Query 039955
Match_columns 420
No_of_seqs 234 out of 1027
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:41:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02258 9-cis-epoxycarotenoid 100.0 4.1E-99 9E-104 804.8 38.5 361 43-412 71-589 (590)
2 PLN02491 carotenoid 9,10(9',10 100.0 1.1E-93 2.4E-98 759.2 36.9 349 50-413 21-543 (545)
3 COG3670 Lignostilbene-alpha,be 100.0 5.5E-83 1.2E-87 649.9 24.8 312 86-407 19-489 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 1.1E-77 2.3E-82 629.6 25.3 308 90-406 1-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 5.5E-73 1.2E-77 608.2 31.9 312 87-406 58-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 1.1E-51 2.5E-56 436.7 16.2 352 50-413 72-582 (582)
7 KOG1285 Beta, beta-carotene 15 99.9 4.4E-23 9.5E-28 219.5 13.8 209 105-324 37-353 (582)
8 COG3823 Glutamine cyclotransfe 54.2 9.8 0.00021 37.2 2.5 37 183-224 95-132 (262)
9 PF02239 Cytochrom_D1: Cytochr 34.0 3E+02 0.0065 28.5 9.9 104 274-392 16-119 (369)
10 TIGR02276 beta_rpt_yvtn 40-res 29.8 1.1E+02 0.0024 20.4 4.1 28 369-399 12-39 (42)
11 PF02239 Cytochrom_D1: Cytochr 28.5 1E+02 0.0022 31.9 5.3 35 354-393 325-359 (369)
12 PF13570 PQQ_3: PQQ-like domai 23.3 83 0.0018 21.4 2.5 28 179-206 12-39 (40)
No 1
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=4.1e-99 Score=804.80 Aligned_cols=361 Identities=31% Similarity=0.572 Sum_probs=312.5
Q ss_pred CCCccCCCCchhhHHHHHHHHHHHHHhHhhhccCCCCCCCCCcchhcccCCcCCCcCCCCccceeeecCCCCCCC-----
Q 039955 43 SSQRKTSSSSSSARTMIVNTINNLFNNLMMRNSNYKLQPSLDPKRALSNNFAPVDELPPTQCQVIQGSLPSCLDE----- 117 (420)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pl~~~~dp~~~l~g~fapv~E~~~~~~~~V~G~IP~~L~G----- 117 (420)
....++|+..|++|+++||++|+.|++++ |+.+||+++.||+++|+|||+|+.|..+..++.|+|+||+||+|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RN 148 (590)
T PLN02258 71 TTQTPQLNPLQRAAAAALDAVESALVSHL--ERQHPLPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRN 148 (590)
T ss_pred cCCccccCcchhhHHHHHHHHHHHHhhhc--cccCCCCCCCCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEEEe
Confidence 34567899999999999999999999987 67999999999999999999999666667789999999999999
Q ss_pred ----------CCCccCCCCcEEEEEEeCCcEEEEEeecccHHHHHHHHcCCcccccccccc------------------c
Q 039955 118 ----------PYHLFDGDAMLHCIRISQGQATFCSRCVKTYKYTIENTHELLSLQLVFSQA------------------N 169 (420)
Q Consensus 118 ----------~~HwFDGDGMlha~~f~~G~v~Y~~RyV~T~~~~~E~~agr~~f~~~~~~~------------------g 169 (420)
++||||||||||+|+|+||+|+|+||||||++|++|+++||++|++.+++. +
T Consensus 149 GPnp~f~p~~~~H~FDGDGMvhav~f~dG~a~y~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~ 228 (590)
T PLN02258 149 GANPLFEPVAGHHLFDGDGMVHAVRIGNGSASYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFG 228 (590)
T ss_pred CCCCCCCCCCCCccccCCceEEEEEECCCeEEEEeeeecchhHHHHHhcCCcccccccccccccccccccchhhcccccc
Confidence 679999999999999999999999999999999999999999998744431 2
Q ss_pred ccccCCCCCccceEEEEeCCeEEEEeeCCccEEEccCCCCCCcccccccccCCcCCCCCCcccccccCCCC------cee
Q 039955 170 LISINNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFDVKSGMNMTAHPKKRPCNR------RNV 243 (420)
Q Consensus 170 ~~~~~~~~~~ANT~v~~~~grLlAl~E~~~Py~id~~~~~d~TLeTlG~~d~~g~l~~~ftAHPK~DP~tG------y~v 243 (420)
.++..+++|+|||||++|+||||||||+|+||+||+++++ ||||+|++||+|+|..+||||||+||.|| |++
T Consensus 229 ~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~l~~d~~~--TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~ 306 (590)
T PLN02258 229 LVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQVRITGDG--DLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDV 306 (590)
T ss_pred ccccccccCCCceeEEEECCEEEEEEcCCCceEecCCCCC--CcccCcccccCCccCcccccCceEcCCCCeEEEEEEec
Confidence 2333456799999999999999999999999999987666 49999999999999889999999999999 321
Q ss_pred ----------E-----------EeCCCcceeeeeeeeecccceEEe--------------c-------CCCCeEEEEEeC
Q 039955 244 ----------C-----------FPLWSNTSVCDTLLLRCKRLFAAF--------------G-------STKASRIGVIPR 281 (420)
Q Consensus 244 ----------~-----------i~l~~p~~iHDfaiT~~~eny~V~--------------G-------~~~~tr~gVipR 281 (420)
+ |++++++|||||||| |||+|| | +++++|||||||
T Consensus 307 ~~~p~l~~~~~d~~G~~~~~~~i~lp~p~~~HDFaiT---enY~Vf~d~Pl~~~~~~~~~g~~~~~~d~~~~srfgVipR 383 (590)
T PLN02258 307 VKKPYLKYFRFSPDGEKSPDVEIPLDQPTMMHDFAIT---ENFVVIPDQQVVFKLSEMIRGGSPVVYDKNKTSRFGVLPK 383 (590)
T ss_pred cCCCcEEEEEECCCCCEEeeEEeeCCCCccccceecc---CceEEEEccCceEcHHHHhhCCCceEECCCCCcEEEEEEC
Confidence 1 788999999999999 999999 2 899999999999
Q ss_pred CCCCCCceEEEecCCceeEeecceeecCC-CeEEEEecccCCccc-----------ccccc--ccCCcc-----E-----
Q 039955 282 CAKDSLQMRWFDVPGFNNIHAINEWDEED-GNVIILAPNILSIEQ-----------AFGKT--ELVPCL-----M----- 337 (420)
Q Consensus 282 ~~~~~~~v~wfe~p~~f~fH~~NA~Ee~d-g~IVvd~~~~~~~~~-----------~l~r~--dl~~~~-----l----- 337 (420)
++++.++++||++|+||+||++|||||++ ++||+|+|++.+++. .|.|| ++.++. +
T Consensus 384 ~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~~~~~ 463 (590)
T PLN02258 384 NATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIISGEQ 463 (590)
