Query 039955
Match_columns 420
No_of_seqs 234 out of 1027
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3npe_A 9-CIS-epoxycarotenoid d 100.0 2.9E-96 1E-100 776.3 31.7 364 43-414 3-529 (529)
2 2biw_A Apocarotenoid-cleaving 100.0 6.1E-83 2.1E-87 669.2 30.2 305 88-406 19-490 (490)
3 3kvc_A Retinoid isomerohydrola 100.0 2.7E-79 9.1E-84 647.4 29.3 305 89-406 12-533 (533)
4 2ece_A 462AA long hypothetical 23.2 80 0.0027 32.6 5.0 42 356-399 148-193 (462)
5 1scf_A Stem cell factor; steel 18.2 26 0.00087 33.4 0.0 48 24-71 181-231 (273)
6 1qks_A Cytochrome CD1 nitrite 15.3 1.7E+02 0.0057 30.3 5.4 36 354-391 512-547 (567)
7 2mad_H Methylamine dehydrogena 14.6 1.9E+02 0.0066 27.8 5.3 39 353-393 275-318 (373)
8 2kyj_A LITX; scorpion toxin, i 11.4 60 0.002 21.4 0.3 14 14-27 7-22 (36)
9 2oiz_A Aromatic amine dehydrog 11.3 2.7E+02 0.0094 26.2 5.2 43 353-399 262-310 (361)
10 3hn3_A Beta-G1, beta-glucuroni 11.0 4E+02 0.014 27.7 6.8 57 136-206 77-134 (613)
No 1
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=2.9e-96 Score=776.25 Aligned_cols=364 Identities=32% Similarity=0.557 Sum_probs=306.8
Q ss_pred CCCccCCCCchhhHHHHHHHHHHHHHhHhhhccCCCCCCCCCcchhcccCCcCCCcCCCCccceeeecCCCCCCC-----
Q 039955 43 SSQRKTSSSSSSARTMIVNTINNLFNNLMMRNSNYKLQPSLDPKRALSNNFAPVDELPPTQCQVIQGSLPSCLDE----- 117 (420)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~pl~~~~dp~~~l~g~fapv~E~~~~~~~~V~G~IP~~L~G----- 117 (420)
.+++++||+.|++++++||++|++|++++. ++++||++++||..+|+|||+||.|.+....+.|+|+||+||+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~fapv~ee~~~~~l~V~G~IP~~L~Gt~~RN 81 (529)
T 3npe_A 3 EGGKKQLNLFQRAAAAALDAFEEGFVANVL-ERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARN 81 (529)
T ss_dssp -----CCCSHHHHHHHHHHHHHHHTCCCCC-CTTSCCCTTTCHHHHTSGGGSCCCCEEEEESCCEEECCCTTCEEEEEEC
T ss_pred CcCcCCCChhHHHHHHHHHHHHHHHHhhhc-cccCCCCCCCCccchhccCcccccccCCcccceEeecCCccCCceEEEe
Confidence 357899999999999999999998887631 46899999999999999999999666666678899999999998
Q ss_pred ----------CCCccCCCCcEEEEEEeCCcE-EEEEeecccHHHHHHHHcCCccccccccc------------------c
Q 039955 118 ----------PYHLFDGDAMLHCIRISQGQA-TFCSRCVKTYKYTIENTHELLSLQLVFSQ------------------A 168 (420)
Q Consensus 118 ----------~~HwFDGDGMlha~~f~~G~v-~Y~~RyV~T~~~~~E~~agr~~f~~~~~~------------------~ 168 (420)
++||||||||||+|+|+||+| +|+||||||++|++|+++|+++|++.+++ .
