Query 039955
Match_columns 420
No_of_seqs 234 out of 1027
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 05:22:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039955.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039955hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qksa2 b.70.2.1 (A:136-567) C 30.1 23 0.0017 32.4 4.8 35 356-392 378-413 (432)
2 d1hzua2 b.70.2.1 (A:118-543) C 22.1 32 0.0023 30.7 4.1 33 358-392 375-407 (426)
3 d1m7ja2 b.92.1.6 (A:420-480) N 18.1 11 0.00078 26.2 -0.3 36 370-407 7-42 (61)
4 d1yq2a3 b.18.1.5 (A:4-219) bet 17.5 65 0.0047 27.0 4.8 58 135-206 113-171 (216)
5 d3dm8a1 d.17.4.20 (A:1-135) Un 13.4 96 0.007 22.9 4.4 31 127-158 105-135 (135)
6 d2bnga1 d.17.4.8 (A:13-144) Un 10.0 1.2E+02 0.0084 22.5 3.8 28 127-154 94-121 (132)
7 d2je8a4 b.18.1.5 (A:28-219) Be 9.4 1.2E+02 0.009 24.3 4.0 54 137-206 61-115 (192)
8 d1bhga2 b.18.1.5 (A:22-225) be 9.3 1.2E+02 0.0088 24.7 4.0 57 136-206 76-133 (204)
9 d1jmxb_ b.69.2.2 (B:) Quinohem 8.9 88 0.0064 25.3 2.9 21 371-393 313-333 (346)
10 d1jz8a3 b.18.1.5 (A:13-219) be 8.3 1.6E+02 0.011 24.0 4.3 56 135-206 106-162 (207)
No 1
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=30.08 E-value=23 Score=32.36 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=27.9
Q ss_pred Cc-EEEEEEEeCCCCceEEEEEeCCCCCCCeeEEEEcC
Q 039955 356 NG-YVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKST 392 (420)
Q Consensus 356 DG-~lls~v~d~~~~~S~l~VlDA~~~~~~pVArv~LP 392 (420)
|| +|++-++...+..+.++|+|++++ +..++++-|
T Consensus 378 DG~~v~~S~~~~~~~~g~i~i~D~~T~--k~~~~i~~~ 413 (432)
T d1qksa2 378 DGTEVWFSVWNGKDQESALVVVDDKTL--ELKHVIKDE 413 (432)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTT--EEEEEECCT
T ss_pred CCCEEEEEEecCCCCCCcEEEEECCCc--eEEeEecCC
Confidence 44 777777777777889999999997 777888765
No 2
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.11 E-value=32 Score=30.72 Aligned_cols=33 Identities=33% Similarity=0.365 Sum_probs=26.5
Q ss_pred EEEEEEEeCCCCceEEEEEeCCCCCCCeeEEEEcC
Q 039955 358 YVVSYVHDAKTGESKFLVTDAKSPHLDIEAVVKST 392 (420)
Q Consensus 358 ~lls~v~d~~~~~S~l~VlDA~~~~~~pVArv~LP 392 (420)
+|++.++......+.+.|+|+++. +++++++-+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~--k~~~~i~~~ 407 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTL--KLKAVVKDP 407 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTT--EEEEEECCT
T ss_pred EEEEEEecCCCCCCeEEEEECCCC--eEEEEECCC
Confidence 777777777777888999999997 778887654
No 3
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=18.12 E-value=11 Score=26.18 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=29.2
Q ss_pred ceEEEEEeCCCCCCCeeEEEEcCCcCCCCCCcccccch
Q 039955 370 ESKFLVTDAKSPHLDIEAVVKSTQSVPTGSHGLFVREI 407 (420)
Q Consensus 370 ~S~l~VlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~~ 407 (420)
..+|+|+|..++ ..-|..+-|...+-|++..||...
