Query 039963
Match_columns 578
No_of_seqs 191 out of 1801
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 4E-104 9E-109 859.9 62.6 533 33-578 1-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 5E-102 1E-106 835.4 58.6 515 30-578 22-554 (596)
3 PLN02991 oxidoreductase 100.0 9E-101 2E-105 821.7 59.0 498 27-578 20-530 (543)
4 PLN02354 copper ion binding / 100.0 2E-100 3E-105 825.2 60.1 514 19-578 11-538 (552)
5 KOG1263 Multicopper oxidases [ 100.0 4E-100 8E-105 811.7 59.5 536 19-578 12-555 (563)
6 PLN02835 oxidoreductase 100.0 4E-100 8E-105 821.4 60.0 495 29-578 23-531 (539)
7 PLN02792 oxidoreductase 100.0 8E-100 2E-104 815.6 57.6 503 31-578 12-523 (536)
8 PLN02168 copper ion binding / 100.0 6.7E-98 1E-102 801.1 58.8 495 31-578 22-541 (545)
9 PLN02191 L-ascorbate oxidase 100.0 3.8E-94 8.2E-99 781.2 57.9 528 14-578 3-561 (574)
10 PLN02604 oxidoreductase 100.0 1.8E-93 4E-98 777.8 60.7 522 21-578 10-561 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 1.6E-92 3.4E-97 768.6 57.5 509 35-578 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 2.6E-90 5.7E-95 748.9 54.1 486 36-562 9-535 (538)
13 TIGR01480 copper_res_A copper- 100.0 9.2E-76 2E-80 634.1 51.1 422 36-559 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 1.4E-72 3E-77 605.3 46.5 426 36-558 46-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 2.7E-71 5.8E-76 590.6 44.7 401 37-560 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 4.2E-57 9.1E-62 484.2 42.3 402 49-560 48-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 1.4E-46 3.1E-51 380.5 24.3 264 31-318 23-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 1.9E-34 4.2E-39 249.4 11.3 115 41-155 2-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 5.8E-29 1.3E-33 224.0 11.3 107 450-560 30-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 5.6E-26 1.2E-30 209.1 14.1 149 166-316 1-158 (159)
21 TIGR02376 Cu_nitrite_red nitri 99.8 1.4E-16 3.1E-21 161.7 26.0 242 198-561 48-298 (311)
22 TIGR03095 rusti_cyanin rusticy 99.7 9.8E-17 2.1E-21 144.1 11.5 101 50-152 38-148 (148)
23 TIGR01480 copper_res_A copper- 99.7 2.1E-15 4.4E-20 164.5 20.3 238 56-314 249-586 (587)
24 PRK10965 multicopper oxidase; 99.5 5E-12 1.1E-16 137.0 22.3 233 52-298 211-511 (523)
25 TIGR03096 nitroso_cyanin nitro 99.4 7.2E-13 1.6E-17 114.9 11.4 111 22-148 11-130 (135)
26 PLN02835 oxidoreductase 99.4 3.3E-11 7.1E-16 131.1 22.5 253 53-317 191-514 (539)
27 TIGR03389 laccase laccase, pla 99.4 6.9E-11 1.5E-15 129.6 24.7 254 54-316 167-521 (539)
28 PRK10883 FtsI repressor; Provi 99.4 2.3E-11 5.1E-16 130.6 20.2 220 51-299 207-457 (471)
29 COG2132 SufI Putative multicop 99.3 8.8E-11 1.9E-15 126.5 17.2 235 50-298 186-437 (451)
30 PLN02168 copper ion binding / 99.2 3.5E-09 7.6E-14 115.1 22.1 237 54-295 189-501 (545)
31 TIGR03388 ascorbase L-ascorbat 99.2 1E-09 2.3E-14 120.3 18.0 228 66-297 204-511 (541)
32 PLN02991 oxidoreductase 99.1 1.2E-08 2.6E-13 110.8 25.3 253 53-316 190-512 (543)
33 TIGR03390 ascorbOXfungal L-asc 99.1 4.1E-09 9E-14 115.3 21.3 239 54-297 172-519 (538)
34 PLN02604 oxidoreductase 99.1 2.4E-09 5.2E-14 117.9 18.6 227 65-296 224-533 (566)
35 PLN02792 oxidoreductase 99.1 3.1E-08 6.7E-13 107.8 25.4 254 53-316 179-505 (536)
36 PLN02354 copper ion binding / 99.0 1.9E-08 4.2E-13 109.9 21.0 251 198-560 47-301 (552)
37 PF07731 Cu-oxidase_2: Multico 99.0 2.8E-09 6.1E-14 95.7 11.2 79 216-296 32-121 (138)
38 PLN02191 L-ascorbate oxidase 98.9 3.1E-08 6.8E-13 108.9 18.5 234 58-297 219-534 (574)
39 PLN00044 multi-copper oxidase- 98.8 3.9E-07 8.4E-12 99.9 20.1 83 198-295 49-132 (596)
40 PF07732 Cu-oxidase_3: Multico 98.8 2.8E-08 6.1E-13 86.1 8.1 90 454-561 26-116 (117)
41 PRK02710 plastocyanin; Provisi 98.7 2.2E-07 4.8E-12 80.9 12.5 115 11-152 4-119 (119)
42 PF13473 Cupredoxin_1: Cupredo 98.5 2.9E-07 6.2E-12 78.3 7.6 70 65-151 35-104 (104)
43 KOG1263 Multicopper oxidases [ 98.5 1.1E-05 2.3E-10 87.8 20.3 78 218-296 430-522 (563)
44 TIGR02656 cyanin_plasto plasto 98.2 7E-06 1.5E-10 69.0 9.1 82 65-152 17-99 (99)
45 TIGR03095 rusti_cyanin rusticy 98.2 5.6E-06 1.2E-10 74.6 8.6 90 454-559 52-148 (148)
46 TIGR02657 amicyanin amicyanin. 98.2 7.9E-06 1.7E-10 66.2 8.6 73 65-152 11-83 (83)
47 PF00394 Cu-oxidase: Multicopp 98.2 7.5E-06 1.6E-10 75.3 8.6 95 452-560 58-157 (159)
48 PRK02888 nitrous-oxide reducta 98.1 1.8E-05 4E-10 85.6 10.2 100 44-154 532-635 (635)
49 PF00127 Copper-bind: Copper b 98.0 1.8E-05 3.8E-10 66.6 7.7 82 65-152 17-99 (99)
50 PF06525 SoxE: Sulfocyanin (So 97.9 0.00025 5.3E-09 65.6 12.7 102 54-156 74-190 (196)
51 TIGR03094 sulfo_cyanin sulfocy 97.8 0.00021 4.6E-09 64.6 10.8 100 56-156 75-189 (195)
52 TIGR02656 cyanin_plasto plasto 97.6 0.00027 5.9E-09 59.3 7.6 83 454-559 17-99 (99)
53 TIGR02375 pseudoazurin pseudoa 97.4 0.00088 1.9E-08 57.6 8.9 75 65-155 15-90 (116)
54 COG3794 PetE Plastocyanin [Ene 97.4 0.00085 1.8E-08 58.3 8.8 75 65-153 54-128 (128)
55 TIGR03102 halo_cynanin halocya 97.4 0.0012 2.7E-08 56.6 9.1 73 65-152 42-115 (115)
56 PF00127 Copper-bind: Copper b 97.2 0.0015 3.2E-08 54.8 7.4 83 454-559 17-99 (99)
57 TIGR03096 nitroso_cyanin nitro 97.2 0.002 4.3E-08 56.4 8.2 60 454-544 61-120 (135)
58 PRK02888 nitrous-oxide reducta 96.7 0.0073 1.6E-07 66.0 9.2 79 454-560 555-634 (635)
59 PF13473 Cupredoxin_1: Cupredo 96.5 0.012 2.5E-07 49.9 7.6 60 218-295 35-94 (104)
60 PRK02710 plastocyanin; Provisi 96.0 0.027 5.9E-07 48.9 7.6 73 454-559 47-119 (119)
61 TIGR02375 pseudoazurin pseudoa 95.8 0.047 1E-06 47.0 7.8 41 522-566 54-94 (116)
62 COG4454 Uncharacterized copper 95.3 0.24 5.3E-06 44.1 10.8 87 62-153 60-158 (158)
63 PRK10378 inactive ferrous ion 95.0 0.21 4.6E-06 51.8 11.0 75 65-155 44-119 (375)
64 TIGR02695 azurin azurin. Azuri 94.9 0.13 2.7E-06 44.4 7.6 86 65-150 16-124 (125)
65 PF00116 COX2: Cytochrome C ox 94.4 0.28 6E-06 42.6 8.8 72 65-151 46-119 (120)
66 TIGR02657 amicyanin amicyanin. 94.3 0.27 5.9E-06 39.6 7.9 73 454-559 11-83 (83)
67 COG4454 Uncharacterized copper 94.1 0.09 1.9E-06 46.8 5.0 93 456-559 65-157 (158)
68 TIGR03102 halo_cynanin halocya 93.3 0.45 9.8E-06 40.9 7.8 74 454-559 42-115 (115)
69 TIGR02866 CoxB cytochrome c ox 91.6 1.6 3.4E-05 41.7 10.1 76 65-155 117-194 (201)
70 PF00116 COX2: Cytochrome C ox 91.6 2 4.4E-05 37.2 9.9 74 453-558 45-119 (120)
71 PF06525 SoxE: Sulfocyanin (So 91.4 2.4 5.3E-05 39.6 10.6 99 453-561 85-188 (196)
72 TIGR02866 CoxB cytochrome c ox 90.4 1.6 3.5E-05 41.6 8.9 77 453-561 116-193 (201)
73 TIGR03094 sulfo_cyanin sulfocy 89.0 3.4 7.3E-05 38.0 9.2 99 453-561 84-187 (195)
74 COG3794 PetE Plastocyanin [Ene 88.9 1.9 4.1E-05 37.7 7.3 74 455-560 55-128 (128)
75 PF12690 BsuPI: Intracellular 88.4 6 0.00013 31.7 9.4 66 227-293 3-82 (82)
76 COG1622 CyoA Heme/copper-type 85.9 4.3 9.2E-05 39.9 8.7 77 65-156 137-215 (247)
77 COG1622 CyoA Heme/copper-type 79.8 7.6 0.00016 38.2 7.8 79 453-563 136-215 (247)
78 COG4263 NosZ Nitrous oxide red 76.4 3.1 6.8E-05 43.5 4.1 77 65-152 558-636 (637)
79 PF12690 BsuPI: Intracellular 75.9 7.1 0.00015 31.3 5.3 60 75-134 4-80 (82)
80 PF05506 DUF756: Domain of unk 71.2 32 0.00069 27.8 8.3 55 64-125 8-65 (89)
81 PF10633 NPCBM_assoc: NPCBM-as 68.7 6.7 0.00014 30.9 3.6 60 70-133 2-70 (78)
82 COG1470 Predicted membrane pro 67.4 1.8E+02 0.0039 31.2 17.8 180 67-298 278-470 (513)
83 PF01835 A2M_N: MG2 domain; I 67.3 22 0.00048 29.2 6.7 71 221-295 10-85 (99)
84 MTH00140 COX2 cytochrome c oxi 65.3 1.1E+02 0.0024 29.6 12.1 76 65-155 140-217 (228)
85 MTH00140 COX2 cytochrome c oxi 65.1 31 0.00066 33.6 8.1 77 453-561 139-216 (228)
86 MTH00047 COX2 cytochrome c oxi 64.9 51 0.0011 31.2 9.3 76 454-561 116-192 (194)
87 TIGR03079 CH4_NH3mon_ox_B meth 62.9 51 0.0011 34.0 9.2 59 61-125 278-352 (399)
88 PF10633 NPCBM_assoc: NPCBM-as 60.9 43 0.00093 26.2 6.9 66 223-295 2-75 (78)
89 PTZ00047 cytochrome c oxidase 58.8 53 0.0011 30.0 7.7 76 453-560 72-148 (162)
90 PRK10378 inactive ferrous ion 56.6 45 0.00097 34.9 7.9 73 199-295 33-105 (375)
91 PF04151 PPC: Bacterial pre-pe 55.0 63 0.0014 24.6 6.8 65 218-294 5-69 (70)
92 PF07705 CARDB: CARDB; InterP 54.0 1.1E+02 0.0025 24.5 9.8 66 221-295 14-83 (101)
93 MTH00129 COX2 cytochrome c oxi 52.1 2.3E+02 0.0051 27.5 12.1 74 66-154 141-216 (230)
94 TIGR01433 CyoA cytochrome o ub 50.4 41 0.00089 32.7 6.2 60 218-296 139-198 (226)
95 MTH00047 COX2 cytochrome c oxi 49.9 56 0.0012 30.9 6.8 59 219-296 117-175 (194)
96 PF04744 Monooxygenase_B: Mono 48.6 38 0.00082 35.0 5.7 59 61-125 259-333 (381)
97 PF05938 Self-incomp_S1: Plant 48.6 60 0.0013 27.3 6.3 70 76-155 2-72 (110)
98 COG2967 ApaG Uncharacterized p 45.3 27 0.00058 29.8 3.4 55 77-132 34-96 (126)
99 TIGR01433 CyoA cytochrome o ub 44.9 94 0.002 30.2 7.7 76 454-561 139-215 (226)
100 TIGR01432 QOXA cytochrome aa3 42.2 54 0.0012 31.5 5.6 60 218-296 130-189 (217)
101 MTH00008 COX2 cytochrome c oxi 42.0 1.4E+02 0.0031 28.9 8.5 76 453-560 139-215 (228)
102 MTH00023 COX2 cytochrome c oxi 41.8 1.3E+02 0.0028 29.5 8.2 77 453-561 150-227 (240)
103 PF04379 DUF525: Protein of un 41.7 61 0.0013 26.5 4.9 49 227-278 15-67 (90)
104 COG3354 FlaG Putative archaeal 39.0 2E+02 0.0042 25.7 7.8 64 226-294 70-141 (154)
105 KOG4063 Major epididymal secre 38.5 2.2E+02 0.0048 25.6 8.2 61 65-125 48-122 (158)
106 PTZ00047 cytochrome c oxidase 38.5 1.2E+02 0.0026 27.7 6.7 58 219-295 74-131 (162)
107 PF14524 Wzt_C: Wzt C-terminal 38.4 1.3E+02 0.0027 26.0 7.1 73 220-295 29-107 (142)
108 PF11322 DUF3124: Protein of u 36.8 1.1E+02 0.0024 26.6 5.9 54 228-285 27-80 (125)
109 TIGR01432 QOXA cytochrome aa3 35.6 1.4E+02 0.003 28.7 7.3 76 454-561 130-206 (217)
110 MTH00008 COX2 cytochrome c oxi 34.7 1.1E+02 0.0024 29.7 6.5 58 219-295 141-198 (228)
111 TIGR02695 azurin azurin. Azuri 33.7 3.2E+02 0.007 23.8 9.4 95 455-557 17-124 (125)
112 PF10989 DUF2808: Protein of u 32.6 51 0.0011 29.6 3.5 26 520-545 99-128 (146)
113 PRK05461 apaG CO2+/MG2+ efflux 31.7 1.3E+02 0.0028 26.3 5.7 50 227-279 32-85 (127)
114 MTH00038 COX2 cytochrome c oxi 31.6 2.6E+02 0.0056 27.2 8.5 76 453-560 139-215 (229)
115 MTH00185 COX2 cytochrome c oxi 30.9 3E+02 0.0064 26.8 8.7 76 453-560 139-215 (230)
116 MTH00098 COX2 cytochrome c oxi 30.9 2.6E+02 0.0057 27.1 8.4 76 453-560 139-215 (227)
117 COG1188 Ribosome-associated he 30.8 37 0.00079 28.2 2.0 31 55-85 35-65 (100)
118 cd00918 Der-p2_like Several gr 30.4 2.3E+02 0.005 24.4 7.1 61 64-125 19-87 (120)
119 MTH00154 COX2 cytochrome c oxi 30.2 1.8E+02 0.004 28.2 7.1 59 218-295 140-198 (227)
120 MTH00098 COX2 cytochrome c oxi 30.1 1.4E+02 0.003 29.0 6.3 58 219-295 141-198 (227)
121 cd00916 Npc2_like Niemann-Pick 29.7 2.3E+02 0.0049 24.5 7.0 61 65-125 22-91 (123)
122 MTH00051 COX2 cytochrome c oxi 29.5 1.6E+02 0.0034 28.8 6.5 59 218-295 144-202 (234)
123 PF07691 PA14: PA14 domain; I 29.4 3.3E+02 0.0071 23.5 8.3 60 220-284 54-120 (145)
124 MTH00139 COX2 cytochrome c oxi 29.1 1.8E+02 0.004 28.1 6.9 77 452-560 138-215 (226)
125 PRK10525 cytochrome o ubiquino 29.0 1E+02 0.0022 31.5 5.3 60 219-297 152-211 (315)
126 PF11142 DUF2917: Protein of u 27.3 1.7E+02 0.0038 22.0 5.1 30 220-254 2-31 (63)
127 PF05753 TRAP_beta: Translocon 26.3 4.4E+02 0.0095 24.6 8.6 24 110-133 80-104 (181)
128 MTH00185 COX2 cytochrome c oxi 25.5 2.2E+02 0.0047 27.7 6.7 59 218-295 140-198 (230)
129 PF11614 FixG_C: IG-like fold 25.3 2.2E+02 0.0048 24.1 6.1 49 227-283 34-83 (118)
130 MTH00129 COX2 cytochrome c oxi 25.3 2.9E+02 0.0063 26.9 7.6 76 453-560 139-215 (230)
131 PF14326 DUF4384: Domain of un 24.9 3.5E+02 0.0075 21.3 8.1 15 222-236 3-17 (83)
132 PRK13202 ureB urease subunit b 24.8 2.4E+02 0.0052 23.6 5.7 61 219-283 12-85 (104)
133 PF05506 DUF756: Domain of unk 24.5 3.7E+02 0.008 21.5 10.4 59 226-295 20-78 (89)
134 MTH00051 COX2 cytochrome c oxi 23.7 4.1E+02 0.0089 25.9 8.3 76 453-560 143-219 (234)
135 PF10989 DUF2808: Protein of u 23.4 2.1E+02 0.0045 25.6 5.8 31 269-299 98-131 (146)
136 PRK10525 cytochrome o ubiquino 23.4 3.1E+02 0.0066 28.1 7.5 74 454-559 151-225 (315)
137 MTH00076 COX2 cytochrome c oxi 23.0 4.3E+02 0.0093 25.6 8.3 76 453-560 139-215 (228)