T ss_pred CCCCCCceEEEecCCcEEEecccccccCCCCeEEEEEecccChhhhcccccccccceEEEEEEECCCCceeeeEeecCCC
Confidence 98766789999999999999999999853 689999998776432 23343 222111 0
Q ss_pred ----------------------------------EEE-cccC-------------C----cCCCCCCC-CCCcEEEEEEE
Q 039955 338 ----------------------------------EKN-TRSG-------------G----VAANTEAD-EDNGYVVSYVH 364 (420)
Q Consensus 338 ----------------------------------~~~-l~tG-------------G----vPr~~~~~-EDDG~lls~v~ 364 (420)
.++ +.+| | |||+++.+ |||||||++||
T Consensus 464 ~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~EDDGylls~V~ 543 (590)
T PLN02258 464 VNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLSTGEVKKYIYGEGRYGGEPFFVPRGSGSEAEDDGYILAFVH 543 (590)
T ss_pred cccccceECHHHCCCccceEEEeccCCCCCCCeEEEEECCCCcEEEEECCCCccccCCEeccCCCCCcccCCcEEEEEEE
Confidence 001 2333 1 59998774 99999999999
Q ss_pred eCCCCceEEEEEeCCCCCCCeeEEEEcCCcCCCCCCcccccchhHhhh
Q 039955 365 DAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIELRKL 412 (420)
Q Consensus 365 d~~~~~S~l~VlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~~~l~~~ 412 (420)
|+++++|+|+||||++| ++||||+||+||||||||+|++++||++|
T Consensus 544 d~~~~~SeL~IlDA~~l--~~VArv~LP~rVP~GFHG~wv~~~~l~~q 589 (590)
T PLN02258 544 DEEKGKSELQVVNAVNL--ELEATVKLPSRVPYGFHGTFISAEDLLKQ 589 (590)
T ss_pred ECCCCceEEEEEeCCCC--cccEEEECCCCCCCcccccccCHHHHhhc
Confidence 99999999999999999 57999999999999999999999999988
No 2
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=1.1e-93 Score=759.23 Aligned_cols=349 Identities=33% Similarity=0.556 Sum_probs=297.0
Q ss_pred CCchhhHHHHHHHHHHHHHhHhhhccCCCCCCCCCcchhcccCCcCC-CcCCCCccceeeecCCCCCCC-----------
Q 039955 50 SSSSSARTMIVNTINNLFNNLMMRNSNYKLQPSLDPKRALSNNFAPV-DELPPTQCQVIQGSLPSCLDE----------- 117 (420)
Q Consensus 50 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~pl~~~~dp~~~l~g~fapv-~E~~~~~~~~V~G~IP~~L~G----------- 117 (420)
+..|+++++++|++|+.|.++ |++++||+++|+|||+|| +|.++..++.|+|+||+||+|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~ 92 (545)
T PLN02491 21 RPSKGLTSKAVDLLEKLIVKL--------MHDASQPLHYLSGNFAPVRDETPPVKDLPVRGHLPECLNGEFVRVGPNPKF 92 (545)
T ss_pred chhhhhhHHHHHHHHHHHHhh--------ccCCCCCcccccCCCcCccccCCcccCcEEEeeCCCcCCeEEEEeCCCCCC
Confidence 567889999999999999875 467899999999999999 888767789999999999999
Q ss_pred ----CCCccCCCCcEEEEEEeCCcEEEEEeecccHHHHHHHHcCCccccccccc----cc--------------ccccCC
Q 039955 118 ----PYHLFDGDAMLHCIRISQGQATFCSRCVKTYKYTIENTHELLSLQLVFSQ----AN--------------LISINN 175 (420)
Q Consensus 118 ----~~HwFDGDGMlha~~f~~G~v~Y~~RyV~T~~~~~E~~agr~~f~~~~~~----~g--------------~~~~~~ 175 (420)
++||||||||||+|+|+||+|+|+||||||++|++|+++|+++|++ ++. +| ..+...
T Consensus 93 ~~~~~~H~FDGDGMlha~~f~~G~a~y~~RfVrT~~~~~E~~ag~~~~~~-~~~~~g~~g~~~~~~~~~r~~~~~~~~~~ 171 (545)
T PLN02491 93 SPVAGYHWFDGDGMIHGMRIKDGKATYVSRYVKTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQQLRAKLKVLDFSY 171 (545)
T ss_pred CCCCCCccccCCccEEEEEEcCCcEEEEeeeecccchhhhhhcCcccccc-cccccccchhhhhhhhhhhcccccccccc
Confidence 5899999999999999999999999999999999999999999986 221 11 111122
Q ss_pred CCCccceEEEEeCCeEEEEeeCCccEEEccCCCCCCcccccccccCCcCCCCCCcccccccCCCC----cee--------
Q 039955 176 GFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFDVKSGMNMTAHPKKRPCNR----RNV-------- 243 (420)
Q Consensus 176 ~~~~ANT~v~~~~grLlAl~E~~~Py~id~~~~~d~TLeTlG~~d~~g~l~~~ftAHPK~DP~tG----y~v-------- 243 (420)
++|+|||||++|+||||||||+|+||++++.. .+ ||||+|++||+|+|..+||||||+||.|| |++
T Consensus 172 ~~~~ANT~vi~~~grLlAl~E~g~Py~l~~~D-p~-tLeT~G~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~~~p~~~ 249 (545)
T PLN02491 172 GNGTGNTALIYHHGKLLALSEADKPYVVKVLE-DG-DLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYIT 249 (545)
T ss_pred CCCCCceeEEEECCEEEEEEcCCCCeEecCCC-CC-CcceeeecccCCccCcccccCccCcCCCCCEEEEEecCCCCcEE
Confidence 46899999999999999999999999998622 23 79999999999999989999999999999 221
Q ss_pred ---E-----------EeCCCcceeeeeeeeecccceEEe--------------c--------CCCCeEEEEEeCCCCCCC
Q 039955 244 ---C-----------FPLWSNTSVCDTLLLRCKRLFAAF--------------G--------STKASRIGVIPRCAKDSL 287 (420)
Q Consensus 244 ---~-----------i~l~~p~~iHDfaiT~~~eny~V~--------------G--------~~~~tr~gVipR~~~~~~ 287 (420)
+ |+++.++|||||||| |||+|| | +++++|||||||++++.+
T Consensus 250 y~~~~~~G~~~~~v~i~l~~~~~~HDFaiT---eny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~ 326 (545)
T PLN02491 250 YRVISKDGAMHDPVPITISEPIMMHDFAIT---ENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDEL 326 (545)
T ss_pred EEEECCCCcCcceeEeecCCCceeeeeEec---CCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCC
Confidence 1 789999999999999 999999 1 899999999999987667
Q ss_pred ceEEEecCCceeEeecceeecCCCeEEEEecccCCcc----------------cccccc--ccCCcc-------------
Q 039955 288 QMRWFDVPGFNNIHAINEWDEEDGNVIILAPNILSIE----------------QAFGKT--ELVPCL------------- 336 (420)
Q Consensus 288 ~v~wfe~p~~f~fH~~NA~Ee~dg~IVvd~~~~~~~~----------------~~l~r~--dl~~~~------------- 336 (420)
.|+||++|+||+||++|||||+ |+||+|+|++.+++ +.+.|| ++.++.