T Consensus 82 GpnP~f~~~~~~HwFDGdGmlh~~~f~~G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 161 (529)
T 3npe_A 82 GANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAAC 161 (529)
T ss_dssp CBCCSSCCSSCCCGGGSCBEEEEEEEETTEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHHHHHHHHHT
T ss_pred cCCcCcCCcCCCccCCCCceEEEEEECCCccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhhhhhhhccc
Confidence 569999999999999999999 99999999999999999999999875543 1
Q ss_pred cccccCCCCCccceEEEEeCCeEEEEeeCCccEEEccCCCCCCcccccccccCCcCCCCCCcccccccCCCC------ce
Q 039955 169 NLISINNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFDVKSGMNMTAHPKKRPCNR------RN 242 (420)
Q Consensus 169 g~~~~~~~~~~ANT~v~~~~grLlAl~E~~~Py~id~~~~~d~TLeTlG~~d~~g~l~~~ftAHPK~DP~tG------y~ 242 (420)
++++..+++|+|||||++|+||||||||++.||++++++++ ||||+|++||+|+|..+||||||+||.|| |+
T Consensus 162 ~~~~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~--tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~ 239 (529)
T 3npe_A 162 GLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDG--DLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYD 239 (529)
T ss_dssp TSCCGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTS--CEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECC
T ss_pred ccccccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCC--CcceeeeeccCCccCCcccccCcCCCCCCcEEEEEee
Confidence 22333346789999999999999999999999999766544 59999999999999999999999999999 22
Q ss_pred e----------E-----------EeCCCcceeeeeeeeecccceEEe--------------c-------CCCCeEEEEEe
Q 039955 243 V----------C-----------FPLWSNTSVCDTLLLRCKRLFAAF--------------G-------STKASRIGVIP 280 (420)
Q Consensus 243 v----------~-----------i~l~~p~~iHDfaiT~~~eny~V~--------------G-------~~~~tr~gVip 280 (420)
+ + |+++.|+|||||||| |||+|| | +++++||||||
T Consensus 240 ~~~~p~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiT---enyvVf~~~Pl~~~~~~~~~g~~~~~~~p~~~tr~~Vip 316 (529)
T 3npe_A 240 VIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAIT---ENLVVVPDHQVVFKLQEMLRGGSPVVLDAAKTSRFGVLP 316 (529)
T ss_dssp SSSSCCCEEEEECTTCCBCCCEECCCSSCBCCCCCEEC---SSEEEEEECSEEECGGGGTTTCCSEEECTTSCCEEEEEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEEEeCCCCceEeeEEec---CCeEEEEeCCeEEcHHHHhCCCCceEECCCCCcEEEEEE
Confidence 1 1 677899999999999 999999 2 89999999999
Q ss_pred CCCCCCCceEEEecCCceeEeecceeecCC-CeEEEEecccCCcc-----------cccccc--ccCCc-----------
Q 039955 281 RCAKDSLQMRWFDVPGFNNIHAINEWDEED-GNVIILAPNILSIE-----------QAFGKT--ELVPC----------- 335 (420)
Q Consensus 281 R~~~~~~~v~wfe~p~~f~fH~~NA~Ee~d-g~IVvd~~~~~~~~-----------~~l~r~--dl~~~----------- 335 (420)
|++++.+.|+||++|+||+||++|||||++ |+||||.|++.+.+ +.|.|+ ++.++
T Consensus 317 R~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~~~~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~ 396 (529)
T 3npe_A 317 KHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPS 396 (529)
T ss_dssp TTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCSCCSSSSCCCCEEEEEEECTTTCCEEEEESSCSS
T ss_pred CCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhhhhccchhhccceEEEEEcCCCCCEEeEEecccc