138 PF14874 PapD-like: Flagellar- 23.0 4.1E+02 0.0089 21.5 8.1 64 221-291 15-82 (102)
139 smart00758 PA14 domain in bact 22.8 4.9E+02 0.011 22.3 8.3 60 220-284 52-112 (136)
140 MTH00117 COX2 cytochrome c oxi 22.8 4.5E+02 0.0098 25.4 8.4 76 453-560 139-215 (227)
141 TIGR03396 PC_PLC phospholipase 22.7 4.1E+02 0.009 30.4 9.1 67 63-138 592-661 (690)
142 MTH00117 COX2 cytochrome c oxi 21.7 3.3E+02 0.0073 26.4 7.2 58 219-295 141-198 (227)
143 MTH00023 COX2 cytochrome c oxi 21.0 3E+02 0.0066 26.9 6.8 59 218-295 151-209 (240)
144 PF14392 zf-CCHC_4: Zinc knuck 20.9 1.3E+02 0.0028 21.3 3.1 33 518-550 13-45 (49)
145 TIGR00192 urease_beta urease, 20.3 3.1E+02 0.0068 22.8 5.5 61 219-283 12-84 (101)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=4.1e-104 Score=859.94 Aligned_cols=533 Identities=62% Similarity=1.118 Sum_probs=438.4
Q ss_pred cceeEEEE-EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCccccc
Q 039963 33 AEIQFHEF-IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQC 111 (578)
Q Consensus 33 ~~~~~~~l-~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~ 111 (578)
|++|+|+| +++..+++||+++.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++.+++|+||++++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 46899999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEecCCCcceeEecccccccccceEEEEEecCCCCCCCCCCCCCceeeeecccccCChHHHHHHHHhcC
Q 039963 112 PIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRATVYGAIIIYPRIGSSYPFPVPNREIPILLGEWWDKNPMDVLMQAIFTG 191 (578)
Q Consensus 112 ~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~~g 191 (578)
+|+||++++|+|++++++||||||||...+++||+|+|||+++.+.++++..+|+|++|+++||++....+.+......+
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998569999999999988888999999999987766777778999999999999998877766655556
Q ss_pred CCCCCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEc
Q 039963 192 AAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIA 271 (578)
Q Consensus 192 ~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~ 271 (578)
..+..+++++|||+.++.+.|+....+.+++++||+|||||||+|+...+.|+|+||+|+||++||.+++|+.++++.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 55667799999999988888987778899999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEEEeCCCCceeEEEEeecccccccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhcc
Q 039963 272 PGQTTNVLLTADQPPARYYMAARAYNSANVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTATATAYTAQ 351 (578)
Q Consensus 272 pger~dv~v~~~~~~G~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 351 (578)
+||||||+|++++.+|+|+|+.....++...+......|+|+|++.... ..+..+..+..++......+..+
T Consensus 241 ~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~--------~~p~~~~~~~~~~~~~~~~~~~~ 312 (539)
T TIGR03389 241 PGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNS--------AKPILPTLPAYNDTAAATNFSNK 312 (539)
T ss_pred CCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCC--------CCCCCCCCCCCCchhhhhHHHhh
Confidence 9999999999998889999999876544322345678999999886541 11112222223322222122222
Q ss_pred cccCC----CCCCCCccceEEEEEeecccccCCCCCCCCccCCCCCeeeEeecceeecCCCcchhhhhhccCCCCcccCC
Q 039963 352 IRSLH----EVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSFEFPTGNSLMQAYFQDQPGVFTTD 427 (578)
Q Consensus 352 l~~l~----p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~ll~~~~~~~~g~~~~~ 427 (578)
++.+. +..+|...+.++++.+.+....+. ...+...++..+.|++|+.+|..|.. |+|.+.+.+..|.+..+
T Consensus 313 l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~w~in~~s~~~p~~-p~l~~~~~~~~~~~~~~ 388 (539)
T TIGR03389 313 LRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCP---NNTCQGPNGTRFAASMNNISFVMPTT-ALLQAHYFGISGVFTTD 388 (539)
T ss_pred cccccccCCCCCCCCCCCeEEEEEeecccccCc---ccccccCCCcEEEEEECCcccCCCCc-chhhhhhcccCCccccC
Confidence 33332 223334567776666655432111 00112224557899999999998888 56666665556777777
Q ss_pred CCCCCCccccCCCCC-cccccccCCCceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCC
Q 039963 428 FPPVPPIKFDYTGNV-SRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPK 506 (578)
Q Consensus 428 ~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~ 506 (578)
++..+|..|++++.. +.++ ....+++++.++.|++|||+|+|.+.+....||||||||+||||++|.|.|+..+....
T Consensus 389 ~~~~~p~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~ 467 (539)
T TIGR03389 389 FPANPPTKFNYTGTNLPNNL-FTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAK 467 (539)
T ss_pred CccCCCccccCCCCCccccc-ccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccc
Confidence 888888888766642 2121 12346789999999999999999753335589999999999999999999987655567
Q ss_pred CCCCCCCcceeEEeCCCcEEEEEEEeCCceeEEEEeechhhHhccceEEEEEecCcchhcccCCCCCCCCCC
Q 039963 507 FNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDEELQAVQSPPLDLPPC 578 (578)
Q Consensus 507 ~~~~~p~~rDTv~vpp~~~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~~~~~~~c 578 (578)
+|+.+|++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+.++.++.++++++|.+++.|
T Consensus 468 ~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 468 FNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred cccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 999999999999999999999999999999999999999999999999999988888888999999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=5e-102 Score=835.43 Aligned_cols=515 Identities=28% Similarity=0.437 Sum_probs=418.3
Q ss_pred ccccceeEEEE-EEEeeecCCc--eeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCC
Q 039963 30 LSHAEIQFHEF-IEAKPVKRLC--RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPE 106 (578)
Q Consensus 30 ~a~~~~~~~~l-~~~~~~~~~g--~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~ 106 (578)
.|.+++++|+| +++..+++|| ..+++++|||++|||+|++++||+|+|+|+|+++++++|||||++|..++|+||++
T Consensus 22 ~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~ 101 (596)
T PLN00044 22 GAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVG 101 (596)
T ss_pred ccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCC
Confidence 45678899999 9999999999 55789999999999999999999999999999999999999999999999999998
Q ss_pred cccccccCCCCeEEEEEEecCCCcceeEecccccccc-cceEEEEEecCCCCCCCCCCCC-CceeeeecccccCChHHHH
Q 039963 107 YVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA-TVYGAIIIYPRIGSSYPFPVPN-REIPILLGEWWDKNPMDVL 184 (578)
Q Consensus 107 ~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~d-~e~~l~~~d~~~~~~~~~~ 184 (578)
+ +||||+||++|+|+|++++++||||||+|...|++ ||+|+|||++++..+.|+..++ +|.+++++||++.+... +
T Consensus 102 ~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~-~ 179 (596)
T PLN00044 102 G-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRA-L 179 (596)
T ss_pred C-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHH-H
Confidence 7 99999999999999998678999999999999986 9999999999877666665544 79999999999988654 3
Q ss_pred HHHHhcCCCCCCCceEEEcCcCCCCCCCC----CCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCccc
Q 039963 185 MQAIFTGAAPNVSDAFTINGQPGDLYRCS----RRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYT 260 (578)
Q Consensus 185 ~~~~~~g~~~~~~~~~liNG~~~~~~~~~----~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~ 260 (578)
......|..+..++.++|||+....++|. +...+.++|++|++|||||||++....+.|+|+||+|+||++||.++
T Consensus 180 ~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v 259 (596)
T PLN00044 180 RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYT 259 (596)
T ss_pred HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCccc
Confidence 44555565556689999999965445554 23446899999999999999999999999999999999999999999
Q ss_pred ceeEeeEEEEccCceEEEEEEeCCCCc-eeEEEEeec-ccccccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCC
Q 039963 261 KAFSTSVIMIAPGQTTNVLLTADQPPA-RYYMAARAY-NSANVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPG 338 (578)
Q Consensus 261 ~p~~~d~v~l~pger~dv~v~~~~~~G-~y~i~~~~~-~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~ 338 (578)
+|+.+++|.|++||||||+|++++.++ +|||+.... ..+ ..++.....|||+|.++... .....|..|.
T Consensus 260 ~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~-~~~~~~~~~AIl~Y~~~~~~--------~~~~~P~~p~ 330 (596)
T PLN00044 260 SQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDA-AVVDKLTGVAILHYSNSQGP--------ASGPLPDAPD 330 (596)
T ss_pred CceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccC-ccccCcceeEEEEECCCCCC--------CCCCCCCCCc
Confidence 999999999999999999999998765 899998642 222 22456778999999885431 1111344453
Q ss_pred -CCCchhhhhhhcccccCCC----CCCCCccceEEEEEeeccc-ccCCCCCCCCccCCCCCeeeEeecceeecCCCcchh
Q 039963 339 -FNDTATATAYTAQIRSLHE----VKVPTVIDEDLFFTVGLGL-INCSNPNSPRCQGPNGTRFAASINNVSFEFPTGNSL 412 (578)
Q Consensus 339 -~~~~~~~~~~~~~l~~l~p----~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~l 412 (578)
+.++....++...++.+.. .+.+...+....+.+.... ..+. ....| .+ .+.|++||.+|..|++ |+
T Consensus 331 ~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~---~g-~~~~s~Nnvsf~~p~~-p~ 403 (596)
T PLN00044 331 DQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSM--APELI---DG-KLRATLNEISYIAPST-PL 403 (596)
T ss_pred ccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccc--ccccc---CC-eEEEEECcccCCCCCC-cc
Confidence 5555444334344443321 2222233333333332111 0010 00112 12 6899999999999988 77
Q ss_pred hhhhccCCCCcccCCCCCCCCccccCCCCCcccccccCCCceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEE
Q 039963 413 MQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVG 492 (578)
Q Consensus 413 l~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~ 492 (578)
|.+++++.+|.+.++|+..+|.. .....+.++.+++|++|||+|+|.. ...||||||||+|+||+
T Consensus 404 L~a~~~~~~gv~~~~fp~~pp~~------------~~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~F~Vvg 468 (596)
T PLN00044 404 MLAQIFNVPGVFKLDFPNHPMNR------------LPKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYAFFVVG 468 (596)
T ss_pred hhhhhccCCCcccCCCCCCCCcc------------ccccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCccEEEEe
Confidence 77777777899999998887731 1123577899999999999999954 46899999999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeCCceeEEEEeechhhHhccceEEEEEecCcch-hcccCCC
Q 039963 493 SGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDEE-LQAVQSP 571 (578)
Q Consensus 493 ~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~-~~~~~~~ 571 (578)
.|.|+|++. +...||+.||++|||+.|+++||++|||++||||.|++||||+.|...||..+|.|+++.+. .+++++|
T Consensus 469 ~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~p 547 (596)
T PLN00044 469 MDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPI 547 (596)
T ss_pred ecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCC
Confidence 999999965 46689999999999999999999999999999999999999999999999999999999876 8899999
Q ss_pred CCCCCCC
Q 039963 572 PLDLPPC 578 (578)
Q Consensus 572 ~~~~~~c 578 (578)
|.+++.|
T Consensus 548 P~~~~~C 554 (596)
T PLN00044 548 PDNAIFC 554 (596)
T ss_pred CcccCcc
Confidence 9999999
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=9.1e-101 Score=821.65 Aligned_cols=498 Identities=26% Similarity=0.423 Sum_probs=402.9
Q ss_pred hhcccccceeEEEE-EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCC
Q 039963 27 VASLSHAEIQFHEF-IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGP 105 (578)
Q Consensus 27 ~~~~a~~~~~~~~l-~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~ 105 (578)
++..|.+++++|+| +++..+++||+++++++|||++|||+|++++||+|+|+|+|+|+++++|||||+++.+++|+||+
T Consensus 20 ~~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv 99 (543)
T PLN02991 20 SFVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGV 99 (543)
T ss_pred hhhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCC
Confidence 33445578999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCeEEEEEEecCCCcceeEecccccccc-cceEEEEEecCCCCCCCCCCCCCceeeeecccccCChHHHH
Q 039963 106 EYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA-TVYGAIIIYPRIGSSYPFPVPNREIPILLGEWWDKNPMDVL 184 (578)
Q Consensus 106 ~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~ 184 (578)
++ +||||+||++|+|+|++++++||||||+|...+++ ||+|+|||+++..++.|+..+|+|++++++||++.......
