BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039963
(578 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 218 bits (555), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 158/542 (29%), Positives = 250/542 (46%), Gaps = 74/542 (13%)
Query: 50 CRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYN-ITLHWHGVNLKGNPWADGPEYV 108
C + + +NGQFPGPT++ GD++++ N+ + +HWHG+ +G PWADG +
Sbjct: 19 CNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASI 78
Query: 109 TQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIR-ATVYGAIIIYPRIGSSYPFPVPNRE 167
+QC I PG ++ Y FT++ GT ++H H R A +YG++I+ P G PF + E
Sbjct: 79 SQCAINPGETFFYNFTVD-NPGTFFYHGHLGMQRSAGLYGSLIVDPPQGKKEPFHY-DGE 136
Query: 168 IPILLGEWWDKNPMDVLMQAIFTGAAP--------------------NVSDAFTINGQPG 207
I +LL +WW ++ + Q + + P +++ + N +P
Sbjct: 137 INLLLSDWWHQS---IHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPC 193
Query: 208 DLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSV 267
L F V +T +RI + L F + NH L VV D +Y + F TS
Sbjct: 194 KLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEADGNYVQPFYTSD 253
Query: 268 IMIAPGQTTNVLLTADQPPXXXXXXXXXXXXXXVAFDNTTTTAILAYKSAPCNAKNGGSN 327
I I G++ +VL+T DQ P A T + P N S
Sbjct: 254 IDIYSGESYSVLITTDQNPSENYWVSVGTR----ARHPNTPPGLTLLNYLP----NSVSK 305
Query: 328 SSAPVFPTLPGFNDTATATAYTAQI-RSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPR 386
P P ++D + +T +I ++ K P + +F +IN
Sbjct: 306 LPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIFLLNTQNVIN-------- 357
Query: 387 CQGPNGTRFAASINNVSFEFP-------TGNSLMQAYFQD-QPGVFTTDFP-PVPPIKFD 437
+IN+VS P +L+ A+ Q+ P VF D+ PP
Sbjct: 358 ------GYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPP---- 407
Query: 438 YTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVT---VEDHPMHLHGHEFYVVGSG 494
T +R+ G +Y+ K G V ++ Q+ +++ E HP HLHGH+F+V+G G
Sbjct: 408 -TNEKTRI------GNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYG 460
Query: 495 FGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAM 554
G F+ ++ NL +PP RNT+ + P GW AIRFVA+NPG+W HCH++ HL G+ +
Sbjct: 461 DGKFSAEEES-SLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGV 519
Query: 555 AF 556
F
Sbjct: 520 VF 521
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 141/521 (27%), Positives = 210/521 (40%), Gaps = 78/521 (14%)
Query: 52 THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ-----YNITLHWHGVNLKGNPWADGPE 106
+ V VNG PGP + GD + I+ + ++HWHG G WADGP
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 107 YVTQCPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIY-PRIGSSYPFPVP 164
++ QCPI PG S+ Y F + Q GT W+H+H S + G ++Y P + + V
Sbjct: 81 FINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 165 NREIPILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEA 224
N + I L +W+ A P +DA ING+ G S E +V
Sbjct: 141 NDDTVITLADWYH-------TAAKLGPRFPGGADATLINGK-GRAPSDSVAELSVIKVTK 192
Query: 225 GETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQ 284
G+ R+++ + N F + HNLT++ VD+ ++ I I Q + +L A+Q
Sbjct: 193 GKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLDANQ 252
Query: 285 PPXXXXXXXXXXXXXXVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTAT 344
V FD +AIL Y AP V PT
Sbjct: 253 -AVDNYWIRANPNFGNVGFDGGINSAILRYDGAPA------------VEPT--------- 290
Query: 345 ATAYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSF 404
T T ++ L+EV + L++ P SP G + N++F
Sbjct: 291 -TNQTTSVKPLNEVDLHP-------------LVSTPVPGSPSSGGVDKAI------NMAF 330
Query: 405 EFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSV 464
F N + + PP P+ ++ L +Y L +S+
Sbjct: 331 NFNGSNFFING---------ASFVPPTVPVLLQILSG-AQTAQDLLPSGSVYVLPSNASI 380
Query: 465 QLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTI--GMPP 522
++ + T+ HP HLHGH F VV S + +N +P R+ + G P
Sbjct: 381 EISFPATAAAPGAPHPFHLHGHTFAVVRSA--------GSTVYNYDNPIFRDVVSTGTPA 432
Query: 523 GG-WVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGD 562
G V IRF NNPG WF+HCH+D HL G A+ + D
Sbjct: 433 AGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMAEDTPD 473
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 140/521 (26%), Positives = 210/521 (40%), Gaps = 78/521 (14%)
Query: 52 THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ-----YNITLHWHGVNLKGNPWADGPE 106
+ V VNG PGP + GD + I+ + ++HWHG G WADGP
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 107 YVTQCPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIY-PRIGSSYPFPVP 164
++ QCPI PG S+ Y F + Q GT W+H+H S + G ++Y P + + V
Sbjct: 81 FINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 165 NREIPILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEA 224
N + I L +W+ A P +DA ING+ G S E +V
Sbjct: 141 NDDTVITLADWYH-------TAAKLGPRFPGGADATLINGK-GRAPSDSVAELSVIKVTK 192
Query: 225 GETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQ 284
G+ R+++ + N F + HNLT++ VD+ ++ I I Q + +L A+Q
Sbjct: 193 GKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLDANQ 252
Query: 285 PPXXXXXXXXXXXXXXVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTAT 344
V FD +AIL Y AP V PT
Sbjct: 253 -AVDNYWIRANPNFGNVGFDGGINSAILRYDGAPA------------VEPT--------- 290
Query: 345 ATAYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSF 404
T T ++ L+EV + L++ P +P G + N++F
Sbjct: 291 -TNQTTSVKPLNEVDLHP-------------LVSTPVPGAPSSGGVDKAI------NMAF 330
Query: 405 EFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSV 464
F N + + PP P+ ++ L +Y L +S+
Sbjct: 331 NFNGSNFFING---------ASFVPPTVPVLLQILSG-AQTAQDLLPSGSVYVLPSNASI 380
Query: 465 QLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTI--GMPP 522
++ + T+ HP HLHGH F VV S + +N +P R+ + G P
Sbjct: 381 EISFPATAAAPGAPHPFHLHGHTFAVVRSA--------GSTVYNYDNPIFRDVVSTGTPA 432
Query: 523 GG-WVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGD 562
G V IRF NNPG WF+HCH+D HL G A+ + D
Sbjct: 433 AGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMAEDTPD 473
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 139/513 (27%), Positives = 210/513 (40%), Gaps = 78/513 (15%)
Query: 52 THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITL-----HWHGVNLKGNPWADGPE 106
+ V VNG PGP + GD + I+ + L HWHG +G WADGP
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPA 80
Query: 107 YVTQCPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIY-PRIGSSYPFPVP 164
++ QCPI PG S+ Y F + Q GT W+H+H S + G ++Y P + + V
Sbjct: 81 FINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 165 NREIPILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEA 224
N + I L +W+ A P +DA ING+ G + E +V
Sbjct: 141 NDDTVITLADWYH-------TAAKLGPRFPAGADATLINGK-GRAPSDTSAELSVIKVTK 192
Query: 225 GETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQ 284
G+ R+++ + + F + HNLT++ VD+S ++ S I I Q + +L A+Q
Sbjct: 193 GKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSIQIFAAQRYSFVLNANQ 252
Query: 285 PPXXXXXXXXXXXXXXVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTAT 344
V F+ +AIL Y AP V PT
Sbjct: 253 -AVDNYWIRANPNFGNVGFNGGINSAILRYDGAPA------------VEPT--------- 290
Query: 345 ATAYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSF 404
T T ++ L+EV + L++ P SP G + N++F
Sbjct: 291 -TNQTTSVKPLNEVNLHP-------------LVSTPVPGSPSSGGVDKAI------NMAF 330
Query: 405 EFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSV 464
F N + + PP P+ ++ L + L +S+
Sbjct: 331 NFNGSNFFING---------ASFVPPSVPVLLQILSG-AQTAQDLLPSGSVXVLPSNASI 380
Query: 465 QLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTI--GMPP 522
++ + T+ HP HLHGH F VV S + +N +P R+ + G P
Sbjct: 381 EISFPATAAAPGAPHPFHLHGHTFAVVRSA--------GSTVYNYSNPIFRDVVSTGTPA 432
Query: 523 GG-WVAIRFVANNPGIWFMHCHLDSHLTWGLAM 554
G V IRF+ NNPG WF+HCH+D HL G A+
Sbjct: 433 AGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 139/516 (26%), Positives = 202/516 (39%), Gaps = 78/516 (15%)
Query: 51 RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ-----YNITLHWHGVNLKGNPWADGP 105
+ + V VNG PGP + GD + IN + ++HWHG KG WADGP
Sbjct: 20 HSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFFQKGTNWADGP 79
Query: 106 EYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIY-PRIGSSYPFPV 163
+V QCPI G S+ Y F+ Q GT W+H+H S G ++Y P S+ + V
Sbjct: 80 AFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVYDPNDPSANLYDV 139
Query: 164 PNREIPILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVE 223
N I L +W+ + A P +DA INGQ G + V
Sbjct: 140 DNLNTVITLTDWYHTAAQN-------GPAKPGGADATLINGQ-GRGPSSPSADLAVISVT 191
Query: 224 AGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTAD 283
AG+ R+++ + + F + H +T++ VD+ + I I Q + +L A+
Sbjct: 192 AGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLVVLKIQIYAAQRYSFILNAN 251
Query: 284 QPPXXXXXXXXXXXXXXVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTA 343
Q V F N +AIL Y A T
Sbjct: 252 Q-AVNNYWIRANPNQGNVGFTNGINSAILRYSGAAA----------------------TQ 288
Query: 344 TATAYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVS 403
T+ T+ ++ L + + L + P SP G N +IN +
Sbjct: 289 PTTSQTSSVQPLDQTNLHP-------------LTATAVPGSPVAGGVN-----LAINQ-A 329
Query: 404 FEFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSS 463
F F N + + PP P+ L +Y L ++
Sbjct: 330 FNFNGTNHFVDG---------ASFVPPTVPVLSQIVSGAQSAA-DLLASGLVYSLPSDAN 379
Query: 464 VQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTI--GMP 521
+++ + TS HP HLHGH F VV S + +N DP R+T+ G P
Sbjct: 380 IEISFPATSAAAGGPHPFHLHGHAFAVVRSA--------GSTTYNYNDPIFRDTVSTGTP 431
Query: 522 PGG-WVAIRFVANNPGIWFMHCHLDSHLTWGLAMAF 556
V IRF NNPG WF+HCH+D HL G A+ F
Sbjct: 432 AANDNVTIRFKTNNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 210/540 (38%), Gaps = 94/540 (17%)
Query: 41 IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ-----YNITLHWHGVN 95
+ PV + + VNG FP P + + GD + ++ + ++HWHG
Sbjct: 10 VANAPVSPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFF 69
Query: 96 LKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIY-P 153
G WADGP +V QCPI G S+ Y F + Q GT W+H+H S + G ++Y P
Sbjct: 70 QAGTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 154 RIGSSYPFPVPNREIPILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCS 213
+ + + V N I L +W+ A P +DA ING L R +
Sbjct: 130 KDPHASRYDVDNESTVITLTDWYHT-------AARLGPRFPLGADATLING----LGRSA 178
Query: 214 RRETVRF---QVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMI 270
T V+ G+ R+++ + + F + HNLTV+ VD ++ I I
Sbjct: 179 STPTAALAVINVQHGKRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQI 238
Query: 271 APGQTTNVLLTADQPPXXXXXXXXXXXXXXVAFDNTTTTAILAYKSAPCNAKNGGSNSSA 330
