BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039959
         (439 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
          Length = 376

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 97/209 (46%), Gaps = 20/209 (9%)

Query: 160 VTGSGTFDGQGA--------SCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVN 211
           + G GT DGQG         S W+         +  Q  P  IQ  +  N  +  ++ +N
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLK-QNTPRLIQINKSKNFTLYNVSLIN 171

Query: 212 SKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGM--I 269
           S  FH   +       +   I  P  + NTDGI    S  + IA S I TGDD V +   
Sbjct: 172 SPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAY 231

Query: 270 RG---SSNVSVKKVTCGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPG 326
           +G   + N+S+     G GHG+SIGS     +   V  + V +  + GT NG+R+K+   
Sbjct: 232 KGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKSDKS 286

Query: 327 APASHASNFMFTDIVMINVSNPIIIDQEY 355
           A A   +   ++++VM NV+ PI+ID  Y
Sbjct: 287 A-AGVVNGVRYSNVVMKNVAKPIVIDTVY 314


>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
           Fusarium Moniliforme
          Length = 349

 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 6/145 (4%)

Query: 240 NTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLGKYTDE 299
           NTDG  IS SD V +  +++   DDCV +  G +N+ V  + C  GHG+SIGS+G  +D 
Sbjct: 165 NTDGFDISSSDHVTLDNNHVYNQDDCVAVTSG-TNIVVSNMYCSGGHGLSIGSVGGKSDN 223

Query: 300 EDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSN-PIIIDQEYCPS 358
             V G+   +  +  +QNG R+K+  GA  +  +N  + +I + N+S   + + Q+Y   
Sbjct: 224 V-VDGVQFLSSQVVNSQNGCRIKSNSGATGT-INNVTYQNIALTNISTYGVDVQQDYL-- 279

Query: 359 NSCKSTSEPSLVKLSNIHFKNISGT 383
           N   +    + VK+SNI F  ++GT
Sbjct: 280 NGGPTGKPTNGVKISNIKFIKVTGT 304


>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
           Colletotrichum Lupini And Its Implications For The
           Interaction With Polygalacturonase- Inhibiting Proteins
 pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
           Colletotrichum Lupini And Its Implications For The
           Interaction With Polygalacturonase- Inhibiting Proteins
 pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
           Colletotrichum Lupini And Its Implications For The
           Interaction With Polygalacturonase- Inhibiting Proteins
 pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
           Colletotrichum Lupini And Its Implications For The
           Interaction With Polygalacturonase- Inhibiting Proteins
 pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
           Colletotrichum Lupini And Its Implications For The
           Interaction With Polygalacturonase- Inhibiting Proteins
 pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
           Colletotrichum Lupini And Its Implications For The
           Interaction With Polygalacturonase- Inhibiting Proteins
 pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
           Colletotrichum Lupini And Its Implications For The
           Interaction With Polygalacturonase- Inhibiting Proteins
          Length = 339

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 137/282 (48%), Gaps = 22/282 (7%)

Query: 147 EEW----VNFQNINGLVVTGSG-TFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSN 201
           +EW    ++F   N  +   SG + D QG+  W   D+K  N   G+  P       + +
Sbjct: 56  KEWEGPLISFSGTNININGASGHSIDCQGSRWW---DSKGSNG--GKTKPKFFYAHSLKS 110

Query: 202 AIVRGITSVNSKGFHYFITGCKNIRLYHLNI--IAPDESP--NTDGIHISQSDVVKIAKS 257
           + ++G+  +N+    + I     + +Y + I   A D +   NTD   +  S  V I+ +
Sbjct: 111 SNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGA 170

Query: 258 YIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQN 317
            +   DDC+ +  G+ N++    TC  GHG+SIGS+G  +D   V  + + N  I  + N
Sbjct: 171 NVKNQDDCLAINSGT-NITFTGGTCSGGHGLSIGSVGGRSDNT-VKTVTISNSKIVNSDN 228

