BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039955
(420 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49675|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic
OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1
Length = 595
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 157/419 (37%), Positives = 216/419 (51%), Gaps = 98/419 (23%)
Query: 13 LKYHSCLKPKKPPLSLPSSSSSQRKT--SLSSSSQRKTSSSSSSAR------TMIVNTIN 64
L+ +S + ++ P++ PS ++ +R +L + + SS R T + T+
Sbjct: 31 LRINSAVVEERSPITNPSDNNDRRNKPKTLHNRTNHTLVSSPPKLRPEMTLATALFTTVE 90
Query: 65 NLFNNLMMRNSNYKLQPSLDPKRALSNNFAPV-DELPPTQCQVIQGSLPSCLDE------ 117
++ N + S +PS+DPK LS+NFAPV DELPPT C++I G+LP L+
Sbjct: 91 DVINTFIDPPS----RPSVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNG 146
Query: 118 ---------PYHLFDGDAMLHCIRISQGQATFCSRCVKTYKYTIENTHELLSLQLVFSQA 168
PYHLFDGD MLH I+I G+AT CSR VKTYKY +E + VFS
Sbjct: 147 PNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNVFSGF 206
Query: 169 NLISIN-------------------NGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNG 209
N ++ + NG GLAN SL+F + LFA+ E DLPYAVRLT +G
Sbjct: 207 NGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESG 266
Query: 210 DTDTKTLGRHDFDVKSGMNMTAHPKKRPCNRRNVCF------------------------ 245
D + T+GR+DFD K M+MTAHPK P F
Sbjct: 267 DIE--TIGRYDFDGKLAMSMTAHPKTDPITGETFAFRYGPVPPFLTYFRFDSAGKKQRDV 324
Query: 246 PLWSNTS---VCDTLLLRCKRLFAAF---------------GS------TKASRIGVIPR 281
P++S TS + D + + +FA GS K R+GVIP+
Sbjct: 325 PIFSMTSPSFLHDFAITKRHAIFAEIQLGMRMNMLDLVLEGGSPVGTDNGKTPRLGVIPK 384
Query: 282 CAKDSLQMRWFDVPGFNNIHAINEWDEEDGN-VIILAPNILSIEQAFGKTELVPCLMEK 339
A D +M+WF+VPGFN IHAIN WDE+DGN V+++APNI+SIE + +LV L+EK
Sbjct: 385 YAGDESEMKWFEVPGFNIIHAINAWDEDDGNSVVLIAPNIMSIEHTLERMDLVHALVEK 443
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 50/65 (76%)
Query: 348 ANTEADEDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREI 407
N EA+ED+GYVV+YVHD TGESKFLV DAKSP L+I A V+ + VP G HGLFV+E
Sbjct: 531 GNPEAEEDDGYVVTYVHDEVTGESKFLVMDAKSPELEIVAAVRLPRRVPYGFHGLFVKES 590
Query: 408 ELRKL 412
+L KL
Sbjct: 591 DLNKL 595
>sp|Q8LP17|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum
GN=CCD1 PE=2 SV=1
Length = 541
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 140/309 (45%), Gaps = 80/309 (25%)
Query: 85 PKRALSNNFAPV-DELPPTQCQVIQGSLPSCLD---------------EPYHLFDGDAML 128
P LS NFAPV DE PP + +QG LP CL+ YH FDGD M+
Sbjct: 44 PHHWLSGNFAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMI 103
Query: 129 HCIRISQGQATFCSRCVKTYKYTIENTHE-----------------LLSLQLVFSQANLI 171
H +RI G+A++ SR VKT ++ E ++++Q++ ++ ++
Sbjct: 104 HGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMKIGDLKGLFGLLMVNMQMLRAKLKIL 163
Query: 172 SINNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFDVKSGMNMTA 231
++ G G AN +L + L A+ EGD PYA+++ +G D +TLG D+D + G N TA
Sbjct: 164 DVSYGHGTANTALVYHHQKLLALSEGDKPYAIKVFEDG--DLQTLGMLDYDKRLGHNFTA 221
Query: 232 HPKKRPCNRRNVC-------------------------------------FPLWSNTSVC 254
HPK P F + N S+
Sbjct: 222 HPKVDPFTGEMFTFGYSHTAPYVTYRVISKDGFMQDPVPITISDPVMMHDFAITENYSIF 281
Query: 255 DTL--------LLRCKRLFAAFGSTKASRIGVIPRCAKDSLQMRWFDVPGFNNIHAINEW 306
L +++ K L +F STK +R GV+PR AKD +RWF++P H N W
Sbjct: 282 MDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDDKHIRWFELPNCFIFHNANAW 341
Query: 307 DEEDGNVII 315
+EED V+I
Sbjct: 342 EEEDEIVLI 350
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 349 NTEADEDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIE 408
T+++ED+GY++ +VHD TG+S V DAK + AVV+ Q VP G H FV E +
Sbjct: 475 GTDSEEDDGYLIFFVHDENTGKSFVHVIDAKRMSAEPVAVVELPQRVPYGFHAFFVTEDQ 534
Query: 409 LRK 411
L++
Sbjct: 535 LQE 537
>sp|Q94IR2|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus
vulgaris GN=CCD1 PE=1 SV=1
Length = 543
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 135/308 (43%), Gaps = 79/308 (25%)
Query: 85 PKRALSNNFAPVDELPPTQCQVIQGSLPSCLD---------------EPYHLFDGDAMLH 129