T Consensus 7 ~ADlvvfDp~~i--~d~~~~~~~~~~~~Gi~~v~VnG~ 42 (61)
T d1m7ja2 7 YADLVVFDPATV--ADSATFEHPTERAAGIHSVYVNGA 42 (61)
T ss_dssp BCCEEEECTTTC--BCCCCSSSTTCCCBSEEEEEETTE
T ss_pred CCCEEEECHHHc--cCcccccccccccceeEEEEECCE
Confidence 357999999987 445777889999999999999765
No 4
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]}
Probab=17.48 E-value=65 Score=26.95 Aligned_cols=58 Identities=7% Similarity=0.061 Sum_probs=40.7
Q ss_pred CCcEEEEEeecccHHHHHHHHcCCcccccccccccccccCCCCCccceEEEEeCCeEEEEeeCCc-cEEEccC
Q 039955 135 QGQATFCSRCVKTYKYTIENTHELLSLQLVFSQANLISINNGFGLANASLSFLGDHLFAICEGDL-PYAVRLT 206 (420)
Q Consensus 135 ~G~v~Y~~RyV~T~~~~~E~~agr~~f~~~~~~~g~~~~~~~~~~ANT~v~~~~grLlAl~E~~~-Py~id~~ 206 (420)
+|.+-|+..|.....+. ...|+.++..+ .++....-++.+|++++..+++. |+++|++
T Consensus 113 ~~~gwYr~~f~~p~~~~--~~~gk~i~L~F------------~gv~~~a~V~vNG~~vG~~~ggy~pf~~DiT 171 (216)
T d1yq2a3 113 NPTGDFRRRFDVPAQWF--ESTTAALTLRF------------DGVESRYKVWVNGQEIGVGSGSRLAQEFDVS 171 (216)
T ss_dssp CCEEEEEEEEEECGGGG--STTEEEEEEEE------------SCEESCEEEEETTEEEEEECCTTSCEEEECT
T ss_pred CCccceEEEEEeccccc--ccCCcEEEEEE------------cccceeEEEEECCEEEeEEcCCeEEEEEECh
Confidence 45677888887766543 23455444331 13455578999999999999984 9999987
No 5
>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=13.38 E-value=96 Score=22.89 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=22.8
Q ss_pred cEEEEEEeCCcEEEEEeecccHHHHHHHHcCC
Q 039955 127 MLHCIRISQGQATFCSRCVKTYKYTIENTHEL 158 (420)
Q Consensus 127 Mlha~~f~~G~v~Y~~RyV~T~~~~~E~~agr 158 (420)
.+|-++|+||+++.-.-|+-|..+. ++..||
T Consensus 105 ~~~~~~~~dGkI~~~~~y~D~~~~~-~q~~g~ 135 (135)
T d3dm8a1 105 MALFTQFQNGRLTNLRMVLDTFDLV-EQALGR 135 (135)
T ss_dssp EEEEEEEETTEEEEEEEEECHHHHH-HHHHTC
T ss_pred EEEEEEEECCEEEEEEEEeCHHHHH-HHhhCC
Confidence 5678999999998888888876664 334443
No 6
>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.96 E-value=1.2e+02 Score=22.47 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=22.8
Q ss_pred cEEEEEEeCCcEEEEEeecccHHHHHHH
Q 039955 127 MLHCIRISQGQATFCSRCVKTYKYTIEN 154 (420)
Q Consensus 127 Mlha~~f~~G~v~Y~~RyV~T~~~~~E~ 154 (420)
+.+-++|+||++.+..-|.-+..+.+.-
T Consensus 94 ~~~~~~v~dGkI~~~~~y~D~~~~~~~l 121 (132)
T d2bnga1 94 VCGVFEVDDGRITLWRDYFDVYDMFKGL 121 (132)
T ss_dssp EEEEEEEETTEEEEEEEECCHHHHHHHH
T ss_pred EEEEEEEcCCEEEEEEEEeCHHHHHHHH
Confidence 4677899999999988899888776553
No 7
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=9.39 E-value=1.2e+02 Score=24.30 Aligned_cols=54 Identities=9% Similarity=0.121 Sum_probs=36.5
Q ss_pred cEEEEEeecccHHHHHHHHcCCcccccccccccccccCCCCCccceEEEEeCCeEEEEeeCCc-cEEEccC
Q 039955 137 QATFCSRCVKTYKYTIENTHELLSLQLVFSQANLISINNGFGLANASLSFLGDHLFAICEGDL-PYAVRLT 206 (420)
Q Consensus 137 ~v~Y~~RyV~T~~~~~E~~agr~~f~~~~~~~g~~~~~~~~~~ANT~v~~~~grLlAl~E~~~-Py~id~~ 206 (420)