Query: 318 GVRVKTWPGAPASHASNFMFTDIVMINVSN-PIIIDQEYCPSNSCKSTSEPSLVKLSNIH 376
           GVR+KT  GA  S  S   ++ I + N++   I+I+Q+Y   N   + +  + V ++ + 
Sbjct: 229 GVRIKTVSGATGS-VSGVTYSGITLSNIAKYGIVIEQDY--ENGSPTGTPTNGVPITGLT 285

Query: 377 FKNISGTY-NTESGVTLICSSGVPCENIHLIDINLNPTEPET 417
              I+G+  ++ + V ++C+SG  C N     +++   +  T
Sbjct: 286 LSKITGSVASSGTNVYILCASGA-CSNWKWSGVSVTGGKKST 326


>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
           Endopolygalacturonase I From Aspergillus Niger
 pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
           Endopolygalacturonase I From Aspergillus Niger
 pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
           Endopolygalacturonase I From Aspergillus Niger
 pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
           Endopolygalacturonase I From Aspergillus Niger
 pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
           Endopolygalacturonase I From Aspergillus Niger
 pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
           Endopolygalacturonase I From Aspergillus Niger
          Length = 336

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 118/252 (46%), Gaps = 18/252 (7%)

Query: 166 FDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNI 225
            DG G+  W  + T       G+  P  +   +V ++  +GI   N+           N+
Sbjct: 80  IDGDGSRWWDSKGTNG-----GKTKPKFMYIHDVEDSTFKGINIKNTP-VQAISVQATNV 133

Query: 226 RLYHLNIIAPDESPN----TDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVT 281
            L    I   D   N    TDG  IS+S  V I+ + +   DDC+ +  G S +S    T
Sbjct: 134 HLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSGES-ISFTGGT 192

Query: 282 CGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIV 341
           C  GHG+SIGS+G   D+  V  + + + T++ + NGVR+KT         S   +++I 
Sbjct: 193 CSGGHGLSIGSVGGR-DDNTVKNVTISDSTVSNSANGVRIKTIY-KETGDVSEITYSNIQ 250

Query: 342 MINVSN-PIIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTE-SGVTLICSSGVP 399
           +  +++  I+I+Q+Y   N   + +  + + ++++    ++GT   + + V ++C  G  
Sbjct: 251 LSGITDYGIVIEQDY--ENGSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDG-S 307

Query: 400 CENIHLIDINLN 411
           C +     ++L+
Sbjct: 308 CSDWTWSGVDLS 319


>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
 pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
           Aculeatus At Ph4.5
 pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
           Aculeatus At Ph4.5
          Length = 339

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 21/262 (8%)

Query: 158 LVVTGSG--TFDGQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGF 215
           L +TG+   + +G G+  W   D +  N   G+  P       ++N+++ G+  VNS   
Sbjct: 74  LTITGASGHSINGDGSRWW---DGEGGNG--GKTKPKFFAAHSLTNSVISGLKIVNSPVQ 128

Query: 216 HYFITGCKNIRLYHLNIIAPDESPN----TDGIHISQSDVVKIAKSYIGTGDDCVGMIRG 271
            + + G   + L  + I   D   N    TD   I  S  V I+ + +   DDCV +  G
Sbjct: 129 VFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG 188

Query: 272 SSNVSVKKVTCGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASH 331
             N+      C  GHG+SIGS+G  +D   V  +   + TI  + NGVR+KT      S 
Sbjct: 189 E-NIYFSGGYCSGGHGLSIGSVGGRSDNT-VKNVTFVDSTIINSDNGVRIKTNIDTTGS- 245

Query: 332 ASNFMFTDIVMINVSN-PIIIDQEYCPSNSCKSTSEP-SLVKLSNIHFKNISGTYNTESG 389
            S+  + DI + +++   I++ Q Y  ++S  +T  P +   L N+H   +S   N    
Sbjct: 246 VSDVTYKDITLTSIAKYGIVVQQNYGDTSSTPTTGVPITDFVLDNVHGSVVSSGTN---- 301

Query: 390 VTLICSSGVPCENIHLIDINLN 411
           + + C SG  C +    D++++
Sbjct: 302 ILISCGSG-SCSDWTWTDVSVS 322


>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
 pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
          Length = 362