P L+ NF PV E PPT+ ++G LP CL+ YH FDGD M+H
Sbjct: 47 PHHYLTGNFGPVTETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIH 106
Query: 130 CIRISQGQATFCSRCVKTYKYTIENTHE-----------------LLSLQLVFSQANLIS 172
+RI G+AT+ SR V+T + E ++++ ++ ++ ++
Sbjct: 107 GLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMKIGDLKGLFGLLMVNIHMLRTKLKVLD 166
Query: 173 INNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFDVKSGMNMTAH 232
++ G G N +L + L A+ E D PYA+++ +G D +TLG D+D + G + TAH
Sbjct: 167 LSYGGGTTNTALVYHHGKLLALSEADKPYAIKVFEDG--DLQTLGMLDYDKRLGHSFTAH 224
Query: 233 PKKRPCNRRNVC-------------------------------------FPLWSNTSVCD 255
PK P F + N +V
Sbjct: 225 PKVDPFTGEMFSFGYAHTPPYITYRVISKDGYMHDPVPITISDPIMMHDFAITENYAVFM 284
Query: 256 TL--------LLRCKRLFAAFGSTKASRIGVIPRCAKDSLQMRWFDVPGFNNIHAINEWD 307
L +++ K L +F STK +R GV+PR AKD +RWF++P H N W+
Sbjct: 285 DLPLIFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDEQHIRWFELPNCFIFHNANAWE 344
Query: 308 EEDGNVII 315
EED V+I
Sbjct: 345 EEDEVVLI 352
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 351 EADEDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIELR 410
E++ED+GY+V +VHD G+S V DAK+ D AVV+ VP G H FV E +L+
Sbjct: 479 ESEEDDGYLVLFVHDENAGKSFVHVIDAKTMSADPVAVVELPNRVPYGFHAFFVTEEQLQ 538
Query: 411 KLYKC 415
+ K
Sbjct: 539 EQAKL 543
>sp|Q84KG5|CCD_CROSA Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus
GN=CCD PE=1 SV=1
Length = 546
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 152/364 (41%), Gaps = 92/364 (25%)
Query: 30 SSSSSQRKTSLSSSSQRKTSSSSSSARTMIVNTINNLFNNLMMRNSNYKLQPSLDPKRAL 89
+ + + S+ + + + + SSA +I + LF++ P L
Sbjct: 5 AKEEVEERRSIVAVNPQPSKGLVSSAVDLIEKAVVYLFHD------------KSKPCHYL 52
Query: 90 SNNFAPV-DELPPTQCQVIQGSLPSCLD---------------EPYHLFDGDAMLHCIRI 133
S NFAPV DE PP ++G LP CL+ YH FDGD M+H +RI
Sbjct: 53 SGNFAPVVDETPPCPDLPVRGHLPECLNGEFVRVGPNPKFMPVAGYHWFDGDGMIHGMRI 112
Query: 134 SQGQATFCSRCVKTYKYTIENTHE-----------------LLSLQLVFSQANLISINNG 176
G+AT+ SR VKT + E E ++ +QL+ ++ +I ++ G
Sbjct: 113 KDGKATYASRYVKTSRLKQEEYFEGPKFMKIGDLKGFFGLFMVQMQLLRAKLKVIDVSYG 172
Query: 177 FGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFDVKSGMNMTAHPKKR 236
G N +L + L A+ E D PY V++ +G D +TLG D+D + + TAHPK
Sbjct: 173 VGTGNTALIYHHGKLLALSEADKPYVVKVLEDG--DLQTLGLLDYDKRLSHSFTAHPKVD 230
Query: 237 PCNRRNVC-------------------------------------FPLWSNTSVCDTL-- 257
P F + N S+ L
Sbjct: 231 PFTDEMFTFGYAHTPPYVTYRVISKDGVMRDPVPITIPASVMMHDFAITENYSIFMDLPL 290
Query: 258 ------LLRCKRLFAAFGSTKASRIGVIPRCAKDSLQMRWFDVPGFNNIHAINEWDEEDG 311
+++ +L +F +TK +R GV+PR AKD +RWF++P H N W+E D
Sbjct: 291 YFQPKEMVKGGKLIFSFDATKKARFGVLPRYAKDDSLIRWFELPNCFIFHNANAWEEGDE 350
Query: 312 NVII 315
V+I
Sbjct: 351 VVLI 354
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 351 EADEDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIELR 410
+++ED+GY++ +VHD TG+S+ V DAK+ + AVV+ VP G H FV E +L+
Sbjct: 481 KSEEDDGYLIFFVHDENTGKSEVNVIDAKTMSAEPVAVVELPNRVPYGFHAFFVNEEQLQ 540
>sp|Q9C6Z1|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic
OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1
Length = 589
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 152/361 (42%), Gaps = 93/361 (25%)
Query: 35 QRKTSLSSSSQRKTSSSSSSARTMIVNTINNLFNNLMMRNSNYKLQPSLDPKRALSNNFA 94
++ TS + QR S++ A T L+ R + L ++DP+ +S N+A
Sbjct: 70 EKDTSRWNPLQRAASAALDFAETA-----------LLRRERSKPLPKTVDPRHQISGNYA 118
Query: 95 PVDELPPTQCQVIQGSLPSCLD------------EP---YHLFDGDAMLHCIRISQGQAT 139
PV E + G +P C+D EP +HLFDGD M+H ++I+ G A+
Sbjct: 119 PVPEQSVKSSLSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGMVHAVKITNGDAS 178
Query: 140 FCSRCVKTYKYTIE---------------NTHELLSLQLVFSQANLISI---NNGFGLAN 181
+ R +T + E + H ++ ++F L + NG G+AN
Sbjct: 179 YSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFGLLNHKNGTGVAN 238
Query: 182 ASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFDVKSGMNMTAHPKKRPCNRR 241
A L + D L A+ E DLPY VR+T NGD + T+GR DFD + M AHPK P +
