCCCCcccc--cccCcceeecCCCCCccccccccccccce
Q 039954 138 HSLLLEDCWELE-KLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCL--QTLCNFVVGNGSGSGLSELKLLMHLRGAL 214 (578)
Q Consensus 138 ~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L--~~L~~~~~~~~~~~~~~~L~~l~~l~~~l 214 (578)
++|++++|.... .+|..++.+++|++|++++|.+.. ..++.+++| +.|.....
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n--------------------- 148 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLG--------------------- 148 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEEC---------------------
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecc---------------------
Confidence 888888885544 456778888888888888877433 234445555 54421111
Q ss_pred eeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCC--CCCCCCCcceeeecCcC-------Cc
Q 039954 215 EISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALP--SVGQLPSLTHLAVCGMS-------RV 285 (578)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~-------~~ 285 (578)
.+. .....|.++..... +...+++++|.+.+.++ .+..+++|+.+++++|. ..
T Consensus 149 ---~l~--------------~~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 149 ---ETY--------------GEKEDPEGLQDFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp ---TTT--------------TSSCCTTTTTTCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred ---ccc--------------cccccccccccccc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence 000 01112333222111 34456677777766554 56678888888888764 11
Q ss_pred eecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCC-----CCCcceEE
Q 039954 286 KRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHL-----PALEKLSL 360 (578)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-----~~l~~L~l 360 (578)
..++ . ...+++|+.|++.++..-..... .... ....++|++|++++| .+.+.+|..+ ..++.|+.
T Consensus 211 ~~~~-~------l~~l~~L~~L~l~~~~l~~~~~~-~~~~-~~~~~~L~~L~l~~n-~l~~~~p~~~~~~~~~~l~~L~~ 280 (520)
T 2z7x_B 211 SILA-K------LQTNPKLSNLTLNNIETTWNSFI-RILQ-LVWHTTVWYFSISNV-KLQGQLDFRDFDYSGTSLKALSI 280 (520)
T ss_dssp HHHH-G------GGGCTTCCEEEEEEEEEEHHHHH-HHHH-HHHTSSCSEEEEEEE-EEESCCCCCCCCCCSCCCCEEEE
T ss_pred cchh-h------hccccchhhccccccccCHHHHH-HHHH-HhhhCcccEEEeecc-cccCccccchhhcccccCceeEe
Confidence 1111 1 22377888888876532111000 0000 112458999999998 7777888777 77777765
Q ss_pred EEecCCchhhHH-HhcCCC---CCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCc
Q 039954 361 YVYGCSKLESIA-ERLDNN---TSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILD 436 (578)
Q Consensus 361 ~~~~~~~l~~i~-~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 436 (578)
.....+.+ .+| ..+..+ .+|+.|++++|... ..+ ....+++|++|++++|...+.+|..+..+++|+.|++++
T Consensus 281 l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 357 (520)
T 2z7x_B 281 HQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMV-HML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357 (520)
T ss_dssp EEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCC-CCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred ccccccce-ecchhhhhcccccCceeEEEcCCCccc-ccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence 44444444 333 222222 57999999998643 332 125889999999999888877888888999999999999
Q ss_pred CCCCC--ccccccCCCCCccEEEecC-CcCC-cccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCC
Q 039954 437 CKRLE--ALPKGLHNLTSLQELTIGG-ELPS-LEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDK 512 (578)
Q Consensus 437 ~~~~~--~~~~~~~~l~~L~~L~l~~-~l~~-l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 512 (578)
|...+ .+|..+..+++|++|++++ .+.. ++.. .+..+++|+.|++++ +.....++.
T Consensus 358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~--------------~~~~l~~L~~L~Ls~-N~l~~~~~~----- 417 (520)
T 2z7x_B 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG--------------DCSWTKSLLSLNMSS-NILTDTIFR----- 417 (520)
T ss_dssp SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC--------------SCCCCTTCCEEECCS-SCCCGGGGG-----
T ss_pred CccCccccchHHHhhCCCCCEEECCCCcCCcccccc--------------hhccCccCCEEECcC-CCCCcchhh-----
Confidence 98655 5667789999999999999 7766 6532 356678999999988 333333433
Q ss_pred CCCCCCCCCccccEEEeccCCCccccccccCCCCCcceEEeccCCCCcccCCCCC--CCcccceEecC
Q 039954 513 GSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQLYNCPKLKYFPEKGL--PSSLLELDINR 578 (578)
Q Consensus 513 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~l~l~~ 578 (578)
..+++|++|++++| +++.+|..+..+++|++|++++ ++++.+|...+ .++|+.|++.+
T Consensus 418 ------~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 418 ------CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp ------SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ------hhcccCCEEECCCC-cccccchhhhcCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcC
Confidence 23378999999995 7888888677889999999988 58888887533 34888888763
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-34 Score=305.20 Aligned_cols=364 Identities=16% Similarity=0.179 Sum_probs=246.2
Q ss_pred CCcccccccccCcCCccEEecCCCchhHH-----------------hhHHHh--ccccCcccccCCCCcccccCCCCCCc
Q 039954 122 TEIRTLPESVNKLYNLHSLLLEDCWELEK-----------------LCADMG--NLAKLHHLKNSNTKSLEEMPVGIGRL 182 (578)
Q Consensus 122 ~~i~~lp~~~~~l~~L~~L~l~~~~~~~~-----------------lp~~l~--~l~~L~~L~l~~~~~~~~lp~~i~~l 182 (578)
|.++.+|..++++++|++|++++|..... +|..++ ++++|++|++++|.+.+.+|..++++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 45656777788888888888888754443 777777 88888888888887777777778877
Q ss_pred ccccccCcceeecCCC-CCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCC
Q 039954 183 TCLQTLCNFVVGNGSG-SGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDM 261 (578)
Q Consensus 183 ~~L~~L~~~~~~~~~~-~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 261 (578)
++|+.|.........+ ..+..+..+... ..+++|+.|++++|.+
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~-----------------------------------~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADA-----------------------------------PVGEKIQIIYIGYNNL 317 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHS-----------------------------------GGGGTCCEEECCSSCC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhcc-----------------------------------ccCCCCCEEECCCCcC
Confidence 7777773221110000 000111111000 0146788888888887
Q ss_pred CCCCC---CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcc-cceee
Q 039954 262 CTALP---SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPK-LRELH 337 (578)
Q Consensus 262 ~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~ 337 (578)
. .+| .++.+++|++|++++|.....++ .+ ..+++|+.|+++++... ..+..+..+++ |++|+
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~------~~l~~L~~L~L~~N~l~------~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF------GSEIKLASLNLAYNQIT------EIPANFCGFTEQVENLS 383 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC------EEEEEESEEECCSSEEE------ECCTTSEEECTTCCEEE
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hh------CCCCCCCEEECCCCccc------cccHhhhhhcccCcEEE
Confidence 7 444 47788888888888776433444 22 22677888887776421 22233778888 99999
Q ss_pred cccccccccCCCCCCCCCc--ceEEEEecCCchh-hHHHhcC-------CCCCccEEEeecCCCCcccccC-CCCCCCcc
Q 039954 338 ILRCSKLQGTFPEHLPALE--KLSLYVYGCSKLE-SIAERLD-------NNTSLETIRIFNCGNLKTLPSG-LHNLGQLQ 406 (578)
Q Consensus 338 l~~~~~l~~~~~~~l~~l~--~L~l~~~~~~~l~-~i~~~~~-------~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~ 406 (578)
+++| .++ .+|..+.... .|+....+.+.+. .+|..+. .+++|++|++++|.. +.+|.. +..+++|+
T Consensus 384 Ls~N-~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 384 FAHN-KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLS 460 (636)
T ss_dssp CCSS-CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCS
T ss_pred ccCC-cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCC
Confidence 9998 687 7887666543 5553333444443 4666666 778999999999854 466554 34689999
Q ss_pred eEEeccCCCccccCCCCcC--------CCCccEEEeCcCCCCCccccccC--CCCCccEEEecC-CcCCcccCCCCCCCc
Q 039954 407 EIRIQKCRNLESFPEGGLP--------CAKLTRLTILDCKRLEALPKGLH--NLTSLQELTIGG-ELPSLEEDGLPTNLH 475 (578)
Q Consensus 407 ~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~-~l~~l~~~~~~~~l~ 475 (578)
+|++++|... .+|..... +++|+.|++++|... .+|..+. .+++|++|++++ .+..+|.
T Consensus 461 ~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~-------- 530 (636)
T 4eco_A 461 SINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPT-------- 530 (636)
T ss_dssp EEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCC--------
T ss_pred EEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcCh--------
Confidence 9999997666 66664332 238999999998754 7888886 899999999999 7776542
Q ss_pred ceeeccccccCCCcccEEEEeec-----CCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccccCCCCCcce
Q 039954 476 SMIERGRGFHRFSSLRQLAIINC-----DDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTI 550 (578)
Q Consensus 476 ~l~~~~~~~~~l~~L~~L~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~ 550 (578)
.+..+++|+.|++++| +.....+|... ..+++|++|++++| .++.+|..+. ++|++
T Consensus 531 -------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l---------~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~ 591 (636)
T 4eco_A 531 -------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI---------TLCPSLTQLQIGSN-DIRKVNEKIT--PNISV 591 (636)
T ss_dssp -------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG---------GGCSSCCEEECCSS-CCCBCCSCCC--TTCCE
T ss_pred -------hhhcCCCCCEEECCCCcccccCcccccChHHH---------hcCCCCCEEECCCC-cCCccCHhHh--CcCCE
Confidence 4677899999999651 22244555443 56789999999995 6688986544 89999
Q ss_pred EEeccCCCCcccCCCCC
Q 039954 551 LQLYNCPKLKYFPEKGL 567 (578)
Q Consensus 551 L~l~~c~~l~~l~~~~~ 567 (578)
|++++ |.+..+...++
T Consensus 592 L~Ls~-N~l~~~~~~~~ 607 (636)
T 4eco_A 592 LDIKD-NPNISIDLSYV 607 (636)
T ss_dssp EECCS-CTTCEEECTTT
T ss_pred EECcC-CCCccccHHhc
Confidence 99999 56776655443
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=300.21 Aligned_cols=493 Identities=19% Similarity=0.123 Sum_probs=295.1
Q ss_pred CCCCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCc-hhhhcccCcccEEEecCCCCCcc-CCccc
Q 039954 32 FSENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSI-LPKLLKLQRLRVFSLRGYRIPEL-PDSVG 109 (578)
Q Consensus 32 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~-~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~ 109 (578)
.+.+++++.+..+.+.... ...+.++++|++|.+.+ +.....+ |..|.++++|++|+|++|.+..+ |..|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~------n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGS------QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECT------TCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCC------CCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 7789999999988876543 46788999999996654 3345566 56667999999999999999877 88999
Q ss_pred ccccccEEeccCCCccc-cccc--ccCcCCccEEecCCCchhHHh-hHHHhccccCcccccCCCCcccccCCCCCCc--c
Q 039954 110 DLRYLRYLNLSGTEIRT-LPES--VNKLYNLHSLLLEDCWELEKL-CADMGNLAKLHHLKNSNTKSLEEMPVGIGRL--T 183 (578)
Q Consensus 110 ~l~~L~~L~L~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l--~ 183 (578)
++++|++|++++|.+.. +|.. +.++++|++|++++|...... +..++++++|++|++++|.+....+..++.+ +
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 99999999999999875 5554 899999999999999654433 3568999999999999998666666677766 6
Q ss_pred cccccCcceeecCCCCCccccccccc------cccceeeccccCcc----ccchhh--------------hhcCCCCCCC
Q 039954 184 CLQTLCNFVVGNGSGSGLSELKLLMH------LRGALEISKLENVK----DVGNAK--------------EARGYGGTNF 239 (578)
Q Consensus 184 ~L~~L~~~~~~~~~~~~~~~L~~l~~------l~~~l~~~~~~~~~----~~~~~~--------------~~~~~~~~~~ 239 (578)
+|+.|......... .....+..+.. ++ .+.+....-.. ...... ....+....+
T Consensus 175 ~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 175 TLSFFSLAANSLYS-RVSVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp SSCCCEECCSBSCC-CCCCCCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred ccceEECCCCcccc-ccccchhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 67766432221111 11111111111 21 22222110000 000000 0000000000
Q ss_pred ----CCCcCCCCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCC
Q 039954 240 ----PAWLGDSSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQG 314 (578)
Q Consensus 240 ----~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 314 (578)
+..+.....++|+.|++++|.+.+..+ .+..+++|+.|++++|......+..+ ..+++|+.|+++++..
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~------~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF------YGLDNLQVLNLSYNLL 326 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT------TTCSSCCEEEEESCCC
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh------cCCCCCCEEECCCCCC
Confidence 111222224688999999888876655 67888899999998886433323222 2378888888887742
Q ss_pred ccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcc
Q 039954 315 WEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKT 394 (578)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~ 394 (578)
.... +..+..+++|++|++++| .+.+..+..+..+..|+....+.+.++.+ ..+++|+.|++++|. +..
T Consensus 327 -~~~~----~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i----~~~~~L~~L~l~~N~-l~~ 395 (844)
T 3j0a_A 327 -GELY----SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTI----HFIPSIPDIFLSGNK-LVT 395 (844)
T ss_dssp -SCCC----SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSCCC----SSCCSCSEEEEESCC-CCC
T ss_pred -CccC----HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCCCCcc----cCCCCcchhccCCCC-ccc
Confidence 2111 122677888899999888 66644443443333333222222333332 236678888888774 345
Q ss_pred cccCCCCCCCcceEEeccCCCccccCC--CCcCCCCccEEEeCcCCCCCcccc-ccCCCCCccEEEecC-CcCCcccCCC
Q 039954 395 LPSGLHNLGQLQEIRIQKCRNLESFPE--GGLPCAKLTRLTILDCKRLEALPK-GLHNLTSLQELTIGG-ELPSLEEDGL 470 (578)
Q Consensus 395 ~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~-~l~~l~~~~~ 470 (578)
+|.. ..+++.|++++|.... ++. .+..+++|+.|++++|......+. .+..+++|++|++++ .+...+..+.
T Consensus 396 l~~~---~~~l~~L~ls~N~l~~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~ 471 (844)
T 3j0a_A 396 LPKI---NLTANLIHLSENRLEN-LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471 (844)
T ss_dssp CCCC---CTTCCEEECCSCCCCS-STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC
T ss_pred cccc---ccccceeecccCcccc-CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccccc
Confidence 5442 4566777777654332 221 123567777777777764432221 245567777777777 5544432222
Q ss_pred CCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccccCCCCCcce
Q 039954 471 PTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTI 550 (578)
Q Consensus 471 ~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~ 550 (578)
. +..+.++++|+.|++++ +.+..++... +..+++|++|+++++ +++.++..... ++|+.
T Consensus 472 ~---------~~~~~~l~~L~~L~Ls~--N~l~~~~~~~--------~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~~L~~ 530 (844)
T 3j0a_A 472 C---------WDVFEGLSHLQVLYLNH--NYLNSLPPGV--------FSHLTALRGLSLNSN-RLTVLSHNDLP-ANLEI 530 (844)
T ss_dssp C---------SSCSSCBCCEECCCCCH--HHHTTCCTTS--------SSSCCSCSEEEEESC-CCSSCCCCCCC-SCCCE
T ss_pred c---------hhhhcCcccccEEECCC--CcccccChhH--------ccchhhhheeECCCC-CCCccChhhhh-ccccE
Confidence 1 11355566666666666 3455555433 245566677777663 66666542111 56677
Q ss_pred EEeccCCCCcccCCCCCCCcccceEec
Q 039954 551 LQLYNCPKLKYFPEKGLPSSLLELDIN 577 (578)
Q Consensus 551 L~l~~c~~l~~l~~~~~~~sL~~l~l~ 577 (578)
|++++ |+++.+++..+ .+|+.|++.
T Consensus 531 L~Ls~-N~l~~~~~~~~-~~L~~l~l~ 555 (844)
T 3j0a_A 531 LDISR-NQLLAPNPDVF-VSLSVLDIT 555 (844)
T ss_dssp EEEEE-ECCCCCCSCCC-SSCCEEEEE
T ss_pred EECCC-CcCCCCChhHh-CCcCEEEec
Confidence 77766 56666555444 356666554
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.3e-33 Score=295.75 Aligned_cols=374 Identities=14% Similarity=0.148 Sum_probs=244.1
Q ss_pred chhhhcccCcccEEEecCCCCCc------------------cCCccc--ccccccEEeccCCCc-ccccccccCcCCccE
Q 039954 81 ILPKLLKLQRLRVFSLRGYRIPE------------------LPDSVG--DLRYLRYLNLSGTEI-RTLPESVNKLYNLHS 139 (578)
Q Consensus 81 ~~~~~~~l~~Lr~L~L~~~~i~~------------------lp~~i~--~l~~L~~L~L~~~~i-~~lp~~~~~l~~L~~ 139 (578)
+|..+.++++|++|++++|.++. +|+.++ ++++|++|++++|.+ +.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 77777788888888888888876 888888 888888888888874 577888888888888
Q ss_pred EecCCCc-hhH-HhhHHHhcc------ccCcccccCCCCcccccCC--CCCCcccccccCcceeecCCCCCccccccccc
Q 039954 140 LLLEDCW-ELE-KLCADMGNL------AKLHHLKNSNTKSLEEMPV--GIGRLTCLQTLCNFVVGNGSGSGLSELKLLMH 209 (578)
Q Consensus 140 L~l~~~~-~~~-~lp~~l~~l------~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~ 209 (578)
|++++|. ... .+|..++.+ ++|++|++++|. ++.+|. .++++++|+.|...... +.
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~------l~------- 343 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ------LE------- 343 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC------CE-------
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc------Cc-------
Confidence 8888886 444 688878776 888888888888 447777 67777777666211110 00
Q ss_pred cccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCC-cceeeecCcCCceec
Q 039954 210 LRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPS-LTHLAVCGMSRVKRL 288 (578)
Q Consensus 210 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~ 288 (578)
+.+| .+. .+++|+.|++++|.+......+..+++ |++|++++|.. +.+
T Consensus 344 ---------------------------g~ip-~~~--~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l-~~l 392 (636)
T 4eco_A 344 ---------------------------GKLP-AFG--SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYI 392 (636)
T ss_dssp ---------------------------EECC-CCE--EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC-SSC
T ss_pred ---------------------------cchh-hhC--CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC-ccc
Confidence 0112 111 155677777777766622225666666 77777766652 222
Q ss_pred CccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCC-------CCcceEEE
Q 039954 289 GSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLP-------ALEKLSLY 361 (578)
Q Consensus 289 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-------~l~~L~l~ 361 (578)
+..+. ...+++|++|++++| .+.+..|..++ .+..|+..
T Consensus 393 p~~~~---------------------------------~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 393 PNIFD---------------------------------AKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp CSCCC---------------------------------TTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred chhhh---------------------------------hcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEE
Confidence 22110 111235555555555 45444444444 33333333
Q ss_pred EecCCchhhHHHh-cCCCCCccEEEeecCCCCcccccCCCC-C-------CCcceEEeccCCCccccCCCCc--CCCCcc
Q 039954 362 VYGCSKLESIAER-LDNNTSLETIRIFNCGNLKTLPSGLHN-L-------GQLQEIRIQKCRNLESFPEGGL--PCAKLT 430 (578)
Q Consensus 362 ~~~~~~l~~i~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~-l-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~ 430 (578)
..+.+.++.+|.. +..+++|++|++++|... .+|..... . ++|++|++++|... .+|..+. .+++|+
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 516 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLV 516 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCC
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcC
Confidence 3333334444443 345789999999998654 67654432 2 28999999997655 7887766 899999
Q ss_pred EEEeCcCCCCCccccccCCCCCccEEEecC-C-cCCcc-cCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCC
Q 039954 431 RLTILDCKRLEALPKGLHNLTSLQELTIGG-E-LPSLE-EDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPP 507 (578)
Q Consensus 431 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~-l~~l~-~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 507 (578)
.|++++|...+ +|..+..+++|++|++++ + +..-. ... .+..+..+++|++|++++ +.+..+|.
T Consensus 517 ~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~----------~p~~l~~l~~L~~L~Ls~--N~l~~ip~ 583 (636)
T 4eco_A 517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE----------WPEGITLCPSLTQLQIGS--NDIRKVNE 583 (636)
T ss_dssp EEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC----------CCTTGGGCSSCCEEECCS--SCCCBCCS
T ss_pred EEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc----------ChHHHhcCCCCCEEECCC--CcCCccCH
Confidence 99999998655 899999999999999965 2 00000 001 123577899999999999 45588886
Q ss_pred CCCCCCCCCCCCCCccccEEEeccCCCccccc------cccC---CCCCcceEEeccCCCCc
Q 039954 508 KADDKGSGTALPLPASLTSLMINNFPNLERLS------SSIV---DLQNLTILQLYNCPKLK 560 (578)
Q Consensus 508 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~------~~~~---~l~~L~~L~l~~c~~l~ 560 (578)
.. .++|++|++++|+ +..+. .... .+...+..++.+|+.+.
T Consensus 584 ~~-----------~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 584 KI-----------TPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CC-----------CTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred hH-----------hCcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 43 3799999999974 43332 1222 23344666888888764
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.9e-33 Score=292.95 Aligned_cols=453 Identities=16% Similarity=0.182 Sum_probs=249.7
Q ss_pred CCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCC-cccccc
Q 039954 34 ENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPD-SVGDLR 112 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~ 112 (578)
+.++++.+..+.+.... ...+.++++|++|.+.+ |.+....|..|.++++|++|++++|.++.++. .++.++
T Consensus 26 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKS------SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTT------SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcCCccCccC-hhhhhcCCcccEEECCC------CCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 45566665555544321 23455555666663332 22233333444466666666666666655532 355666
Q ss_pred cccEEeccCCCccc--ccccccCcCCccEEecCCCchhHHhh-HHHhccccCcccccCCCCcccccCCCCCCcccccccC
Q 039954 113 YLRYLNLSGTEIRT--LPESVNKLYNLHSLLLEDCWELEKLC-ADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLC 189 (578)
Q Consensus 113 ~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 189 (578)
+|++|++++|.++. +|..++++++|++|++++|.....+| ..++.+++|++|++++|.+.+..|..++.+++|+.|.
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 66666666666553 24455566666666666554334343 3455566666666666654444555555555555552
Q ss_pred cceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCC----
Q 039954 190 NFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTAL---- 265 (578)
Q Consensus 190 ~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---- 265 (578)
.. ..... .+|.++. ..+++|+.|++++|.+.+..
T Consensus 179 l~------------------------~n~~~-----------------~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~ 216 (549)
T 2z81_A 179 LH------------------------LSESA-----------------FLLEIFA-DILSSVRYLELRDTNLARFQFSPL 216 (549)
T ss_dssp EE------------------------CSBST-----------------THHHHHH-HSTTTBSEEEEESCBCTTCCCCCC
T ss_pred cc------------------------cCccc-----------------ccchhhH-hhcccccEEEccCCcccccccccc
Confidence 11 11100 0111110 01677888888888776631
Q ss_pred CCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCcc--ccccCCCCCccccCcccceeecccccc
Q 039954 266 PSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWE--DWIPHGSSQGVERFPKLRELHILRCSK 343 (578)
Q Consensus 266 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~ 343 (578)
+....+++|+.|+++++.........+.. ....+++++.+++.++.... .+. ......+..+++|+.|++.++ .
T Consensus 217 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~-~ 292 (549)
T 2z81_A 217 PVDEVSSPMKKLAFRGSVLTDESFNELLK--LLRYILELSEVEFDDCTLNGLGDFN-PSESDVVSELGKVETVTIRRL-H 292 (549)
T ss_dssp SSCCCCCCCCEEEEESCEEEHHHHHHHHG--GGGGCTTCCEEEEESCEEECCSCCC-CCTTTCCCCCTTCCEEEEESC-B
T ss_pred chhhhhhcccceeccccccchhHHHHHHH--Hhhhhcccccccccccccccccccc-ccchhhhhhhccccccccccc-c
Confidence 23455777888888776422111110000 01225677777777654211 110 001112455677777777765 2
Q ss_pred cccC-----C---CCCCCCCcceEEEEecCCchhhHHHhc-CCCCCccEEEeecCCCCcccc---cCCCCCCCcceEEec
Q 039954 344 LQGT-----F---PEHLPALEKLSLYVYGCSKLESIAERL-DNNTSLETIRIFNCGNLKTLP---SGLHNLGQLQEIRIQ 411 (578)
Q Consensus 344 l~~~-----~---~~~l~~l~~L~l~~~~~~~l~~i~~~~-~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~ 411 (578)
+... + ....++++.|.+.. +.++.+|..+ ..+++|++|++++|.....+| ..+..+++|++|+++
T Consensus 293 i~~~~~~~~l~~~~~~~~~L~~L~l~~---n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls 369 (549)
T 2z81_A 293 IPQFYLFYDLSTVYSLLEKVKRITVEN---SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369 (549)
T ss_dssp CSCGGGSCCCCHHHHHSTTCCEEEEES---SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECT
T ss_pred cchhhhcccchhhhhhcccceEEEecc---CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEcc
Confidence 2210 0 01124555544432 2344555544 457788888888876554442 345677888888888
Q ss_pred cCCCccccC--CCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeecccccc---
Q 039954 412 KCRNLESFP--EGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFH--- 485 (578)
Q Consensus 412 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~--- 485 (578)
+|...+..+ ..+..+++|+.|++++|. ++.+|..+..+++|++|++++ .+..++. .++++|+.+.+..+.+.
T Consensus 370 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~Ls~N~l~~~~ 447 (549)
T 2z81_A 370 QNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFS 447 (549)
T ss_dssp TSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCSCCCT-TSCTTCSEEECCSSCCSCCC
T ss_pred CCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCcccccc-hhcCCceEEECCCCChhhhc
Confidence 865543211 234567788888888875 446777777788888888888 6666643 23455666665444333
Q ss_pred -CCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCcccccc-ccCCCCCcceEEeccCC
Q 039954 486 -RFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSS-SIVDLQNLTILQLYNCP 557 (578)
Q Consensus 486 -~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~ 557 (578)
.+++|++|++++ +.+..+|.. ..+++|++|++++| .++.++. .+..+++|+.|++++|+
T Consensus 448 ~~l~~L~~L~Ls~--N~l~~ip~~----------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 448 LFLPRLQELYISR--NKLKTLPDA----------SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCTTCCEEECCS--SCCSSCCCG----------GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ccCChhcEEECCC--CccCcCCCc----------ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 567788888877 355666652 24667888888874 6666554 56777788888887754
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-32 Score=289.03 Aligned_cols=449 Identities=17% Similarity=0.157 Sum_probs=274.0
Q ss_pred CcccEEEecCCCCCcc-CCcccccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhHHHhccccCccccc
Q 039954 89 QRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKN 166 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 166 (578)
+.|++|++++|.++.+ |..+..+++|++|++++|.++.++ ..+.++++|++|++++|......|..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5666666666666555 455666666666666666666554 45666666666666666443333444666666666666
Q ss_pred CCCCccc-ccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCC
Q 039954 167 SNTKSLE-EMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGD 245 (578)
Q Consensus 167 ~~~~~~~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (578)
++|.+.+ ..|..++++++|+.|+..............+..+.+++ .+.+.... .....|.++..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~L~~n~--------------l~~~~~~~l~~ 170 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKALS--------------LRNYQSQSLKS 170 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETT--------------CCEECTTTTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC-eeeccCCc--------------ccccChhhhhc
Confidence 6666332 23455666666666632221101100001122222222 22211110 00113334433
Q ss_pred CCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCC
Q 039954 246 SSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSS 324 (578)
Q Consensus 246 ~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 324 (578)
+++|+.|+++.|....... ....+++|++|++++|.... ... ........+++|+.|++.++.. .+.......
T Consensus 171 --l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~l~ 244 (549)
T 2z81_A 171 --IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR-FQF--SPLPVDEVSSPMKKLAFRGSVL-TDESFNELL 244 (549)
T ss_dssp --CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT-CCC--CCCSSCCCCCCCCEEEEESCEE-EHHHHHHHH
T ss_pred --cccCceEecccCcccccchhhHhhcccccEEEccCCcccc-ccc--cccchhhhhhcccceecccccc-chhHHHHHH
Confidence 6788888888777643222 23457888888888775322 110 0000122367888888877632 111111111
Q ss_pred CccccCcccceeecccccccccC---------CCCCCCCCcceEEEEecCCchh---hHHHhcCCCCCccEEEeecCCCC
Q 039954 325 QGVERFPKLRELHILRCSKLQGT---------FPEHLPALEKLSLYVYGCSKLE---SIAERLDNNTSLETIRIFNCGNL 392 (578)
Q Consensus 325 ~~~~~~~~L~~L~l~~~~~l~~~---------~~~~l~~l~~L~l~~~~~~~l~---~i~~~~~~l~~L~~L~l~~~~~~ 392 (578)
..+..+++|+.+++.+| .+.+. .+..+++++.|.+.....+... .++.....+++|+.|++++|. +
T Consensus 245 ~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l 322 (549)
T 2z81_A 245 KLLRYILELSEVEFDDC-TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-V 322 (549)
T ss_dssp GGGGGCTTCCEEEEESC-EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-C
T ss_pred HHhhhhccccccccccc-cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-c
Confidence 11456788999999988 44421 1245667777665443322211 111112335689999999985 6
Q ss_pred cccccCC-CCCCCcceEEeccCCCccccC---CCCcCCCCccEEEeCcCCCCCccc---cccCCCCCccEEEecC-CcCC
Q 039954 393 KTLPSGL-HNLGQLQEIRIQKCRNLESFP---EGGLPCAKLTRLTILDCKRLEALP---KGLHNLTSLQELTIGG-ELPS 464 (578)
Q Consensus 393 ~~~~~~~-~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~-~l~~ 464 (578)
+.+|..+ ..+++|++|++++|...+.+| ..+..+++|+.|++++|... .++ ..+..+++|++|++++ .+..
T Consensus 323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 401 (549)
T 2z81_A 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHP 401 (549)
T ss_dssp CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCCC
T ss_pred ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCcc
Confidence 6777665 479999999999998876653 34678899999999999754 333 4588999999999999 8887
Q ss_pred cccC-CCCCCCcceeeccccccCC-----CcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCcccc
Q 039954 465 LEED-GLPTNLHSMIERGRGFHRF-----SSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERL 538 (578)
Q Consensus 465 l~~~-~~~~~l~~l~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 538 (578)
++.. ...++|+.+.+..+.+..+ ++|+.|++++ +.+..++ ..+++|++|++++| +++.+
T Consensus 402 lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~--N~l~~~~------------~~l~~L~~L~Ls~N-~l~~i 466 (549)
T 2z81_A 402 MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSN--NNLDSFS------------LFLPRLQELYISRN-KLKTL 466 (549)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCS--SCCSCCC------------CCCTTCCEEECCSS-CCSSC
T ss_pred CChhhcccccccEEECCCCCcccccchhcCCceEEECCC--CChhhhc------------ccCChhcEEECCCC-ccCcC
Confidence 7653 2345677777766655432 5788888888 3445443 25679999999995 88889
Q ss_pred ccccCCCCCcceEEeccCCCCcccCCCCC--CCcccceEecC
Q 039954 539 SSSIVDLQNLTILQLYNCPKLKYFPEKGL--PSSLLELDINR 578 (578)
Q Consensus 539 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~l~l~~ 578 (578)
|. ...+++|++|++++ ++++.+++..+ .++|+.|++++
T Consensus 467 p~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 467 PD-ASLFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp CC-GGGCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCS
T ss_pred CC-cccCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecC
Confidence 85 56789999999999 68988877543 35899988863
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-31 Score=286.04 Aligned_cols=347 Identities=17% Similarity=0.178 Sum_probs=209.9
Q ss_pred chhhhcccCcccEEEecCCCCCc------------------cCCccc--ccccccEEeccCCC-cccccccccCcCCccE
Q 039954 81 ILPKLLKLQRLRVFSLRGYRIPE------------------LPDSVG--DLRYLRYLNLSGTE-IRTLPESVNKLYNLHS 139 (578)
Q Consensus 81 ~~~~~~~l~~Lr~L~L~~~~i~~------------------lp~~i~--~l~~L~~L~L~~~~-i~~lp~~~~~l~~L~~ 139 (578)
+|..+.++++|++|+|++|.++. +|..++ ++++|++|+|++|. .+.+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67777788888888888888876 788777 88888888888887 4577888888888888
Q ss_pred EecCCCc-hhH-HhhHHHhccc-------cCcccccCCCCcccccCC--CCCCcccccccCcceeecCCCCCcccccccc
Q 039954 140 LLLEDCW-ELE-KLCADMGNLA-------KLHHLKNSNTKSLEEMPV--GIGRLTCLQTLCNFVVGNGSGSGLSELKLLM 208 (578)
Q Consensus 140 L~l~~~~-~~~-~lp~~l~~l~-------~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~ 208 (578)
|++++|. ... .+|..++.++ +|++|++++|. +..+|. .++++++|+.|......
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-------------- 584 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-------------- 584 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC--------------
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC--------------
Confidence 8888885 444 6787777776 88888888888 447777 67777777766211110
Q ss_pred ccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCC-CCCCCCC-cceeeecCcCCce
Q 039954 209 HLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALP-SVGQLPS-LTHLAVCGMSRVK 286 (578)
Q Consensus 209 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~-L~~L~l~~~~~~~ 286 (578)
+ ..+| .+. .+++|+.|++++|.+. .+| .+..+++ |+.|++++|. ++
T Consensus 585 -------------------------l--~~lp-~~~--~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~ 632 (876)
T 4ecn_A 585 -------------------------V--RHLE-AFG--TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LK 632 (876)
T ss_dssp -------------------------C--CBCC-CCC--TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CC
T ss_pred -------------------------c--ccch-hhc--CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CC
Confidence 0 0122 222 2667777777777776 444 6667777 7777777765 22
Q ss_pred ecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCC---CC--CCcceEEE
Q 039954 287 RLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEH---LP--ALEKLSLY 361 (578)
Q Consensus 287 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~---l~--~l~~L~l~ 361 (578)
.++..+. ....++|+.|++++| .+.+.+|.. +. .+..|+..
T Consensus 633 ~lp~~~~---------------------------------~~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 633 YIPNIFN---------------------------------AKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp SCCSCCC---------------------------------TTCSSCEEEEECCSS-CTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred cCchhhh---------------------------------ccccCCCCEEECcCC-cCCCccccchhhhccccCCCcCEE
Confidence 3322110 011223555555554 343322211 11 00112211
Q ss_pred EecCCchhhHHHhc-CCCCCccEEEeecCCCCcccccCCCCC--------CCcceEEeccCCCccccCCCCc--CCCCcc
Q 039954 362 VYGCSKLESIAERL-DNNTSLETIRIFNCGNLKTLPSGLHNL--------GQLQEIRIQKCRNLESFPEGGL--PCAKLT 430 (578)
Q Consensus 362 ~~~~~~l~~i~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l--------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~ 430 (578)
..+.+.+..+|..+ ..+++|+.|++++|. +..+|..+... ++|++|++++|... .+|..+. .+++|+
T Consensus 679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~ 756 (876)
T 4ecn_A 679 TLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLS 756 (876)
T ss_dssp ECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCC
T ss_pred EccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcC
Confidence 12222222333333 366778888888774 34665543322 27888888776444 6666555 677888
Q ss_pred EEEeCcCCCCCccccccCCCCCccEEEecC-C-cCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCC
Q 039954 431 RLTILDCKRLEALPKGLHNLTSLQELTIGG-E-LPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPK 508 (578)
Q Consensus 431 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~-l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 508 (578)
.|++++|...+ +|..+.++++|+.|++++ . +..-.. ....+..+..+++|+.|++++ +.+..+|..
T Consensus 757 ~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l---------~~~ip~~l~~L~~L~~L~Ls~--N~L~~Ip~~ 824 (876)
T 4ecn_A 757 NMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI---------LRQWPTGITTCPSLIQLQIGS--NDIRKVDEK 824 (876)
T ss_dssp EEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC---------CCCCCTTGGGCSSCCEEECCS--SCCCBCCSC
T ss_pred EEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc---------cccChHHHhcCCCCCEEECCC--CCCCccCHh
Confidence 88888776444 677777778888888765 2 100000 001122466677788888877 344667653
Q ss_pred CCCCCCCCCCCCCccccEEEeccCC
Q 039954 509 ADDKGSGTALPLPASLTSLMINNFP 533 (578)
Q Consensus 509 ~~~~~~~~~~~~~~~L~~L~l~~~~ 533 (578)
..++|+.|+|++|+
T Consensus 825 -----------l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 825 -----------LTPQLYILDIADNP 838 (876)
T ss_dssp -----------CCSSSCEEECCSCT
T ss_pred -----------hcCCCCEEECCCCC
Confidence 23577788887764
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-32 Score=294.98 Aligned_cols=364 Identities=15% Similarity=0.136 Sum_probs=244.9
Q ss_pred CCcccccccccCcCCccEEecCCCchhH-----------------HhhHHHh--ccccCcccccCCCCcccccCCCCCCc
Q 039954 122 TEIRTLPESVNKLYNLHSLLLEDCWELE-----------------KLCADMG--NLAKLHHLKNSNTKSLEEMPVGIGRL 182 (578)
Q Consensus 122 ~~i~~lp~~~~~l~~L~~L~l~~~~~~~-----------------~lp~~l~--~l~~L~~L~l~~~~~~~~lp~~i~~l 182 (578)
|.++.+|..++++++|++|++++|.... .+|..++ ++++|+.|++++|.+.+.+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4455577777788888888888775444 2777766 78888888888777677777777777
Q ss_pred ccccccCcceeecCCC-CCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCC
Q 039954 183 TCLQTLCNFVVGNGSG-SGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDM 261 (578)
Q Consensus 183 ~~L~~L~~~~~~~~~~-~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 261 (578)
++|+.|.........+ ..+..+..+.. .+ ..+++|+.|++++|.+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~--------------------------------~~--~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLAD--------------------------------DE--DTGPKIQIFYMGYNNL 560 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHH--------------------------------CT--TTTTTCCEEECCSSCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhh--------------------------------cc--cccCCccEEEeeCCcC
Confidence 7777773221100000 00011111100 00 1267889999999888
Q ss_pred CCCCCC---CCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcc-cceee
Q 039954 262 CTALPS---VGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPK-LRELH 337 (578)
Q Consensus 262 ~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~L~ 337 (578)
. .+|. +..+++|+.|++++|... .++ . ...+++|+.|+++++... ..+..+..+++ |+.|+
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~------~~~L~~L~~L~Ls~N~l~------~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A------FGTNVKLTDLKLDYNQIE------EIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C------CCTTSEESEEECCSSCCS------CCCTTSCEECTTCCEEE
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-h------hcCCCcceEEECcCCccc------cchHHHhhccccCCEEE
Confidence 8 5544 788889999999888633 444 2 223788888888877522 22233778888 99999
Q ss_pred cccccccccCCCCCCCCCcc--eEEEEecCCchhh-HH---HhcC--CCCCccEEEeecCCCCcccccCC-CCCCCcceE
Q 039954 338 ILRCSKLQGTFPEHLPALEK--LSLYVYGCSKLES-IA---ERLD--NNTSLETIRIFNCGNLKTLPSGL-HNLGQLQEI 408 (578)
Q Consensus 338 l~~~~~l~~~~~~~l~~l~~--L~l~~~~~~~l~~-i~---~~~~--~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L 408 (578)
+++| .+. .+|..+..+.. |+....+.+.+.. +| ..+. .+++|+.|++++|.. ..+|..+ ..+++|++|
T Consensus 626 Ls~N-~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 626 FSHN-KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-QKFPTELFATGSPISTI 702 (876)
T ss_dssp CCSS-CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSCCHHHHHTTCCCSEE
T ss_pred CcCC-CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-CccCHHHHccCCCCCEE
Confidence 9998 687 78877665443 5433334444433 22 1222 345899999999854 4676554 378999999
Q ss_pred EeccCCCccccCCCCcC--------CCCccEEEeCcCCCCCccccccC--CCCCccEEEecC-CcCCcccCCCCCCCcce
Q 039954 409 RIQKCRNLESFPEGGLP--------CAKLTRLTILDCKRLEALPKGLH--NLTSLQELTIGG-ELPSLEEDGLPTNLHSM 477 (578)
Q Consensus 409 ~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l 477 (578)
++++|... .+|..... +++|+.|++++|.. +.+|..+. .+++|++|++++ .+..++.