Q + +L A+Q V F +AIL Y+ AP +S
Sbjct: 239 FAAQRYSFVLNANQ-TVGNYWIRANPNFGTVGFAGGINSAILRYQGAPVAEPTTTQTTS- 296
Query: 331 PVFPTLPGFNDTATATAYTAQIRSLHEVKVPTV-----IDEDLFFTVGLGLINCSNPNSP 385
V P + + L + VP +D+ L
Sbjct: 297 -VIPLI------------ETNLHPLARMPVPGSPTPGGVDKALNLAFNF----------- 332
Query: 386 RCQGPNGTRFAASINNVSFEFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRV 445
NGT F INN SF PT L+Q + ++
Sbjct: 333 -----NGTNFF--INNASFTPPTVPVLLQIL------------------------SGAQT 361
Query: 446 LWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTP 505
L +Y L S++++ T++ HP HLHGH F VV S +
Sbjct: 362 AQDLLPAGSVYPLPAHSTIEITLPATALAPGAPHPFHLHGHAFAVVRSA--------GST 413
Query: 506 KFNLIDPPRRNTI--GMPPGG-WVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGD 562
+N DP R+ + G P G V IRF +NPG WF+HCH+D HL G A+ F + D
Sbjct: 414 TYNYNDPIFRDVVSTGTPAAGDNVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVFAEDVAD 473
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 138/515 (26%), Positives = 202/515 (39%), Gaps = 91/515 (17%)
Query: 56 VTVNGQFPGPTLQVRDGDTLIITTINRAQYNITL-----HWHGVNLKGNPWADGPEYVTQ 110
+ VN FP P + GD + +N+ + L HWHG KG WADGP ++ Q
Sbjct: 25 IVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTNWADGPAFINQ 84
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIY-PRIGSSYPFPVPNREI 168
CPI G S+ Y F + GQ GT W+H+H S + G ++Y P + + V +
Sbjct: 85 CPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHANLYDVDDEST 144
Query: 169 PILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRF---QVEAG 225
I L +W+ + A P +D+ ING L R + T V G
Sbjct: 145 VITLADWYH-------VAAKLGPRFPKGADSTLING----LGRSTSTPTADLAVISVTKG 193
Query: 226 ETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQP 285
+ R+++ + + F + +H LTV+ D T+ + I I Q + +L A+Q
Sbjct: 194 KRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQIFAAQRYSFVLNANQ- 252
Query: 286 PXXXXXXXXXXXXXXVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTATA 345
F + +AIL Y A P P N T T
Sbjct: 253 DVDNYWIRANPNFGTTGFADGVNSAILRYDDAD---------------PVEPVTNQTGTT 297
Query: 346 TAYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASIN-NVSF 404
+ L + VP N T+ A +N N++F
Sbjct: 298 LLLETDLHPLTSMPVPG----------------------------NPTQGGADLNLNMAF 329
Query: 405 EFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYT--GNVSRVLWQPLKGTKLYKLKFGS 462
F N + FT PP P+ N ++ L L +Y L S
Sbjct: 330 NFDGTNFFINGE------SFT---PPTVPVLLQIISGANTAQDL---LPSGSVYSLPSNS 377
Query: 463 SVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTI--GM 520
S+++ + T+ HP HLHGH F VV S + +N DP R+ + G
Sbjct: 378 SIEITFPATTAAPGAPHPFHLHGHVFAVVRSA--------GSTSYNYDDPVWRDVVSTGT 429
Query: 521 PPGG-WVAIRFVANNPGIWFMHCHLDSHLTWGLAM 554
P G V IRF +NPG WF+HCH+D HL G A+
Sbjct: 430 PQAGDNVTIRFQTDNPGPWFLHCHIDFHLDAGFAV 464
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 138/511 (27%), Positives = 198/511 (38%), Gaps = 77/511 (15%)
Query: 52 THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ-----YNITLHWHGVNLKGNPWADGPE 106
+ + VN FP P + GD + I+ + ++HWHG G WADGP
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 107 YVTQCPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIY-PRIGSSYPFPVP 164
+V QCPI G ++ Y F + Q GT W+H+H S + G I++Y P + + V
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHASLYDVD 140
Query: 165 NREIPILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEA 224
+ I L +W+ A GA +DA ING G + V
Sbjct: 141 DDSTVITLADWY--------HLAAKVGAPVPTADATLINGL-GRSAATLAADLAVITVTK 191
Query: 225 GETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQ 284
G+ R+++ + + F + H+LTV+ D+ K + + I Q + +L ADQ
Sbjct: 192 GKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQ 251
Query: 285 PPXXXXXXXXXXXXXXVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTAT 344
F T +AIL Y A APV PT
Sbjct: 252 -DVDNYWIRALPNSGTQNFAGGTNSAILRYDGA------------APVEPT--------- 289
Query: 345 ATAYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSF 404
T+ T L E + T L + P SP P G A N++F
Sbjct: 290 -TSQTPSTNPLVESALTT-------------LKGTAAPGSPT---PGGVDLAL---NMAF 329
Query: 405 EFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSV 464
F GN F FT PP P+ L +Y L + +
Sbjct: 330 GFAGGN------FTINGASFT---PPTVPVLLQILSGAQSAA-DLLPAGSVYSLPANADI 379
Query: 465 QLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGM-PPG 523
++ T+ HP HLHGH F VV S + +N +P R+ + PG
Sbjct: 380 EISLPATAAAPGFPHPFHLHGHVFAVVRSA--------GSSTYNYANPVYRDVVSTGAPG 431
Query: 524 GWVAIRFVANNPGIWFMHCHLDSHLTWGLAM 554
V IRF +NPG WF+HCH+D HL G A+
Sbjct: 432 DNVTIRFRTDNPGPWFLHCHIDFHLEAGFAV 462
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 138/511 (27%), Positives = 198/511 (38%), Gaps = 77/511 (15%)
Query: 52 THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ-----YNITLHWHGVNLKGNPWADGPE 106
+ + VN FP P + GD + I+ + ++HWHG G WADGP
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 107 YVTQCPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIY-PRIGSSYPFPVP 164
+V QCPI G ++ Y F + Q GT W+H+H S + G I++Y P + + V
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHASLYDVD 140
Query: 165 NREIPILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEA 224
+ I L +W+ A GA +DA ING G + V
Sbjct: 141 DDSTVITLADWY--------HLAAKVGAPVPTADATLINGL-GRSAATLAADLAVITVTK 191
Query: 225 GETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQ 284
G+ R+++ + + F + H+LTV+ D+ K + + I Q + +L ADQ
Sbjct: 192 GKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQ 251
Query: 285 PPXXXXXXXXXXXXXXVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTAT 344
F T +AIL Y A APV PT
Sbjct: 252 -DVDNYWIRALPNSGTQNFAGGTNSAILRYDGA------------APVEPT--------- 289
Query: 345 ATAYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSF 404
T+ T L E + T L + P SP P G A N++F
Sbjct: 290 -TSQTPSTNPLVESALTT-------------LKGTAAPGSPT---PGGVDLAL---NMAF 329
Query: 405 EFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSV 464
F GN F FT PP P+ L +Y L + +
Sbjct: 330 GFAGGN------FTINGASFT---PPTVPVLLQILSGAQSAA-DLLPAGSVYSLPANADI 379
Query: 465 QLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGM-PPG 523
++ T+ HP HLHGH F VV S + +N +P R+ + PG
Sbjct: 380 EISLPATAAAPGFPHPFHLHGHVFAVVRSA--------GSSTYNYANPVYRDVVSTGAPG 431
Query: 524 GWVAIRFVANNPGIWFMHCHLDSHLTWGLAM 554
V IRF +NPG WF+HCH+D HL G A+
Sbjct: 432 DNVTIRFRTDNPGPWFLHCHIDFHLEAGFAV 462
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 137/511 (26%), Positives = 199/511 (38%), Gaps = 77/511 (15%)
Query: 52 THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ-----YNITLHWHGVNLKGNPWADGPE 106
+ + VN FP P + GD + I+ + ++HWHG G WADGP
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 107 YVTQCPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIY-PRIGSSYPFPVP 164
+V QCPI G ++ Y F + Q GT W+H+H S + G I++Y P+ + V
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPQDPHKSLYDVD 140
Query: 165 NREIPILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEA 224
+ I L +W+ A G+ +DA ING G + V
Sbjct: 141 DDSTVITLADWY--------HLAAKVGSPVPTADATLINGL-GRSIDTLNADLAVITVTK 191
Query: 225 GETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQ 284
G+ R+++ + + F + H+LTV+ D+ K + I I Q + +L ADQ
Sbjct: 192 GKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDSIQIFAAQRYSFVLNADQ 251
Query: 285 PPXXXXXXXXXXXXXXVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTAT 344
FD +AIL Y A APV PT
Sbjct: 252 -DVGNYWIRALPNSGTRNFDGGVNSAILRYDGA------------APVEPT--------- 289
Query: 345 ATAYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSF 404
T+ T L E + T L + P SP P G A N++F
Sbjct: 290 -TSQTPSTNPLVESALTT-------------LEGTAAPGSP---APGGVDLAL---NMAF 329
Query: 405 EFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSV 464
F G F FT PP P+ ++ L +Y L + +
Sbjct: 330 GFAGGK------FTINGASFT---PPTVPVLLQILSG-AQSAQDLLPSGSVYSLPANADI 379
Query: 465 QLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGM-PPG 523
++ T+ HP HLHGH F VV S + +N +P R+ + PG
Sbjct: 380 EISLPATAAAPGFPHPFHLHGHTFAVVRSA--------GSSTYNYENPVYRDVVSTGSPG 431
Query: 524 GWVAIRFVANNPGIWFMHCHLDSHLTWGLAM 554
V IRF +NPG WF+HCH+D HL G A+
Sbjct: 432 DNVTIRFRTDNPGPWFLHCHIDFHLEAGFAV 462
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 136/513 (26%), Positives = 207/513 (40%), Gaps = 78/513 (15%)
Query: 52 THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITL-----HWHGVNLKGNPWADGPE 106
+ V VNG PGP + GD + I+ + L HWHG +G WADGP
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPA 80
Query: 107 YVTQCPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIY-PRIGSSYPFPVP 164
++ QCPI PG S+ Y F + Q GT W+H+H S + G ++Y P + + V
Sbjct: 81 FINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 165 NREIPILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEA 224
N + I L +W+ A A PN +D+ ING+ G S + V
Sbjct: 141 NDDTTITLADWYH-------TAAKLGPAFPNGADSTLINGK-GRAPSDSSAQLSVVSVTK 192
Query: 225 GETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQ 284
G+ R+++ + + F + HN T++ D+ ++ +T I I Q + L A+Q
Sbjct: 193 GKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDSIQIFAAQRYSFTLNANQ 252
Query: 285 PPXXXXXXXXXXXXXXVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTAT 344
V F+ +AIL Y AP V PT
Sbjct: 253 A-VDNYWIRANPNFGNVGFNGGINSAILRYDGAPA------------VEPT--------- 290
Query: 345 ATAYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSF 404
T + + L+E + ++ + P SP G + N++F
Sbjct: 291 -TNQSTSTQPLNETNLHPLVSTPV-------------PGSPAAGGVDKAI------NMAF 330
Query: 405 EFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSV 464
F N + FT PP P+ ++ L + L +S+
Sbjct: 331 NFNGSNFFING------ASFT---PPSVPVLLQILSG-AQTAQDLLPSGSVXTLPSNASI 380
Query: 465 QLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTI--GMPP 522
++ + T+ HP HLHGH F VV S + +N +P R+ + G P
Sbjct: 381 EISFPATAAAPGAPHPFHLHGHVFAVVRSA--------GSTVYNYSNPIFRDVVSTGTPA 432
Query: 523 GG-WVAIRFVANNPGIWFMHCHLDSHLTWGLAM 554
G V IRF+ NNPG WF+HCH+D HL G A+
Sbjct: 433 AGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 147/534 (27%), Positives = 215/534 (40%), Gaps = 101/534 (18%)
Query: 52 THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ-----YNITLHWHGVNLKGNPWADGPE 106
T V NG FPGP + GD I I+ T+HWHG+ G WADGP
Sbjct: 21 TRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGLFQHGTNWADGPA 80
Query: 107 YVTQCPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIY-PRIGSSYPFPVP 164
+V QCPI G S+ Y FT+ Q GT W+H+H S + G +++Y P + + V
Sbjct: 81 FVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDPSDPYASMYDVD 140