T Consensus 327 ~irw~e~~~~f~fH~~NA~Ee~-~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tg~~~~~~l~~~~~Ef 405 (545)
T PLN02491 327 MIRWFELPNCFIFHNANAWEEE-DEVVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTGAASQKKLSASAVDF 405 (545)
T ss_pred ceEEEEcCCceEeecCCccccC-CeEEEEEeccCCCccccccccccccccccCceEEEEEEECCCCceeeeccCCccccc
Confidence 8999999999999999999987 59999999986532 112233 222110
Q ss_pred ----------------------------EEEE-ccc---------------------C-----C----cCCCCC--CCCC
Q 039955 337 ----------------------------MEKN-TRS---------------------G-----G----VAANTE--ADED 355 (420)
Q Consensus 337 ----------------------------l~~~-l~t---------------------G-----G----vPr~~~--~~ED 355 (420)
+.++ +.+ | | |||+++ .+||
T Consensus 406 P~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~ED 485 (545)
T PLN02491 406 PRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEED 485 (545)
T ss_pred CccCHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCCCcccC
Confidence 1111 332 1 1 599753 5899
Q ss_pred CcEEEEEEEeCCCCceEEEEEeCCCCCCCeeEEEEcCCcCCCCCCcccccchhHhhhh
Q 039955 356 NGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIELRKLY 413 (420)
Q Consensus 356 DG~lls~v~d~~~~~S~l~VlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~~~l~~~~ 413 (420)
|||||++|||+++++|+|+||||++|+++|||||+||+||||||||+|++++||++|.
T Consensus 486 DG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~~~l~~~~ 543 (545)
T PLN02491 486 DGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQEQA 543 (545)
T ss_pred CcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCccccCcCHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999984
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.5e-83 Score=649.95 Aligned_cols=312 Identities=29% Similarity=0.427 Sum_probs=269.9
Q ss_pred chhcccCCcCC-CcCCCCccceeeecCCCCCCC----------------CCCccCCCCcEEEEEEeCC-cEEEEEeeccc
Q 039955 86 KRALSNNFAPV-DELPPTQCQVIQGSLPSCLDE----------------PYHLFDGDAMLHCIRISQG-QATFCSRCVKT 147 (420)
Q Consensus 86 ~~~l~g~fapv-~E~~~~~~~~V~G~IP~~L~G----------------~~HwFDGDGMlha~~f~~G-~v~Y~~RyV~T 147 (420)
+.+|+|+|+|+ .|.+.+.+..|+|+||++|+| .+||||||||||+|.|.|| +|+|+||||||
T Consensus 19 ~~~w~g~~a~~~~E~~~t~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~gg~a~yrnrfVrT 98 (490)
T COG3670 19 NPYWTGGFAPVRTEFDATDLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDGGRATYRNRFVRT 98 (490)
T ss_pred chhhhccCCccceeecccccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEecCCCceEEEEEEEee
Confidence 34679999999 888877777799999999999 7899999999999999995 99999999999
Q ss_pred HHHHHHHHcCCcccccccccc--cccc-c--CCCCCccceEEEEeCCeEEEEeeCCccEEEccCCCCCCcccccccccCC
Q 039955 148 YKYTIENTHELLSLQLVFSQA--NLIS-I--NNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFD 222 (420)
Q Consensus 148 ~~~~~E~~agr~~f~~~~~~~--g~~~-~--~~~~~~ANT~v~~~~grLlAl~E~~~Py~id~~~~~d~TLeTlG~~d~~ 222 (420)
.+|.+|++||+++++++++.. +..- . ...+|.|||||++|+++|+||||+|.||+|||+ ||+|+|..+|+
T Consensus 99 ~g~~ae~~Ag~~l~~g~~~~~p~~~~~~~~~~~lkn~aNTsVi~~~~~LlalwEgG~pyrLdp~-----tL~TlG~~~~~ 173 (490)
T COG3670 99 QGYLAENEAGKPLWGGLGETQPPGVRPHSRTGDLKNAANTSVIMHGDELLALWEGGSPYRLDPD-----TLETLGKEDFG 173 (490)
T ss_pred ceeehhhhcCcceeccccccCCCCcCcCccccccccCCccceEeehhHHHHHHhcCCccccChh-----HhhhcChhhcC
Confidence 999999999999999987652 2111 1 235899999999999999999999999999997 89999999999
Q ss_pred c-CCCCCCcccccccCCCC----cee-----------E-----------EeCCCcceeeeeeeeecccceEEe-------
Q 039955 223 V-KSGMNMTAHPKKRPCNR----RNV-----------C-----------FPLWSNTSVCDTLLLRCKRLFAAF------- 268 (420)
Q Consensus 223 g-~l~~~ftAHPK~DP~tG----y~v-----------~-----------i~l~~p~~iHDfaiT~~~eny~V~------- 268 (420)
| .+.++||||||+||.|| ||+ + |++|++.|||||+|| +||+||
T Consensus 174 g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~~v~~~G~l~r~~~i~lpg~~~~HDFa~T---~~y~If~~~Pv~~ 250 (490)
T COG3670 174 GDPLGGPFSAHPKVDPDTGELFNFGYSFALPYLTYYVVDADGELRRTVDIPLPGPPMMHDFAIT---ENYLIFFDLPVTF 250 (490)
T ss_pred CCCCCCccccCccCCCCCceEEEEEeccCCCeeEEEEECCCCcEEEeeeeecCCCccceeeeec---CceEEEEeCcccc
Confidence 9 55678999999999999 332 1 799999999999999 999999
Q ss_pred -------c-----------CCCCeEEEEEeCCCCCCCceEEEecCCceeEeecceeecCCCeEEEEecccCCcc------
Q 039955 269 -------G-----------STKASRIGVIPRCAKDSLQMRWFDVPGFNNIHAINEWDEEDGNVIILAPNILSIE------ 324 (420)
Q Consensus 269 -------G-----------~~~~tr~gVipR~~~~~~~v~wfe~p~~f~fH~~NA~Ee~dg~IVvd~~~~~~~~------ 324 (420)
| |+.++||+||||.+ + ++|||||+++||+||+.||||++|+.|.+|.+++.+..
T Consensus 251 d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g-~-~~irwfE~~p~fvfH~~NAye~~d~~v~~d~~~~~~~~~~~~~~ 328 (490)
T COG3670 251 DPVPRLLGRPADGHAMRWRPELPTRILVLPREG-D-SEIRWFEAEPGFVFHFLNAYEEGDEVVLVDFLRYDDFSQTLDTL 328 (490)
T ss_pred cchhHHhcCcccccceeecCCCCcEEEEEccCC-C-CceeEEecCCeEEEEecceeecCCCcEEEEEEeecccccccccc
Confidence 1 99999999999997 3 78999999999999999999999878888988877531
Q ss_pred -------------cccccc--ccCCcc---------------------------------------------EEEE-ccc
Q 039955 325 -------------QAFGKT--ELVPCL---------------------------------------------MEKN-TRS 343 (420)
Q Consensus 325 -------------~~l~r~--dl~~~~---------------------------------------------l~~~-l~t 343 (420)
..|.|+ ++.++. |.++ ++|
T Consensus 329 ~~~~~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l~~g~~~l~k~D~~t 408 (490)
T COG3670 329 GEGPGGDFRTLAPPRLHRWTLNLKTGKVAEEQLDDRACEFPRINPRYVGQPYRYTYMSGARPGTFLFQGLQTLAKHDLET 408 (490)
T ss_pred cccccccccccCCCcceEEEEccccchhHHHhhhhhhcccCccChhhcCCceEEEEEecccCCccchhhcceeEEEeccC
Confidence 234444 222110 1111 445
Q ss_pred C-------C----------cCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCCCeeEEEEcCCcCCCCCCcccccc
Q 039955 344 G-------G----------VAANTEADEDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVRE 406 (420)
Q Consensus 344 G-------G----------vPr~~~~~EDDG~lls~v~d~~~~~S~l~VlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~ 406 (420)
| | ||||+++.|||||||++|+|.+.++|+|+|+||++++++||||+.||++|||||||+|++.