Confidence 998766789999999999999999999864 68998888764422 122333 21111
Q ss_pred -----c-----------------------------EEEE-cccC-------------C----cCCCC----CCCCCCcEE
Q 039955 336 -----L-----------------------------MEKN-TRSG-------------G----VAANT----EADEDNGYV 359 (420)
Q Consensus 336 -----~-----------------------------l~~~-l~tG-------------G----vPr~~----~~~EDDG~l 359 (420)
. |.++ +.|| | |||++ +++||||||
T Consensus 397 ~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~~~~~~~g~~~~~~EPvFVPrp~~~~~~~~EDDG~l 476 (529)
T 3npe_A 397 QQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYV 476 (529)
T ss_dssp SCCCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCCEEEEECCTTBCCCCCEEEECCSCSSSSCCTTCEEE
T ss_pred cCccccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCCCceEEEEcCCCccccCCEeeeCCCCCCCCCCCCCcEE
Confidence 0 1111 3333 1 59998 889999999
Q ss_pred EEEEEeCCCCceEEEEEeCCCCCCCeeEEEEcCCcCCCCCCcccccchhHhhhhc
Q 039955 360 VSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREIELRKLYK 414 (420)
Q Consensus 360 ls~v~d~~~~~S~l~VlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~~~l~~~~~ 414 (420)
|++|+|+.+++|+|+||||++| ++||||+||+||||||||+|++++||++|++
T Consensus 477 Ls~V~d~~~~~S~LlILDA~~l--~~vArv~LP~rvP~GfHG~wv~~~~l~~q~~ 529 (529)
T 3npe_A 477 LTFVHDERAGTSELLVVNAADM--RLEATVQLPSRVPFGFHGTFITGQELEAQAA 529 (529)
T ss_dssp EEEEEBSSCCCEEEEEEETTTT--EEEEEEEESSCCCCCSCEEEEEHHHHTTCCC
T ss_pred EEEEEECCCCcEEEEEEeCCCC--ccceEEECCCCCCCCccccccCHHHhhhhhC
Confidence 9999999999999999999999 6799999999999999999999999999863
No 2
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=6.1e-83 Score=669.19 Aligned_cols=305 Identities=22% Similarity=0.345 Sum_probs=258.6
Q ss_pred hcccCCcCC-CcCCCCccceeeecCCCCCCC----------------CCCccCCCCcEEEEEE-eCCcEEEEEeecccHH
Q 039955 88 ALSNNFAPV-DELPPTQCQVIQGSLPSCLDE----------------PYHLFDGDAMLHCIRI-SQGQATFCSRCVKTYK 149 (420)
Q Consensus 88 ~l~g~fapv-~E~~~~~~~~V~G~IP~~L~G----------------~~HwFDGDGMlha~~f-~~G~v~Y~~RyV~T~~ 149 (420)
.|+++|+|+ +|.+ ..+..|+|+||+||+| ++||||||||||+|+| ++|+|+|+||||||++
T Consensus 19 ~~~~~f~~~~~E~~-~~l~~V~G~IP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmlh~~~f~~~G~v~y~~R~v~T~~ 97 (490)
T 2biw_A 19 DWLRGYQSQPQEWD-YWVEDVEGSIPPDLQGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPGDGRVHFQSKFVRTQG 97 (490)
T ss_dssp HHHHTTSCCCSCEE-EECCCEEECCCTTCCEEEEECCBCCSEETTEECSSGGGSCBEEEEEEECSSSCCEEEEEECCCHH
T ss_pred chhhhccCccccCC-cccceEEeCCCCCCCeEEEEeCCCcCcCCCCcccCccCCCCeEEEEEECCCCEEEEEcceEeCHH
Confidence 478999999 7875 3444599999999999 5699999999999999 9999999999999999
Q ss_pred HHHHHHcCCcccccccccc-------cccccCCCCCccceEEEEeCCeEEEEeeCCccEEEccCCCCCCcccccccccCC
Q 039955 150 YTIENTHELLSLQLVFSQA-------NLISINNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRHDFD 222 (420)
Q Consensus 150 ~~~E~~agr~~f~~~~~~~-------g~~~~~~~~~~ANT~v~~~~grLlAl~E~~~Py~id~~~~~d~TLeTlG~~d~~ 222 (420)
|++|+++||++|++++++. ++++ ...+|+|||||++|+||||||||++.||+||+. ||||+|++||+
T Consensus 98 ~~~e~~ag~~~~~~~fg~~~~~~~~~~~~~-~~~~~~aNT~v~~~~g~llAl~E~~~p~~ldp~-----tLeT~G~~d~~ 171 (490)