T Consensus 703 ~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~---------- 770 (876)
T 4ecn_A 703 ILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSSFPT---------- 770 (876)
T ss_dssp ECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCC-CCCCGGGSTTTCTTCCEEECCSSCCSSCCC----------
T ss_pred ECCCCcCC-ccChHHhccccccccccCCccEEECCCCCC-ccchHHhhhccCCCcCEEEeCCCCCCccch----------
Confidence 99997555 67664433 33899999999874 47888886 899999999999 7776542
Q ss_pred eeccccccCCCcccEEEEeecC----CC-ccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccccCCCCCcceEE
Q 039954 478 IERGRGFHRFSSLRQLAIINCD----DD-MVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQ 552 (578)
Q Consensus 478 ~~~~~~~~~l~~L~~L~l~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~ 552 (578)
.+..+++|+.|++++|. +. ...+|... ..+++|++|++++| .++.+|..+. ++|+.|+
T Consensus 771 -----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l---------~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~Ld 833 (876)
T 4ecn_A 771 -----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI---------TTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILD 833 (876)
T ss_dssp -----GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG---------GGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEE
T ss_pred -----hhhcCCCCCEEECCCCCCcccccccccChHHH---------hcCCCCCEEECCCC-CCCccCHhhc--CCCCEEE
Confidence 46788999999997621 22 33445433 56789999999996 6688987543 6999999
Q ss_pred eccCCCCcccCCCCC
Q 039954 553 LYNCPKLKYFPEKGL 567 (578)
Q Consensus 553 l~~c~~l~~l~~~~~ 567 (578)
+++ |.+..+....+
T Consensus 834 Ls~-N~l~~i~~~~~ 847 (876)
T 4ecn_A 834 IAD-NPNISIDVTSV 847 (876)
T ss_dssp CCS-CTTCEEECGGG
T ss_pred CCC-CCCCccChHHc
Confidence 999 56776655433
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=283.32 Aligned_cols=455 Identities=17% Similarity=0.148 Sum_probs=249.4
Q ss_pred ccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCcc-CCcccccccccEEeccCCCccccc-ccccCcCC
Q 039954 59 QHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLP-ESVNKLYN 136 (578)
Q Consensus 59 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~ 136 (578)
+.+++|.+. + |.+....+.+|.++++|++|++++|.++.+ |..|+++++|++|++++|.++.+| ..+.++++
T Consensus 28 ~~l~~L~Ls---~---n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLS---F---NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECC---S---CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccEEEcc---C---CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 568888544 3 334444455677999999999999999888 567899999999999999998886 67899999
Q ss_pred ccEEecCCCchhHHhhH-HHhccccCcccccCCCCccc-ccCCCCCCcccccccCcceeecCCCCCccccccccccc---
Q 039954 137 LHSLLLEDCWELEKLCA-DMGNLAKLHHLKNSNTKSLE-EMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLR--- 211 (578)
Q Consensus 137 L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~-~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~--- 211 (578)
|++|++++|. +..++. .++.+++|++|++++|.+.. .+|..++++++|++|....... .......++.+.++.
T Consensus 102 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 102 LQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp CCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCC
T ss_pred cccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhh
Confidence 9999999994 444443 58999999999999998544 4788899999999984332211 111122333333331
Q ss_pred cceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCC-CC-CCCCCCCcceeeecCcC-----C
Q 039954 212 GALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTA-LP-SVGQLPSLTHLAVCGMS-----R 284 (578)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~-~l~~l~~L~~L~l~~~~-----~ 284 (578)
..+.+.... +. ...|..+. ..+|+.|++++|..... ++ .+..+++++...+.... .
T Consensus 180 ~~L~l~~n~-l~-------------~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 180 LSLDLSLNP-MN-------------FIQPGAFK---EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp CEEECTTCC-CC-------------EECTTTTT---TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred hhcccCCCC-ce-------------ecCHHHhc---cCcceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 022211110 00 00111111 23677777777643211 11 22233333322221100 0
Q ss_pred ceecCccccC----------------------CCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeeccccc
Q 039954 285 VKRLGSEFYG----------------------NDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCS 342 (578)
Q Consensus 285 ~~~~~~~~~~----------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 342 (578)
++.+....+. ......+++|++|++.++... ..+..+..+ +|++|++++|
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~------~l~~~~~~~-~L~~L~l~~n- 314 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE------RVKDFSYNF-GWQHLELVNC- 314 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC------SCCBCCSCC-CCSEEEEESC-
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch------hhhhhhccC-CccEEeeccC-
Confidence 0011000000 000112344444444443211 011112333 4555555544
Q ss_pred ccccCCC-CCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCccc--ccCCCCCCCcceEEeccCCCcccc
Q 039954 343 KLQGTFP-EHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTL--PSGLHNLGQLQEIRIQKCRNLESF 419 (578)
Q Consensus 343 ~l~~~~~-~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~ 419 (578)
.+. .+| ..+++++.|.+.. +.....++ ...+++|++|++++|...... +..+..+++|++|++++|...+ +
T Consensus 315 ~~~-~l~~~~l~~L~~L~l~~--n~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~ 388 (570)
T 2z63_A 315 KFG-QFPTLKLKSLKRLTFTS--NKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388 (570)
T ss_dssp BCS-SCCBCBCSSCCEEEEES--CBSCCBCC--CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-E
T ss_pred ccc-ccCcccccccCEEeCcC--Cccccccc--cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-c
Confidence 333 222 2233444433221 11111111 134445555555554322111 2334445555555555543222 2
Q ss_pred CCCCcCCCCccEEEeCcCCCCCccc-cccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEee
Q 039954 420 PEGGLPCAKLTRLTILDCKRLEALP-KGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIIN 497 (578)
Q Consensus 420 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~ 497 (578)
+..+..+++|+.|++++|...+..+ ..+.++++|++|++++ .+... .+..+.++++|+.|++++
T Consensus 389 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~l~~L~~L~l~~ 454 (570)
T 2z63_A 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--------------FNGIFNGLSSLEVLKMAG 454 (570)
T ss_dssp EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC--------------CTTTTTTCTTCCEEECTT
T ss_pred cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc--------------chhhhhcCCcCcEEECcC
Confidence 2224445555555555554333222 2344555555555554 33222 123567899999999999
Q ss_pred cCCCc-cccCCCCCCCCCCCCCCCCccccEEEeccCCCcccc-ccccCCCCCcceEEeccCCCCcccCCCCC--CCcccc
Q 039954 498 CDDDM-VSFPPKADDKGSGTALPLPASLTSLMINNFPNLERL-SSSIVDLQNLTILQLYNCPKLKYFPEKGL--PSSLLE 573 (578)
Q Consensus 498 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~ 573 (578)
|... ..+|... ..+++|++|++++| .++.+ |..+..+++|++|++++ ++++.+++..+ .++|+.
T Consensus 455 -n~l~~~~~p~~~---------~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 455 -NSFQENFLPDIF---------TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMAS-NQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp -CEEGGGEECSCC---------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCE
T ss_pred -CcCccccchhhh---------hcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCC-CcCCCCCHHHhhcccCCcE
Confidence 3322 2466443 67889999999996 66666 66889999999999999 58998877554 358999
Q ss_pred eEecC
Q 039954 574 LDINR 578 (578)
Q Consensus 574 l~l~~ 578 (578)
|++++
T Consensus 523 L~l~~ 527 (570)
T 2z63_A 523 IWLHT 527 (570)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 98863
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=6.9e-31 Score=275.94 Aligned_cols=447 Identities=17% Similarity=0.128 Sum_probs=282.6
Q ss_pred eEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCcc-CCccccccccc
Q 039954 37 RHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPEL-PDSVGDLRYLR 115 (578)
Q Consensus 37 r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~ 115 (578)
+++.+..+....+. ..+ .+++++|.+.+ |.+....+.+|.++++|++|++++|.++.+ |..|.++++|+
T Consensus 34 ~~l~ls~~~L~~ip--~~~--~~~L~~L~Ls~------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 34 SMVDYSNRNLTHVP--KDL--PPRTKALSLSQ------NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp CEEECTTSCCCSCC--TTS--CTTCCEEECCS------SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred cEEEcCCCCCccCC--CCC--CCCcCEEECCC------CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 56666655554321 112 26777774433 333443345666888888888888888776 66778888888
Q ss_pred EEeccCCCcccccccccCcCCccEEecCCCchhH-HhhHHHhccccCcccccCCCCcccccCCCCCCcccc--cccCcce
Q 039954 116 YLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELE-KLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCL--QTLCNFV 192 (578)
Q Consensus 116 ~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L--~~L~~~~ 192 (578)
+|++++|.++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.+.. ..+..+++| +.|....
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEE
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeec
Confidence 888888888888766 78888888888875433 334677888888888888877433 234444444 5442111
Q ss_pred eecC-CCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCC--CCC
Q 039954 193 VGNG-SGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALP--SVG 269 (578)
Q Consensus 193 ~~~~-~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~ 269 (578)
.... ... .|.++.......+ .+++++|.+...++ .+.
T Consensus 179 n~l~~~~~---------------------------------------~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~ 218 (562)
T 3a79_B 179 VSYHIKGG---------------------------------------ETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVN 218 (562)
T ss_dssp SSCCCCSS---------------------------------------SCCEEEECCEEEE-EEEECSSSCCCCCCEEEES
T ss_pred cccccccc---------------------------------------CcccccccCcceE-EEEecCccchhhhhhhccc
Confidence 1000 000 1111111001122 44566666655444 455
Q ss_pred CCCCcceeeecCcCC----ceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccc
Q 039954 270 QLPSLTHLAVCGMSR----VKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQ 345 (578)
Q Consensus 270 ~l~~L~~L~l~~~~~----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 345 (578)
.+++|+.+++++|.. +......+ ...+.++.+.+.++..-..... ..+. ....++|++|++++| .+.
T Consensus 219 ~l~~L~~L~l~~n~~~~~~l~~~~~~l------~~l~~L~~L~L~~~~l~~~~~~-~~~~-~~~~~~L~~L~l~~n-~l~ 289 (562)
T 3a79_B 219 ALGHLQLSNIKLNDENCQRLMTFLSEL------TRGPTLLNVTLQHIETTWKCSV-KLFQ-FFWPRPVEYLNIYNL-TIT 289 (562)
T ss_dssp SEEEEEEEEEECCSTTHHHHHHHHHHH------HSCSSCEEEEEEEEEECHHHHH-HHHH-HHTTSSEEEEEEEEE-EEC
T ss_pred ccceEEEecccccccccchHHHHHHHH------hccCcceEEEecCCcCcHHHHH-HHHH-hhhcccccEEEEecc-Eee
Confidence 677777777776531 11111111 1256666676665431110000 0000 112358999999998 787
Q ss_pred cCCCCCC-----CCCcceEEEEecCCchhhHHH----hcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCc
Q 039954 346 GTFPEHL-----PALEKLSLYVYGCSKLESIAE----RLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNL 416 (578)
Q Consensus 346 ~~~~~~l-----~~l~~L~l~~~~~~~l~~i~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 416 (578)
+.+|..+ ++++.|++.....+.+ .+|. .+....+|++|++++|... ..+ ....+++|++|++++|...
T Consensus 290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~-~~~~l~~L~~L~l~~n~l~ 366 (562)
T 3a79_B 290 ERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFI-HMV-CPPSPSSFTFLNFTQNVFT 366 (562)
T ss_dssp SCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCC-CCC-CCSSCCCCCEEECCSSCCC
T ss_pred ccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcc-ccc-CccCCCCceEEECCCCccc
Confidence 7888776 8888887666555544 2321 1112257999999998543 222 1257899999999998888
Q ss_pred cccCCCCcCCCCccEEEeCcCCCCC--ccccccCCCCCccEEEecC-CcCC-cccCCCCCCCcceeeccccccCCCcccE
Q 039954 417 ESFPEGGLPCAKLTRLTILDCKRLE--ALPKGLHNLTSLQELTIGG-ELPS-LEEDGLPTNLHSMIERGRGFHRFSSLRQ 492 (578)
Q Consensus 417 ~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~l~~-l~~~~~~~~l~~l~~~~~~~~~l~~L~~ 492 (578)
+.+|..+..+++|+.|++++|...+ .+|..+.++++|++|++++ .+.. ++.. .+..+++|+.
T Consensus 367 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--------------~~~~l~~L~~ 432 (562)
T 3a79_B 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR--------------TCAWAESILV 432 (562)
T ss_dssp TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC--------------CCCCCTTCCE
T ss_pred cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh--------------hhcCcccCCE
Confidence 7788888899999999999987544 4456789999999999999 7765 5432 3567789999
Q ss_pred EEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccccCCCCCcceEEeccCCCCcccCCCCC--CCc
Q 039954 493 LAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQLYNCPKLKYFPEKGL--PSS 570 (578)
Q Consensus 493 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~s 570 (578)
|++++ +.-...++. ..+++|++|++++| +++.+|..+..+++|++|++++ ++++.+|...+ .++
T Consensus 433 L~l~~-n~l~~~~~~-----------~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 433 LNLSS-NMLTGSVFR-----------CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTS 498 (562)
T ss_dssp EECCS-SCCCGGGGS-----------SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTTCTT
T ss_pred EECCC-CCCCcchhh-----------hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhcCCC
Confidence 99988 333233332 23368999999995 8888888666889999999988 68888887522 358
Q ss_pred ccceEecC
Q 039954 571 LLELDINR 578 (578)
Q Consensus 571 L~~l~l~~ 578 (578)
|+.|++.+
T Consensus 499 L~~L~l~~ 506 (562)
T 3a79_B 499 LQYIWLHD 506 (562)
T ss_dssp CCCEECCS
T ss_pred CCEEEecC
Confidence 88888763
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=7.1e-31 Score=273.61 Aligned_cols=431 Identities=14% Similarity=0.102 Sum_probs=286.6
Q ss_pred CCCCCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcccc
Q 039954 31 SFSENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGD 110 (578)
Q Consensus 31 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~ 110 (578)
.++++++++.+..+.+.... ...+..+++|++|.+.+ |.+....|..|.++++|++|++++|.++.+|.. .
T Consensus 18 ~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~ 88 (520)
T 2z7x_B 18 DLSQKTTILNISQNYISELW-TSDILSLSKLRILIISH------NRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--P 88 (520)
T ss_dssp SCCTTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCS------SCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--C
T ss_pred cccccccEEECCCCcccccC-hhhccccccccEEecCC------CccCCcChHHhhcccCCCEEecCCCceeecCcc--c
Confidence 34578999999988876532 24678899999996544 445555577788999999999999999999877 8
Q ss_pred cccccEEeccCCCccc--ccccccCcCCccEEecCCCchhHHhhHHHhccccC--cccccCCCCc--ccccCCCCCCccc
Q 039954 111 LRYLRYLNLSGTEIRT--LPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKL--HHLKNSNTKS--LEEMPVGIGRLTC 184 (578)
Q Consensus 111 l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L--~~L~l~~~~~--~~~lp~~i~~l~~ 184 (578)
+++|++|++++|.+.. +|..++++++|++|++++|.... ..++.+++| +.|++++|.+ ....|..++.+..
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccccc
Confidence 9999999999999875 57899999999999999996544 357788888 9999999986 5666777766653
Q ss_pred ccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCC----
Q 039954 185 LQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCD---- 260 (578)
Q Consensus 185 L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---- 260 (578)
+.+.....++. ..+...+..+ ..+++|+.+++++|.
T Consensus 166 -~~l~l~l~~n~-------------------------------------~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~ 205 (520)
T 2z7x_B 166 -ESLHIVFPTNK-------------------------------------EFHFILDVSV--KTVANLELSNIKCVLEDNK 205 (520)
T ss_dssp -EEEEEECCSSS-------------------------------------CCCCCCCCCC--TTCSEEEECCEEECCSTTT
T ss_pred -ceEEEEeccCc-------------------------------------chhhhhhhhh--hcccceeeccccccccccc
Confidence 22211100000 0000001111 126677777777765
Q ss_pred ---CCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCcc-----ccCcc
Q 039954 261 ---MCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGV-----ERFPK 332 (578)
Q Consensus 261 ---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----~~~~~ 332 (578)
+.+.++.+..+++|+.|++.++............ ....++|+.|+++++.... ..+..+ +.+++
T Consensus 206 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~-----~~p~~~~~~~~~~l~~ 277 (520)
T 2z7x_B 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ---LVWHTTVWYFSISNVKLQG-----QLDFRDFDYSGTSLKA 277 (520)
T ss_dssp THHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH---HHHTSSCSEEEEEEEEEES-----CCCCCCCCCCSCCCCE
T ss_pred cceeecchhhhccccchhhccccccccCHHHHHHHHH---HhhhCcccEEEeecccccC-----ccccchhhcccccCce
Confidence 2223335566777777777665421111000000 0013467777776653110 111112 56777
Q ss_pred cceeecccccccccCCCC-CC------CCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCc
Q 039954 333 LRELHILRCSKLQGTFPE-HL------PALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQL 405 (578)
Q Consensus 333 L~~L~l~~~~~l~~~~~~-~l------~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 405 (578)
|+.+++++| .+ .+|. .+ .+++.|.+.... +..++ ....+++|++|++++|.....+|..+..+++|
T Consensus 278 L~~l~l~~n-~~--~~p~~~~~~~~~~~~L~~L~l~~n~---l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 350 (520)
T 2z7x_B 278 LSIHQVVSD-VF--GFPQSYIYEIFSNMNIKNFTVSGTR---MVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350 (520)
T ss_dssp EEEEEEEEC-CC--CSCTHHHHHHHHTCCCSEEEEESSC---CCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC
T ss_pred eEecccccc-ce--ecchhhhhcccccCceeEEEcCCCc---ccccc-chhhCCcccEEEeECCccChhhhhhhccCCCC
Confidence 777777776 33 3331 11 235554443222 22111 12577889999999987666678888889999
Q ss_pred ceEEeccCCCcc--ccCCCCcCCCCccEEEeCcCCCCCccccc-cCCCCCccEEEecC-CcCCcccCCCCCCCcceeecc
Q 039954 406 QEIRIQKCRNLE--SFPEGGLPCAKLTRLTILDCKRLEALPKG-LHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERG 481 (578)
Q Consensus 406 ~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~ 481 (578)
++|++++|...+ .+|..+..+++|+.|++++|...+.+|.. +..+++|++|++++ .+....
T Consensus 351 ~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~--------------- 415 (520)
T 2z7x_B 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI--------------- 415 (520)
T ss_dssp CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG---------------
T ss_pred CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch---------------
Confidence 999999877664 45555677889999999998866646654 78888999999988 664322
Q ss_pred ccccCC-CcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccc-cCCCCCcceEEeccCC
Q 039954 482 RGFHRF-SSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSS-IVDLQNLTILQLYNCP 557 (578)
Q Consensus 482 ~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~l~~L~~L~l~~c~ 557 (578)
...+ ++|+.|++++ +.+..+|... ..+++|++|++++| .++.+|.. +..+++|++|++++|+
T Consensus 416 --~~~l~~~L~~L~Ls~--N~l~~ip~~~---------~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 416 --FRCLPPRIKVLDLHS--NKIKSIPKQV---------VKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp --GGSCCTTCCEEECCS--SCCCCCCGGG---------GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred --hhhhcccCCEEECCC--Ccccccchhh---------hcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 1122 6888999988 4666777655 36788999999985 78888874 7888899999998853
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=4.6e-29 Score=267.05 Aligned_cols=491 Identities=18% Similarity=0.143 Sum_probs=264.9
Q ss_pred CCCCCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchh-hhcccCcccEEEecCCCCCccC-Ccc
Q 039954 31 SFSENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILP-KLLKLQRLRVFSLRGYRIPELP-DSV 108 (578)
Q Consensus 31 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~i~~lp-~~i 108 (578)
.+|..+++|.+..+.+..+. ..+|.++++|++|.+. + |. ...+++ +|.++++|++|+|++|.++.+| ..|
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls---~---N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLS---R---CE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp SSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECT---T---CC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECC---C---Cc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 34567888888887776543 2567788888888543 3 23 344544 4458888888888888888885 467
Q ss_pred cccccccEEeccCCCcccccc-cccCcCCccEEecCCCchhH-HhhHHHhccccCcccccCCCCcccccCCCCCCccccc
Q 039954 109 GDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCWELE-KLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQ 186 (578)
Q Consensus 109 ~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 186 (578)
.++++|++|++++|.++.+|. .++++++|++|++++|.... .+|..++.+++|++|++++|.+.+..|..+..+.+++
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 888888888888888888874 47888888888888885433 4567778888888888888885444445555555544
Q ss_pred ccCccee-ecCCCCC--ccccccccccccceeecc-ccCccccchhhhh------------cCCCCCC----CCCCcCCC
Q 039954 187 TLCNFVV-GNGSGSG--LSELKLLMHLRGALEISK-LENVKDVGNAKEA------------RGYGGTN----FPAWLGDS 246 (578)
Q Consensus 187 ~L~~~~~-~~~~~~~--~~~L~~l~~l~~~l~~~~-~~~~~~~~~~~~~------------~~~~~~~----~~~~~~~~ 246 (578)
.+..... ....... ........ +. .+.... ............. ....... .+..+.
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~~~~-~~-~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~-- 276 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFKEIR-LH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE-- 276 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCE-EE-EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG--
T ss_pred hhhhhhhcccCcccccCcccccchh-hh-hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc--
Confidence 3311110 0000000 00000000 00 011000 0000000000000 0000000 000000
Q ss_pred CCCceeEEEeccCCCCCC----CCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCC
Q 039954 247 SFSNLVTLKFKNCDMCTA----LPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHG 322 (578)
Q Consensus 247 ~~~~L~~L~l~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 322 (578)
....+....+..+..... ...+....+++.+.+.++........ ....+++.|++.++......
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~---- 344 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF--------SYNFGWQHLELVNCKFGQFP---- 344 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG--------GSCCCCSEEEEESCEESSCC----
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccccc--------ccchhhhhhhcccccccCcC----
Confidence 123333333333222111 11334455555555555432211111 11445666666554311100
Q ss_pred CCCccccCcccceeecccccccccCC-CCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCC
Q 039954 323 SSQGVERFPKLRELHILRCSKLQGTF-PEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHN 401 (578)
Q Consensus 323 ~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 401 (578)
...++.|+.+.+.++ ...... ...+++++.+.+...........+.....+.+|+++++..+. ....+..+..
T Consensus 345 ----~~~l~~L~~l~l~~n-~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~ 418 (635)
T 4g8a_A 345 ----TLKLKSLKRLTFTSN-KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLG 418 (635)
T ss_dssp ----CCBCTTCCEEEEESC-CSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTT
T ss_pred ----cccchhhhhcccccc-cCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccc
Confidence 223455566666554 222111 122344444433222222222233344556677777776653 3344555667
Q ss_pred CCCcceEEeccCCCccccC-CCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-C-cCCcccCCCCCCCccee
Q 039954 402 LGQLQEIRIQKCRNLESFP-EGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-E-LPSLEEDGLPTNLHSMI 478 (578)
Q Consensus 402 l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~-l~~l~~~~~~~~l~~l~ 478 (578)
+++|+.+++.++......+ ..+..+++++.++++.|......+..+..+++|+.|++++ . ...+.
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~------------ 486 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL------------ 486 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE------------
T ss_pred cccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccC------------
Confidence 7777777777665544433 2445667777777777766556666667777777777776 2 22221
Q ss_pred eccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCcccccc-ccCCCCCcceEEeccCC
Q 039954 479 ERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSS-SIVDLQNLTILQLYNCP 557 (578)
Q Consensus 479 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~ 557 (578)
+..+..+++|+.|++++ +.+..++... +..+++|++|+|+++ +++.++. .+.++++|+.|++++ |
T Consensus 487 --~~~~~~l~~L~~L~Ls~--N~L~~l~~~~--------f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~-N 552 (635)
T 4g8a_A 487 --PDIFTELRNLTFLDLSQ--CQLEQLSPTA--------FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL-N 552 (635)
T ss_dssp --CSCCTTCTTCCEEECTT--SCCCEECTTT--------TTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTT-S
T ss_pred --chhhhhccccCEEECCC--CccCCcChHH--------HcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCC-C
Confidence 12456677888888877 3556655443 246677888888884 6777654 677778888888877 6
Q ss_pred CCcccCCCCC---CCcccceEec
Q 039954 558 KLKYFPEKGL---PSSLLELDIN 577 (578)
Q Consensus 558 ~l~~l~~~~~---~~sL~~l~l~ 577 (578)
+++.+++..+ +++|+.|+++
T Consensus 553 ~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 553 HIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp CCCBCCSSCTTCCCTTCCEEECT
T ss_pred cCCCCCHHHHHhhhCcCCEEEee
Confidence 7777766543 4577877775
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.8e-29 Score=256.15 Aligned_cols=381 Identities=24% Similarity=0.246 Sum_probs=197.3
Q ss_pred ccCcccEEEecCCCCCccCCcccccccccEEeccCCCcc-cccccccCcCCc-------------cEEecCCCchhHHhh
Q 039954 87 KLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIR-TLPESVNKLYNL-------------HSLLLEDCWELEKLC 152 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L-------------~~L~l~~~~~~~~lp 152 (578)
+...|++|++++|.++.+|.+|+++++|++|++++|.+. .+|.+++.+++| ++|++++|. +..+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence 456777788877777777777788888888888777754 677777777665 666666653 33333
Q ss_pred HHHhccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhc
Q 039954 153 ADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEAR 232 (578)
Q Consensus 153 ~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 232 (578)
. ..++|++|++++|. .+.+|..+ ++|+.|.... ..+.
T Consensus 88 ~---~~~~L~~L~l~~n~-l~~lp~~~---~~L~~L~l~~------------------------n~l~------------ 124 (454)
T 1jl5_A 88 E---LPPHLESLVASCNS-LTELPELP---QSLKSLLVDN------------------------NNLK------------ 124 (454)
T ss_dssp S---CCTTCSEEECCSSC-CSSCCCCC---TTCCEEECCS------------------------SCCS------------
T ss_pred C---CcCCCCEEEccCCc-CCcccccc---CCCcEEECCC------------------------CccC------------
Confidence 3 12456666666665 33354332 3333331100 0000
Q ss_pred CCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccC
Q 039954 233 GYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDM 312 (578)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (578)
.+|.. .++|+.|++++|.+.+ ++.++.+++|++|++++|. ++.++. ...+|+.|+++++
T Consensus 125 -----~l~~~-----~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~-l~~lp~---------~~~~L~~L~L~~n 183 (454)
T 1jl5_A 125 -----ALSDL-----PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNS-LKKLPD---------LPPSLEFIAAGNN 183 (454)
T ss_dssp -----CCCSC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC-CSCCCC---------CCTTCCEEECCSS
T ss_pred -----cccCC-----CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCc-CcccCC---------CcccccEEECcCC
Confidence 01111 2577888888887765 5567778888888887775 322221 1457888888776
Q ss_pred CCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCC
Q 039954 313 QGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNL 392 (578)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~ 392 (578)
.. ... +.++.+++|++|++++| .++ .+|...++++.|.+.. +.++.+| .++.+++|++|++++|. +
T Consensus 184 ~l-~~l------~~~~~l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~---n~l~~lp-~~~~l~~L~~L~l~~N~-l 249 (454)
T 1jl5_A 184 QL-EEL------PELQNLPFLTAIYADNN-SLK-KLPDLPLSLESIVAGN---NILEELP-ELQNLPFLTTIYADNNL-L 249 (454)
T ss_dssp CC-SSC------CCCTTCTTCCEEECCSS-CCS-SCCCCCTTCCEEECCS---SCCSSCC-CCTTCTTCCEEECCSSC-C
T ss_pred cC-CcC------ccccCCCCCCEEECCCC-cCC-cCCCCcCcccEEECcC---CcCCccc-ccCCCCCCCEEECCCCc-C
Confidence 32 211 12667788888888887 566 4565556666654422 2344566 37778888888888874 4
Q ss_pred cccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCCC
Q 039954 393 KTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGLP 471 (578)
Q Consensus 393 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~ 471 (578)
+.+|. .+++|++|++++|... .+|.. +++|+.|++++|.. +.++. ..++|++|++++ .+..++ .++
T Consensus 250 ~~l~~---~~~~L~~L~l~~N~l~-~l~~~---~~~L~~L~ls~N~l-~~l~~---~~~~L~~L~l~~N~l~~i~--~~~ 316 (454)
T 1jl5_A 250 KTLPD---LPPSLEALNVRDNYLT-DLPEL---PQSLTFLDVSENIF-SGLSE---LPPNLYYLNASSNEIRSLC--DLP 316 (454)
T ss_dssp SSCCS---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCC-SEESC---CCTTCCEEECCSSCCSEEC--CCC
T ss_pred Ccccc---cccccCEEECCCCccc-ccCcc---cCcCCEEECcCCcc-CcccC---cCCcCCEEECcCCcCCccc--CCc
Confidence 44554 3477888888876543 35542 36788888888763 33332 125777888877 666554 234
Q ss_pred CCCcceeeccccccC----CCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccc---cccccCC
Q 039954 472 TNLHSMIERGRGFHR----FSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLER---LSSSIVD 544 (578)
Q Consensus 472 ~~l~~l~~~~~~~~~----l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---i~~~~~~ 544 (578)
.+++.+.+..+.+.+ +++|+.|++++ +.+..+|. .+++|++|+++++ .++. +|..+..
T Consensus 317 ~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~--N~l~~lp~------------~l~~L~~L~L~~N-~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 317 PSLEELNVSNNKLIELPALPPRLERLIASF--NHLAEVPE------------LPQNLKQLHVEYN-PLREFPDIPESVED 381 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCS--SCCSCCCC------------CCTTCCEEECCSS-CCSSCCCCCTTCCE
T ss_pred CcCCEEECCCCccccccccCCcCCEEECCC--Cccccccc------------hhhhccEEECCCC-CCCcCCCChHHHHh
Confidence 566777665544433 47899999988 35666663 3578999999985 5554 5555555
Q ss_pred C-------------CCcceEEeccCCCCcccCCCCCCCcccceEec
Q 039954 545 L-------------QNLTILQLYNCPKLKYFPEKGLPSSLLELDIN 577 (578)
Q Consensus 545 l-------------~~L~~L~l~~c~~l~~l~~~~~~~sL~~l~l~ 577 (578)
+ ++|+.|++++ ++++.++. +|++|+.|.+.
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls~-N~l~~~~~--iP~sl~~L~~~ 424 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVET-NPLREFPD--IPESVEDLRMN 424 (454)
T ss_dssp EECCC-----------------------------------------
T ss_pred hhhcccccccccccCcCCEEECCC-CcCCcccc--chhhHhheeCc
Confidence 5 7899999998 67877654 67788877664
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.7e-27 Score=243.87 Aligned_cols=361 Identities=14% Similarity=0.121 Sum_probs=205.0
Q ss_pred ccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCC-cc-CCcccccccccEEeccCCCcccc-cccccCcC
Q 039954 59 QHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIP-EL-PDSVGDLRYLRYLNLSGTEIRTL-PESVNKLY 135 (578)
Q Consensus 59 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~ 135 (578)
+++++|.+.+ |.+....|..|.++++|++|++++|.+. .+ |..|..+++|++|++++|.+..+ |..+++++
T Consensus 30 ~~l~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSL------NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCS------SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CccCEEEecC------CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 5666664432 3334444555667777777777777764 44 45677777777777777777655 56677777
Q ss_pred CccEEecCCCchhHHhhHH--HhccccCcccccCCCCcccccCCC-CCCcccccccCcceeecCCCCCcccccccccccc
Q 039954 136 NLHSLLLEDCWELEKLCAD--MGNLAKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRG 212 (578)
Q Consensus 136 ~L~~L~l~~~~~~~~lp~~--l~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~ 212 (578)
+|++|++++|......|.. ++.+++|++|++++|.+.+..|.. ++++++|+.|.......
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l----------------- 166 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV----------------- 166 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB-----------------
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc-----------------
Confidence 7777777777554444544 677777777777777744433444 56666666552211100
Q ss_pred ceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCC-C--------CCCCCCcceeeecCcC
Q 039954 213 ALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALP-S--------VGQLPSLTHLAVCGMS 283 (578)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~--------l~~l~~L~~L~l~~~~ 283 (578)
.. ..+..+.....++|+.|++++|.+....+ . +..+++|++|++++|.
T Consensus 167 -------~~----------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 167 -------KS----------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp -------SC----------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred -------cc----------------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 00 01111111112466666666666554322 1 2244556666665554
Q ss_pred CceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEe
Q 039954 284 RVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVY 363 (578)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~ 363 (578)
.....+..+.. ....++|+.|++++|.... ... ....+..
T Consensus 224 l~~~~~~~~~~--------------------------------~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~~------ 263 (455)
T 3v47_A 224 FKESMAKRFFD--------------------------------AIAGTKIQSLILSNSYNMG-SSF-GHTNFKD------ 263 (455)
T ss_dssp CCHHHHHHHHH--------------------------------HTTTCCEEEEECTTCTTTS-CCT-TCCSSCC------
T ss_pred ccccchhhhhc--------------------------------cccccceeeEeeccccccc-ccc-chhhhcc------
Confidence 22221111100 0112455566665552111 100 0000000
Q ss_pred cCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCcc
Q 039954 364 GCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEAL 443 (578)
Q Consensus 364 ~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 443 (578)
.......-...++|++|++++|......|..+..+++|++|++++|...+..|..+..+++|+.|++++|...+..
T Consensus 264 ----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 264 ----PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp ----CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred ----CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence 0000000112357888888887666666777777888888888887666666667777788888888887765555
Q ss_pred ccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCc
Q 039954 444 PKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPA 522 (578)
Q Consensus 444 ~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (578)
+..+..+++|++|++++ .+..+.. ..+.++++|++|++++ +.+..++.+. +..++
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~~~--------------~~~~~l~~L~~L~L~~--N~l~~~~~~~--------~~~l~ 395 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRALGD--------------QSFLGLPNLKELALDT--NQLKSVPDGI--------FDRLT 395 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEECT--------------TTTTTCTTCCEEECCS--SCCSCCCTTT--------TTTCT
T ss_pred hhHhcCcccCCEEECCCCcccccCh--------------hhccccccccEEECCC--CccccCCHhH--------hccCC
Confidence 66777788888888887 6654432 2456677888888877 4566666544 24567
Q ss_pred cccEEEeccCC
Q 039954 523 SLTSLMINNFP 533 (578)
Q Consensus 523 ~L~~L~l~~~~ 533 (578)
+|++|++++++
T Consensus 396 ~L~~L~l~~N~ 406 (455)
T 3v47_A 396 SLQKIWLHTNP 406 (455)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEEccCCC
Confidence 78888887753
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2.5e-27 Score=242.70 Aligned_cols=348 Identities=19% Similarity=0.269 Sum_probs=189.4
Q ss_pred cccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcC
Q 039954 56 YDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLY 135 (578)
Q Consensus 56 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~ 135 (578)
.+++++++|.+.+.. ...+| .+..+++|++|++++|.++.+|. +..+++|++|++++|.+..++. +.+++
T Consensus 43 ~~l~~l~~L~l~~~~-------i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 43 TDLDQVTTLQADRLG-------IKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLT 112 (466)
T ss_dssp HHHHTCCEEECCSSC-------CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred hHhccccEEecCCCC-------CccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCC
Confidence 345566666543322 12232 34566667777777666666654 6666667777776666666655 66666
Q ss_pred CccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCcccccccccccccee
Q 039954 136 NLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALE 215 (578)
Q Consensus 136 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~ 215 (578)
+|++|++++|. +..++. +..+++|++|++++|. +..++ .++.+++|+.|... +
T Consensus 113 ~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~---~-------------------- 165 (466)
T 1o6v_A 113 NLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFG---N-------------------- 165 (466)
T ss_dssp TCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEE---E--------------------
T ss_pred CCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecC---C--------------------
Confidence 67777776663 333433 6666666666666665 33333 24555555544210 0
Q ss_pred eccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCC
Q 039954 216 ISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGN 295 (578)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 295 (578)
.... .+. + ..+++|+.|++++|.+.. ++.+..+++|++|++++|.
T Consensus 166 --~~~~-----------------~~~-~--~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~------------ 210 (466)
T 1o6v_A 166 --QVTD-----------------LKP-L--ANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQ------------ 210 (466)
T ss_dssp --SCCC-----------------CGG-G--TTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC------------
T ss_pred --cccC-----------------chh-h--ccCCCCCEEECcCCcCCC-ChhhccCCCCCEEEecCCc------------
Confidence 0000 000 0 114556666666555432 2233444444444444432
Q ss_pred CCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhc
Q 039954 296 DAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERL 375 (578)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~ 375 (578)
.. .... ++.+++|+.|++++| .+.+ ++ .+
T Consensus 211 ------------------l~-~~~~------~~~l~~L~~L~l~~n-~l~~-~~------------------------~l 239 (466)
T 1o6v_A 211 ------------------IS-DITP------LGILTNLDELSLNGN-QLKD-IG------------------------TL 239 (466)
T ss_dssp ------------------CC-CCGG------GGGCTTCCEEECCSS-CCCC-CG------------------------GG
T ss_pred ------------------cc-cccc------ccccCCCCEEECCCC-Cccc-ch------------------------hh
Confidence 11 1000 456788889999887 5542 11 23
Q ss_pred CCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccE
Q 039954 376 DNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQE 455 (578)
Q Consensus 376 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 455 (578)
..+++|++|++++|... .++. +..+++|++|++++|......+ +..+++|+.|++++|...+ ++. +..+++|++
T Consensus 240 ~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~ 313 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISP-ISNLKNLTY 313 (466)
T ss_dssp GGCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSE
T ss_pred hcCCCCCEEECCCCccc-cchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC-chh-hcCCCCCCE
Confidence 44556777777776433 3322 5667777777777755443222 4556777777777765433 322 566677777
Q ss_pred EEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCC
Q 039954 456 LTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPN 534 (578)
Q Consensus 456 L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 534 (578)
|++++ .+..++ .+..+++|+.|++++ +.+..++. +..+++|++|++++| .
T Consensus 314 L~L~~n~l~~~~----------------~~~~l~~L~~L~l~~--n~l~~~~~----------l~~l~~L~~L~l~~n-~ 364 (466)
T 1o6v_A 314 LTLYFNNISDIS----------------PVSSLTKLQRLFFYN--NKVSDVSS----------LANLTNINWLSAGHN-Q 364 (466)
T ss_dssp EECCSSCCSCCG----------------GGGGCTTCCEEECCS--SCCCCCGG----------GTTCTTCCEEECCSS-C
T ss_pred EECcCCcCCCch----------------hhccCccCCEeECCC--CccCCchh----------hccCCCCCEEeCCCC-c
Confidence 77776 554443 145566777777766 23444321 245567777777775 4
Q ss_pred ccccccccCCCCCcceEEeccCCCCcccC
Q 039954 535 LERLSSSIVDLQNLTILQLYNCPKLKYFP 563 (578)
Q Consensus 535 l~~i~~~~~~l~~L~~L~l~~c~~l~~l~ 563 (578)
++.+++ +..+++|++|++++ +.++.+|
T Consensus 365 l~~~~~-~~~l~~L~~L~l~~-n~~~~~p 391 (466)
T 1o6v_A 365 ISDLTP-LANLTRITQLGLND-QAWTNAP 391 (466)
T ss_dssp CCBCGG-GTTCTTCCEEECCC-EEEECCC
T ss_pred cCccch-hhcCCCCCEEeccC-CcccCCc
Confidence 554442 66677777777776 3444433
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=6.8e-27 Score=239.41 Aligned_cols=354 Identities=14% Similarity=0.136 Sum_probs=241.2
Q ss_pred CcccEEEecCCCCCcc-CCcccccccccEEeccCCCcc-cc-cccccCcCCccEEecCCCchhHHhhHHHhccccCcccc
Q 039954 89 QRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIR-TL-PESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLK 165 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~-~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 165 (578)
++|++|++++|.++.+ |..++++++|++|++++|.+. .+ |..+.++++|++|++++|......|..++.+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6788888888888766 677888888888888888764 55 35677888888888888855555567788888888888
Q ss_pred cCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCC
Q 039954 166 NSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGD 245 (578)
Q Consensus 166 l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (578)
+++|.+.+..|.. .++
T Consensus 110 L~~n~l~~~~~~~--------------------------------------------------------------~~~-- 125 (455)
T 3v47_A 110 LTQCNLDGAVLSG--------------------------------------------------------------NFF-- 125 (455)
T ss_dssp CTTSCCBTHHHHS--------------------------------------------------------------STT--
T ss_pred CCCCCCCccccCc--------------------------------------------------------------ccc--
Confidence 8887733222211 001
Q ss_pred CCCCceeEEEeccCCCCCCCCC--CCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccC--
Q 039954 246 SSFSNLVTLKFKNCDMCTALPS--VGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPH-- 321 (578)
Q Consensus 246 ~~~~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-- 321 (578)
..+++|+.|++++|.+.+..+. +..+++|++|++++|......+..+.. ....+++.|++.++.........
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~----l~~~~L~~L~l~~n~l~~~~~~~~~ 201 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN----FQGKHFTLLRLSSITLQDMNEYWLG 201 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG----GTTCEEEEEECTTCBCTTCSTTCTT
T ss_pred cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc----cccccccccccccCcccccchhhcc
Confidence 1267889999999999877663 788999999999988633222211110 01245566666554321100000
Q ss_pred -CCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhc---CCCCCccEEEeecCCCCccc--
Q 039954 322 -GSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERL---DNNTSLETIRIFNCGNLKTL-- 395 (578)
Q Consensus 322 -~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~---~~l~~L~~L~l~~~~~~~~~-- 395 (578)
.....+..+++|++|++++| .+.+ .+|..+ ...++|+.|++++|......
T Consensus 202 ~~~~~~~~~~~~L~~L~Ls~n-~l~~-----------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 202 WEKCGNPFKNTSITTLDLSGN-GFKE-----------------------SMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp HHHHCCTTTTCEEEEEECTTS-CCCH-----------------------HHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccccccccceeeeEecCCC-cccc-----------------------cchhhhhccccccceeeEeeccccccccccc
Confidence 00000123456666666665 3432 222222 22368889999887543321
Q ss_pred --------ccCCC--CCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCC
Q 039954 396 --------PSGLH--NLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPS 464 (578)
Q Consensus 396 --------~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~ 464 (578)
+..+. ..++|++|++++|...+..|..+..+++|+.|++++|...+..|..+.++++|++|++++ .+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 01111 246899999999988888888888999999999999987767777899999999999999 7765
Q ss_pred cccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCcccccc-ccC
Q 039954 465 LEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSS-SIV 543 (578)
Q Consensus 465 l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~ 543 (578)
++. ..+.++++|++|++++ +.+..++... +..+++|++|+++++ .++.+|. .+.
T Consensus 338 ~~~--------------~~~~~l~~L~~L~Ls~--N~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~~~~ 392 (455)
T 3v47_A 338 IDS--------------RMFENLDKLEVLDLSY--NHIRALGDQS--------FLGLPNLKELALDTN-QLKSVPDGIFD 392 (455)
T ss_dssp ECG--------------GGGTTCTTCCEEECCS--SCCCEECTTT--------TTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred cCh--------------hHhcCcccCCEEECCC--CcccccChhh--------ccccccccEEECCCC-ccccCCHhHhc
Confidence 532 2577899999999999 4556664433 256789999999994 8888876 568
Q ss_pred CCCCcceEEeccCCCCc
Q 039954 544 DLQNLTILQLYNCPKLK 560 (578)
Q Consensus 544 ~l~~L~~L~l~~c~~l~ 560 (578)
.+++|++|++++| .+.