T Consensus 100 ~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~ 178 (543)
T PLN02991 100 YG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLR 178 (543)
T ss_pred CC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHH
Confidence 98 99999999999999998668999999999988886 99999999998766667667789999999999998765543
Q ss_pred HHHHhcCCCCCCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeE
Q 039963 185 MQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFS 264 (578)
Q Consensus 185 ~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~ 264 (578)
.. ...+.....++.+||||+.. .+.+++++|++|||||||++....+.|+|+||+|+||++||.+++|..
T Consensus 179 ~~-~~~~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~ 248 (543)
T PLN02991 179 AQ-LDNGGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTP 248 (543)
T ss_pred HH-hhcCCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCcccccee
Confidence 33 33444455789999999963 257999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCceEEEEEEeCCCCceeEEEEeecccccccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCc--
Q 039963 265 TSVIMIAPGQTTNVLLTADQPPARYYMAARAYNSANVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDT-- 342 (578)
Q Consensus 265 ~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~-- 342 (578)
++++.|++||||||+|++++++|+|||+....... ......|||+|++...... ...|..|.....
T Consensus 249 ~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~~~~--------~~~p~~p~~~~~~~ 316 (543)
T PLN02991 249 FSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTS----KILITTGVLHYSNSAGPVS--------GPIPDGPIQLSWSF 316 (543)
T ss_pred eeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCC----CCcceEEEEEeCCCCCCCC--------CCCCCCCccccccc
Confidence 99999999999999999999889999998863221 3356789999998653110 011221111111
Q ss_pred hhhhhhhcccccCCCCCCCCccc--------eEEEEEeecccccCCCCCCCCccCCCCCeeeEeecceeecCCCcchhhh
Q 039963 343 ATATAYTAQIRSLHEVKVPTVID--------EDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSFEFPTGNSLMQ 414 (578)
Q Consensus 343 ~~~~~~~~~l~~l~p~~~p~~~d--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~ll~ 414 (578)
....+....+.+..+.+.|...+ ..+.+...+. .+ ++ .+.|++||.+|..|+. |+|.
T Consensus 317 ~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~~---~g-~~~~~iN~~s~~~p~~-p~L~ 381 (543)
T PLN02991 317 DQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAG----------NI---EG-KQRYAVNSASFYPADT-PLKL 381 (543)
T ss_pred cchhhhhhcccCCCCCCCCCccccccccccceeEEEeeccc----------cc---Cc-eEEEEECCCccCCCCC-Chhh
Confidence 00112223333332233332211 1121211111 11 22 5789999999998888 6666
Q ss_pred hhccCCCCcccCC-CCCCCCccccCCCCCcccccccCCCceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEe
Q 039963 415 AYFQDQPGVFTTD-FPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGS 493 (578)
Q Consensus 415 ~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~ 493 (578)
+.+++.+|.+..+ ++..+|.. .....+.++.+++|++|||+|+|.. ...||||||||+|+||++
T Consensus 382 ~~~~~~~g~~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~ 446 (543)
T PLN02991 382 ADYFKIAGVYNPGSIPDQPTNG------------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGM 446 (543)
T ss_pred hhhhcccCccccccccccCCCC------------ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEe
Confidence 6666667877665 55444311 0112456889999999999999965 458999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeCCceeEEEEeechhhHhccceEEEEEecCcchhcccCCCCC
Q 039963 494 GFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDEELQAVQSPPL 573 (578)
Q Consensus 494 g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~~~ 573 (578)
|.|.|++. +...+|+.||++|||+.||++||++|||++||||.|+|||||..|+..||..++.|.++.+..+.+++||.
T Consensus 447 G~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~ 525 (543)
T PLN02991 447 ELGKWSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPK 525 (543)
T ss_pred CCCCCCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCc
Confidence 99999876 45789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 039963 574 DLPPC 578 (578)
Q Consensus 574 ~~~~c 578 (578)
+++.|
T Consensus 526 ~~~~C 530 (543)
T PLN02991 526 NALLC 530 (543)
T ss_pred ccCcc
Confidence 99999
No 4
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.6e-100 Score=825.19 Aligned_cols=514 Identities=23% Similarity=0.418 Sum_probs=404.0
Q ss_pred HHHHHHHhhhcccccceeEEEE-EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccC
Q 039963 19 GVLFIFAFVASLSHAEIQFHEF-IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLK 97 (578)
Q Consensus 19 ~~~~~~~~~~~~a~~~~~~~~l-~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~ 97 (578)
+|+++.++....+.+++++|+| +++...++||+.+++++||||+|||+|++++||+|+|+|+|+++++++|||||+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~ 90 (552)
T PLN02354 11 LCLAAAVALVVRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQR 90 (552)
T ss_pred HHHHHHHHHhhhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCC
Confidence 3333333344455578899999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEecccccccc-cceEEEEEecCCCCCCCCCCCCCceeeeecccc
Q 039963 98 GNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA-TVYGAIIIYPRIGSSYPFPVPNREIPILLGEWW 176 (578)
Q Consensus 98 ~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~ 176 (578)
.++|+||+++ +||||+||++|+|+|++.+++||||||+|...|++ ||+|+|||+++...+.+++.+|+|++++++||+
T Consensus 91 ~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~ 169 (552)
T PLN02354 91 KNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWY 169 (552)
T ss_pred CCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeec
Confidence 9999999999 99999999999999998668999999999999986 999999999987666677677899999999999
Q ss_pred cCChHHHHHHHHhcCCCCCCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeec
Q 039963 177 DKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVD 256 (578)
Q Consensus 177 ~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~D 256 (578)
+....... .....+.....++.+||||+....+. ...+.+++++||+|||||||+|....+.|+|+||+|+||++|
T Consensus 170 ~~~~~~~~-~~~~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~D 245 (552)
T PLN02354 170 TKSHTALK-KFLDSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEME 245 (552)
T ss_pred cCCHHHHH-HHHhcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeC
Confidence 98765533 34444544456799999999753321 235789999999999999999999999999999999999999
Q ss_pred CcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEeecccccccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCC
Q 039963 257 TSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARAYNSANVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTL 336 (578)
Q Consensus 257 G~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~ 336 (578)
|.+++|..+++|.|++||||||+|++++++|+|+|+....... ......|+|+|++..... .+..|..
T Consensus 246 G~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~--------~~~~p~~ 313 (552)
T PLN02354 246 GSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLK----KVLTTTGIIRYEGGKGPA--------SPELPEA 313 (552)
T ss_pred CcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccC----CCccEEEEEEECCCCCCC--------CCCCCCC
Confidence 9999999999999999999999999998889999998742221 345779999998864311 1112221
Q ss_pred CC-CC-CchhhhhhhcccccCCCCCCCC--------ccceEEEEEeecccccCCCCCCCCccCCCCCeeeEeecceeecC
Q 039963 337 PG-FN-DTATATAYTAQIRSLHEVKVPT--------VIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSFEF 406 (578)
Q Consensus 337 p~-~~-~~~~~~~~~~~l~~l~p~~~p~--------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~ 406 (578)
+. .. ......++..++......+.+. ..+.++.+...+. .+ ++ .+.|++||.+|..
T Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----------~~---~g-~~~~~iNn~s~~~ 379 (552)
T PLN02354 314 PVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSAS----------KV---DG-KLRYALNGVSHVD 379 (552)
T ss_pred CcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccc----------cC---Cc-eEEEEECCccCCC
Confidence 11 00 0001111112222211111111 1122222222111 01 22 5789999999999
Q ss_pred CCcchhhhhhccCC-CCcccCC-CCCCCCccccCCCCCcccccccCCCceEEEeeCCCEEEEEEEeCCCCCCCCCCcccc
Q 039963 407 PTGNSLMQAYFQDQ-PGVFTTD-FPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLH 484 (578)
Q Consensus 407 p~~~~ll~~~~~~~-~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlH 484 (578)
|+.| +|.+.+.+. .|.+..+ ++..+|..++. ...+++++.+++|++|||+|+|.. ...||||||
T Consensus 380 p~~P-~L~~~~~~~~~g~~~~~~~~~~pp~~~~~----------~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLH 445 (552)
T PLN02354 380 PETP-LKLAEYFGVADKVFKYDTIKDNPPAKITK----------IKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLD 445 (552)
T ss_pred CCCC-hHHhhhhcccCCccccCccccCCccccCc----------cccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCC
Confidence 9884 444433322 3655544 44455533221 123567889999999999999964 568999999
Q ss_pred CCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeCCceeEEEEeechhhHhccceEEEEEecCcch
Q 039963 485 GHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDEE 564 (578)
Q Consensus 485 G~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~ 564 (578)
||+||||++|.|.|+++ ....+|+.||++|||+.||++||++|||++||||.|+|||||+.|+..||.++|.|.|+.+.
T Consensus 446 Gh~F~Vlg~G~G~~~~~-~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~ 524 (552)
T PLN02354 446 GYSFFAVAVEPGTWTPE-KRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERS 524 (552)
T ss_pred CccEEEEeecCCCCCcc-ccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccc
Confidence 99999999999999875 35689999999999999999999999999999999999999999999999999999999988
Q ss_pred hcccCCCCCCCCCC
Q 039963 565 LQAVQSPPLDLPPC 578 (578)
Q Consensus 565 ~~~~~~~~~~~~~c 578 (578)
.++++.+|.+.+.|
T Consensus 525 ~~~~~~~P~~~~~C 538 (552)
T PLN02354 525 LRDEYNMPENALLC 538 (552)
T ss_pred cCcCCCCCcccccc
Confidence 89999999999999
No 5
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-100 Score=811.66 Aligned_cols=536 Identities=49% Similarity=0.868 Sum_probs=472.6
Q ss_pred HHHHHHHhhhcccccceeEEEE-EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccC
Q 039963 19 GVLFIFAFVASLSHAEIQFHEF-IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLK 97 (578)
Q Consensus 19 ~~~~~~~~~~~~a~~~~~~~~l-~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~ 97 (578)
.|+++++.+...|.++.+.++| +++..+.++|.+++++++||++|||+|++++||+|+|+|.|.++++++|||||+++.
T Consensus 12 ~~~~~~~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~ 91 (563)
T KOG1263|consen 12 LCGSLLLVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQR 91 (563)
T ss_pred HHHHHHHHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEecccccc
Confidence 3445555666788999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEecccccccc-cceEEEEEecCCCCCCCCCCCCCceeeeecccc
Q 039963 98 GNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA-TVYGAIIIYPRIGSSYPFPVPNREIPILLGEWW 176 (578)
Q Consensus 98 ~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~ 176 (578)
.++|+|| +.+|||||+||++|+|+|+++++.||||||+|...+++ |++|+|||+++...++|++++|+|++|+++|||
T Consensus 92 kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~ 170 (563)
T KOG1263|consen 92 KNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWY 170 (563)
T ss_pred CCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeec
Confidence 9999999 89999999999999999999889999999999999997 999999999999888999999999999999999
Q ss_pred cC-ChHHHHHHHHhcCCCCCCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEee
Q 039963 177 DK-NPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGV 255 (578)
Q Consensus 177 ~~-~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~ 255 (578)
.+ ....+....+..+..+..+|..+|||+.+..|+| .+.+++++||+|||||+|+|.+..+.|+|.||+|+||++
T Consensus 171 ~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~ 246 (563)
T KOG1263|consen 171 KNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEV 246 (563)
T ss_pred cccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEe
Confidence 96 7776666666667666668999999999989999 689999999999999999999999999999999999999
Q ss_pred cCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEeecccccccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCC
Q 039963 256 DTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARAYNSANVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPT 335 (578)
Q Consensus 256 DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~ 335 (578)
||.+++|..++++.|.||||++|++++++.+++|+|....+.++.....+....++++|.+....+. .+.+..+.
T Consensus 247 Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s-----~~~~~~~~ 321 (563)
T KOG1263|consen 247 DGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPAS-----EKLPIYPF 321 (563)
T ss_pred cceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCc-----ccCccccc
Confidence 9999999999999999999999999999999999999998776533222788999999998443211 12233345
Q ss_pred CCCCCCchhhhhhhcccccCC----CCCCCCccceEEEEEeecccccCCCCCCCCccCCCCCeeeEeecceeecCCCcch
Q 039963 336 LPGFNDTATATAYTAQIRSLH----EVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSFEFPTGNS 411 (578)
Q Consensus 336 ~p~~~~~~~~~~~~~~l~~l~----p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~ 411 (578)
+|...+...+..+...++.+. +...|+..++......+.+...|+... ..+.+..+++|+.+|..|++|.