Query: 165 NREIPILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEA 224
+ I L +W+ A A P +D+ ING G + + VE
Sbjct: 141 DDTTVITLSDWYHT-------AAKLGPAFPPNADSVLINGL-GRFAGGNASDLAVITVEQ 192
Query: 225 GETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQ 284
+ R+++ + + F + HN+T++ VD + I I Q + +L A Q
Sbjct: 193 NKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSIQIFASQRYSFVLNATQ 252
Query: 285 PPXXXXXXXXXXXXXXVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTAT 344
+ DN AI + GG NS+ + + TA
Sbjct: 253 -----------------SVDNYWIRAI---PNTGTIDTTGGLNSAILRYSGADIVDPTAN 292
Query: 345 ATAYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGP----------NGTR 394
AT V +++ DL + L + + P P G NGT
Sbjct: 293 AT-----------TSVIPLVETDL-----VPLDSPAAPGDPVVGGVDLAMNLDFSFNGTN 336
Query: 395 FAASINNVSFEFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTK 454
F INN + PT L+Q Q +D P TG+V + PL T
Sbjct: 337 FF--INNETLIPPTVPVLLQILSGAQSA---SDLLP--------TGSVYTL---PLNST- 379
Query: 455 LYKLKFGSSVQLVWQDTSIVTVEDHP-----MHLHGHEFYVVGSGFGNFNPSTDTPKFNL 509
++L + T++ V + P HLHGH F VV S + +N
Sbjct: 380 ---------IELSFPITTVNGVTNAPGAPHPFHLHGHAFSVVRSA--------GSSDYNY 422
Query: 510 IDPPRRNTIGM-PPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGD 562
++P RR+T+ PG V IRF +N G WF+HCH+D HL G A+ F + D
Sbjct: 423 VNPVRRDTVSTGNPGDNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIVFAEDTPD 476
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 132/509 (25%), Positives = 208/509 (40%), Gaps = 75/509 (14%)
Query: 56 VTVNGQFPGPTLQVRDGDTLIITTINR-----AQYNITLHWHGVNLKGNPWADGPEYVTQ 110
V G FPGP + GD I T N+ + ++HWHG KG WADGP ++TQ
Sbjct: 26 VNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQ 85
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIY-PRIGSSYPFPVPNREI 168
CPI G S++Y F + G GT W+H+H + + G ++Y P + + V +
Sbjct: 86 CPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTT 145
Query: 169 PILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETV 228
I L +W+ VL + + G A +D+ I+G + VE G+
Sbjct: 146 IITLADWY-----HVLAKEMGAGGAI-TADSTLIDGLGRTHVNVAAVPLSVITVEVGKRY 199
Query: 229 LLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPXX 288
+R+++ + + F + H++T++ D ++ + I I Q + +L A+Q P
Sbjct: 200 RMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQ-PVG 258
Query: 289 XXXXXXXXXXXXVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTATATAY 348
FD +AIL Y G+ ++ PV T +T +
Sbjct: 259 NYWIRANPNSGGEGFDGGINSAILRYD---------GATTADPV---------TVASTVH 300
Query: 349 TAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSFEFPT 408
T +I+ DL G+ P +P G + N+S F
Sbjct: 301 TK-----------CLIETDLHPLSRNGV-----PGNPHQGGADCNL------NLSLGFAC 338
Query: 409 GNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVW 468
GN ++ GV T PP P+ + L + L S++++
Sbjct: 339 GNFVIN-------GVSFT--PPTVPVLLQICSGANTAA-DLLPSGSVISLPSNSTIEIAL 388
Query: 469 QDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPP-GGWVA 527
+ HP HLHGH+F V + S N DP R+ + + G V
Sbjct: 389 P--AGAAGGPHPFHLHGHDFAV--------SESASNSTSNYDDPIWRDVVSIGGVGDNVT 438
Query: 528 IRFVANNPGIWFMHCHLDSHLTWGLAMAF 556
IRF +NPG WF+HCH+D HL G A+ F
Sbjct: 439 IRFCTDNPGPWFLHCHIDWHLDAGFAIVF 467
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 139/527 (26%), Positives = 213/527 (40%), Gaps = 104/527 (19%)
Query: 52 THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ-----YNITLHWHGVNLKGNPWADGPE 106
T + VNG GP ++ D + +N ++HWHG+ +G WADG +
Sbjct: 22 TRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGAD 80
Query: 107 YVTQCPIQPGRSYTYQFTIEGQEGTLWWHAH--SRWIRATVYGAIIIYPRIGSSYPFPVP 164
V QCPI PG ++ Y+FT G GT W+H+H +++ + G ++IY
Sbjct: 81 GVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDG-LRGPMVIYDDNDPHAALYDE 139
Query: 165 NREIPIL-LGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVE 223
+ E I+ L +W+ + +I A P DA ING+ G E VE
Sbjct: 140 DDENTIITLADWY-----HIPAPSIQGAAQP---DATLINGK-GRYVGGPAAELSIVNVE 190
Query: 224 AGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTAD 283
G+ +R+I+ + + F + H LT++ VD T+ + + I GQ + +L A+
Sbjct: 191 QGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDAN 250
Query: 284 QPPXX---XXXXXXXXXXXXVAFDNTTTTAILAYKSA----------PCNAKNGGSNSSA 330
QP F N +AIL Y A P A+ ++ A
Sbjct: 251 QPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSANPNPAQLNEADLHA 310
Query: 331 PVFPTLPGFNDTATATAYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGP 390
+ P PG + P D +L F +G
Sbjct: 311 LIDPAAPG-------------------IPTPGAADVNLRFQLGF---------------- 335
Query: 391 NGTRFAASINNVSFEFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPL 450
+G RF +IN ++E P+ +L+Q Q D P
Sbjct: 336 SGGRF--TINGTAYESPSVPTLLQIMSGAQS---ANDLLPA------------------- 371
Query: 451 KGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLI 510
+Y+L V+LV + V HP HLHGH F VV S + +N +
Sbjct: 372 --GSVYELPRNQVVELVV--PAGVLGGPHPFHLHGHAFSVV--------RSAGSSTYNFV 419
Query: 511 DPPRRNTIGMP-PGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAF 556
+P +R+ + + G V IRFV +NPG WF HCH++ HL GLA+ F
Sbjct: 420 NPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVF 466
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 139/527 (26%), Positives = 213/527 (40%), Gaps = 104/527 (19%)
Query: 52 THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ-----YNITLHWHGVNLKGNPWADGPE 106
T + VNG GP ++ D + +N ++HWHG+ +G WADG +
Sbjct: 22 TRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGAD 80
Query: 107 YVTQCPIQPGRSYTYQFTIEGQEGTLWWHAH--SRWIRATVYGAIIIYPRIGSSYPFPVP 164
V QCPI PG ++ Y+FT G GT W+H+H +++ + G ++IY
Sbjct: 81 GVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDG-LRGPMVIYDDNDPHAALYDE 139
Query: 165 NREIPIL-LGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVE 223
+ E I+ L +W+ + +I A P DA ING+ G E VE
Sbjct: 140 DDENTIITLADWY-----HIPAPSIQGAAQP---DATLINGK-GRYVGGPAAELSIVNVE 190
Query: 224 AGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTAD 283
G+ +R+I+ + + F + H LT++ VD T+ + + I GQ + +L A+
Sbjct: 191 QGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDAN 250
Query: 284 QPPXX---XXXXXXXXXXXXVAFDNTTTTAILAYKSA----------PCNAKNGGSNSSA 330
QP F N +AIL Y A P A+ ++ A
Sbjct: 251 QPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSANPNPAQLNEADLHA 310
Query: 331 PVFPTLPGFNDTATATAYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGP 390
+ P PG + P D +L F +G
Sbjct: 311 LIDPAAPG-------------------IPTPGAADVNLRFQLGF---------------- 335
Query: 391 NGTRFAASINNVSFEFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPL 450
+G RF +IN ++E P+ +L+Q Q D P
Sbjct: 336 SGGRF--TINGTAYESPSVPTLLQIMSGAQS---ANDLLPA------------------- 371
Query: 451 KGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLI 510
+Y+L V+LV + V HP HLHGH F VV S + +N +
Sbjct: 372 --GSVYELPRNQVVELVV--PAGVLGGPHPFHLHGHAFSVV--------RSAGSSTYNFV 419
Query: 511 DPPRRNTIGMP-PGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAF 556
+P +R+ + + G V IRFV +NPG WF HCH++ HL GLA+ F
Sbjct: 420 NPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVF 466
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 134/500 (26%), Positives = 204/500 (40%), Gaps = 87/500 (17%)
Query: 67 LQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE 126
Q+ D L + RA ++HWHG G DGP +V QCPI P S+ Y F +
Sbjct: 65 FQINVIDQLTDANMRRAT---SIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVP 121
Query: 127 GQEGTLWWHAH-SRWIRATVYGAIIIY-PRIGSSYPFPVPNREIPILLGEWWDKNPMDVL 184
GQ GT W+H+H S + GA ++Y P + V + I + +W+ L
Sbjct: 122 GQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVDDASTVITIADWYHS-----L 176
Query: 185 MQAIF--TGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELF 242
+F AP D ING + S + V++G+ RI++ +
Sbjct: 177 STVLFPNPNKAPPAPDTTLINGLGRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYA 236
Query: 243 FGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPXXXXXXXXXXXXXXVA 302
F + H +TV+ VD + + + I GQ +V++ A+Q
Sbjct: 237 FSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEANQ------------------ 278
Query: 303 FDNTTTTAILAY--KSAPCNAKN---GGSNSSAPVFPTLPGFNDTATATAYTAQIRSLHE 357
A+ Y ++ P N +N GG NS+ +F + A A T+Q
Sbjct: 279 -------AVGNYWIRANPSNGRNGFTGGINSA--IFR----YQGAAVAEPTTSQ------ 319
Query: 358 VKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSFEFPTGNSLMQAYF 417
T ++E LI NP +P P G +++ G + A F
Sbjct: 320 -NSGTALNE-------ANLIPLINPGAPGNPVPGGA-------DINLNLRIGRNATTADF 364
Query: 418 QDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVE 477
F PP P+ V+ L G + L +++ SI
Sbjct: 365 TINGAPF---IPPTVPVLLQILSGVTNP-NDLLPGGAVISLPANQVIEI-----SIPGGG 415
Query: 478 DHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGG-WVAIRFVANNPG 536
+HP HLHGH F VV + P + +N ++P RR+ + + GG V RFV +NPG
Sbjct: 416 NHPFHLHGHNFDVVRT------PGSSV--YNYVNPVRRDVVSIGGGGDNVTFRFVTDNPG 467
Query: 537 IWFMHCHLDSHLTWGLAMAF 556
WF+HCH+D HL GLA+ F
Sbjct: 468 PWFLHCHIDWHLEAGLAVVF 487
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 114/270 (42%), Gaps = 16/270 (5%)
Query: 56 VTVNGQFPGPTLQVRDGDTLIITTINRAQYNITL-----HWHGVNLKGNPWADGPEYVTQ 110
V VNG P P + GD + I++ + L HWHG +G WADGP +V Q
Sbjct: 25 VVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFFQQGTNWADGPAFVNQ 84
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIY-PRIGSSYPFPVPNREI 168
CPI G S+ Y F + Q GT W+H+H S + G ++Y P + + + N +
Sbjct: 85 CPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASLYDIDNDDT 144
Query: 169 PILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETV 228
I L +W+ + A P SD+ ING G + + +V G+
Sbjct: 145 VITLADWYH-------VAAKLGPRFPFGSDSTLINGL-GRTTGIAPSDLAVIKVTQGKRY 196
Query: 229 LLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPXX 288
R+++ + + F + NH +T++ D+ T+ I I Q + +L A Q P
Sbjct: 197 RFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDSIQIFAAQRYSFVLDASQ-PVD 255
Query: 289 XXXXXXXXXXXXVAFDNTTTTAILAYKSAP 318
F +AIL Y AP
Sbjct: 256 NYWIRANPAFGNTGFAGGINSAILRYDGAP 285
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 62/131 (47%), Gaps = 19/131 (14%)
Query: 445 VLWQPLKGTK----------LYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSG 494
VL Q L G + ++ L SS+++ + T+ HP HLHGH F VV S
Sbjct: 351 VLLQILSGAQAAQDLVPEGSVFVLPSNSSIEISFPATANAPGFPHPFHLHGHAFAVVRSA 410
Query: 495 FGNFNPSTDTPKFNLIDPPRRNTIGM-PPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLA 553
+ +N +P R+ + PG V IRF NNPG WF+HCH+D HL G A
Sbjct: 411 GSSV--------YNYDNPIFRDVVSTGQPGDNVTIRFETNNPGPWFLHCHIDFHLDAGFA 462
Query: 554 MAFLVENGDEE 564