Sbjct: 239 AGLVYFHDRLLAMSEDDLPYQVRVTDNGDLE--TIGRFDFDGQLSSAMIAHPKIDPVTKE 296
Query: 242 ---------------------------NVCFPLWSNTSVCD-------------TLLLRC 261
+V PL S T + D ++ +
Sbjct: 297 LFALSYDVVKKPYLKYFKFSPEGEKSPDVEIPLASPTMMHDFAITENFVVIPDQQVVFKL 356
Query: 262 KRLF-----AAFGSTKASRIGVIPRCAKDSLQMRWFDVPGFNNIHAINEWD--EEDGNVI 314
+F + K SR G++PR AKD+ +M W + P H N W+ E D V+
Sbjct: 357 SDMFLGKSPVKYDGEKISRFGILPRNAKDASEMVWVESPETFCFHLWNAWESPETDEVVV 416
Query: 315 I 315
I
Sbjct: 417 I 417
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 351 EAD-EDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIEL 409
E+D ED+GY++S+VHD ++ ES+ + +A + L++EA VK VP G HG FV ++
Sbjct: 528 ESDGEDDGYIMSFVHDEESWESELHIVNAVT--LELEATVKLPSRVPYGFHGTFVNSADM 585
>sp|Q9M6E8|NCED1_PHAVU 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus
vulgaris GN=NCED1 PE=2 SV=1
Length = 615
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 140/325 (43%), Gaps = 80/325 (24%)
Query: 70 LMMRNSNYKLQPSLDPKRALSNNFAPVDELPPTQCQVIQGSLPSCLD------------E 117
L+ S + L + DPK ++ NFAPV E Q + G +P C+D E
Sbjct: 123 LVSHESKHPLPKTADPKVQIAGNFAPVPEHAADQALPVVGKIPKCIDGVYVRNGANPLYE 182
Query: 118 P---YHLFDGDAMLHCIRISQGQATFCSRCVKTYKYTIENT---------------HELL 159
P +H FDGD M+H ++ + G A++ R +T + E + H +
Sbjct: 183 PVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGI 242
Query: 160 SLQLVF---SQANLISINNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTL 216
+ L+F S L+ ++G G+ANA L + +HL A+ E DLPY VR+TSNG D T+
Sbjct: 243 ARLLLFYARSLFQLVDGSHGMGVANAGLVYFNNHLLAMSEDDLPYHVRITSNG--DLTTV 300
Query: 217 GRHDFDVKSGMNMTAHPKKRPCNRR---------------------------NVCFPLWS 249
GR+DF+ + M AHPK P N +V PL
Sbjct: 301 GRYDFNGQLNSTMIAHPKLDPVNGDLHALSYDVVQKPYLKYFRFSADGVKSPDVEIPLKE 360
Query: 250 NTSVCD-------------TLLLRCKRLFAA-----FGSTKASRIGVIPRCAKDSLQMRW 291
T + D ++ + + + K SR G++ + AKD+ MRW
Sbjct: 361 PTMMHDFAITENFVVVPDQQVVFKLTEMITGGSPVVYDKNKTSRFGILDKNAKDANAMRW 420
Query: 292 FDVPGFNNIHAINEWDEEDGNVIIL 316
D P H N W+E + + I++
Sbjct: 421 IDAPECFCFHLWNAWEEPETDEIVV 445
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 353 DEDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIELRK 411
+E +GY++++VHD K +S+ + +A++ L +EA +K VP G HG F+ +LRK
Sbjct: 557 EEGDGYILAFVHDEKEWKSELQIVNAQN--LKLEASIKLPSRVPYGFHGTFIHSKDLRK 613
>sp|O65572|CCD1_ARATH Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis
thaliana GN=CCD1 PE=1 SV=2
Length = 538
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 134/309 (43%), Gaps = 80/309 (25%)
Query: 85 PKRALSNNFAPV-DELPPTQCQVIQGSLPSCLD---------------EPYHLFDGDAML 128
P LS NFAP+ DE PP + + G LP CL+ YH FDGD M+
Sbjct: 44 PLHYLSGNFAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMI 103
Query: 129 HCIRISQGQATFCSRCVKTYKYTIENTHE-----------------LLSLQLVFSQANLI 171
H +RI G+AT+ SR VKT + E ++++Q + ++ ++
Sbjct: 104 HGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLKIL 163
Query: 172 SINNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFDVKSGMNMTA 231
G G AN +L + L A+ E D PY +++ +G D +TLG D+D + + TA
Sbjct: 164 DNTYGNGTANTALVYHHGKLLALQEADKPYVIKVLEDG--DLQTLGIIDYDKRLTHSFTA 221
Query: 232 HPKKRPCNRRNVCFP-------------------------------LWSNTSVCDTL--- 257
HPK P F + + ++ +T
Sbjct: 222 HPKVDPVTGEMFTFGYSHTPPYLTYRVISKDGIMHDPVPITISEPIMMHDFAITETYAIF 281
Query: 258 -----------LLRCKRLFAAFGSTKASRIGVIPRCAKDSLQMRWFDVPGFNNIHAINEW 306
+++ K++ +F TK +R GV+PR AKD L +RWF++P H N W
Sbjct: 282 MDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAW 341
Query: 307 DEEDGNVII 315
+EED V+I
Sbjct: 342 EEEDEVVLI 350
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 352 ADEDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIELRK 411
A+ED+GY++ +VHD TG+S V DAK+ + AVV+ VP G H LFV E +L++
Sbjct: 475 AEEDDGYLIFFVHDENTGKSCVTVIDAKTMSAEPVAVVELPHRVPYGFHALFVTEEQLQE 534
>sp|O24592|NCED1_MAIZE 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays
GN=VP14 PE=1 SV=2
Length = 604
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 139/335 (41%), Gaps = 82/335 (24%)