T Consensus 393 ~l~~L~~L~l~~N-~l~ 408 (455)
T 3v47_A 393 RLTSLQKIWLHTN-PWD 408 (455)
T ss_dssp TCTTCCEEECCSS-CBC
T ss_pred cCCcccEEEccCC-Ccc
Confidence 8999999999985 443
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=5.1e-27 Score=246.49 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=111.1
Q ss_pred CCCCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCccccc
Q 039954 32 FSENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDL 111 (578)
Q Consensus 32 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l 111 (578)
++++++++.+..+.+.... ...+..+++|++|.+.+ |.+....|..|.++++|++|++++|.++.+|.. .+
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l 120 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELR-MPDISFLSELRVLRLSH------NRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PM 120 (562)
T ss_dssp SCTTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCS------CCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CC
T ss_pred CCCCcCEEECCCCCccccC-hhhhccCCCccEEECCC------CCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cc
Confidence 4568999999988877543 25788999999996543 444554566677999999999999999999877 89
Q ss_pred ccccEEeccCCCccccc--ccccCcCCccEEecCCCchhHHhhHHHhccccC--cccccCCCCc--ccccCCCCCCcc
Q 039954 112 RYLRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKL--HHLKNSNTKS--LEEMPVGIGRLT 183 (578)
Q Consensus 112 ~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L--~~L~l~~~~~--~~~lp~~i~~l~ 183 (578)
++|++|++++|.++.+| ..++++++|++|++++|.... ..+..+++| +.|++++|.+ ....|..+..+.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccC
Confidence 99999999999998764 789999999999999996543 245666666 9999999986 455555555544
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.8e-27 Score=241.43 Aligned_cols=321 Identities=21% Similarity=0.285 Sum_probs=206.3
Q ss_pred CCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCccccccc
Q 039954 34 ENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRY 113 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~ 113 (578)
..+|.+.+....+.. ++.+..+++|++|.+.+. . ...+++ +.++++|++|++++|.+..++. ++.+++
T Consensus 46 ~~l~~L~l~~~~i~~---l~~~~~l~~L~~L~Ls~n------~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNN------Q-LTDITP-LKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp HTCCEEECCSSCCCC---CTTGGGCTTCCEEECCSS------C-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred ccccEEecCCCCCcc---CcchhhhcCCCEEECCCC------c-cCCchh-hhccccCCEEECCCCccccChh-hcCCCC
Confidence 578899888776654 456788999999965542 2 334444 7799999999999999988866 999999
Q ss_pred ccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccccCccee
Q 039954 114 LRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVV 193 (578)
Q Consensus 114 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~ 193 (578)
|++|++++|.++.+|. +..+++|++|++++|. +..++ .++.+++|+.|++++ . ...++ .++++++|+.|+....
T Consensus 114 L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~-~-~~~~~-~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 114 LTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN-Q-VTDLK-PLANLTTLERLDISSN 187 (466)
T ss_dssp CCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE-S-CCCCG-GGTTCTTCCEEECCSS
T ss_pred CCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCC-c-ccCch-hhccCCCCCEEECcCC
Confidence 9999999999999876 8999999999999994 44555 489999999999964 3 33333 2777888887732211
Q ss_pred ecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCC
Q 039954 194 GNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPS 273 (578)
Q Consensus 194 ~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 273 (578)
. +..+. .+ ..+++|+.|++++|.+.+..+ +..+++
T Consensus 188 ~------l~~~~------------------------------------~l--~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 222 (466)
T 1o6v_A 188 K------VSDIS------------------------------------VL--AKLTNLESLIATNNQISDITP-LGILTN 222 (466)
T ss_dssp C------CCCCG------------------------------------GG--GGCTTCSEEECCSSCCCCCGG-GGGCTT
T ss_pred c------CCCCh------------------------------------hh--ccCCCCCEEEecCCccccccc-ccccCC
Confidence 0 00000 01 127899999999999876544 677899
Q ss_pred cceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCC
Q 039954 274 LTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLP 353 (578)
Q Consensus 274 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 353 (578)
|++|++++|.. +.++. ...+++|+.|+++++... .... +..+++|++|++++| .+.+ ++
T Consensus 223 L~~L~l~~n~l-~~~~~-------l~~l~~L~~L~l~~n~l~-~~~~------~~~l~~L~~L~l~~n-~l~~-~~---- 281 (466)
T 1o6v_A 223 LDELSLNGNQL-KDIGT-------LASLTNLTDLDLANNQIS-NLAP------LSGLTKLTELKLGAN-QISN-IS---- 281 (466)
T ss_dssp CCEEECCSSCC-CCCGG-------GGGCTTCSEEECCSSCCC-CCGG------GTTCTTCSEEECCSS-CCCC-CG----
T ss_pred CCEEECCCCCc-ccchh-------hhcCCCCCEEECCCCccc-cchh------hhcCCCCCEEECCCC-ccCc-cc----
Confidence 99999998862 22211 122666777777665321 1110 455666777777666 4432 11
Q ss_pred CCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEE
Q 039954 354 ALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLT 433 (578)
Q Consensus 354 ~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 433 (578)
. +..+++|++|++++|. ++.++. +..+++|++|++++|...+..| +..+++|+.|+
T Consensus 282 -------------------~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 282 -------------------P-LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp -------------------G-GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred -------------------c-ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 1 3344556666666553 223322 4455566666666554433332 34455666666
Q ss_pred eCcCCCCCccccccCCCCCccEEEecC-CcCC
Q 039954 434 ILDCKRLEALPKGLHNLTSLQELTIGG-ELPS 464 (578)
Q Consensus 434 l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~ 464 (578)
+++|.. +.+ ..+.++++|++|++++ .+..
T Consensus 338 l~~n~l-~~~-~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 338 FYNNKV-SDV-SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CCSSCC-CCC-GGGTTCTTCCEEECCSSCCCB
T ss_pred CCCCcc-CCc-hhhccCCCCCEEeCCCCccCc
Confidence 665543 222 2455556666666655 4433
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.3e-26 Score=228.21 Aligned_cols=306 Identities=16% Similarity=0.291 Sum_probs=196.8
Q ss_pred hcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCccc
Q 039954 85 LLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHL 164 (578)
Q Consensus 85 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 164 (578)
+..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. +..+++|++|++++|. +..++ .+..+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEE
Confidence 3477888888888888887754 7888888888888888888876 8888888888888883 44454 47888888888
Q ss_pred ccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcC
Q 039954 165 KNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLG 244 (578)
Q Consensus 165 ~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (578)
++++|. +..++. +..
T Consensus 116 ~l~~n~-i~~~~~-~~~--------------------------------------------------------------- 130 (347)
T 4fmz_A 116 YLNEDN-ISDISP-LAN--------------------------------------------------------------- 130 (347)
T ss_dssp ECTTSC-CCCCGG-GTT---------------------------------------------------------------
T ss_pred ECcCCc-ccCchh-hcc---------------------------------------------------------------
Confidence 888877 333321 111
Q ss_pred CCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCC
Q 039954 245 DSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSS 324 (578)
Q Consensus 245 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 324 (578)
+++|+.|++++|.....++.+..+++|++|++++|... ....
T Consensus 131 ---l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~---------------------------------- 172 (347)
T 4fmz_A 131 ---LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTP---------------------------------- 172 (347)
T ss_dssp ---CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGG----------------------------------
T ss_pred ---CCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-Cchh----------------------------------
Confidence 45666667777655555555666777777777665411 1100
Q ss_pred CccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCC
Q 039954 325 QGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQ 404 (578)
Q Consensus 325 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 404 (578)
+..+++|++|++++| .+.+ ++ .+..+++|+.+++++|.. ..++. +..+++
T Consensus 173 --~~~l~~L~~L~l~~n-~l~~-~~------------------------~~~~l~~L~~L~l~~n~l-~~~~~-~~~~~~ 222 (347)
T 4fmz_A 173 --IANLTDLYSLSLNYN-QIED-IS------------------------PLASLTSLHYFTAYVNQI-TDITP-VANMTR 222 (347)
T ss_dssp --GGGCTTCSEEECTTS-CCCC-CG------------------------GGGGCTTCCEEECCSSCC-CCCGG-GGGCTT
T ss_pred --hccCCCCCEEEccCC-cccc-cc------------------------cccCCCccceeecccCCC-CCCch-hhcCCc
Confidence 344666677777666 3331 11 023445677777776633 33322 556677
Q ss_pred cceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeecccc
Q 039954 405 LQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRG 483 (578)
Q Consensus 405 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~ 483 (578)
|++|++++|.... ++. +..+++|+.|++++|.. +.+ ..+..+++|++|++++ .+..++ .
T Consensus 223 L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~l~~n~l~~~~----------------~ 282 (347)
T 4fmz_A 223 LNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQI-SDI-NAVKDLTKLKMLNVGSNQISDIS----------------V 282 (347)
T ss_dssp CCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC-CCC-GGGTTCTTCCEEECCSSCCCCCG----------------G
T ss_pred CCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCcc-CCC-hhHhcCCCcCEEEccCCccCCCh----------------h
Confidence 7777777765443 222 55667777777777753 333 3567777788888877 665553 3
Q ss_pred ccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccccCCCCCcceEEeccCCCCc
Q 039954 484 FHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQLYNCPKLK 560 (578)
Q Consensus 484 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~ 560 (578)
+..+++|+.|++++ | .+...+... +..+++|++|++++| .++.++. +..+++|++|++++| .++
T Consensus 283 ~~~l~~L~~L~L~~-n-~l~~~~~~~--------l~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N-~i~ 346 (347)
T 4fmz_A 283 LNNLSQLNSLFLNN-N-QLGNEDMEV--------IGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQ-VIK 346 (347)
T ss_dssp GGGCTTCSEEECCS-S-CCCGGGHHH--------HHTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC----
T ss_pred hcCCCCCCEEECcC-C-cCCCcChhH--------hhccccCCEEEccCC-ccccccC-hhhhhccceeehhhh-ccc
Confidence 56678888888888 3 333333222 145678888999886 4777764 778889999999884 443
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1e-26 Score=236.09 Aligned_cols=194 Identities=20% Similarity=0.138 Sum_probs=134.5
Q ss_pred CchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccc
Q 039954 80 SILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLA 159 (578)
Q Consensus 80 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~ 159 (578)
..+..+.++++|++|++++|.++.+| .++.+++|++|++++|.++.+| ++.+++|++|++++|. +..++ ++.++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~ 106 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLT 106 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCT
T ss_pred ccccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCC
Confidence 33445668888888888888888776 6888888888888888888876 7788888888888884 44443 78888
Q ss_pred cCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCC
Q 039954 160 KLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNF 239 (578)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (578)
+|++|++++|. ++.+| ++.+++|+.|..... .+.. +
T Consensus 107 ~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N------------------------~l~~-----------------l 142 (457)
T 3bz5_A 107 KLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARN------------------------TLTE-----------------I 142 (457)
T ss_dssp TCCEEECCSSC-CSCCC--CTTCTTCCEEECTTS------------------------CCSC-----------------C
T ss_pred cCCEEECCCCc-CCeec--CCCCCcCCEEECCCC------------------------ccce-----------------e
Confidence 88888888887 44454 667777776622111 0000 0
Q ss_pred CCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccc
Q 039954 240 PAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWI 319 (578)
Q Consensus 240 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 319 (578)
+ + ..+++|+.|++++|...+.+ .+..+++|++|++++|. ++.++ ...+++|+.|++.++.-- ..
T Consensus 143 ~--l--~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~l~--------l~~l~~L~~L~l~~N~l~-~~- 206 (457)
T 3bz5_A 143 D--V--SHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNK-ITELD--------VSQNKLLNRLNCDTNNIT-KL- 206 (457)
T ss_dssp C--C--TTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSC-CCCCC--------CTTCTTCCEEECCSSCCS-CC-
T ss_pred c--c--ccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCc-cceec--------cccCCCCCEEECcCCcCC-ee-
Confidence 0 1 12778888999888665555 56788899999998875 33332 223778888888776421 11
Q ss_pred cCCCCCccccCcccceeeccccccccc
Q 039954 320 PHGSSQGVERFPKLRELHILRCSKLQG 346 (578)
Q Consensus 320 ~~~~~~~~~~~~~L~~L~l~~~~~l~~ 346 (578)
.++.+++|++|++++| ++++
T Consensus 207 ------~l~~l~~L~~L~Ls~N-~l~~ 226 (457)
T 3bz5_A 207 ------DLNQNIQLTFLDCSSN-KLTE 226 (457)
T ss_dssp ------CCTTCTTCSEEECCSS-CCSC
T ss_pred ------ccccCCCCCEEECcCC-cccc
Confidence 1567788888888887 6663
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=9.6e-27 Score=249.04 Aligned_cols=143 Identities=22% Similarity=0.255 Sum_probs=107.2
Q ss_pred CCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhh-hcccCcccEEEecCCCCCccC-Cccccc
Q 039954 34 ENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPK-LLKLQRLRVFSLRGYRIPELP-DSVGDL 111 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~-~~~l~~Lr~L~L~~~~i~~lp-~~i~~l 111 (578)
.+++.|.+..+.+..+. ..+|.++++|++|.+.+ |. ...+|.. |.++++|++|++++|.++.+| ..|+++
T Consensus 76 ~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~------N~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L 147 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTG------NP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 147 (635)
T ss_dssp TTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTT------CC-CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred CCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccC------Cc-CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence 46788888887776543 25688999999995543 33 3456655 459999999999999999885 468999
Q ss_pred ccccEEeccCCCccc--ccccccCcCCccEEecCCCchhHHhhHHHhccccCc----ccccCCCCcccccCCCCCCcccc
Q 039954 112 RYLRYLNLSGTEIRT--LPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLH----HLKNSNTKSLEEMPVGIGRLTCL 185 (578)
Q Consensus 112 ~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~----~L~l~~~~~~~~lp~~i~~l~~L 185 (578)
++|++|++++|.++. +|..++.+++|++|++++|......+..+..+.+++ .++++.|. +..++........+
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~-l~~i~~~~~~~~~~ 226 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRL 226 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEE
T ss_pred cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc-ccccCcccccchhh
Confidence 999999999999874 578889999999999999966555566677766655 46677777 45555444333333
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=6.3e-26 Score=233.46 Aligned_cols=294 Identities=20% Similarity=0.248 Sum_probs=185.4
Q ss_pred CcccEEEecCCCCCcc-CCcccccccccEEeccCCCcccc-cccccCcCCccEEecCCCchhHHhhH-HHhccccCcccc
Q 039954 89 QRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCWELEKLCA-DMGNLAKLHHLK 165 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~ 165 (578)
+.+++|++++|.++.+ |..|..+++|++|++++|.++.+ |..+.++++|++|++++|. +..+|. .++.+++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEE
Confidence 4566777777766665 45666677777777777666655 4556666666666666663 333333 345666666666
Q ss_pred cCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCC
Q 039954 166 NSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGD 245 (578)
Q Consensus 166 l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (578)
+++|.+....|..+..
T Consensus 111 Ls~n~i~~~~~~~~~~---------------------------------------------------------------- 126 (477)
T 2id5_A 111 ISENKIVILLDYMFQD---------------------------------------------------------------- 126 (477)
T ss_dssp CTTSCCCEECTTTTTT----------------------------------------------------------------
T ss_pred CCCCccccCChhHccc----------------------------------------------------------------
Confidence 6666522221211111
Q ss_pred CCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCC
Q 039954 246 SSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSS 324 (578)
Q Consensus 246 ~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 324 (578)
+++|+.|++++|.+....+ .+..+++|++|++++|. ++.++..
T Consensus 127 --l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~--------------------------------- 170 (477)
T 2id5_A 127 --LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTE--------------------------------- 170 (477)
T ss_dssp --CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHH---------------------------------
T ss_pred --cccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChh---------------------------------
Confidence 4566666666666654433 55666666666666653 1111100
Q ss_pred CccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCC
Q 039954 325 QGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQ 404 (578)
Q Consensus 325 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 404 (578)
.+..+++|+.|++++| .+.+..+. .+..+++|++|++++|.....++.......+
T Consensus 171 -~l~~l~~L~~L~l~~n-~i~~~~~~-----------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 171 -ALSHLHGLIVLRLRHL-NINAIRDY-----------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp -HHTTCTTCCEEEEESC-CCCEECTT-----------------------CSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred -HhcccCCCcEEeCCCC-cCcEeChh-----------------------hcccCcccceeeCCCCccccccCcccccCcc
Confidence 0455777888888777 45422221 2455667888888888877777776666678
Q ss_pred cceEEeccCCCccccC-CCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccc
Q 039954 405 LQEIRIQKCRNLESFP-EGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGR 482 (578)
Q Consensus 405 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~ 482 (578)
|++|++++|... .+| ..+..+++|+.|++++|......+..+..+++|++|++++ .+..+.. .
T Consensus 226 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------~ 290 (477)
T 2id5_A 226 LTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP--------------Y 290 (477)
T ss_dssp CSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT--------------T
T ss_pred ccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH--------------H
Confidence 888888886544 444 3456678888888888876555555678888888888888 6655532 2
Q ss_pred cccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCC
Q 039954 483 GFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFP 533 (578)
Q Consensus 483 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 533 (578)
.+.++++|+.|++++ +.+..++... +..+++|++|++++++
T Consensus 291 ~~~~l~~L~~L~L~~--N~l~~~~~~~--------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 291 AFRGLNYLRVLNVSG--NQLTTLEESV--------FHSVGNLETLILDSNP 331 (477)
T ss_dssp TBTTCTTCCEEECCS--SCCSCCCGGG--------BSCGGGCCEEECCSSC
T ss_pred HhcCcccCCEEECCC--CcCceeCHhH--------cCCCcccCEEEccCCC
Confidence 467788888888888 4666666554 2456788888888853
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.7e-26 Score=232.78 Aligned_cols=351 Identities=22% Similarity=0.264 Sum_probs=223.1
Q ss_pred CCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccC-------------cccccCCCCc
Q 039954 105 PDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKL-------------HHLKNSNTKS 171 (578)
Q Consensus 105 p~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L-------------~~L~l~~~~~ 171 (578)
|+.+ +..+|++|++++|.++.+|.+++++++|++|++++|...+.+|..++.+++| ++|++++|.
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~- 82 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG- 82 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-
T ss_pred cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-
Confidence 4444 4689999999999999999999999999999999997777888888887765 778888887
Q ss_pred ccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCce
Q 039954 172 LEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNL 251 (578)
Q Consensus 172 ~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 251 (578)
.+.+|... ++|+.|+. ....+ ..+|.. +++|
T Consensus 83 l~~lp~~~---~~L~~L~l------------------------~~n~l-----------------~~lp~~-----~~~L 113 (454)
T 1jl5_A 83 LSSLPELP---PHLESLVA------------------------SCNSL-----------------TELPEL-----PQSL 113 (454)
T ss_dssp CSCCCSCC---TTCSEEEC------------------------CSSCC-----------------SSCCCC-----CTTC
T ss_pred cccCCCCc---CCCCEEEc------------------------cCCcC-----------------Cccccc-----cCCC
Confidence 55555532 34444411 10000 012221 4689
Q ss_pred eEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCc
Q 039954 252 VTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFP 331 (578)
Q Consensus 252 ~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 331 (578)
+.|++++|.+.+ ++.+ .++|++|++++|. ++.++ . ...+++|+.|+++++. +... -...+
T Consensus 114 ~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~-l~~lp-~------~~~l~~L~~L~l~~N~-l~~l--------p~~~~ 173 (454)
T 1jl5_A 114 KSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQ-LEKLP-E------LQNSSFLKIIDVDNNS-LKKL--------PDLPP 173 (454)
T ss_dssp CEEECCSSCCSC-CCSC--CTTCCEEECCSSC-CSSCC-C------CTTCTTCCEEECCSSC-CSCC--------CCCCT
T ss_pred cEEECCCCccCc-ccCC--CCCCCEEECcCCC-CCCCc-c------cCCCCCCCEEECCCCc-Cccc--------CCCcc
Confidence 999999998874 2221 2689999999886 33343 2 2338899999998874 2221 12246
Q ss_pred ccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEec
Q 039954 332 KLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQ 411 (578)
Q Consensus 332 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 411 (578)
+|++|++++| .+++ +| .+..+..|+....+.+.++.+|. ..++|++|++++|. ++.+| .+..+++|++|+++
T Consensus 174 ~L~~L~L~~n-~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~n~-l~~lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 174 SLEFIAAGNN-QLEE-LP-ELQNLPFLTAIYADNNSLKKLPD---LPLSLESIVAGNNI-LEELP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp TCCEEECCSS-CCSS-CC-CCTTCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECC
T ss_pred cccEEECcCC-cCCc-Cc-cccCCCCCCEEECCCCcCCcCCC---CcCcccEEECcCCc-CCccc-ccCCCCCCCEEECC
Confidence 8999999998 7774 55 45555555544444455555553 23589999999984 45777 48889999999999
Q ss_pred cCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccC---C
Q 039954 412 KCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHR---F 487 (578)
Q Consensus 412 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~---l 487 (578)
+|... .+|.. +++|+.|++++|.. +.+|.. +++|++|++++ .+..++ .++++++.+.+..+.+.+ +
T Consensus 246 ~N~l~-~l~~~---~~~L~~L~l~~N~l-~~l~~~---~~~L~~L~ls~N~l~~l~--~~~~~L~~L~l~~N~l~~i~~~ 315 (454)
T 1jl5_A 246 NNLLK-TLPDL---PPSLEALNVRDNYL-TDLPEL---PQSLTFLDVSENIFSGLS--ELPPNLYYLNASSNEIRSLCDL 315 (454)
T ss_dssp SSCCS-SCCSC---CTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSEES--CCCTTCCEEECCSSCCSEECCC
T ss_pred CCcCC-ccccc---ccccCEEECCCCcc-cccCcc---cCcCCEEECcCCccCccc--CcCCcCCEEECcCCcCCcccCC
Confidence 87544 45542 47899999999874 446543 47899999998 777665 345788888886655443 3
Q ss_pred -CcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccccCCCCCcceEEeccCCCCcccC
Q 039954 488 -SSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQLYNCPKLKYFP 563 (578)
Q Consensus 488 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~ 563 (578)
++|+.|++++ +.+..+|. .+++|++|++++| .++.+|. .+++|++|++++ ++++.+|
T Consensus 316 ~~~L~~L~Ls~--N~l~~lp~------------~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~-N~l~~l~ 373 (454)
T 1jl5_A 316 PPSLEELNVSN--NKLIELPA------------LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEY-NPLREFP 373 (454)
T ss_dssp CTTCCEEECCS--SCCSCCCC------------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCS-SCCSSCC
T ss_pred cCcCCEEECCC--Cccccccc------------cCCcCCEEECCCC-ccccccc---hhhhccEEECCC-CCCCcCC
Confidence 5899999988 45666664 3589999999995 7888885 578999999998 6777754
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=2.7e-26 Score=229.69 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=43.6
Q ss_pred ccCcccEEEecCCCCCccCCc-ccccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhHHHhccccCccc
Q 039954 87 KLQRLRVFSLRGYRIPELPDS-VGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHL 164 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 164 (578)
.++++++|+++++.++.+|.. +..+++|++|++++|.++.++ ..+..+++|++|++++|......|..++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 344555555555555555433 345555555555555555444 245555555555555553333333345555555555
Q ss_pred ccCCCC
Q 039954 165 KNSNTK 170 (578)
Q Consensus 165 ~l~~~~ 170 (578)
++++|.
T Consensus 123 ~L~~n~ 128 (390)
T 3o6n_A 123 VLERND 128 (390)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 555555
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.5e-25 Score=225.93 Aligned_cols=310 Identities=18% Similarity=0.116 Sum_probs=223.0
Q ss_pred cCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCccccccccc
Q 039954 53 GDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVN 132 (578)
Q Consensus 53 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~ 132 (578)
..+.++++|++|.+.+. .+ ..+| ++..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++
T Consensus 36 ~~~~~l~~L~~L~Ls~n------~l-~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNS------SI-TDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp EEHHHHTTCCEEECCSS------CC-CCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred cChhHcCCCCEEEccCC------Cc-ccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC
Confidence 45678899999965542 22 2344 6779999999999999998885 889999999999999998886 88
Q ss_pred CcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCcccccccccccc
Q 039954 133 KLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRG 212 (578)
Q Consensus 133 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~ 212 (578)
.+++|++|++++|. +..+| ++.+++|++|++++|. ++.++ ++.+++|+.|.......
T Consensus 104 ~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~----------------- 160 (457)
T 3bz5_A 104 PLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKK----------------- 160 (457)
T ss_dssp TCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSC-----------------
T ss_pred CCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCc-----------------
Confidence 99999999999994 44454 8899999999999998 45553 77777777773211100
Q ss_pred ceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccc
Q 039954 213 ALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEF 292 (578)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 292 (578)
+. .+ .+ ..+++|+.|++++|.+.+ ++ +..+++|+.|++++|.. +.++
T Consensus 161 ---------~~--------------~~--~~--~~l~~L~~L~ls~n~l~~-l~-l~~l~~L~~L~l~~N~l-~~~~--- 207 (457)
T 3bz5_A 161 ---------IT--------------KL--DV--TPQTQLTTLDCSFNKITE-LD-VSQNKLLNRLNCDTNNI-TKLD--- 207 (457)
T ss_dssp ---------CC--------------CC--CC--TTCTTCCEEECCSSCCCC-CC-CTTCTTCCEEECCSSCC-SCCC---
T ss_pred ---------cc--------------cc--cc--ccCCcCCEEECCCCccce-ec-cccCCCCCEEECcCCcC-Ceec---
Confidence 00 00 01 127789999999998876 34 77888999999988763 2221
Q ss_pred cCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHH
Q 039954 293 YGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIA 372 (578)
Q Consensus 293 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~ 372 (578)
...+++|+.|+++++.-- . .+ ++.+++|++|++++| .+++..+..+++++.|.+
T Consensus 208 -----l~~l~~L~~L~Ls~N~l~-~-----ip--~~~l~~L~~L~l~~N-~l~~~~~~~l~~L~~L~l------------ 261 (457)
T 3bz5_A 208 -----LNQNIQLTFLDCSSNKLT-E-----ID--VTPLTQLTYFDCSVN-PLTELDVSTLSKLTTLHC------------ 261 (457)
T ss_dssp -----CTTCTTCSEEECCSSCCS-C-----CC--CTTCTTCSEEECCSS-CCSCCCCTTCTTCCEEEC------------
T ss_pred -----cccCCCCCEEECcCCccc-c-----cC--ccccCCCCEEEeeCC-cCCCcCHHHCCCCCEEec------------
Confidence 233788999999887422 2 11 567899999999998 787655556677766542
Q ss_pred HhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCC--------CcCCCCccEEEeCcCCCCCccc
Q 039954 373 ERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEG--------GLPCAKLTRLTILDCKRLEALP 444 (578)
Q Consensus 373 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~ 444 (578)
+..+|+.|++++|.....+| +..+++|++|++++|...+.+|.. +..+++|+.|++++|...+ ++
T Consensus 262 ----~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~ 334 (457)
T 3bz5_A 262 ----IQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD 334 (457)
T ss_dssp ----TTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC
T ss_pred ----cCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc
Confidence 22367888888887777765 457788888888888776666531 3345677778887776444 42
Q ss_pred cccCCCCCccEEEecC-CcCCc
Q 039954 445 KGLHNLTSLQELTIGG-ELPSL 465 (578)
Q Consensus 445 ~~~~~l~~L~~L~l~~-~l~~l 465 (578)
+.++++|+.|++++ ++..+
T Consensus 335 --l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 335 --VSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp --CTTCTTCSEEECCSSCCCBC
T ss_pred --cccCCcCcEEECCCCCCCCc
Confidence 77788888888877 66544
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=6.4e-26 Score=233.40 Aligned_cols=291 Identities=17% Similarity=0.158 Sum_probs=200.8
Q ss_pred ccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCcc-CCcccccccccEEeccCCCcccccc-cccCcCC
Q 039954 59 QHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLPE-SVNKLYN 136 (578)
Q Consensus 59 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~ 136 (578)
++++.|.+.+ |.+....+..|.++++|++|++++|.++.+ |..|.++++|++|++++|.++.+|. .+.++++
T Consensus 32 ~~l~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGK------NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECCS------SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCcEEECCC------CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 5788885543 344444456677999999999999999887 7899999999999999999999985 4689999
Q ss_pred ccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceee
Q 039954 137 LHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEI 216 (578)
Q Consensus 137 L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~ 216 (578)
|++|++++|......|..+..+++|++|++++|.+....+..++.
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------- 150 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG----------------------------------- 150 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTT-----------------------------------
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccC-----------------------------------
Confidence 999999999766666778999999999999999833222222221
Q ss_pred ccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCC
Q 039954 217 SKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGN 295 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 295 (578)
+++|+.|++++|.+.+..+ .+..+++|+.|++++|... .+...
T Consensus 151 -------------------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~---- 194 (477)
T 2id5_A 151 -------------------------------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDY---- 194 (477)
T ss_dssp -------------------------------CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-EECTT----
T ss_pred -------------------------------CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-EeChh----
Confidence 6688888999998876544 5788999999999987522 11110
Q ss_pred CCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCC---CCcceEEEEecCCchhhHH
Q 039954 296 DAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLP---ALEKLSLYVYGCSKLESIA 372 (578)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~l~~L~l~~~~~~~l~~i~ 372 (578)
.+..+++|++|++++|..+. .+|.... +|+.|.+.. +.++.+|
T Consensus 195 ------------------------------~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~---n~l~~~~ 240 (477)
T 2id5_A 195 ------------------------------SFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITH---CNLTAVP 240 (477)
T ss_dssp ------------------------------CSCSCTTCCEEEEECCTTCC-EECTTTTTTCCCSEEEEES---SCCCSCC
T ss_pred ------------------------------hcccCcccceeeCCCCcccc-ccCcccccCccccEEECcC---CcccccC
Confidence 05668899999999985444 4443322 444433322 2233333
Q ss_pred -HhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCC
Q 039954 373 -ERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLT 451 (578)
Q Consensus 373 -~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 451 (578)
..+..+++|++|++++|......+..+..+++|++|++++|......|..+..+++|+.|++++|......+..+..++
T Consensus 241 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 320 (477)
T 2id5_A 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320 (477)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGG
T ss_pred HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCc
Confidence 2456666777777776654433344566666777777766655555555566666777777766654443344556666
Q ss_pred CccEEEecC
Q 039954 452 SLQELTIGG 460 (578)
Q Consensus 452 ~L~~L~l~~ 460 (578)
+|++|++++
T Consensus 321 ~L~~L~l~~ 329 (477)
T 2id5_A 321 NLETLILDS 329 (477)
T ss_dssp GCCEEECCS
T ss_pred ccCEEEccC
Confidence 667776666
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.7e-25 Score=220.32 Aligned_cols=124 Identities=19% Similarity=0.321 Sum_probs=93.5
Q ss_pred ccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccc
Q 039954 52 FGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESV 131 (578)
Q Consensus 52 ~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~ 131 (578)
...+..+++|++|.+.+.. ...++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .+
T Consensus 37 ~~~~~~l~~L~~L~l~~~~-------i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~ 106 (347)
T 4fmz_A 37 VVTQEELESITKLVVAGEK-------VASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-AL 106 (347)
T ss_dssp EECHHHHTTCSEEECCSSC-------CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred cccchhcccccEEEEeCCc-------cccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HH
Confidence 4556678888888665432 23333 46789999999999999988866 889999999999999988886 58
Q ss_pred cCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCccccccc
Q 039954 132 NKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (578)
Q Consensus 132 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 188 (578)
..+++|++|++++|. +..++. +..+++|+.|++++|.....++ .+..+++|+.|
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L 160 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL 160 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEE
T ss_pred cCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEE
Confidence 899999999999984 445555 8889999999999987444433 35555555555
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-25 Score=235.33 Aligned_cols=302 Identities=16% Similarity=0.141 Sum_probs=169.2
Q ss_pred ccCcccEEEecCCCCCccCCc-ccccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhHHHhccccCccc
Q 039954 87 KLQRLRVFSLRGYRIPELPDS-VGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHL 164 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 164 (578)
.+.++++|+++++.++.+|.. +..+++|++|++++|.+..+| ..++.+++|++|++++|......|..++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 345555566655555555433 355555666666655555544 245555566666665554333333344555666666
Q ss_pred ccCCCCcccccCCC-CCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCc
Q 039954 165 KNSNTKSLEEMPVG-IGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWL 243 (578)
Q Consensus 165 ~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (578)
++++|. +..+|.. ++.+++|+.|..... .+. ...|.++
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N------------------------~l~----------------~~~~~~~ 167 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNN------------------------NLE----------------RIEDDTF 167 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSS------------------------CCC----------------BCCTTTT
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCC------------------------cCC----------------CCChhhh
Confidence 666555 3334333 234433333311000 000 0011111
Q ss_pred CCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCC
Q 039954 244 GDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGS 323 (578)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 323 (578)
. .+++|+.|++++|.+.+. .+..+++|+.|++++|.. ..++ ..++|+.|+++++..- ...
T Consensus 168 ~--~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~l-~~l~----------~~~~L~~L~ls~n~l~-~~~---- 227 (597)
T 3oja_B 168 Q--ATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLL-STLA----------IPIAVEELDASHNSIN-VVR---- 227 (597)
T ss_dssp T--TCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSCC-SEEE----------CCTTCSEEECCSSCCC-EEE----
T ss_pred h--cCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCcc-cccc----------CCchhheeeccCCccc-ccc----
Confidence 1 155666667777666542 244566777777766542 1111 1345566666554311 110
Q ss_pred CCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCC
Q 039954 324 SQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLG 403 (578)
Q Consensus 324 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 403 (578)
....++|+.|++++| .+++ +..+..+++|+.|++++|......|..+..++
T Consensus 228 ---~~~~~~L~~L~L~~n-~l~~-------------------------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 228 ---GPVNVELTILKLQHN-NLTD-------------------------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp ---CSCCSCCCEEECCSS-CCCC-------------------------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ---cccCCCCCEEECCCC-CCCC-------------------------ChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 111245666666555 3331 12355677888888888866655677788888
Q ss_pred CcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccc
Q 039954 404 QLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGR 482 (578)
Q Consensus 404 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~ 482 (578)
+|++|++++|.. ..+|.....+++|+.|++++|.. +.+|..+..+++|++|++++ .+..++
T Consensus 279 ~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~l~~L~~L~L~~N~l~~~~---------------- 340 (597)
T 3oja_B 279 RLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLK---------------- 340 (597)
T ss_dssp SCCEEECTTSCC-CEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSCCCCCC----------------
T ss_pred CCCEEECCCCCC-CCCCcccccCCCCcEEECCCCCC-CccCcccccCCCCCEEECCCCCCCCcC----------------
Confidence 888888888654 44666666788888888888864 46777777788888888888 665553
Q ss_pred cccCCCcccEEEEee
Q 039954 483 GFHRFSSLRQLAIIN 497 (578)
Q Consensus 483 ~~~~l~~L~~L~l~~ 497 (578)
+..+++|+.|++++
T Consensus 341 -~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 341 -LSTHHTLKNLTLSH 354 (597)
T ss_dssp -CCTTCCCSEEECCS
T ss_pred -hhhcCCCCEEEeeC
Confidence 45567788888877
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=7.9e-25 Score=219.01 Aligned_cols=303 Identities=16% Similarity=0.127 Sum_probs=188.2
Q ss_pred ccccccEEeccCCCccccccc-ccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCccccccc
Q 039954 110 DLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (578)
Q Consensus 110 ~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 188 (578)
.+.++++|+++++.++.+|.. +..+++|++|++++|......+..++.+++|++|++++|.+....|..++++++|+.|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 578999999999999999865 5889999999999996544444578999999999999999444445557787777777
Q ss_pred CcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCC-cCCCCCCceeEEEeccCCCCCCCC-
Q 039954 189 CNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAW-LGDSSFSNLVTLKFKNCDMCTALP- 266 (578)
Q Consensus 189 ~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~- 266 (578)
..... .+ ..+|.. +. .+++|+.|++++|.+.+..+
T Consensus 123 ~L~~n------------------------~l-----------------~~l~~~~~~--~l~~L~~L~L~~n~l~~~~~~ 159 (390)
T 3o6n_A 123 VLERN------------------------DL-----------------SSLPRGIFH--NTPKLTTLSMSNNNLERIEDD 159 (390)
T ss_dssp ECCSS------------------------CC-----------------CCCCTTTTT--TCTTCCEEECCSSCCCBCCTT
T ss_pred ECCCC------------------------cc-----------------CcCCHHHhc--CCCCCcEEECCCCccCccChh
Confidence 22111 00 012211 12 26778888888887765544
Q ss_pred CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeeccccccccc
Q 039954 267 SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQG 346 (578)
Q Consensus 267 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 346 (578)
.+..+++|++|++++|.. +..+ ...+++|+.|++.++.. .. +...++|++|++++| .+.
T Consensus 160 ~~~~l~~L~~L~l~~n~l-~~~~--------~~~l~~L~~L~l~~n~l-~~---------~~~~~~L~~L~l~~n-~l~- 218 (390)
T 3o6n_A 160 TFQATTSLQNLQLSSNRL-THVD--------LSLIPSLFHANVSYNLL-ST---------LAIPIAVEELDASHN-SIN- 218 (390)
T ss_dssp TTSSCTTCCEEECCSSCC-SBCC--------GGGCTTCSEEECCSSCC-SE---------EECCSSCSEEECCSS-CCC-
T ss_pred hccCCCCCCEEECCCCcC-Cccc--------cccccccceeecccccc-cc---------cCCCCcceEEECCCC-eee-
Confidence 567777888888877652 2221 12255566666554421 00 222345556666555 333
Q ss_pred CCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCC
Q 039954 347 TFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPC 426 (578)
Q Consensus 347 ~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 426 (578)
.+|. ..+++|+.|++++|.. +.. ..+..+++|++|++++|...+..|..+..+
T Consensus 219 ~~~~-------------------------~~~~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 219 VVRG-------------------------PVNVELTILKLQHNNL-TDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp EEEC-------------------------CCCSSCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred eccc-------------------------cccccccEEECCCCCC-ccc-HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 1111 1123677777777643 333 355667777777777766555556566667
Q ss_pred CCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCcccc
Q 039954 427 AKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSF 505 (578)
Q Consensus 427 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 505 (578)
++|+.|++++|. ++.++..+..+++|++|++++ .+..++. .+..+++|+.|++++ +.+..+
T Consensus 272 ~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------~~~~l~~L~~L~L~~--N~i~~~ 333 (390)
T 3o6n_A 272 QRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVER---------------NQPQFDRLENLYLDH--NSIVTL 333 (390)
T ss_dssp SSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCCCCGG---------------GHHHHTTCSEEECCS--SCCCCC
T ss_pred ccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcceecCc---------------cccccCcCCEEECCC--Ccccee
Confidence 777777777765 444555566677777777776 5554442 245566777777776 334444
Q ss_pred CCCCCCCCCCCCCCCCccccEEEeccC
Q 039954 506 PPKADDKGSGTALPLPASLTSLMINNF 532 (578)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~L~~L~l~~~ 532 (578)
+. ..+++|++|+++++
T Consensus 334 ~~-----------~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 334 KL-----------STHHTLKNLTLSHN 349 (390)
T ss_dssp CC-----------CTTCCCSEEECCSS
T ss_pred Cc-----------hhhccCCEEEcCCC
Confidence 31 34566777777764
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=7e-24 Score=207.10 Aligned_cols=293 Identities=19% Similarity=0.193 Sum_probs=187.8
Q ss_pred cccEEEecCCCCCccCCcccccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCC
Q 039954 90 RLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSN 168 (578)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~ 168 (578)
.+++++++++.++.+|..+. ++|++|++++|.++.++ ..+.++++|++|++++|......|..++.+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 68999999999998887764 68999999999988885 5788999999999999865555577788999999999998
Q ss_pred CCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCC
Q 039954 169 TKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSF 248 (578)
Q Consensus 169 ~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (578)
|. ++.+|..+ +
T Consensus 112 n~-l~~l~~~~--------------------------------------------------------------------~ 122 (332)
T 2ft3_A 112 NH-LVEIPPNL--------------------------------------------------------------------P 122 (332)
T ss_dssp SC-CCSCCSSC--------------------------------------------------------------------C
T ss_pred Cc-CCccCccc--------------------------------------------------------------------c
Confidence 87 44444322 2
Q ss_pred CceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCcc
Q 039954 249 SNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGV 327 (578)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 327 (578)
++|+.|++++|.+....+ .+..+++|++|++++|.... .+. . +..+
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~-----------------------------~---~~~~ 169 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-SGF-----------------------------E---PGAF 169 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG-GGS-----------------------------C---TTSS
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc-CCC-----------------------------C---cccc
Confidence 467777788877765444 46777888888887765211 000 0 0003
Q ss_pred ccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcce
Q 039954 328 ERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQE 407 (578)
Q Consensus 328 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 407 (578)
..+ +|++|++++| .++ .+|..+. ++|++|++++|......+..+..+++|++
T Consensus 170 ~~l-~L~~L~l~~n-~l~-~l~~~~~-------------------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 221 (332)
T 2ft3_A 170 DGL-KLNYLRISEA-KLT-GIPKDLP-------------------------ETLNELHLDHNKIQAIELEDLLRYSKLYR 221 (332)
T ss_dssp CSC-CCSCCBCCSS-BCS-SCCSSSC-------------------------SSCSCCBCCSSCCCCCCTTSSTTCTTCSC
T ss_pred cCC-ccCEEECcCC-CCC-ccCcccc-------------------------CCCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 334 7777777777 555 3443211 26777777777544444466777777777
Q ss_pred EEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccC
Q 039954 408 IRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHR 486 (578)
Q Consensus 408 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~ 486 (578)
|++++|......+..+..+++|+.|++++|. ++.+|..+..+++|++|++++ .+..++...+
T Consensus 222 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~---------------- 284 (332)
T 2ft3_A 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF---------------- 284 (332)
T ss_dssp CBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSS----------------
T ss_pred EECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCCccChhHc----------------
Confidence 7777765554444455667777777777765 346666666666666666665 4444432211
Q ss_pred CCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCc--cccccccCCCCCcceEEeccCC
Q 039954 487 FSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNL--ERLSSSIVDLQNLTILQLYNCP 557 (578)
Q Consensus 487 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~i~~~~~~l~~L~~L~l~~c~ 557 (578)
.... .....++|+.|++.+++.. ...+.++..+++|+.+++++|.