T Consensus 322 ~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~siN~isf~~P~tp~ 395 (563)
T KOG1263|consen 322 LPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN------KNNGKLRASINNISFVTPKTPS 395 (563)
T ss_pred CCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC------CCCcEEEEEEcceEEECCCCch
Confidence 566566666666666777663 556677777777777777666664210 3456788999999999999978
Q ss_pred hhhhhccCCCCcccCCCCCCCCccccCCCCCcccccccCCCceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEE
Q 039963 412 LMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVV 491 (578)
Q Consensus 412 ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl 491 (578)
++.+.+....|.+..+++..||..|++++ .+.++.++.++++++||++|+|.+......||||||||.|+||
T Consensus 396 ~l~~~~~~~~~~~~~d~p~~P~~~~~~~~--------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vv 467 (563)
T KOG1263|consen 396 LLAAYFKNIPGYFTNDFPDKPPIKFDYTG--------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVV 467 (563)
T ss_pred hhhhhhccCCccccCccCCCCccccCCcc--------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEE
Confidence 88888877778899999999988887776 2457899999999999999999987777889999999999999
Q ss_pred EeccCCCCCCCCC-CCCCCCCCCcceeEEeCCCcEEEEEEEeCCceeEEEEeechhhHhccceEEEEEecCcchhcccCC
Q 039963 492 GSGFGNFNPSTDT-PKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDEELQAVQS 570 (578)
Q Consensus 492 ~~g~g~~~~~~~~-~~~~~~~p~~rDTv~vpp~~~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~ 570 (578)
+.|.|+|+++++. ..+|+.||+.||||.|||+||++|||.|||||+|++|||+++|...||..+|+|.++.+..+.+.+
T Consensus 468 g~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~ 547 (563)
T KOG1263|consen 468 GYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYP 547 (563)
T ss_pred EecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCC
Confidence 9999999995555 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 039963 571 PPLDLPPC 578 (578)
Q Consensus 571 ~~~~~~~c 578 (578)
||++.+.|
T Consensus 548 ~P~~~~~c 555 (563)
T KOG1263|consen 548 PPKNLPKC 555 (563)
T ss_pred CCCCcccc
Confidence 99999999
No 6
>PLN02835 oxidoreductase
Probab=100.00 E-value=3.6e-100 Score=821.42 Aligned_cols=495 Identities=26% Similarity=0.473 Sum_probs=393.6
Q ss_pred cccccceeEEEE-EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCc
Q 039963 29 SLSHAEIQFHEF-IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEY 107 (578)
Q Consensus 29 ~~a~~~~~~~~l-~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~ 107 (578)
..+.|++++|+| +++..+++||+++++|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++..++|+||+++
T Consensus 23 ~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~ 102 (539)
T PLN02835 23 VNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG 102 (539)
T ss_pred hhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc
Confidence 355678999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEEEecCCCcceeEecccccccc-cceEEEEEecCCCCCCCCCCCCCceeeeecccccCChHHHHHH
Q 039963 108 VTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA-TVYGAIIIYPRIGSSYPFPVPNREIPILLGEWWDKNPMDVLMQ 186 (578)
Q Consensus 108 ~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~ 186 (578)
+||||+||++|+|+|++++++||||||||...|++ ||+|+|||+++...+.+++.+|+|++++++||++........
T Consensus 103 -tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~- 180 (539)
T PLN02835 103 -TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQ- 180 (539)
T ss_pred -CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHH-
Confidence 99999999999999987678999999999998886 999999998765555666678999999999999988665433
Q ss_pred HHhcCCCCCCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEee
Q 039963 187 AIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTS 266 (578)
Q Consensus 187 ~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d 266 (578)
....|.....++.+||||+.. +.+++++|++|||||||+|....+.|+|+||+|+||++||.+++|..++
T Consensus 181 ~~~~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~ 250 (539)
T PLN02835 181 RLDSGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYD 250 (539)
T ss_pred HhhcCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceee
Confidence 333455556789999999976 5799999999999999999999999999999999999999999999999
Q ss_pred EEEEccCceEEEEEEeCCCCceeEEEEeecccccccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCC---Cch
Q 039963 267 VIMIAPGQTTNVLLTADQPPARYYMAARAYNSANVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFN---DTA 343 (578)
Q Consensus 267 ~v~l~pger~dv~v~~~~~~G~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~---~~~ 343 (578)
++.|++||||||+|++++++|+|+|+......+ ......|+|+|.+..... ...+|..|..+ +..
T Consensus 251 ~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~--------~~~~p~~p~~~~~~~~~ 318 (539)
T PLN02835 251 SLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTR----QILTATAVLHYSNSRTPA--------SGPLPALPSGELHWSMR 318 (539)
T ss_pred EEEECcCceEEEEEEcCCCCCcEEEEEEccccC----CCcceEEEEEECCCCCCC--------CCCCCCCCccccccccc
Confidence 999999999999999998889999998642211 235679999998854311 11122222110 111
Q ss_pred hhhhhhcccccCCCCCCCC--------ccceEEEEEeecccccCCCCCCCCccCCCCCeeeEeecceeecCCCcchhhhh
Q 039963 344 TATAYTAQIRSLHEVKVPT--------VIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSFEFPTGNSLMQA 415 (578)
Q Consensus 344 ~~~~~~~~l~~l~p~~~p~--------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~ll~~ 415 (578)
........+........+. ..+.++.+...+. ..+| ...|++||.+|..|+. |+|.+
T Consensus 319 ~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~g-~~~w~iN~~s~~~p~~-P~L~~ 383 (539)
T PLN02835 319 QARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP-------------LING-KQRYAVNGVSYVNSDT-PLKLA 383 (539)
T ss_pred hhhccccccCccccCCCCCccccccccCCCceEEEecccc-------------ccCC-eEEEEECCcccCCCCC-Chhhh
Confidence 1111111122111111111 1122232221111 0122 4789999999998888 55545
Q ss_pred hccCCCCcccCCC-CCCCCccccCCCCCcccccccCCCceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEec
Q 039963 416 YFQDQPGVFTTDF-PPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSG 494 (578)
Q Consensus 416 ~~~~~~g~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g 494 (578)
.+++..|.++.+. ...++ +. ....+++++.+++|++|||+|+|.. ...||||||||+|+||++|
T Consensus 384 ~~~~~~~~~~~~~~~~~~~------~~------~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G 448 (539)
T PLN02835 384 DYFGIPGVFSVNSIQSLPS------GG------PAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYG 448 (539)
T ss_pred hhhcCCCccccCccccCCC------CC------ccccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEecc
Confidence 5444445554331 11111 00 1223578899999999999999965 5689999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeCCceeEEEEeechhhHhccceEEEEEecCcchhcccCCCCCC
Q 039963 495 FGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDEELQAVQSPPLD 574 (578)
Q Consensus 495 ~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~~~~ 574 (578)
.|.|++. ....+|+.||++|||+.|+++||++|||+|||||.|+|||||++|+..||+.+|.|+++.+....+++||.+
T Consensus 449 ~g~~~~~-~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~ 527 (539)
T PLN02835 449 SGQWTPA-KRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDN 527 (539)
T ss_pred CCCCCcc-cccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcc
Confidence 9999765 345688999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred CCCC
Q 039963 575 LPPC 578 (578)
Q Consensus 575 ~~~c 578 (578)
++.|
T Consensus 528 ~~~C 531 (539)
T PLN02835 528 ALLC 531 (539)
T ss_pred cccc
Confidence 9999
No 7
>PLN02792 oxidoreductase
Probab=100.00 E-value=8.4e-100 Score=815.61 Aligned_cols=503 Identities=24% Similarity=0.401 Sum_probs=402.5
Q ss_pred cccceeEEEE-EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCccc
Q 039963 31 SHAEIQFHEF-IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVT 109 (578)
Q Consensus 31 a~~~~~~~~l-~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~ 109 (578)
.+.++++|+| +++...++||+.+++++||||+|||+|++++||+|+|+|+|+|+++++|||||+++..++|+||+++ +
T Consensus 12 ~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-t 90 (536)
T PLN02792 12 KADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-T 90 (536)
T ss_pred hcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-C
Confidence 3445579999 9999999999999999999999999999999999999999999999999999999999999999987 8
Q ss_pred ccccCCCCeEEEEEEecCCCcceeEecccccccc-cceEEEEEecCCCCCCCCCCCCCceeeeecccccCChHHHHHHHH
Q 039963 110 QCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA-TVYGAIIIYPRIGSSYPFPVPNREIPILLGEWWDKNPMDVLMQAI 188 (578)
Q Consensus 110 ~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~ 188 (578)
||||.||++|+|+|++++++||||||+|...+++ ||+|+|||.++...+.+++.+|+|++++++||++.+.... ....
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~-~~~~ 169 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTL-KKIL 169 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHH-HHHh
Confidence 9999999999999998678999999999998886 9999999998765556677789999999999999876553 3333
Q ss_pred hcCCC-CCCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeE
Q 039963 189 FTGAA-PNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSV 267 (578)
Q Consensus 189 ~~g~~-~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~ 267 (578)
..+.. +..++.+||||+... ..+.+++++||+|||||||+|....+.|+|+||+|+||++||.+++|..+++
T Consensus 170 ~~g~~~~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~ 242 (536)
T PLN02792 170 DGGRKLPLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTS 242 (536)
T ss_pred hccCcCCCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeE
Confidence 34433 337899999999642 1367999999999999999999999999999999999999999999999999
Q ss_pred EEEccCceEEEEEEeCCCCceeEEEEeecccccccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCchhhhh
Q 039963 268 IMIAPGQTTNVLLTADQPPARYYMAARAYNSANVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTATATA 347 (578)
Q Consensus 268 v~l~pger~dv~v~~~~~~G~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~ 347 (578)
|.|++||||||+|++++.+|+|+|+......+ ......|||+|.++... . +..|..|.+++...+..
T Consensus 243 l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~--------~-~~~p~~p~~~~~~~~~~ 309 (536)
T PLN02792 243 LDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIA----AKVLVSSTLHYSNSKGH--------K-IIHARQPDPDDLEWSIK 309 (536)
T ss_pred EEEccCceEEEEEEcCCCCceEEEEEEeccCC----CCCceEEEEEECCCCCC--------C-CCCCCCCCcCCcccccc
Confidence 99999999999999998889999998864222 23577899999886431 0 11222333333332221
Q ss_pred h----hcccccCCCCCCCCccceEEEEEeecccc-cCCCCCCCCccCCCCCeeeEeecceeecCCCcchhhhhhccCCCC
Q 039963 348 Y----TAQIRSLHEVKVPTVIDEDLFFTVGLGLI-NCSNPNSPRCQGPNGTRFAASINNVSFEFPTGNSLMQAYFQDQPG 422 (578)
Q Consensus 348 ~----~~~l~~l~p~~~p~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~ll~~~~~~~~g 422 (578)
+ ...+....+...|+..+....+..+.... .+. ...+ + ..+.|++||.+|..|++ |+|.+.++...|
T Consensus 310 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~---~-~~~~~~iN~~s~~~p~~-p~L~a~~~~~~g 381 (536)
T PLN02792 310 QAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESS---AALV---K-RKQRYAINGVSFVPSDT-PLKLADHFKIKG 381 (536)
T ss_pred chhhhhhccCCCCCCCCCCcccccceeccceeEEeccc---cccc---C-ceeEEEECCcccCCCCC-chhhhhhhccCC
Confidence 2 11122111223333222211111111100 000 0011 2 25789999999999988 666665555567
Q ss_pred cccCC-CCCCCCccccCCCCCcccccccCCCceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCC
Q 039963 423 VFTTD-FPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPS 501 (578)
Q Consensus 423 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~ 501 (578)
.+..+ |+..+|..++. ..++.++.+++|++|||+|+|.. ...||||||||+||||++|.|.|++.
T Consensus 382 ~~~~~~~~~~p~~~~~~-----------~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~ 447 (536)
T PLN02792 382 VFKVGSIPDKPRRGGGM-----------RLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA 447 (536)
T ss_pred CcCcccCccCCcccCCC-----------ccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc
Confidence 77654 77766643221 23567899999999999999954 45899999999999999999999874
Q ss_pred CCCCCCCCCCCCcceeEEeCCCcEEEEEEEeCCceeEEEEeechhhHhccceEEEEEecCcchhcccCCCCCCCCCC
Q 039963 502 TDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDEELQAVQSPPLDLPPC 578 (578)
Q Consensus 502 ~~~~~~~~~~p~~rDTv~vpp~~~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~~~~~~~c 578 (578)
+...||+.||++||||.|+++||++|||+|||||.|+||||++.|+..||..+|.|+++.+..+++++||++++.|
T Consensus 448 -~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 448 -SRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred -cccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 4668999999999999999999999999999999999999999999999999999999999999999999999999
No 8
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=6.7e-98 Score=801.12 Aligned_cols=495 Identities=26% Similarity=0.472 Sum_probs=387.7
Q ss_pred cccceeEEEE-EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCccc
Q 039963 31 SHAEIQFHEF-IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVT 109 (578)
Q Consensus 31 a~~~~~~~~l-~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~ 109 (578)
|.|++++|+| +++...++||+.+++++|||++|||+|++++||+|+|+|+|+|+++|+|||||+++..++|+||+++ +
T Consensus 22 ~~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-t 100 (545)
T PLN02168 22 AFAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-T 100 (545)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-C
Confidence 3468999999 9999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccCCCCeEEEEEEecCCCcceeEecccccccc-cceEEEEEecCCCCCCCCCCCCCceeeeecccccCChHHHHHHHH
Q 039963 110 QCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA-TVYGAIIIYPRIGSSYPFPVPNREIPILLGEWWDKNPMDVLMQAI 188 (578)
Q Consensus 110 ~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~ 188 (578)
||||+||++|+|+|++++++||||||||...|++ ||+|+|||++++..+.|++.+++|+.++++||++.+..... ...
T Consensus 101 QcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~-~~~ 179 (545)
T PLN02168 101 NCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMR-ASL 179 (545)
T ss_pred cCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHH-hhh
Confidence 9999999999999998668999999999998886 99999999998776667777899999999999998754432 223
Q ss_pred hcCCCCCCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEE
Q 039963 189 FTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVI 268 (578)
Q Consensus 189 ~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v 268 (578)
..+.....++.+||||+.. ..+.+++++|++|||||||++....+.|+|+||+|+||++||.+++|..+++|
T Consensus 180 ~~g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l 251 (545)
T PLN02168 180 DNGHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSL 251 (545)
T ss_pred hcCCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEE
Confidence 3343344678999999963 12689999999999999999999999999999999999999999999999999
Q ss_pred EEccCceEEEEEEeCCCC-c---eeEEEEeecccccccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 039963 269 MIAPGQTTNVLLTADQPP-A---RYYMAARAYNSANVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTAT 344 (578)
Q Consensus 269 ~l~pger~dv~v~~~~~~-G---~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~ 344 (578)
.|++||||||+|++++.+ | +|+|++.....+ ......|+|+|+++... ...+.|..|...+...
T Consensus 252 ~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~~--------~~~p~p~~p~~~~~~~ 319 (545)
T PLN02168 252 DIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPLD--------PVGPLPLAPALHDYFS 319 (545)
T ss_pred EEcCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCCC--------CCCCCCCCCccccccc
Confidence 999999999999998654 4 899998863222 23577899999875431 1111232333332222
Q ss_pred hhhhhcccc-cCCC---CCCCCc--------cceEEEEEeecccccCCCCCCCCccCCCCCeeeEeecceeecCCCcchh
Q 039963 345 ATAYTAQIR-SLHE---VKVPTV--------IDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSFEFPTGNSL 412 (578)
Q Consensus 345 ~~~~~~~l~-~l~p---~~~p~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~l 412 (578)
..+...+++ .+.| ...+.. .+.++.+...+ ..+ ++ ...|++||.+|..|++|.|
T Consensus 320 ~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~----------~~~---~g-~~~~~iN~~s~~~p~~P~l 385 (545)
T PLN02168 320 SVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV----------MLS---SG-KLRYTINGVSFVYPGTPLK 385 (545)
T ss_pred ccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccc----------ccc---Cc-eEEEEECCCccCCCCCchh
Confidence 111111111 1222 112211 11111111100 001 22 5789999999999998544
Q ss_pred hhhhccCCCCcccCC-CCCCCCccccCCCCCcccccccCCCceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEE
Q 039963 413 MQAYFQDQPGVFTTD-FPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVV 491 (578)
Q Consensus 413 l~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl 491 (578)
.+.++..++.+..+ ++..+|.. ....+++++.+++|++|||+|+|.. ...||||||||+||||
T Consensus 386 -~~~~~~~~~~~~~~~~~~~p~~~------------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vv 449 (545)
T PLN02168 386 -LVDHFQLNDTIIPGMFPVYPSNK------------TPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVV 449 (545)
T ss_pred -hhhhcccccccccCCCccCCCcC------------ccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEE
Confidence 44433333333332 44444310 0112467889999999999999964 4589999999999999
Q ss_pred EeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeCCceeEEEEeechhhHhccceEEEEEecCcc------hh
Q 039963 492 GSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDE------EL 565 (578)
Q Consensus 492 ~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~------~~ 565 (578)
++|.|.|++.. ...+|+.||++|||+.||++||++|||+|||||.|+|||||++|...||.+.+.|+++.+ +.