Query: 77 YKLQPSLDPKRALSNNFAPVDELPPTQCQVIQGSLPSCLDEPY---------------HL 121
+ L + DP ++ NFAPV E PP + G +P +D Y HL
Sbjct: 111 HGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHL 170
Query: 122 FDGDAMLHCIRISQGQA-TFCSRCVKTYKYTIENT----------------HELLSLQLV 164
FDGD M+H +RI G A ++ R +T + E + L L
Sbjct: 171 FDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALF 230
Query: 165 FSQA--NLISINNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFD 222
+++A L+ + G G+ANA L + L A+ E DLPY VR+ +GD + T+GR+DFD
Sbjct: 231 YARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLE--TVGRYDFD 288
Query: 223 VKSGMNMTAHPK----------------KRP-----------CNRRNVCFPLWSNTSVCD 255
+ G M AHPK KRP +V PL T + D
Sbjct: 289 GQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHD 348
Query: 256 -------------TLLLRCKRLF-----AAFGSTKASRIGVIPRCAKDSLQMRWFDVPGF 297
++ + + + K SR GV+P+ A D+ +M W DVP
Sbjct: 349 FAITENLVVVPDHQVVFKLQEMLRGGSPVVLDKEKTSRFGVLPKHAADASEMAWVDVPDC 408
Query: 298 NNIHAINEW-DEEDGNVIILAPNILSIEQAFGKTE 331
H N W DE G V+++ + + F +++
Sbjct: 409 FCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESD 443
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 319 NILSIEQAFGKTELVPCLMEKNTRSGGVAANTEADEDNGYVVSYVHDAKTGESKFLVTDA 378
+ E G+ PC + + AA ED+GYV+++VHD + G S+ LV +A
Sbjct: 516 ELTKFEYGEGRFGGEPCFVPMDP-----AAAHPRGEDDGYVLTFVHDERAGTSELLVVNA 570
Query: 379 KSPHLDIEAVVKSTQSVPTGSHGLFVREIEL 409
+ +EA V+ VP G HG F+ EL
Sbjct: 571 AD--MRLEATVQLPSRVPFGFHGTFITGQEL 599
>sp|O49505|NCED2_ARATH 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic
OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1
Length = 583
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 142/331 (42%), Gaps = 80/331 (24%)
Query: 70 LMMRNSNYKLQPSLDPKRALSNNFAPVDELPPTQCQVIQGSLPSCLD------------E 117
L+ + L + DP+ ++ N++PV E + ++G++P C+D E
Sbjct: 87 LISHEQDSPLPKTADPRVQIAGNYSPVPESSVRRNLTVEGTIPDCIDGVYIRNGANPMFE 146
Query: 118 P---YHLFDGDAMLHCIRISQGQATFCSRCVKTYKYTIENT----------------HEL 158
P +HLFDGD M+H ++I+ G A++ R KT + E +
Sbjct: 147 PTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGI 206
Query: 159 LSLQLVFSQA--NLISINNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTL 216
L L +++ LI+ NG G+ANA L + + L A+ E DLPY +++T G D +T+
Sbjct: 207 ARLMLFYARGLCGLINNQNGVGVANAGLVYFNNRLLAMSEDDLPYQLKITQTG--DLQTV 264
Query: 217 GRHDFDVKSGMNMTAHPKKRPCNRR---------------------------NVCFPLWS 249
GR+DFD + M AHPK P + + PL +
Sbjct: 265 GRYDFDGQLKSAMIAHPKLDPVTKELHALSYDVVKKPYLKYFRFSPDGVKSPELEIPLET 324
Query: 250 NTSVCD-------------TLLLRCKRLFAA-----FGSTKASRIGVIPRCAKDSLQMRW 291
T + D ++ + + + F K SR+G++P+ A ++ Q+ W
Sbjct: 325 PTMIHDFAITENFVVIPDQQVVFKLGEMISGKSPVVFDGEKVSRLGIMPKDATEASQIIW 384
Query: 292 FDVPGFNNIHAINEWDEEDGNVIILAPNILS 322
+ P H N W+ + I++ + +S
Sbjct: 385 VNSPETFCFHLWNAWESPETEEIVVIGSCMS 415
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 326 AFGKTELVPCLMEKNTRSG-----------GVAANTEADEDNGYVVSYVHDAKTGESKFL 374
F K +L M+K G G + N E +ED+GY+ +VHD +T S+
Sbjct: 487 GFAKVDLCTGEMKKYIYGGEKYGGEPFFLPGNSGNGEENEDDGYIFCHVHDEETKTSELQ 546
Query: 375 VTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIEL 409
+ +A +L +EA +K VP G HG FV EL
Sbjct: 547 IINAV--NLKLEATIKLPSRVPYGFHGTFVDSNEL 579
>sp|Q9M9F5|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic
OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1
Length = 657
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 125/311 (40%), Gaps = 80/311 (25%)
Query: 84 DPKRALSNNFAPVDELPPTQCQVIQGSLPSCLDEPY---------------HLFDGDAML 128
DP ++ NF PV E P + G++P C+ Y HLFDGD M+
Sbjct: 178 DPAVQIAGNFFPVPEKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMV 237
Query: 129 HCIRISQGQATFCSRCVKTYKYTIE---------------NTHELLSLQLVFSQANLISI 173
H +R G ++ R +T + E + H ++ ++F+ L +
Sbjct: 238 HAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGL 297
Query: 174 ---NNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFDVKSGMNMT 230