T Consensus 285 ------------------------~~~~--~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 ------------------------CPVG--FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ------------------------SCSS--CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ------------------------cccc--cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 1000 0012456777777776533 1233467778888888887753
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=2.2e-23 Score=203.53 Aligned_cols=245 Identities=18% Similarity=0.227 Sum_probs=166.4
Q ss_pred cccEEEecCCCCCccCCcccccccccEEeccCCCcccccc-cccCcCCccEEecCCCchhHHhhHHHhccccCcccccCC
Q 039954 90 RLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSN 168 (578)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~ 168 (578)
.+++++++++.++.+|..+. ++|++|++++|.++.++. .+.++++|++|++++|......|..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 68888888888888887654 688889999888888764 678888888888888855444577788888888888888
Q ss_pred CCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCC
Q 039954 169 TKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSF 248 (578)
Q Consensus 169 ~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (578)
|. ++.+|..+ +
T Consensus 110 n~-l~~l~~~~--------------------------------------------------------------------~ 120 (330)
T 1xku_A 110 NQ-LKELPEKM--------------------------------------------------------------------P 120 (330)
T ss_dssp SC-CSBCCSSC--------------------------------------------------------------------C
T ss_pred Cc-CCccChhh--------------------------------------------------------------------c
Confidence 87 44444321 3
Q ss_pred CceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCcc
Q 039954 249 SNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGV 327 (578)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 327 (578)
++|+.|++++|.+.+..+ .+..+++|++|++++|.... .+ ..+..+
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--------------------------------~~~~~~ 167 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-SG--------------------------------IENGAF 167 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-GG--------------------------------BCTTGG
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc-cC--------------------------------cChhhc
Confidence 466777777777664443 45667777777777664210 00 000115
Q ss_pred ccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcce
Q 039954 328 ERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQE 407 (578)
Q Consensus 328 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 407 (578)
..+++|++|++++| .++ .+|..+ .++|++|++++|......+..+..+++|++
T Consensus 168 ~~l~~L~~L~l~~n-~l~-~l~~~~-------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 168 QGMKKLSYIRIADT-NIT-TIPQGL-------------------------PPSLTELHLDGNKITKVDAASLKGLNNLAK 220 (330)
T ss_dssp GGCTTCCEEECCSS-CCC-SCCSSC-------------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred cCCCCcCEEECCCC-ccc-cCCccc-------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 66778888888887 555 343321 136888888887544444667777888888
Q ss_pred EEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcc
Q 039954 408 IRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLE 466 (578)
Q Consensus 408 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~ 466 (578)
|++++|...+..+..+..+++|+.|++++|. ++.+|..+..+++|++|++++ .+..++
T Consensus 221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp EECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred EECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccC
Confidence 8888876555545566677888888888875 446676677777777777776 555554
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.2e-24 Score=227.58 Aligned_cols=302 Identities=18% Similarity=0.128 Sum_probs=221.5
Q ss_pred ccccccEEeeeccCCCCCCCCCcCchhhhc-ccCcccEEEecCCCCCccC-CcccccccccEEeccCCCcccccc-cccC
Q 039954 57 DIQHLRTFLPVMLSNSEPGYLAPSILPKLL-KLQRLRVFSLRGYRIPELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVNK 133 (578)
Q Consensus 57 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~~~~ 133 (578)
.+++++.+.+.+ .....+|..++ .+++|++|++++|.++.++ ..|+.+++|++|+|++|.++.+|. .+++
T Consensus 49 ~l~~l~~l~l~~-------~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKN-------STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESS-------CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeC-------CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 467788886543 23466777766 8999999999999998884 589999999999999999988864 5699
Q ss_pred cCCccEEecCCCchhHHhhHH-HhccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCcccccccccccc
Q 039954 134 LYNLHSLLLEDCWELEKLCAD-MGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRG 212 (578)
Q Consensus 134 l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~ 212 (578)
+++|++|++++|. +..+|.. ++.+++|++|++++|.+....|..++.+++|+.|......
T Consensus 122 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~------------------ 182 (597)
T 3oja_B 122 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR------------------ 182 (597)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC------------------
T ss_pred CCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC------------------
Confidence 9999999999995 4556655 5899999999999999655556679999999988322110
Q ss_pred ceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccc
Q 039954 213 ALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEF 292 (578)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 292 (578)
+.. ++ + ..+++|+.|++++|.+.+ +...++|+.|++++|.. ..++..
T Consensus 183 ------l~~-----------------~~--~--~~l~~L~~L~l~~n~l~~----l~~~~~L~~L~ls~n~l-~~~~~~- 229 (597)
T 3oja_B 183 ------LTH-----------------VD--L--SLIPSLFHANVSYNLLST----LAIPIAVEELDASHNSI-NVVRGP- 229 (597)
T ss_dssp ------CSB-----------------CC--G--GGCTTCSEEECCSSCCSE----EECCTTCSEEECCSSCC-CEEECS-
T ss_pred ------CCC-----------------cC--h--hhhhhhhhhhcccCcccc----ccCCchhheeeccCCcc-cccccc-
Confidence 000 00 0 127789999999887753 34556899999988863 333221
Q ss_pred cCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHH
Q 039954 293 YGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIA 372 (578)
Q Consensus 293 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~ 372 (578)
.+++|+.|+++++.... . ..+..+++|+.|++++| .+.+..|.
T Consensus 230 -------~~~~L~~L~L~~n~l~~-~------~~l~~l~~L~~L~Ls~N-~l~~~~~~---------------------- 272 (597)
T 3oja_B 230 -------VNVELTILKLQHNNLTD-T------AWLLNYPGLVEVDLSYN-ELEKIMYH---------------------- 272 (597)
T ss_dssp -------CCSCCCEEECCSSCCCC-C------GGGGGCTTCSEEECCSS-CCCEEESG----------------------
T ss_pred -------cCCCCCEEECCCCCCCC-C------hhhccCCCCCEEECCCC-ccCCCCHH----------------------
Confidence 25789999998875322 1 22778999999999998 66643333
Q ss_pred HhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCC
Q 039954 373 ERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTS 452 (578)
Q Consensus 373 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 452 (578)
.+.++++|+.|++++| .+..+|..+..+++|++|++++|... .+|..+..+++|+.|++++|... .++ +..+++
T Consensus 273 -~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~-~~~--~~~~~~ 346 (597)
T 3oja_B 273 -PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHT 346 (597)
T ss_dssp -GGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCC
T ss_pred -HhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC-CcC--hhhcCC
Confidence 4556667888888887 45556777777888888888886544 56666667788888888888743 333 667788
Q ss_pred ccEEEecC
Q 039954 453 LQELTIGG 460 (578)
Q Consensus 453 L~~L~l~~ 460 (578)
|+.|++++
T Consensus 347 L~~L~l~~ 354 (597)
T 3oja_B 347 LKNLTLSH 354 (597)
T ss_dssp CSEEECCS
T ss_pred CCEEEeeC
Confidence 88888887
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=3.1e-24 Score=208.46 Aligned_cols=231 Identities=20% Similarity=0.340 Sum_probs=168.2
Q ss_pred ccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCccccc
Q 039954 87 KLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKN 166 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 166 (578)
....+++|+++++.++.+|..+..+++|++|++++|.+..+|..++++++|++|++++|.. ..+|..++.+++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEEC
Confidence 4588999999999999999999999999999999999999999999999999999999954 488989999999999999
Q ss_pred CCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCC
Q 039954 167 SNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDS 246 (578)
Q Consensus 167 ~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (578)
++|...+.+|..++..... ..+ .
T Consensus 158 ~~n~~~~~~p~~~~~~~~~-------------------------------------------------------~~~--~ 180 (328)
T 4fcg_A 158 RACPELTELPEPLASTDAS-------------------------------------------------------GEH--Q 180 (328)
T ss_dssp EEETTCCCCCSCSEEEC-C-------------------------------------------------------CCE--E
T ss_pred CCCCCccccChhHhhccch-------------------------------------------------------hhh--c
Confidence 9988677777654321000 000 0
Q ss_pred CCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCC
Q 039954 247 SFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQ 325 (578)
Q Consensus 247 ~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 325 (578)
.+++|+.|++++|.+. .+| .
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~---------------------------------------------------------- 201 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPAS---------------------------------------------------------- 201 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGG----------------------------------------------------------
T ss_pred cCCCCCEEECcCCCcC-cchHh----------------------------------------------------------
Confidence 1445555555555443 111 2
Q ss_pred ccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCc
Q 039954 326 GVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQL 405 (578)
Q Consensus 326 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 405 (578)
++.+++|++|++++| .+. .+| ..+..+++|++|++++|.....+|..+..+++|
T Consensus 202 -l~~l~~L~~L~L~~N-~l~-~l~-----------------------~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 202 -IANLQNLKSLKIRNS-PLS-ALG-----------------------PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp -GGGCTTCCEEEEESS-CCC-CCC-----------------------GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred -hcCCCCCCEEEccCC-CCC-cCc-----------------------hhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 344556666666665 343 122 123445567777777777777777777777777
Q ss_pred ceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC
Q 039954 406 QEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG 460 (578)
Q Consensus 406 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 460 (578)
++|++++|...+.+|..+..+++|+.|++++|...+.+|..+.++++|+.+++..
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 7777777777777777777777888888888777777787777888888777776
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=2.4e-22 Score=196.27 Aligned_cols=282 Identities=18% Similarity=0.239 Sum_probs=172.7
Q ss_pred cccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCcc-CCcccccccccEEeccCCCcccc-cccccCcCCc
Q 039954 60 HLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTL-PESVNKLYNL 137 (578)
Q Consensus 60 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L 137 (578)
+++.+.+.+. ....+|..++ ++|++|++++|.++.+ |..+..+++|++|++++|.++.+ |..+.++++|
T Consensus 34 ~l~~l~~~~~-------~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDL-------GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECCSS-------CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred cCCEEECCCC-------CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 5777744332 2345666553 6899999999999888 56899999999999999999877 6789999999
Q ss_pred cEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCC-CCCcccccccCcceeecCCCCCccccccccccccceee
Q 039954 138 HSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEI 216 (578)
Q Consensus 138 ~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~ 216 (578)
++|++++|. +..+|..+. ++|++|++++|. ++.+|.. ++.+++|+
T Consensus 105 ~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~------------------------------ 150 (332)
T 2ft3_A 105 QKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMN------------------------------ 150 (332)
T ss_dssp CEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCC------------------------------
T ss_pred CEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCC------------------------------
Confidence 999999994 456666554 899999999998 4444432 44444444
Q ss_pred ccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCC--CCC-CCCCCCCcceeeecCcCCceecCcccc
Q 039954 217 SKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCT--ALP-SVGQLPSLTHLAVCGMSRVKRLGSEFY 293 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~ 293 (578)
.|++++|.+.. ..+ .+..+ +|++|++++|. ++.++..
T Consensus 151 ------------------------------------~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~-- 190 (332)
T 2ft3_A 151 ------------------------------------CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKD-- 190 (332)
T ss_dssp ------------------------------------EEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSS--
T ss_pred ------------------------------------EEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcc--
Confidence 44444444431 111 33333 55555555543 1112111
Q ss_pred CCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHH
Q 039954 294 GNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAE 373 (578)
Q Consensus 294 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~ 373 (578)
.+++|++|+++++.. .... +..+..+++|++|++++| .+.+..+.
T Consensus 191 ------~~~~L~~L~l~~n~i-~~~~----~~~l~~l~~L~~L~L~~N-~l~~~~~~----------------------- 235 (332)
T 2ft3_A 191 ------LPETLNELHLDHNKI-QAIE----LEDLLRYSKLYRLGLGHN-QIRMIENG----------------------- 235 (332)
T ss_dssp ------SCSSCSCCBCCSSCC-CCCC----TTSSTTCTTCSCCBCCSS-CCCCCCTT-----------------------
T ss_pred ------ccCCCCEEECCCCcC-CccC----HHHhcCCCCCCEEECCCC-cCCcCChh-----------------------
Confidence 123444444444321 1110 011556777777777776 55532221
Q ss_pred hcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcC------CCCccEEEeCcCCCC--Ccccc
Q 039954 374 RLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLP------CAKLTRLTILDCKRL--EALPK 445 (578)
Q Consensus 374 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~ 445 (578)
.+..+++|++|++++| .++.+|..+..+++|++|++++|......+..+.. .++|+.|++.+|+.. ...|.
T Consensus 236 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~ 314 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314 (332)
T ss_dssp GGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG
T ss_pred HhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc
Confidence 2344557788888877 44567777777788888888776544332222222 356777777777654 34455
Q ss_pred ccCCCCCccEEEecC
Q 039954 446 GLHNLTSLQELTIGG 460 (578)
Q Consensus 446 ~~~~l~~L~~L~l~~ 460 (578)
.+..+++|+.+++++
T Consensus 315 ~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 315 TFRCVTDRLAIQFGN 329 (332)
T ss_dssp GGTTBCCSTTEEC--
T ss_pred cccccchhhhhhccc
Confidence 566666666666654
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=3e-22 Score=195.37 Aligned_cols=104 Identities=19% Similarity=0.259 Sum_probs=68.1
Q ss_pred CchhhhcccCcccEEEecCCCCCccC-CcccccccccEEeccCCCcccc-cccccCcCCccEEecCCCchhHHhhHHHhc
Q 039954 80 SILPKLLKLQRLRVFSLRGYRIPELP-DSVGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCWELEKLCADMGN 157 (578)
Q Consensus 80 ~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~l~~ 157 (578)
.+|..+. +.|++|++++|.++.++ ..++.+++|++|++++|.++.+ |..+..+++|++|++++|. +..+|..+.
T Consensus 45 ~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~- 120 (330)
T 1xku_A 45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP- 120 (330)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC-
T ss_pred ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc-
Confidence 4444433 56788888888887774 3677888888888888887766 6677788888888888873 445555443
Q ss_pred cccCcccccCCCCcccccCCCCCCccccccc
Q 039954 158 LAKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (578)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 188 (578)
++|++|++++|.+....+..++++++|+.|
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEE
Confidence 678888888877332222224444444444
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=4.5e-24 Score=206.13 Aligned_cols=235 Identities=17% Similarity=0.238 Sum_probs=134.1
Q ss_pred CchhhhcccCcccEEEecC-CCCC-ccCCcccccccccEEeccCCCcc-cccccccCcCCccEEecCCCchhHHhhHHHh
Q 039954 80 SILPKLLKLQRLRVFSLRG-YRIP-ELPDSVGDLRYLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCWELEKLCADMG 156 (578)
Q Consensus 80 ~~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~ 156 (578)
.+|..+.++++|++|++++ |.+. .+|..++.+++|++|++++|.+. .+|..+.++++|++|++++|.....+|..++
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 4555555566666666653 4443 44555555666666666665554 4555555566666666665544435555555
Q ss_pred ccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCC
Q 039954 157 NLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGG 236 (578)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (578)
.+++|++|++++|.+.+.+|..++.
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~------------------------------------------------------- 171 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGS------------------------------------------------------- 171 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGC-------------------------------------------------------
T ss_pred cCCCCCeEECcCCcccCcCCHHHhh-------------------------------------------------------
Confidence 5555666665555533233322211
Q ss_pred CCCCCCcCCCCCC-ceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCC
Q 039954 237 TNFPAWLGDSSFS-NLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQG 314 (578)
Q Consensus 237 ~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 314 (578)
++ +|+.|++++|.+.+..+ .+..++ |++|++++|......+
T Consensus 172 -----------l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~------------------------- 214 (313)
T 1ogq_A 172 -----------FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS------------------------- 214 (313)
T ss_dssp -----------CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-------------------------
T ss_pred -----------hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-------------------------
Confidence 22 55566666665554433 333343 5566555553111100
Q ss_pred ccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcc
Q 039954 315 WEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKT 394 (578)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~ 394 (578)
..+..+++|++|++++| .+.+..| .+..+++|++|++++|.....
T Consensus 215 ----------~~~~~l~~L~~L~L~~N-~l~~~~~------------------------~~~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 215 ----------VLFGSDKNTQKIHLAKN-SLAFDLG------------------------KVGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp ----------GGCCTTSCCSEEECCSS-EECCBGG------------------------GCCCCTTCCEEECCSSCCEEC
T ss_pred ----------HHHhcCCCCCEEECCCC-ceeeecC------------------------cccccCCCCEEECcCCcccCc
Confidence 11455677777777776 4442222 134456788888888766556
Q ss_pred cccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCc
Q 039954 395 LPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEA 442 (578)
Q Consensus 395 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 442 (578)
+|..+..+++|++|++++|...+.+|.. ..+++|+.+++.+|+.+..
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 7777777888888888887766667665 6677788888877764433
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=5.1e-23 Score=199.87 Aligned_cols=112 Identities=23% Similarity=0.369 Sum_probs=94.3
Q ss_pred cccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCc
Q 039954 58 IQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNL 137 (578)
Q Consensus 58 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L 137 (578)
..+++.|.+.+.. ...+|..++++++|++|++++|.++.+|..++.+++|++|++++|.++.+|..++++++|
T Consensus 80 ~~~l~~L~L~~n~-------l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVP-------LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSC-------CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred ccceeEEEccCCC-------chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 4678888665532 347888899999999999999999999999999999999999999999999999999999
Q ss_pred cEEecCCCchhHHhhHHHhc---------cccCcccccCCCCcccccCC
Q 039954 138 HSLLLEDCWELEKLCADMGN---------LAKLHHLKNSNTKSLEEMPV 177 (578)
Q Consensus 138 ~~L~l~~~~~~~~lp~~l~~---------l~~L~~L~l~~~~~~~~lp~ 177 (578)
++|++++|.....+|..++. +++|++|++++|. ++.+|.
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~ 200 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPA 200 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCG
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchH
Confidence 99999998777888876654 7777777777776 334443
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=3.3e-24 Score=227.15 Aligned_cols=278 Identities=12% Similarity=0.028 Sum_probs=163.7
Q ss_pred CCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCcc
Q 039954 248 FSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGV 327 (578)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 327 (578)
+++|+.|++++|.+.+....+..+++|++|.+..+.......... .....+++|+.|.+.++.. ...+..+
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~------~~l~~~~ 289 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY---MNLVFPRKLCRLGLSYMGP------NEMPILF 289 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS---SCCCCCTTCCEEEETTCCT------TTGGGGG
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHH---HHhhccccccccCccccch------hHHHHHH
Confidence 567777777776655422245566777777776432111100000 1123366777777765421 1111125
Q ss_pred ccCcccceeecccccccccCC----CCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeec----------CCCCc
Q 039954 328 ERFPKLRELHILRCSKLQGTF----PEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFN----------CGNLK 393 (578)
Q Consensus 328 ~~~~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~----------~~~~~ 393 (578)
..+++|++|++++|. +++.. ...+++|+.|.+. ++..-..++....++++|++|++++ |..++
T Consensus 290 ~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 290 PFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred hhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 668889999998884 54321 2557778887765 3333344565556788999999994 55554
Q ss_pred cc--ccCCCCCCCcceEEeccCCCccccCCCCc-CCCCccEEEeCc---CCCCCc------cccccCCCCCccEEEecC-
Q 039954 394 TL--PSGLHNLGQLQEIRIQKCRNLESFPEGGL-PCAKLTRLTILD---CKRLEA------LPKGLHNLTSLQELTIGG- 460 (578)
Q Consensus 394 ~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~---~~~~~~------~~~~~~~l~~L~~L~l~~- 460 (578)
.. +.....+++|++|++..+......+..+. .+++|+.|++++ |..++. ++..+.++++|++|+++.
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 32 22234588999999966554443333333 378899999973 444554 333456788999999964
Q ss_pred --CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccc--cCCCCCCCCCCCCCCCCccccEEEeccCCCcc
Q 039954 461 --ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVS--FPPKADDKGSGTALPLPASLTSLMINNFPNLE 536 (578)
Q Consensus 461 --~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 536 (578)
.+...... .....+++|+.|++++ |. +.. ++... ..+++|++|++++|+ ++
T Consensus 447 ~~~l~~~~~~-------------~~~~~~~~L~~L~L~~-n~-l~~~~~~~~~---------~~~~~L~~L~l~~n~-l~ 501 (592)
T 3ogk_B 447 QGGLTDLGLS-------------YIGQYSPNVRWMLLGY-VG-ESDEGLMEFS---------RGCPNLQKLEMRGCC-FS 501 (592)
T ss_dssp GGGCCHHHHH-------------HHHHSCTTCCEEEECS-CC-SSHHHHHHHH---------TCCTTCCEEEEESCC-CB
T ss_pred CCCccHHHHH-------------HHHHhCccceEeeccC-CC-CCHHHHHHHH---------hcCcccCeeeccCCC-Cc
Confidence 12111100 0123478899999988 32 222 22111 345789999999986 55
Q ss_pred c--cccccCCCCCcceEEeccCCCCcccC
Q 039954 537 R--LSSSIVDLQNLTILQLYNCPKLKYFP 563 (578)
Q Consensus 537 ~--i~~~~~~l~~L~~L~l~~c~~l~~l~ 563 (578)
. ++..+..+++|++|++++|+ ++...
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~-it~~~ 529 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYR-ASMTG 529 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCB-CCTTC
T ss_pred HHHHHHHHHhcCccCeeECcCCc-CCHHH
Confidence 3 34445678899999999975 66543
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=6.6e-23 Score=197.92 Aligned_cols=254 Identities=17% Similarity=0.212 Sum_probs=198.1
Q ss_pred CCeeEEEeeeCCCCcc-ccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCC-ccCCccccc
Q 039954 34 ENLRHLSYIRGDYDGV-QRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIP-ELPDSVGDL 111 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~~-~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l 111 (578)
.+++++.+..+.+... .....+..+++|++|.+.+. +.+...+|..+.++++|++|++++|.++ .+|..+..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~-----n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE-----TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCC-----CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 5788899888877531 22467889999999977631 2456678889999999999999999997 779999999
Q ss_pred ccccEEeccCCCcc-cccccccCcCCccEEecCCCchhHHhhHHHhccc-cCcccccCCCCcccccCCCCCCcccccccC
Q 039954 112 RYLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCWELEKLCADMGNLA-KLHHLKNSNTKSLEEMPVGIGRLTCLQTLC 189 (578)
Q Consensus 112 ~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~-~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 189 (578)
++|++|++++|.+. .+|..+..+++|++|++++|.....+|..++.++ +|++|++++|.+.+.+|..++.
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-------- 196 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------- 196 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--------
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--------
Confidence 99999999999987 7899999999999999999976668899999998 9999999999854455543322
Q ss_pred cceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCC-CC
Q 039954 190 NFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALP-SV 268 (578)
Q Consensus 190 ~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l 268 (578)
++ |+.|++++|.+.+..+ .+
T Consensus 197 ----------------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 197 ----------------------------------------------------------LN-LAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp ----------------------------------------------------------CC-CSEEECCSSEEEECCGGGC
T ss_pred ----------------------------------------------------------Cc-ccEEECcCCcccCcCCHHH
Confidence 23 7778888888876665 78
Q ss_pred CCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCC
Q 039954 269 GQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTF 348 (578)
Q Consensus 269 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 348 (578)
..+++|+.|++++|......+. +..+++|++|++++| .+.+.+
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~------------------------------------~~~l~~L~~L~Ls~N-~l~~~~ 260 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGK------------------------------------VGLSKNLNGLDLRNN-RIYGTL 260 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGG------------------------------------CCCCTTCCEEECCSS-CCEECC
T ss_pred hcCCCCCEEECCCCceeeecCc------------------------------------ccccCCCCEEECcCC-cccCcC
Confidence 8999999999998862211110 345788899999888 666444
Q ss_pred CCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccC
Q 039954 349 PEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFP 420 (578)
Q Consensus 349 ~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 420 (578)
|. .+..+++|++|++++|.....+|.. ..+++|+++++.+|+.+...|
T Consensus 261 p~-----------------------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 261 PQ-----------------------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CG-----------------------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred Ch-----------------------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 43 3455668999999998766677765 788899999999987665544
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=2.9e-20 Score=188.80 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=38.3
Q ss_pred cCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCC
Q 039954 375 LDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKR 439 (578)
Q Consensus 375 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 439 (578)
+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|+.
T Consensus 227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 34445666777766654444455566667777777766544433334455566677777766653
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=2.5e-20 Score=189.98 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=37.6
Q ss_pred hcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCC
Q 039954 374 RLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCK 438 (578)
Q Consensus 374 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 438 (578)
.+.++++|+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|+
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 34455566666666665444445556666666666666654443333344556666666666665
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=7.4e-21 Score=187.32 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=50.2
Q ss_pred cCchhhhcccCcccEEEecCCCCCccCC-cccccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhHH-H
Q 039954 79 PSILPKLLKLQRLRVFSLRGYRIPELPD-SVGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCAD-M 155 (578)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~-l 155 (578)
..+|..++ ++|++|++++|.++.+|. .+.++++|++|++++|.++.++ ..+.++++|++|++++|.. ..+|.. +
T Consensus 44 ~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~ 120 (353)
T 2z80_A 44 NSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWF 120 (353)
T ss_dssp SSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHH
T ss_pred cccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHh
Confidence 34444433 356666666666665543 5666666666666666665553 3456666666666666633 333333 5
Q ss_pred hccccCcccccCCCC
Q 039954 156 GNLAKLHHLKNSNTK 170 (578)
Q Consensus 156 ~~l~~L~~L~l~~~~ 170 (578)
+.+++|++|++++|.
T Consensus 121 ~~l~~L~~L~L~~n~ 135 (353)
T 2z80_A 121 KPLSSLTFLNLLGNP 135 (353)
T ss_dssp TTCTTCSEEECTTCC
T ss_pred CCCccCCEEECCCCC
Confidence 566666666666655
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=1.8e-24 Score=221.90 Aligned_cols=191 Identities=21% Similarity=0.203 Sum_probs=98.4
Q ss_pred CCceeEEEeccCCCCCCC----C-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCC
Q 039954 248 FSNLVTLKFKNCDMCTAL----P-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHG 322 (578)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~----~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 322 (578)
.++|+.|++++|.+.... + .+..+++|++|++++|. +................++|++|+++++..-.. ....
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-~~~~ 218 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD-NCRD 218 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT-HHHH
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH-HHHH
Confidence 456888888888776532 1 34556788888888775 222111100000000133566666655531110 0000
Q ss_pred CCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHH-hcCCCCCccEEEeecCCCCcc----ccc
Q 039954 323 SSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAE-RLDNNTSLETIRIFNCGNLKT----LPS 397 (578)
Q Consensus 323 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~-~~~~l~~L~~L~l~~~~~~~~----~~~ 397 (578)
.+..+..+++|++|++++| .+.+ .....+.. ....+++|++|++++|..... ++.
T Consensus 219 l~~~l~~~~~L~~L~Ls~n-~l~~-------------------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSN-KLGD-------------------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp HHHHHHHCTTCCEEECCSS-BCHH-------------------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred HHHHHHhCCCccEEeccCC-cCCh-------------------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 0111334566666666665 3331 01112222 233577788888887743322 455
Q ss_pred CCCCCCCcceEEeccCCCccccCCC-----CcCCCCccEEEeCcCCCCCc----cccccCCCCCccEEEecC
Q 039954 398 GLHNLGQLQEIRIQKCRNLESFPEG-----GLPCAKLTRLTILDCKRLEA----LPKGLHNLTSLQELTIGG 460 (578)
Q Consensus 398 ~~~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~ 460 (578)
.+..+++|++|++++|......+.. ....++|+.|++++|..... ++..+..+++|++|++++
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC
Confidence 5556777888888776543221111 11235778888877765432 455556667777777776
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=6.2e-23 Score=217.40 Aligned_cols=102 Identities=20% Similarity=0.192 Sum_probs=53.6
Q ss_pred ccCcccEEEecCCCCCcc-CCcccc-c-ccccEEeccCCC-cc--cccccccCcCCccEEecCCCchhHH----hhHHHh
Q 039954 87 KLQRLRVFSLRGYRIPEL-PDSVGD-L-RYLRYLNLSGTE-IR--TLPESVNKLYNLHSLLLEDCWELEK----LCADMG 156 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~l-p~~i~~-l-~~L~~L~L~~~~-i~--~lp~~~~~l~~L~~L~l~~~~~~~~----lp~~l~ 156 (578)
.+++|++|+|+++.++.. +..+.. + .+|++|++++|. +. .++..+..+++|++|++++|..... ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 666677777776655432 333433 2 236777766664 22 2333334566677777766643221 444455
Q ss_pred ccccCcccccCCCCcc----cccCCCCCCccccccc
Q 039954 157 NLAKLHHLKNSNTKSL----EEMPVGIGRLTCLQTL 188 (578)
Q Consensus 157 ~l~~L~~L~l~~~~~~----~~lp~~i~~l~~L~~L 188 (578)
.+++|++|++++|... ..++..+..+++|+.|
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 6666666666666532 1233334445555555
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=2e-20 Score=180.48 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=36.8
Q ss_pred EEEecCCCCCccCCcccccccccEEeccCCCccccccc-ccCcCCccEEecCCCchhH--HhhHHHhccccCcccccCCC
Q 039954 93 VFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCWELE--KLCADMGNLAKLHHLKNSNT 169 (578)
Q Consensus 93 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~l~~~ 169 (578)
.++.+++.++.+|..+. ++|++|++++|.++.+|.. +.++++|++|++++|.... ..+..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 34455555555554332 3555555555555555433 3455555555555553221 11334445555555555555
Q ss_pred C
Q 039954 170 K 170 (578)
Q Consensus 170 ~ 170 (578)
.
T Consensus 89 ~ 89 (306)
T 2z66_A 89 G 89 (306)
T ss_dssp S
T ss_pred c
Confidence 4
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=6.4e-21 Score=187.81 Aligned_cols=84 Identities=27% Similarity=0.258 Sum_probs=43.2
Q ss_pred hcccCcccEEEecCCCCCcc-CCcccccccccEEeccCCCccccccc-ccCcCCccEEecCCCchhHHhhH--HHhcccc
Q 039954 85 LLKLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCWELEKLCA--DMGNLAK 160 (578)
Q Consensus 85 ~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~ 160 (578)
+.++++|++|++++|.++.+ |..++++++|++|++++|.++.+|.. +.++++|++|++++|. +..+|. .++.+++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTK 150 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCC
Confidence 33555555555555555544 34455555555555555555555433 4555555555555552 223333 3445555
Q ss_pred CcccccCCC
Q 039954 161 LHHLKNSNT 169 (578)
Q Consensus 161 L~~L~l~~~ 169 (578)
|++|++++|
T Consensus 151 L~~L~l~~n 159 (353)
T 2z80_A 151 LQILRVGNM 159 (353)
T ss_dssp CCEEEEEES
T ss_pred CcEEECCCC
Confidence 555555554
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=2.2e-20 Score=180.09 Aligned_cols=232 Identities=19% Similarity=0.172 Sum_probs=149.0
Q ss_pred cCchhhhcccCcccEEEecCCCCCccCCc-ccccccccEEeccCCCcccc---cccccCcCCccEEecCCCchhHHhhHH
Q 039954 79 PSILPKLLKLQRLRVFSLRGYRIPELPDS-VGDLRYLRYLNLSGTEIRTL---PESVNKLYNLHSLLLEDCWELEKLCAD 154 (578)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~~ 154 (578)
..+|..+. ++|++|++++|.++.+|.. +.++++|++|++++|.++.+ |..+..+++|++|++++|. +..+|..
T Consensus 20 ~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~ 96 (306)
T 2z66_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN 96 (306)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEE
T ss_pred ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhh
Confidence 44555443 5899999999999988754 68999999999999988755 5677789999999999994 4567777
Q ss_pred HhccccCcccccCCCCcccccCC--CCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhc
Q 039954 155 MGNLAKLHHLKNSNTKSLEEMPV--GIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEAR 232 (578)
Q Consensus 155 l~~l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 232 (578)
+..+++|++|++++|. +..++. .+..
T Consensus 97 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~--------------------------------------------------- 124 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSN-LKQMSEFSVFLS--------------------------------------------------- 124 (306)
T ss_dssp EETCTTCCEEECTTSE-EESSTTTTTTTT---------------------------------------------------
T ss_pred cCCCCCCCEEECCCCc-ccccccchhhhh---------------------------------------------------
Confidence 8889999999999987 333321 1111
Q ss_pred CCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCce-ecCccccCCCCCCCCCCCCeeeec
Q 039954 233 GYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVK-RLGSEFYGNDAPIPFPCLETLHFE 310 (578)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~ 310 (578)
+++|+.|++++|.+.+..+ .+..+++|++|++++|.... ..+.
T Consensus 125 ---------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------- 169 (306)
T 2z66_A 125 ---------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-------------------- 169 (306)
T ss_dssp ---------------CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS--------------------
T ss_pred ---------------ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh--------------------
Confidence 5566777777776655444 45666777777776664211 0110
Q ss_pred cCCCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCC
Q 039954 311 DMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCG 390 (578)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~ 390 (578)
.+..+++|++|++++| .+++..|. .+.++++|++|++++|.
T Consensus 170 ---------------~~~~l~~L~~L~Ls~n-~l~~~~~~-----------------------~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 170 ---------------IFTELRNLTFLDLSQC-QLEQLSPT-----------------------AFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp ---------------CCTTCTTCCEEECTTS-CCCEECTT-----------------------TTTTCTTCCEEECTTSC
T ss_pred ---------------HHhhCcCCCEEECCCC-CcCCcCHH-----------------------HhcCCCCCCEEECCCCc
Confidence 0445666666666666 44422222 23344466666666664
Q ss_pred CCcccccCCCCCCCcceEEeccCCCccccCCCCcCCC-CccEEEeCcCCC
Q 039954 391 NLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCA-KLTRLTILDCKR 439 (578)
Q Consensus 391 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 439 (578)
.....+..+..+++|++|++++|...+..+..+..++ +|+.|++++|+.
T Consensus 211 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 3333333455666666666666655555555555553 666666666654
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=7.5e-20 Score=191.04 Aligned_cols=254 Identities=21% Similarity=0.257 Sum_probs=135.6
Q ss_pred CcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCC
Q 039954 89 QRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSN 168 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~ 168 (578)
.++++|+++++.++.+|..+. ++|++|++++|.++.+|. .+++|++|++++|. +..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 356777777777777766554 677777777777777765 45677777777773 344554 566777777777
Q ss_pred CCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCC
Q 039954 169 TKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSF 248 (578)
Q Consensus 169 ~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (578)
|. +..+|. .+++|+.|.... +.+ ..+|. .+
T Consensus 111 N~-l~~l~~---~l~~L~~L~L~~------------------------N~l-----------------~~lp~-----~l 140 (622)
T 3g06_A 111 NP-LTHLPA---LPSGLCKLWIFG------------------------NQL-----------------TSLPV-----LP 140 (622)
T ss_dssp CC-CCCCCC---CCTTCCEEECCS------------------------SCC-----------------SCCCC-----CC
T ss_pred Cc-CCCCCC---CCCCcCEEECCC------------------------CCC-----------------CcCCC-----CC
Confidence 66 444443 222233221000 000 00111 03
Q ss_pred CceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccc
Q 039954 249 SNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVE 328 (578)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 328 (578)
++|+.|++++|.+.+. + ..+++|+.|++++|. ++.++ ..+++|+.|+++++.. .. . ..
T Consensus 141 ~~L~~L~Ls~N~l~~l-~--~~~~~L~~L~L~~N~-l~~l~---------~~~~~L~~L~Ls~N~l-~~-----l---~~ 198 (622)
T 3g06_A 141 PGLQELSVSDNQLASL-P--ALPSELCKLWAYNNQ-LTSLP---------MLPSGLQELSVSDNQL-AS-----L---PT 198 (622)
T ss_dssp TTCCEEECCSSCCSCC-C--CCCTTCCEEECCSSC-CSCCC---------CCCTTCCEEECCSSCC-SC-----C---CC
T ss_pred CCCCEEECcCCcCCCc-C--CccCCCCEEECCCCC-CCCCc---------ccCCCCcEEECCCCCC-CC-----C---CC
Confidence 4566666666655432 2 123456666665553 22221 1134455555544321 11 0 01
Q ss_pred cCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceE
Q 039954 329 RFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEI 408 (578)
Q Consensus 329 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 408 (578)
.+++|+.|++++| .++ .+|. .+++|+.|++++| .++.+| ..+++|++|
T Consensus 199 ~~~~L~~L~L~~N-~l~-~l~~--------------------------~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L 246 (622)
T 3g06_A 199 LPSELYKLWAYNN-RLT-SLPA--------------------------LPSGLKELIVSGN-RLTSLP---VLPSELKEL 246 (622)
T ss_dssp CCTTCCEEECCSS-CCS-SCCC--------------------------CCTTCCEEECCSS-CCSCCC---CCCTTCCEE
T ss_pred ccchhhEEECcCC-ccc-ccCC--------------------------CCCCCCEEEccCC-ccCcCC---CCCCcCcEE
Confidence 2345555555554 333 2222 1246777777776 344455 345677777
Q ss_pred EeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC
Q 039954 409 RIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG 460 (578)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 460 (578)
++++|. ++.+|. .+++|+.|++++|. ++.+|..+.++++|+.|++++
T Consensus 247 ~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 247 MVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp ECCSSC-CSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCS
T ss_pred ECCCCC-CCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecC
Confidence 777753 335554 45677777777765 346666677777777777776
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=1.1e-23 Score=215.98 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=99.8
Q ss_pred CCCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCc----CchhhhcccCcccEEEecCCCCCcc-CCc
Q 039954 33 SENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAP----SILPKLLKLQRLRVFSLRGYRIPEL-PDS 107 (578)
Q Consensus 33 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~----~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~ 107 (578)
+++++++.+..+.+........+..+++|++|.+.+.. +.. .++..+..+++|++|++++|.++.. +..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~------l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 75 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG------LTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 75 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC------CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC------CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH
Confidence 45677888877766553322336778888888766532 222 3455566889999999999888542 222
Q ss_pred c-cccc----cccEEeccCCCcc-----cccccccCcCCccEEecCCCchhHHhhHHHhc-----cccCcccccCCCCcc
Q 039954 108 V-GDLR----YLRYLNLSGTEIR-----TLPESVNKLYNLHSLLLEDCWELEKLCADMGN-----LAKLHHLKNSNTKSL 172 (578)
Q Consensus 108 i-~~l~----~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~-----l~~L~~L~l~~~~~~ 172 (578)
+ ..+. +|++|++++|.++ .+|..+..+++|++|++++|......+..+.. .++|++|++++|.+.
T Consensus 76 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 2 3344 6999999999876 45777888999999999998655444444432 457999999998744
Q ss_pred cc----cCCCCCCccccccc
Q 039954 173 EE----MPVGIGRLTCLQTL 188 (578)
Q Consensus 173 ~~----lp~~i~~l~~L~~L 188 (578)
.. ++..+..+++|+.|
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKEL 175 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHhhCCCCCEE
Confidence 32 23334455556655
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=2.8e-21 Score=187.08 Aligned_cols=245 Identities=12% Similarity=0.093 Sum_probs=169.9
Q ss_pred cCchhhhc-ccCcccEEEecCCCCCcc-CCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHh
Q 039954 79 PSILPKLL-KLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMG 156 (578)
Q Consensus 79 ~~~~~~~~-~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~ 156 (578)
...+..++ .+++|++|++++|.++.+ |..+..+++|++|++++|.+..++. +..+++|++|++++|. +..++
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~---- 96 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL---- 96 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----
Confidence 33444444 778999999999999877 4678899999999999999887765 8889999999999984 33333
Q ss_pred ccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCC
Q 039954 157 NLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGG 236 (578)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (578)
..++|++|++++|. +..++..