+ + D +
Sbjct: 463 VVMAEDTPDTK 473
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 20/243 (8%)
Query: 52 THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNIT-LHWHGVNLKGNPWADGPEYVTQ 110
T + +T NG PGP + GD LII N ++N T +HWHG+ G+ DG VTQ
Sbjct: 85 TRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQ 144
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIYPRIGSSYPFPVPNREIP 169
CPI PG + TY+F + Q GT W+H+H S ++G +II + Y + ++
Sbjct: 145 CPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIINGPATADY-----DEDVG 198
Query: 170 ILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRR---------ETVRF 220
++ + W + + GA P + + +NG + + CS +
Sbjct: 199 VIFLQDWAHESVFEIWDTARLGAPPALENTL-MNGT--NTFDCSASTDPNCVGGGKKFEL 255
Query: 221 QVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLL 280
G LR+IN ++ F + NH LTV+ D ++T ++I GQ +V++
Sbjct: 256 TFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYDVIV 315
Query: 281 TAD 283
A+
Sbjct: 316 EAN 318
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 479 HPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIW 538
HP+HLHGH+F++V FN KFNL++PPRR+ +P G++AI F +NPG W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 539 FMHCHLDSHLTWGLAMAFL 557
+HCH+ H + G+AM F+
Sbjct: 523 LLHCHIAWHASEGMAMQFV 541
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 20/243 (8%)
Query: 52 THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNIT-LHWHGVNLKGNPWADGPEYVTQ 110
T + +T NG PGP + GD LII N ++N T +HWHG+ G+ DG VTQ
Sbjct: 85 TRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQ 144
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIYPRIGSSYPFPVPNREIP 169
CPI PG + TY+F + Q GT W+H+H S ++G +II + Y + ++
Sbjct: 145 CPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIINGPATADY-----DEDVG 198
Query: 170 ILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRR---------ETVRF 220
++ + W + + GA P + + +NG + + CS +
Sbjct: 199 VIFLQDWAHESVFEIWDTARLGAPPALENTL-MNGT--NTFDCSASTDPNCVGGGKKFEL 255
Query: 221 QVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLL 280
G LR+IN ++ F + NH LTV+ D ++T ++I GQ +V++
Sbjct: 256 TFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYDVIV 315
Query: 281 TAD 283
A+
Sbjct: 316 EAN 318
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 479 HPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIW 538
HP+HLHGH+F++V FN KFNL++PPRR+ +P G++AI F +NPG W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 539 FMHCHLDSHLTWGLAMAFL 557
+HCH+ H + GLAM F+
Sbjct: 523 LLHCHIAWHASEGLAMQFV 541
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 21/231 (9%)
Query: 56 VTVNGQFPGPTLQVRDGDTLIITTIN-RAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQ 114
+T NGQFP P + V GD + I N N ++H+HG+ G DG ++TQCPI
Sbjct: 25 ITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIA 84
Query: 115 PGRSYTYQFTIEGQEGTLWWHAHSR-WIRATVYGAIIIYPRIGSSYPFPVPNREIPILLG 173
PG + Y FT++ GT W+H+H+ + G II S+P+ + E+ + L
Sbjct: 85 PGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIK---DDSFPYDY-DEELSLSLS 140
Query: 174 EWWDKNPMDVL--MQAIF--TGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVL 229
EW+ D+ +++ TGA P P +L + + ++V+ T L
Sbjct: 141 EWYHDLVTDLTKSFMSVYNPTGAEP----------IPQNLI-VNNTMNLTWEVQPDTTYL 189
Query: 230 LRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLL 280
LRI+N +F + +H +TVV +D T+ T ++ I Q VL+
Sbjct: 190 LRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLV 240
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 451 KGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVV----------GSGFGNFNP 500
T + L+ V++V + T HP HLHGH F + G +F+P
Sbjct: 367 SNTHTFILEKDEIVEIVLNNQDTGT---HPFHLHGHAFQTIQRDRTYDDALGEVPHSFDP 423
Query: 501 STDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSH 547
+ P F P RR+T+ + P IRF A+NPG+WF HCH++ H
Sbjct: 424 D-NHPAFPEY-PMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWH 468
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 109/245 (44%), Gaps = 29/245 (11%)
Query: 51 RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQ 110
R +T NGQ P P + V +GD + + N T+HWHG+ +G +DG + TQ
Sbjct: 20 RDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQ 79
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAH----SRWIRATVYGAIIIYPRIGSSYPFPVPN- 165
I+PG ++TY+F E GT+W+H H ++G +I+ P+ P P+
Sbjct: 80 HAIEPGDTFTYKFKAE-PAGTMWYHCHVNVNEHVTMRGMWGPLIVEPK----NPLPIEKT 134
Query: 166 --REIPILLGEW---WDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRF 220
++ ++L +W W P + G +V D +TIN + S ET
Sbjct: 135 VTKDYILMLSDWVSSWANKPGE-------GGIPGDVFDYYTINAK-------SFPETQPI 180
Query: 221 QVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLL 280
+V+ G+ + LR+I A + + + K ++I PG+ +V+L
Sbjct: 181 RVKKGDVIRLRLIGAGDHVHAIHTHGHISQIAFKDGFPLDKPIKGDTVLIGPGERYDVIL 240
Query: 281 TADQP 285
D P
Sbjct: 241 NMDNP 245
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 479 HPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIW 538
H +H HGH + F + F L P + +T+ + PG + +NPG+W
Sbjct: 200 HAIHTHGH---ISQIAFKD--------GFPLDKPIKGDTVLIGPGERYDVILNMDNPGLW 248
Query: 539 FMHCHLDSHLTWG 551
+H H+D+H T G
Sbjct: 249 MIHDHVDTHTTNG 261
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 120/265 (45%), Gaps = 11/265 (4%)
Query: 58 VNGQFPGPTLQVRDGDTLIITTINRAQYNIT-LHWHGVNLKGNPWADGPEYVTQCPIQP- 115
VN + GPT++ GD + +T IN + N T +HWHG+ GN + DG VT+CPI P
Sbjct: 101 VNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFNDGANGVTECPIPPK 160
Query: 116 GRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIYPRIGSSYPFPVPNREIPILLGE 174
G TY+F Q GT W+H+H S V G I I +S P+ + P++ +
Sbjct: 161 GGRKTYKFRAT-QYGTSWYHSHFSAQYGNGVVGTIQI--DGPASLPYDIDLGVFPLM--D 215
Query: 175 WWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIIN 234
++ ++ +++ GA P SD NG + + G+ LRIIN
Sbjct: 216 YYYRSADELVHFTQSNGAPP--SDNVLFNGT-ARHPETGAGQWYNVTLTPGKRHRLRIIN 272
Query: 235 AAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPXXXXXXXX 294
+ + + HN+TV+ D AF+ S + +A GQ +V + A+ P
Sbjct: 273 TSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAVGQRYDVTIDANSPVGNYWFNVT 332
Query: 295 XXXXXXVAFDNTTTTAILAYKSAPC 319
+ +N AI Y+ AP
Sbjct: 333 FGDGLCGSSNNKFPAAIFRYQGAPA 357
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 479 HPMHLHGHEFYVVGSGFGN---------FNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIR 529
HPMHLHGH+F V+G F+P+ D P+ +P RR+ +P GGW+ +
Sbjct: 472 HPMHLHGHDFLVLGRSPDELPSAGVRHIFDPAKDLPRLKGNNPVRRDVTMLPAGGWLLLA 531
Query: 530 FVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDEELQ 566
F +NPG W HCH+ H++ GL++ FL D Q
Sbjct: 532 FKTDNPGAWLFHCHIAWHVSGGLSVDFLERPNDLRTQ 568
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 479 HPMHLHGHEFYVVGSGFGN---------FNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIR 529
HPMHLHGH+F V+G F+P+ D + N +PPRR+T +P GGW+ +
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 530 FVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDEELQAVQSPPLDL 575
F +NPG W HCH+ H++ GL++ FL D + Q D
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQEDEDDF 536
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 13/233 (5%)
Query: 58 VNGQFPGPTLQVRDGDTLIITTINRAQYNIT-LHWHGVNLKGNPWADGPEYVTQCPIQP- 115
+NG GP + GDT+ +T IN N T +HWHG+ K DG VT+CPI P
Sbjct: 60 INGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPPK 119
Query: 116 GRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIYPRIGSSYPFPVPNREIPILLGE 174
G TY++ Q GT W+H+H S V G I I +S P+ + PI +
Sbjct: 120 GGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQI--NGPASLPYDIDLGVFPIT--D 174
Query: 175 WWDKNPMDVLMQAIFT-GAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRII 233
++ + D++ FT AP SD ING + + + G+ LRI+
Sbjct: 175 YYYRAADDLVH---FTQNNAPPFSDNVLINGTAVNP-NTGEGQYANVTLTPGKRHRLRIL 230
Query: 234 NAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPP 286
N + + NH +TV+ D A + + +A GQ +V++ A + P
Sbjct: 231 NTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAP 283
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 479 HPMHLHGHEFYVVGSGFGN---------FNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIR 529
HPMHLHGH+F V+G F+P+ D + N +PPRR+T +P GGW+ +
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 530 FVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDEELQAVQSPPLDL 575
F +NPG W HCH+ H++ GL++ FL D + Q D
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQEDEDDF 536
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 107/233 (45%), Gaps = 13/233 (5%)
Query: 58 VNGQFPGPTLQVRDGDTLIITTINRAQYNIT-LHWHGVNLKGNPWADGPEYVTQCPIQP- 115
+NG GP + GDT+ +T IN N T +HWHG++ K DG VT+CPI P
Sbjct: 60 INGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPK 119
Query: 116 GRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIYPRIGSSYPFPVPNREIPILLGE 174
G TY++ Q GT W+H+H S V G I I +S P+ + PI +
Sbjct: 120 GGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQI--NGPASLPYDIDLGVFPIT--D 174
Query: 175 WWDKNPMDVLMQAIFT-GAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRII 233
++ + D++ FT AP SD ING + + + G+ LRI+
Sbjct: 175 YYYRAADDLVH---FTQNNAPPFSDNVLINGTAVNP-NTGEGQYANVTLTPGKRHRLRIL 230
Query: 234 NAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPP 286
N + + NH +TV+ D A + + +A GQ +V++ A + P
Sbjct: 231 NTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAP 283
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 479 HPMHLHGHEFYVVGSGFGN---------FNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIR 529
HPMHLHGH+F V+G F+P+ D + N +PPRR+T +P GGW+ +
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 530 FVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDEELQAVQSPPLDL 575
F +NPG W HCH+ H++ GL++ FL D + Q D
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQEDEDDF 536
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 107/233 (45%), Gaps = 13/233 (5%)
Query: 58 VNGQFPGPTLQVRDGDTLIITTINRAQYNIT-LHWHGVNLKGNPWADGPEYVTQCPIQP- 115
+NG GP + GDT+ +T IN N T +HWHG++ K DG VT+CPI P
Sbjct: 60 INGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPK 119
Query: 116 GRSYTYQFTIEGQEGTLWWHAH-SRWIRATVYGAIIIYPRIGSSYPFPVPNREIPILLGE 174
G TY++ Q GT W+H+H S V G I I +S P+ + PI +
Sbjct: 120 GGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQI--NGPASLPYDIDLGVFPIT--D 174
Query: 175 WWDKNPMDVLMQAIFT-GAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRII 233
++ + D++ FT AP SD ING + + + G+ LRI+
Sbjct: 175 YYYRAADDLVH---FTQNNAPPFSDNVLINGTAVNP-NTGEGQYANVTLTPGKRHRLRIL 230