G G+ANA L + HL A+ E DLPY V++T GD +T GR+DFD + M
Sbjct: 298 VDPTGGLGVANAGLVYFNGHLLAMSEDDLPYHVKVTQTGDLETS--GRYDFDGQLKSTMI 355
Query: 231 AHPKKRPCNRR---------------------------NVCFPLWSNTSVCD-------- 255
AHPK P R +V PL T + D
Sbjct: 356 AHPKIDPETRELFALSYDVVSKPYLKYFRFTSDGEKSPDVEIPLDQPTMIHDFAITENFV 415
Query: 256 -----TLLLRCKRLF-----AAFGSTKASRIGVIPRCAKDSLQMRWFDVPGFNNIHAINE 305
++ R + + K SR G++ + AKD+ ++W +VP H N
Sbjct: 416 VIPDQQVVFRLPEMIRGGSPVVYDEKKKSRFGILNKNAKDASSIQWIEVPDCFCFHLWNS 475
Query: 306 WDEEDGNVIIL 316
W+E + + +++
Sbjct: 476 WEEPETDEVVV 486
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 351 EADEDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIELR 410
+ +ED GY++ +VHD + +S+ + +A + + +EA V VP G HG F+ + +L
Sbjct: 595 DGEEDGGYIMVFVHDEEKVKSELQLINAVN--MKLEATVTLPSRVPYGFHGTFISKEDLS 652
Query: 411 KLYKC 415
K C
Sbjct: 653 KQALC 657
>sp|Q84K96|ZCD_CROSA Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus
sativus GN=ZCD PE=1 SV=1
Length = 369
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 119/269 (44%), Gaps = 57/269 (21%)
Query: 174 NNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFDVKSGMNMTAHP 233
G GLAN SL F L A+CE DLPY VRL+ D D T+GR + +V S + TAHP
Sbjct: 6 TKGIGLANTSLQFSNGRLHALCEYDLPYVVRLSPE-DGDISTVGRIENNV-STKSTTAHP 63
Query: 234 KKRPCNRRNVCF-------------------------PLWS------------------- 249
K P F P++S
Sbjct: 64 KTDPVTGETFSFSYGPIQPYVTYSRYDCDGKKSGPDVPIFSFKEPSFVHDFAITEHYAVF 123
Query: 250 ---NTSVCDTLLLRCKRLFAAFGSTKASRIGVIPRCAKDSLQMRWFDVPGFNNIHAINEW 306
+ ++R +R+ K R+G++PR A +MRWFDVPGFN +H +N W
Sbjct: 124 PDIQIVMKPAEIVRGRRMIGP-DLEKVPRLGLLPRYATSDSEMRWFDVPGFNMVHVVNAW 182
Query: 307 DEEDGN-VIILAPNILSIEQAFGKTELVPCLMEK---NTRSGGVAANTEADEDNGYVVSY 362
+EE G V+I+APN+ IE A + +L+ +E +SG V+ + E+ + V
Sbjct: 183 EEEGGEVVVIVAPNVSPIENAIDRFDLLHVSVEMARIELKSGSVSRTLLSAENLDFGV-- 240
Query: 363 VHDAKTG-ESKFLVTDAKSPHLDIEAVVK 390
+H +G +S++ P I VVK
Sbjct: 241 IHRGYSGRKSRYAYLGVGDPMPKIRGVVK 269
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 41/58 (70%)
Query: 352 ADEDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIEL 409
+ED+GYVVSY+HD GES F+V DA+SP L+I A V + VP G HGLFV E EL
Sbjct: 308 GEEDDGYVVSYLHDEGKGESSFVVMDARSPELEILAEVVLPRRVPYGFHGLFVTEAEL 365
>sp|Q9LRR7|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic
OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1
Length = 599
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 97/199 (48%), Gaps = 38/199 (19%)
Query: 75 SNYKLQP---SLDPKRALSNNFAPVDELPPTQCQVIQGSLPSC------------LDEP- 118
S+ KL P + DP ++ NFAPV+E P + + G LP L EP
Sbjct: 106 SHEKLHPLPKTADPSVQIAGNFAPVNEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPV 165
Query: 119 --YHLFDGDAMLHCIRISQGQATFCSRCVKTYKYTIE---------------NTHELLSL 161
+H FDGD M+H ++ G A++ R +T ++ E + H ++
Sbjct: 166 TGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIAR 225
Query: 162 QLVF---SQANLISINNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGR 218
++F + A ++ +G G+ANA L + L A+ E DLPY V++T NG D KT+GR
Sbjct: 226 LMLFYARAAAGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNG--DLKTVGR 283
Query: 219 HDFDVKSGMNMTAHPKKRP 237
DFD + M AHPK P
Sbjct: 284 FDFDGQLESTMIAHPKVDP 302
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 358 YVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIELRK 411
Y++ +VHD KT +S+ + +A S L++EA VK VP G HG F+ +L K
Sbjct: 545 YILCFVHDEKTWKSELQIVNAVS--LEVEATVKLPSRVPYGFHGTFIGADDLAK 596
>sp|Q9LRM7|NCED6_ARATH 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic
OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1
Length = 577
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 125/323 (38%), Gaps = 83/323 (25%)
Query: 76 NYKLQPSLDPKRALSNNFAPVDELPPTQCQVIQGSLPSCLDEPY---------------H 120
N L DP LS NFAPV+E P + G +PSCL Y H
Sbjct: 88 NRPLPKPTDPAVQLSGNFAPVNECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHH 147
Query: 121 LFDGDAMLHCIRIS-QGQATFCSRCVKTYKYTIENT---------------HELLSLQLV 164