T Consensus 409 g~~~~~~~g~~~y~~E~vfvPrpg~~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epIa~l~Lp~~vP~gfHG~w~~~ 488 (490)
T COG3670 409 GTSQVYSFGPRGYGSEPVFVPRPGSSAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPIARLALPQRVPYGFHGNWVPT 488 (490)
T ss_pred CcEEEEecCCCCcccccccccCCCCCcCCCcEEEEEEEecCCCcceEEEEecccCCCCcceEEecccccccccccccccc
Confidence 5 1 4999999999999999999999999999999999999999999999999999999999987
Q ss_pred h
Q 039955 407 I 407 (420)
Q Consensus 407 ~ 407 (420)
+
T Consensus 489 ~ 489 (490)
T COG3670 489 E 489 (490)
T ss_pred c
Confidence 5
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=1.1e-77 Score=629.59 Aligned_cols=308 Identities=33% Similarity=0.495 Sum_probs=221.6
Q ss_pred ccCCcCC-CcCCCCccceeeecCCCCCCC-----------------CCCccCCCCcEEEEEEeCCcEEEEEeecccHHHH
Q 039955 90 SNNFAPV-DELPPTQCQVIQGSLPSCLDE-----------------PYHLFDGDAMLHCIRISQGQATFCSRCVKTYKYT 151 (420)
Q Consensus 90 ~g~fapv-~E~~~~~~~~V~G~IP~~L~G-----------------~~HwFDGDGMlha~~f~~G~v~Y~~RyV~T~~~~ 151 (420)
+|+|+|+ +|......+.|+|+||+||+| ++||||||||||+|+|++|+|+|+||||+|++|+
T Consensus 1 ~g~f~~~~~E~~~~~~~~v~G~iP~~L~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~~g~v~y~~R~v~T~~~~ 80 (486)
T PF03055_consen 1 SGGFAPVTEEVPDPEDLEVEGEIPSWLDGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFDDGRVTYRNRFVRTEGYK 80 (486)
T ss_dssp SGCGS---SEE-EEEC-EEEE---TT-EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEETTEEEEEEEE---HHHH
T ss_pred CCCCCCCccccCCccccEEeeeCCCcCCCeeEEEcCcccccCCCcccccccCCCCEEEEEEECCCCceeEEEEeCcHHHH
Confidence 5899999 777556678999999999998 6799999999999999999999999999999999
Q ss_pred HHHHcCCcccccccccc-------cc------cccCCCCCccceEEEEeCCeEEEEeeCCccEEEccCCCCCCccccccc
Q 039955 152 IENTHELLSLQLVFSQA-------NL------ISINNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGR 218 (420)
Q Consensus 152 ~E~~agr~~f~~~~~~~-------g~------~~~~~~~~~ANT~v~~~~grLlAl~E~~~Py~id~~~~~d~TLeTlG~ 218 (420)
+|+++|+.+|++.+++. ++ ......+|+|||||++|+||||||||+|.||+||+. ||||+|.
T Consensus 81 ~e~~~g~~~~~g~~gt~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~p~~lDp~-----TLeT~g~ 155 (486)
T PF03055_consen 81 AEREAGRRLYRGEFGTVPLPDPCRNIFRFPMPFFRGKPKNNANTNVIPHGGRLLALWEGGPPYELDPD-----TLETLGP 155 (486)
T ss_dssp HHHHHTSS-SC-TTTCTTCSTHHHHTCHHTTS--GGGB-----SEEEEETTEEEEE-TTSEEEEEETT-----TCEEEEE
T ss_pred HHHhcCCceecccccccccCchhhhhhhhccccccccCCCCceeeeEEECCEEEEEEcCCCCEEechh-----HhhhcCc
Confidence 99999999998866542 11 111235899999999999999999999999999987 8999999
Q ss_pred ccCCcCCC-CCCcccccccCCCC----cee---------E-----------------EeCCCcceeeeeeeeecccceEE
Q 039955 219 HDFDVKSG-MNMTAHPKKRPCNR----RNV---------C-----------------FPLWSNTSVCDTLLLRCKRLFAA 267 (420)
Q Consensus 219 ~d~~g~l~-~~ftAHPK~DP~tG----y~v---------~-----------------i~l~~p~~iHDfaiT~~~eny~V 267 (420)
+||++.|. ..||||||+||.|| |++ + ++++.++|||||+|| |||+|
T Consensus 156 ~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iHdf~vT---~~Y~V 232 (486)
T PF03055_consen 156 FDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGKKIHRVPSFPLPRPSYIHDFAVT---ENYVV 232 (486)
T ss_dssp EEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSEEEEEEEESCCCS-B-----EE----SSEEE
T ss_pred ccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCccceeEEeeeccCCCCccccccccc---CceEE
Confidence 99999999 67999999999999 221 0 378899999999999 99999
Q ss_pred e--------------c----------CCCCeEEEEEeCCCCCCCceEEEecCCceeEeecceeecCCC--eEEEEecccC
Q 039955 268 F--------------G----------STKASRIGVIPRCAKDSLQMRWFDVPGFNNIHAINEWDEEDG--NVIILAPNIL 321 (420)
Q Consensus 268 ~--------------G----------~~~~tr~gVipR~~~~~~~v~wfe~p~~f~fH~~NA~Ee~dg--~IVvd~~~~~ 321 (420)
| | +++++||+||||++++ +.++||++++||+||++||||++|| +||+|+|++.