T 2biw_A 98 YVEEQKAGKMIYRGVFGSQPAGGWLKTIFD-LRLKNIANTNITYWGDRLLALWEGGQPHRLEPS-----NLATIGLDDLG 171 (490)
T ss_dssp HHHHHHHTSCCSBCTTSCCCSSTHHHHTTC-CCBCCCCCSEEEEETTEEEEECTTSCCEEECTT-----TCCEEEECCTT
T ss_pred HHHHHHhCCcccccccccCCCCchhhhhcc-cccCCCCEEEEEEECCEEEEEEcCCCCEecccc-----cccEeeeeccC
Confidence 9999999999999855431 1122 235799999999999999999999999999986 79999999999
Q ss_pred cCC-C-CCCcccccccCC------CC----cee------------E-----------EeCCCcceeeeeeeeecccceEE
Q 039955 223 VKS-G-MNMTAHPKKRPC------NR----RNV------------C-----------FPLWSNTSVCDTLLLRCKRLFAA 267 (420)
Q Consensus 223 g~l-~-~~ftAHPK~DP~------tG----y~v------------~-----------i~l~~p~~iHDfaiT~~~eny~V 267 (420)
|+| . ..||||||+||. || ||+ + +++|.++|||||||| |||+|
T Consensus 172 g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~HDfaiT---eny~V 248 (490)
T 2biw_A 172 GILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLELDPQGKLLRQKTETFPGFAFIHDFAIT---PHYAI 248 (490)
T ss_dssp TTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEESSEEEEEEEEECTTSCEEEEEEEEEESCCCCCCCEEC---SSEEE
T ss_pred CcccCCcccccCceECccccccCCCCeEEEEEecCCCCcEEEEEEECCCCCEEeeEEEeCCCCceEeeeecc---CCEEE
Confidence 999 5 479999999999 99 222 0 678899999999999 99999
Q ss_pred e--------------c-----------CCCCeEEEEEeCCCCCCCceEEEecCCceeEeecceeecCCCeEEEEecccCC
Q 039955 268 F--------------G-----------STKASRIGVIPRCAKDSLQMRWFDVPGFNNIHAINEWDEEDGNVIILAPNILS 322 (420)
Q Consensus 268 ~--------------G-----------~~~~tr~gVipR~~~~~~~v~wfe~p~~f~fH~~NA~Ee~dg~IVvd~~~~~~ 322 (420)
| | +++++|||||||+ .+.++||++|+||+||++|||||+ |+||+|+|++.+
T Consensus 249 ~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~VipR~---~~~v~~f~~~~~f~fH~~NA~Ee~-~~Iv~d~~~~~~ 324 (490)
T 2biw_A 249 FLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPRD---GGEIKRIPVQAGFVFHHANAFEEN-GKIILDSICYNS 324 (490)
T ss_dssp EEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEEETT---SCCCEEEEECCCEEEEEEEEEEET-TEEEEEEEEESC
T ss_pred EEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEEECC---CCccEEEecCCCeEEecccceecC-CeEEEEEeccCC
Confidence 9 1 7999999999999 256999999999999999999997 599999998765
Q ss_pred cc------------------cccccc--ccCCcc--------------------------------------------EE
Q 039955 323 IE------------------QAFGKT--ELVPCL--------------------------------------------ME 338 (420)
Q Consensus 323 ~~------------------~~l~r~--dl~~~~--------------------------------------------l~ 338 (420)
.+ +.|.|| ++.++. |.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~l~R~~i~l~~g~v~~~~l~~~~~EfP~In~~~~G~~~Ry~Y~~~~~~~~~~~~~~~l~ 404 (490)
T 2biw_A 325 LPQVDTDGDFRSTNFDNLDPGQLWRFTIDPAAATVEKQLMVSRCCEFPVVHPQQVGRPYRYVYMGAAHHSTGNAPLQAIL 404 (490)
T ss_dssp CCCCCTTCCGGGCCGGGSCCCEEEEEEEETTTTEEEEEEEECSCEEEEECCGGGTTSCCSEEEEEECSSSSSCCCCCEEE
T ss_pred cccccccccccccccccCCCceEEEEEEECCCCceEEEeccCCcccccccChhhCCceeeeEEEEeecCCCCCCCCCeEE
Confidence 32 123343 222211 11
Q ss_pred EE-cccC-------------C----cCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCCCeeEEEEcCCcCCCCCC
Q 039955 339 KN-TRSG-------------G----VAANTEADEDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKSTQSVPTGSH 400 (420)
Q Consensus 339 ~~-l~tG-------------G----vPr~~~~~EDDG~lls~v~d~~~~~S~l~VlDA~~~~~~pVArv~LP~rVP~GFH 400 (420)
++ +.|| | |||+++++|||||||++|+|+++++|+|+||||++|+++|||||+||+|||||||
T Consensus 405 K~D~~tg~~~~~~~g~g~~~~EPvFVPrp~~~~EDDG~ll~~V~d~~~~~S~l~IlDA~~~~~~pvArv~lP~rvP~GfH 484 (490)
T 2biw_A 405 KVDLESGTETLRSFAPHGFAGEPIFVPRPGGVAEDDGWLLCLIYKADLHRSELVILDAQDITAPAIATLKLKHHIPYPLH 484 (490)
T ss_dssp EEETTTTEEEEEECTTTEECCCCEEEECTTCCSTTCEEEEEEEEETTTTEEEEEEEETTCTTSCCSEEEECSSCCCCCCC
T ss_pred EEECCCCCEEEEECCCCccccCCEEecCCCCCCCCCcEEEEEEEeCCCCceeEEEEccCCCCcCceEEEeCCCcCCCCcc
Confidence 11 2233 1 5999999999999999999999999999999999999899999999999999999
Q ss_pred cccccc
Q 039955 401 GLFVRE 406 (420)
Q Consensus 401 G~fv~~ 406 (420)
|+|+++
T Consensus 485 G~wv~~ 490 (490)
T 2biw_A 485 GSWAQT 490 (490)
T ss_dssp EEEEEC
T ss_pred ccccCC
Confidence 999863
No 3
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=2.7e-79 Score=647.44 Aligned_cols=305 Identities=21% Similarity=0.259 Sum_probs=250.4
Q ss_pred cccCCcCCCcCCCCccceeeecCCCCCCC----------------CCCccCCCCcEEEEEEeCCcEEEEEeecccHHHHH
Q 039955 89 LSNNFAPVDELPPTQCQVIQGSLPSCLDE----------------PYHLFDGDAMLHCIRISQGQATFCSRCVKTYKYTI 152 (420)
Q Consensus 89 l~g~fapv~E~~~~~~~~V~G~IP~~L~G----------------~~HwFDGDGMlha~~f~~G~v~Y~~RyV~T~~~~~ 152 (420)
++.+|+|++|.+....+.|+|+||+||+| ++||||||||||+|+|++|+|+|+||||||++|++
T Consensus 12 ~~~~f~~~~E~~~p~~l~V~G~IP~~L~Gtl~RNGPg~~~~g~~~~~HwFDGdGmlh~~~~~~G~v~y~~R~v~T~~~~~ 91 (533)
T 3kvc_A 12 YKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYVR 91 (533)
T ss_dssp GGGGGSCCCCCSSCEECEEEECCCTTCCEEEEEEEECCCEETTEECCBTTTSCEEEEEEEEETTEEEEEEEECCCHHHHH
T ss_pred hhhhcCcccccCCceeeeEEeeCCCCCceEEEEeCCCccccCCcccccccCCCCEEEEEEEeCCEEEEEEEEecCHHHHH
Confidence 57899999888766568899999999999 57999999999999999999999999999999999
Q ss_pred HHHcCCccccccccc------ccccc-------cCCCCCccceEEEEeCCeEEEEeeCCccEEEccCCCCCCcccccccc
Q 039955 153 ENTHELLSLQLVFSQ------ANLIS-------INNGFGLANASLSFLGDHLFAICEGDLPYAVRLTSNGDTDTKTLGRH 219 (420)
Q Consensus 153 E~~agr~~f~~~~~~------~g~~~-------~~~~~~~ANT~v~~~~grLlAl~E~~~Py~id~~~~~d~TLeTlG~~ 219 (420)
|+++||++|+++.+. .+++. ....+++|||||++|+||||||||++.||+||++ ||||+|++
T Consensus 92 e~~agr~~~~~fg~~~~~~p~~~~~~~~~~~~~~~~~~~~ANt~v~~~~g~LlAl~E~~~p~~iDp~-----tLeT~G~~ 166 (533)
T 3kvc_A 92 AMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALVNIYPVGEDYYACTETNFITKVNPE-----TLETIKQV 166 (533)
T ss_dssp HHHHTSCCSCBTTBCC-------------------CCCCCCCSEEEEETTEEEEECSSSEEEEECTT-----TCCEEEEE
T ss_pred HHHcCCcceeccCcccCCcchhhHHHHHHHhhccCCCCCCCEEEEEEECCEEEEEEcCCcCEEeChH-----Hccccccc
Confidence 999999998774432 12221 1135799999999999999999999999999987 89999999
Q ss_pred cCCcCCC-CCCcccccccCCCC----ce------------eE---------------------E---eCCCcceeeeeee
Q 039955 220 DFDVKSG-MNMTAHPKKRPCNR----RN------------VC---------------------F---PLWSNTSVCDTLL 258 (420)
Q Consensus 220 d~~g~l~-~~ftAHPK~DP~tG----y~------------v~---------------------i---~l~~p~~iHDfai 258 (420)