LFDGD M+H + I Q ++ R KT + E H L+ +
Sbjct: 148 LFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLAL 207
Query: 165 FSQ---ANLISINNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDF 221
F+ L+ G G+ANA + F L A+ E DLPY V++ GD + T+GR F
Sbjct: 208 FTARAGIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLE--TIGRFGF 265
Query: 222 DVKSGMNMTAHPK----------------KRP---------CNR--RNVCFPLWSNTSVC 254
D + ++ AHPK K+P C + R+V L T +
Sbjct: 266 DDQIDSSVIAHPKVDATTGDLHTLSYNVLKKPHLRYLKFNTCGKKTRDVEITLPEPTMIH 325
Query: 255 D-------------TLLLRCKRLFAA-----FGSTKASRIGVIPRCAKDSLQMRWFDVPG 296
D ++ + + + K +R GV+ + + W DVP
Sbjct: 326 DFAITENFVVIPDQQMVFKLSEMIRGGSPVIYVKEKMARFGVLSKQDLTGSDINWVDVPD 385
Query: 297 FNNIHAINEWDE--EDGNVIILA 317
H N W+E E+G+ +I+
Sbjct: 386 CFCFHLWNAWEERTEEGDPVIVV 408
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 341 TRSGG---VAANTEADEDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPT 397
+R GG E +ED GYV+ +V D + ES+F+V DA + A V+ + VP
Sbjct: 503 SRFGGEPCFVPEGEGEEDKGYVMGFVRDEEKDESEFVVVDATD--MKQVAAVRLPERVPY 560
Query: 398 GSHGLFVREIELRK 411
G HG FV E +L++
Sbjct: 561 GFHGTFVSENQLKE 574
>sp|P74334|ACOX_SYNY3 Apocarotenoid-15,15'-oxygenase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1541 PE=1 SV=1
Length = 490
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 120 HLFDGDAMLHCIRI-SQGQATFCSRCVKTYKYTIENTHELLSLQLVF-SQANLISINNGF 177
H FDGD M+ + G+ F S+ V+T Y E + + VF SQ + F
Sbjct: 67 HPFDGDGMVTAFKFPGDGRVHFQSKFVRTQGYVEEQKAGKMIYRGVFGSQPAGGWLKTIF 126
Query: 178 GL-----ANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFD--VKSGMNMT 230
L AN ++++ GD L A+ EG P+ + ++ T+G D + G ++
Sbjct: 127 DLRLKNIANTNITYWGDRLLALWEGGQPHRLE-----PSNLATIGLDDLGGILAEGQPLS 181
Query: 231 AHPKKRPCNRRNVCFPLWSNTSV 253
AHP+ P + + P + S+
Sbjct: 182 AHPRIDPASTFDGGQPCYVTFSI 204
>sp|P54138|MSHA_MYCLE D-inositol 3-phosphate glycosyltransferase OS=Mycobacterium leprae
(strain TN) GN=mshA PE=3 SV=2
Length = 428
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 15/140 (10%)
Query: 147 TYKYTIENTHELLSLQLVFSQANLISI---NNGFGLANASLSFLGDHLFAICEGDLPYAV 203
T + T +L VF A+L+++ + FGL G + A G LP AV
Sbjct: 274 TARVTFLPPQSRTNLATVFQAADLVAVPSYSESFGLVAVEAQACGTPVVAAAVGGLPVAV 333
Query: 204 RLTSNGDTDTKTLGR---HDFD-VKSGMNMTAHPKKRPCNRRNVCFPL---WSNTSVCDT 256
R +G T T G H D V + ++A P+ R +R V W NT+ D
Sbjct: 334 R---DGVTGTLVFGHNVGHWADAVDQLLRLSAGPQARAISRAAVVHAAQFSWDNTT--DA 388
Query: 257 LLLRCKRLFAAFGSTKASRI 276
LL +R F +T+ R+
Sbjct: 389 LLASYRRAIGDFTATRQHRV 408
>sp|B8ZT88|MSHA_MYCLB D-inositol 3-phosphate glycosyltransferase OS=Mycobacterium leprae
(strain Br4923) GN=mshA PE=3 SV=1
Length = 428
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 15/140 (10%)
Query: 147 TYKYTIENTHELLSLQLVFSQANLISI---NNGFGLANASLSFLGDHLFAICEGDLPYAV 203
T + T +L VF A+L+++ + FGL G + A G LP AV
Sbjct: 274 TARVTFLPPQSRTNLATVFQAADLVAVPSYSESFGLVAVEAQACGTPVVAAAVGGLPVAV 333
Query: 204 RLTSNGDTDTKTLGR---HDFD-VKSGMNMTAHPKKRPCNRRNVCFPL---WSNTSVCDT 256
R +G T T G H D V + ++A P+ R +R V W NT+ D
Sbjct: 334 R---DGVTGTLVFGHNVGHWADAVDQLLRLSAGPQARAISRAAVVHAAQFSWDNTT--DA 388
Query: 257 LLLRCKRLFAAFGSTKASRI 276
LL +R F +T+ R+
Sbjct: 389 LLASYRRAIGDFTATRQHRV 408
>sp|Q6PBW5|RP65A_DANRE Retinoid isomerohydrolase OS=Danio rerio GN=rpe65a PE=2 SV=1
Length = 531
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 107 IQGSL----PSCLD---EP-YHLFDGDAMLHCIRISQGQATFCSRCVKTYKYT 151
I+GSL P + EP YHLFDG A++H S GQ T+ + VKT Y
Sbjct: 38 IKGSLLRLGPGLFEAGAEPFYHLFDGQALMHKFDFSNGQVTYFRKFVKTDAYV 90
>sp|A9C3R8|RP65C_DANRE Retinal Mueller cells isomerohydrolase OS=Danio rerio GN=rpe65c
PE=1 SV=1
Length = 532
Score = 38.9 bits (89), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 116 DEP-YHLFDGDAMLHCIRISQGQATFCSRCVKTYKYT 151
DEP YHLFDG A+LH + G+ T+ R ++T Y
Sbjct: 54 DEPFYHLFDGQALLHKFDLKDGRVTYHRRFIRTDAYV 90
>sp|Q9YGX2|RPE65_CHICK Retinoid isomerohydrolase OS=Gallus gallus GN=RPE65 PE=1 SV=1