T Consensus 97 ~~~~L~~L~l~~n~-l~~~~~~---------------------------------------------------------- 117 (317)
T 3o53_A 97 VGPSIETLHAANNN-ISRVSCS---------------------------------------------------------- 117 (317)
T ss_dssp ECTTCCEEECCSSC-CSEEEEC----------------------------------------------------------
T ss_pred CCCCcCEEECCCCc-cCCcCcc----------------------------------------------------------
Confidence 44788888888887 3322110
Q ss_pred CCCCCCcCCCCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCc
Q 039954 237 TNFPAWLGDSSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGW 315 (578)
Q Consensus 237 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 315 (578)
.+++|+.|++++|.+.+..+ .+..+++|++|++++|......+..+
T Consensus 118 ----------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------------- 164 (317)
T 3o53_A 118 ----------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----------------------- 164 (317)
T ss_dssp ----------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG-----------------------
T ss_pred ----------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH-----------------------
Confidence 15678888888888876554 66778888888888775222111110
Q ss_pred cccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCccc
Q 039954 316 EDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTL 395 (578)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~ 395 (578)
...+++|++|++++| .+++ ++. ...+++|++|++++| .++.+
T Consensus 165 -----------~~~l~~L~~L~L~~N-~l~~-~~~------------------------~~~l~~L~~L~Ls~N-~l~~l 206 (317)
T 3o53_A 165 -----------AASSDTLEHLNLQYN-FIYD-VKG------------------------QVVFAKLKTLDLSSN-KLAFM 206 (317)
T ss_dssp -----------GGGTTTCCEEECTTS-CCCE-EEC------------------------CCCCTTCCEEECCSS-CCCEE
T ss_pred -----------hhccCcCCEEECCCC-cCcc-ccc------------------------ccccccCCEEECCCC-cCCcc
Confidence 234677888888777 4542 111 123557888888887 44556
Q ss_pred ccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCC-CccccccCCCCCccEEEecC
Q 039954 396 PSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRL-EALPKGLHNLTSLQELTIGG 460 (578)
Q Consensus 396 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~ 460 (578)
+..+..+++|++|++++|... .+|..+..+++|+.|++++|+.. ..++..+..+++|+.+++++
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 666777888888888886443 56777777788888888888765 46666677777777777764
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=2.2e-19 Score=187.54 Aligned_cols=265 Identities=20% Similarity=0.148 Sum_probs=185.3
Q ss_pred cccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccE
Q 039954 60 HLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHS 139 (578)
Q Consensus 60 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~ 139 (578)
++++|.+.+. . ...+|..++ ++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++
T Consensus 41 ~l~~L~ls~n------~-L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~ 105 (622)
T 3g06_A 41 GNAVLNVGES------G-LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLE 105 (622)
T ss_dssp CCCEEECCSS------C-CSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCE
T ss_pred CCcEEEecCC------C-cCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCE
Confidence 4667744332 2 236666555 788999999998888876 57889999999998888887 6788999
Q ss_pred EecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccc
Q 039954 140 LLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKL 219 (578)
Q Consensus 140 L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~ 219 (578)
|++++| .+..+|. .+++|+.|++++|. ++.+|..+ ++|+.|.... +.+
T Consensus 106 L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~l---~~L~~L~Ls~------------------------N~l 153 (622)
T 3g06_A 106 LSIFSN-PLTHLPA---LPSGLCKLWIFGNQ-LTSLPVLP---PGLQELSVSD------------------------NQL 153 (622)
T ss_dssp EEECSC-CCCCCCC---CCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCS------------------------SCC
T ss_pred EECcCC-cCCCCCC---CCCCcCEEECCCCC-CCcCCCCC---CCCCEEECcC------------------------CcC
Confidence 999888 4455555 66788999999888 66677654 4555552111 000
Q ss_pred cCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCC
Q 039954 220 ENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPI 299 (578)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 299 (578)
. .+|. .+++|+.|++++|.+.. ++ ..+++|+.|++++|. ++.++.
T Consensus 154 ~-----------------~l~~-----~~~~L~~L~L~~N~l~~-l~--~~~~~L~~L~Ls~N~-l~~l~~--------- 198 (622)
T 3g06_A 154 A-----------------SLPA-----LPSELCKLWAYNNQLTS-LP--MLPSGLQELSVSDNQ-LASLPT--------- 198 (622)
T ss_dssp S-----------------CCCC-----CCTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSC-CSCCCC---------
T ss_pred C-----------------CcCC-----ccCCCCEEECCCCCCCC-Cc--ccCCCCcEEECCCCC-CCCCCC---------
Confidence 0 1111 15689999999998875 34 567899999999886 333322
Q ss_pred CCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCC
Q 039954 300 PFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNT 379 (578)
Q Consensus 300 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~ 379 (578)
.+++|+.|.+.++.. ... ...+++|++|++++| .++ .+|. .++
T Consensus 199 ~~~~L~~L~L~~N~l-~~l--------~~~~~~L~~L~Ls~N-~L~-~lp~--------------------------~l~ 241 (622)
T 3g06_A 199 LPSELYKLWAYNNRL-TSL--------PALPSGLKELIVSGN-RLT-SLPV--------------------------LPS 241 (622)
T ss_dssp CCTTCCEEECCSSCC-SSC--------CCCCTTCCEEECCSS-CCS-CCCC--------------------------CCT
T ss_pred ccchhhEEECcCCcc-ccc--------CCCCCCCCEEEccCC-ccC-cCCC--------------------------CCC
Confidence 267899999988742 111 123589999999998 676 3442 234
Q ss_pred CccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccC
Q 039954 380 SLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLH 448 (578)
Q Consensus 380 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 448 (578)
+|+.|++++| .++.+|. .+++|++|++++|... .+|..+..+++|+.|++++|+..+..|..+.
T Consensus 242 ~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 242 ELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 7888999888 4556765 6788999999887544 7787788889999999999887666655443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.3e-19 Score=184.72 Aligned_cols=234 Identities=19% Similarity=0.232 Sum_probs=133.0
Q ss_pred cCchhhhcccCcccEEEecCCCCCcc-CCcccccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhHHHh
Q 039954 79 PSILPKLLKLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCADMG 156 (578)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~l~ 156 (578)
..+|..+. +++++|+|++|.++.+ |..|..+++|++|++++|.++.++ ..+.++++|++|++++|......+..+.
T Consensus 67 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 67 SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred CccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 34444433 5677788888777766 566777788888888877777665 5677777778888777743333333466
Q ss_pred ccccCcccccCCCCcccccCC-CCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCC
Q 039954 157 NLAKLHHLKNSNTKSLEEMPV-GIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYG 235 (578)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 235 (578)
.+++|++|++++|. ++.+|. .+.++++|+.|..... ..+ ..+
T Consensus 145 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~--------------~~l------------~~i---------- 187 (452)
T 3zyi_A 145 YLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGEL--------------KKL------------EYI---------- 187 (452)
T ss_dssp SCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCC--------------TTC------------CEE----------
T ss_pred ccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCC--------------CCc------------ccc----------
Confidence 77777777777777 334433 4555555555521100 000 000
Q ss_pred CCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCc
Q 039954 236 GTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGW 315 (578)
Q Consensus 236 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 315 (578)
-+..+. .+++|+.|++++|.+.+ ++.+..+++|++|++++|... .+..
T Consensus 188 ---~~~~~~--~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~-~~~~------------------------- 235 (452)
T 3zyi_A 188 ---SEGAFE--GLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFP-EIRP------------------------- 235 (452)
T ss_dssp ---CTTTTT--TCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCS-EECG-------------------------
T ss_pred ---Chhhcc--CCCCCCEEECCCCcccc-cccccccccccEEECcCCcCc-ccCc-------------------------
Confidence 000111 14566666666665542 344555555555555555311 1100
Q ss_pred cccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCccc
Q 039954 316 EDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTL 395 (578)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~ 395 (578)
..+..+++|++|++++| .+.+..+. .+.++++|+.|+|++|......
T Consensus 236 ---------~~~~~l~~L~~L~L~~n-~l~~~~~~-----------------------~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 236 ---------GSFHGLSSLKKLWVMNS-QVSLIERN-----------------------AFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp ---------GGGTTCTTCCEEECTTS-CCCEECTT-----------------------TTTTCTTCCEEECCSSCCSCCC
T ss_pred ---------ccccCccCCCEEEeCCC-cCceECHH-----------------------HhcCCCCCCEEECCCCcCCccC
Confidence 01455677777777776 45432222 2445567888888887444333
Q ss_pred ccCCCCCCCcceEEeccCCCc
Q 039954 396 PSGLHNLGQLQEIRIQKCRNL 416 (578)
Q Consensus 396 ~~~~~~l~~L~~L~l~~~~~~ 416 (578)
+..+..+++|++|++++|+..
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCEE
T ss_pred hHHhccccCCCEEEccCCCcC
Confidence 445667788888888877543
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.9e-19 Score=182.80 Aligned_cols=233 Identities=22% Similarity=0.273 Sum_probs=134.2
Q ss_pred cCchhhhcccCcccEEEecCCCCCcc-CCcccccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhH-HH
Q 039954 79 PSILPKLLKLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCA-DM 155 (578)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~l 155 (578)
..+|..+. +++++|+|++|.++.+ +..|..+++|++|+|++|.+..++ ..+.++++|++|++++|.. ..+|. .+
T Consensus 56 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~ 132 (440)
T 3zyj_A 56 REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAF 132 (440)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC-SSCCTTTS
T ss_pred CcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC-CeeCHhHh
Confidence 44454443 5677788888877766 466777888888888887777665 5567777788888877743 33433 46
Q ss_pred hccccCcccccCCCCcccccCC-CCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCC
Q 039954 156 GNLAKLHHLKNSNTKSLEEMPV-GIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGY 234 (578)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 234 (578)
..+++|++|++++|. ++.+|. .+.++++|+.|...... .+..+
T Consensus 133 ~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~--------------------------~l~~i--------- 176 (440)
T 3zyj_A 133 VYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELK--------------------------RLSYI--------- 176 (440)
T ss_dssp CSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCT--------------------------TCCEE---------
T ss_pred hccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCC--------------------------Cccee---------
Confidence 777777777777777 333333 45555555555211000 00000
Q ss_pred CCCCCCCCcCCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCC
Q 039954 235 GGTNFPAWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQG 314 (578)
Q Consensus 235 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 314 (578)
.+..+. .+++|+.|++++|.+. .++.+..+++|++|++++|. ++.+.
T Consensus 177 ----~~~~~~--~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~-l~~~~------------------------- 223 (440)
T 3zyj_A 177 ----SEGAFE--GLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNH-LSAIR------------------------- 223 (440)
T ss_dssp ----CTTTTT--TCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSC-CCEEC-------------------------
T ss_pred ----Ccchhh--cccccCeecCCCCcCc-cccccCCCcccCEEECCCCc-cCccC-------------------------
Confidence 000111 1455666666666554 33445555555555555543 11111
Q ss_pred ccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcc
Q 039954 315 WEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKT 394 (578)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~ 394 (578)
. ..+..+++|++|++++| .+++..+. .+.++++|++|+|++|.....
T Consensus 224 -----~----~~~~~l~~L~~L~L~~n-~l~~~~~~-----------------------~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 224 -----P----GSFQGLMHLQKLWMIQS-QIQVIERN-----------------------AFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp -----T----TTTTTCTTCCEEECTTC-CCCEECTT-----------------------SSTTCTTCCEEECTTSCCCCC
T ss_pred -----h----hhhccCccCCEEECCCC-ceeEEChh-----------------------hhcCCCCCCEEECCCCCCCcc
Confidence 0 01455677777777776 45432222 344556788888888754433
Q ss_pred cccCCCCCCCcceEEeccCCCc
Q 039954 395 LPSGLHNLGQLQEIRIQKCRNL 416 (578)
Q Consensus 395 ~~~~~~~l~~L~~L~l~~~~~~ 416 (578)
.+..+..+++|++|++++|+..
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhHhccccCCCEEEcCCCCcc
Confidence 3455667788888888887643
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=3.5e-20 Score=189.76 Aligned_cols=236 Identities=11% Similarity=0.088 Sum_probs=168.4
Q ss_pred ccCcccEEEecCCCCCcc-CCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccc
Q 039954 87 KLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLK 165 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 165 (578)
.+++|++|++++|.++.+ |..|+.+++|++|+|++|.+..+++ +..+++|++|++++|. +..+| ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----CCCCcCEEE
Confidence 344899999999999877 5789999999999999999887765 8899999999999994 34333 348899999
Q ss_pred cCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCC
Q 039954 166 NSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGD 245 (578)
Q Consensus 166 l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (578)
+++|. +..++..
T Consensus 106 L~~N~-l~~~~~~------------------------------------------------------------------- 117 (487)
T 3oja_A 106 AANNN-ISRVSCS------------------------------------------------------------------- 117 (487)
T ss_dssp CCSSC-CCCEEEC-------------------------------------------------------------------
T ss_pred CcCCc-CCCCCcc-------------------------------------------------------------------
Confidence 99887 3322110
Q ss_pred CCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCC
Q 039954 246 SSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSS 324 (578)
Q Consensus 246 ~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 324 (578)
.+++|+.|++++|.+.+..+ .+..+++|++|++++|......+..+
T Consensus 118 -~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-------------------------------- 164 (487)
T 3oja_A 118 -RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-------------------------------- 164 (487)
T ss_dssp -CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG--------------------------------
T ss_pred -ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH--------------------------------
Confidence 15678888888888877655 66778888888888775322221111
Q ss_pred CccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCC
Q 039954 325 QGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQ 404 (578)
Q Consensus 325 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 404 (578)
...+++|++|++++| .+++. + ....+++|+.|++++|. ++.+|..+..+++
T Consensus 165 --~~~l~~L~~L~Ls~N-~l~~~-~------------------------~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~ 215 (487)
T 3oja_A 165 --AASSDTLEHLNLQYN-FIYDV-K------------------------GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAG 215 (487)
T ss_dssp --GGGTTTCCEEECTTS-CCCEE-E------------------------CCCCCTTCCEEECCSSC-CCEECGGGGGGTT
T ss_pred --hhhCCcccEEecCCC-ccccc-c------------------------ccccCCCCCEEECCCCC-CCCCCHhHcCCCC
Confidence 225677888888887 45521 1 11235578888888874 4556666777888
Q ss_pred cceEEeccCCCccccCCCCcCCCCccEEEeCcCCCC-CccccccCCCCCccEEEec
Q 039954 405 LQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRL-EALPKGLHNLTSLQELTIG 459 (578)
Q Consensus 405 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~ 459 (578)
|++|++++|... .+|..+..+++|+.|++++|+.. ..+|..+..+++|+.+++.
T Consensus 216 L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 888888886544 57777777788888888888755 3666667777777777775
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=2.8e-21 Score=204.83 Aligned_cols=325 Identities=17% Similarity=0.169 Sum_probs=177.4
Q ss_pred hhhhc-ccCcccEEEecCCC-CCcc---CCc------------ccccccccEEeccCCCcccc-ccccc-CcCCccEEec
Q 039954 82 LPKLL-KLQRLRVFSLRGYR-IPEL---PDS------------VGDLRYLRYLNLSGTEIRTL-PESVN-KLYNLHSLLL 142 (578)
Q Consensus 82 ~~~~~-~l~~Lr~L~L~~~~-i~~l---p~~------------i~~l~~L~~L~L~~~~i~~l-p~~~~-~l~~L~~L~l 142 (578)
|..+. ++++|+.|+++++. +..+ |.. ...+++|++|++++|.+... +..+. .+++|++|++
T Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L 137 (594)
T 2p1m_B 58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC
Confidence 34444 78888888888865 2211 211 24677899999998887532 34443 6889999999
Q ss_pred CCCchhH--HhhHHHhccccCcccccCCCCccccc----CCCCCCcccccccCcceeecCCCCCccccccccccccceee
Q 039954 143 EDCWELE--KLCADMGNLAKLHHLKNSNTKSLEEM----PVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEI 216 (578)
Q Consensus 143 ~~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~l----p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~ 216 (578)
++|.... .++..+..+++|++|++++|.+.... +.....+++|+.|...... .......+..
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~---------- 205 (594)
T 2p1m_B 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALER---------- 205 (594)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHH----------
T ss_pred CCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHH----------
Confidence 9884333 25565668899999999988733322 2223345566655222111 0000000000
Q ss_pred ccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCC------ceecC
Q 039954 217 SKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSR------VKRLG 289 (578)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~------~~~~~ 289 (578)
. + ..+++|+.|++++|...+.++ .+..+++|++|.+.++.. +..+.
T Consensus 206 -----------l--------------~--~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 206 -----------L--------------V--TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp -----------H--------------H--HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred -----------H--------------H--HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 0 0 016789999999884333333 456778899998766532 01111
Q ss_pred ccccCCCCCCCCCCCCeee-eccCCCccccccCCCCCccccCcccceeecccccccccC----CCCCCCCCcceEEEEec
Q 039954 290 SEFYGNDAPIPFPCLETLH-FEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGT----FPEHLPALEKLSLYVYG 364 (578)
Q Consensus 290 ~~~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~l~~~~ 364 (578)
..+ ..+++|+.+. +.+.. . ...+.....+++|++|++++|. +++. +...+++|+.|.+. +
T Consensus 259 ~~l------~~~~~L~~Ls~~~~~~---~---~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~--~ 323 (594)
T 2p1m_B 259 VAL------SGCKELRCLSGFWDAV---P---AYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVL--D 323 (594)
T ss_dssp HHH------HTCTTCCEEECCBTCC---G---GGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEE--G
T ss_pred HHH------hcCCCcccccCCcccc---h---hhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCc--C
Confidence 111 1256666662 22211 1 1111113457888888888874 5432 12356677775554 4
Q ss_pred CCchhhHHHhcCCCCCccEEEeecC--------CCCccc--ccCCCCCCCcceEEeccCCCccccCCCCc-CCCCccEEE
Q 039954 365 CSKLESIAERLDNNTSLETIRIFNC--------GNLKTL--PSGLHNLGQLQEIRIQKCRNLESFPEGGL-PCAKLTRLT 433 (578)
Q Consensus 365 ~~~l~~i~~~~~~l~~L~~L~l~~~--------~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~ 433 (578)
|..-..++.....+++|++|++++| ..++.. ......+++|++|.+.++.........+. .+++|+.|+
T Consensus 324 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~ 403 (594)
T 2p1m_B 324 YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFR 403 (594)
T ss_dssp GGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeE
Confidence 4222234444445778888888543 222221 11112367888886655444332222222 467888888
Q ss_pred eC-----cCCCCCcc------ccccCCCCCccEEEecC
Q 039954 434 IL-----DCKRLEAL------PKGLHNLTSLQELTIGG 460 (578)
Q Consensus 434 l~-----~~~~~~~~------~~~~~~l~~L~~L~l~~ 460 (578)
++ +|..++.. +..+.++++|++|++++
T Consensus 404 L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp EEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred eecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 87 44555532 22356677888888876
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=2.1e-20 Score=180.47 Aligned_cols=251 Identities=16% Similarity=0.185 Sum_probs=154.7
Q ss_pred ccCcccEEEecCCCCCccCCcccccccccEEeccCCCcc--ccccccc-------CcCCccEEecCCCchhHHhhHHH--
Q 039954 87 KLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIR--TLPESVN-------KLYNLHSLLLEDCWELEKLCADM-- 155 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~--~lp~~~~-------~l~~L~~L~l~~~~~~~~lp~~l-- 155 (578)
..+.|++|++++|.+ .+|..+... |++|++++|.++ .+|..+. .+++|++|++++|.....+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 566777777777777 666655444 777777777664 3444443 56666666666665444555544
Q ss_pred hccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCC
Q 039954 156 GNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYG 235 (578)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 235 (578)
+.+++|++|++++|. ++.+|..++.+.
T Consensus 118 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~---------------------------------------------------- 144 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS-WATRDAWLAELQ---------------------------------------------------- 144 (312)
T ss_dssp CCSCCCSEEEEESCB-CSSSSSHHHHHH----------------------------------------------------
T ss_pred hcCCCccEEEccCCC-CcchhHHHHHHH----------------------------------------------------
Confidence 566666666666666 222232221110
Q ss_pred CCCCCCCcCCCCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecC--ccccCCCCCCCCCCCCeeeeccC
Q 039954 236 GTNFPAWLGDSSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLG--SEFYGNDAPIPFPCLETLHFEDM 312 (578)
Q Consensus 236 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~ 312 (578)
.+ ..++|+.|++++|.+.+..+ .+..+++|++|++++|......+ ...
T Consensus 145 -----~~----~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------- 195 (312)
T 1wwl_A 145 -----QW----LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL-------------------- 195 (312)
T ss_dssp -----TT----CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS--------------------
T ss_pred -----Hh----hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH--------------------
Confidence 00 04688888888888877664 77888888888888876322110 000
Q ss_pred CCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHH-hcCCCCCccEEEeecCCC
Q 039954 313 QGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAE-RLDNNTSLETIRIFNCGN 391 (578)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~-~~~~l~~L~~L~l~~~~~ 391 (578)
. ++.+++|++|++++| .+++ +..++. .+.++++|++|++++|..
T Consensus 196 ------~-------~~~l~~L~~L~L~~N-~l~~---------------------~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 196 ------C-------PLKFPTLQVLALRNA-GMET---------------------PSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp ------C-------TTSCTTCCEEECTTS-CCCC---------------------HHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred ------H-------hccCCCCCEEECCCC-cCcc---------------------hHHHHHHHHhcCCCCCEEECCCCcC
Confidence 0 245677777877777 4431 122222 234667888888888755
Q ss_pred Ccccc-cCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-Cc
Q 039954 392 LKTLP-SGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-EL 462 (578)
Q Consensus 392 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l 462 (578)
....| ..+..+++|++|++++|... .+|..+. ++|+.|++++|+. +.+|. +..+++|++|++++ .+
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l-~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL-DRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC-CSCCC-TTTSCEEEEEECTTCTT
T ss_pred CcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC-CCChh-HhhCCCCCEEeccCCCC
Confidence 44442 34556788888888886544 6666554 7888888888764 44455 77788888888877 44
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=1.6e-18 Score=165.16 Aligned_cols=77 Identities=22% Similarity=0.171 Sum_probs=37.2
Q ss_pred cEEEecCCCCCccCCcccccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCC
Q 039954 92 RVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 92 r~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 170 (578)
++++.+++.++.+|..+ .++|++|++++|.++.+| ..+..+++|++|++++|......|..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 34455555555554433 245555555555555444 234555555555555553322223444555555555555543
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=9.2e-20 Score=176.39 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=41.4
Q ss_pred CCCCccEEEeecCCCCcccccCC-CCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccE
Q 039954 377 NNTSLETIRIFNCGNLKTLPSGL-HNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQE 455 (578)
Q Consensus 377 ~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 455 (578)
.+++|++|++++|......+..+ ..+++|++|++++|.... ++.. ..+++|+.|++++|. ++.+|..+..+++|++
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTW 218 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSE
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cccc-cccccCCEEECCCCc-CCcchhhhcccCcccE
Confidence 34466666666664333333333 245666666666654332 2221 235666666666654 3334444555555555
Q ss_pred EEecC
Q 039954 456 LTIGG 460 (578)
Q Consensus 456 L~l~~ 460 (578)
|++++
T Consensus 219 L~L~~ 223 (317)
T 3o53_A 219 ISLRN 223 (317)
T ss_dssp EECTT
T ss_pred EECcC
Confidence 55555
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=1.4e-17 Score=158.67 Aligned_cols=219 Identities=14% Similarity=0.122 Sum_probs=136.6
Q ss_pred ccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccccCccee
Q 039954 114 LRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVV 193 (578)
Q Consensus 114 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~ 193 (578)
-++++.++++++.+|..+ .++|++|++++|......+..++.+++|++|++++|.+....|..++.
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------------ 78 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG------------ 78 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC------------
Confidence 367888888899998755 468999999998554444456888899999999888733322333333
Q ss_pred ecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCC-CCCCCC-CCCCC
Q 039954 194 GNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCD-MCTALP-SVGQL 271 (578)
Q Consensus 194 ~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~l~~l 271 (578)
+++|+.|++++|. +....+ .+..+
T Consensus 79 ------------------------------------------------------l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 79 ------------------------------------------------------LALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp ------------------------------------------------------CTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred ------------------------------------------------------ccCCCEEeCCCCCCccccCHHHhcCC
Confidence 4456666666665 333323 55666
Q ss_pred CCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCC
Q 039954 272 PSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEH 351 (578)
Q Consensus 272 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 351 (578)
++|++|++++|... .+.. ..+..+++|++|++++| .+++..+.
T Consensus 105 ~~L~~L~l~~n~l~-~~~~----------------------------------~~~~~l~~L~~L~l~~n-~l~~~~~~- 147 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQ-ELGP----------------------------------GLFRGLAALQYLYLQDN-ALQALPDD- 147 (285)
T ss_dssp TTCCEEECTTSCCC-CCCT----------------------------------TTTTTCTTCCEEECCSS-CCCCCCTT-
T ss_pred cCCCEEECCCCcCC-EECH----------------------------------hHhhCCcCCCEEECCCC-cccccCHh-
Confidence 66777766665411 1100 00445667777777776 44421111
Q ss_pred CCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccc-cCCCCCCCcceEEeccCCCccccCCCCcCCCCcc
Q 039954 352 LPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLP-SGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLT 430 (578)
Q Consensus 352 l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 430 (578)
.+..+++|++|++++|. ++.++ ..+..+++|++|++++|...+..|..+..+++|+
T Consensus 148 ----------------------~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 148 ----------------------TFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp ----------------------TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ----------------------HhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 23445567777777764 33443 3466777777777777666555566666777777
Q ss_pred EEEeCcCCCCCccccccCCCCCccEEEecC
Q 039954 431 RLTILDCKRLEALPKGLHNLTSLQELTIGG 460 (578)
Q Consensus 431 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 460 (578)
.|++++|...+..+..+..+++|++|++++
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence 777777765544444567777777777776
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=1.1e-19 Score=175.44 Aligned_cols=103 Identities=16% Similarity=0.097 Sum_probs=61.9
Q ss_pred CCCCCccEEEeecCCCCc--ccc-cCCCCCCCcceEEeccCCCccccC-CCCcCCCCccEEEeCcCCCCCccccccCCCC
Q 039954 376 DNNTSLETIRIFNCGNLK--TLP-SGLHNLGQLQEIRIQKCRNLESFP-EGGLPCAKLTRLTILDCKRLEALPKGLHNLT 451 (578)
Q Consensus 376 ~~l~~L~~L~l~~~~~~~--~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 451 (578)
..+++|++|++++|.... .++ ..+..+++|++|++++|...+..| ..+..+++|+.|++++|.. +.+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-Chhhhhcc--C
Confidence 567778888888774331 121 222356777788887766555443 2344567777777777764 36665554 6
Q ss_pred CccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEee
Q 039954 452 SLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIIN 497 (578)
Q Consensus 452 ~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~ 497 (578)
+|++|++++ ++..++ .+..+++|++|++++
T Consensus 275 ~L~~L~Ls~N~l~~~p----------------~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRNP----------------SPDELPQVGNLSLKG 305 (312)
T ss_dssp EEEEEECCSSCCCSCC----------------CTTTSCEEEEEECTT
T ss_pred CceEEECCCCCCCCCh----------------hHhhCCCCCEEeccC
Confidence 677777776 555543 134456666666655
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=4.1e-21 Score=203.50 Aligned_cols=204 Identities=18% Similarity=0.129 Sum_probs=125.8
Q ss_pred cccccccEEeeeccCCCCCCCCCcCchhhhc-ccCcccEEEecCC-CCCc--cCCcccccccccEEeccCCCccc-----
Q 039954 56 YDIQHLRTFLPVMLSNSEPGYLAPSILPKLL-KLQRLRVFSLRGY-RIPE--LPDSVGDLRYLRYLNLSGTEIRT----- 126 (578)
Q Consensus 56 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~-~i~~--lp~~i~~l~~L~~L~L~~~~i~~----- 126 (578)
..+++|+.|.+.+. .+....+..+. .+++|++|++++| .++. ++..+..+++|++|++++|.++.
T Consensus 102 ~~~~~L~~L~L~~~------~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 102 SSYTWLEEIRLKRM------VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHCTTCCEEEEESC------BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HhCCCCCeEEeeCc------EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 46789999977653 34566666776 7899999999998 4544 45555689999999999998653
Q ss_pred ccccccCcCCccEEecCCCc--h-hHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccccCcceeec-CCCC---
Q 039954 127 LPESVNKLYNLHSLLLEDCW--E-LEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGN-GSGS--- 199 (578)
Q Consensus 127 lp~~~~~l~~L~~L~l~~~~--~-~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~-~~~~--- 199 (578)
++.....+++|++|++++|. . ...++..+..+++|++|++++|...+.+|..+..+++|+.|....... ....
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 33334577899999999884 1 133444456789999999999865666777777888888874322111 0000
Q ss_pred -CccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCCCCCCC-C-CCCCCCCcce
Q 039954 200 -GLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCDMCTAL-P-SVGQLPSLTH 276 (578)
Q Consensus 200 -~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~-~l~~l~~L~~ 276 (578)
....+..+++++ .+. .+... ....++..+. .+++|+.|++++|.+.... . .+..+++|++
T Consensus 256 ~l~~~l~~~~~L~-~Ls--~~~~~------------~~~~l~~~~~--~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~ 318 (594)
T 2p1m_B 256 GLSVALSGCKELR-CLS--GFWDA------------VPAYLPAVYS--VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR 318 (594)
T ss_dssp HHHHHHHTCTTCC-EEE--CCBTC------------CGGGGGGGHH--HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCE
T ss_pred HHHHHHhcCCCcc-ccc--CCccc------------chhhHHHHHH--hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCE
Confidence 001122222222 110 00000 0011222111 1678888888888754321 1 3457788888
Q ss_pred eeecCc
Q 039954 277 LAVCGM 282 (578)
Q Consensus 277 L~l~~~ 282 (578)
|++.+|
T Consensus 319 L~l~~~ 324 (594)
T 2p1m_B 319 LWVLDY 324 (594)
T ss_dssp EEEEGG
T ss_pred EeCcCc
Confidence 888876
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=3.4e-17 Score=155.11 Aligned_cols=82 Identities=22% Similarity=0.198 Sum_probs=48.6
Q ss_pred CcccEEEecCCCCCccC-CcccccccccEEeccCCCcccccc-cccCcCCccEEecCCCchhHHhhHHHhccccCccccc
Q 039954 89 QRLRVFSLRGYRIPELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKN 166 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 166 (578)
++|++|++++|.++.++ ..+..+++|++|++++|.++.++. .+.++++|++|++++|......+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666777777666663 356666677777777666666543 4566666666666666433333344555555555555
Q ss_pred CCCC
Q 039954 167 SNTK 170 (578)
Q Consensus 167 ~~~~ 170 (578)
++|.
T Consensus 108 ~~n~ 111 (276)
T 2z62_A 108 VETN 111 (276)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 5554
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=2.5e-17 Score=168.59 Aligned_cols=234 Identities=11% Similarity=0.047 Sum_probs=165.8
Q ss_pred CCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCc
Q 039954 248 FSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQG 326 (578)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 326 (578)
+++|+.|++++|.+.+..+ .+..+++|++|++++|......+ ...+++|+.|+++++. +..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------l~~l~~L~~L~Ls~N~-l~~--------- 94 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--------LESLSTLRTLDLNNNY-VQE--------- 94 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--------CTTCTTCCEEECCSSE-EEE---------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--------cccCCCCCEEEecCCc-CCC---------
Confidence 6699999999999987665 78899999999999987433222 1226777777777663 111
Q ss_pred cccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcc
Q 039954 327 VERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQ 406 (578)
Q Consensus 327 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 406 (578)
+...++|++|++++| .+.+..+ ..+++|+.|++++|......|..+..+++|+
T Consensus 95 l~~~~~L~~L~L~~N-~l~~~~~--------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 147 (487)
T 3oja_A 95 LLVGPSIETLHAANN-NISRVSC--------------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (487)
T ss_dssp EEECTTCCEEECCSS-CCCCEEE--------------------------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEE
T ss_pred CCCCCCcCEEECcCC-cCCCCCc--------------------------cccCCCCEEECCCCCCCCCCchhhcCCCCCC
Confidence 223467777777776 4542111 2345788888888866555567777888899
Q ss_pred eEEeccCCCccccCCCCc-CCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccc
Q 039954 407 EIRIQKCRNLESFPEGGL-PCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGF 484 (578)
Q Consensus 407 ~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~ 484 (578)
+|++++|...+..|..+. .+++|+.|++++|.. +.++. ...+++|++|++++ .+..++. .+
T Consensus 148 ~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l-~~~~~-~~~l~~L~~L~Ls~N~l~~~~~---------------~~ 210 (487)
T 3oja_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKG-QVVFAKLKTLDLSSNKLAFMGP---------------EF 210 (487)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEEEC-CCCCTTCCEEECCSSCCCEECG---------------GG
T ss_pred EEECCCCCCCCcChHHHhhhCCcccEEecCCCcc-ccccc-cccCCCCCEEECCCCCCCCCCH---------------hH
Confidence 999988877766666554 678899999988874 44433 44688888888888 7766542 36
Q ss_pred cCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCc-cccccccCCCCCcceEEec
Q 039954 485 HRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNL-ERLSSSIVDLQNLTILQLY 554 (578)
Q Consensus 485 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~i~~~~~~l~~L~~L~l~ 554 (578)
..+++|+.|++++ +.+..+|... ..+++|+.|++++++-. ..+|..+..+++|+.+++.
T Consensus 211 ~~l~~L~~L~Ls~--N~l~~lp~~l---------~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 211 QSAAGVTWISLRN--NKLVLIEKAL---------RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGTTCSEEECTT--SCCCEECTTC---------CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCccEEEecC--CcCcccchhh---------ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 6788899999888 4666777654 56678889999886443 2566677778888888875
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.1e-16 Score=152.33 Aligned_cols=81 Identities=22% Similarity=0.210 Sum_probs=52.6
Q ss_pred cccCcccEEEecCCCCCccCCcccccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhHHHhccccCccc
Q 039954 86 LKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHL 164 (578)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 164 (578)
.++++++.++++++.++.+|..+. +++++|++++|.++.++ ..+..+++|++|++++|. +..++. .+.+++|+.|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC-CCCCCcCCEE
Confidence 356677777777777777766553 56777777777776653 556677777777777763 333333 2566666666
Q ss_pred ccCCCC
Q 039954 165 KNSNTK 170 (578)
Q Consensus 165 ~l~~~~ 170 (578)
++++|.
T Consensus 83 ~Ls~N~ 88 (290)
T 1p9a_G 83 DLSHNQ 88 (290)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 666665
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=6.1e-17 Score=152.82 Aligned_cols=91 Identities=15% Similarity=0.140 Sum_probs=58.1
Q ss_pred CCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCc
Q 039954 248 FSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQG 326 (578)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 326 (578)
+++|+.|++++|.+.+..+ .+..+++|++|++++|. ++.++... ...+++|+.|++.+++.
T Consensus 156 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-----~~~l~~L~~L~l~~N~~------------ 217 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGV-----FDRLTSLQYIWLHDNPW------------ 217 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT-----TTTCTTCCEEECCSSCB------------
T ss_pred CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHH-----HhCCcCCCEEEccCCCc------------
Confidence 5667777777777665444 45677777777777765 22222221 12266777777776531
Q ss_pred cccCcccceeecccccccccCCCCCCCCCcc
Q 039954 327 VERFPKLRELHILRCSKLQGTFPEHLPALEK 357 (578)
Q Consensus 327 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 357 (578)
.+.+++|+.++++.| .+.|.+|.++..+..
T Consensus 218 ~~~~~~l~~l~~~~n-~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 218 DCTCPGIRYLSEWIN-KHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCCTTTTHHHHHHHH-HTGGGBBCTTSCBCG
T ss_pred cccCcHHHHHHHHHH-hCCCcccCcccccCC
Confidence 345778888888887 677788877666543
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=9.1e-17 Score=151.62 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=51.5
Q ss_pred cccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccc
Q 039954 86 LKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLK 165 (578)
Q Consensus 86 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 165 (578)
..++.|+.|+++++.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|......+..++.+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 36667777777777666553 4666777777777777666654 466666666666666643333333355666666666
Q ss_pred cCCCC
Q 039954 166 NSNTK 170 (578)
Q Consensus 166 l~~~~ 170 (578)
+++|.
T Consensus 116 L~~n~ 120 (272)
T 3rfs_A 116 LVENQ 120 (272)
T ss_dssp CTTSC
T ss_pred CCCCc
Confidence 66665
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=4e-16 Score=147.09 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=46.9
Q ss_pred cccEEEecCCCCCccCCcccccccccEEeccCCCcccccc-cccCcCCccEEecCCCchhHHhhHH-HhccccCcccccC
Q 039954 90 RLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCWELEKLCAD-MGNLAKLHHLKNS 167 (578)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~ 167 (578)
..+.++++++.++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|.. ..+|.. +..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECC
Confidence 35666666666666665543 466777777766666653 466666666666666632 333332 3556666666666
Q ss_pred CCC
Q 039954 168 NTK 170 (578)
Q Consensus 168 ~~~ 170 (578)
+|.
T Consensus 94 ~n~ 96 (270)
T 2o6q_A 94 DNK 96 (270)
T ss_dssp SSC
T ss_pred CCc
Confidence 665
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=2.5e-18 Score=168.20 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=37.1
Q ss_pred CcccEEEecCCCCCccCCcccccccccEEeccCCCccc--ccccccCcCCccEEecCCCchhHHhhHHHhccccCccccc
Q 039954 89 QRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRT--LPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKN 166 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 166 (578)
+.+++|+++++.+...+..+..+++|++|++++|.+.. +|..+..+++|++|++++|......+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 44555555544444333333444455555555444431 3444444445555555444333344444444444444444
Q ss_pred CCC
Q 039954 167 SNT 169 (578)
Q Consensus 167 ~~~ 169 (578)
++|
T Consensus 150 ~~~ 152 (336)
T 2ast_B 150 SGC 152 (336)
T ss_dssp TTC
T ss_pred CCC
Confidence 444
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=3.6e-16 Score=144.58 Aligned_cols=205 Identities=20% Similarity=0.268 Sum_probs=155.2
Q ss_pred ccccccCCCCCCCCCcceEEEEecCCchhhHHH-hcCCCCCccEEEeecCCCCcccc-cCCCCCCCcceEEeccCCCccc
Q 039954 341 CSKLQGTFPEHLPALEKLSLYVYGCSKLESIAE-RLDNNTSLETIRIFNCGNLKTLP-SGLHNLGQLQEIRIQKCRNLES 418 (578)
Q Consensus 341 ~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~ 418 (578)
|..++ .+|....+++.|.+.. +.++.+|. .+.++++|++|++++|..++.++ ..+..+++|++|++++|+.++.
T Consensus 20 c~~l~-~ip~~~~~l~~L~l~~---n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 20 CKDIQ-RIPSLPPSTQTLKLIE---THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp ECSCS-SCCCCCTTCCEEEEES---CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred ccCcc-ccCCCCCcccEEEEeC---CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 33465 6676333566655543 33455554 67889999999999986466664 4678899999999998455555
Q ss_pred cC-CCCcCCCCccEEEeCcCCCCCccccccCCCCCcc---EEEecC--CcCCcccCCCCCCCcceeeccccccCCCccc-
Q 039954 419 FP-EGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQ---ELTIGG--ELPSLEEDGLPTNLHSMIERGRGFHRFSSLR- 491 (578)
Q Consensus 419 ~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~--~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~- 491 (578)
++ ..+..+++|+.|++++|.. +.+|. +..+++|+ +|++++ .+..++. ..+.++++|+
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--------------~~~~~l~~L~~ 159 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPV--------------NAFQGLCNETL 159 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECT--------------TTTTTTBSSEE
T ss_pred cCHHHhCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCc--------------ccccchhccee
Confidence 55 4567889999999999874 45776 88888888 999987 4555543 2477899999
Q ss_pred EEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCcccccc-ccCCC-CCcceEEeccCCCCcccCCCCCCC
Q 039954 492 QLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSS-SIVDL-QNLTILQLYNCPKLKYFPEKGLPS 569 (578)
Q Consensus 492 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~ 569 (578)
.|++++ +.+..++...+ .. ++|++|++++++.++.++. .+..+ ++|++|++++ ++++.+|.. ..+
T Consensus 160 ~L~l~~--n~l~~i~~~~~--------~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~ 226 (239)
T 2xwt_C 160 TLKLYN--NGFTSVQGYAF--------NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLE 226 (239)
T ss_dssp EEECCS--CCCCEECTTTT--------TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCT
T ss_pred EEEcCC--CCCcccCHhhc--------CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-Hhc
Confidence 999998 56778887652 23 7999999999767998875 78888 9999999999 799999887 446
Q ss_pred cccceEecC
Q 039954 570 SLLELDINR 578 (578)
Q Consensus 570 sL~~l~l~~ 578 (578)
+|+.|++.+
T Consensus 227 ~L~~L~l~~ 235 (239)
T 2xwt_C 227 HLKELIARN 235 (239)
T ss_dssp TCSEEECTT
T ss_pred cCceeeccC
Confidence 999998764
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=2.7e-15 Score=141.37 Aligned_cols=158 Identities=23% Similarity=0.304 Sum_probs=122.1
Q ss_pred hcCCCCCccEEEeecCCCCcccc-cCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCC
Q 039954 374 RLDNNTSLETIRIFNCGNLKTLP-SGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTS 452 (578)
Q Consensus 374 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 452 (578)
.+.++++|++|++++|.. +.++ ..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++
T Consensus 56 ~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 134 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134 (270)
T ss_dssp SSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence 466778999999999854 4554 44578999999999997655444455678899999999998866666667889999
Q ss_pred ccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEecc
Q 039954 453 LQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINN 531 (578)
Q Consensus 453 L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 531 (578)
|++|++++ .+..++.. .+..+++|+.|++++ +.+..++... +..+++|++|++++
T Consensus 135 L~~L~Ls~n~l~~~~~~--------------~~~~l~~L~~L~L~~--n~l~~~~~~~--------~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 135 LTYLSLGYNELQSLPKG--------------VFDKLTSLKELRLYN--NQLKRVPEGA--------FDKLTELKTLKLDN 190 (270)
T ss_dssp CCEEECCSSCCCCCCTT--------------TTTTCTTCCEEECCS--SCCSCCCTTT--------TTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHh--------------HccCCcccceeEecC--CcCcEeChhH--------hccCCCcCEEECCC
Confidence 99999998 77766532 367789999999988 4666676543 24668999999999
Q ss_pred CCCcccccc-ccCCCCCcceEEeccCC
Q 039954 532 FPNLERLSS-SIVDLQNLTILQLYNCP 557 (578)
Q Consensus 532 ~~~l~~i~~-~~~~l~~L~~L~l~~c~ 557 (578)
+ .++.++. .+..+++|+.|++++++
T Consensus 191 N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 191 N-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp S-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-cCCcCCHHHhccccCCCEEEecCCC
Confidence 5 7888876 57788999999998854
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=1.8e-15 Score=143.79 Aligned_cols=157 Identities=22% Similarity=0.248 Sum_probs=105.1
Q ss_pred HhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCC
Q 039954 373 ERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTS 452 (578)
Q Consensus 373 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 452 (578)
..+.++++|++|++++|. ++.++.. ..+++|++|++++|. ++.+|..+..+++|+.|++++|...+..+..|..+++
T Consensus 49 ~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~ 125 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125 (290)
T ss_dssp GGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT
T ss_pred HHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC
Confidence 356667777777777764 4445433 577777888877754 3466666667777778887777654444456777777
Q ss_pred ccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEecc
Q 039954 453 LQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINN 531 (578)
Q Consensus 453 L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 531 (578)
|++|++++ .+..++.. .+..+++|+.|++++ +.+..++.+.+ ..+++|++|++++
T Consensus 126 L~~L~L~~N~l~~~~~~--------------~~~~l~~L~~L~L~~--N~l~~l~~~~~--------~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPG--------------LLTPTPKLEKLSLAN--NNLTELPAGLL--------NGLENLDTLLLQE 181 (290)
T ss_dssp CCEEECTTSCCCCCCTT--------------TTTTCTTCCEEECTT--SCCSCCCTTTT--------TTCTTCCEEECCS
T ss_pred CCEEECCCCCCCccChh--------------hcccccCCCEEECCC--CcCCccCHHHh--------cCcCCCCEEECCC
Confidence 88887777 66655432 345667777777776 45666665442 4567777777777
Q ss_pred CCCccccccccCCCCCcceEEeccCC
Q 039954 532 FPNLERLSSSIVDLQNLTILQLYNCP 557 (578)
Q Consensus 532 ~~~l~~i~~~~~~l~~L~~L~l~~c~ 557 (578)
+.++.+|..+...++|+.+++++++
T Consensus 182 -N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 182 -NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred -CcCCccChhhcccccCCeEEeCCCC
Confidence 4677777766666777777777643
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=3.1e-18 Score=170.75 Aligned_cols=93 Identities=23% Similarity=0.235 Sum_probs=71.7
Q ss_pred cCchhhhcccCcccEEEecCCCCCc-----cCCcccccccccEEeccCCCcc----cccccc-------cCcCCccEEec
Q 039954 79 PSILPKLLKLQRLRVFSLRGYRIPE-----LPDSVGDLRYLRYLNLSGTEIR----TLPESV-------NKLYNLHSLLL 142 (578)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~i~----~lp~~~-------~~l~~L~~L~l 142 (578)
..++..+..+++|++|++++|.++. ++..+..+++|++|++++|.+. .+|..+ ..+++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 4455666688899999999998764 3445778899999999987554 344444 68899999999
Q ss_pred CCCchhH----HhhHHHhccccCcccccCCCCc
Q 039954 143 EDCWELE----KLCADMGNLAKLHHLKNSNTKS 171 (578)
Q Consensus 143 ~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~ 171 (578)
++|.... .+|..+..+++|++|++++|.+
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 9986554 4777888999999999999884
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=6.3e-16 Score=146.37 Aligned_cols=200 Identities=17% Similarity=0.127 Sum_probs=144.0
Q ss_pred CCCCCeeeeccCCCccccccCCCCCccccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCC
Q 039954 301 FPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTS 380 (578)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~ 380 (578)
.+++++|+++++.. ...... .+..+++|++|++++| .+.+..+ ..+.++++
T Consensus 27 ~~~l~~L~ls~n~l-~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~-----------------------~~~~~l~~ 77 (276)
T 2z62_A 27 PFSTKNLDLSFNPL-RHLGSY----SFFSFPELQVLDLSRC-EIQTIED-----------------------GAYQSLSH 77 (276)
T ss_dssp CTTCCEEECTTCCC-CEECTT----TTTTCTTCSEEECTTC-CCCEECT-----------------------TTTTTCTT
T ss_pred CCCccEEECCCCcc-cccCHh----HhccccCCcEEECCCC-cCCccCH-----------------------HHccCCcC
Confidence 35678888876642 222111 2566778888888877 5542222 13566778
Q ss_pred ccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCC-ccccccCCCCCccEEEec
Q 039954 381 LETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLE-ALPKGLHNLTSLQELTIG 459 (578)
Q Consensus 381 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~ 459 (578)
|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|.... .+|..+..+++|++|+++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 9999999986555445778899999999999977665555567888999999999988655 368889999999999999
Q ss_pred C-CcCCcccCCCCCCCcceeeccccccCCCccc----EEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCC
Q 039954 460 G-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLR----QLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPN 534 (578)
Q Consensus 460 ~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 534 (578)
+ .+..++.. .+..+++|+ .|++++ +.+..++...+ ...+|++|+++++ .