T Consensus 233 ~~~~P~~~~~~~~~~g~~~~~~~~~~p~~~t~~~VipR~~~~-~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv~d~~~~~ 311 (486)
T PF03055_consen 233 FPDNPLRFDPERLLLGGSPIDCLKWDPERPTRFHVIPRDGGK-SPVRWFEAPPFFVFHFVNAYEDDDGGGEIVLDACRYD 311 (486)
T ss_dssp EEE-SEEE-HHHHHTTCCTGGCEEE-TTS-EEEEEEETTTSC-CCEEEEEETTCEEEEEEEEEEETTT-TEEEEEEEEEC
T ss_pred EEECCeEECHHHHhhCCcccceEEECCCCCeEEEEEECcCCC-ceeEEEecCChhhccccceeecCCCceEEEEEEeecC
Confidence 9 2 8999999999999743 6899999999999999999999874 9999999876
Q ss_pred Ccc----------------------cccccc--ccC--CccE----------EE--------------------------
Q 039955 322 SIE----------------------QAFGKT--ELV--PCLM----------EK-------------------------- 339 (420)
Q Consensus 322 ~~~----------------------~~l~r~--dl~--~~~l----------~~-------------------------- 339 (420)
+.. ..+.|| ++. ++.+ .+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~~~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~ 391 (486)
T PF03055_consen 312 DPEFLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGRVSEEPLDDGNPCEFPRINPRYSGRPYRYVYAVGMDPERS 391 (486)
T ss_dssp SSS-CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCEEEEEEEETTEEEEEEEE-GGGTTS--SEEEEEEECSCTS
T ss_pred CcccccccchhcccccccccccCCCceEEEEEEccccccceeEHhHhccCCCcccceeCcccCCCcccEEEEEeecccCC
Confidence 532 123344 333 2111 00
Q ss_pred ----------E-cccC-------------C----cCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCCCeeEEEEc
Q 039955 340 ----------N-TRSG-------------G----VAANTEADEDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKS 391 (420)
Q Consensus 340 ----------~-l~tG-------------G----vPr~~~~~EDDG~lls~v~d~~~~~S~l~VlDA~~~~~~pVArv~L 391 (420)
+ +.|| | |||+++.+|||||||++|+|.++++|+|+||||++|+.+||||++|
T Consensus 392 ~~~~~~~l~k~D~~tg~~~~~~~~~~~~~~EpvFVPr~~~~~EdDG~Ll~~v~~~~~~~s~l~VlDA~~l~~GPvAr~~l 471 (486)
T PF03055_consen 392 PGFPFNGLVKVDLETGEVQRWSFGPGCFPGEPVFVPRPGGAEEDDGYLLSVVYDSDTNRSELLVLDAKDLEEGPVARVEL 471 (486)
T ss_dssp ---EEEEEEEEETTTTEEEEEE-TTTEEE--EEEEE-TTS-STT-EEEEEEEEETTTTCEEEEEEETTTTCE--EEEEEE
T ss_pred cCcCCCEEEEEecccccceEEECCCCceecceEeccCCCCCCCCceEEEEEEEECCCCccEEEEEeCCCCCcCceEEEEC
Confidence 0 2222 1 5999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCcccccc
Q 039955 392 TQSVPTGSHGLFVRE 406 (420)
Q Consensus 392 P~rVP~GFHG~fv~~ 406 (420)
|++||+||||+|+++
T Consensus 472 P~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 472 PHRVPYGFHGSWVPE 486 (486)
T ss_dssp SS---S-SEEEEEE-
T ss_pred CCCCCCCccccccCC
Confidence 999999999999974
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=5.5e-73 Score=608.22 Aligned_cols=312 Identities=23% Similarity=0.334 Sum_probs=247.9
Q ss_pred hhcccCCcCC-CcC-CCCccceeeecCCCCC-CC----------------CCCccCCCCcEEEEEEeCC--cEEEEEeec
Q 039955 87 RALSNNFAPV-DEL-PPTQCQVIQGSLPSCL-DE----------------PYHLFDGDAMLHCIRISQG--QATFCSRCV 145 (420)
Q Consensus 87 ~~l~g~fapv-~E~-~~~~~~~V~G~IP~~L-~G----------------~~HwFDGDGMlha~~f~~G--~v~Y~~RyV 145 (420)
+.|+++|+|+ +|. .+..+.+|+|+||+|| +| ++||||||||||+|+|++| +|+|+||||
T Consensus 58 ~~~~~~f~~~~~E~~~~~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~~G~~~v~y~nRfV 137 (610)
T PLN02969 58 WDYQFLFVSQRSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDGGDRPVQYSARYV 137 (610)
T ss_pred HHhhhhhcCChhhcCCccccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEcCCCeEEEEEeeee
Confidence 5689999999 777 4565557999999999 98 4799999999999999998 599999999
Q ss_pred ccHHHHHHHHcCCcccc----cccccc--c--ccccCCCCCccceEEEEeCCeEEEEeeCCccEEEccCCCCCCcccccc
Q 039955 146 KTYKYTIENTHELLSLQ----LVFSQA--N--LISINNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLG 217 (420)
Q Consensus 146 ~T~~~~~E~~agr~~f~----~~~~~~--g--~~~~~~~~~~ANT~v~~~~grLlAl~E~~~Py~id~~~~~d~TLeTlG 217 (420)
||++|++|+++|+.++. +.++.. + ..+....+|+|||||++|+||||||||++.||+||++ ||||+|
T Consensus 138 rT~~~~~E~~ag~~~~~~~~~~pfs~~~~~~~~~~~~~~kn~ANT~V~~~gg~LlAl~E~g~P~~lDP~-----TLeT~G 212 (610)
T PLN02969 138 KTEAKKEEHDPETRTWRFTYRGPFSVLKGGKRVGNVKVMKNVANTSVLKWGGRLLCLWEGGEPYEIDSG-----TLETIG 212 (610)
T ss_pred ccHHHHHHHHhCCcceeeeeccchhcccCCCCcccccccccCCCcceeeeCCEEEEecCCCCCeEcCcC-----ccceee
Confidence 99999999999987654 222221 0 0111124799999999999999999999999999987 899999
Q ss_pred cccC-----------------------------CcCCC---CCCcccccccCCCC----cee----------------E-
Q 039955 218 RHDF-----------------------------DVKSG---MNMTAHPKKRPCNR----RNV----------------C- 244 (420)
Q Consensus 218 ~~d~-----------------------------~g~l~---~~ftAHPK~DP~tG----y~v----------------~- 244 (420)
++|| .|.++ ..||||||+||.|| |++ +
T Consensus 213 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~~~~~y~~d 292 (610)
T PLN02969 213 RFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSNFTFYEFD 292 (610)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCCCceeEEEEEC
Confidence 9999 44443 36999999999999 331 0
Q ss_pred ----------EeCCCcceeeeeeeeecccceEEe-----------------c-----------CCCCe-EEEEEeCCCCC
Q 039955 245 ----------FPLWSNTSVCDTLLLRCKRLFAAF-----------------G-----------STKAS-RIGVIPRCAKD 285 (420)
Q Consensus 245 ----------i~l~~p~~iHDfaiT~~~eny~V~-----------------G-----------~~~~t-r~gVipR~~~~ 285 (420)
|++|.++|||||||| |||+|| | +++++ ||+||||++++
T Consensus 293 ~~G~~~~~~~~~~p~~~~iHDfaiT---eny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~~VipR~~~~ 369 (610)
T PLN02969 293 ADFKLVQRKEFKLDDHLMIHDWAFT---DTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPVYLLPRFPEK 369 (610)
T ss_pred CCCCEecceeecCCCcceeeeeecc---CCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEEEEEECcCCC
Confidence 678889999999999 999999 2 78895 89999999754
Q ss_pred C-CceEE---EecC-CceeEeecceeecCC--C--eEEEEecc--cCCcc----------------------------cc
Q 039955 286 S-LQMRW---FDVP-GFNNIHAINEWDEED--G--NVIILAPN--ILSIE----------------------------QA 326 (420)
Q Consensus 286 ~-~~v~w---fe~p-~~f~fH~~NA~Ee~d--g--~IVvd~~~--~~~~~----------------------------~~ 326 (420)
. ..++| |++| +||+||++|||||++ | +||||+|+ +.+.. ..