Length = 533
Score = 38.5 bits (88), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 16/83 (19%)
Query: 85 PKRALSNNFAPVDELPPTQCQVIQGSLPSCLD---------------EP-YHLFDGDAML 128
P F V+EL + G +P+ L EP YHLFDG A+L
Sbjct: 8 PAGGYKKLFETVEELSSPVTAHVTGRIPTWLRGSLLRCGPGLFEVGAEPFYHLFDGQALL 67
Query: 129 HCIRISQGQATFCSRCVKTYKYT 151
H +G T+ R V+T Y
Sbjct: 68 HKFDFKEGHVTYHRRFVRTDAYV 90
>sp|Q8AXN9|RPE65_CYNPY Retinoid isomerohydrolase OS=Cynops pyrrhogaster GN=RPE65 PE=2 SV=3
Length = 533
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 16/83 (19%)
Query: 85 PKRALSNNFAPVDELPPTQCQVIQGSLPSCL----------------DEPYHLFDGDAML 128
P F V+EL + G +P L ++ YHLFDG A+L
Sbjct: 8 PAGGYKKLFETVEELASPITAHVTGRIPVWLTGSLLRCGPGLFEVGSEQFYHLFDGQALL 67
Query: 129 HCIRISQGQATFCSRCVKTYKYT 151
H +G T+ R ++T Y
Sbjct: 68 HKFDFKEGHVTYHRRFIRTDTYV 90
>sp|O70276|RPE65_RAT Retinoid isomerohydrolase OS=Rattus norvegicus GN=Rpe65 PE=2 SV=3
Length = 533
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 119 YHLFDGDAMLHCIRISQGQATFCSRCVKTYKYT 151
YHLFDG A+LH +G T+ R ++T Y
Sbjct: 58 YHLFDGQALLHKFDFKEGHVTYYRRFIRTDAYV 90
>sp|Q9TVB8|RPE65_CANFA Retinoid isomerohydrolase OS=Canis familiaris GN=RPE65 PE=1 SV=3
Length = 533
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 16/83 (19%)
Query: 85 PKRALSNNFAPVDELPPTQCQVIQGSLPSCL---------------DEP-YHLFDGDAML 128
P F V+EL + G +P L EP YHLFDG A+L
Sbjct: 8 PAGGYKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALL 67
Query: 129 HCIRISQGQATFCSRCVKTYKYT 151
H +G T+ R ++T Y
Sbjct: 68 HKFDFKEGHVTYHRRFIRTDAYV 90
>sp|Q91ZQ5|RPE65_MOUSE Retinoid isomerohydrolase OS=Mus musculus GN=Rpe65 PE=1 SV=3
Length = 533
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 16/83 (19%)
Query: 85 PKRALSNNFAPVDELPPTQCQVIQGSLPSCL---------------DEP-YHLFDGDAML 128
P F V+EL + G +P L EP YHLFDG A+L
Sbjct: 8 PAGGYKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALL 67
Query: 129 HCIRISQGQATFCSRCVKTYKYT 151
H +G T+ R ++T Y
Sbjct: 68 HKFDFKEGHVTYHRRFIRTDAYV 90
>sp|Q28175|RPE65_BOVIN Retinoid isomerohydrolase OS=Bos taurus GN=RPE65 PE=1 SV=3
Length = 533
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 119 YHLFDGDAMLHCIRISQGQATFCSRCVKTYKYT 151
YHLFDG A+LH +G T+ R ++T Y
Sbjct: 58 YHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYV 90
>sp|Q16518|RPE65_HUMAN Retinoid isomerohydrolase OS=Homo sapiens GN=RPE65 PE=1 SV=3
Length = 533
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 119 YHLFDGDAMLHCIRISQGQATFCSRCVKTYKYT 151
YHLFDG A+LH +G T+ R ++T Y
Sbjct: 58 YHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYV 90
>sp|Q9XT71|RPE65_CHLAE Retinoid isomerohydrolase OS=Chlorocebus aethiops GN=RPE65 PE=2
SV=3
Length = 533
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 119 YHLFDGDAMLHCIRISQGQATFCSRCVKTYKYT 151
YHLFDG A+LH +G T+ R ++T Y
Sbjct: 58 YHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYV 90
>sp|B7I357|RL1_ACIB5 50S ribosomal protein L1 OS=Acinetobacter baumannii (strain AB0057)
GN=rplA PE=3 SV=1
Length = 231
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 269 GSTKASRIGVIPRCAK-DSLQMRWFDVPGFNNIHAINEWDEEDGNVIILAPNILSIEQAF 327
G+ K R+ V + A+ ++ + DV GF+++ + D +V+I AP+ + +
Sbjct: 68 GTGKTVRVAVFAQGAQAEAAKEAGADVVGFDDLAESIQGGNLDFDVVIAAPDAMRVVGKL 127
Query: 328 GKTELVPCLMEKNTRSGGVAANTEADEDNGYVVSYVHDAKTGESKFLVT----------- 376
G T L P + N + G V + V V +AK+G++++ V
Sbjct: 128 G-TILGPRGLMPNPKVGTVTPD---------VAGAVKNAKSGQARYRVDKAGIIHAAIGQ 177
Query: 377 ---DAKSPHLDIEAVVKSTQSV-PTGSHGLFVREIEL 409
DA + ++E +V + + P S G+++++I L
Sbjct: 178 VGFDAAAIRQNVETLVADLEKLKPATSKGVYIKKITL 214
>sp|B0VLZ9|RL1_ACIBS 50S ribosomal protein L1 OS=Acinetobacter baumannii (strain SDF)
GN=rplA PE=3 SV=1
Length = 231
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 269 GSTKASRIGVIPRCAK-DSLQMRWFDVPGFNNIHAINEWDEEDGNVIILAPNILSIEQAF 327
G+ K R+ V + A+ ++ + DV GF+++ + D +V+I AP+ + +
Sbjct: 68 GTGKTVRVAVFAQGAQAEAAKEAGADVVGFDDLAESIQGGNLDFDVVIAAPDAMRVVGKL 127