T Consensus 158 ~N~l~~~~~~--------------~~~~l~~L~~l~l~L~ls~--n~l~~~~~~~~---------~~~~L~~L~L~~n-~ 211 (276)
T 2z62_A 158 SNKIQSIYCT--------------DLRVLHQMPLLNLSLDLSL--NPMNFIQPGAF---------KEIRLKELALDTN-Q 211 (276)
T ss_dssp SSCCCEECGG--------------GGHHHHTCTTCCEEEECCS--SCCCEECTTSS---------CSCCEEEEECCSS-C
T ss_pred CCCCCcCCHH--------------HhhhhhhccccceeeecCC--CcccccCcccc---------CCCcccEEECCCC-c
Confidence 8 77665432 344445555 788888 56777776542 3348999999995 6
Q ss_pred cccccc-ccCCCCCcceEEecc
Q 039954 535 LERLSS-SIVDLQNLTILQLYN 555 (578)
Q Consensus 535 l~~i~~-~~~~l~~L~~L~l~~ 555 (578)
++.++. .+..+++|++|++++
T Consensus 212 l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 212 LKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CSCCCTTTTTTCCSCCEEECCS
T ss_pred eeecCHhHhcccccccEEEccC
Confidence 888876 568899999999996
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=3.6e-15 Score=137.82 Aligned_cols=182 Identities=16% Similarity=0.241 Sum_probs=89.8
Q ss_pred CCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCc
Q 039954 248 FSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQG 326 (578)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 326 (578)
.++++.|++++|.+.+..+ .+..+++|++|++++|..++.++...+. .+++|++|++.++..+...... .
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~-----~l~~L~~L~l~~~n~l~~i~~~----~ 100 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY-----NLSKVTHIEIRNTRNLTYIDPD----A 100 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE-----SCTTCCEEEEEEETTCCEECTT----S
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC-----CCcCCcEEECCCCCCeeEcCHH----H
Confidence 3489999999999886655 6788999999999888645554432211 1445555555442222221111 1
Q ss_pred cccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCcc---EEEeecCCCCcccc-cCCCCC
Q 039954 327 VERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLE---TIRIFNCGNLKTLP-SGLHNL 402 (578)
Q Consensus 327 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~---~L~l~~~~~~~~~~-~~~~~l 402 (578)
+..+++|++|++++| .++ .+|. +. .+++|+ +|++++|..++.++ ..+..+
T Consensus 101 f~~l~~L~~L~l~~n-~l~-~lp~-~~-----------------------~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 101 LKELPLLKFLGIFNT-GLK-MFPD-LT-----------------------KVYSTDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp EECCTTCCEEEEEEE-CCC-SCCC-CT-----------------------TCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred hCCCCCCCEEeCCCC-CCc-cccc-cc-----------------------cccccccccEEECCCCcchhhcCcccccch
Confidence 334455555555554 333 1221 11 222232 55555553333332 234455
Q ss_pred CCcc-eEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCcc-ccccCCC-CCccEEEecC-CcCCc
Q 039954 403 GQLQ-EIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEAL-PKGLHNL-TSLQELTIGG-ELPSL 465 (578)
Q Consensus 403 ~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l-~~L~~L~l~~-~l~~l 465 (578)
++|+ +|++++|... .+|......++|+.|++++|+.++.+ +..+..+ ++|++|++++ .+..+
T Consensus 155 ~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 155 CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp BSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred hcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC
Confidence 5555 5555554332 44433222245555555555323333 2234444 4555555554 44333
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=6.9e-15 Score=144.17 Aligned_cols=184 Identities=17% Similarity=0.261 Sum_probs=87.1
Q ss_pred CceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCcc
Q 039954 249 SNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGV 327 (578)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 327 (578)
++++.|++++|.+....+ .+..+++|++|++++|...+.++...+.+ ++++.++...++..+....... +
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~-----L~~l~~~l~~~~N~l~~l~~~~----f 100 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN-----LPKLHEIRIEKANNLLYINPEA----F 100 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS-----CTTCCEEEEEEETTCCEECTTS----B
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc-----chhhhhhhcccCCcccccCchh----h
Confidence 477888888887765444 56777788888887776544444322111 3344433333222222221111 3
Q ss_pred ccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCccccc-CCCCC-CCc
Q 039954 328 ERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPS-GLHNL-GQL 405 (578)
Q Consensus 328 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l-~~L 405 (578)
..+++|++|++++| .+. .+|.. .+....++..+++.++..+..++. .+..+ ..+
T Consensus 101 ~~l~~L~~L~l~~n-~l~-~~~~~----------------------~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 101 QNLPNLQYLLISNT-GIK-HLPDV----------------------HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp CCCTTCCEEEEEEE-CCS-SCCCC----------------------TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred hhcccccccccccc-ccc-cCCch----------------------hhcccchhhhhhhccccccccccccchhhcchhh
Confidence 44555555555554 333 11110 011122344555554444444432 22333 235
Q ss_pred ceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCcccc-ccCCCCCccEEEecC-CcCCcc
Q 039954 406 QEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPK-GLHNLTSLQELTIGG-ELPSLE 466 (578)
Q Consensus 406 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~-~l~~l~ 466 (578)
+.|++++|. ++.++.......+|+.+++.++..++.+|. .|.++++|++|++++ ++..++
T Consensus 157 ~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 157 VILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp EEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred hhhcccccc-ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 555555533 334444433445555555555444554443 345555555555555 444444
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=1.4e-15 Score=146.12 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=47.2
Q ss_pred CCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCcc
Q 039954 248 FSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGV 327 (578)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 327 (578)
+++|+.|++++|.+.+. +.+..+++|+.|++++|. ++.++. ...+++|+.|+++++.. .... .+
T Consensus 150 l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~-l~~~~~-------l~~l~~L~~L~L~~N~l-~~~~------~l 213 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNK-ISDISP-------LASLPNLIEVHLKNNQI-SDVS------PL 213 (308)
T ss_dssp CTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC-CCCCGG-------GGGCTTCCEEECTTSCC-CBCG------GG
T ss_pred CCCccEEEccCCcCCCC-hhhcCCCCCCEEECCCCc-cCcChh-------hcCCCCCCEEEccCCcc-Cccc------cc
Confidence 55666777777666543 236666777777776664 222221 12266666776666532 1111 15
Q ss_pred ccCcccceeecccccccc
Q 039954 328 ERFPKLRELHILRCSKLQ 345 (578)
Q Consensus 328 ~~~~~L~~L~l~~~~~l~ 345 (578)
..+++|+.|++++| .++
T Consensus 214 ~~l~~L~~L~l~~N-~i~ 230 (308)
T 1h6u_A 214 ANTSNLFIVTLTNQ-TIT 230 (308)
T ss_dssp TTCTTCCEEEEEEE-EEE
T ss_pred cCCCCCCEEEccCC-eee
Confidence 66788888888887 455
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=1.5e-18 Score=173.15 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=52.5
Q ss_pred ccEEEecCCCCCccCCcccccccccEEeccCCCccc-----ccccccCcCCccEEecCCCc---hhHHhhHH-------H
Q 039954 91 LRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRT-----LPESVNKLYNLHSLLLEDCW---ELEKLCAD-------M 155 (578)
Q Consensus 91 Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~---~~~~lp~~-------l 155 (578)
|++..++...+..++..+..+++|++|++++|.++. ++..+..+++|++|++++|. ....+|.. +
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 333333333344566677778888888888887763 34446678888888888762 11233333 4
Q ss_pred hccccCcccccCCCCc
Q 039954 156 GNLAKLHHLKNSNTKS 171 (578)
Q Consensus 156 ~~l~~L~~L~l~~~~~ 171 (578)
..+++|++|++++|.+
T Consensus 91 ~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAF 106 (386)
T ss_dssp TTCTTCCEEECCSCCC
T ss_pred hhCCcccEEECCCCcC
Confidence 6778888888888773
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=1.8e-14 Score=141.22 Aligned_cols=237 Identities=18% Similarity=0.150 Sum_probs=159.6
Q ss_pred eEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCc
Q 039954 252 VTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFP 331 (578)
Q Consensus 252 ~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 331 (578)
+.++-+++.++..+..+ .+++++|++++|. ++.++... +..++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~----------------------------------f~~l~ 54 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGA----------------------------------FSGFG 54 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTS----------------------------------STTCT
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHH----------------------------------HcCCC
Confidence 34556666665332233 3577888887765 33333211 45677
Q ss_pred ccceeecccccccccCCCC-CCCCCcce-EEEEecCCchhhH-HHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceE
Q 039954 332 KLRELHILRCSKLQGTFPE-HLPALEKL-SLYVYGCSKLESI-AERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEI 408 (578)
Q Consensus 332 ~L~~L~l~~~~~l~~~~~~-~l~~l~~L-~l~~~~~~~l~~i-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 408 (578)
+|++|++++| .+.+.+|. .+.++..+ .+....++.+..+ |..+..+++|++|++++|......+..+....++..+
T Consensus 55 ~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 133 (350)
T 4ay9_X 55 DLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133 (350)
T ss_dssp TCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred CCCEEECcCC-CCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence 7777777777 33324442 34444433 2444555666665 3457788899999999985443334455566778888
Q ss_pred EeccCCCccccCC-CCcCC-CCccEEEeCcCCCCCccccccCCCCCccEEEecC--CcCCcccCCCCCCCcceeeccccc
Q 039954 409 RIQKCRNLESFPE-GGLPC-AKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG--ELPSLEEDGLPTNLHSMIERGRGF 484 (578)
Q Consensus 409 ~l~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~--~l~~l~~~~~~~~l~~l~~~~~~~ 484 (578)
++.++..+..++. .+..+ ..++.|++++|. ++.++.......+|+++++.+ .+..++.. .|
T Consensus 134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~--------------~f 198 (350)
T 4ay9_X 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPND--------------VF 198 (350)
T ss_dssp EEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCCCCCTT--------------TT
T ss_pred hhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhccCCcccCCCHH--------------Hh
Confidence 8888777777765 33343 468889998886 556666666677889998875 67766643 46
Q ss_pred cCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccccccccCCCCCcceEEecc
Q 039954 485 HRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQLYN 555 (578)
Q Consensus 485 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~ 555 (578)
.++++|+.|++++ +.++.+|.. .+.+|+.|.+.++++++.+| .+..+++|+.+++.+
T Consensus 199 ~~l~~L~~LdLs~--N~l~~lp~~-----------~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 199 HGASGPVILDISR--TRIHSLPSY-----------GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TTEECCSEEECTT--SCCCCCCSS-----------SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred ccCcccchhhcCC--CCcCccChh-----------hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 7788999999988 578888863 45688888888888888888 578889999998864
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=1e-16 Score=158.05 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=66.1
Q ss_pred CCCCcCchhhhcccCcccEEEecCCCCCccC-----Ccccccc-cccEEeccCCCcccc-cccccCc-----CCccEEec
Q 039954 75 GYLAPSILPKLLKLQRLRVFSLRGYRIPELP-----DSVGDLR-YLRYLNLSGTEIRTL-PESVNKL-----YNLHSLLL 142 (578)
Q Consensus 75 ~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-----~~i~~l~-~L~~L~L~~~~i~~l-p~~~~~l-----~~L~~L~l 142 (578)
+.+...+|..+...++|++|++++|.++..+ ..+..++ +|++|++++|.++.. +..+..+ ++|++|++
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 3444455554446666888888888887664 5566777 888888888887755 3445554 88888888
Q ss_pred CCCchhHHhhHHHhc----c-ccCcccccCCCC
Q 039954 143 EDCWELEKLCADMGN----L-AKLHHLKNSNTK 170 (578)
Q Consensus 143 ~~~~~~~~lp~~l~~----l-~~L~~L~l~~~~ 170 (578)
++|......+..++. + ++|++|++++|.
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 888654444444433 3 788888888887
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=4.1e-15 Score=142.81 Aligned_cols=121 Identities=20% Similarity=0.293 Sum_probs=68.4
Q ss_pred CccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccC
Q 039954 54 DLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNK 133 (578)
Q Consensus 54 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~ 133 (578)
...++++|++|.+.+.. ...++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .+..
T Consensus 36 ~~~~l~~L~~L~l~~~~-------i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~ 105 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTG-------VTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAG 105 (308)
T ss_dssp CHHHHHTCCEEECTTSC-------CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTT
T ss_pred cHHHcCCcCEEEeeCCC-------ccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcC
Confidence 34455666666443321 12222 44566666666666666666644 666666666666666666654 4666
Q ss_pred cCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCccccccc
Q 039954 134 LYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (578)
Q Consensus 134 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 188 (578)
+++|++|++++|. +..++. +..+++|++|++++|. ++.++. ++.+++|+.|
T Consensus 106 l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L 156 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYL 156 (308)
T ss_dssp CTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEE
T ss_pred CCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEE
Confidence 6666666666663 333433 6666666666666666 333333 5555555555
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=1.7e-16 Score=155.22 Aligned_cols=257 Identities=17% Similarity=0.153 Sum_probs=171.3
Q ss_pred CCCeeEEEeeeCCCCccccccCcccc--ccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCc--cCCcc
Q 039954 33 SENLRHLSYIRGDYDGVQRFGDLYDI--QHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPE--LPDSV 108 (578)
Q Consensus 33 ~~~~r~ls~~~~~~~~~~~~~~~~~~--~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~--lp~~i 108 (578)
+...+++.+..+.+. ...+..+ +.++.|.+.+ +.+ ...+..++.+++|++|++++|.++. +|..+
T Consensus 46 ~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~------n~l-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 114 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPR------SFM-DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 114 (336)
T ss_dssp STTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTT------CEE-CSCCCSCCCCBCCCEEECTTCEECHHHHHHHH
T ss_pred chhheeeccccccCC----HHHHHhhhhccceEEEcCC------ccc-cccchhhccCCCCCEEEccCCCcCHHHHHHHH
Confidence 344667776655443 1334445 7888885543 222 3334456789999999999999863 67788
Q ss_pred cccccccEEeccCCCcc-cccccccCcCCccEEecCCCc-hhH-HhhHHHhccccCcccccCCC-Ccccc-cCCCCCCcc
Q 039954 109 GDLRYLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCW-ELE-KLCADMGNLAKLHHLKNSNT-KSLEE-MPVGIGRLT 183 (578)
Q Consensus 109 ~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~-~~~-~lp~~l~~l~~L~~L~l~~~-~~~~~-lp~~i~~l~ 183 (578)
..+++|++|++++|.++ ..|..++.+++|++|++++|. ... .++..+..+++|++|++++| .+... ++..+..++
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 99999999999999986 567888999999999999994 433 47778999999999999999 63322 555567777
Q ss_pred -cccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCCCCCCceeEEEeccCC-C
Q 039954 184 -CLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGDSSFSNLVTLKFKNCD-M 261 (578)
Q Consensus 184 -~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~ 261 (578)
+|+.|....+.. .+.+ ..+|..+. .+++|+.|++++|. +
T Consensus 195 ~~L~~L~l~~~~~-------------------------~~~~------------~~l~~~~~--~~~~L~~L~l~~~~~l 235 (336)
T 2ast_B 195 ETITQLNLSGYRK-------------------------NLQK------------SDLSTLVR--RCPNLVHLDLSDSVML 235 (336)
T ss_dssp TTCCEEECCSCGG-------------------------GSCH------------HHHHHHHH--HCTTCSEEECTTCTTC
T ss_pred cCCCEEEeCCCcc-------------------------cCCH------------HHHHHHHh--hCCCCCEEeCCCCCcC
Confidence 777773221100 0000 00111111 17899999999998 4
Q ss_pred CCC-CCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccC-cccceeecc
Q 039954 262 CTA-LPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERF-PKLRELHIL 339 (578)
Q Consensus 262 ~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~ 339 (578)
.+. ++.+..+++|++|++++|..+....... ...+++|+.|++.++ +.+.. +..+ .+++.|+++
T Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----l~~~~~L~~L~l~~~--i~~~~-------~~~l~~~l~~L~l~ 301 (336)
T 2ast_B 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE-----LGEIPTLKTLQVFGI--VPDGT-------LQLLKEALPHLQIN 301 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG-----GGGCTTCCEEECTTS--SCTTC-------HHHHHHHSTTSEES
T ss_pred CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH-----HhcCCCCCEEeccCc--cCHHH-------HHHHHhhCcceEEe
Confidence 433 3377888999999999986443322111 123888999999887 22211 2333 347777787
Q ss_pred cccccccCCCCCCCC
Q 039954 340 RCSKLQGTFPEHLPA 354 (578)
Q Consensus 340 ~~~~l~~~~~~~l~~ 354 (578)
+| .+++..|..+..
T Consensus 302 ~n-~l~~~~~~~~~~ 315 (336)
T 2ast_B 302 CS-HFTTIARPTIGN 315 (336)
T ss_dssp CC-CSCCTTCSSCSS
T ss_pred cc-cCccccCCcccc
Confidence 76 777777665543
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=3.1e-14 Score=132.55 Aligned_cols=134 Identities=15% Similarity=0.135 Sum_probs=64.8
Q ss_pred cCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCcc
Q 039954 375 LDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQ 454 (578)
Q Consensus 375 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 454 (578)
+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 134 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc
Confidence 34445555666655543333334455555566666655444433333444555555555555543332223345555555
Q ss_pred EEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccC
Q 039954 455 ELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNF 532 (578)
Q Consensus 455 ~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 532 (578)
+|++++ .+..++.. .+..+++|+.|++++ +.+..++... +..+++|++|+++++
T Consensus 135 ~L~Ls~N~l~~~~~~--------------~~~~l~~L~~L~L~~--N~l~~~~~~~--------~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 135 ELRLNTNQLQSIPAG--------------AFDKLTNLQTLSLST--NQLQSVPHGA--------FDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSCCCCCCTT--------------TTTTCTTCCEEECCS--SCCSCCCTTT--------TTTCTTCCEEECCSC
T ss_pred EEECcCCcCCccCHH--------------HcCcCcCCCEEECCC--CcCCccCHHH--------HhCCCCCCEEEeeCC
Confidence 555555 44444321 234455555555555 3344444322 133455555555553
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=5.9e-15 Score=142.13 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=117.7
Q ss_pred hcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccc--cC--CCCcCCCCccEEEeCcCCCCCcccc----
Q 039954 374 RLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLES--FP--EGGLPCAKLTRLTILDCKRLEALPK---- 445 (578)
Q Consensus 374 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~~~~~~~L~~L~l~~~~~~~~~~~---- 445 (578)
.+..+++|++|++++|......+..+..+++|++|++++|...+. ++ .....+++|+.|++++|.. +.++.
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~ 218 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAA 218 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHH
Confidence 345788999999999976555567888999999999999876542 22 2346789999999999875 44443
Q ss_pred ccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccc
Q 039954 446 GLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASL 524 (578)
Q Consensus 446 ~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 524 (578)
.+.++++|++|++++ .+.......+. .+..+++|++|++++ +.+..+|.. .+++|
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~-----------~~~~~~~L~~L~Ls~--N~l~~lp~~-----------~~~~L 274 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAP-----------RCMWSSALNSLNLSF--AGLEQVPKG-----------LPAKL 274 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCS-----------SCCCCTTCCCEECCS--SCCCSCCSC-----------CCSCC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHH-----------hccCcCcCCEEECCC--CCCCchhhh-----------hcCCC
Confidence 246789999999999 77665211110 123347999999988 566677753 34799
Q ss_pred cEEEeccCCCccccccccCCCCCcceEEeccCCCCcc
Q 039954 525 TSLMINNFPNLERLSSSIVDLQNLTILQLYNCPKLKY 561 (578)
Q Consensus 525 ~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~ 561 (578)
++|+++++ .++.+| .+..+++|++|++++ |.++.
T Consensus 275 ~~L~Ls~N-~l~~~~-~~~~l~~L~~L~L~~-N~l~~ 308 (310)
T 4glp_A 275 RVLDLSSN-RLNRAP-QPDELPEVDNLTLDG-NPFLV 308 (310)
T ss_dssp SCEECCSC-CCCSCC-CTTSCCCCSCEECSS-TTTSC
T ss_pred CEEECCCC-cCCCCc-hhhhCCCccEEECcC-CCCCC
Confidence 99999994 788877 467889999999998 56653
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=1.5e-16 Score=156.86 Aligned_cols=80 Identities=14% Similarity=-0.001 Sum_probs=63.1
Q ss_pred EEEecCCCCCcc-CCcccccccccEEeccCCCccccc-----ccccCcC-CccEEecCCCchhHHhhHHHhcc-----cc
Q 039954 93 VFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLP-----ESVNKLY-NLHSLLLEDCWELEKLCADMGNL-----AK 160 (578)
Q Consensus 93 ~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp-----~~~~~l~-~L~~L~l~~~~~~~~lp~~l~~l-----~~ 160 (578)
+++++.+.++.. |..+....+|++|++++|.++..+ ..+..++ +|++|++++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 467888888754 666666677999999999998775 5677888 89999999996665556666665 89
Q ss_pred CcccccCCCCcc
Q 039954 161 LHHLKNSNTKSL 172 (578)
Q Consensus 161 L~~L~l~~~~~~ 172 (578)
|++|++++|.+.
T Consensus 82 L~~L~Ls~n~l~ 93 (362)
T 3goz_A 82 VTSLNLSGNFLS 93 (362)
T ss_dssp CCEEECCSSCGG
T ss_pred ccEEECcCCcCC
Confidence 999999999843
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=7.6e-14 Score=129.85 Aligned_cols=167 Identities=18% Similarity=0.254 Sum_probs=122.5
Q ss_pred CchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCcccc
Q 039954 366 SKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPK 445 (578)
Q Consensus 366 ~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 445 (578)
..++.+|..+. ++++.|++++|......+..+..+++|++|++++|...+..+..+..+++|+.|++++|......+.
T Consensus 24 ~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 24 KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh
Confidence 34555665443 4788888888865555566788888899999988766665555677788899999988876655556
Q ss_pred ccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccc
Q 039954 446 GLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASL 524 (578)
Q Consensus 446 ~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 524 (578)
.+..+++|++|++++ .+..++.. .+..+++|+.|++++ +.+..++... +..+++|
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~--------------~~~~l~~L~~L~Ls~--N~l~~~~~~~--------~~~l~~L 157 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSG--------------VFDRLTKLKELRLNT--NQLQSIPAGA--------FDKLTNL 157 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT--------------TTTTCTTCCEEECCS--SCCCCCCTTT--------TTTCTTC
T ss_pred HhcccCCCCEEEcCCCcCCCcChh--------------HhccCCcccEEECcC--CcCCccCHHH--------cCcCcCC
Confidence 678888889998888 77666532 356778889998888 4667776643 2566788
Q ss_pred cEEEeccCCCcccccc-ccCCCCCcceEEeccCCCCc
Q 039954 525 TSLMINNFPNLERLSS-SIVDLQNLTILQLYNCPKLK 560 (578)
Q Consensus 525 ~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~ 560 (578)
++|+++++ .++.++. .+..+++|+.|++++| .+.
T Consensus 158 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~~~ 192 (251)
T 3m19_A 158 QTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGN-QFD 192 (251)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC-CBC
T ss_pred CEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC-cee
Confidence 89999884 7777765 6778888999999884 443
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=4.3e-14 Score=136.07 Aligned_cols=222 Identities=15% Similarity=0.053 Sum_probs=141.1
Q ss_pred CeeEEEeeeCCCCccc--cccCccccccccEEeeeccCCCCCCCCCcCchhhh--cccCcccEEEecCCCCCcc-C----
Q 039954 35 NLRHLSYIRGDYDGVQ--RFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKL--LKLQRLRVFSLRGYRIPEL-P---- 105 (578)
Q Consensus 35 ~~r~ls~~~~~~~~~~--~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~--~~l~~Lr~L~L~~~~i~~l-p---- 105 (578)
.++++.+......... .......+++|+.|.+.+ |.+....|..+ ..+++|++|++++|.++.. +
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLED------LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEES------CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeC------CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHH
Confidence 3566666655543211 122333556788886655 34466677776 6889999999999988643 2
Q ss_pred CcccccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHH--hhHH--HhccccCcccccCCCCcccccCCC--
Q 039954 106 DSVGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEK--LCAD--MGNLAKLHHLKNSNTKSLEEMPVG-- 178 (578)
Q Consensus 106 ~~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~--lp~~--l~~l~~L~~L~l~~~~~~~~lp~~-- 178 (578)
..+..+++|++|++++|.+..++ ..++.+++|++|++++|..... ++.. ++.+++|++|++++|. ++.++..
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~ 217 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCA 217 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHH
T ss_pred HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHH
Confidence 23456889999999999987775 6788899999999999864432 3222 3678899999999998 4444432
Q ss_pred --CCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCC-CCCCceeEEE
Q 039954 179 --IGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGD-SSFSNLVTLK 255 (578)
Q Consensus 179 --i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~ 255 (578)
++.+++|++|+..... +.. ..|..+.. ..+++|+.|+
T Consensus 218 ~l~~~l~~L~~L~Ls~N~------------------------l~~----------------~~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNS------------------------LRA----------------TVNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp HHHHHTCCCSSEECTTSC------------------------CCC----------------CCCSCCSSCCCCTTCCCEE
T ss_pred HHHhcCCCCCEEECCCCC------------------------CCc----------------cchhhHHhccCcCcCCEEE
Confidence 3566777776322110 000 01111111 0136888888
Q ss_pred eccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCC
Q 039954 256 FKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQ 313 (578)
Q Consensus 256 l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 313 (578)
+++|.+......+. ++|++|++++|. ++.++. ...+++|+.|++++++
T Consensus 258 Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~-------~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 258 LSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQ-------PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCC-------TTSCCCCSCEECSSTT
T ss_pred CCCCCCCchhhhhc--CCCCEEECCCCc-CCCCch-------hhhCCCccEEECcCCC
Confidence 98888874333443 788899988886 332221 2337888888888765
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=4.7e-14 Score=145.44 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=53.9
Q ss_pred cccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCC
Q 039954 90 RLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNT 169 (578)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~ 169 (578)
+|++|++++|.++.+|..+. ++|++|++++|.++.+| ..+++|++|++++|.+ ..+|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEECCCC
Confidence 78888888888887877663 77888888888888887 4567888888888743 34665 444 7777777777
Q ss_pred C
Q 039954 170 K 170 (578)
Q Consensus 170 ~ 170 (578)
.
T Consensus 131 ~ 131 (571)
T 3cvr_A 131 Q 131 (571)
T ss_dssp C
T ss_pred c
Confidence 6
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=1.3e-14 Score=129.62 Aligned_cols=106 Identities=10% Similarity=0.181 Sum_probs=66.3
Q ss_pred cccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCccc-ccccccCc
Q 039954 56 YDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRT-LPESVNKL 134 (578)
Q Consensus 56 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~~~~l 134 (578)
.++++|+.|.+.+.. ...+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .|..+..+
T Consensus 41 ~~l~~L~~L~l~~n~-------i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-------VTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSC-------CSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred hhcCCccEEeccCCC-------ccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCC
Confidence 456666666554321 12344 4556677777777777665543 56667777777777776654 45666667
Q ss_pred CCccEEecCCCchhHHhhHHHhccccCcccccCCCC
Q 039954 135 YNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 135 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 170 (578)
++|++|++++|......|..++.+++|++|++++|.
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 777777777765555556666677777777777665
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=8.2e-14 Score=125.63 Aligned_cols=82 Identities=23% Similarity=0.304 Sum_probs=48.6
Q ss_pred CcccEEEecCCCCCccC-CcccccccccEEeccCCCccccccc-ccCcCCccEEecCCCchhHHhhHHHhccccCccccc
Q 039954 89 QRLRVFSLRGYRIPELP-DSVGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKN 166 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 166 (578)
++|++|++++|.++.++ ..+..+++|++|++++|.++.+|.. +..+++|++|++++|......+..++.+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 46666777776666553 3456666677777776666666543 456666666666666332222223456666666666
Q ss_pred CCCC
Q 039954 167 SNTK 170 (578)
Q Consensus 167 ~~~~ 170 (578)
++|.
T Consensus 108 ~~N~ 111 (208)
T 2o6s_A 108 NTNQ 111 (208)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 6665
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=4.3e-14 Score=134.38 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=47.1
Q ss_pred ccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCccccc
Q 039954 87 KLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKN 166 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 166 (578)
.+++|++|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|. +..++. ++.+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEEC
Confidence 5556666666666665553 35566666666666666665554 5666666666666663 333333 566666666666
Q ss_pred CCCC
Q 039954 167 SNTK 170 (578)
Q Consensus 167 ~~~~ 170 (578)
++|.
T Consensus 120 ~~n~ 123 (291)
T 1h6t_A 120 EHNG 123 (291)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 6665
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=1.5e-13 Score=122.55 Aligned_cols=124 Identities=12% Similarity=0.149 Sum_probs=69.6
Q ss_pred CeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCc-cCCccccccc
Q 039954 35 NLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPE-LPDSVGDLRY 113 (578)
Q Consensus 35 ~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l~~ 113 (578)
.++++.+..+.+.. ++.+..+++|++|.+.+.. ...++.+..+++|++|++++|.++. .|..++.+++
T Consensus 45 ~L~~L~l~~n~i~~---l~~l~~l~~L~~L~l~~n~--------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 45 SLTYITLANINVTD---LTGIEYAHNIKDLTINNIH--------ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp TCCEEEEESSCCSC---CTTGGGCTTCSEEEEESCC--------CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred CccEEeccCCCccC---hHHHhcCCCCCEEEccCCC--------CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 45556665555443 2345556666666554321 1222344566666666666666653 3555666666
Q ss_pred ccEEeccCCCccc-ccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCC
Q 039954 114 LRYLNLSGTEIRT-LPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 114 L~~L~L~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 170 (578)
|++|++++|.++. .|..+..+++|++|++++|..+..+| .+..+++|+.|++++|.
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC
Confidence 6666666666553 44556666666666666664344454 46666666666666665
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=3.3e-13 Score=128.30 Aligned_cols=172 Identities=17% Similarity=0.302 Sum_probs=125.0
Q ss_pred CCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccE
Q 039954 352 LPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTR 431 (578)
Q Consensus 352 l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 431 (578)
+++++.|.+ ..+.+..++ .+..+++|++|++++|. ++.++. +..+++|++|++++|... .++. +..+++|+.
T Consensus 45 l~~L~~L~l---~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIA---NNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKS 116 (291)
T ss_dssp HHTCCEEEC---TTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCE
T ss_pred cCcccEEEc---cCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCC-CChh-hccCCCCCE
Confidence 444555433 233444454 46778899999999884 445544 788899999999887543 4443 677889999
Q ss_pred EEeCcCCCCCccccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCC
Q 039954 432 LTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKAD 510 (578)
Q Consensus 432 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 510 (578)
|++++|.. +.+ ..+..+++|++|++++ .+..++ .+..+++|+.|++++ +.+..++. .
T Consensus 117 L~L~~n~i-~~~-~~l~~l~~L~~L~l~~n~l~~~~----------------~l~~l~~L~~L~L~~--N~l~~~~~-l- 174 (291)
T 1h6t_A 117 LSLEHNGI-SDI-NGLVHLPQLESLYLGNNKITDIT----------------VLSRLTKLDTLSLED--NQISDIVP-L- 174 (291)
T ss_dssp EECTTSCC-CCC-GGGGGCTTCCEEECCSSCCCCCG----------------GGGGCTTCSEEECCS--SCCCCCGG-G-
T ss_pred EECCCCcC-CCC-hhhcCCCCCCEEEccCCcCCcch----------------hhccCCCCCEEEccC--Cccccchh-h-
Confidence 99998874 444 4677889999999998 676653 467889999999998 35555543 2
Q ss_pred CCCCCCCCCCCccccEEEeccCCCccccccccCCCCCcceEEeccCCCCcccCC
Q 039954 511 DKGSGTALPLPASLTSLMINNFPNLERLSSSIVDLQNLTILQLYNCPKLKYFPE 564 (578)
Q Consensus 511 ~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~~l~~ 564 (578)
..+++|++|++++| .++.++ .+..+++|+.|++++ +.+...+.
T Consensus 175 --------~~l~~L~~L~L~~N-~i~~l~-~l~~l~~L~~L~l~~-n~i~~~~~ 217 (291)
T 1h6t_A 175 --------AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS-QECLNKPI 217 (291)
T ss_dssp --------TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEE-EEEECCCE
T ss_pred --------cCCCccCEEECCCC-cCCCCh-hhccCCCCCEEECcC-CcccCCcc
Confidence 56789999999995 788887 588899999999998 56655443
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=1.6e-13 Score=143.18 Aligned_cols=99 Identities=27% Similarity=0.411 Sum_probs=59.7
Q ss_pred hhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcc
Q 039954 84 KLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHH 163 (578)
Q Consensus 84 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~ 163 (578)
.+..+++|+.|+|++|.+..++. +..+++|++|+|++|.+..+| .+..+++|++|++++|. +..++ .+..+++|+.
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~ 135 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLES 135 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSE
T ss_pred HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCCCccCE
Confidence 45566777777777776666644 666777777777777666655 46666777777777663 33333 3666667777
Q ss_pred cccCCCCcccccCCCCCCccccccc
Q 039954 164 LKNSNTKSLEEMPVGIGRLTCLQTL 188 (578)
Q Consensus 164 L~l~~~~~~~~lp~~i~~l~~L~~L 188 (578)
|++++|. +..+ ..++.+++|+.|
T Consensus 136 L~Ls~N~-l~~l-~~l~~l~~L~~L 158 (605)
T 1m9s_A 136 LYLGNNK-ITDI-TVLSRLTKLDTL 158 (605)
T ss_dssp EECCSSC-CCCC-GGGGSCTTCSEE
T ss_pred EECCCCc-cCCc-hhhcccCCCCEE
Confidence 7776666 3333 234444444444
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=4.7e-13 Score=122.39 Aligned_cols=98 Identities=26% Similarity=0.305 Sum_probs=67.8
Q ss_pred cCchhhhcccCcccEEEecCCCCCcc-CCcccccccccEEeccCCCccccccc-ccCcCCccEEecCCCchhHHhhHHHh
Q 039954 79 PSILPKLLKLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCWELEKLCADMG 156 (578)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~l~ 156 (578)
..+|..+. ++|++|++++|.+..+ |..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+....+..+.
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 109 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC
Confidence 44444433 6788888888888766 66777888888888888888777643 57788888888888744333333467
Q ss_pred ccccCcccccCCCCcccccCCCC
Q 039954 157 NLAKLHHLKNSNTKSLEEMPVGI 179 (578)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~i 179 (578)
.+++|+.|++++|. ++.+|..+
T Consensus 110 ~l~~L~~L~Ls~N~-l~~lp~~~ 131 (229)
T 3e6j_A 110 RLVHLKELFMCCNK-LTELPRGI 131 (229)
T ss_dssp TCTTCCEEECCSSC-CCSCCTTG
T ss_pred cchhhCeEeccCCc-ccccCccc
Confidence 78888888888877 44555444
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=5.7e-13 Score=120.93 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=83.8
Q ss_pred CcccEEEecCCCCCccC-CcccccccccEEeccCCCcccc-cccccCcCCccEEecCCCchhHHhhHH-HhccccCcccc
Q 039954 89 QRLRVFSLRGYRIPELP-DSVGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCWELEKLCAD-MGNLAKLHHLK 165 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~ 165 (578)
+.|++|++++|.++.++ ..|..+++|++|++++|.++.+ |..+.++++|++|++++|.+ ..+|.. +..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEEE
Confidence 46777777777776664 3667777777777777777665 55677777777777777733 344433 46677777777
Q ss_pred cCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCcCC
Q 039954 166 NSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWLGD 245 (578)
Q Consensus 166 l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (578)
+++|.+....|..+..
T Consensus 111 L~~N~l~~~~~~~~~~---------------------------------------------------------------- 126 (220)
T 2v9t_B 111 LNANKINCLRVDAFQD---------------------------------------------------------------- 126 (220)
T ss_dssp CCSSCCCCCCTTTTTT----------------------------------------------------------------
T ss_pred CCCCCCCEeCHHHcCC----------------------------------------------------------------
Confidence 7777632222222222
Q ss_pred CCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcC
Q 039954 246 SSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMS 283 (578)
Q Consensus 246 ~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 283 (578)
+++|+.|++++|.+.+..+ .+..+++|++|++++|+
T Consensus 127 --l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 127 --LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp --CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --CCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 5677777778887776555 57778888888888776
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=3.8e-13 Score=125.76 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=87.5
Q ss_pred hhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcc
Q 039954 84 KLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHH 163 (578)
Q Consensus 84 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~ 163 (578)
.+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|. +..+++|++|++++|. +..+|. +.. ++|+.
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNG-IPS-ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-CCC-SSCCE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCc-ccc-CcccE
Confidence 3446667777777777666665 56666777777777776666665 6667777777777663 333443 222 66777
Q ss_pred cccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCCCCCCCCCc
Q 039954 164 LKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYGGTNFPAWL 243 (578)
Q Consensus 164 L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (578)
|++++|. ++.++ .++.+++|+.|+.... .+..+ + .+
T Consensus 111 L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N------~i~~~-----------------------------------~-~l 146 (263)
T 1xeu_A 111 LFLDNNE-LRDTD-SLIHLKNLEILSIRNN------KLKSI-----------------------------------V-ML 146 (263)
T ss_dssp EECCSSC-CSBSG-GGTTCTTCCEEECTTS------CCCBC-----------------------------------G-GG
T ss_pred EEccCCc-cCCCh-hhcCcccccEEECCCC------cCCCC-----------------------------------h-HH
Confidence 7777666 33333 3555555555521110 00000 0 00
Q ss_pred CCCCCCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcC
Q 039954 244 GDSSFSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMS 283 (578)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 283 (578)
..+++|+.|++++|.+.+. ..+..+++|+.|++++|.