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)

Query: 240 NTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGISIGSLGKYTDE 299
           NTD   +  S  V I K ++   DDC+ +  G  N+     TC  GHG+SIGS+G  ++ 
Sbjct: 178 NTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGE-NIWFTGGTCIGGHGLSIGSVGDRSNN 236

Query: 300 EDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSN-PIIIDQEYCPS 358
             V  + + + T++ ++N VR+KT  GA  S  S   +++IVM  +S+  ++I Q+Y   
Sbjct: 237 V-VKNVTIEHSTVSNSENAVRIKTISGATGS-VSEITYSNIVMSGISDYGVVIQQDY--- 291

Query: 359 NSCKSTSEPS-LVKLSNIHFKNISGTYNTESGVT---LICSSGVPCENIHLIDINLNPTE 414
              K T +P+  V + ++  ++++G+   +SG T   L+C SG  C +    D+ +   +
Sbjct: 292 EDGKPTGKPTNGVTIQDVKLESVTGS--VDSGATEIYLLCGSG-SCSDWTWDDVKVTGGK 348

Query: 415 PET 417
             T
Sbjct: 349 KST 351


>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
           Exopolygalacturonase From Thermotoga Maritima
 pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
           Exopolygalacturonase From Thermotoga Maritima
 pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
           Exopolygalacturonase From Thermotoga Maritima
 pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
           Exopolygalacturonase From Thermotoga Maritima
          Length = 448

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 129/343 (37%), Gaps = 69/343 (20%)

Query: 62  NVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMGPCN 121
           N+L FGA+   + D         +F +A E     +G  RL++P G F+ GP+       
Sbjct: 29  NLLDFGARGDGRTDCSE------SFKRAIEE-LSKQGGGRLIVPEGVFLTGPIHL----- 76

Query: 122 NTPLIVQIQGTIKAITDISEF------PGQGEEWVNFQNI------NGLVVTGSGTFDGQ 169
            + + + ++GTIK I D   +        +G E  N+  +        + +TGSG  DG 
Sbjct: 77  KSNIELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGS 136

Query: 170 G--ASCWKYRDTKN---DNNVPGQR---------------------------LPANIQFV 197
                 W ++  K+      +P Q+                            P+ +QF 
Sbjct: 137 ADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFY 196

Query: 198 EVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKS 257
              N +V G+  +NS  +       +N+ + ++ I +    PN DGI       + I K 
Sbjct: 197 RCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKC 254

Query: 258 YIGTGDDCVGMIRGSS------NVSVKKVTCGPGHGISIGSLGKYTDEEDVVG----INV 307
              TGDD V +  G         V  + +       IS  S G      ++ G    +  
Sbjct: 255 RFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVA 314

Query: 308 RNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPII 350
           RN      +  +R+KT       +  N  F D V +NVS  +I
Sbjct: 315 RNNVYMNVERALRLKT-NSRRGGYMENIFFIDNVAVNVSEEVI 356


>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
          Length = 422

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 152/366 (41%), Gaps = 60/366 (16%)

Query: 59  KVFNVLQFGAKPGDKEDRHNIDSNHMAFVKAFEAACHHEGKARLVIPRGTFVLGPVTFMG 118
           K  N+L +GA   +  D         A   A+ AAC   G   + IP G + L   T++ 
Sbjct: 19  KTCNILSYGAVADNSTDVGP------AITSAW-AACKSGG--LVYIPSGNYALN--TWVT 67

Query: 119 PCNNTPLIVQIQGTIK----------AITDISEFPGQGEEWVNFQNINGLVVTGSG-TFD 167
               +   +Q+ G I           A+TD ++F         F + +   V G G  + 
Sbjct: 68  LTGGSATAIQLDGIIYRTGTASGNMIAVTDTTDFE-------LFSSTSKGAVQGFGYVYH 120

Query: 168 GQGASCWKYRDTKNDNNVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRL 227
            +G                G R+   ++  +V++  V  I  V++  FH+ +  C +  +
Sbjct: 121 AEGTY--------------GARI---LRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEV 163