Query: 328 GKTELVPCLMEKNTRSGGVAANTEADEDNGYVVSYVHDAKTGESKFLVT----------- 376
G T L P + N + G V + V V +AK+G++++ V
Sbjct: 128 G-TILGPRGLMPNPKVGTVTPD---------VAGAVKNAKSGQARYRVDKAGIIHAAIGQ 177
Query: 377 ---DAKSPHLDIEAVVKSTQSV-PTGSHGLFVREIEL 409
DA + ++E +V + + P S G+++++I L
Sbjct: 178 VGFDAAAIRQNVETLVADLKKLKPATSKGVYIKKITL 214
>sp|B0VDG5|RL1_ACIBY 50S ribosomal protein L1 OS=Acinetobacter baumannii (strain AYE)
GN=rplA PE=3 SV=1
Length = 231
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 269 GSTKASRIGVIPRCAK-DSLQMRWFDVPGFNNIHAINEWDEEDGNVIILAPNILSIEQAF 327
G+ K R+ V + A+ ++ + DV GF+++ + D +V+I AP+ + +
Sbjct: 68 GTGKTVRVAVFAQGAQAEAAKEAGADVVGFDDLAESIQGGNLDFDVVIAAPDAMRVVGKL 127
Query: 328 GKTELVPCLMEKNTRSGGVAANTEADEDNGYVVSYVHDAKTGESKFLVT----------- 376
G T L P + N + G V + V V +AK+G++++ V
Sbjct: 128 G-TILGPRGLMPNPKVGTVTPD---------VAGAVKNAKSGQARYRVDKAGIIHAAIGQ 177
Query: 377 ---DAKSPHLDIEAVVKSTQSV-PTGSHGLFVREIEL 409
DA + ++E +V + + P S G+++++I L
Sbjct: 178 VGFDAAAIRQNVETLVADLKKLKPATSKGVYIKKITL 214
>sp|A3M1G0|RL1_ACIBT 50S ribosomal protein L1 OS=Acinetobacter baumannii (strain ATCC
17978 / NCDC KC 755) GN=rplA PE=3 SV=3
Length = 231
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 269 GSTKASRIGVIPRCAK-DSLQMRWFDVPGFNNIHAINEWDEEDGNVIILAPNILSIEQAF 327
G+ K R+ V + A+ ++ + DV GF+++ + D +V+I AP+ + +
Sbjct: 68 GTGKTVRVAVFAQGAQAEAAKEAGADVVGFDDLAESIQGGNLDFDVVIAAPDAMRVVGKL 127
Query: 328 GKTELVPCLMEKNTRSGGVAANTEADEDNGYVVSYVHDAKTGESKFLVT----------- 376
G T L P + N + G V + V V +AK+G++++ V
Sbjct: 128 G-TILGPRGLMPNPKVGTVTPD---------VAGAVKNAKSGQARYRVDKAGIIHAAIGQ 177
Query: 377 ---DAKSPHLDIEAVVKSTQSV-PTGSHGLFVREIEL 409
DA + ++E +V + + P S G+++++I L
Sbjct: 178 VGFDAAAIRQNVETLVADLKKLKPATSKGVYIKKITL 214
>sp|B7H1K1|RL1_ACIB3 50S ribosomal protein L1 OS=Acinetobacter baumannii (strain
AB307-0294) GN=rplA PE=3 SV=1
Length = 231
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 269 GSTKASRIGVIPRCAK-DSLQMRWFDVPGFNNIHAINEWDEEDGNVIILAPNILSIEQAF 327
G+ K R+ V + A+ ++ + DV GF+++ + D +V+I AP+ + +
Sbjct: 68 GTGKTVRVAVFAQGAQAEAAKEAGADVVGFDDLAESIQGGNLDFDVVIAAPDAMRVVGKL 127
Query: 328 GKTELVPCLMEKNTRSGGVAANTEADEDNGYVVSYVHDAKTGESKFLVT----------- 376
G T L P + N + G V + V V +AK+G++++ V
Sbjct: 128 G-TILGPRGLMPNPKVGTVTPD---------VAGAVKNAKSGQARYRVDKAGIIHAAIGQ 177
Query: 377 ---DAKSPHLDIEAVVKSTQSV-PTGSHGLFVREIEL 409
DA + ++E +V + + P S G+++++I L
Sbjct: 178 VGFDAAAIRQNVETLVADLKKLKPATSKGVYIKKITL 214
>sp|A9C3R9|RP65B_DANRE All-trans-retinyl ester 13-cis isomerohydrolase OS=Danio rerio
GN=rpe65b PE=1 SV=1
Length = 532
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 116 DEPY-HLFDGDAMLHCIRISQGQATFCSRCVKTYKYT 151
DEP+ HLFDG A++H + G+ T+ + ++T Y
Sbjct: 54 DEPFNHLFDGQALIHKFDLKDGRVTYHRKFIRTDAYV 90
>sp|Q6FF93|RL1_ACIAD 50S ribosomal protein L1 OS=Acinetobacter sp. (strain ADP1) GN=rplA
PE=3 SV=1
Length = 231
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 25/132 (18%)
Query: 293 DVPGFNNIHAINEWDEEDGNVIILAPNILSIEQAFGKTELVPCLMEKNTRSGGVAANTEA 352
D+ GF+++ + D +V+I AP+ + + G T L P + N + G V +
Sbjct: 93 DIVGFDDLAESIQQGNLDFDVVIAAPDAMRVVGKLG-TILGPRGLMPNPKVGTVTPD--- 148
Query: 353 DEDNGYVVSYVHDAKTGESKFLVTDAKSPHLDI-------EAVVKSTQSV--------PT 397
V + V +AK G++++ V A H I EA+ ++ +++ P
Sbjct: 149 ------VANAVKNAKAGQARYRVDKAGIIHAAIGQVGFTAEAIRQNVETLVADLKKLKPA 202
Query: 398 GSHGLFVREIEL 409
S G+++++I L
Sbjct: 203 TSKGVYIKKITL 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,351,756
Number of Sequences: 539616
Number of extensions: 6294773
Number of successful extensions: 30647
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 28332
Number of HSP's gapped (non-prelim): 1637
length of query: 420
length of database: 191,569,459
effective HSP length: 120
effective length of query: 300
effective length of database: 126,815,539
effective search space: 38044661700
effective search space used: 38044661700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)