T Consensus 450 g~g~g~~~~~~-~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~ 528 (545)
T PLN02168 450 GYGFGAWSESK-KAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPV 528 (545)
T ss_pred ECCCCCCCccc-cccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCcccccc
Confidence 99999998653 457999999999999999999999999999999999999999999999999999865544 35
Q ss_pred cccCCCCCCCCCC
Q 039963 566 QAVQSPPLDLPPC 578 (578)
Q Consensus 566 ~~~~~~~~~~~~c 578 (578)
+.+++||.+++.|
T Consensus 529 ~~~~~~P~~~~~c 541 (545)
T PLN02168 529 RDENPIPGNVIRC 541 (545)
T ss_pred ccccCCChhhccc
Confidence 6789999999999
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=3.8e-94 Score=781.24 Aligned_cols=528 Identities=30% Similarity=0.554 Sum_probs=390.2
Q ss_pred HHHHHHHHHHHHhhhcccccceeEEEE-EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCC-CceeEEe
Q 039963 14 SCLLLGVLFIFAFVASLSHAEIQFHEF-IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ-YNITLHW 91 (578)
Q Consensus 14 ~~~~~~~~~~~~~~~~~a~~~~~~~~l-~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~-~~~siH~ 91 (578)
|++|+.+.++.. +-..+.+++++|+| +++..+++||+.+++++|||++|||+||+++||+|+|+|+|+|+ ++++|||
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHw 81 (574)
T PLN02191 3 MIVWWIVTVVAV-LTHTASAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHW 81 (574)
T ss_pred EeehhHHHHHHH-HHHhhccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEC
Confidence 344554433322 23334468999999 99999999999999999999999999999999999999999997 7899999
Q ss_pred cccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEecccccccc-cceEEEEEecCCCCCCCCCCCCCceee
Q 039963 92 HGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA-TVYGAIIIYPRIGSSYPFPVPNREIPI 170 (578)
Q Consensus 92 HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l 170 (578)
||+++.+++|+||+++++||+|+||++++|+|++ .++||||||||...+.+ ||+|+|||+++.+...++ .+|+|++|
T Consensus 82 HGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l 159 (574)
T PLN02191 82 HGIRQKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNL 159 (574)
T ss_pred CCCCCCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEE
Confidence 9999999999999999999999999999999998 78999999999998886 999999999765433333 46999999
Q ss_pred eecccccCChHHHHHHHHhcC-CCCCCCceEEEcCcCCCCCCCCC--------------------CceeEEEEecCcEEE
Q 039963 171 LLGEWWDKNPMDVLMQAIFTG-AAPNVSDAFTINGQPGDLYRCSR--------------------RETVRFQVEAGETVL 229 (578)
Q Consensus 171 ~~~d~~~~~~~~~~~~~~~~g-~~~~~~~~~liNG~~~~~~~~~~--------------------~~~~~l~v~~G~~~r 229 (578)
+++||++.............. .....++.++|||+.. +.|.. .....+++++|++||
T Consensus 160 ~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yR 237 (574)
T PLN02191 160 LLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYR 237 (574)
T ss_pred eeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEE
Confidence 999999976443222211111 1124568999999864 33420 122369999999999
Q ss_pred EEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCC-ceeEEEEeecccccccCCCcce
Q 039963 230 LRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPP-ARYYMAARAYNSANVAFDNTTT 308 (578)
Q Consensus 230 lrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~-G~y~i~~~~~~~~~~~~~~~~~ 308 (578)
|||||+|+...+.|+|+||+|+||++||.+++|+.+++|.|++||||||+|++++++ ++|+|+......+. .....
T Consensus 238 lRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~---~~~~~ 314 (574)
T PLN02191 238 IRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP---NTTQA 314 (574)
T ss_pred EEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC---CCCCc
Confidence 999999999999999999999999999999999999999999999999999999876 58999987533221 22345
Q ss_pred EEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhccccc-CCCCCCCC-ccceEEEEEeecccccCCCCCCCC
Q 039963 309 TAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTATATAYTAQIRS-LHEVKVPT-VIDEDLFFTVGLGLINCSNPNSPR 386 (578)
Q Consensus 309 ~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~-l~p~~~p~-~~d~~~~~~~~~~~~~~~~~~~~~ 386 (578)
.|||+|.+...... +....|..|.+.+..........+.. ......|. ..+.++.+.... .
T Consensus 315 ~ail~Y~~~~~~~~------p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~---------- 377 (574)
T PLN02191 315 LTILNYVTAPASKL------PSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQN-L---------- 377 (574)
T ss_pred eEEEEECCCCCCCC------CCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccc-e----------
Confidence 69999988654211 11111222223322211111111111 00111222 234444332111 0
Q ss_pred ccCCCCCeeeEeecceeecCCCcchhhhhhccCCCCcccCCCCCCC-CccccCCCCCcccccccCCCceEEEeeCCCEEE
Q 039963 387 CQGPNGTRFAASINNVSFEFPTGNSLMQAYFQDQPGVFTTDFPPVP-PIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQ 465 (578)
Q Consensus 387 ~~~~~g~~~~~~iN~~~~~~p~~~~ll~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ 465 (578)
.....+|++||.+|..|+.|.|++. ..+.++.++.+.+... +..|+..+.. .+.....++.++.+++|++||
T Consensus 378 ----~~~~~~~~~n~~s~~~p~~P~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~Vd 450 (574)
T PLN02191 378 ----IDGYTKWAINNVSLVTPATPYLGSV-KYNLKLGFNRKSPPRSYRMDYDIMNPP--PFPNTTTGNGIYVFPFNVTVD 450 (574)
T ss_pred ----eCCeEEEEECcccCcCCCcchHHHH-hhccCcccccCCCcccccccccccCCC--ccccccccceeEEecCCCEEE
Confidence 1124579999999998888545443 4344455444433221 2222222211 111223466789999999999
Q ss_pred EEEEeCCCC---CCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeCCceeEEEEe
Q 039963 466 LVWQDTSIV---TVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHC 542 (578)
Q Consensus 466 ~~l~N~~~~---~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~adnpG~w~~HC 542 (578)
|+|+|.... ....||||||||+||||++|.|.|++......+|+.||++|||+.||++||++|||++||||.|+|||
T Consensus 451 ivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HC 530 (574)
T PLN02191 451 VIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHC 530 (574)
T ss_pred EEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEec
Confidence 999996421 25689999999999999999999987555568999999999999999999999999999999999999
Q ss_pred echhhHhccceEEEEEecCcchhcccCCCCCCCCCC
Q 039963 543 HLDSHLTWGLAMAFLVENGDEELQAVQSPPLDLPPC 578 (578)
Q Consensus 543 Hil~H~d~GM~~~~~V~~~~~~~~~~~~~~~~~~~c 578 (578)
||+||+..||+++|. ++. ++++.+|++++.|
T Consensus 531 Hi~~Hl~~Gm~~~~~--e~~---~~~~~~p~~~~~C 561 (574)
T PLN02191 531 HIEPHLHMGMGVVFA--EGL---NRIGKIPDEALGC 561 (574)
T ss_pred CchhhhhcCCEEEEe--cCh---hhccCCCcchhhh
Confidence 999999999999996 443 4455578889998
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.8e-93 Score=777.85 Aligned_cols=522 Identities=31% Similarity=0.561 Sum_probs=394.6
Q ss_pred HHHHHhhhcccccceeEEEE-EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCC-CCceeEEecccccCC
Q 039963 21 LFIFAFVASLSHAEIQFHEF-IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRA-QYNITLHWHGVNLKG 98 (578)
Q Consensus 21 ~~~~~~~~~~a~~~~~~~~l-~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~ 98 (578)
+++..+++..+.+++++|+| +++...++||+.+++|+|||++|||+|++++||+|+|+|+|.+ .++++|||||+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~ 89 (566)
T PLN02604 10 LLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIG 89 (566)
T ss_pred HHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCC
Confidence 34444455566789999999 9999999999999999999999999999999999999999998 589999999999999
Q ss_pred CCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEecccccccc-cceEEEEEecCCCCCCCCCCCCCceeeeeccccc
Q 039963 99 NPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA-TVYGAIIIYPRIGSSYPFPVPNREIPILLGEWWD 177 (578)
Q Consensus 99 ~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~ 177 (578)
++|+||+++++||+|.||++++|+|++ +++||||||||...+++ ||+|+|||+++..+..++ .+|+|.+|+++||++
T Consensus 90 ~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~ 167 (566)
T PLN02604 90 TPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYH 167 (566)
T ss_pred CccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeecccc
Confidence 999999999999999999999999997 79999999999988885 999999999887655555 468899999999999
Q ss_pred CChHHHHHHHHhcC-CCCCCCceEEEcCcCCCCCCCC-------------C----CceeEEEEecCcEEEEEEEEcCCCC
Q 039963 178 KNPMDVLMQAIFTG-AAPNVSDAFTINGQPGDLYRCS-------------R----RETVRFQVEAGETVLLRIINAAMNQ 239 (578)
Q Consensus 178 ~~~~~~~~~~~~~g-~~~~~~~~~liNG~~~~~~~~~-------------~----~~~~~l~v~~G~~~rlrliN~~~~~ 239 (578)
....+......... .....++..+|||+.. +.|. . ...+.+++++|++|||||||+++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~ 245 (566)
T PLN02604 168 KSTYEQALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALS 245 (566)
T ss_pred CCHHHHHHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccc
Confidence 88765444322111 1123568999999853 3442 1 1345789999999999999999999
Q ss_pred cEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCc-eeEEEEeecccccccCCCcceEEEEEeccCC
Q 039963 240 ELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPA-RYYMAARAYNSANVAFDNTTTTAILAYKSAP 318 (578)
Q Consensus 240 ~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G-~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 318 (578)
.+.|+|+||+|+|||+||.+++|++++.|.|++||||||+|++++++| +|||++.....+ .+....+|||+|.+..
T Consensus 246 ~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~---~~~~~~~aIL~Y~~~~ 322 (566)
T PLN02604 246 ALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRN---NTTPPGLAIFNYYPNH 322 (566)
T ss_pred eEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCC---CCCcceeEEEEECCCC
Confidence 999999999999999999999999999999999999999999998775 899998754332 1345779999998643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCchhhhhhhcccccCCC--CCCCCccceEEEEEeecccccCCCCCCCCccCCCCCeee
Q 039963 319 CNAKNGGSNSSAPVFPTLPGFNDTATATAYTAQIRSLHE--VKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFA 396 (578)
Q Consensus 319 ~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~p--~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 396 (578)
.... ++...+..+.+++..........+..+.+ ...+...++++.+....+. .+..+.
T Consensus 323 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------------~~~~~~ 382 (566)
T PLN02604 323 PRRS------PPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNE--------------VNGYRR 382 (566)
T ss_pred CCCC------CCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccc--------------cCCeEE
Confidence 2110 01111111222222111111111111111 1123344555554322211 112578
Q ss_pred EeecceeecCCCcchhhhhhccCCCCcccCCCCCCCCccccC---CCCCcccccccCCCceEEEeeCCCEEEEEEEeCCC
Q 039963 397 ASINNVSFEFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDY---TGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSI 473 (578)
Q Consensus 397 ~~iN~~~~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~ 473 (578)
|++|+.+|..|+.|.|+ ..+....|.++.+. +|..+.+ +............+..++.++.|++||++|+|...
T Consensus 383 w~in~~~~~~p~~p~L~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~ 458 (566)
T PLN02604 383 WSVNNVSFNLPHTPYLI-ALKENLTGAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANT 458 (566)
T ss_pred EEECcccCCCCCCchhH-hhhhcCCCcccCCC---CCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCcc
Confidence 99999999988884444 43334445554221 1111111 00000000112345678999999999999999742
Q ss_pred C---CCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeCCceeEEEEeechhhHhc
Q 039963 474 V---TVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTW 550 (578)
Q Consensus 474 ~---~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~adnpG~w~~HCHil~H~d~ 550 (578)
. ....||||||||+|+||++|.|.|++.++...+|+.+|++|||+.|+++||++|||++||||.|+|||||+||+..
T Consensus 459 ~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~ 538 (566)
T PLN02604 459 MNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFM 538 (566)
T ss_pred ccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhc
Confidence 2 2567999999999999999999998776667899999999999999999999999999999999999999999999
Q ss_pred cceEEEEEecCcchhcccCCCCCCCCCC
Q 039963 551 GLAMAFLVENGDEELQAVQSPPLDLPPC 578 (578)
Q Consensus 551 GM~~~~~V~~~~~~~~~~~~~~~~~~~c 578 (578)
||+++|.+ + .++++.+|..++.|
T Consensus 539 GM~~v~~e--~---~~~~~~~p~~~~~C 561 (566)
T PLN02604 539 GMGVVFEE--G---IERVGKLPSSIMGC 561 (566)
T ss_pred CCEEEEee--C---hhhccCCCCCcCcc
Confidence 99999973 3 35677889999999
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.6e-92 Score=768.60 Aligned_cols=509 Identities=31% Similarity=0.585 Sum_probs=384.6
Q ss_pred eeEEEE-EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCC-CceeEEecccccCCCCCCCCCCcccccc
Q 039963 35 IQFHEF-IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ-YNITLHWHGVNLKGNPWADGPEYVTQCP 112 (578)
Q Consensus 35 ~~~~~l-~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~~~~ 112 (578)
+|+|+| +++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|.+. ++++|||||+++.+++|+||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 488999 99999999999999999999999999999999999999999985 8999999999999999999999999999
Q ss_pred cCCCCeEEEEEEecCCCcceeEecccccccc-cceEEEEEecCCCCCCCCCCCCCceeeeecccccCChHHHHHHHHhcC
Q 039963 113 IQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA-TVYGAIIIYPRIGSSYPFPVPNREIPILLGEWWDKNPMDVLMQAIFTG 191 (578)
Q Consensus 113 i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~~g 191 (578)
|+||++++|+|++ .++||||||||...+++ ||+|+|||+++..+..++ .+|+|++|+++||+++...+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999998 78999999999988886 999999999886544454 46899999999999987655433222211
Q ss_pred -CCCCCCceEEEcCcCCCCCCCCC-------------------CceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeE
Q 039963 192 -AAPNVSDAFTINGQPGDLYRCSR-------------------RETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLT 251 (578)
Q Consensus 192 -~~~~~~~~~liNG~~~~~~~~~~-------------------~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~ 251 (578)
.....++.++|||+.. +.|.. .....+++++|++|||||||+++...+.|+|+||+|+
T Consensus 159 ~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 1113568899999853 23321 1234589999999999999999999999999999999
Q ss_pred EEeecCcccceeEeeEEEEccCceEEEEEEeCCCC-ceeEEEEeecccccccCCCcceEEEEEeccCCCCCCCCCCCCCC
Q 039963 252 VVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPP-ARYYMAARAYNSANVAFDNTTTTAILAYKSAPCNAKNGGSNSSA 330 (578)
Q Consensus 252 via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~-G~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~ 330 (578)
|||+||.+++|+.++.+.|++||||||+|++++.+ |+|+|+......+ .......|||+|.+......+ .