T Consensus 370 ~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (610)
T PLN02969 370 EAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASACSYQWFSFHRMFGYDWQNKKLDPSVMNNAKGKELLPH 449 (610)
T ss_pred cccceeeeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEeccccccccccccccccccccccCcchhcccCcccccce
Confidence 2 67999 9998 599999999999742 4 59999863 32210 12
Q ss_pred cccc--ccC-Cc--------cEE---------------------EE-------------------------cccC-----
Q 039955 327 FGKT--ELV-PC--------LME---------------------KN-------------------------TRSG----- 344 (420)
Q Consensus 327 l~r~--dl~-~~--------~l~---------------------~~-------------------------l~tG----- 344 (420)
+.|| ++. .+ .+. ++ +.+|
T Consensus 450 l~r~~idl~~~g~~~~~~~~~l~~~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~K~D~~tg~~~~w 529 (610)
T PLN02969 450 LVQVSIDLDRTGDCRSCDVEPLSNQWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVVKLDVPDGSARSW 529 (610)
T ss_pred EEEEEEeCCcCCccccccceeeccccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEEEEECCCCCEEEE
Confidence 2233 321 11 110 00 1222
Q ss_pred --------C----cCC---CCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCCC--eeEEEEcCCcC--CCCCCccccc
Q 039955 345 --------G----VAA---NTEADEDNGYVVSYVHDAKTGESKFLVTDAKSPHLD--IEAVVKSTQSV--PTGSHGLFVR 405 (420)
Q Consensus 345 --------G----vPr---~~~~~EDDG~lls~v~d~~~~~S~l~VlDA~~~~~~--pVArv~LP~rV--P~GFHG~fv~ 405 (420)
| ||| |++.+|||||||++|+|.++++|+|+||||++|+.+ ||||++||+|| |+||||+|++
T Consensus 530 ~~g~~~~~~EPvFVPr~~~p~~~~EDDG~Ll~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP~~v~~P~GfHG~w~~ 609 (610)
T PLN02969 530 STGARRFVGEPVFVPRKSSQGGGEEDDGYVLVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKHLTFPMGFHGFWAD 609 (610)
T ss_pred EeCCCCcccCCEEecCCCCCCCCccCCcEEEEEEEECCCCceEEEEEeCCCCcccCceeEEEECCcccCCCccccccccC
Confidence 1 488 468889999999999999999999999999999875 99999999998 9999999986
Q ss_pred c
Q 039955 406 E 406 (420)
Q Consensus 406 ~ 406 (420)
+
T Consensus 610 ~ 610 (610)
T PLN02969 610 E 610 (610)
T ss_pred C
Confidence 3
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-51 Score=436.69 Aligned_cols=352 Identities=27% Similarity=0.395 Sum_probs=289.1
Q ss_pred CCchhhHHHHHHHHHHHHHhHhhhccCCCCCCCCCcchhcccCCcCCCcCCCCccceeeecCCCCCCC------------
Q 039955 50 SSSSSARTMIVNTINNLFNNLMMRNSNYKLQPSLDPKRALSNNFAPVDELPPTQCQVIQGSLPSCLDE------------ 117 (420)
Q Consensus 50 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~pl~~~~dp~~~l~g~fapv~E~~~~~~~~V~G~IP~~L~G------------ 117 (420)
++.+..+..++|...-+..+++ +..|++++.+|.+++.++|+|+.|.++...+.++|.+|.+++|
T Consensus 72 ~~~~~~~~~~~dg~~~~~~~~~---~s~~y~~~~~p~r~v~~~f~~~~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~ 148 (582)
T KOG1285|consen 72 GPALLHAFHFLDGRVYYSSRYL---ESDPYKKTVDPNRIVSGEFAPVAEFPDPCKNIFSGFFPEFRNGESIRDNANPNFT 148 (582)
T ss_pred chhhhhheeecCCeEEEEeeec---ccCCcccccccceeeeccccccCCCCCccCcceeeeeeecccccccccCCCccee
Confidence 3445556666666633333333 3678899999999999999999999988889999999999988
Q ss_pred ---CCCccCCCCcEEEEEEeCC--cEEEEEeecccHHHHHHHHcCCccccccccc-c-----------------cccccC
Q 039955 118 ---PYHLFDGDAMLHCIRISQG--QATFCSRCVKTYKYTIENTHELLSLQLVFSQ-A-----------------NLISIN 174 (420)
Q Consensus 118 ---~~HwFDGDGMlha~~f~~G--~v~Y~~RyV~T~~~~~E~~agr~~f~~~~~~-~-----------------g~~~~~ 174 (420)
++||||||||+|+++|+.| +++|++||.+| |.+|...|+..+....|+ . ++.++.
T Consensus 149 pv~g~~~~~gtet~~~~ki~~~tl~t~~~~~~~k~--~v~~~~~gah~~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~p~ 226 (582)
T KOG1285|consen 149 PVGGHHLYAGTETPHAVKIDPGTLETTYKVRFTKT--LVQEHTAGAHPHPDEIGTVYGHFGIARFGLFFARALTVLKNPA 226 (582)
T ss_pred ecCCCeeEecCCCceeEEecCcccceeEeeccccc--eeeeeecccCCcccCcccEEeeechhhccccccceeEEEecCC
Confidence 7899999999999999999 89999999999 999999998766654443 1 122334
Q ss_pred CCCCccceEEEEeCCeEEEEeeCCccEEEccCCCCCCcccc-cccccCCcCCCCCCcccccccCCCC------ceeE---
Q 039955 175 NGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKT-LGRHDFDVKSGMNMTAHPKKRPCNR------RNVC--- 244 (420)
Q Consensus 175 ~~~~~ANT~v~~~~grLlAl~E~~~Py~id~~~~~d~TLeT-lG~~d~~g~l~~~ftAHPK~DP~tG------y~v~--- 244 (420)
.+.+.+|+.++++.++++|+.|+++||.+-+...|+ +|| ||+++|++++...+.||||+||.|| |.++
T Consensus 227 ~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~--tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~ 304 (582)
T KOG1285|consen 227 NGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGD--TENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKP 304 (582)
T ss_pred CccccccccceEeecceeeeccCCCccceEEeecCC--ccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCC
Confidence 567889999999999999999999999999998898 999 9999999999999999999999999 4432
Q ss_pred ------------------EeCCCcceeeeeeeeecccceEEe--------------c-------CCCCeEEEEEeCCCCC
Q 039955 245 ------------------FPLWSNTSVCDTLLLRCKRLFAAF--------------G-------STKASRIGVIPRCAKD 285 (420)
Q Consensus 245 ------------------i~l~~p~~iHDfaiT~~~eny~V~--------------G-------~~~~tr~gVipR~~~~ 285 (420)
+....|+|+||||+| ||++|+ + ..+..||++++++..+
T Consensus 305 ~l~~~~~~~~~~k~~~~~~~~~~~t~hh~na~e---edg~vi~D~~~~~~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d 381 (582)
T KOG1285|consen 305 YLIYHKFSKEGGKSVPVEIFPSFPTFHHDNAFE---EDGCVVPDLCVYFDLSEMIRDTSPLLYDNGKTLRFGLLSKTAPD 381 (582)
T ss_pred cEEEEEeccccCccCcceeccCcceEEEeeeec---ccCceEEEEEEEechhhhhcccceeecccccccccccccccCCc
Confidence 334478999999999 999998 1 6788999999999999
Q ss_pred CCceEEEecCCceeEeecceeecCC-C-eEEEEecccCCcccccc-------------ccccCC----------------
Q 039955 286 SLQMRWFDVPGFNNIHAINEWDEED-G-NVIILAPNILSIEQAFG-------------KTELVP---------------- 334 (420)
Q Consensus 286 ~~~v~wfe~p~~f~fH~~NA~Ee~d-g-~IVvd~~~~~~~~~~l~-------------r~dl~~---------------- 334 (420)
.++++|.+.+++|+||++|+||+.. + +++|...++.+....+. |.++..