||+|+|+ ..||||||+|| || || ++ | +++.|+|||||||
T Consensus 167 d~~g~l~~~~~tAHPk~Dp-tGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~iHDFai 245 (533)
T 3kvc_A 167 DLCNYVSVNGATAHPHIEN-DGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGL 245 (533)
T ss_dssp EHHHHSSCSCCCSCCEECT-TSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCCBCCCCCEE
T ss_pred ccCCccCCCccCCCCccCC-CCCEEEEeeccCCCCCcEEEEEEECccccccccccccceeEEeeccccCCCCceeeeeee
Confidence 9999997 57999999999 88 22 11 1 1347899999999
Q ss_pred eecccceEEe--------------c---------------CCCCeEEEEEeCCCCCCCceEEEecCCceeEeecceeecC
Q 039955 259 LRCKRLFAAF--------------G---------------STKASRIGVIPRCAKDSLQMRWFDVPGFNNIHAINEWDEE 309 (420)
Q Consensus 259 T~~~eny~V~--------------G---------------~~~~tr~gVipR~~~~~~~v~wfe~p~~f~fH~~NA~Ee~ 309 (420)
| |||+|| | +++++|||||||++++ ..++||++++||+||++|||||+
T Consensus 246 T---eny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~-~~~~~~~~~~~f~fH~~NA~Ee~ 321 (533)
T 3kvc_A 246 T---PNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKK-YINNKYRTSPFNLFHHINTYEDH 321 (533)
T ss_dssp C---SSEEEEEECSEEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTE-EEEEEEEECCEEEEEEEEEEEET
T ss_pred c---CCEEEEEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCC-cccEEEEeCCeeEEeeeeeEEeC
Confidence 9 999999 2 6789999999999743 23589999999999999999986
Q ss_pred CCeEEEEecccCC-cc--------------------------cccccc--ccCCc-------------------------
Q 039955 310 DGNVIILAPNILS-IE--------------------------QAFGKT--ELVPC------------------------- 335 (420)
Q Consensus 310 dg~IVvd~~~~~~-~~--------------------------~~l~r~--dl~~~------------------------- 335 (420)
|+||+|+|++.+ .. ..+.|| ++...
T Consensus 322 -~~Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~~~~~~ 400 (533)
T 3kvc_A 322 -EFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDET 400 (533)
T ss_dssp -TEEEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEECTTSE
T ss_pred -CEEEEEEeeeCCchhhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCcccccccccccccccccceeeeccCCc
Confidence 699999998865 11 123343 22110
Q ss_pred ------cE-------EEE---------------------------------cccC------------C----cCCCCCCC
Q 039955 336 ------LM-------EKN---------------------------------TRSG------------G----VAANTEAD 353 (420)
Q Consensus 336 ------~l-------~~~---------------------------------l~tG------------G----vPr~~~~~ 353 (420)
.| .|+ +.|| | |||+++++
T Consensus 401 ~~~~~~~l~~~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~~~~~~~l~K~D~~tg~~~~w~~~~~~~~EPiFVPrp~~~~ 480 (533)
T 3kvc_A 401 IWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLGLNHFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALE 480 (533)
T ss_dssp EEEECEEEECBTTEEEEEEECCHHHHTTSCCCEEEEEEEETTEEEEEEEEETTTCCEEEECCTTCBCCCCEEEECTTCCS
T ss_pred eeeeeeeeccCCcccccCceECHHHhCCCcccEEEEeccCCCCCceeEEEEcCCCCEEEEeCCCccccCceeecCCCCCC
Confidence 00 011 2333 1 59999999
Q ss_pred CCCcEEEEEEEeCCC--CceEEEEEeCCCCCCCeeEEEEcCCcCCCCCCcccccc
Q 039955 354 EDNGYVVSYVHDAKT--GESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVRE 406 (420)