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~~~~p------~ 307 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRK---PNTPPGLTVLNYYPNSPSRLP------P 307 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCC---CCCccEEEEEEECCCCCCCCC------C
Confidence 99999999999999999999999999999999766 4899998754321 123467899999875442111 0
Q ss_pred CCCCCCCCCCCchhhhhhhcccccC-CCCCCCCccceEEEEEeecccccCCCCCCCCccCCCCCeeeEeecceeecCCCc
Q 039963 331 PVFPTLPGFNDTATATAYTAQIRSL-HEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSFEFPTG 409 (578)
Q Consensus 331 ~~~p~~p~~~~~~~~~~~~~~l~~l-~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~ 409 (578)
...+..|.+.+..........+... .....+...++++.+...... ....++|++||.+|..|..
T Consensus 308 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~n~~s~~~p~~ 373 (541)
T TIGR03388 308 TPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNK--------------INGYTKWAINNVSLTLPHT 373 (541)
T ss_pred CCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcc--------------cCceEEEEECcccCCCCCc
Confidence 1112223333221111111111111 111233455666554322111 1224679999999998888
Q ss_pred chhhhhhccCCCCcccCCCC-CCCCccccCCCCCcccccccCCCceEEEeeCCCEEEEEEEeCCCC---CCCCCCccccC
Q 039963 410 NSLMQAYFQDQPGVFTTDFP-PVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIV---TVEDHPMHLHG 485 (578)
Q Consensus 410 ~~ll~~~~~~~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~---~~~~HP~HlHG 485 (578)
|+|....++..+.++.+.+ ...+..|+...... ....+.++.++.++.|++||++|+|...+ ....|||||||
T Consensus 374 -p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHG 450 (541)
T TIGR03388 374 -PYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPP--NPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHG 450 (541)
T ss_pred -cHHHHHhhcCCccccCCCCcccccccccccCCCc--ccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecC
Confidence 4444433333333332211 01111121111100 01223467889999999999999996422 24679999999
Q ss_pred CceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeCCceeEEEEeechhhHhccceEEEEEecCcchh
Q 039963 486 HEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDEEL 565 (578)
Q Consensus 486 ~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~ 565 (578)
|+||||++|.|.|++..+...+|+.+|++|||+.|+++||++|||++||||.|+|||||+||+..||+++|.+ + .
T Consensus 451 h~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e--~---~ 525 (541)
T TIGR03388 451 HDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAE--G---V 525 (541)
T ss_pred CceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEec--c---c
Confidence 9999999999999866556689999999999999999999999999999999999999999999999999973 3 3
Q ss_pred cccCCCCCCCCCC
Q 039963 566 QAVQSPPLDLPPC 578 (578)
Q Consensus 566 ~~~~~~~~~~~~c 578 (578)
++++.+|.+++.|
T Consensus 526 ~~~~~~P~~~~~C 538 (541)
T TIGR03388 526 EKVGKLPKEALGC 538 (541)
T ss_pred cccCCCCccccCC
Confidence 5677899999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2.6e-90 Score=748.87 Aligned_cols=486 Identities=25% Similarity=0.489 Sum_probs=371.0
Q ss_pred eEEEE-EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCC-CceeEEecccccCCCCCCCCCCccccccc
Q 039963 36 QFHEF-IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ-YNITLHWHGVNLKGNPWADGPEYVTQCPI 113 (578)
Q Consensus 36 ~~~~l-~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~~~~i 113 (578)
-.|+| +++..++++|+.+.+|+|||++|||+|++++||+|+|+|+|.|+ ++++|||||+++..++|+||+++++||||
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46899 99999999999999999999999999999999999999999997 89999999999999999999999999999
Q ss_pred CCCCeEEEEEEec-CCCcceeEecccccccccceEEEEEecCCCCCCCCCCCCCceeeeecccccCChHHHHHHHHhcCC
Q 039963 114 QPGRSYTYQFTIE-GQEGTLWWHAHSRWIRATVYGAIIIYPRIGSSYPFPVPNREIPILLGEWWDKNPMDVLMQAIFTGA 192 (578)
Q Consensus 114 ~PG~~~~y~~~~~-~~~Gt~~YH~h~~~~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~~g~ 192 (578)
+||++|+|+|+++ +++||||||||...|+.||+|+|||+++...+ + .+|+|++|+++||++....+..........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~--~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPP--Y-KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccC--C-CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999973 58999999999998888999999999876433 2 468999999999999887665443332221
Q ss_pred -CCCCCceEEEcCcCCCCCC---CC---CCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCce-eEEEeecCcccceeE
Q 039963 193 -APNVSDAFTINGQPGDLYR---CS---RRETVRFQVEAGETVLLRIINAAMNQELFFGVANHN-LTVVGVDTSYTKAFS 264 (578)
Q Consensus 193 -~~~~~~~~liNG~~~~~~~---~~---~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~-~~via~DG~~~~p~~ 264 (578)
....++.++|||+...... ++ ....+.+++++||+|||||||+|+...+.|+|+||+ |+|||+||.+++|+.
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred ccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceE
Confidence 1234689999999653310 00 113578999999999999999999999999999999 999999999999999
Q ss_pred eeEEEEccCceEEEEEEeCCC-------CceeEEEEeecccccccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCC
Q 039963 265 TSVIMIAPGQTTNVLLTADQP-------PARYYMAARAYNSANVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLP 337 (578)
Q Consensus 265 ~d~v~l~pger~dv~v~~~~~-------~G~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p 337 (578)
++++.|++||||||+|++++. +|+|||+......+ +.....|||+|.+..... .+..|..+
T Consensus 246 v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~~~--------~~~~p~~~ 313 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDKASK--------LPSVPETP 313 (538)
T ss_pred eCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCCCCC--------CCCCCCCC
Confidence 999999999999999999975 48999998754321 234678999998754311 11111111
Q ss_pred CCCCc-hhhhhhhcccccCCCC-----CCCCccceEEEEEeecccccCCCCCCCCccCCCCCeeeEeecceeecC--CCc
Q 039963 338 GFNDT-ATATAYTAQIRSLHEV-----KVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSFEF--PTG 409 (578)
Q Consensus 338 ~~~~~-~~~~~~~~~l~~l~p~-----~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~--p~~ 409 (578)
..... .........+.++.+. ..+..+++++.+.+++... .....+.|++||.+|.. |+.
T Consensus 314 ~~~~~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~------------~~~g~~~~~~N~~s~~~~~~~~ 381 (538)
T TIGR03390 314 PLPLPNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVD------------PLNGRVAWLQNGLSWTESVRQT 381 (538)
T ss_pred CCCccCcchhhhheeeEecCccccCCCCCCCcCceEEEEEcccccc------------ccCCeEEEEECCcccCCCCCCC
Confidence 11110 1111112234444321 2234567777666654321 01235789999999985 667
Q ss_pred chhhhhhccCCCCcccCCCCCCCCccccCCCCCcccccccCCCceEEEeeCCCEEEEEEEeCCCC-----CCCCCCcccc
Q 039963 410 NSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIV-----TVEDHPMHLH 484 (578)
Q Consensus 410 ~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~-----~~~~HP~HlH 484 (578)
|.|+.. +.+. . +..++ |+.. ... .....+++++.++.|++|||+|+|.... ....||||||
T Consensus 382 P~L~~~-~~~~---~----~~~~~--~~~~--~~~--~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlH 447 (538)
T TIGR03390 382 PYLVDI-YENG---L----PATPN--YTAA--LAN--YGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAH 447 (538)
T ss_pred chHHHH-hcCC---C----CcCCC--cccc--ccc--CCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeec
Confidence 444443 3221 0 01111 1100 000 0112345678999999999999996411 2578999999
Q ss_pred CCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeC----------CCcEEEEEEEeCCceeEEEEeechhhHhccceE
Q 039963 485 GHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMP----------PGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAM 554 (578)
Q Consensus 485 G~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp----------p~~~~~irf~adnpG~w~~HCHil~H~d~GM~~ 554 (578)
||+|+||++|.|.|++......+++.||++|||+.|| +++|++|||++||||.|+|||||+||+.+||++
T Consensus 448 Gh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~ 527 (538)
T TIGR03390 448 GRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQT 527 (538)
T ss_pred CCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceE
Confidence 9999999999999987655557888999999999996 889999999999999999999999999999999
Q ss_pred EEEEecCc
Q 039963 555 AFLVENGD 562 (578)
Q Consensus 555 ~~~V~~~~ 562 (578)
+|.|.+.+
T Consensus 528 ~~~~~~~~ 535 (538)
T TIGR03390 528 VWVFGDAE 535 (538)
T ss_pred EEEeCChH
Confidence 99987643
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=9.2e-76 Score=634.06 Aligned_cols=422 Identities=27% Similarity=0.441 Sum_probs=315.9
Q ss_pred eEEEE-EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccC
Q 039963 36 QFHEF-IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQ 114 (578)
Q Consensus 36 ~~~~l-~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~ 114 (578)
++|+| +++..++++|+.+.+|+|||++|||+|++++||+|+|+|+|+++++++|||||+++... +||+|+++||+|.
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCcccccccC
Confidence 78999 99999999999999999999999999999999999999999999999999999998654 9999999999999
Q ss_pred CCCeEEEEEEecCCCcceeEecccccccc-cceEEEEEecCCCCCCCCCCCCCceeeeecccccCChHHHHHHHHh----
Q 039963 115 PGRSYTYQFTIEGQEGTLWWHAHSRWIRA-TVYGAIIIYPRIGSSYPFPVPNREIPILLGEWWDKNPMDVLMQAIF---- 189 (578)
Q Consensus 115 PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~---- 189 (578)
||++++|+|++ .++||||||||...+.. ||+|+|||++++..+. .+|+|++|+++||++.+..+++.....
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999998 78999999999987775 9999999998754332 468999999999998766555432210
Q ss_pred -----------------cCCC---------------C-------CCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEEE
Q 039963 190 -----------------TGAA---------------P-------NVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLL 230 (578)
Q Consensus 190 -----------------~g~~---------------~-------~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rl 230 (578)
.|.. + .....++|||+.. ...+.+.+++|++|||
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-------~~~~~~~v~~G~rvRL 272 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-------AGNWTGLFRPGEKVRL 272 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-------CCCceEEECCCCEEEE
Confidence 0100 0 0012378999863 2335689999999999
Q ss_pred EEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEeecccccccCCCcceEE
Q 039963 231 RIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARAYNSANVAFDNTTTTA 310 (578)
Q Consensus 231 rliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~~~~~~~~~~~~~~a 310 (578)
||||+|+.+.+.|+|+||+|+||++||.+++|+.++.+.|++||||||+|+++ ..|.|.|.+.... +.....+
T Consensus 273 R~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~------~~~~~~~ 345 (587)
T TIGR01480 273 RFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSD------RTGYARG 345 (587)
T ss_pred EEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecC------CCceEEE
Confidence 99999999999999999999999999999999999999999999999999987 4589999987532 2346778
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCCCCCCCCC----------------------chhh----------h------------
Q 039963 311 ILAYKSAPCNAKNGGSNSSAPVFPTLPGFND----------------------TATA----------T------------ 346 (578)
Q Consensus 311 il~y~~~~~~~~~~~~~~~~~~~p~~p~~~~----------------------~~~~----------~------------ 346 (578)
+|++.+... .+.+...+.+ ......... .... .
T Consensus 346 ~l~~~~~~~--~~~p~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (587)
T TIGR01480 346 TLAVRLGLT--APVPALDPRP-LLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASE 422 (587)
T ss_pred EEecCCCCC--CCCCCCCCcc-ccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccc
Confidence 888765421 1110000000 000000000 0000 0
Q ss_pred -------------------------------hhhcccccCCCCCCCCccceEEEEEeecccccCCCCCCCCccCCCCCee
Q 039963 347 -------------------------------AYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRF 395 (578)
Q Consensus 347 -------------------------------~~~~~l~~l~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 395 (578)
....+|+.+.+...+...++++.+.+. .+...+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~----------------g~m~~~ 486 (587)
T TIGR01480 423 PLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLT----------------GNMERF 486 (587)
T ss_pred cCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEc----------------CCCcee
Confidence 000000000000000112222222211 012356
Q ss_pred eEeecceeecCCCcchhhhhhccCCCCcccCCCCCCCCccccCCCCCcccccccCCCceEEEeeCCCEEEEEEEeCCCCC
Q 039963 396 AASINNVSFEFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVT 475 (578)
Q Consensus 396 ~~~iN~~~~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~ 475 (578)
.|++||+.|.. ...+.++.|++|+|+|.|.+
T Consensus 487 ~wtiNG~~~~~----------------------------------------------~~pl~v~~Gervri~l~N~t--- 517 (587)
T TIGR01480 487 AWSFDGEAFGL----------------------------------------------KTPLRFNYGERLRVVLVNDT--- 517 (587)
T ss_pred EEEECCccCCC----------------------------------------------CCceEecCCCEEEEEEECCC---
Confidence 68888866531 12356899999999999966
Q ss_pred CCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeCCceeEEEEeechhhHhccceEE
Q 039963 476 VEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMA 555 (578)
Q Consensus 476 ~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~adnpG~w~~HCHil~H~d~GM~~~ 555 (578)
.+.||||||||.|+|+..+ |. .++++||+.|+|++++.++|+++|||.|+||||++.|++.|||+.
T Consensus 518 ~~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~ 583 (587)
T TIGR01480 518 MMAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFRE 583 (587)
T ss_pred CCCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEE
Confidence 6799999999999998653 22 135789999999999999999999999999999999999999999
Q ss_pred EEEe
Q 039963 556 FLVE 559 (578)
Q Consensus 556 ~~V~ 559 (578)
|+|.