T Consensus 382 ~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~i~~~~de~~~~~l~e~r~~~~tg~~~~~~~~~~~nl~~ 461 (582)
T KOG1285|consen 382 ARRIVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTSTIFRESDELLGNRLEEIRLNLKTGLEFPRPVIPKINLDF 461 (582)
T ss_pred ccceEEEeccccccccchhhhcccCCCceEEeecccCCccchhhcccccchhceeeeeeecccccccccceeeccccccc
Confidence 9999999999999999999999743 2 67787777755332111 000000
Q ss_pred --------c------------------cEEEE-cccC-------------C----cCCCCCCCCCCcEEEEEEEeCCCCc
Q 039955 335 --------C------------------LMEKN-TRSG-------------G----VAANTEADEDNGYVVSYVHDAKTGE 370 (420)
Q Consensus 335 --------~------------------~l~~~-l~tG-------------G----vPr~~~~~EDDG~lls~v~d~~~~~ 370 (420)
+ .+.++ +.+| | ||+|++.+|||||||++|||+++++
T Consensus 462 ~~in~~~~Gkk~ryvY~ai~~~~p~~~g~vKvDl~~g~~~~w~~~~~~~~GEP~FVP~p~~~eEDdG~Iv~~v~~~~~~~ 541 (582)
T KOG1285|consen 462 GMINRSYLGKKYRYVYGAILDPWPKVSGIVKVDLVTGEVKKWREGGGRPGGEPIFVPRPGTLEEDDGYIVSVVHDESKEK 541 (582)
T ss_pred ccccceeecccceEEEEEecCCccCCCeEEEEEecCCceeeEecCCCccCCCceEecCCCCcccCCcEEEEEEEcCCCCc
Confidence 0 01111 3333 3 5999899999999999999999999
Q ss_pred eEEEEEeCCCCCCCeeEEEEcCCcCCCCCCcccccchhHhhhh
Q 039955 371 SKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIELRKLY 413 (420)
Q Consensus 371 S~l~VlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~~~l~~~~ 413 (420)
|+|+||||++| +++||++||.||||||||+|++..+|++|.
T Consensus 542 s~l~ildAK~l--~~~ar~~vp~rvP~gfHG~f~~~~~~~~~~ 582 (582)
T KOG1285|consen 542 SFLLILDAKTL--EEVARVEVPTRVPYGFHGTFVSTTDLATQS 582 (582)
T ss_pred ccEEEEecccc--ceeeEEecCCCCCCccceeEeccccccccC
Confidence 99999999997 899999999999999999999999998873
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=4.4e-23 Score=219.47 Aligned_cols=209 Identities=20% Similarity=0.206 Sum_probs=170.1
Q ss_pred ceeeecCCCCCCC----------------CCCccCCCCcEEEEEEeCCcEEEEEeecccHHHHHHHHcCCcccccccccc
Q 039955 105 QVIQGSLPSCLDE----------------PYHLFDGDAMLHCIRISQGQATFCSRCVKTYKYTIENTHELLSLQLVFSQA 168 (420)
Q Consensus 105 ~~V~G~IP~~L~G----------------~~HwFDGDGMlha~~f~~G~v~Y~~RyV~T~~~~~E~~agr~~f~~~~~~~ 168 (420)
..+.|.||.||+| ++|||||-+++|++.|.||++.|++||++|+.|+......|.+..+++...
T Consensus 37 ~~~~g~ip~wL~g~~lrn~pg~~~~g~~~~~h~fd~~~~~~~~~~~dg~~~~~~~~~~s~~y~~~~~p~r~v~~~f~~~~ 116 (582)
T KOG1285|consen 37 CTVKGSIPKWLDGTLLRNGPGLFTVGEEKYNHLFDGPALLHAFHFLDGRVYYSSRYLESDPYKKTVDPNRIVSGEFAPVA 116 (582)
T ss_pred cccccccCccccccccCCCCcccccCcccccccccchhhhhheeecCCeEEEEeeecccCCcccccccceeeeccccccC
Confidence 5689999999999 789999999999999999999999999999999998888888776654432
Q ss_pred cc-------c--------ccCCCCCccceEEEEe-CCeEEEEeeCCccEEEccCCCCCCcccccccccCCcCC-C-CCCc
Q 039955 169 NL-------I--------SINNGFGLANASLSFL-GDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFDVKS-G-MNMT 230 (420)
Q Consensus 169 g~-------~--------~~~~~~~~ANT~v~~~-~grLlAl~E~~~Py~id~~~~~d~TLeTlG~~d~~g~l-~-~~ft 230 (420)
+. + +.....++||.++... ++++||.+|.-..++||+. ||+|+..++|.+.+ . ..++
T Consensus 117 ~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g~~~~~gtet~~~~ki~~~-----tl~t~~~~~~~k~~v~~~~~g 191 (582)
T KOG1285|consen 117 EFPDPCKNIFSGFFPEFRNGESIRDNANPNFTPVGGHHLYAGTETPHAVKIDPG-----TLETTYKVRFTKTLVQEHTAG 191 (582)
T ss_pred CCCCccCcceeeeeeecccccccccCCCcceeecCCCeeEecCCCceeEEecCc-----ccceeEeeccccceeeeeecc
Confidence 11 1 1223578999999999 8899999999888888876 89999999999943 3 3589
Q ss_pred ccccccCCCC-cee----------------E---------------------E-----eCCCcceeeeeeeeecccceEE
Q 039955 231 AHPKKRPCNR-RNV----------------C---------------------F-----PLWSNTSVCDTLLLRCKRLFAA 267 (420)
Q Consensus 231 AHPK~DP~tG-y~v----------------~---------------------i-----~l~~p~~iHDfaiT~~~eny~V 267 (420)
|||+.|+... ||. + + .++.|.|||+||.| |||+|
T Consensus 192 ah~~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~t---enyi~ 268 (582)
T KOG1285|consen 192 AHPHPDEIGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDT---ENYIG 268 (582)
T ss_pred cCCcccCcccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccCCCccceEEeecCCc---cceEe
Confidence 9999999743 331 0 1 46789999999999 99999
Q ss_pred e---------------------c----------CCCCeEEEEEeCCCCCCCceEEEecCCceeEeecceeecCCCeEEEE
Q 039955 268 F---------------------G----------STKASRIGVIPRCAKDSLQMRWFDVPGFNNIHAINEWDEEDGNVIIL 316 (420)
Q Consensus 268 ~---------------------G----------~~~~tr~gVipR~~~~~~~v~wfe~p~~f~fH~~NA~Ee~dg~IVvd 316 (420)
+ | ++...++.++.+.++...++. ..++++.||++|||||+ +.||+|
T Consensus 269 ~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~--~~~~~~t~hh~na~eed-g~vi~D 345 (582)
T KOG1285|consen 269 RFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVE--IFPSFPTFHHDNAFEED-GCVVPD 345 (582)
T ss_pred EecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcce--eccCcceEEEeeeeccc-CceEEE
Confidence 9 2 556888999998875444333 23459999999999998 799999
Q ss_pred ecccCCcc
Q 039955 317 APNILSIE 324 (420)
Q Consensus 317 ~~~~~~~~ 324 (420)
.|++.+..