Q Consensus 354 EDDG~lls~v~d~~~--~~S~l~VlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~ 406 (420)
|||||||++|+|+.+ ++|+|+||||++| ++||||+||+||||||||+|+++
T Consensus 481 EDDG~lLs~V~d~~~~~~~s~LlILDA~~l--~~vArv~lP~rvP~GfHG~w~~~ 533 (533)
T 3kvc_A 481 EDDGVVLSVVVSPGAGQKPAYLLILNAKDL--SEVARAEVEINIPVTFHGLFKKS 533 (533)
T ss_dssp TTCEEEEEEEECCSTTSCSEEEEEEETTTC--CEEEEEEESSCCCCCCEEEEEEC
T ss_pred CCCcEEEEEEEeCCcCCCccEEEEEeCCCC--hhhEEEEeCCCCCCCccccccCC
Confidence 999999999999986 5679999999999 57999999999999999999874
No 4
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=23.23 E-value=80 Score=32.56 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=31.0
Q ss_pred CcEEEEEEEeC-CCCceEEEEEeCCCCCCCeeEEEEcC---CcCCCCC
Q 039955 356 NGYVVSYVHDA-KTGESKFLVTDAKSPHLDIEAVVKST---QSVPTGS 399 (420)
Q Consensus 356 DG~lls~v~d~-~~~~S~l~VlDA~~~~~~pVArv~LP---~rVP~GF 399 (420)
||+.|+..=+. .++...|++||++++ +.+++++.+ ..++|.|
T Consensus 148 dGi~Vs~~g~~~g~~~g~v~vlD~~T~--~v~~~~~~~~~~~~~~Yd~ 193 (462)
T 2ece_A 148 DAIYISALGNEEGEGPGGILMLDHYSF--EPLGKWEIDRGDQYLAYDF 193 (462)
T ss_dssp SCEEEEEEEETTSCSCCEEEEECTTTC--CEEEECCSBCTTCCCCCCE
T ss_pred CeEEEEcCCCcCCCCCCeEEEEECCCC--eEEEEEccCCCCccccceE
Confidence 45777777663 345679999999998 789999865 3456666
No 5
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=18.23 E-value=26 Score=33.44 Aligned_cols=48 Identities=27% Similarity=0.352 Sum_probs=0.0
Q ss_pred CCCcCCCCCccc-cccccccCCCccCCCCchh--hHHHHHHHHHHHHHhHh
Q 039955 24 PPLSLPSSSSSQ-RKTSLSSSSQRKTSSSSSS--ARTMIVNTINNLFNNLM 71 (420)
Q Consensus 24 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~ 71 (420)
+|..+|--+|+. |.+|.|++.++..+..-.+ .++++|=++-.++..|+
T Consensus 181 k~~~lp~v~as~lrn~ss~sn~~a~~~~~~~slq~~~~~l~al~slvigf~ 231 (273)
T 1scf_A 181 KPFMLPPVAASSLRNDSSSSNRKAKNPPGDSSLHWAAMALPALFSLIIGFA 231 (273)
T ss_dssp ---------------------------------------------------
T ss_pred CcccCCCCCchhccCccccccccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 456666666665 8888776666666655444 36777778877777775
No 6
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=15.26 E-value=1.7e+02 Score=30.34 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=29.2
Q ss_pred CCCcEEEEEEEeCCCCceEEEEEeCCCCCCCeeEEEEc
Q 039955 354 EDNGYVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKS 391 (420)
Q Consensus 354 EDDG~lls~v~d~~~~~S~l~VlDA~~~~~~pVArv~L 391 (420)
.|.-+|.+.+++.++..+.++|+|++++ +.+++++=
T Consensus 512 ~~G~~~~~s~~~~~~~~~~i~v~D~~t~--~~~~~i~~ 547 (567)
T 1qks_A 512 KDGTEVWFSVWNGKDQESALVVVDDKTL--ELKHVIKD 547 (567)
T ss_dssp TTSSEEEEEEECCTTSCCEEEEEETTTT--EEEEEECC
T ss_pred CCCCEEEEEeecCCCCCCcEEEEECCCc--eEEEEeCC
Confidence 4555777778887777899999999997 78888883
No 7
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=14.60 E-value=1.9e+02 Score=27.75 Aligned_cols=39 Identities=0% Similarity=-0.046 Sum_probs=26.3
Q ss_pred CCCCcEEEEEEEeCCC-----CceEEEEEeCCCCCCCeeEEEEcCC
Q 039955 353 DEDNGYVVSYVHDAKT-----GESKFLVTDAKSPHLDIEAVVKSTQ 393 (420)
Q Consensus 353 ~EDDG~lls~v~d~~~-----~~S~l~VlDA~~~~~~pVArv~LP~ 393 (420)
..|.+.|.+..++... ...++.|||+++. +.++++.++.