T Consensus 584 ~~v~ 587 (587)
T TIGR01480 584 VTVR 587 (587)
T ss_pred EEeC
Confidence 9873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1.4e-72 Score=605.31 Aligned_cols=426 Identities=20% Similarity=0.287 Sum_probs=296.1
Q ss_pred eEEEE-EEEeeecCCc-eeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCccccccc
Q 039963 36 QFHEF-IEAKPVKRLC-RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPI 113 (578)
Q Consensus 36 ~~~~l-~~~~~~~~~g-~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i 113 (578)
..|+| +++...+.+| ....+|+|||++|||+|++++||+|+|+|+|.|+++|+|||||+++.+. +||++ ||+|
T Consensus 46 ~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~I 120 (523)
T PRK10965 46 GRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGII 120 (523)
T ss_pred ccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCCC
Confidence 46899 9999998875 4557999999999999999999999999999999999999999999876 99986 8999
Q ss_pred CCCCeEEEEEEecCCCcceeEeccccccc-----ccceEEEEEecCCCCCCCCCC--CCCceeeeecccccCChHHHHHH
Q 039963 114 QPGRSYTYQFTIEGQEGTLWWHAHSRWIR-----ATVYGAIIIYPRIGSSYPFPV--PNREIPILLGEWWDKNPMDVLMQ 186 (578)
Q Consensus 114 ~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~-----~Gl~G~liV~~~~~~~~~~~~--~d~e~~l~~~d~~~~~~~~~~~~ 186 (578)
.||++++|+|++++++||||||+|.++.. +||+|+|||+++++...+++. ..+|++|+++||+++...+....
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 99999999999865689999999986533 399999999998765444433 34689999999988654432111
Q ss_pred HH-hcCCCCCCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEE-eCceeEEEeecCccc-cee
Q 039963 187 AI-FTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGV-ANHNLTVVGVDTSYT-KAF 263 (578)
Q Consensus 187 ~~-~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l-~gh~~~via~DG~~~-~p~ 263 (578)
.. ........++.++|||+.+ |.+.++ +++|||||||+|+.+.+.|++ +||+|+|||.||.++ +|.
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~ 269 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPV 269 (523)
T ss_pred ccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCcc
Confidence 11 0111234568999999987 556664 679999999999999999998 799999999999987 899
Q ss_pred EeeEEEEccCceEEEEEEeCCCCceeEEEEeeccccc-ccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 039963 264 STSVIMIAPGQTTNVLLTADQPPARYYMAARAYNSAN-VAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDT 342 (578)
Q Consensus 264 ~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~~~~~-~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~ 342 (578)
.++.+.|+|||||||+|++++ .+.|.+......... ..........++++...... ....+|.
T Consensus 270 ~v~~l~lapGeR~dvlv~~~~-~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~P~------- 333 (523)
T PRK10965 270 KVSELPILMGERFEVLVDTSD-GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLIS--------ASGTLPD------- 333 (523)
T ss_pred EeCeEEECccceEEEEEEcCC-CceEEEEEecccCcccccccCCCceeEEEEeccCcC--------CCCcCCh-------
Confidence 999999999999999999984 578988876432210 00001112344555432210 0001111
Q ss_pred hhhhhhhcccccCCCCCCC-CccceEEEEEeecccc---------cCCC-CCCC--------Cc-c-----CCC-----C
Q 039963 343 ATATAYTAQIRSLHEVKVP-TVIDEDLFFTVGLGLI---------NCSN-PNSP--------RC-Q-----GPN-----G 392 (578)
Q Consensus 343 ~~~~~~~~~l~~l~p~~~p-~~~d~~~~~~~~~~~~---------~~~~-~~~~--------~~-~-----~~~-----g 392 (578)
.++.+.+...+ ....+++.+.+..... .... .... .+ . ... +
T Consensus 334 --------~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (523)
T PRK10965 334 --------SLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAG 405 (523)
T ss_pred --------hhccCCCCCcccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 01111110000 0011223222210000 0000 0000 00 0 000 0
Q ss_pred Cee----eEeecceeecCCCcchhhhhhccCCCCcccCCCCCCCCccccCCCCCcccccccCCCceEEEeeCCCEEEEEE
Q 039963 393 TRF----AASINNVSFEFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVW 468 (578)
Q Consensus 393 ~~~----~~~iN~~~~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l 468 (578)
..+ .|+|||++|... ...+.+++|++|+|.|
T Consensus 406 ~~~~~~~~~~ING~~~~~~---------------------------------------------~~~~~~~~G~~e~w~i 440 (523)
T PRK10965 406 PAFDFHHANKINGKAFDMN---------------------------------------------KPMFAAKKGQYERWVI 440 (523)
T ss_pred ccccccccccCCCeECCCC---------------------------------------------CcceecCCCCEEEEEE
Confidence 001 146777766421 1235789999999999
Q ss_pred EeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe----CCceeEEEEeec
Q 039963 469 QDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA----NNPGIWFMHCHL 544 (578)
Q Consensus 469 ~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a----dnpG~w~~HCHi 544 (578)
.|.+. .+.|||||||++||||+++... ....++.|||||.|++ +.+.|++++ +++|.|||||||
T Consensus 441 ~N~~~--~~~Hp~HlHg~~F~Vl~~~g~~---------~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHi 508 (523)
T PRK10965 441 SGVGD--MMLHPFHIHGTQFRILSENGKP---------PAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHL 508 (523)
T ss_pred EeCCC--CCccCeEEeCcEEEEEEecCCC---------CCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCc
Confidence 99751 3579999999999999986321 1123467999999988 666655554 467899999999
Q ss_pred hhhHhccceEEEEE
Q 039963 545 DSHLTWGLAMAFLV 558 (578)
Q Consensus 545 l~H~d~GM~~~~~V 558 (578)
|+|||.|||+.|+|
T Consensus 509 L~Hed~GMM~~~~V 522 (523)
T PRK10965 509 LEHEDTGMMLGFTV 522 (523)
T ss_pred hhhhccCccceeEe
Confidence 99999999999998
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2.7e-71 Score=590.63 Aligned_cols=401 Identities=17% Similarity=0.223 Sum_probs=290.0
Q ss_pred EEEE-EEEeeecCC-ceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccC
Q 039963 37 FHEF-IEAKPVKRL-CRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQ 114 (578)
Q Consensus 37 ~~~l-~~~~~~~~~-g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~ 114 (578)
.++| ++...++.+ |..+.+|+|||++|||+||+++||+|+|+|+|.|+++|+|||||+++.+. .+||++ ++|.
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 3788 888888887 57889999999999999999999999999999999999999999998765 466654 6799
Q ss_pred CCCeEEEEEEecCCCcceeEeccccccc-----ccceEEEEEecCCCCCCCCCC--CCCceeeeecccccCChHHHHHHH
Q 039963 115 PGRSYTYQFTIEGQEGTLWWHAHSRWIR-----ATVYGAIIIYPRIGSSYPFPV--PNREIPILLGEWWDKNPMDVLMQA 187 (578)
Q Consensus 115 PG~~~~y~~~~~~~~Gt~~YH~h~~~~~-----~Gl~G~liV~~~~~~~~~~~~--~d~e~~l~~~d~~~~~~~~~~~~~ 187 (578)
||++++|+|.+++++||||||+|.++.+ +||+|+|||+++.+...+++. ..+|++|+++||..+.......
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~-- 199 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY-- 199 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccc--
Confidence 9999999998866799999999988744 399999999988764444432 2358999999998765432111
Q ss_pred HhcCCCCCCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEE-eCceeEEEeecCccc-ceeEe
Q 039963 188 IFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGV-ANHNLTVVGVDTSYT-KAFST 265 (578)
Q Consensus 188 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l-~gh~~~via~DG~~~-~p~~~ 265 (578)
.........++.++|||+.+ |.+++++| +|||||||+|+.+.+.|+| +||+|+||+.||.++ +|..+
T Consensus 200 ~~~~~~g~~gd~~lvNG~~~----------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 200 NEPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred cccccCCccCCeeEECCccC----------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 01111234568999999987 67899875 7999999999999999999 899999999998776 89999
Q ss_pred eEEEEccCceEEEEEEeCCCCceeEEEEeecccccc----cCCCc---ceEEEEEeccCCCCCCCCCCCCCCCCCCCCCC
Q 039963 266 SVIMIAPGQTTNVLLTADQPPARYYMAARAYNSANV----AFDNT---TTTAILAYKSAPCNAKNGGSNSSAPVFPTLPG 338 (578)
Q Consensus 266 d~v~l~pger~dv~v~~~~~~G~y~i~~~~~~~~~~----~~~~~---~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~ 338 (578)
+++.|+|||||||+|++++ .+.+.+++........ .+... ....+++...... ........|.
T Consensus 269 ~~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~p~ 338 (471)
T PRK10883 269 KQLSLAPGERREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL---------LPLVTDNLPM 338 (471)
T ss_pred CeEEECCCCeEEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEcccc---------ccCCCCcCCh
Confidence 9999999999999999984 4566666532110000 00000 0112222221110 0000000010
Q ss_pred CCCchhhhhhhcccccCCCCCCCCccceEEEEEeecccccCCCCCCCCccCCCCCeeeEeecceeecCCCcchhhhhhcc
Q 039963 339 FNDTATATAYTAQIRSLHEVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSFEFPTGNSLMQAYFQ 418 (578)
Q Consensus 339 ~~~~~~~~~~~~~l~~l~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~ll~~~~~ 418 (578)
.+.. +...+....+++.+.++. + .|.|||++|.+...
T Consensus 339 ------------~l~~--~~~~~~~~~~~~~~~l~~-----------------~---~~~INg~~~~~~~~--------- 375 (471)
T PRK10883 339 ------------RLLP--DEIMEGSPIRSREISLGD-----------------D---LPGINGALWDMNRI--------- 375 (471)
T ss_pred ------------hhcC--CCCCCCCCcceEEEEecC-----------------C---cCccCCcccCCCcc---------
Confidence 0111 000111223333332211 1 24689988763211
Q ss_pred CCCCcccCCCCCCCCccccCCCCCcccccccCCCceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCC
Q 039963 419 DQPGVFTTDFPPVPPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNF 498 (578)
Q Consensus 419 ~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~ 498 (578)
.+.+++|++|+|.+.|. +.|||||||+.|||++++....
T Consensus 376 ------------------------------------~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G~~~ 414 (471)
T PRK10883 376 ------------------------------------DVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNGAMP 414 (471)
T ss_pred ------------------------------------eeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecCCCC
Confidence 25679999999999883 5899999999999999964211
Q ss_pred CCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeCCce----eEEEEeechhhHhccceEEEEEec
Q 039963 499 NPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNPG----IWFMHCHLDSHLTWGLAMAFLVEN 560 (578)
Q Consensus 499 ~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~adnpG----~w~~HCHil~H~d~GM~~~~~V~~ 560 (578)
. ..+..|||||.|+ +.+.|+++++++| .||||||||+|||.|||+.|+|.+
T Consensus 415 ~---------~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 415 F---------PEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred C---------ccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 1 1234699999996 4699999999887 899999999999999999999965
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.2e-57 Score=484.21 Aligned_cols=402 Identities=26% Similarity=0.369 Sum_probs=287.6
Q ss_pred CceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCC
Q 039963 49 LCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQ 128 (578)
Q Consensus 49 ~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~ 128 (578)
.+.....|+|||++|||+||+++||+|+|+++|.+.+.+++||||+..+. .+||++..+++.+.||++++|.|+. ..
T Consensus 48 ~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~--~~dG~~~~~~~~~~~~~~~~y~f~~-~~ 124 (451)
T COG2132 48 PGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPG--EMDGVPPLTQIPPGPGETPTYTFTQ-DV 124 (451)
T ss_pred cCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCc--cccCCCcccccCCCCCCcEEEeecC-CC
Confidence 46777899999999999999999999999999999888999999988774 4999999999999999999999987 66
Q ss_pred CcceeEecccccccc-cceEEEEEecCCCCCCCCCCCCCceeeeecccccCChHHHHHHHHhcCCCCCCCceEEEcCcCC
Q 039963 129 EGTLWWHAHSRWIRA-TVYGAIIIYPRIGSSYPFPVPNREIPILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPG 207 (578)
Q Consensus 129 ~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~ 207 (578)
+||||||+|.++|.. ||+|++||++....+. ..|++..+++.+|+.......... .........+..+|||+.+
T Consensus 125 ~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~vnG~~~ 199 (451)
T COG2132 125 PGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMGGFPGDTLLVNGAIL 199 (451)
T ss_pred CcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--CccccCCCCCeEEECCCcc
Confidence 779999999999875 9999999999876543 557888888888877655443322 1222344568999999765
Q ss_pred CCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCc
Q 039963 208 DLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPA 287 (578)
Q Consensus 208 ~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G 287 (578)
+ +...++++|||||+|++..+.+.+++.+++++||+.||.++++..+|.+.|+||||+||++++++ .+
T Consensus 200 ----------p-~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~-~~ 267 (451)
T COG2132 200 ----------P-FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND-GG 267 (451)
T ss_pred ----------c-eeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC-CC
Confidence 3 44555667999999999888888888999999999999999889999999999999999999994 67
Q ss_pred eeEEEEeecccccccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhcccccCCCCCCCCccceE
Q 039963 288 RYYMAARAYNSANVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTATATAYTAQIRSLHEVKVPTVIDED 367 (578)
Q Consensus 288 ~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~p~~~p~~~d~~ 367 (578)
.+.+.+.. .... ....+......... ... .........+..+..... ....++....... ...+..
T Consensus 268 ~~~l~~~~-~~~~-----~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~-~~~~~~ 333 (451)
T COG2132 268 AVTLTALG-EDMP-----DTLKGFRAPNPILT-PSY----PVLNGRVGAPTGDMADHA--PVGLLVTILVEPG-PNRDTD 333 (451)
T ss_pred eEEEEecc-ccCC-----ceeeeeeccccccc-ccc----ccccccccCCCcchhhcc--ccccchhhcCCCc-cccccc
Confidence 88888875 1111 01111111110000 000 000000000000000000 0000000000000 000000
Q ss_pred EEEEeecccccCCCCCCCCccCCCCCeeeEeecceeecCCCcchhhhhhccCCCCcccCCCCCCCCccccCCCCCccccc
Q 039963 368 LFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNVSFEFPTGNSLMQAYFQDQPGVFTTDFPPVPPIKFDYTGNVSRVLW 447 (578)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~ 447 (578)
..+.. ....+.|.+|+..|..
T Consensus 334 ~~l~~------------------~~~~~~~~~n~~~~~~----------------------------------------- 354 (451)
T COG2132 334 FHLIG------------------GIGGYVWAINGKAFDD----------------------------------------- 354 (451)
T ss_pred chhhc------------------ccccccccccCccCCC-----------------------------------------
Confidence 00000 0112345566554431
Q ss_pred ccCCCceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEE
Q 039963 448 QPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVA 527 (578)
Q Consensus 448 ~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~ 527 (578)
....+.++.|++++|++.|.. .+.|||||||+.|+|++.+ . ......+.||||+.+.+++.++
T Consensus 355 ----~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~-~---------~~~~~~~~~kDTv~v~~~~~~~ 417 (451)
T COG2132 355 ----NRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD-A---------PAPGAAPGWKDTVLVAPGERLL 417 (451)
T ss_pred ----CcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC-C---------CcccccCccceEEEeCCCeEEE
Confidence 123567899999999999965 5899999999999999986 1 1122357899999999999999
Q ss_pred EEEEeCCceeEEEEeechhhHhccceEEEEEec
Q 039963 528 IRFVANNPGIWFMHCHLDSHLTWGLAMAFLVEN 560 (578)
Q Consensus 528 irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~ 560 (578)
|+|++++||.|+||||+++|++.|||..+.|..