T Consensus 346 ~~~~~~~~ 353 (582)
T KOG1285|consen 346 LCVYFDLS 353 (582)
T ss_pred EEEEechh
Confidence 99887644
No 8
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=54.21 E-value=9.8 Score=37.19 Aligned_cols=37 Identities=16% Similarity=0.443 Sum_probs=32.4
Q ss_pred EEEEeCCeEEEE-eeCCccEEEccCCCCCCcccccccccCCcC
Q 039955 183 SLSFLGDHLFAI-CEGDLPYAVRLTSNGDTDTKTLGRHDFDVK 224 (420)
Q Consensus 183 ~v~~~~grLlAl-~E~~~Py~id~~~~~d~TLeTlG~~d~~g~ 224 (420)
++..+++.+|+| |-.+..|.+|++ ||+++|++.|.|+
T Consensus 95 Git~~gd~~y~LTw~egvaf~~d~~-----t~~~lg~~~y~Ge 132 (262)
T COG3823 95 GITKLGDYFYQLTWKEGVAFKYDAD-----TLEELGRFSYEGE 132 (262)
T ss_pred ceeeccceEEEEEeccceeEEEChH-----HhhhhcccccCCc
Confidence 367789999999 578899999987 8999999999986
No 9
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=33.98 E-value=3e+02 Score=28.48 Aligned_cols=104 Identities=15% Similarity=0.205 Sum_probs=52.7
Q ss_pred eEEEEEeCCCCCCCceEEEecCCceeEeecceeecCCCeEEEEecccCCccccccccccCCccEEEEcccCCcCCCCCCC
Q 039955 274 SRIGVIPRCAKDSLQMRWFDVPGFNNIHAINEWDEEDGNVIILAPNILSIEQAFGKTELVPCLMEKNTRSGGVAANTEAD 353 (420)
Q Consensus 274 tr~gVipR~~~~~~~v~wfe~p~~f~fH~~NA~Ee~dg~IVvd~~~~~~~~~~l~r~dl~~~~l~~~l~tGGvPr~~~~~ 353 (420)
..+.||+-.. ...+.-|++.. ..|..=+|-.+ |.-...+.+ +..+..+|+.+.++.+-.+.|+-|+.-+-.
T Consensus 16 ~~v~viD~~t--~~~~~~i~~~~--~~h~~~~~s~D-gr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 16 GSVAVIDGAT--NKVVARIPTGG--APHAGLKFSPD-GRYLYVANR----DGTVSVIDLATGKVVATIKVGGNPRGIAVS 86 (369)
T ss_dssp TEEEEEETTT---SEEEEEE-ST--TEEEEEE-TT--SSEEEEEET----TSEEEEEETTSSSEEEEEE-SSEEEEEEE-
T ss_pred CEEEEEECCC--CeEEEEEcCCC--CceeEEEecCC-CCEEEEEcC----CCeEEEEECCcccEEEEEecCCCcceEEEc
Confidence 4566666443 23345555432 23554455443 343222221 233444466665555445666444433444
Q ss_pred CCCcEEEEEEEeCCCCceEEEEEeCCCCCCCeeEEEEcC
Q 039955 354 EDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKST 392 (420)
Q Consensus 354 EDDG~lls~v~d~~~~~S~l~VlDA~~~~~~pVArv~LP 392 (420)
.|.-||++-.+.. ..+.|||++++ +++.+|...
T Consensus 87 ~DG~~~~v~n~~~----~~v~v~D~~tl--e~v~~I~~~ 119 (369)
T PF02239_consen 87 PDGKYVYVANYEP----GTVSVIDAETL--EPVKTIPTG 119 (369)
T ss_dssp -TTTEEEEEEEET----TEEEEEETTT----EEEEEE--
T ss_pred CCCCEEEEEecCC----CceeEeccccc--cceeecccc
Confidence 5777888777665 58999999997 889988764
No 10
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=29.78 E-value=1.1e+02 Score=20.39 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCCCeeEEEEcCCcCCCCC
Q 039955 369 GESKFLVTDAKSPHLDIEAVVKSTQSVPTGS 399 (420)
Q Consensus 369 ~~S~l~VlDA~~~~~~pVArv~LP~rVP~GF 399 (420)
+...+.|||+++. ..+.++.+. .-|.++
T Consensus 12 ~~~~v~~id~~~~--~~~~~i~vg-~~P~~i 39 (42)
T TIGR02276 12 GSNTVSVIDTATN--KVIATIPVG-GYPFGV 39 (42)
T ss_pred CCCEEEEEECCCC--eEEEEEECC-CCCceE
Confidence 3468899999886 788999884 666654
No 11
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=28.46 E-value=1e+02 Score=31.92 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=23.6
Q ss_pred CCCcEEEEEEEeCCCCceEEEEEeCCCCCCCeeEEEEcCC
Q 039955 354 EDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQ 393 (420)
Q Consensus 354 EDDG~lls~v~d~~~~~S~l~VlDA~~~~~~pVArv~LP~ 393 (420)
+|.-++..-+++.+. +++|+|++++ ++++|+.++.
T Consensus 325 ~dG~~v~vS~~~~~~---~i~v~D~~Tl--~~~~~i~~~t 359 (369)
T PF02239_consen 325 PDGKEVWVSVWDGNG---AIVVYDAKTL--KEKKRIPVPT 359 (369)
T ss_dssp TTSSEEEEEEE--TT---EEEEEETTTT--EEEEEEE--S
T ss_pred CCCCEEEEEEecCCC---EEEEEECCCc--EEEEEEEeeC
Confidence 344556556666543 9999999998 8999999653
No 12
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=23.35 E-value=83 Score=21.42 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=19.5
Q ss_pred ccceEEEEeCCeEEEEeeCCccEEEccC
Q 039955 179 LANASLSFLGDHLFAICEGDLPYAVRLT 206 (420)
Q Consensus 179 ~ANT~v~~~~grLlAl~E~~~Py~id~~ 206 (420)
..+.+++..+|++|+.++++.-|.+|+.
T Consensus 12 ~~~~~~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 12 PIWSSPAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp ---S--EECTSEEEEE-TTSEEEEEETT
T ss_pred CcCcCCEEECCEEEEEcCCCEEEEEeCC
Confidence 3456678889999999999999999864
Done!