T Consensus 147 --~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 147 --GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp --GGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred --ccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 1156778888888877654 667777888888887765
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=3.9e-13 Score=140.27 Aligned_cols=82 Identities=27% Similarity=0.372 Sum_probs=38.5
Q ss_pred hcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCccc
Q 039954 85 LLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHL 164 (578)
Q Consensus 85 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 164 (578)
+..+++|+.|+|++|.+..+| .+..+++|++|+|++|.+..++ .+..+++|+.|++++|. +..+ ..++.+++|+.|
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L 158 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTL 158 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEE
T ss_pred hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEE
Confidence 334555555555555544443 3444555555555555544442 24445555555555542 2222 234445555555
Q ss_pred ccCCCC
Q 039954 165 KNSNTK 170 (578)
Q Consensus 165 ~l~~~~ 170 (578)
++++|.
T Consensus 159 ~Ls~N~ 164 (605)
T 1m9s_A 159 SLEDNQ 164 (605)
T ss_dssp ECCSSC
T ss_pred ECcCCc
Confidence 555544
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=118.74 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=96.0
Q ss_pred cCchhhhcccCcccEEEecCCCCCcc-C-CcccccccccEEeccCCCcccccc-cccCcCCccEEecCCCchhHHhhHHH
Q 039954 79 PSILPKLLKLQRLRVFSLRGYRIPEL-P-DSVGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCWELEKLCADM 155 (578)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~l-p-~~i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~l 155 (578)
..+|..+. ..+++|++++|.++.+ | ..+..+++|++|++++|.++.++. .+.++++|++|++++|......+..+
T Consensus 24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 101 (220)
T 2v70_A 24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMF 101 (220)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGG
T ss_pred ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHh
Confidence 34555443 3457888888888776 3 347788888888888888877764 67888888888888885544444557
Q ss_pred hccccCcccccCCCCcccccCCCCCCcccccccCcceeecCCCCCccccccccccccceeeccccCccccchhhhhcCCC
Q 039954 156 GNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCNFVVGNGSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARGYG 235 (578)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 235 (578)
+.+++|+.|++++|.+....|..+..
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------------ 127 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGNDSFIG------------------------------------------------------ 127 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCTTSSTT------------------------------------------------------
T ss_pred cCCcCCCEEECCCCcCCeECHhHcCC------------------------------------------------------
Confidence 78888888888888733322333322
Q ss_pred CCCCCCCcCCCCCCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCC
Q 039954 236 GTNFPAWLGDSSFSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSR 284 (578)
Q Consensus 236 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 284 (578)
+++|+.|++++|.+.+..+ .+..+++|+.|++++|+.
T Consensus 128 ------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 128 ------------LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ------------CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ------------CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 5567777778887776655 677788888888887763
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=1.8e-15 Score=156.91 Aligned_cols=63 Identities=24% Similarity=0.304 Sum_probs=37.0
Q ss_pred cCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCcccc-CCCCcCCCCccEEEeCcCCC
Q 039954 375 LDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESF-PEGGLPCAKLTRLTILDCKR 439 (578)
Q Consensus 375 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 439 (578)
++++++|+.|++++|. ++.+| .+..+++|++|++++|...+.. |..+..+++|+.|++++|+.
T Consensus 482 ~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 482 LAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp GGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred hhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 3445566666666663 33455 5666666666666665444333 55556666666666666653
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=2.6e-13 Score=117.76 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=70.5
Q ss_pred ccCcccEEEecCCCCC--ccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCccc
Q 039954 87 KLQRLRVFSLRGYRIP--ELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHL 164 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 164 (578)
..+.|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..++.+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4477889999988887 7888888889999999998888877 678888899999998886555577777788899999
Q ss_pred ccCCCCccccc
Q 039954 165 KNSNTKSLEEM 175 (578)
Q Consensus 165 ~l~~~~~~~~l 175 (578)
++++|. ++.+
T Consensus 101 ~Ls~N~-l~~~ 110 (168)
T 2ell_A 101 NLSGNK-LKDI 110 (168)
T ss_dssp ECBSSS-CCSS
T ss_pred eccCCc-cCcc
Confidence 998887 4433
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=4.2e-12 Score=115.17 Aligned_cols=140 Identities=17% Similarity=0.223 Sum_probs=87.7
Q ss_pred chhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccc
Q 039954 367 KLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKG 446 (578)
Q Consensus 367 ~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 446 (578)
.++.+|..+. ++|+.|++++|......+..+..+++|++|++++|......|..+..+++|+.|++++|......+..
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence 3445554333 46777777777433333446677777777777776655555666777777777777777644333334
Q ss_pred cCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCcccc
Q 039954 447 LHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLT 525 (578)
Q Consensus 447 ~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 525 (578)
|.++++|++|++++ .+..++.. .+..+++|+.|++++ +.+..++.+. +..+++|+
T Consensus 100 f~~l~~L~~L~L~~N~l~~~~~~--------------~~~~l~~L~~L~L~~--N~l~~~~~~~--------~~~l~~L~ 155 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCLRVD--------------AFQDLHNLNLLSLYD--NKLQTIAKGT--------FSPLRAIQ 155 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT--------------TTTTCTTCCEEECCS--SCCSCCCTTT--------TTTCTTCC
T ss_pred ccCCCCCCEEECCCCCCCEeCHH--------------HcCCCCCCCEEECCC--CcCCEECHHH--------HhCCCCCC
Confidence 56777777777777 66555422 356667777777776 4556665543 24556777
Q ss_pred EEEeccC
Q 039954 526 SLMINNF 532 (578)
Q Consensus 526 ~L~l~~~ 532 (578)
+|+++++
T Consensus 156 ~L~L~~N 162 (220)
T 2v9t_B 156 TMHLAQN 162 (220)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 7777774
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=4.9e-12 Score=115.55 Aligned_cols=140 Identities=21% Similarity=0.228 Sum_probs=93.9
Q ss_pred CchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccC-CCCcCCCCccEEEeCcCCCCCccc
Q 039954 366 SKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFP-EGGLPCAKLTRLTILDCKRLEALP 444 (578)
Q Consensus 366 ~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~ 444 (578)
..++.+|..+. ++|++|++++|......+..+..+++|++|++++|.. +.++ ..+..+++|+.|++++|......+
T Consensus 29 ~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 29 KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccCh
Confidence 34455554333 6788888888765554466777888888888888665 3444 345677888888888876544444
Q ss_pred cccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCcc
Q 039954 445 KGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPAS 523 (578)
Q Consensus 445 ~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (578)
..+..+++|++|++++ .+..++. .+..+++|+.|++++ +.+..++... +..+++
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~~lp~---------------~~~~l~~L~~L~L~~--N~l~~~~~~~--------~~~l~~ 160 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLTELPR---------------GIERLTHLTHLALDQ--NQLKSIPHGA--------FDRLSS 160 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCT---------------TGGGCTTCSEEECCS--SCCCCCCTTT--------TTTCTT
T ss_pred hHhCcchhhCeEeccCCcccccCc---------------ccccCCCCCEEECCC--CcCCccCHHH--------HhCCCC
Confidence 4567788888888887 6665542 356677888888877 4666666543 245677
Q ss_pred ccEEEeccCC
Q 039954 524 LTSLMINNFP 533 (578)
Q Consensus 524 L~~L~l~~~~ 533 (578)
|++|++++++
T Consensus 161 L~~L~l~~N~ 170 (229)
T 3e6j_A 161 LTHAYLFGNP 170 (229)
T ss_dssp CCEEECTTSC
T ss_pred CCEEEeeCCC
Confidence 8888887753
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=3e-13 Score=126.45 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=73.3
Q ss_pred ccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCccccc
Q 039954 87 KLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKN 166 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 166 (578)
.+..+..++++++.++.++ .+..+++|++|++++|.++.+| .+..+++|++|++++|. +..++. ++.+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 6777888899999998887 6889999999999999999998 68999999999999994 455555 999999999999
Q ss_pred CCCCcccccC
Q 039954 167 SNTKSLEEMP 176 (578)
Q Consensus 167 ~~~~~~~~lp 176 (578)
++|. ++.+|
T Consensus 93 ~~N~-l~~l~ 101 (263)
T 1xeu_A 93 NRNR-LKNLN 101 (263)
T ss_dssp CSSC-CSCCT
T ss_pred CCCc-cCCcC
Confidence 9998 45454
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=5.3e-12 Score=130.21 Aligned_cols=139 Identities=22% Similarity=0.260 Sum_probs=68.1
Q ss_pred CCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEe
Q 039954 379 TSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTI 458 (578)
Q Consensus 379 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 458 (578)
++|++|++++|. ++.+|. +.. +|++|++++|...+ +|. .+++|+.|++++|.. +.+|. .+++|++|++
T Consensus 100 ~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 100 ASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSV 167 (571)
T ss_dssp TTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEEC
T ss_pred CCCCEEEccCCC-CCCcch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEEC
Confidence 456666666653 333544 322 56666666543332 444 345666666666553 33443 3456666666
Q ss_pred cC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCccc
Q 039954 459 GG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLER 537 (578)
Q Consensus 459 ~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 537 (578)
++ .+..++. +. ++|+.|++++ +.+..+|. ... ......+.|+.|++++ +.++.
T Consensus 168 s~N~L~~lp~----------------l~--~~L~~L~Ls~--N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~-N~l~~ 221 (571)
T 3cvr_A 168 RNNQLTFLPE----------------LP--ESLEALDVST--NLLESLPA-VPV----RNHHSEETEIFFRCRE-NRITH 221 (571)
T ss_dssp CSSCCSCCCC----------------CC--TTCCEEECCS--SCCSSCCC-CC------------CCEEEECCS-SCCCC
T ss_pred CCCCCCCcch----------------hh--CCCCEEECcC--CCCCchhh-HHH----hhhcccccceEEecCC-Cccee
Confidence 65 4544432 11 4566666665 34445553 100 0001111226666666 35666
Q ss_pred cccccCCCCCcceEEecc
Q 039954 538 LSSSIVDLQNLTILQLYN 555 (578)
Q Consensus 538 i~~~~~~l~~L~~L~l~~ 555 (578)
+|..+..+++|+.|++++
T Consensus 222 lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 222 IPENILSLDPTCTIILED 239 (571)
T ss_dssp CCGGGGGSCTTEEEECCS
T ss_pred cCHHHhcCCCCCEEEeeC
Confidence 665555566666666666
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=4e-13 Score=113.94 Aligned_cols=107 Identities=19% Similarity=0.150 Sum_probs=59.2
Q ss_pred CchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCccc-ccccccCcCCccEEecCCCchhH-HhhHHHhc
Q 039954 80 SILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRT-LPESVNKLYNLHSLLLEDCWELE-KLCADMGN 157 (578)
Q Consensus 80 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~-~lp~~l~~ 157 (578)
.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|++++|.... ..+..++.
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~ 111 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK 111 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhh
Confidence 4454445666666666666666555 555666666666666666654 55555556666666666663322 12244566
Q ss_pred cccCcccccCCCCcccccCC----CCCCccccccc
Q 039954 158 LAKLHHLKNSNTKSLEEMPV----GIGRLTCLQTL 188 (578)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~----~i~~l~~L~~L 188 (578)
+++|++|++++|. ++.+|. .++.+++|+.|
T Consensus 112 l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 112 LENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp CTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEE
T ss_pred CCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccc
Confidence 6666666666665 333333 34444444444
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=4.1e-12 Score=124.89 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=52.8
Q ss_pred ceeecccccccccCCCCCCCC-CcceEEEEecCCchhhHHHh-cC-CCCCccEEEeecCCCCcccccCCCCCCCcceEEe
Q 039954 334 RELHILRCSKLQGTFPEHLPA-LEKLSLYVYGCSKLESIAER-LD-NNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRI 410 (578)
Q Consensus 334 ~~L~l~~~~~l~~~~~~~l~~-l~~L~l~~~~~~~l~~i~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 410 (578)
+.++.+++ .++ .+|..++. ++.|.+ +.+.++.++.. +. ++++|++|++++|......+..+..+++|++|++
T Consensus 21 ~~l~c~~~-~l~-~iP~~~~~~l~~L~L---s~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQ-QLP-NVPQSLPSYTALLDL---SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSS-CCS-SCCSSCCTTCSEEEC---CSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCC-CcC-ccCccCCCCCCEEEC---CCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 46666665 566 56654432 222221 12222222221 22 4444444444444222222233444444444444
Q ss_pred ccCCCccccCCCCcCCCCccEEEeCcCCCCCccccccCCCCCccEEEecC-CcCCc
Q 039954 411 QKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKGLHNLTSLQELTIGG-ELPSL 465 (578)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~l~~l 465 (578)
++|......+..+..+++|+.|++++|......+..|..+++|++|+|++ .+..+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence 44433222222334444444444444443333334444444444444444 44333
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=3.9e-12 Score=110.26 Aligned_cols=137 Identities=26% Similarity=0.260 Sum_probs=86.6
Q ss_pred CCCCCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCc-cCCccc
Q 039954 31 SFSENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPE-LPDSVG 109 (578)
Q Consensus 31 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~ 109 (578)
..+..++++.+..+.+....-...+..+++|+.|.+.+.. +. .+ ..+..+++|++|++++|.++. +|..+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------CC-CC-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------CC-Ch-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 4456677777776665411112334667777777554422 22 22 455577777777777777766 555566
Q ss_pred ccccccEEeccCCCccccc--ccccCcCCccEEecCCCchhHHhhH----HHhccccCcccccCCCCcccccCC
Q 039954 110 DLRYLRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCWELEKLCA----DMGNLAKLHHLKNSNTKSLEEMPV 177 (578)
Q Consensus 110 ~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~l~~~~~~~~lp~ 177 (578)
.+++|++|++++|.++.+| ..+..+++|++|++++|.. ..+|. .+..+++|+.|++++|. ...+|.
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 6777777777777777665 5677777777777777743 33333 56777777777777776 444443
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=9.7e-13 Score=111.55 Aligned_cols=130 Identities=25% Similarity=0.258 Sum_probs=93.4
Q ss_pred CCCCCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCc-cCCccc
Q 039954 31 SFSENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPE-LPDSVG 109 (578)
Q Consensus 31 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~ 109 (578)
..+.+++++.+..+.+........+..+++|+.|.+.+. .+. .+ ..+..+++|++|++++|.++. +|..+.
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n------~l~-~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV------GLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS------CCC-CC-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC------CCC-Cc-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 345678888888777652122345577888888855432 222 22 556688899999999988876 677777
Q ss_pred ccccccEEeccCCCccccc--ccccCcCCccEEecCCCchhHHhh---HHHhccccCcccccCC
Q 039954 110 DLRYLRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCWELEKLC---ADMGNLAKLHHLKNSN 168 (578)
Q Consensus 110 ~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~lp---~~l~~l~~L~~L~l~~ 168 (578)
.+++|++|++++|.++.+| ..+..+++|++|++++|......+ ..++.+++|+.|++++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7889999999998888765 778888899999999885433322 3678888898888753
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=4.3e-12 Score=112.49 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=51.1
Q ss_pred cEEEecCCCCCccCCcccccccccEEeccCCCccccccc--ccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCC
Q 039954 92 RVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPES--VNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNT 169 (578)
Q Consensus 92 r~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~--~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~ 169 (578)
++++++++.++.+|..+.. +|++|++++|.++.++.. +..+++|++|++++|.+....|..++.+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5667777777777665543 677777777777666542 667777777777777544444556677777777777777
Q ss_pred C
Q 039954 170 K 170 (578)
Q Consensus 170 ~ 170 (578)
.
T Consensus 89 ~ 89 (192)
T 1w8a_A 89 K 89 (192)
T ss_dssp C
T ss_pred c
Confidence 6
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=3.8e-12 Score=115.48 Aligned_cols=126 Identities=14% Similarity=0.099 Sum_probs=93.6
Q ss_pred ccccEEeeeccCCCCCCCCCcCchhh-hcccCcccEEEecCCCCCccC-CcccccccccEEeccCCCcccccc-cccCcC
Q 039954 59 QHLRTFLPVMLSNSEPGYLAPSILPK-LLKLQRLRVFSLRGYRIPELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVNKLY 135 (578)
Q Consensus 59 ~~Lr~L~~~~~~~~~~~~~~~~~~~~-~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~~~~l~ 135 (578)
..++.|.+.+ |.+....+.. |..+++|++|++++|.++.++ ..|..+++|++|++++|.++.+|. .+..++
T Consensus 32 ~~~~~L~L~~------N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 105 (220)
T 2v70_A 32 QYTAELRLNN------NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE 105 (220)
T ss_dssp TTCSEEECCS------SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS
T ss_pred CCCCEEEcCC------CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc
Confidence 3456664433 3333332434 448889999999999888774 478889999999999998887764 478889
Q ss_pred CccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccccCc
Q 039954 136 NLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCN 190 (578)
Q Consensus 136 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~~ 190 (578)
+|++|++++|.+....|..+..+++|++|++++|.+.+..|..+..+++|+.|..
T Consensus 106 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 106 SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 9999999988655555677888899999999998855555777888888888743
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=9.5e-12 Score=110.18 Aligned_cols=77 Identities=18% Similarity=0.222 Sum_probs=50.9
Q ss_pred cEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCC
Q 039954 92 RVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 92 r~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 170 (578)
++++++++.++.+|..+. .+|++|++++|.++.+|..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 456677777776665543 46777777777777777667777777777777764433333456677777777777776
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=6.3e-11 Score=106.57 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=111.5
Q ss_pred chhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccccc
Q 039954 367 KLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALPKG 446 (578)
Q Consensus 367 ~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 446 (578)
.++.+|.. -.++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|...+..+..
T Consensus 18 ~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 18 GRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp CCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CccCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 34445532 2458899999988544333445678899999999887555433444577889999999988755444455
Q ss_pred cCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCcccc
Q 039954 447 LHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLT 525 (578)
Q Consensus 447 ~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 525 (578)
+..+++|++|++++ .+..++.. .+..+++|+.|++++ +.+..++... +..+++|+
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~--------------~~~~l~~L~~L~l~~--N~l~~~~~~~--------~~~l~~L~ 151 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDG--------------VFDKLTQLKDLRLYQ--NQLKSVPDGV--------FDRLTSLQ 151 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT--------------TTTTCTTCCEEECCS--SCCSCCCTTT--------TTTCTTCC
T ss_pred hcCccCCCEEEcCCCcCcccCHh--------------HhccCCcCCEEECCC--CccceeCHHH--------hccCCCcc
Confidence 78889999999988 77665532 356788899999988 4566666543 24668889
Q ss_pred EEEeccCCCccccccccCCCCCcceEEeccCCCCc-ccC
Q 039954 526 SLMINNFPNLERLSSSIVDLQNLTILQLYNCPKLK-YFP 563 (578)
Q Consensus 526 ~L~l~~~~~l~~i~~~~~~l~~L~~L~l~~c~~l~-~l~ 563 (578)
+|++++++- ...+++|++|+++. ++++ .+|
T Consensus 152 ~L~l~~N~~-------~~~~~~l~~L~~~~-n~~~g~ip 182 (208)
T 2o6s_A 152 YIWLHDNPW-------DCTCPGIRYLSEWI-NKHSGVVR 182 (208)
T ss_dssp EEECCSCCB-------CCCTTTTHHHHHHH-HHCTTTBB
T ss_pred EEEecCCCe-------ecCCCCHHHHHHHH-HhCCceee
Confidence 999988632 23456788888777 3444 344
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.25 E-value=6.9e-11 Score=116.10 Aligned_cols=167 Identities=14% Similarity=0.134 Sum_probs=115.8
Q ss_pred CchhhHHHhcCCCCCccEEEeecCCCCcccccCCC-CCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCccc
Q 039954 366 SKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLH-NLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEALP 444 (578)
Q Consensus 366 ~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 444 (578)
..++.+|..+. +.++.|++++|......+..+. .+++|++|++++|......+..+..+++|+.|++++|......+
T Consensus 28 ~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 105 (361)
T 2xot_A 28 QQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105 (361)
T ss_dssp SCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH
Confidence 44566665443 3688899988854433344455 78889999998876655555567788899999998887544445
Q ss_pred cccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCcc
Q 039954 445 KGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPAS 523 (578)
Q Consensus 445 ~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (578)
..|.++++|++|++++ .+..++. ..+.++++|+.|++++ +.+..++...+. ....+++
T Consensus 106 ~~~~~l~~L~~L~L~~N~i~~~~~--------------~~~~~l~~L~~L~L~~--N~l~~l~~~~~~-----~~~~l~~ 164 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNHIVVVDR--------------NAFEDMAQLQKLYLSQ--NQISRFPVELIK-----DGNKLPK 164 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECT--------------TTTTTCTTCCEEECCS--SCCCSCCGGGTC---------CTT
T ss_pred HHhCCCcCCCEEECCCCcccEECH--------------HHhCCcccCCEEECCC--CcCCeeCHHHhc-----CcccCCc
Confidence 5678888999999988 6665542 2467788888998888 567777764410 0124678
Q ss_pred ccEEEeccCCCcccccc-ccCCCCC--cceEEeccC
Q 039954 524 LTSLMINNFPNLERLSS-SIVDLQN--LTILQLYNC 556 (578)
Q Consensus 524 L~~L~l~~~~~l~~i~~-~~~~l~~--L~~L~l~~c 556 (578)
|++|++++ +.++.+|. .+..++. ++.|+++++
T Consensus 165 L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 165 LMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCEEECCC-CCCCccCHHHhhhccHhhcceEEecCC
Confidence 88888888 47877775 5666666 478888874
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=6.3e-12 Score=109.75 Aligned_cols=125 Identities=19% Similarity=0.174 Sum_probs=78.8
Q ss_pred cCccccccccEEeeeccCCCCCCCCCcCchhhhcccC-cccEEEecCCCCCccCCcccccccccEEeccCCCcccccccc
Q 039954 53 GDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQ-RLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESV 131 (578)
Q Consensus 53 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~ 131 (578)
+.+.++.+|+.|.+.+. .+ ..++ .+..+. +|++|++++|.++.+ ..+..+++|++|++++|.++.+|..+
T Consensus 13 ~~~~~~~~L~~L~l~~n------~l-~~i~-~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGY------KI-PVIE-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTS------CC-CSCC-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCC------CC-chhH-HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 33455666677644332 22 2332 344333 777777777777766 56777777777777777777776544
Q ss_pred -cCcCCccEEecCCCchhHHhhH--HHhccccCcccccCCCCcccccCCC----CCCccccccc
Q 039954 132 -NKLYNLHSLLLEDCWELEKLCA--DMGNLAKLHHLKNSNTKSLEEMPVG----IGRLTCLQTL 188 (578)
Q Consensus 132 -~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~lp~~----i~~l~~L~~L 188 (578)
..+++|++|++++|. +..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEE
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCcccee
Confidence 677777777777773 345554 56777777777777777 4455553 5666666666
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=1.3e-11 Score=109.28 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=53.1
Q ss_pred cccEEEecCCCCCccCC--cccccccccEEeccCCCcccc-cccccCcCCccEEecCCCchhHHhhHHHhccccCccccc
Q 039954 90 RLRVFSLRGYRIPELPD--SVGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKN 166 (578)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 166 (578)
.|++|++++|.++.++. .++.+++|++|++++|.++.+ |..+.++++|++|++++|.+....+..++.+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 55555666555555533 255555666666665555544 345555556666666555433333333555555666666
Q ss_pred CCCCcccccCCCCCCccccccc
Q 039954 167 SNTKSLEEMPVGIGRLTCLQTL 188 (578)
Q Consensus 167 ~~~~~~~~lp~~i~~l~~L~~L 188 (578)
++|.+.+..|..++.+++|+.|
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEE
T ss_pred CCCcCCeeCHHHhhcCCCCCEE
Confidence 6555444444555555555555
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.21 E-value=9.3e-12 Score=133.31 Aligned_cols=150 Identities=18% Similarity=0.172 Sum_probs=93.1
Q ss_pred CCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCccccccc
Q 039954 34 ENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRY 113 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~ 113 (578)
..++++++..+..... ........+|+.+.+.+... .++. ....+..+..++.|++|+|++|.+..+|..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~--~~~~l~~l~Ls~~~i~~~~~-~~n~-~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA--NQALLQHKKLSQYSIDEDDD-IENR-MVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF 248 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcc--hhhHhhcCccCcccccCccc-cccc-eecChhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence 3467777766555432 23333445555554433221 1112 223345555999999999999999999888889999
Q ss_pred ccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCCcccccccC
Q 039954 114 LRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTCLQTLC 189 (578)
Q Consensus 114 L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 189 (578)
|++|+|++|.++.+|..++++++|++|+|++|.+ ..+|..++.+++|++|++++|. ++.+|..++.+++|+.|.
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcC-CccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEe
Confidence 9999999999999999999999999999999954 4889999999999999999998 678999999999999884
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=2e-11 Score=108.01 Aligned_cols=99 Identities=20% Similarity=0.291 Sum_probs=62.4
Q ss_pred CcccEEEecCCCCCccCCcccccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhHHHhccccCcccccC
Q 039954 89 QRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNS 167 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~ 167 (578)
++|++|++++|.++.+|..+..+++|++|++++|.++.++ ..+.++++|++|++++|.+....|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4566777777776666666666777777777777666665 346666777777777664433334456666777777777
Q ss_pred CCCcccccCC-CCCCccccccc
Q 039954 168 NTKSLEEMPV-GIGRLTCLQTL 188 (578)
Q Consensus 168 ~~~~~~~lp~-~i~~l~~L~~L 188 (578)
+|. ++.+|. .+..+++|+.|
T Consensus 111 ~N~-l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 111 GND-ISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEE
T ss_pred CCC-CCeeChhhhhcCccccEE
Confidence 766 444444 35666666655
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=1.1e-10 Score=113.14 Aligned_cols=87 Identities=13% Similarity=0.112 Sum_probs=43.1
Q ss_pred CCceeEEEeccCCCCCCCCCCCCCCCcceeeecCcCCceecCccccCC---CCCCCCCCCCeeeeccCCCccccccCCCC
Q 039954 248 FSNLVTLKFKNCDMCTALPSVGQLPSLTHLAVCGMSRVKRLGSEFYGN---DAPIPFPCLETLHFEDMQGWEDWIPHGSS 324 (578)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 324 (578)
+++|+.|++++|.+......-+.++.+..+....+ .++...+.+ .....+++|+++.+.+ .+.......
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~a-- 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAA-- 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTT--
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc--cccchhHHH--
Confidence 56889999998887621111122333333333332 121111100 0001167777777765 233222221
Q ss_pred CccccCcccceeecccccccc
Q 039954 325 QGVERFPKLRELHILRCSKLQ 345 (578)
Q Consensus 325 ~~~~~~~~L~~L~l~~~~~l~ 345 (578)
+.++++|+.+++.++ .+.
T Consensus 120 --F~~~~~L~~l~l~~n-~i~ 137 (329)
T 3sb4_A 120 --FKGCDNLKICQIRKK-TAP 137 (329)
T ss_dssp --TTTCTTCCEEEBCCS-SCC
T ss_pred --hhcCcccceEEcCCC-Ccc
Confidence 677888888888876 444
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=6.2e-11 Score=103.39 Aligned_cols=126 Identities=14% Similarity=0.090 Sum_probs=102.5
Q ss_pred CCCeeEEEeeeCCCCccccccCccccc-cccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcc-cc
Q 039954 33 SENLRHLSYIRGDYDGVQRFGDLYDIQ-HLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSV-GD 110 (578)
Q Consensus 33 ~~~~r~ls~~~~~~~~~~~~~~~~~~~-~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~ 110 (578)
+..++.+.+..+.+.. ++.+..+. +|+.|.+.+ |.+. .+ ..+..+++|++|++++|.++.+|..+ ..
T Consensus 18 ~~~L~~L~l~~n~l~~---i~~~~~~~~~L~~L~Ls~------N~l~-~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV---IENLGATLDQFDAIDFSD------NEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp TTSCEEEECTTSCCCS---CCCGGGGTTCCSEEECCS------SCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCCceEEEeeCCCCch---hHHhhhcCCCCCEEECCC------CCCC-cc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 4578889888887764 34555555 899995544 2333 33 56779999999999999999997655 89
Q ss_pred cccccEEeccCCCcccccc--cccCcCCccEEecCCCchhHHhhHH----HhccccCcccccCCCC
Q 039954 111 LRYLRYLNLSGTEIRTLPE--SVNKLYNLHSLLLEDCWELEKLCAD----MGNLAKLHHLKNSNTK 170 (578)
Q Consensus 111 l~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~----l~~l~~L~~L~l~~~~ 170 (578)
+++|++|++++|.++.+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|+++.|.
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999999999987 78999999999999995 4566664 8999999999999987
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=4.7e-11 Score=123.78 Aligned_cols=97 Identities=25% Similarity=0.265 Sum_probs=61.6
Q ss_pred cccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCC
Q 039954 90 RLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNT 169 (578)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~ 169 (578)
.|++|++++|.++.+|. ++.+++|++|++++|.++.+|..++.+++|++|++++|. +..+| .++.+++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCC
Confidence 46666666666666665 666666666666666666666666666666666666663 33455 5666666666666666
Q ss_pred Cccccc-CCCCCCcccccccC
Q 039954 170 KSLEEM-PVGIGRLTCLQTLC 189 (578)
Q Consensus 170 ~~~~~l-p~~i~~l~~L~~L~ 189 (578)
.+.+.. |..++.+++|+.|.
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEE
Confidence 633222 56666666666663
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=2.1e-13 Score=121.72 Aligned_cols=89 Identities=21% Similarity=0.253 Sum_probs=74.3
Q ss_pred cCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHhhHHHhcc
Q 039954 79 PSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKLCADMGNL 158 (578)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l 158 (578)
..+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .++.+
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l 114 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKL 114 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccC
Confidence 344557778999999999999888887 8888999999999999988888878888899999999884 44566 58888
Q ss_pred ccCcccccCCCC
Q 039954 159 AKLHHLKNSNTK 170 (578)
Q Consensus 159 ~~L~~L~l~~~~ 170 (578)
++|++|++++|.
T Consensus 115 ~~L~~L~l~~N~ 126 (198)
T 1ds9_A 115 VNLRVLYMSNNK 126 (198)
T ss_dssp HHSSEEEESEEE
T ss_pred CCCCEEECCCCc
Confidence 999999998887
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=2.1e-11 Score=130.53 Aligned_cols=121 Identities=22% Similarity=0.277 Sum_probs=100.9
Q ss_pred cCccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCccccccccc
Q 039954 53 GDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVN 132 (578)
Q Consensus 53 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~ 132 (578)
..+..++.|+.|.+.+ |. ...+|..++++++|++|+|++|.++.+|..|+.+++|++|+|++|.++.+|..++
T Consensus 218 ~~~~~l~~L~~L~Ls~------n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSN------LQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp ----CCCCCCEEECTT------SC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred hhhccCCCCcEEECCC------CC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 4566788888885543 23 3478888889999999999999999999999999999999999999999999999
Q ss_pred CcCCccEEecCCCchhHHhhHHHhccccCcccccCCCCcccccCCCCCC
Q 039954 133 KLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGR 181 (578)
Q Consensus 133 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~i~~ 181 (578)
.+++|++|+|++| .+..+|..++.+++|++|++++|.+.+.+|..+..
T Consensus 291 ~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 291 SCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp GGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 9999999999999 45688888999999999999999966566655443
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.13 E-value=3.2e-09 Score=105.61 Aligned_cols=143 Identities=19% Similarity=0.196 Sum_probs=64.7
Q ss_pred CCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCcc-ccccCCCCCcc
Q 039954 376 DNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEAL-PKGLHNLTSLQ 454 (578)
Q Consensus 376 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~ 454 (578)
.++..|+.+.+..+ ........+..+..++.+...... .....+..+.+|+.+.+.++ ++.+ ...|.+|.+|+
T Consensus 250 ~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 250 YGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCC
T ss_pred cccccceeEEcCCC-cceeeccccccccccceeccCcee---eccccccccccccccccccc--cceechhhhcCCCCCC
Confidence 44555555555443 222223444555555555553321 11113344555555555432 2322 22455555565
Q ss_pred EEEecCCcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCC
Q 039954 455 ELTIGGELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPN 534 (578)
Q Consensus 455 ~L~l~~~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 534 (578)
.+++...++.+. ..+|.+|.+|+.+.+.. .+..+....+ ..+++|+.+++.. .
T Consensus 324 ~i~lp~~v~~I~--------------~~aF~~c~~L~~i~lp~---~l~~I~~~aF--------~~C~~L~~i~lp~--~ 376 (394)
T 4fs7_A 324 SIDLPYLVEEIG--------------KRSFRGCTSLSNINFPL---SLRKIGANAF--------QGCINLKKVELPK--R 376 (394)
T ss_dssp EECCCTTCCEEC--------------TTTTTTCTTCCEECCCT---TCCEECTTTB--------TTCTTCCEEEEEG--G
T ss_pred EEEeCCcccEEh--------------HHhccCCCCCCEEEECc---cccEehHHHh--------hCCCCCCEEEECC--C
Confidence 555544333332 12455555666655543 2444444332 3445555555543 3
Q ss_pred ccccccccCCCCCcceE
Q 039954 535 LERLSSSIVDLQNLTIL 551 (578)
Q Consensus 535 l~~i~~~~~~l~~L~~L 551 (578)
++.+..++.++++|+.+
T Consensus 377 ~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGGGGBCTTCEEEEE
T ss_pred CEEhhheecCCCCCcEE
Confidence 44443345555555443
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.11 E-value=3.3e-10 Score=98.88 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=39.1
Q ss_pred cEEEecCCCCCccCCcccccccccEEeccCCCcccccc-cccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCC
Q 039954 92 RVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 92 r~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 170 (578)
+.++++++.++.+|..+. .+|++|++++|.++.+|. .+..+++|++|++++|......+..++.+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 445555555555554332 455555555555555543 23555555555555553222222224555556666665555
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.07 E-value=2.2e-08 Score=99.12 Aligned_cols=241 Identities=12% Similarity=0.179 Sum_probs=145.3
Q ss_pred CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCccccCcccceeeccccccccc
Q 039954 267 SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQGVERFPKLRELHILRCSKLQG 346 (578)
Q Consensus 267 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 346 (578)
.+..+ +|+.+.+..+ ++.++...+.+ .+|+++.+.. .+....... +..+++|+.+++.++ .++
T Consensus 131 aF~~~-~L~~i~l~~~--i~~I~~~aF~~------~~L~~i~lp~--~l~~I~~~a----F~~c~~L~~l~l~~n-~l~- 193 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG--LKSIGDMAFFN------STVQEIVFPS--TLEQLKEDI----FYYCYNLKKADLSKT-KIT- 193 (401)
T ss_dssp TTTTC-CCSEEECCTT--CCEECTTTTTT------CCCCEEECCT--TCCEECSST----TTTCTTCCEEECTTS-CCS-
T ss_pred hcccC-CccEEEeCCC--ccEECHHhcCC------CCceEEEeCC--CccEehHHH----hhCcccCCeeecCCC-cce-
Confidence 33443 6777777554 44454433221 2466666653 222221111 667788888888775 454
Q ss_pred CCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCccc-ccCCCCCCCcceEEeccCCCccccCCCCcC
Q 039954 347 TFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTL-PSGLHNLGQLQEIRIQKCRNLESFPEGGLP 425 (578)
Q Consensus 347 ~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 425 (578)
.++.. .+. +.+|+.+.+..+ ++.+ ..+|.++++|+.+.+.++ +..++.....
T Consensus 194 ~I~~~----------------------aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~ 246 (401)
T 4fdw_A 194 KLPAS----------------------TFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFR 246 (401)
T ss_dssp EECTT----------------------TTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTT
T ss_pred Eechh----------------------hEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccc
Confidence 23321 111 346777777653 4444 566777888888888753 4455443322
Q ss_pred CCCccEEEeCcCCCCCcc-ccccCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCcc
Q 039954 426 CAKLTRLTILDCKRLEAL-PKGLHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMV 503 (578)
Q Consensus 426 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~ 503 (578)
-.+|+.+.+.+ . ++.+ ...|.+|++|+.+++.+ .+..-+ ...+....|.+|++|+.+++.+ .+.
T Consensus 247 ~~~L~~i~lp~-~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~---------~~~I~~~aF~~c~~L~~l~l~~---~i~ 312 (401)
T 4fdw_A 247 ESGITTVKLPN-G-VTNIASRAFYYCPELAEVTTYGSTFNDDP---------EAMIHPYCLEGCPKLARFEIPE---SIR 312 (401)
T ss_dssp TCCCSEEEEET-T-CCEECTTTTTTCTTCCEEEEESSCCCCCT---------TCEECTTTTTTCTTCCEECCCT---TCC
T ss_pred cCCccEEEeCC-C-ccEEChhHhhCCCCCCEEEeCCccccCCc---------ccEECHHHhhCCccCCeEEeCC---ceE
Confidence 36788888843 2 3433 45678888888888877 222000 0112344678888888888865 467
Q ss_pred ccCCCCCCCCCCCCCCCCccccEEEeccCCCcccccc-ccCCCCCcceEEeccCCCCcccCCC---CCCCcccceEec
Q 039954 504 SFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSS-SIVDLQNLTILQLYNCPKLKYFPEK---GLPSSLLELDIN 577 (578)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~sL~~l~l~ 577 (578)
.+....+ ..+++|+.+.|.. +++.|+. ++.++ +|+++++.+ +.+..++.. +++.+++.|++.
T Consensus 313 ~I~~~aF--------~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 313 ILGQGLL--------GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp EECTTTT--------TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred EEhhhhh--------cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeC
Confidence 7776553 5667888888865 5777766 77888 888888887 566666554 345577777764
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=1.2e-09 Score=105.68 Aligned_cols=216 Identities=12% Similarity=0.160 Sum_probs=136.4
Q ss_pred Ccccceeecccccc---cccCCCCCCCCCcceEEEEecCC-------chh----------hHHH-hcCC--------CCC
Q 039954 330 FPKLRELHILRCSK---LQGTFPEHLPALEKLSLYVYGCS-------KLE----------SIAE-RLDN--------NTS 380 (578)
Q Consensus 330 ~~~L~~L~l~~~~~---l~~~~~~~l~~l~~L~l~~~~~~-------~l~----------~i~~-~~~~--------l~~ 380 (578)
+++++.|.+.+.-. +. .+...+++|+.|++...... .+. .+|. .|.+ |++
T Consensus 24 ~~~l~~L~l~g~i~~~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFR-HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHCSEEEEEEEECHHHHH-HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hCceeEEEEeccccHHHHH-HHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 55677777765311 11 11122667777776555443 110 1222 3455 778
Q ss_pred ccEEEeecCCCCccc-ccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCc-----------------CCCCC-
Q 039954 381 LETIRIFNCGNLKTL-PSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILD-----------------CKRLE- 441 (578)
Q Consensus 381 L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------------~~~~~- 441 (578)
|+.+++.+ .++.+ +.+|.++++|+++++.++......+..+..+.++..+.... |..++
T Consensus 103 L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 103 LEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp CCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 88888877 34444 45677788888888877655443344555555565554433 11110
Q ss_pred --------ccccc----------------------------cCCCCCccEEEecC-CcCCcccCCCCCCCcceeeccccc
Q 039954 442 --------ALPKG----------------------------LHNLTSLQELTIGG-ELPSLEEDGLPTNLHSMIERGRGF 484 (578)
Q Consensus 442 --------~~~~~----------------------------~~~l~~L~~L~l~~-~l~~l~~~~~~~~l~~l~~~~~~~ 484 (578)
.++.. ...+++|+++++++ ++..++. ..|
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~--------------~aF 246 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD--------------FTF 246 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT--------------TTT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH--------------hhh
Confidence 00000 00256677777776 5655553 367
Q ss_pred cCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCcccc-EEEeccCCCcccccc-ccCCCCCcceEEeccCCCCccc
Q 039954 485 HRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLT-SLMINNFPNLERLSS-SIVDLQNLTILQLYNCPKLKYF 562 (578)
Q Consensus 485 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l 562 (578)
.+|++|+++++.+ ++..++...| ..+++|+ .+++.+ +++.|+. +|.++++|+++++.+ ++++.+
T Consensus 247 ~~~~~L~~l~l~~---ni~~I~~~aF--------~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I 312 (329)
T 3sb4_A 247 AQKKYLLKIKLPH---NLKTIGQRVF--------SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTL 312 (329)
T ss_dssp TTCTTCCEEECCT---TCCEECTTTT--------TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEE
T ss_pred hCCCCCCEEECCc---ccceehHHHh--------hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCcc
Confidence 8899999999987 3788887664 6778899 999998 7888876 899999999999987 799999
Q ss_pred CCCCCC--CcccceEe
Q 039954 563 PEKGLP--SSLLELDI 576 (578)
Q Consensus 563 ~~~~~~--~sL~~l~l 576 (578)
+...+. ++|+.++.
T Consensus 313 ~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 313 GDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTTTCTTCCCCEEEC
T ss_pred chhhhcCCcchhhhcc
Confidence 887764 37887763
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=4.2e-12 Score=113.24 Aligned_cols=125 Identities=21% Similarity=0.232 Sum_probs=100.4
Q ss_pred CccccccccEEeeeccCCCCCCCCCcCchhhhcccCcccEEEecCCCCCccCCcccccccccEEeccCCCcccccccccC
Q 039954 54 DLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLLKLQRLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTLPESVNK 133 (578)
Q Consensus 54 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~ 133 (578)
.+..+++|++|.+.+. .+ ..+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+..