Query: 228 YHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHG 287
           Y++ I   +E    DGI +  S++  +    +   D+CV +   ++N+ V+ + C    G
Sbjct: 164 YNMAIRGGNEG-GLDGIDVWGSNI-WVHDVEVTNKDECVTVKSPANNILVESIYCNWSGG 221

Query: 288 ISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSN 347
            ++GSLG  TD  D+V    RN     +     +K+  G  +   SN +  + +    + 
Sbjct: 222 CAMGSLGADTDVTDIV---YRNVYTWSSNQMYMIKSNGG--SGTVSNVLLENFIGHGNAY 276

Query: 348 PIIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTY---NTESGVTLICSSGVPCENIH 404
            + ID  +    S  +      V+L+NI  KN  GT     T   + ++CS   PC ++ 
Sbjct: 277 SLDIDGYW----SSMTAVAGDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLT 332

Query: 405 LIDINL 410
           L DI +
Sbjct: 333 LEDIAI 338


>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
           Resolution
 pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
           With A Galacturonate At 1.00 A Resolution.
 pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
           With Two Galacturonate At 1.15 A Resolution
          Length = 335

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 14/195 (7%)

Query: 166 FDGQGASCWKYRDTKNDNNVPGQRLP----ANIQFVEVSNAIVRGITSVNSKGFHYFITG 221
           FDG GA  W  + T N  + P   L        +  EV N+  + I SV     H  + G
Sbjct: 77  FDGNGALYWDGKGTNNGTHKPHPFLKIKGSGTYKKFEVLNSPAQAI-SVGPTDAHLTLDG 135

Query: 222 CKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVT 281
              I +        +   NTDG  +S ++V  I    +   DDC+ +  G+ N+  +   
Sbjct: 136 ---ITVDDFAGDTKNLGHNTDGFDVSANNVT-IQNCIVKNQDDCIAINDGN-NIRFENNQ 190

Query: 282 CGPGHGISIGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIV 341
           C  GHGISIGS+       +VV   ++  T+T +  GVR+K    A ++  S   +    
Sbjct: 191 CSGGHGISIGSIATGKHVSNVV---IKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANT 247

Query: 342 MINVSN-PIIIDQEY 355
           +  ++   ++I Q Y
Sbjct: 248 ISGIAKYGVLISQSY 262


>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase
 pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase
 pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase In Complex With Digalaturonic Acid
 pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
           Exopolygalacturonase In Complex With Digalaturonic Acid
          Length = 608

 Score = 32.0 bits (71), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 13/95 (13%)

Query: 184 NVPGQRLPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIA------PDE 237
           N  GQR  + +    V N  + G T V +  FH    G  N  L + N++A        +
Sbjct: 324 NAYGQRRSSLMTLRGVENVYLAGFT-VRNPAFH----GIMN--LENHNVVANGLIHQTYD 376

Query: 238 SPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGS 272
           + N DGI    S  V +  ++  TGDDC+    G+
Sbjct: 377 ANNGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGT 411


>pdb|2OQD|A Chain A, Crystal Structure Of Bthtx-Ii
 pdb|2OQD|B Chain B, Crystal Structure Of Bthtx-Ii
 pdb|3JR8|A Chain A, Crystal Structure Of Bthtx-Ii (Asp49-Pla2 From Bothrops
           Jararacussu Snake Venom) With Calcium Ions
 pdb|3JR8|B Chain B, Crystal Structure Of Bthtx-Ii (Asp49-Pla2 From Bothrops
           Jararacussu Snake Venom) With Calcium Ions
          Length = 122

 Score = 28.9 bits (63), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 371 KLSNIHFKNISGTYNTESGVTLICSSGVPCE 401
           KL+N   K    +Y+ E+GV +IC  G PCE
Sbjct: 53  KLTNCKPKTDRYSYSRENGV-IICGEGTPCE 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,692,177
Number of Sequences: 62578
Number of extensions: 603374
Number of successful extensions: 1324
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1298
Number of HSP's gapped (non-prelim): 12
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)