Query: 234 NAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPP 286
N + + NH +TV+ D A + + +A GQ +V++ A + P
Sbjct: 231 NTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAP 283
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 32/235 (13%)
Query: 56 VTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQP 115
+T G FPGPTL+VR DT+ +T NR LHWHG+ + +P D P I P
Sbjct: 38 LTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPI--SPKVDDP----FLEIPP 91
Query: 116 GRSYTYQFTIEGQ-EGTLWWHAH-----SRWIRATVYGAIIIYPRIGSSYPFPVPNREIP 169
G S+TY+FT+ + GT W+H H + + A + GA+++ + + IP
Sbjct: 92 GESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDA----------IP 141
Query: 170 ILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFT-INGQPGDLYRC--SRRETVRFQVEAGE 226
L + + VL G P +NG+ GDL + R T+ V
Sbjct: 142 ELREA---EEHLLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGALRPTL---VAQKA 195
Query: 227 TVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKA-FSTSVIMIAPGQTTNVLL 280
T+ LR++NA+ + + +H L ++ D + + S +++APG+ VL+
Sbjct: 196 TLRLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLV 250
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 104/256 (40%), Gaps = 31/256 (12%)
Query: 37 FHEFIEAKPVK-RLCRTHNTV--TVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHG 93
FH +E K L + T+ T NG P P ++V +GD L I N+ + T+HWHG
Sbjct: 51 FHATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHG 110
Query: 94 VNLKGNPWADGPEYVTQCPIQPGRSYTYQFTI-EGQEGTLWWHAH-----SRWIRATVYG 147
V + P DG + PI G Y+F I + GT W+H H S+ + + G
Sbjct: 111 VPVP--PDQDGSPH---DPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAG 165
Query: 148 AIIIYPRIGSSYPFPVPNREIPILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPG 207
A +I + + L +K+ M ++ PN + +NG+ G
Sbjct: 166 AFVIKAKKDA--------------LSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREG 211
Query: 208 DLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSY-TKAFSTS 266
+ + + + ++ E + RI NA + L + +VG D K
Sbjct: 212 EFVLINGQFKPKIKLATNERI--RIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKE 269
Query: 267 VIMIAPGQTTNVLLTA 282
+ ++P VL+ A
Sbjct: 270 ELFLSPASRVEVLIDA 285
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 478 DHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGI 537
DHP H+HG +F ++ S N +F + R+TI + P + +R + G+
Sbjct: 406 DHPFHIHGTQFELISS---KLNGKVQKAEFRAL----RDTINVRPNEELRLRMKQDFKGL 458
Query: 538 WFMHCHLDSHLTWGL 552
HCH+ H G+
Sbjct: 459 RMYHCHILEHEDLGM 473
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 450 LKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNL 509
L +Y L + +++ + T+ HP HLHGH F VV S + +N
Sbjct: 366 LPSGSVYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVRSA--------GSTVYNY 417
Query: 510 IDPPRRNTI--GMPPGG-WVAIRFVANNPGIWFMHCHLDSHLTWGLAMAF 556
+P R+ + G P G V IRF +NPG WF+HCH+D HL G A+ F
Sbjct: 418 DNPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 57 TVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPG 116
+ NG+ PGPTL R+GD L I N + T+H+HGV+ DG + I PG
Sbjct: 58 SYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVH---RATMDGTPGIGAGSIAPG 114
Query: 117 RSYTYQFTIEGQEGTLWWHAHSR----WIRATVYGAIIIYPRIG 156
+S+TY+F GT +H H I +YG I+ P+ G
Sbjct: 115 QSFTYEFDAT-PFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEG 157
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 42/234 (17%)
Query: 65 PTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFT 124
PT+ +R G + +T N+ +HWHG ++ W + I PG SY Y F
Sbjct: 38 PTIILRRGQRVDMTLKNKLTEPTIVHWHGFDVN---WHNDAH--PSFAITPGESYNYSFD 92
Query: 125 IEGQEGTLWWHAHSRWIRATVYG----AIIIYPRIGSSYPFPVPNREIPILLGEW----- 175
+ + GT +H H + A + ++I GS F ++P+++ +
Sbjct: 93 VVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSDLGFKYGVNDLPLVISDRRFIGG 152
Query: 176 ---WDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRI 232
++ PM+ M A F G +A +NG +++ S G + LR+
Sbjct: 153 APVYNPTPME--MIAGFLG------NAVLVNGVKDAVFKLS-----------GGSYRLRL 193
Query: 233 INAAMNQELFFGVANHN-----LTVVGVDTSY-TKAFSTSVIMIAPGQTTNVLL 280
+N + + + N + ++ VD + + + +AP + V++
Sbjct: 194 VNGSNARLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVV 247
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR----W-IRATVYG 147
V+ G A G +T + PG T +F + + GT +HA W + + + G
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHAAPEGMVPWHVVSGMSG 146
Query: 148 AIIIYPRIGSSYP 160
+++ PR G P
Sbjct: 147 TLMVLPRDGLKDP 159
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE---------GQEGTLWWHAHSRWIRA 143
VN G A G +T + PG T +F + EG + WH + +
Sbjct: 90 NVNFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH-----VVS 142
Query: 144 TVYGAIIIYPRIGSSYP 160
+ G +++ PR G P
Sbjct: 143 GMSGTLMVLPRDGLKDP 159
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 51 RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQ 110
+T T NG GP ++++ G + + N+ TLHWHG+ + G GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGE-VDGGPQGI-- 90
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAH-----SRWIRATVYGAIII 151
I PG + ++ T W+H H R + + G ++I
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVI 134
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 51 RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQ 110
+T T NG GP ++++ G + + N+ TLHWHG+ + G GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGE-VDGGPQGI-- 90
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAHS-----RWIRATVYGAIII 151
I PG + ++ T W+H H R + + G ++I
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVI 134
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 51 RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQ 110
+T T NG GP ++++ G + + N+ TLHWHG+ + G GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGE-VDGGPQGI-- 90
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAHS-----RWIRATVYGAIII 151
I PG + ++ T W+H H R + + G ++I
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVI 134
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 51 RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQ 110
+T T NG GP ++++ G + + N+ TLHWHG+ + G GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGE-VDGGPQGI-- 90
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAHS-----RWIRATVYGAIII 151
I PG + ++ T W+H H R + + G ++I
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVI 134
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 42/122 (34%)
Query: 468 WQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPG---- 523
W + + + HP H+HG +F ++ G PP
Sbjct: 404 WVISGVGDMMLHPFHIHGTQFRILSEN------------------------GKPPAAHRA 439
Query: 524 GW------------VAIRFVANNPG--IWFMHCHLDSHLTWGLAMAFLVENGDEELQAVQ 569
GW V ++F + P + HCHL H G+ + F V GD L A
Sbjct: 440 GWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHDDTGMMLGFTVLQGDHGLSAWS 499
Query: 570 SP 571
P
Sbjct: 500 HP 501
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 51 RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQ 110
+T T NG GP ++++ G + + N+ TLHWHG+ + G GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGE-VDGGPQGI-- 90
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAH-----SRWIRATVYGAIII 151
I PG + ++ T W+H H R + + G ++I
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVI 134
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 51 RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQ 110
+T T NG GP ++++ G + + N+ TLHWHG+ + G GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGE-VDGGPQGI-- 90
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAHS-----RWIRATVYGAIII 151
I PG + ++ T W+H H R + + G ++I
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVI 134
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 42/125 (33%), Gaps = 42/125 (33%)
Query: 468 WQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPG---- 523
W + + + HP H+HG +F ++ G PP
Sbjct: 404 WVISGVGDMMLHPFHIHGTQFRILSEN------------------------GKPPAAHRA 439
Query: 524 GW------------VAIRFVANNPG--IWFMHCHLDSHLTWGLAMAFLVENGDEELQAVQ 569
GW V ++F + P + HCHL H G+ + F V GD L A
Sbjct: 440 GWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTVLQGDHGLSAWS 499
Query: 570 SPPLD 574
P +
Sbjct: 500 HPQFE 504
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 51 RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQ 110
+T T NG GP ++++ G + + N+ TLHWHG+ + G GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGE-VDGGPQGI-- 90
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAHS-----RWIRATVYGAIII 151
I PG + ++ T W+H H R + + G ++I
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVI 134
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 35/236 (14%)
Query: 58 VNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGR 117
+NG++ GPT++V GD + + NR N+++ G+ + G P GP + + P
Sbjct: 43 INGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQVPG-PLMGGPARM----MSPNA 97
Query: 118 SYTYQFTIEGQEGTLWWHAH-----SRWIRATVYGAIIIYPRIGSSYPFPVPNR----EI 168
+ I TLW+HA+ ++ + + G ++ + S P+PN +
Sbjct: 98 DWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKS--LPIPNHYGVDDF 155
Query: 169 PILLGEWWDKNPMDVLMQAIFT--GAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGE 226
P+++ DK +D + G+ V D +NG SR
Sbjct: 156 PVIIQ---DKR-LDNFGTPEYNEPGSGGFVGDTLLVNGVQSPYVEVSR-----------G 200
Query: 227 TVLLRIINAAMNQELFFGVANHN-LTVVGVDTSYTKA-FSTSVIMIAPGQTTNVLL 280
V LR++NA+ ++ + + L V+ D + A S + +APG+ +L+
Sbjct: 201 WVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILV 256
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 51 RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQ 110
+T T NG GP ++++ G + + N+ TLHWHG+ + G GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGE-VDGGPQGI-- 90
Query: 111 CPIQPGRSYTYQFTIEGQEGTLWWHAH-----SRWIRATVYGAIII 151
I PG + ++ T W+H H R + + G ++I
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVI 134
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 42/118 (35%)
Query: 468 WQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPG---- 523
W + + + HP H+HG +F ++ G PP
Sbjct: 404 WVISGVGDMMLHPFHIHGTQFRILSEN------------------------GKPPAAHRA 439
Query: 524 GW------------VAIRFVANNPG--IWFMHCHLDSHLTWGLAMAFLVENGDEELQA 567
GW V ++F + P + HCHL H G+ + F V GD LQ
Sbjct: 440 GWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTVLQGDHGLQG 497
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR----W-IRATVYG 147
V+ G A G +T + PG T +F + + GT +H W + + + G
Sbjct: 90 SVDFHGATGALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSG 146
Query: 148 AIIIYPRIGSSYP 160