...|+..|.-.+.. ..|+.++..+ + ++...+-++.+|+.++-+|++. ||++|++
T Consensus 61 ~~~y~~~f~~p~~~----~~~~~v~L~f-------~-----gv~~~a~V~vNG~~vG~h~g~f~~f~~DIT 115 (192)
T d2je8a4 61 DWEYRTSFIVSEEQ----LNRDGIQLIF-------E-----GLDTYADVYLNGSLLLKADNMFVGYTLPVK 115 (192)
T ss_dssp CEEEEEEEEECHHH----HTSSEEEEEE-------S-----CCBSEEEEEETTEEEEEECBTTCCEEEECG
T ss_pred CceEEEEEECCHHH----cCCCeEEEEC-------C-----CcceeeEEEECCEEEeeeecCccCEEEECh
Confidence 34677777554433 3455444331 1 3455678899999999999995 9999987
No 8
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.31 E-value=1.2e+02 Score=24.67 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=39.2
Q ss_pred CcEEEEEeecccHHHHHHHHcCCcccccccccccccccCCCCCccceEEEEeCCeEEEEeeCC-ccEEEccC
Q 039955 136 GQATFCSRCVKTYKYTIENTHELLSLQLVFSQANLISINNGFGLANASLSFLGDHLFAICEGD-LPYAVRLT 206 (420)
Q Consensus 136 G~v~Y~~RyV~T~~~~~E~~agr~~f~~~~~~~g~~~~~~~~~~ANT~v~~~~grLlAl~E~~-~Py~id~~ 206 (420)
|.+-|+..|.=.+.+.. +.|+-++.. | -++...+-++.+|+.++..+++ .|+++|++
T Consensus 76 g~~wYrr~f~vp~~~~~--~~~~rv~L~-------f-----~gv~~~a~V~lNG~~vG~~~~~~~p~~~DIT 133 (204)
T d1bhga2 76 GWVWYEREVILPERWTQ--DLRTRVVLR-------I-----GSAHSYAIVWVNGVDTLEHEGGYLPFEADIS 133 (204)
T ss_dssp SEEEEEEEEECCTTTTS--CSSEEEEEE-------E-----SCCCSEEEEECSSSEEEEEESSSCCEEECSS
T ss_pred ceEEEEEEEEEcccccc--cCCCEEEEE-------E-----CCccEeeEEEECCEEeeeeccceeeEEEEch
Confidence 66779999876555431 123333322 1 1356667899999999999988 59999987
No 9
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=8.92 E-value=88 Score=25.34 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCCCeeEEEEcCC
Q 039955 371 SKFLVTDAKSPHLDIEAVVKSTQ 393 (420)
Q Consensus 371 S~l~VlDA~~~~~~pVArv~LP~ 393 (420)
..+.|+|++++ +.|+++++|.
T Consensus 313 ~~v~v~D~~t~--~~i~~i~~p~ 333 (346)
T d1jmxb_ 313 NDLAVFNPDTL--EKVKNIKLPG 333 (346)
T ss_dssp SEEEEEETTTT--EEEEEEECSS
T ss_pred CcEEEEECccC--CEEEEEECCC
Confidence 47999999997 8999999985
No 10
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]}
Probab=8.32 E-value=1.6e+02 Score=24.03 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=38.4
Q ss_pred CCcEEEEEeecccHHHHHHHHcCCcccccccccccccccCCCCCccceEEEEeCCeEEEEeeCC-ccEEEccC
Q 039955 135 QGQATFCSRCVKTYKYTIENTHELLSLQLVFSQANLISINNGFGLANASLSFLGDHLFAICEGD-LPYAVRLT 206 (420)
Q Consensus 135 ~G~v~Y~~RyV~T~~~~~E~~agr~~f~~~~~~~g~~~~~~~~~~ANT~v~~~~grLlAl~E~~-~Py~id~~ 206 (420)
+|.+.|+-.|.=.+.. ..|+-++..+ + ++...+-++.+|++++..|++ .|+++|++
T Consensus 106 ~~~~wY~r~f~ip~~~----~~~~~i~L~f-------~-----gv~~~a~V~vNG~~vG~~~gg~~pf~fDiT 162 (207)
T d1jz8a3 106 NPTGCYSLTFNVDESW----LQEGQTRIIF-------D-----GVNSAFHLWCNGRWVGYGQDSRLPSEFDLS 162 (207)
T ss_dssp CCEEEEEEEEEECHHH----HSSSEEEEEE-------S-----CEESEEEEEETTEEEEEEECTTSCEEEECT
T ss_pred CceEEEEEEeEecccc----cCCCEEEEEe-------c-----ccceEEEEEECCEEEEEecCCCcCEEEeCh
Confidence 4567787777644433 3455554431 1 244556789999999999998 59999987
Done!