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--~vv~~i~~g~ 318 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--QTSSQISLGH 318 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCC--EEEEEEECCC
Confidence 3455555555543211 2468999999996 7889998876
No 8
>2kyj_A LITX; scorpion toxin, insect toxin, disulfide-directed hairpin, to; NMR {Liocheles australasiae} PDB: 2lds_A
Probab=11.45 E-value=60 Score=21.40 Aligned_cols=14 Identities=57% Similarity=1.436 Sum_probs=10.5
Q ss_pred eeccccCCCC--CCCc
Q 039955 14 KYHSCLKPKK--PPLS 27 (420)
Q Consensus 14 ~~~~~~~~~~--~~~~ 27 (420)
.|-||.+|+| |+|-
T Consensus 7 ~y~scvrp~kckp~lk 22 (36)
T 2kyj_A 7 EYESCVRPRKCKPPLK 22 (36)
T ss_dssp SSCBCCTTCEECTTCE
T ss_pred hhhhccCccccCCCcc
Confidence 4789999984 6653
No 9
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=11.34 E-value=2.7e+02 Score=26.15 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=30.7
Q ss_pred CCCCcEEEEEEE-eCCC-----CceEEEEEeCCCCCCCeeEEEEcCCcCCCCC
Q 039955 353 DEDNGYVVSYVH-DAKT-----GESKFLVTDAKSPHLDIEAVVKSTQSVPTGS 399 (420)
Q Consensus 353 ~EDDG~lls~v~-d~~~-----~~S~l~VlDA~~~~~~pVArv~LP~rVP~GF 399 (420)
..|.+.+.+..+ +... ....+.|+|+++. +.++++.++. |+++
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~v~~i~~~~--p~~i 310 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QRVARIPGRD--ALSM 310 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--EEEEEEECTT--CCEE
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--cEEEEEecCC--eeEE
Confidence 356677766555 3321 2458999999996 7899999987 7776
No 10
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
Probab=11.04 E-value=4e+02 Score=27.67 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=40.7
Q ss_pred CcEEEEEeecccHHHHHHHHcCCcccccccccccccccCCCCCccceEEEEeCCeEEEEeeCC-ccEEEccC
Q 039955 136 GQATFCSRCVKTYKYTIENTHELLSLQLVFSQANLISINNGFGLANASLSFLGDHLFAICEGD-LPYAVRLT 206 (420)
Q Consensus 136 G~v~Y~~RyV~T~~~~~E~~agr~~f~~~~~~~g~~~~~~~~~~ANT~v~~~~grLlAl~E~~-~Py~id~~ 206 (420)
|.+.|+..|.-.+.++. ..|+.++..+ .++...+-++.+|++++-.+++ .|+++|++
T Consensus 77 G~~wYr~~f~~p~~~~~--~~~~~~~L~f------------~gv~~~a~V~vNG~~vg~~~~g~~~~~~dit 134 (613)
T 3hn3_A 77 GWVWYEREVILPERWTQ--DLRTRVVLRI------------GSAHSYAIVWVNGVDTLEHEGGYLPFEADIS 134 (613)
T ss_dssp SEEEEEEEECCCHHHHH--CTTEEEEEEE------------SCCCSEEEEEETTEEEEEEESSSSCEEEECH
T ss_pred eeEEEEEEEEeCchhhh--cCCCEEEEEE------------CCcceEEEEEECCEEEeEEcCCcceEEEECh
Confidence 67899999987766542 2344433321 1355567899999999999988 59999986
Done!