+++ PR G P
Sbjct: 147 TLMVLPRDGLKDP 159
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE---------GQEGTLWWHAHSRWIRA 143
V+ G A G +T + PG T +F + EG + WH + +
Sbjct: 90 SVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH-----VVS 142
Query: 144 TVYGAIIIYPRIGSSYP 160
+ G +++ PR G P
Sbjct: 143 GMSGTLMVLPRDGLKDP 159
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE---------GQEGTLWWHAHSRWIRA 143
V+ G A G +T + PG T +F + EG + WH + +
Sbjct: 90 SVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH-----VVS 142
Query: 144 TVYGAIIIYPRIGSSYP 160
+ G +++ PR G P
Sbjct: 143 GMSGTLMVLPRDGLKDP 159
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR----W-IRATVYG 147
V+ G A G +T + PG T +F + + GT +H W + + + G
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSG 146
Query: 148 AIIIYPRIGSSYP 160
+++ PR G P
Sbjct: 147 TLMVLPRDGLKDP 159
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 32 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 88
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE---------GQEGTLWWHAHSRWIRA 143
V+ G A G +T + PG T +F + EG + WH + +
Sbjct: 89 NVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH-----VVS 141
Query: 144 TVYGAIIIYPRIGSSYP 160
+ G +++ PR G P
Sbjct: 142 GLSGTLMVLPRDGLKDP 158
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE---------GQEGTLWWHAHSRWIRA 143
V+ G A G +T + PG T +F + EG + WH + +
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH-----VVS 142
Query: 144 TVYGAIIIYPRIGSSYP 160
+ G +++ PR G P
Sbjct: 143 GMSGTLMVLPRDGLKDP 159
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR----W-IRATVYG 147
V+ G A G +T + PG T +F + + GT +H W + + + G
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSG 146
Query: 148 AIIIYPRIGSSYP 160
+++ PR G P
Sbjct: 147 TLMVLPRDGLKDP 159
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE---------GQEGTLWWHAHSRWIRA 143
V+ G A G +T + PG T +F + EG + WH + +
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH-----VVS 142
Query: 144 TVYGAIIIYPRIGSSYP 160
+ G +++ PR G P
Sbjct: 143 GMSGTLMVLPRDGLKDP 159
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE---------GQEGTLWWHAHSRWIRA 143
V+ G A G +T + PG T +F + EG + WH + +
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYVCAPEGMVPWH-----VVS 142
Query: 144 TVYGAIIIYPRIGSSYP 160
+ G +++ PR G P
Sbjct: 143 GMSGTLMVLPRDGLKDP 159
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 36 QFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHG 93
+F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 34 EFTMTIEEKKMVIDDSGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---HN 90
Query: 94 VNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR----W-IRATVYGA 148
V+ G A G +T + PG T +F + + GT +H W + + + G
Sbjct: 91 VDFHGATGALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPSGMVPWHVVSGMSGT 147
Query: 149 IIIYPRIGSSYPFPVP 164
+++ PR G P P
Sbjct: 148 LMVLPRDGLKDPAGAP 163
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR----W-IRATVYG 147
V+ G A G +T + PG T +F + + GT +H W + + + G
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGLSG 146
Query: 148 AIIIYPRIGSSYPFPVP 164
+++ PR G P P
Sbjct: 147 TLMVLPRDGLKDPEGKP 163
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR----W-IRATVYG 147
V+ G A G +T + PG T +F + + GT +H W + + + G
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGLSG 146
Query: 148 AIIIYPRIGSSYPFPVP 164
+++ PR G P P
Sbjct: 147 TLMVLPRDGLKDPEGKP 163
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR----W-IRATVYG 147
V+ G A G +T + PG T +F + + GT +H W + + + G
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSG 146
Query: 148 AIIIYPRIGSSYP 160
+++ PR G P
Sbjct: 147 TLMVLPRDGLKDP 159
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 34 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 90
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR----W-IRATVYG 147
V+ G A G +T + PG T +F + + GT +H W + + + G
Sbjct: 91 NVDFHGATGALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSG 147
Query: 148 AIIIYPRIGSSYP 160
+++ PR G P
Sbjct: 148 TLMVLPRDGLKDP 160
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 39 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 95
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE---------GQEGTLWWHAHSRWIRA 143
V+ G A G +T + PG T +F + EG + WH + +
Sbjct: 96 NVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH-----VVS 148
Query: 144 TVYGAIIIYPRIGSSYP 160
+ G +++ PR G P
Sbjct: 149 GMSGTLMVLPRDGLKDP 165
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR----W-IRATVYG 147
V+ G A G +T + PG T +F + + GT +H W + + + G
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSG 146
Query: 148 AIIIYPRIGSSYP 160
+++ PR G P
Sbjct: 147 TLMVLPRDGLKDP 159
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR-----WIRATVYG 147
V+ G A G +T + PG T +F + + GT +H + + + G
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPHHVVSGMSG 146
Query: 148 AIIIYPRIGSSYP 160
+++ PR G P
Sbjct: 147 TLMVLPRDGLKDP 159
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE---------GQEGTLWWHAHSRWIRA 143
V+ G A G +T + PG T +F + EG + WH + +
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH-----VVS 142
Query: 144 TVYGAIIIYPRIGSSYP 160
G +++ PR G P
Sbjct: 143 GASGTLMVLPRDGLKDP 159
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 479 HPMHLHGHEFYVVGSGF--GNFNPSTDTPKFNLIDPPRRNTIGMPPG---GWVAIRFVAN 533
H HLHGH + +G ++PS P ++ D + PG G+ I
Sbjct: 212 HTFHLHGHRWLDNRTGMRTSEYDPS---PLIDIKD--------LNPGVSFGFQVIAGEGV 260
Query: 534 NPGIWFMHCHLDSHLTWGLAMAFLVENGDEELQA 567
PG+W HCH+ +H G+A FLV N D + A
Sbjct: 261 GPGMWMYHCHVQNHSDMGMAGMFLVRNADGTMPA 294
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 22/108 (20%)
Query: 63 PGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPG--RSYT 120
PGP L++ +GDTL I +N ++LH HGV+ N +DG + + PG R YT
Sbjct: 56 PGPVLEMWEGDTLEIDLVNTTDRVLSLHPHGVDYDVN--SDGT-LMNGSAVMPGQTRRYT 112
Query: 121 YQFTI-----EGQ--EGTL-WWHAH---------SRWIRATVYGAIII 151
++ + +G EGT +WH H + + +YGA+++
Sbjct: 113 WRSHVGYRRADGSWAEGTAGYWHYHDHAMGTEHGTEGVLKGLYGALVV 160
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 34 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 90
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRATVYGAIIIY 152
V+ G A G +T + PG T +F + + GT +H + G +++
Sbjct: 91 NVDFHGATGALGGAKLTN--VNPGEQATLRFKAD-RSGTFVYHCTPHPFMS---GTLMVL 144
Query: 153 PRIGSSYP 160
PR G P
Sbjct: 145 PRDGLKDP 152
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE---------GQEGTLWWHAHSRWIRA 143
V G A G +T + PG T +F + EG + WH + +
Sbjct: 90 NVEFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH-----VVS 142
Query: 144 TVYGAIIIYPRIGSSYP 160
+ G +++ PR G P
Sbjct: 143 GMSGTLMVLPRDGLKDP 159
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 21/141 (14%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE---------GQEGTLWWHAHSRWIRA 143
V+ G A G +T + PG T +F + EG + WH + +
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH-----VVS 142
Query: 144 TVYGAIIIYPRIGSSYPFPVP 164
G +++ PR G P P
Sbjct: 143 GQSGTLMVLPRDGLKDPEGKP 163
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 21/141 (14%)
Query: 35 IQFHEFIEAKP--VKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
++F IE K + T +T NG PGPTL V +GD + +T +N A + H
Sbjct: 33 VEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP---H 89
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE---------GQEGTLWWHAHSRWIRA 143
V+ G A G +T + PG T +F + EG + WH + +
Sbjct: 90 NVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH-----VVS 142
Query: 144 TVYGAIIIYPRIGSSYPFPVP 164
G +++ PR G P P
Sbjct: 143 GQSGTLMVLPRDGLKDPEGKP 163
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 34 EIQFHEFIEAKPVKRLCR----THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITL 89
EI ++E +E KP + + V +G PGPT QV G ++ IN A+ ++
Sbjct: 35 EIWYYE-VEIKPFTHQVYPDLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSV 93
Query: 90 HWHGVNLKG--NPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA 143
H HG + + WA E +T +PG Y + TLW+H H+ I A
Sbjct: 94 HLHGSFSRAAFDGWA---EDIT----EPGSFKDYYYPNRQSARTLWYHDHAMHITA 142
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 479 HPMHLHGHEFYVVGSGFGNFNPSTDTP-KFNLIDP---PRRNTIGMPPGGWVAIRFVANN 534
HP+H+H +F V+ GN N T P + L D RR T+ V A
Sbjct: 398 HPIHIHLVDFKVISRTSGN-NARTVMPYESGLKDVVWLGRRETV-------VVEAHYAPF 449
Query: 535 PGIWFMHCHLDSHLTWGLAMAF 556
PG++ HCH H + AF
Sbjct: 450 PGVYMFHCHNLIHEDHDMMAAF 471
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 476 VEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNP 535
++ H +H HGH F G S+D F++ PG + + P
Sbjct: 972 IDLHTVHFHGHSFQYKHRGV----YSSDV--FDIF-----------PGTYQTLEMFPRTP 1014
Query: 536 GIWFMHCHLDSHLTWGLAMAFLV 558
GIW +HCH+ H+ G+ + V
Sbjct: 1015 GIWLLHCHVTDHIHAGMETTYTV 1037
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 514 RRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVE 559
R +TI + P VA NPG W + C +HL GL F V+
Sbjct: 291 RIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQ 336
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 62 FPGPTLQVRDGDTLIITTINRAQYNITLHWHGVN-LKGNPWADGPEYVTQC-----PIQP 115
F GP ++ GD + + N A T H HG+ K + A P+ T + P
Sbjct: 73 FLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYP 132
Query: 116 GRSYTY 121
G YTY
Sbjct: 133 GEQYTY 138
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles Of
Various Metal Cation Binding Sites
Length = 1065
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 476 VEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNP 535
++ H +H HGH F G S+D F++ PG + + P
Sbjct: 991 IDLHTVHFHGHSFQYKHRGV----YSSDV--FDIF-----------PGTYQTLEMFPRTP 1033
Query: 536 GIWFMHCHLDSHLTWGLAMAFLV 558
GIW +HCH+ H+ G+ + V
Sbjct: 1034 GIWLLHCHVTDHIHAGMETTYTV 1056
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 514 RRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVE 559
R +TI + P VA NPG W + C +HL GL F V+
Sbjct: 310 RIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQ 355
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 62 FPGPTLQVRDGDTLIITTINRAQYNITLHWHGVN-LKGNPWADGPEYVTQC-----PIQP 115
F GP ++ GD + + N A T H HG+ K + A P+ T + P
Sbjct: 92 FLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYP 151
Query: 116 GRSYTY 121
G YTY
Sbjct: 152 GEQYTY 157
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 22/109 (20%)
Query: 62 FPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPG--RSY 119
PGP +++ +GDTL I N ++LH HG++ + + +DG + ++ ++PG R+Y