T Consensus 43 ~~~~l~~L~~L~ls~n------~l-~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN------NI-EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEE------EE-SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCC------CC-cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 5778899999966543 22 3355 777999999999999999999988888999999999999999987 6889
Q ss_pred cCCccEEecCCCchhHHhh--HHHhccccCcccccCCCCcccccCCC----------CCCccccccc
Q 039954 134 LYNLHSLLLEDCWELEKLC--ADMGNLAKLHHLKNSNTKSLEEMPVG----------IGRLTCLQTL 188 (578)
Q Consensus 134 l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~lp~~----------i~~l~~L~~L 188 (578)
+++|++|++++|.. ..++ ..+..+++|++|++++|.+....|.. +..+++|+.|
T Consensus 114 l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 114 LVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp HHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999999999954 4333 46899999999999999854444432 5667777766
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=1.8e-10 Score=99.88 Aligned_cols=95 Identities=22% Similarity=0.283 Sum_probs=74.7
Q ss_pred cCchhhhcccCcccEEEecCCCCCcc-CCcccccccccEEeccCCCccccccc-ccCcCCccEEecCCCchhHHhhHH-H
Q 039954 79 PSILPKLLKLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCWELEKLCAD-M 155 (578)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-l 155 (578)
..+|..+. ++|++|++++|.++.+ |..|..+++|++|+|++|.++.+|.. +.++++|++|++++|. +..+|.. +
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~ 101 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAF 101 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHh
Confidence 55666554 7889999999998877 67788999999999999999888865 4789999999999984 4455554 8
Q ss_pred hccccCcccccCCCCcccccCC
Q 039954 156 GNLAKLHHLKNSNTKSLEEMPV 177 (578)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~ 177 (578)
..+++|++|++++|. ....+.
T Consensus 102 ~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp TTCTTCSEEECCSSC-BCTTBG
T ss_pred ccccCCCEEEeCCCC-cccccc
Confidence 889999999999988 444443
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.98 E-value=8.5e-10 Score=96.26 Aligned_cols=83 Identities=25% Similarity=0.356 Sum_probs=38.7
Q ss_pred ccCcccEEEecCCCCCccC-CcccccccccEEeccCCCccccccc-ccCcCCccEEecCCCchhHHhhHH-HhccccCcc
Q 039954 87 KLQRLRVFSLRGYRIPELP-DSVGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCWELEKLCAD-MGNLAKLHH 163 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~ 163 (578)
.+++|++|++++|.++.+| ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..+|.. +..+++|++
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQK 128 (177)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCE
T ss_pred CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCE
Confidence 4555555555555554443 2234455555555555555444432 34455555555555422 223322 344455555
Q ss_pred cccCCCC
Q 039954 164 LKNSNTK 170 (578)
Q Consensus 164 L~l~~~~ 170 (578)
|++++|.
T Consensus 129 L~l~~N~ 135 (177)
T 2o6r_A 129 IWLHTNP 135 (177)
T ss_dssp EECCSSC
T ss_pred EEecCCC
Confidence 5555544
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=9.9e-10 Score=94.93 Aligned_cols=89 Identities=26% Similarity=0.338 Sum_probs=66.8
Q ss_pred cCchhhhcccCcccEEEecCCCCCcc-CCcccccccccEEeccCCCccccccc-ccCcCCccEEecCCCchhHHhhH-HH
Q 039954 79 PSILPKLLKLQRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCWELEKLCA-DM 155 (578)
Q Consensus 79 ~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~l 155 (578)
..+|..+. +.|++|++++|.++.+ |..|..+++|++|+|++|.++.+|.. +..+++|++|++++|.+ ..+|. .+
T Consensus 22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~ 98 (170)
T 3g39_A 22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAF 98 (170)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTT
T ss_pred CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc-CEeCHHHh
Confidence 44555543 6788888888888777 66788888888888888888888754 47888888888888844 44444 47
Q ss_pred hccccCcccccCCCC
Q 039954 156 GNLAKLHHLKNSNTK 170 (578)
Q Consensus 156 ~~l~~L~~L~l~~~~ 170 (578)
..+++|+.|++++|.
T Consensus 99 ~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 99 DNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCCCCCEEEeCCCC
Confidence 788888888888887
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.94 E-value=5e-08 Score=96.88 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=24.5
Q ss_pred CCCCCCcceEEeccCCCccccCC-CCcCCCCccEEEeCcCCCCCcc-ccccCCCCCccEEEecC
Q 039954 399 LHNLGQLQEIRIQKCRNLESFPE-GGLPCAKLTRLTILDCKRLEAL-PKGLHNLTSLQELTIGG 460 (578)
Q Consensus 399 ~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~ 460 (578)
+..+.+|+++.+.++ ++.++. .+..|.+|+.+++.+. ++.+ ...|.+|.+|+.+++..
T Consensus 293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT
T ss_pred ccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc
Confidence 344445555554331 222322 3334455555555321 2222 23445555555555443
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=1.2e-09 Score=94.80 Aligned_cols=96 Identities=21% Similarity=0.365 Sum_probs=82.1
Q ss_pred ccEEEecCCCCCccCCcccccccccEEeccCCCcccc-cccccCcCCccEEecCCCchhHHhhHH-HhccccCcccccCC
Q 039954 91 LRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCWELEKLCAD-MGNLAKLHHLKNSN 168 (578)
Q Consensus 91 Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~ 168 (578)
-+.++++++.++.+|..+. .+|++|++++|.++.+ |..+.++++|++|++++|. +..+|.. ++.+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence 3789999999999998775 8999999999999988 5678999999999999994 5556654 68999999999999
Q ss_pred CCcccccCCC-CCCcccccccCc
Q 039954 169 TKSLEEMPVG-IGRLTCLQTLCN 190 (578)
Q Consensus 169 ~~~~~~lp~~-i~~l~~L~~L~~ 190 (578)
|. ++.+|.. +..+++|+.|..
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEEC
T ss_pred Cc-cceeCHHHhccccCCCEEEe
Confidence 99 5667665 889999998843
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=1.3e-09 Score=94.17 Aligned_cols=97 Identities=21% Similarity=0.290 Sum_probs=81.9
Q ss_pred cccEEEecCCCCCccCCcccccccccEEeccCCCcccc-cccccCcCCccEEecCCCchhHHhhH-HHhccccCcccccC
Q 039954 90 RLRVFSLRGYRIPELPDSVGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCWELEKLCA-DMGNLAKLHHLKNS 167 (578)
Q Consensus 90 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~ 167 (578)
..++++++++.++.+|..+. .+|++|++++|.++.+ |..+.++++|++|++++|.+ ..+|. .+..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECC
Confidence 35789999999999998774 8999999999999988 56789999999999999954 45554 46899999999999
Q ss_pred CCCcccccCC-CCCCcccccccCc
Q 039954 168 NTKSLEEMPV-GIGRLTCLQTLCN 190 (578)
Q Consensus 168 ~~~~~~~lp~-~i~~l~~L~~L~~ 190 (578)
+|. ++.+|. .+..+++|+.|..
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEe
Confidence 999 556665 4889999998843
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.80 E-value=2.4e-07 Score=91.65 Aligned_cols=172 Identities=11% Similarity=0.183 Sum_probs=106.1
Q ss_pred hcCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCC-CCcCCCCccEEEeCcCCCCCcccc-ccCCCC
Q 039954 374 RLDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPE-GGLPCAKLTRLTILDCKRLEALPK-GLHNLT 451 (578)
Q Consensus 374 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~ 451 (578)
.|.+|++|+.+++.+| .++.++...-...+|+++.+.++ +..++. .+..|++|+.+++.++ ++.++. .|.+ .
T Consensus 175 aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~ 248 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-S 248 (401)
T ss_dssp TTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-C
T ss_pred HhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-C
Confidence 4555666666666554 23333322222456666666532 333332 4445666666666542 333322 3333 5
Q ss_pred CccEEEecCCcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCC---CccccCCCCCCCCCCCCCCCCccccEEE
Q 039954 452 SLQELTIGGELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDD---DMVSFPPKADDKGSGTALPLPASLTSLM 528 (578)
Q Consensus 452 ~L~~L~l~~~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 528 (578)
+|+.+.+.+.+..++ ..+|.+|++|+.+++.+... ....++... +..+++|+.+.
T Consensus 249 ~L~~i~lp~~i~~I~--------------~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a--------F~~c~~L~~l~ 306 (401)
T 4fdw_A 249 GITTVKLPNGVTNIA--------------SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC--------LEGCPKLARFE 306 (401)
T ss_dssp CCSEEEEETTCCEEC--------------TTTTTTCTTCCEEEEESSCCCCCTTCEECTTT--------TTTCTTCCEEC
T ss_pred CccEEEeCCCccEEC--------------hhHhhCCCCCCEEEeCCccccCCcccEECHHH--------hhCCccCCeEE
Confidence 566666654443333 35788999999999988211 112466554 36778999999
Q ss_pred eccCCCcccccc-ccCCCCCcceEEeccCCCCcccCCCCCCC-cccceEec
Q 039954 529 INNFPNLERLSS-SIVDLQNLTILQLYNCPKLKYFPEKGLPS-SLLELDIN 577 (578)
Q Consensus 529 l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~-sL~~l~l~ 577 (578)
+.+ +++.|+. ++.++++|+.+.+.. +++.+....+.. +|+.+.+.
T Consensus 307 l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~ 353 (401)
T 4fdw_A 307 IPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVE 353 (401)
T ss_dssp CCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEEC
T ss_pred eCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEc
Confidence 985 6888877 899999999999954 688888766543 78888775
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=2.1e-08 Score=97.88 Aligned_cols=91 Identities=20% Similarity=0.143 Sum_probs=59.8
Q ss_pred CcCchhhhcccCcccEEEecC-CCCCccC-CcccccccccEEeccCCCccccc-ccccCcCCccEEecCCCchhHHhhHH
Q 039954 78 APSILPKLLKLQRLRVFSLRG-YRIPELP-DSVGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCAD 154 (578)
Q Consensus 78 ~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~ 154 (578)
...+|. +..+++|++|+|++ |.++.+| ..|..+++|++|+|++|.++.+| ..+.++++|++|+|++|. +..+|..
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~ 98 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWK 98 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCST
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHH
Confidence 345666 66777777777775 7777664 56777777777777777777665 356777777777777773 3444443
Q ss_pred HhccccCcccccCCCC
Q 039954 155 MGNLAKLHHLKNSNTK 170 (578)
Q Consensus 155 l~~l~~L~~L~l~~~~ 170 (578)
+.....|+.|++.+|.
T Consensus 99 ~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTCSCCCCEEECCSSC
T ss_pred HcccCCceEEEeeCCC
Confidence 3332337777777776
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=5.2e-08 Score=95.03 Aligned_cols=93 Identities=17% Similarity=0.131 Sum_probs=58.6
Q ss_pred EEecCC-CCCccCCcccccccccEEeccC-CCccccc-ccccCcCCccEEecCCCchhHHhhHHHhccccCcccccCCCC
Q 039954 94 FSLRGY-RIPELPDSVGDLRYLRYLNLSG-TEIRTLP-ESVNKLYNLHSLLLEDCWELEKLCADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 94 L~L~~~-~i~~lp~~i~~l~~L~~L~L~~-~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 170 (578)
++.+++ .++.+|. +..+.+|++|+|++ |.++.+| ..+.++++|++|+|++|.+....|..|+.+++|+.|++++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 466666 6667776 77777777777774 6676665 456677777777777774444444456777777777777776
Q ss_pred cccccCCC-CCCcccccccC
Q 039954 171 SLEEMPVG-IGRLTCLQTLC 189 (578)
Q Consensus 171 ~~~~lp~~-i~~l~~L~~L~ 189 (578)
+..+|.. +..++ |+.|.
T Consensus 92 -l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 92 -LESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp -CSCCCSTTTCSCC-CCEEE
T ss_pred -cceeCHHHcccCC-ceEEE
Confidence 4455544 33333 55553
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.45 E-value=1e-05 Score=80.20 Aligned_cols=104 Identities=15% Similarity=0.306 Sum_probs=52.6
Q ss_pred cCCCCCccEEEeecCCCCcccccCCCCCCCcceEEeccCCCccccCC-CCcCCCCccEEEeCcCCCCCcc-ccccCCCCC
Q 039954 375 LDNNTSLETIRIFNCGNLKTLPSGLHNLGQLQEIRIQKCRNLESFPE-GGLPCAKLTRLTILDCKRLEAL-PKGLHNLTS 452 (578)
Q Consensus 375 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~ 452 (578)
+.++.+|+.+.+.+. ....-...+.++++|+.+.+.. .+..++. .+..|.+|+.+.+.++ ++.+ ...|.+|.+
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCC
Confidence 445555666655442 1222234455566666666642 2333332 3445666666666432 3333 234566666
Q ss_pred ccEEEecCCcCCcccCCCCCCCcceeeccccccCCCcccEEEEee
Q 039954 453 LQELTIGGELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIIN 497 (578)
Q Consensus 453 L~~L~l~~~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~ 497 (578)
|+++.+..+++.+.. .+|.+|.+|+.+++.+
T Consensus 336 L~~i~ip~sv~~I~~--------------~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 336 LERIAIPSSVTKIPE--------------SAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEEECTTCCBCCG--------------GGGTTCTTCCEEEESS
T ss_pred CCEEEECcccCEEhH--------------hHhhCCCCCCEEEECC
Confidence 666666544433332 2456666666666655
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.35 E-value=4.6e-05 Score=75.37 Aligned_cols=261 Identities=15% Similarity=0.147 Sum_probs=135.6
Q ss_pred ceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcC--CceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCc
Q 039954 250 NLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMS--RVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQG 326 (578)
Q Consensus 250 ~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 326 (578)
.|+.+.+... ++..-. ++..+.+|+.+.+..+. .++.++...+. .+.+|+.+.+-.. +...... .
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~-----~c~~L~~i~~~~~--~~~I~~~----a 132 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFM-----FCSELTDIPILDS--VTEIDSE----A 132 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTT-----TCTTCCBCGGGTT--CSEECTT----T
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhch-----hcccceeeccCCc--cceehhh----h
Confidence 4888888654 222222 67889999999887652 35555443322 2566666554321 1111111 1
Q ss_pred cccCcccceeeccccc-ccccCCCCCCCCCcceEEEEecCCchhhHHHhcCCCCCccEEEeecCCCCcccccCCCCCCCc
Q 039954 327 VERFPKLRELHILRCS-KLQGTFPEHLPALEKLSLYVYGCSKLESIAERLDNNTSLETIRIFNCGNLKTLPSGLHNLGQL 405 (578)
Q Consensus 327 ~~~~~~L~~L~l~~~~-~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 405 (578)
+..+.+|+.+.+.... .+..........|+.+.+ . ..+..+........+|+.+.+... ........+..+.++
T Consensus 133 F~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~--~--~~~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l 207 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTL--P--DSVTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFAL 207 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEC--C--TTCCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTC
T ss_pred hhhhcccccccccceeeeecccceecccccccccc--c--ceeeEeccccccccceeEEEECCc-ccccccchhhhcccc
Confidence 5677888888886531 111111122223333221 1 112222222223356778777653 222224455666666
Q ss_pred ceEEeccCCCcc----------------------------ccC--------CCCcCCCCccEEEeCcCCCCCccccccCC
Q 039954 406 QEIRIQKCRNLE----------------------------SFP--------EGGLPCAKLTRLTILDCKRLEALPKGLHN 449 (578)
Q Consensus 406 ~~L~l~~~~~~~----------------------------~~~--------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 449 (578)
+........... .+| ..+..+..|+.+.+.+.- ...-...|.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~ 286 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMN 286 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTT
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCccccc
Confidence 666554321110 000 012223334443332211 1111123344
Q ss_pred CCCccEEEecCCcCCcccCCCCCCCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEe
Q 039954 450 LTSLQELTIGGELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMI 529 (578)
Q Consensus 450 l~~L~~L~l~~~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 529 (578)
+++|+.+.+...+..+ ....|.+|.+|+.+++.+ .++.|....| ..+.+|+.+.|
T Consensus 287 c~~L~~i~l~~~i~~I--------------~~~aF~~c~~L~~i~lp~---~v~~I~~~aF--------~~C~~L~~i~i 341 (394)
T 4gt6_A 287 CPALQDIEFSSRITEL--------------PESVFAGCISLKSIDIPE---GITQILDDAF--------AGCEQLERIAI 341 (394)
T ss_dssp CTTCCEEECCTTCCEE--------------CTTTTTTCTTCCEEECCT---TCCEECTTTT--------TTCTTCCEEEE
T ss_pred ccccccccCCCccccc--------------CceeecCCCCcCEEEeCC---cccEehHhHh--------hCCCCCCEEEE
Confidence 4444444443322222 345788889999998865 4677776553 56788999999
Q ss_pred ccCCCcccccc-ccCCCCCcceEEecc
Q 039954 530 NNFPNLERLSS-SIVDLQNLTILQLYN 555 (578)
Q Consensus 530 ~~~~~l~~i~~-~~~~l~~L~~L~l~~ 555 (578)
.. .++.|.. ++.++++|+.+++.+
T Consensus 342 p~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 342 PS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred Cc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 75 5788876 888999999999876
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.28 E-value=1e-07 Score=93.28 Aligned_cols=131 Identities=19% Similarity=0.132 Sum_probs=72.2
Q ss_pred CCeeEEEeeeCCCCccccccCccc-----cccccEEeeeccCCCCCCCCCcCchhhhc-ccCcccEEEecCCCCCcc-CC
Q 039954 34 ENLRHLSYIRGDYDGVQRFGDLYD-----IQHLRTFLPVMLSNSEPGYLAPSILPKLL-KLQRLRVFSLRGYRIPEL-PD 106 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~-----~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~l-p~ 106 (578)
..++.+.+..+.+.... ...+.. .+.|+.|.+. + |.+.......+. .+++|+.|+|++|.++.. ..
T Consensus 72 ~~L~~L~Ls~n~l~~~~-~~~l~~~L~~~~~~L~~L~Ls---~---n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVK-CTVVAAVLGSGRHALDEVNLA---S---CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp TTCCEEECTTSCCCHHH-HHHHHHHHSSCSSCEEEEECT---T---CCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred hhCCEEEecCCCCCHHH-HHHHHHHHhhCCCCceEEEec---C---CCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence 44566666655544311 112211 2466666433 2 333343344444 566777777777776532 12
Q ss_pred cc-----cccccccEEeccCCCccc-----ccccccCcCCccEEecCCCchhH----HhhHHHhccccCcccccCCCCc
Q 039954 107 SV-----GDLRYLRYLNLSGTEIRT-----LPESVNKLYNLHSLLLEDCWELE----KLCADMGNLAKLHHLKNSNTKS 171 (578)
Q Consensus 107 ~i-----~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~ 171 (578)
.+ ....+|++|+|++|.++. ++..+..+++|++|++++|.+.. .++..+...++|+.|++++|.+
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 22 234667777777777653 34445667777777777775432 2344556666777777777763
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.27 E-value=3.9e-07 Score=89.14 Aligned_cols=134 Identities=13% Similarity=0.050 Sum_probs=96.4
Q ss_pred CCeeEEEeeeCCCCccccccCccccccccEEeeeccCCCCCCCCCcCchhhhc-----ccCcccEEEecCCCCCc-----
Q 039954 34 ENLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLSNSEPGYLAPSILPKLL-----KLQRLRVFSLRGYRIPE----- 103 (578)
Q Consensus 34 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-----~l~~Lr~L~L~~~~i~~----- 103 (578)
..++.+.+..+.+.......-...+++|+.|.+. + |.+...-...+. ..+.|++|+|++|.++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls---~---n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 174 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQ---L---NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAV 174 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECC---S---SCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcC---C---CCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHH
Confidence 5788888888776542221222346678888554 3 344443334432 45889999999999854
Q ss_pred cCCcccccccccEEeccCCCccc-----ccccccCcCCccEEecCCCchhH----HhhHHHhccccCcccccCCCCccc
Q 039954 104 LPDSVGDLRYLRYLNLSGTEIRT-----LPESVNKLYNLHSLLLEDCWELE----KLCADMGNLAKLHHLKNSNTKSLE 173 (578)
Q Consensus 104 lp~~i~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~~~ 173 (578)
++..+..+++|++|+|++|.++. ++..+...++|++|++++|.+.. .++..+...++|++|++++|.+..
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 45566789999999999999863 45667788999999999996543 355556778999999999998443
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=5.3e-07 Score=87.45 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=56.1
Q ss_pred hhhhcccCcccEEEecCCCCC----------ccCCcccccccccEEeccCCCcccccccccCcCCccEEecCCCchhHHh
Q 039954 82 LPKLLKLQRLRVFSLRGYRIP----------ELPDSVGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCWELEKL 151 (578)
Q Consensus 82 ~~~~~~l~~Lr~L~L~~~~i~----------~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l 151 (578)
..++.++++|+.|.+...... .++..+..+++|+.|+++++.-..++. + .+++|++|++..|......
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHH
Confidence 344557889999998765331 233344677889999998874223444 3 3788999999887554444
Q ss_pred hHHHh--ccccCcccccCC
Q 039954 152 CADMG--NLAKLHHLKNSN 168 (578)
Q Consensus 152 p~~l~--~l~~L~~L~l~~ 168 (578)
...++ .+++|++|+++.
T Consensus 210 l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHHHHSBCTTCCEEEEEC
T ss_pred HHHHHHccCCCCcEEEEec
Confidence 44454 678888888753
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=2.1e-06 Score=83.29 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=69.5
Q ss_pred ccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhHHHhc--CCCCCccEEEeecCC-------CCcccccC
Q 039954 328 ERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESIAERL--DNNTSLETIRIFNCG-------NLKTLPSG 398 (578)
Q Consensus 328 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i~~~~--~~l~~L~~L~l~~~~-------~~~~~~~~ 398 (578)
..+|+|+.|.+++|..+. ..+...++|+.|.+.. |..-......+ ..+++|+.|+|+.+. .+..+...
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~--~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIIS--GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEEC--SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCce-eccccCCCCcEEEEec--CCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 445666666666552222 1112245566655432 22111111122 367888888886321 11122112
Q ss_pred C--CCCCCcceEEeccCCCccccCCC---CcCCCCccEEEeCcCCCCC----ccccccCCCCCccEEEecC
Q 039954 399 L--HNLGQLQEIRIQKCRNLESFPEG---GLPCAKLTRLTILDCKRLE----ALPKGLHNLTSLQELTIGG 460 (578)
Q Consensus 399 ~--~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~ 460 (578)
+ ..+|+|++|.+.+|......+.. ...+++|+.|+|+.|.... .++..+.++++|+.|++++
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 2 25788888888887665322111 1247888888888776433 2344445678888888876
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=1.9e-06 Score=73.12 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=45.2
Q ss_pred ccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCC----CccccEEEeccCCCcccccc-ccCCCCCcceEEeccCCC
Q 039954 484 FHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPL----PASLTSLMINNFPNLERLSS-SIVDLQNLTILQLYNCPK 558 (578)
Q Consensus 484 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c~~ 558 (578)
+.++++|++|++++ |..+++-.-.. +.. .++|++|+|++|++++.-.- .+..+++|+.|++++|++
T Consensus 81 L~~~~~L~~L~L~~-C~~ItD~gL~~--------L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 81 MEGLQYVEKIRLCK-CHYIEDGCLER--------LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp GTTCSCCCEEEEES-CTTCCHHHHHH--------HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTT
T ss_pred hcCCCCCCEEEeCC-CCccCHHHHHH--------HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCC
Confidence 34567777777777 44443311100 011 24788999999888885332 456788999999999988
Q ss_pred Ccc
Q 039954 559 LKY 561 (578)
Q Consensus 559 l~~ 561 (578)
++.
T Consensus 152 Itd 154 (176)
T 3e4g_A 152 VKE 154 (176)
T ss_dssp CCC
T ss_pred CCc
Confidence 876
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=0.00035 Score=68.59 Aligned_cols=139 Identities=14% Similarity=0.167 Sum_probs=85.9
Q ss_pred cCCCCCCCcceEEeccCCCccccC-CCCcCCCCccEEEeCcCCCCCcc-ccccCCCCCccEEEecCCcCCcccCCCCCCC
Q 039954 397 SGLHNLGQLQEIRIQKCRNLESFP-EGGLPCAKLTRLTILDCKRLEAL-PKGLHNLTSLQELTIGGELPSLEEDGLPTNL 474 (578)
Q Consensus 397 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~l~~l~~~~~~~~l 474 (578)
..+....+|+.+.+... +..+. ..+..+..|+.+.+..+ ++.+ ...+.++.+|+.+.+...+..++
T Consensus 211 ~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~i~~i~-------- 278 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAKVKTVP-------- 278 (379)
T ss_dssp TTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCCCSEEC--------
T ss_pred cccccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccccceecc--------
Confidence 34445566666666432 22232 23445667777766543 3333 23456677777777765444333
Q ss_pred cceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCcccccc-ccCCCCCcceEEe
Q 039954 475 HSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSS-SIVDLQNLTILQL 553 (578)
Q Consensus 475 ~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l 553 (578)
...|.+|++|+.+.+.+ ..++.+....| ....+|+.+.|.+ .++.|.. ++.++++|+++.+
T Consensus 279 ------~~aF~~c~~L~~i~l~~--~~i~~I~~~aF--------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 279 ------YLLCSGCSNLTKVVMDN--SAIETLEPRVF--------MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ------TTTTTTCTTCCEEEECC--TTCCEECTTTT--------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred ------ccccccccccccccccc--cccceehhhhh--------cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 23577888888888876 45667776553 5667888888865 5777766 7888888888888
Q ss_pred ccCCCCcccCCCCC
Q 039954 554 YNCPKLKYFPEKGL 567 (578)
Q Consensus 554 ~~c~~l~~l~~~~~ 567 (578)
.. +++.+....+
T Consensus 341 p~--~v~~I~~~aF 352 (379)
T 4h09_A 341 PK--SITLIESGAF 352 (379)
T ss_dssp CT--TCCEECTTTT
T ss_pred CC--ccCEEchhHh
Confidence 53 5666655444
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.05 E-value=0.00057 Score=67.10 Aligned_cols=278 Identities=13% Similarity=0.114 Sum_probs=150.6
Q ss_pred CCceeEEEeccCCCCCCCC-CCCCCCCcceeeecCcCCceecCccccCCCCCCCCCCCCeeeeccCCCccccccCCCCCc
Q 039954 248 FSNLVTLKFKNCDMCTALP-SVGQLPSLTHLAVCGMSRVKRLGSEFYGNDAPIPFPCLETLHFEDMQGWEDWIPHGSSQG 326 (578)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 326 (578)
..+|+.+.+... ++..-. .+..+.+|+.+.+..+ ++.++...+.. + +|+++.+-. .+.......
T Consensus 45 ~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~-----c-~l~~i~~~~--~l~~I~~~a---- 109 (379)
T 4h09_A 45 RDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFAD-----T-KLQSYTGME--RVKKFGDYV---- 109 (379)
T ss_dssp GGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTT-----C-CCCEEEECT--TCCEECTTT----
T ss_pred ccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcC-----C-CCceEECCc--eeeEeccce----
Confidence 456777777542 221112 6778888888888543 45554443322 2 455554432 122111111
Q ss_pred cccCcccceeecccccccccCCCCCCCCCcceEEEEecCCchhhH-HHhcCCCCCccEEEeecCCCCcc-----------
Q 039954 327 VERFPKLRELHILRCSKLQGTFPEHLPALEKLSLYVYGCSKLESI-AERLDNNTSLETIRIFNCGNLKT----------- 394 (578)
Q Consensus 327 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~l~~~~~~~l~~i-~~~~~~l~~L~~L~l~~~~~~~~----------- 394 (578)
+.. .+|+.+.+... +...-...+.+.....+... ..+..+ ...+..+.+++...+........
T Consensus 110 F~~-~~L~~i~lp~~--~~~i~~~~F~~~~l~~~~~~--~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (379)
T 4h09_A 110 FQG-TDLDDFEFPGA--TTEIGNYIFYNSSVKRIVIP--KSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNK 184 (379)
T ss_dssp TTT-CCCSEEECCTT--CCEECTTTTTTCCCCEEEEC--TTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTS
T ss_pred ecc-CCcccccCCCc--cccccccccccceeeeeecc--ceeeccccchhcccccccccccccccceeecccceeccccc
Confidence 222 36777777653 22111111222111111111 111111 11345566777766654322111
Q ss_pred -cccCCCCCCCcceEEeccCCCccccCCCCcCCCCccEEEeCcCCCCCcc-ccccCCCCCccEEEecCCcCCcccCCCCC
Q 039954 395 -LPSGLHNLGQLQEIRIQKCRNLESFPEGGLPCAKLTRLTILDCKRLEAL-PKGLHNLTSLQELTIGGELPSLEEDGLPT 472 (578)
Q Consensus 395 -~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~l~~l~~~~~~~ 472 (578)
....+.....+..+.+... ........+..+.+|+.+.+... +..+ ...+.++.+|+.+.+...+..+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~v~~I~~----- 256 (379)
T 4h09_A 185 TILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKNVTSIGS----- 256 (379)
T ss_dssp SEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTTCCEECT-----
T ss_pred ceeccccccccccccccccc-eeEEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCCccEeCc-----
Confidence 1112223344444444331 11122223445677777777543 2322 345677888888888764444432
Q ss_pred CCcceeeccccccCCCcccEEEEeecCCCccccCCCCCCCCCCCCCCCCccccEEEeccCCCcccccc-ccCCCCCcceE
Q 039954 473 NLHSMIERGRGFHRFSSLRQLAIINCDDDMVSFPPKADDKGSGTALPLPASLTSLMINNFPNLERLSS-SIVDLQNLTIL 551 (578)
Q Consensus 473 ~l~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L 551 (578)
..+.++.+|+.+.+.. .+..++...+ ...++|+.+.+.+ ..++.|+. ++.++.+|+.+
T Consensus 257 ---------~aF~~~~~l~~i~l~~---~i~~i~~~aF--------~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 257 ---------FLLQNCTALKTLNFYA---KVKTVPYLLC--------SGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp ---------TTTTTCTTCCEEEECC---CCSEECTTTT--------TTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEE
T ss_pred ---------cccceeehhccccccc---cceecccccc--------ccccccccccccc-cccceehhhhhcCCCCCCEE
Confidence 3678889999999965 5677776553 5778999999987 47888877 88999999999
Q ss_pred EeccCCCCcccCCCCCC--CcccceEe
Q 039954 552 QLYNCPKLKYFPEKGLP--SSLLELDI 576 (578)
Q Consensus 552 ~l~~c~~l~~l~~~~~~--~sL~~l~l 576 (578)
.+.. +++.|....+. .+|+.+.+
T Consensus 316 ~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 316 TLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred EcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 9963 57777666553 36666654
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.04 E-value=4.5e-06 Score=76.58 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=52.2
Q ss_pred ccCcccEEEecCCCCCcc---CCcccccccccEEeccCCCcccccccccCcC--CccEEecCCCchhHHhh-------HH
Q 039954 87 KLQRLRVFSLRGYRIPEL---PDSVGDLRYLRYLNLSGTEIRTLPESVNKLY--NLHSLLLEDCWELEKLC-------AD 154 (578)
Q Consensus 87 ~l~~Lr~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~--~L~~L~l~~~~~~~~lp-------~~ 154 (578)
++++|+.|+|++|.++.+ |..+..+++|++|+|++|.+..+ ..+..++ +|++|++++|.....+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 577788888888877654 34556778888888888877766 2344444 77888887775543332 23
Q ss_pred HhccccCccccc
Q 039954 155 MGNLAKLHHLKN 166 (578)
Q Consensus 155 l~~l~~L~~L~l 166 (578)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 567777777763
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=4.2e-06 Score=70.96 Aligned_cols=85 Identities=15% Similarity=0.226 Sum_probs=62.5
Q ss_pred CcccEEEecCCCCCcc-CCcccccccccEEeccCCC-cccc-cccccCc----CCccEEecCCCchh-HHhhHHHhcccc
Q 039954 89 QRLRVFSLRGYRIPEL-PDSVGDLRYLRYLNLSGTE-IRTL-PESVNKL----YNLHSLLLEDCWEL-EKLCADMGNLAK 160 (578)
Q Consensus 89 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~-i~~l-p~~~~~l----~~L~~L~l~~~~~~-~~lp~~l~~l~~ 160 (578)
..|+.||++++.|+.. -..+..+++|++|+|++|. |++- -..+..+ ++|++|++++|..+ ..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4689999999988643 3556889999999999986 6532 1445553 47999999998633 333355788999
Q ss_pred CcccccCCCCccc
Q 039954 161 LHHLKNSNTKSLE 173 (578)
Q Consensus 161 L~~L~l~~~~~~~ 173 (578)
|++|++++|..++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999987444
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=1.5e-05 Score=69.50 Aligned_cols=112 Identities=15% Similarity=0.069 Sum_probs=70.2
Q ss_pred CccccccccEEeeeccCCCCCCCCCcC----chhhhcccCcccEEEecCCCCCc-----cCCcccccccccEEeccCCCc
Q 039954 54 DLYDIQHLRTFLPVMLSNSEPGYLAPS----ILPKLLKLQRLRVFSLRGYRIPE-----LPDSVGDLRYLRYLNLSGTEI 124 (578)
Q Consensus 54 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~i 124 (578)
.+...+.|++|.+.+.. .+... +...+...+.|++|+|++|.++. +...+...+.|++|+|++|.|
T Consensus 31 ~l~~~~~L~~L~L~~n~-----~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIM-----NIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHTTCTTCCEEECTTCT-----TCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHhcCCCCCEEEecCCC-----CCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 34456777777553320 22222 23334456778888888888753 344455667788888888877
Q ss_pred cc-----ccccccCcCCccEEec--CCCchhHH----hhHHHhccccCcccccCCCC
Q 039954 125 RT-----LPESVNKLYNLHSLLL--EDCWELEK----LCADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 125 ~~-----lp~~~~~l~~L~~L~l--~~~~~~~~----lp~~l~~l~~L~~L~l~~~~ 170 (578)
+. +...+...+.|++|++ ++|.+... +...+...+.|++|++++|.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 63 4556677778888888 66644332 44445566778888888776
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.71 E-value=7.2e-06 Score=71.49 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=78.0
Q ss_pred hhhcccCcccEEEecCC-CCCc-----cCCcccccccccEEeccCCCccc-----ccccccCcCCccEEecCCCchhHH-
Q 039954 83 PKLLKLQRLRVFSLRGY-RIPE-----LPDSVGDLRYLRYLNLSGTEIRT-----LPESVNKLYNLHSLLLEDCWELEK- 150 (578)
Q Consensus 83 ~~~~~l~~Lr~L~L~~~-~i~~-----lp~~i~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~- 150 (578)
..+...+.|++|+|++| .++. +...+...++|++|+|++|.++. +...+...++|++|++++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34447899999999999 8853 44566778999999999999863 455667778999999999965443
Q ss_pred ---hhHHHhccccCccccc--CCCCcccc----cCCCCCCccccccc
Q 039954 151 ---LCADMGNLAKLHHLKN--SNTKSLEE----MPVGIGRLTCLQTL 188 (578)
Q Consensus 151 ---lp~~l~~l~~L~~L~l--~~~~~~~~----lp~~i~~l~~L~~L 188 (578)
+...+...+.|++|++ ++|.+... +...+...+.|+.|
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L 156 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF 156 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEE
Confidence 5556777889999999 77874432 22334444566666
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.58 E-value=4.4e-06 Score=76.63 Aligned_cols=101 Identities=20% Similarity=0.103 Sum_probs=68.4
Q ss_pred ccCcccE--EEecCCCCCccCCc----ccccccccEEeccCCCcccc---cccccCcCCccEEecCCCchhHHhhHHHhc
Q 039954 87 KLQRLRV--FSLRGYRIPELPDS----VGDLRYLRYLNLSGTEIRTL---PESVNKLYNLHSLLLEDCWELEKLCADMGN 157 (578)
Q Consensus 87 ~l~~Lr~--L~L~~~~i~~lp~~----i~~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~~l~~ 157 (578)
..+.|+. ++++.|....++.. ...+++|++|+|++|.+..+ |..+..+++|++|+|++|.+ ..+ ..+..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~-~~l~~ 216 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSE-RELDK 216 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSG-GGGGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCc-hhhhh
Confidence 4445554 55566644333322 24688999999999998765 45667899999999999954 333 23455
Q ss_pred cc--cCcccccCCCCcccccCC-------CCCCcccccccC
Q 039954 158 LA--KLHHLKNSNTKSLEEMPV-------GIGRLTCLQTLC 189 (578)
Q Consensus 158 l~--~L~~L~l~~~~~~~~lp~-------~i~~l~~L~~L~ 189 (578)
+. +|++|++++|.+...+|. .+..+++|+.|+
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 55 999999999996655542 255666777663
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.98 E-value=0.01 Score=47.64 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=39.3
Q ss_pred cEEEecCCCCC--ccCCcccccccccEEeccCCCcccccc-cccCcCCccEEecCCCc
Q 039954 92 RVFSLRGYRIP--ELPDSVGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCW 146 (578)
Q Consensus 92 r~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~ 146 (578)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|. .+..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36777777777 7776542 468888888888888874 45778888888888773
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.97 E-value=0.019 Score=49.51 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=45.0
Q ss_pred ccCcccEEEecCC-CCCc-----cCCcccccccccEEeccCCCcc-----cccccccCcCCccEEecCCCchhHH----h
Q 039954 87 KLQRLRVFSLRGY-RIPE-----LPDSVGDLRYLRYLNLSGTEIR-----TLPESVNKLYNLHSLLLEDCWELEK----L 151 (578)
Q Consensus 87 ~l~~Lr~L~L~~~-~i~~-----lp~~i~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~----l 151 (578)
+-+.|+.|+|+++ .|.. +.+.+..-..|+.|+|++|.++ .+...+..-+.|++|+|+.|.+... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456666676664 5532 3344455566777777776664 2334444556677777776644332 2
Q ss_pred hHHHhccccCcccccCCC
Q 039954 152 CADMGNLAKLHHLKNSNT 169 (578)
Q Consensus 152 p~~l~~l~~L~~L~l~~~ 169 (578)
...+..-+.|++|+++++
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 223333345666666654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.76 E-value=0.035 Score=44.53 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=26.3
Q ss_pred CCCccccEEEeccCCCcccccc-ccCCCCCcceEEeccC
Q 039954 519 PLPASLTSLMINNFPNLERLSS-SIVDLQNLTILQLYNC 556 (578)
Q Consensus 519 ~~~~~L~~L~l~~~~~l~~i~~-~~~~l~~L~~L~l~~c 556 (578)
.++++|++|+|++ ++|+.++. .+..+++|+.|+++++
T Consensus 28 ~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 28 AFPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CCCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCC
Confidence 3566777777777 57777766 5667777777777764
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.81 E-value=0.088 Score=45.35 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=74.6
Q ss_pred ccccccEEeeeccCCCCCCCCCc----CchhhhcccCcccEEEecCCCCCc-----cCCcccccccccEEeccCCCcc--
Q 039954 57 DIQHLRTFLPVMLSNSEPGYLAP----SILPKLLKLQRLRVFSLRGYRIPE-----LPDSVGDLRYLRYLNLSGTEIR-- 125 (578)
Q Consensus 57 ~~~~Lr~L~~~~~~~~~~~~~~~----~~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~i~-- 125 (578)
+-+.|+.|.+.+. +.+.+ .+...+..-..|+.|+|++|.|+. +.+.+..-+.|++|+|+.|.|+
T Consensus 39 ~n~~L~~L~L~~n-----n~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 39 DDTDLKEVNINNM-----KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp TCSSCCEEECTTC-----CSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred cCCCccEEECCCC-----CCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 4567777755321 12222 234455566789999999999853 3445567788999999999986
Q ss_pred ---cccccccCcCCccEEecCCCc---hhH----HhhHHHhccccCcccccCCCC
Q 039954 126 ---TLPESVNKLYNLHSLLLEDCW---ELE----KLCADMGNLAKLHHLKNSNTK 170 (578)
Q Consensus 126 ---~lp~~~~~l~~L~~L~l~~~~---~~~----~lp~~l~~l~~L~~L~l~~~~ 170 (578)
.+-+.+..-+.|++|+++++. +-. .+...+..-+.|+.|+++.+.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 344556667789999998652 222 344556667889999998765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.29 E-value=14 Score=27.39 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=24.5
Q ss_pred cccCCCCCccEEEecCCcCCcccCCCCCCCcceeeccccccCCCcccEEEEee
Q 039954 445 KGLHNLTSLQELTIGGELPSLEEDGLPTNLHSMIERGRGFHRFSSLRQLAIIN 497 (578)
Q Consensus 445 ~~~~~l~~L~~L~l~~~l~~l~~~~~~~~l~~l~~~~~~~~~l~~L~~L~l~~ 497 (578)
..|.+|.+|+.+.|-..++.+.. ..|.+|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~v~~Ig~--------------~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNIGLLYD--------------GMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTTSSCCCT--------------TSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCchheEcH--------------HHHhccCCccEEEEcC
Confidence 35666777777777664444432 2566777777777766
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.33 E-value=44 Score=24.69 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=9.8
Q ss_pred ccccCCCcccEEEEee
Q 039954 482 RGFHRFSSLRQLAIIN 497 (578)
Q Consensus 482 ~~~~~l~~L~~L~l~~ 497 (578)
..|.+|.+|+++.+..
T Consensus 14 ~aF~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP 29 (100)
T ss_dssp CTTTTCTTCCCEEECT
T ss_pred HHhcCCCCCcEEEcCC
Confidence 4566666666666644
No 167
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=36.04 E-value=9 Score=39.04 Aligned_cols=18 Identities=6% Similarity=0.159 Sum_probs=16.1
Q ss_pred CcchHHHHHHHhcccceE
Q 039954 1 MHDLISDLAQWAAEEIYF 18 (578)
Q Consensus 1 mHd~v~d~~~~~~~~~~~ 18 (578)
|||+|||+|++++.+++.
T Consensus 456 mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCHHHHHHHHTTSCTHHH
T ss_pred eChHHHHHHHHHHHHHHH
Confidence 899999999999987664
Done!