Sbjct: 39 IPGPLIELNEGDTLHIEFENTMDVPVSLHVHGLDYEIS--SDGTKQ-SRSDVEPGGTRTY 95
Query: 120 TYQFTIEGQ--EGTL------WWHAHSR---------WIRATVYGAIII 151
T++ + G+ +GT +WH H IR +YG +I+
Sbjct: 96 TWRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIV 144
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 479 HPMHLHGHEFYVVGSGF--GNFNPSTDTPKFNLIDPPRRNTIGMPPG--GWVAIRFVANN 534
H HLHGH + +G G +PS +ID N I P G+ I
Sbjct: 196 HTFHLHGHRWADNRTGMLTGPDDPS------QVID----NKICGPADSFGFQVIAGEGVG 245
Query: 535 PGIWFMHCHLDSHLTWGLAMAFLVENGD 562
G W HCH+ SH G+ FLV+ D
Sbjct: 246 AGAWMYHCHVQSHSDMGMVGLFLVKKPD 273
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 22/108 (20%)
Query: 63 PGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPG--RSYT 120
PGP ++V +GDTL I N +LH HG++ + + +DG + + ++PG R+YT
Sbjct: 38 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDFEIS--SDGTA-MNKSDVEPGGTRTYT 94
Query: 121 YQFTIEGQ--EGTL------WWHAHSR---------WIRATVYGAIII 151
++ G+ +GT +WH H IR +YG +I+
Sbjct: 95 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIV 142
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 54 NTVTVNGQFP--GPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQC 111
N +T+N + P GP + GD + I I +Y T H H G+ WAD +
Sbjct: 159 NDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMH-----GHRWADNRTGILTG 213
Query: 112 PIQPGR 117
P P R
Sbjct: 214 PDDPSR 219
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 479 HPMHLHGHEFYVVGSGF--GNFNPSTDTPKFNLIDPPRRNTIGMPPG--GWVAIRFVANN 534
H H+HGH + +G G +PS +ID N I P G+ I
Sbjct: 194 HTFHMHGHRWADNRTGILTGPDDPS------RVID----NKITGPADSFGFQIIAGEGVG 243
Query: 535 PGIWFMHCHLDSHLTWGLAMAFLVENGD 562
G W HCH+ SH G+ FLV+ D
Sbjct: 244 AGAWMYHCHVQSHSDMGMVGLFLVKKPD 271
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 22/108 (20%)
Query: 63 PGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPG--RSYT 120
PGP ++V +GDTL I N +LH HG++ + + +DG + + ++PG R+YT
Sbjct: 34 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYT 90
Query: 121 YQFTIEGQ--EGTL------WWHAHSR---------WIRATVYGAIII 151
++ G+ +GT +WH H IR +YG +I+
Sbjct: 91 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIV 138
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 54 NTVTVNGQFP--GPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQC 111
N +T+N + P GP + GD + I I +Y T H H G+ WAD +
Sbjct: 155 NDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMH-----GHRWADNRTGILTG 209
Query: 112 PIQPGR 117
P P R
Sbjct: 210 PDDPSR 215
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 479 HPMHLHGHEFYVVGSGF--GNFNPSTDTPKFNLIDPPRRNTIGMPPG--GWVAIRFVANN 534
H H+HGH + +G G +PS +ID N I P G+ I
Sbjct: 190 HTFHMHGHRWADNRTGILTGPDDPS------RVID----NKITGPADSFGFQIIAGEGVG 239
Query: 535 PGIWFMHCHLDSHLTWGLAMAFLVENGD 562
G W HCH+ SH G+ FLV+ D
Sbjct: 240 AGAWMYHCHVQSHSDMGMVGLFLVKKPD 267
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 22/108 (20%)
Query: 63 PGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPG--RSYT 120
PGP ++V +GDTL I N +LH HG++ + + +DG + + ++PG R+YT
Sbjct: 75 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYT 131
Query: 121 YQFTIEGQ--EGTL------WWHAHSR---------WIRATVYGAIII 151
++ G+ +GT +WH H IR +YG +I+
Sbjct: 132 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIV 179
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 54 NTVTVNGQFP--GPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQC 111
N +T+N + P GP + GD + I I +Y T H H G+ WAD +
Sbjct: 196 NDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMH-----GHRWADNRTGILTG 250
Query: 112 PIQPGRSYTYQFT 124
P P R + T
Sbjct: 251 PDDPSRVIDNKIT 263
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 479 HPMHLHGHEFYVVGSGF--GNFNPSTDTPKFNLIDPPRRNTIGMPPG--GWVAIRFVANN 534
H H+HGH + +G G +PS +ID N I P G+ I
Sbjct: 231 HTFHMHGHRWADNRTGILTGPDDPS------RVID----NKITGPADSFGFQIIAGEGVG 280
Query: 535 PGIWFMHCHLDSHLTWGLAMAFLVENGD 562
G W HCH+ SH G+ FLV+ D
Sbjct: 281 AGAWMYHCHVQSHSDMGMVGLFLVKKPD 308
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 22/108 (20%)
Query: 63 PGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPG--RSYT 120
PGP ++V +GDTL I N +LH HG++ + + +DG + + ++PG R+YT
Sbjct: 37 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDAEIS--SDGTA-MNKSDVEPGGTRTYT 93
Query: 121 YQFTIEGQ--EGTL------WWHAHSR---------WIRATVYGAIII 151
++ G+ +GT +WH H IR +YG +I+
Sbjct: 94 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIV 141
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 54 NTVTVNGQFP--GPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQC 111
N +T+N + P GP + GD + I I +Y T H H G+ WAD +
Sbjct: 158 NDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMH-----GHRWADNRTGILTG 212
Query: 112 PIQPGRSYTYQFT 124
P P R + T
Sbjct: 213 PDDPSRVIDNKIT 225
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 479 HPMHLHGHEFYVVGSGF--GNFNPSTDTPKFNLIDPPRRNTIGMPPG--GWVAIRFVANN 534
H H+HGH + +G G +PS +ID N I P G+ I
Sbjct: 193 HTFHMHGHRWADNRTGILTGPDDPS------RVID----NKITGPADSFGFQIIAGEGVG 242
Query: 535 PGIWFMHCHLDSHLTWGLAMAFLVENGD 562
G W HCH+ SH G+ FLV+ D
Sbjct: 243 AGAWMYHCHVQSHSDMGMVGLFLVKKPD 270
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 35 IQFHEFIEAKPV--KRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWH 92
+QF IE K + T +T NG PGPTL V +GD + +T +N A ++ H
Sbjct: 29 VQFRMSIEEKKMVADDDGTTAQAMTFNGSVPGPTLVVHEGDYIELTLVNPATNSMP---H 85
Query: 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR----W-IRATVYG 147
V+ A G +TQ + PG+ +F + + GT +H W + + + G
Sbjct: 86 NVDFHAATGALGGAGLTQ--VVPGQEAVLRFKAD-RSGTFVYHCAPAGMVPWHVVSGMNG 142
Query: 148 AIIIYPRIG 156
A+++ PR G
Sbjct: 143 ALMVLPRDG 151
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 37/184 (20%)
Query: 64 GPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPW--ADGPEYVTQC--------PI 113
GPT+Q DT++IT N A + ++LH GV+ W ++G EY Q +
Sbjct: 74 GPTIQAEVYDTVVITLKNMASHPVSLHAVGVSY----WKASEGAEYDDQTSQREKEDDKV 129
Query: 114 QPGRSYTYQFTIEGQEG---------TLWWHAHSRWIRATVYGAI--IIYPRIGSSYPFP 162
PG S+TY + + + G T + +H ++ G I ++ R GS
Sbjct: 130 FPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLVCREGSLAKEK 189
Query: 163 VPNREIPILL------GEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQ-----PGDLYR 211
ILL G+ W + LMQ +A T+NG PG L
Sbjct: 190 TQTLHKFILLFAVFDEGKSWHSETKNSLMQDRDAASARAWPKMHTVNGYVNRSLPG-LIG 248
Query: 212 CSRR 215
C R+
Sbjct: 249 CHRK 252
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 51 RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVN----LKGNPWADGPE 106
+T + GP L GDTL+I N+A ++ HG+ L G +
Sbjct: 438 KTREAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVK 497
Query: 107 YVTQCPIQPGRSYTYQFTIEGQEG 130
++ PI PG + Y++T+ ++G
Sbjct: 498 HLKDFPILPGEIFKYKWTVTVEDG 521
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 37/184 (20%)
Query: 64 GPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPW--ADGPEYVTQC--------PI 113
GPT+Q DT++IT N A + ++LH GV+ W ++G EY Q +
Sbjct: 73 GPTIQAEVYDTVVITLKNMASHPVSLHAVGVSY----WKASEGAEYDDQTSQREKEDDKV 128
Query: 114 QPGRSYTYQFTIEGQEG---------TLWWHAHSRWIRATVYGAI--IIYPRIGSSYPFP 162
PG S+TY + + + G T + +H ++ G I ++ R GS
Sbjct: 129 FPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLVCREGSLAKEK 188
Query: 163 VPNREIPILL------GEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQ-----PGDLYR 211
ILL G+ W + LMQ +A T+NG PG L
Sbjct: 189 TQTLHKFILLFAVFDEGKSWHSETKNSLMQDRDAASARAWPKMHTVNGYVNRSLPG-LIG 247
Query: 212 CSRR 215
C R+
Sbjct: 248 CHRK 251
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 51 RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVN----LKGNPWADGPE 106
+T + GP L GDTL+I N+A ++ HG+ L G +
Sbjct: 437 KTREAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVK 496
Query: 107 YVTQCPIQPGRSYTYQFTIEGQEG 130
++ PI PG + Y++T+ ++G
Sbjct: 497 HLKDFPILPGEIFKYKWTVTVEDG 520
>pdb|3GYR|A Chain A, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|B Chain B, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|C Chain C, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|D Chain D, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|E Chain E, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|F Chain F, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|G Chain G, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|H Chain H, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|I Chain I, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|J Chain J, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|K Chain K, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|L Chain L, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center
Length = 612
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 55/164 (33%)
Query: 59 NGQFPGPTLQVRDGDTLIITTINR----AQYNIT-------------------------- 88
+GQ PGPT++VR G + I NR ++Y +T
Sbjct: 59 DGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTEPGRGGVEPN 118
Query: 89 -----------LHWHGVNLKG--NPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWH 135
H HG G + WAD + G + ++ + Q W+H
Sbjct: 119 KDVAALPAWSVTHLHGAQTGGGNDGWADNA-------VGFGDAQLSEYPNDHQATQWWYH 171
Query: 136 AHS----RW-IRATVYGAIIIYPRIGSSYPFPVPNREIPILLGE 174
H+ RW + A +YG ++ + P +REIP+L+ +
Sbjct: 172 DHAMNITRWNVMAGLYGTYLVRDDEEDALGLPSGDREIPLLIAD 215
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 479 HPMHLHGHEFYVVG------SGFGNFNPSTDTPKFNLIDPP---------RRNTIGMP-P 522
HPMH+H +F V+G SGF T TP D P ++ +P P
Sbjct: 494 HPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELGHKDVFQVPGP 553
Query: 523 GGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLV 558
G + G + HCHL H G+ F+V
Sbjct: 554 QGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVV 589
>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
Length = 306
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 64 GPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQC--------PIQP 115
GPTL GD + + N+A +++H G+ K + +++G Y + P
Sbjct: 59 GPTLYAEVGDIMKVHFKNKAHKPLSIHAQGI--KYSKFSEGASYSDHTLPMEKMDDAVAP 116
Query: 116 GRSYTYQFTIEGQEG 130
G+ YTY++ I G
Sbjct: 117 GQEYTYEWIISEHSG 131
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 57 TVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPG 116
T +G PG ++VR+GDT+ + N + H V+ + PG
Sbjct: 62 TFDGDVPGRMIRVREGDTVEVEFSNNPSSTVP---HNVDF--HAATGQGGGAAATFTAPG 116
Query: 117 RSYTYQFTIEGQEGTLWWHAH----SRWIRATVYGAIIIYPRIGSSYPFPVPNREIPILL 172
R+ T+ F Q G +H I +YG I++ P+ G P ++E I+
Sbjct: 117 RTSTFSFKAL-QPGLYIYHCAVAPVGMHIANGMYGLILVEPKEG----LPKVDKEFYIVQ 171
Query: 173 GEWWDKNPMDV--LMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLL 230
G+++ K L A + NG G L + + +AGETV +
Sbjct: 172 GDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDN-----ALKAKAGETVRM 226
Query: 231 RIINAAMN 238
+ N N
Sbjct: 227 YVGNGGPN 234
>pdb|2DV6|A Chain A, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|B Chain B, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|C Chain C, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|D Chain D, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|E Chain E, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|F Chain F, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
Length = 447
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 77/219 (35%), Gaps = 32/219 (14%)
Query: 39 EFIEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKG 98
E +E K T+ T NG+ PGP L+VR GDT+ + N +L H V+ G
Sbjct: 169 ETVEVKGQLDDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNHKD---SLMVHSVDFHG 225
Query: 99 NPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHS----RWIRATVYGAIIIYPR 154
G TQ PG F G +H + I +YG +++ P
Sbjct: 226 ATGPGGAAAFTQT--DPGEETVVTFKAL-IPGIYVYHCATPSVPTHITNGMYGLLLVEPE 282
Query: 155 IGSSYPFPVPNREIPILLGEWWDKNPMDV--LMQAIFTGAAPNVSDAFTINGQPGDLYRC 212
G P +RE ++ GE + + + + F NG G L R
Sbjct: 283 GG----LPQVDREFYVMQGEIYTVKSFGTSGEQEMDYEKLINEKPEYFLFNGSVGSLTRS 338
Query: 213 SRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLT 251
GETV +FFGV N T
Sbjct: 339 H-----PLYASVGETV-----------RIFFGVGGPNFT 361
>pdb|1NIB|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|B Chain B, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|C Chain C, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|A Chain A, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|B Chain B, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|C Chain C, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2BW4|A Chain A, Atomic Resolution Structure Of Resting State Of The
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|2BW5|A Chain A, Atomic Resolution Structure Of No-Bound Achromobacter
Cycloclastes Cu Nitrite Reductase
pdb|2BWD|A Chain A, Atomic Resolution Structure Of Achromobacter Cycloclastes
Cu Nitrite Reductase With Endogenously Bound Nitrite And
No
pdb|2BWI|A Chain A, Atomic Resolution Structure Of Nitrite -Soaked
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|1NIC|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NID|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIE|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIF|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2NRD|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2Y1A|A Chain A, Crystal Structure Of Achromobacter Cycloclastes Cu Nitrite
Reductase With Bound No
Length = 340
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 23/166 (13%)
Query: 4 PALITVKPWSSCLLLGVLFIFAF--VASLSHAEIQFHEFIEAKP--VKRLCRTHNTVTVN 59
P I+ P L+ F+ A VA ++F IE K + R + +T N
Sbjct: 6 PVDISTLPRVKVDLVKPPFVHAHDQVAKTGPRVVEFTMTIEEKKLVIDREGTEIHAMTFN 65
Query: 60 GQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSY 119
G PGP + V + D + + IN N LH N+ + + PG
Sbjct: 66 GSVPGPLMVVHENDYVELRLIN-PDTNTLLH----NIDFHAATGALGGGALTQVNPGEET 120
Query: 120 TYQFTIE---------GQEGTLWWHAHSRWIRATVYGAIIIYPRIG 156
T +F EG + WH + + + GAI++ PR G
Sbjct: 121 TLRFKATKPGVFVYHCAPEGMVPWH-----VTSGMNGAIMVLPRDG 161
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 522 PGGWVAIRFVANNPGIWFMHCHLDS----HLTWGLAMAFLV 558
PG +RF A PG++ HC + H+T G+ A +V
Sbjct: 116 PGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMV 156
>pdb|1KCB|A Chain A, Crystal Structure Of A No-Forming Nitrite Reductase
Mutant: An Analog Of A Transition State In Enzymatic
Reaction
Length = 340
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 23/166 (13%)
Query: 4 PALITVKPWSSCLLLGVLFIFAF--VASLSHAEIQFHEFIEAKP--VKRLCRTHNTVTVN 59
P I+ P L+ F+ A VA ++F IE K + R + +T N
Sbjct: 6 PVDISTLPRVKVDLVKPPFVHAHDQVAKTGPRVVEFTMTIEEKKLVIDREGTEIHAMTFN 65
Query: 60 GQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSY 119
G PGP + V + D + + IN N LH N+ + + PG
Sbjct: 66 GSVPGPLMVVHENDYVELRLIN-PDTNTLLH----NIDFHAATGALGGGALTQVNPGEET 120
Query: 120 TYQFTIE---------GQEGTLWWHAHSRWIRATVYGAIIIYPRIG 156
T +F EG + WH + + + GAI++ PR G
Sbjct: 121 TLRFKATKPGVFVYHCAPEGMVPWH-----VTSGMNGAIMVLPRDG 161
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 522 PGGWVAIRFVANNPGIWFMHCHLDS----HLTWGLAMAFLV 558
PG +RF A PG++ HC + H+T G+ A +V
Sbjct: 116 PGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMV 156
>pdb|1RZP|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZQ|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
Length = 335
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 23/166 (13%)
Query: 4 PALITVKPWSSCLLLGVLFIFAF--VASLSHAEIQFHEFIEAKP--VKRLCRTHNTVTVN 59
P I+ P L+ F+ A VA ++F IE K + R + +T N
Sbjct: 6 PVDISTLPRVKVDLVKPPFVHAHDQVAKTGPRVVEFTMTIEEKKLVIDREGTEIHAMTFN 65
Query: 60 GQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSY 119
G PGP + V + D + + IN N LH N+ + + PG
Sbjct: 66 GSVPGPLMVVHENDYVELRLIN-PDTNTLLH----NIDFHAATGALGGGALTQVNPGEET 120
Query: 120 TYQFTIE---------GQEGTLWWHAHSRWIRATVYGAIIIYPRIG 156
T +F EG + WH + + + GAI++ PR G
Sbjct: 121 TLRFKATKPGVFVYHCAPEGMVPWH-----VTSGMNGAIMVLPRDG 161
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 522 PGGWVAIRFVANNPGIWFMHCHLDS----HLTWGLAMAFLV 558
PG +RF A PG++ HC + H+T G+ A +V
Sbjct: 116 PGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMV 156
>pdb|2AVF|A Chain A, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|B Chain B, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|C Chain C, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|D Chain D, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|E Chain E, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|F Chain F, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
Length = 329
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 23/166 (13%)
Query: 4 PALITVKPWSSCLLLGVLFIFAF--VASLSHAEIQFHEFIEAKP--VKRLCRTHNTVTVN 59
P I+ P L+ F+ A VA ++F IE K + R + +T N
Sbjct: 6 PVDISTLPRVKVDLVKPPFVHAHDQVAKTGPRVVEFTMTIEEKKLVIDREGTEIHAMTFN 65
Query: 60 GQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSY 119
G PGP + V + D + + IN N LH N+ + + PG
Sbjct: 66 GSVPGPLMVVHENDYVELRLIN-PDTNTLLH----NIDFHAATGALGGGALTQVNPGEET 120
Query: 120 TYQFTIE---------GQEGTLWWHAHSRWIRATVYGAIIIYPRIG 156
T +F EG + WH + + + GAI++ PR G
Sbjct: 121 TLRFKATKPGVFVYHCAPEGMVPWH-----VTSGMNGAIMVLPRDG 161
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 522 PGGWVAIRFVANNPGIWFMHCHLDS----HLTWGLAMAFLV 558
PG +RF A PG++ HC + H+T G+ A +V
Sbjct: 116 PGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMV 156
>pdb|3MH8|A Chain A, Crystal Structure Of Lprg From Mycobacterium Tuberculosis
pdb|3MH8|B Chain B, Crystal Structure Of Lprg From Mycobacterium Tuberculosis
pdb|3MHA|A Chain A, Crystal Structure Of Lprg From Mycobacterium Tuberculosis
Bound To Pim
pdb|3MHA|B Chain B, Crystal Structure Of Lprg From Mycobacterium Tuberculosis
Bound To Pim
Length = 203
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 47 KRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWA-DGP 105
K L H +TVNG+ PG +L+ GD + T A N+ L G ++ + DG
Sbjct: 25 KALKSAHMVLTVNGKIPGLSLKTLSGD--LTTNPTAATGNVKLTLGGSDIDADFVVFDGI 82
Query: 106 EYVTQCPIQ 114
Y T P Q
Sbjct: 83 LYATLTPNQ 91
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 7/113 (6%)
Query: 430 PVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHL----HG 485
P+P ++ G +S + W ++ L G W DT IV + + + + HG
Sbjct: 60 PLPEVERVQAGAISALRWGG-SAPRVIFLHGGGQNAHTW-DTVIVGLGEPALAVDLPGHG 117
Query: 486 HEFYVVGSGFG-NFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGI 537
H + + N T P + P +GM GG AIR A P +
Sbjct: 118 HSAWREDGNYSPQLNSETLAPVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDL 170
>pdb|2R7E|B Chain B, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 770
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 18/102 (17%)
Query: 458 LKFGSSVQLVWQDTSIVTVED-HPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRN 516
L ++ W S+ + E+ H +H GH F V + K L +
Sbjct: 370 LVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTV---------RKKEEYKMALYN----- 415
Query: 517 TIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLV 558
+ PG + + + + GIW + C + HL G++ FLV
Sbjct: 416 ---LYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLV 454
>pdb|3CDZ|B Chain B, Crystal Structure Of Human Factor Viii
Length = 684
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 18/102 (17%)
Query: 458 LKFGSSVQLVWQDTSIVTVED-HPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRN 516
L ++ W S+ + E+ H +H GH F V + K L +
Sbjct: 284 LVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTV---------RKKEEYKMALYN----- 329
Query: 517 TIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLV 558
+ PG + + + + GIW + C + HL G++ FLV
Sbjct: 330 ---LYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLV 368
>pdb|1SDD|B Chain B, Crystal Structure Of Bovine Factor Vai
Length = 647
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Query: 64 GPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWA-----DGPEYVTQ-CPIQPGR 117
GP ++ D + + N A +LH HG++ + + D PE+ + IQP +
Sbjct: 68 GPVIRAEVDDVIQVRFKNLASRPYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDNAIQPNK 127
Query: 118 SYTYQFTIEGQEGTLWWHAHSR 139
+YTY WHA +R
Sbjct: 128 TYTYV-----------WHATTR 138
>pdb|3MH9|C Chain C, Crystal Structure Of Lprg Mutant V91w From Mycobacterium
Tuberculosis
pdb|3MH9|A Chain A, Crystal Structure Of Lprg Mutant V91w From Mycobacterium
Tuberculosis
Length = 218
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 47 KRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITL 89
K L H +TVNG+ PG +L+ GD T + +TL
Sbjct: 27 KALKSAHMVLTVNGKIPGLSLKTLSGDLTTNPTAATGNWKLTL 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,490,993
Number of Sequences: 62578
Number of extensions: 816756
Number of successful extensions: 1985
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1657
Number of HSP's gapped (non-prelim): 244
length of query: 578
length of database: 14,973,337
effective HSP length: 104
effective length of query: 474
effective length of database: 8,465,225
effective search space: 4012516650
effective search space used: 4012516650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)