T Consensus 418 v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 418 VRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred EEEeCCCCCceEEeccchhHhhcCCeeEEEecC
Confidence 999999999999999999999999999999753
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=1.4e-46 Score=380.46 Aligned_cols=264 Identities=21% Similarity=0.234 Sum_probs=215.9
Q ss_pred cccceeEEEE-EEEeeec-CCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCC--CceeEEecccccCCCCCCCCCC
Q 039963 31 SHAEIQFHEF-IEAKPVK-RLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ--YNITLHWHGVNLKGNPWADGPE 106 (578)
Q Consensus 31 a~~~~~~~~l-~~~~~~~-~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~--~~~siH~HG~~~~~~~~~DG~~ 106 (578)
+...+++|+| +++..++ .+|+.+.+|+|||++|||+|++++||+|+|+|+|.++ .++++||||.. ++||++
T Consensus 23 ~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~ 97 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGA 97 (311)
T ss_pred CCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCC
Confidence 4567889999 9999887 4699999999999999999999999999999999985 58999999963 378887
Q ss_pred cccccccCCCCeEEEEEEecCCCcceeEeccccc----ccc-cceEEEEEecCCCCCCCCCCCCCceeeeecccccCChH
Q 039963 107 YVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRW----IRA-TVYGAIIIYPRIGSSYPFPVPNREIPILLGEWWDKNPM 181 (578)
Q Consensus 107 ~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~----~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~ 181 (578)
..++ |.||++++|+|++ +++||||||||.++ +.+ ||+|+|||++++.. +..|+|++|+++||++....
T Consensus 98 ~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~----~~~d~e~~l~l~d~~~~~~~ 170 (311)
T TIGR02376 98 ALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL----PEYDKEYYIGESDLYTPKDE 170 (311)
T ss_pred ccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC----cCcceeEEEeeeeEeccccc
Confidence 7776 9999999999987 78999999999754 443 99999999987532 25689999999999886533
Q ss_pred HHHHHH--HhcCCCCCCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcc
Q 039963 182 DVLMQA--IFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSY 259 (578)
Q Consensus 182 ~~~~~~--~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~ 259 (578)
...... .........+++++|||+.+++ .+.+.+++|+++||||+|++..+.+.||++|+.+++|+.||.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~ 243 (311)
T TIGR02376 171 GEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKF 243 (311)
T ss_pred cccccccchHHHHhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcc
Confidence 211000 0000012346899999997532 1356899999999999999988989999999999999999999
Q ss_pred ccee--EeeEEEEccCceEEEEEEeCCCCceeEEEEeecccccccCCCcceEEEEEeccCC
Q 039963 260 TKAF--STSVIMIAPGQTTNVLLTADQPPARYYMAARAYNSANVAFDNTTTTAILAYKSAP 318 (578)
Q Consensus 260 ~~p~--~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 318 (578)
+.+. .++++.|+||||+||+|+++ .||.|++++|.+... .+.+..++++|++..
T Consensus 244 ~~~~~~~~~~~~i~PG~R~dv~v~~~-~pG~y~~~~~~~~~~----~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 244 ANPPNRDVETWFIPGGSAAAALYTFE-QPGVYAYVDHNLIEA----FEKGAAAQVKVEGAW 299 (311)
T ss_pred cCCCCCCcceEEECCCceEEEEEEeC-CCeEEEEECcHHHHH----HhCCCEEEEEECCCC
Confidence 9653 48999999999999999999 489999999976543 134688999998754
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=1.9e-34 Score=249.43 Aligned_cols=115 Identities=45% Similarity=0.825 Sum_probs=107.2
Q ss_pred EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEE
Q 039963 41 IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYT 120 (578)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~ 120 (578)
+++..+.++|..+++|+|||++|||+||+++||+|+|+|+|+++++++|||||+.+...+|+||+++++||+|.||++++
T Consensus 2 v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~ 81 (117)
T PF07732_consen 2 VTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFT 81 (117)
T ss_dssp EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEE
T ss_pred eeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeeccee
Confidence 57888899987799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCcceeEeccccccc-ccceEEEEEecCC
Q 039963 121 YQFTIEGQEGTLWWHAHSRWIR-ATVYGAIIIYPRI 155 (578)
Q Consensus 121 y~~~~~~~~Gt~~YH~h~~~~~-~Gl~G~liV~~~~ 155 (578)
|+|++++++||||||||.+++. +||+|+|||++++
T Consensus 82 Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 82 YEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 9999965699999999999865 5999999999863
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=5.8e-29 Score=224.02 Aligned_cols=107 Identities=44% Similarity=0.857 Sum_probs=95.7
Q ss_pred CCCceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEE
Q 039963 450 LKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIR 529 (578)
Q Consensus 450 ~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~ir 529 (578)
..++.++.++.|++|||+|.|.+ ...|||||||++|+|++.+.+.++.. ....+++.+|.||||+.|+++++++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 35678999999999999999965 56999999999999999987766443 456788889999999999999999999
Q ss_pred EEeCCceeEEEEeechhhHhccceEEEEEec
Q 039963 530 FVANNPGIWFMHCHLDSHLTWGLAMAFLVEN 560 (578)
Q Consensus 530 f~adnpG~w~~HCHil~H~d~GM~~~~~V~~ 560 (578)
|+++|||.|+|||||++|++.|||+.|.|.+
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999864
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.93 E-value=5.6e-26 Score=209.07 Aligned_cols=149 Identities=32% Similarity=0.574 Sum_probs=122.9
Q ss_pred CceeeeecccccCChHHHHHHHHhcCC----CCCCCceEEEcCcCCCCCCCC-----CCceeEEEEecCcEEEEEEEEcC
Q 039963 166 REIPILLGEWWDKNPMDVLMQAIFTGA----APNVSDAFTINGQPGDLYRCS-----RRETVRFQVEAGETVLLRIINAA 236 (578)
Q Consensus 166 ~e~~l~~~d~~~~~~~~~~~~~~~~g~----~~~~~~~~liNG~~~~~~~~~-----~~~~~~l~v~~G~~~rlrliN~~ 236 (578)
+|++|+++|||++.......+....+. .+..+++++|||+.. +.|+ ....+.+.+++|++|||||||++
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 478999999999887777665444322 266889999999976 3444 24578999999999999999999
Q ss_pred CCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEeecccccccCCCcceEEEEEecc
Q 039963 237 MNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARAYNSANVAFDNTTTTAILAYKS 316 (578)
Q Consensus 237 ~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~~~~~~~~~~~~~~ail~y~~ 316 (578)
+...+.|+++||+|+|||+||.+++|..++++.|++||||||+|++++++|+|+|++................|+|+|++
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999768999999974333333345678999999986
No 21
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.77 E-value=1.4e-16 Score=161.70 Aligned_cols=242 Identities=18% Similarity=0.175 Sum_probs=155.5
Q ss_pred ceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCC-CCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceE
Q 039963 198 DAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAM-NQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTT 276 (578)
Q Consensus 198 ~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~-~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~ 276 (578)
..+++||+. ..|.+++++|+++++++.|... ...+.+|+|++. +.||... ...|.||+++
T Consensus 48 ~~~~~nG~~---------pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ 108 (311)
T TIGR02376 48 QAMTFDGSV---------PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETA 108 (311)
T ss_pred EEEEECCcc---------cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeE
Confidence 588999984 2388999999999999999863 257889999874 4566421 2338999999
Q ss_pred EEEEEeCCCCceeEEEEeecccccccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhcccccCC
Q 039963 277 NVLLTADQPPARYYMAARAYNSANVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTATATAYTAQIRSLH 356 (578)
Q Consensus 277 dv~v~~~~~~G~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~ 356 (578)
.+.++++ .+|.||+|||..... ......+..+.|.++.... .+
T Consensus 109 ty~F~~~-~~Gty~YH~H~~~~~-~~q~~~Gl~G~liV~~~~~----------------~~------------------- 151 (311)
T TIGR02376 109 TLRFKAT-RPGAFVYHCAPPGMV-PWHVVSGMNGAIMVLPREG----------------LP------------------- 151 (311)
T ss_pred EEEEEcC-CCEEEEEEcCCCCch-hHHhhcCcceEEEeeccCC----------------Cc-------------------
Confidence 9999998 689999999953210 1111235556666654221 00
Q ss_pred CCCCCCccceEEEEEee-cccccCCC---CCCCCcc-CCCCCeeeEeecceeecCCCcchhhhhhccCCCCcccCCCCCC
Q 039963 357 EVKVPTVIDEDLFFTVG-LGLINCSN---PNSPRCQ-GPNGTRFAASINNVSFEFPTGNSLMQAYFQDQPGVFTTDFPPV 431 (578)
Q Consensus 357 p~~~p~~~d~~~~~~~~-~~~~~~~~---~~~~~~~-~~~g~~~~~~iN~~~~~~p~~~~ll~~~~~~~~g~~~~~~~~~ 431 (578)
+.|+.+.+.++ +....... ....... ...+..-...+||+....
T Consensus 152 ------~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~------------------------- 200 (311)
T TIGR02376 152 ------EYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL------------------------- 200 (311)
T ss_pred ------CcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCCC-------------------------
Confidence 01111111110 00000000 0000000 000000123455542210
Q ss_pred CCccccCCCCCcccccccCCCceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCC
Q 039963 432 PPIKFDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLID 511 (578)
Q Consensus 432 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~ 511 (578)
.+.+.++.|++++|+|.|.+ ....+.||++|++|.++... |.+ ..
T Consensus 201 ---------------------~~~~~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~D-G~~-----------~~ 245 (311)
T TIGR02376 201 ---------------------TGDNALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVT-GKF-----------AN 245 (311)
T ss_pred ---------------------CCCcccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEEC-Ccc-----------cC
Confidence 01236788999999999976 34678999999999999984 332 12
Q ss_pred CC--cceeEEeCCCcEEEEEEEeCCceeEEEEeechhhH-hccceEEEEEecC
Q 039963 512 PP--RRNTIGMPPGGWVAIRFVANNPGIWFMHCHLDSHL-TWGLAMAFLVENG 561 (578)
Q Consensus 512 p~--~rDTv~vpp~~~~~irf~adnpG~w~~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
+. ..||+.|.||+.+.|.++++.||.|++|||...|. ..|++++++|+..
T Consensus 246 ~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g~ 298 (311)
T TIGR02376 246 PPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEGA 298 (311)
T ss_pred CCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECCC
Confidence 22 26999999999999999999999999999999998 7799999998643
No 22
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.70 E-value=9.8e-17 Score=144.10 Aligned_cols=101 Identities=20% Similarity=0.352 Sum_probs=79.6
Q ss_pred ceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCC---CceeEEecccccCCCCCCCCCCcccccccCCC----Ce--EE
Q 039963 50 CRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQ---YNITLHWHGVNLKGNPWADGPEYVTQCPIQPG----RS--YT 120 (578)
Q Consensus 50 g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~---~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG----~~--~~ 120 (578)
+....-+.++| .++|+|++++||+|+|+|+|.+. ....||+||......+.+||++..+++++.|+ +. .+
T Consensus 38 ~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~ 116 (148)
T TIGR03095 38 GPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTD 116 (148)
T ss_pred CCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeE
Confidence 45556778888 56899999999999999999964 45677777776554445899999999998884 11 24
Q ss_pred EEEEecCCCcceeEecccccccc-cceEEEEEe
Q 039963 121 YQFTIEGQEGTLWWHAHSRWIRA-TVYGAIIIY 152 (578)
Q Consensus 121 y~~~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~ 152 (578)
++|+. .++||||||||..++++ ||+|.|||+
T Consensus 117 ~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 117 FTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 45544 48999999999998886 999999995
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.68 E-value=2.1e-15 Score=164.49 Aligned_cols=238 Identities=15% Similarity=0.189 Sum_probs=148.2
Q ss_pred EEECCcCCC--ceEEEecCCEEEEEEEeCCCC-ceeEEecccc--cCCCCCCCCCCc----ccccccCCCCeEEEEEEec
Q 039963 56 VTVNGQFPG--PTLQVRDGDTLIITTINRAQY-NITLHWHGVN--LKGNPWADGPEY----VTQCPIQPGRSYTYQFTIE 126 (578)
Q Consensus 56 ~~~NG~~Pg--P~i~v~~Gd~v~v~l~N~l~~-~~siH~HG~~--~~~~~~~DG~~~----~~~~~i~PG~~~~y~~~~~ 126 (578)
+++||+.+. +++.+++|+++++||.|.... ...++..|.. +.. .||.+- +....|.|||+++..++.
T Consensus 249 ~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa---~DG~~v~Pv~vd~l~I~pGeRyDVlV~~- 324 (587)
T TIGR01480 249 YLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA---VDGQYVHPVSVDEFRIAPAETFDVIVEP- 324 (587)
T ss_pred EEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE---cCCcCcCceEeCeEEEcCcceeEEEEec-
Confidence 679999764 689999999999999999764 3456666643 333 577532 345568999999999986
Q ss_pred CCCcceeEecccccccccceEEEEEecCC-CCCCC-CCCC----CCceee------------eec-----cc--------
Q 039963 127 GQEGTLWWHAHSRWIRATVYGAIIIYPRI-GSSYP-FPVP----NREIPI------------LLG-----EW-------- 175 (578)
Q Consensus 127 ~~~Gt~~YH~h~~~~~~Gl~G~liV~~~~-~~~~~-~~~~----d~e~~l------------~~~-----d~-------- 175 (578)
...|.|+......+. .|...+.+..... ..+.| .+.. -.+... .+. +-
T Consensus 325 ~~~g~~~i~a~~~~~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (587)
T TIGR01480 325 TGDDAFTIFAQDSDR-TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNA 403 (587)
T ss_pred CCCceEEEEEEecCC-CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccc
Confidence 466899887654322 2444333332211 11111 1000 000000 000 00
Q ss_pred --ccC----------------------------------------ChHHHHH-HHHhc------CCCC----------CC
Q 039963 176 --WDK----------------------------------------NPMDVLM-QAIFT------GAAP----------NV 196 (578)
Q Consensus 176 --~~~----------------------------------------~~~~~~~-~~~~~------g~~~----------~~ 196 (578)
.+. .....+. ..+.. ...+ ..
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m 483 (587)
T TIGR01480 404 PMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNM 483 (587)
T ss_pred cCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCC
Confidence 000 0000000 00000 0000 11
Q ss_pred Cc-eEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCce
Q 039963 197 SD-AFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQT 275 (578)
Q Consensus 197 ~~-~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger 275 (578)
.. .|+|||+.++ +.+.++++.||++||||+|.+ ...|+||+|||.|.++..||.+ +...|++.|.|||+
T Consensus 484 ~~~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t-~~~HpmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t 553 (587)
T TIGR01480 484 ERFAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDT-MMAHPIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGK 553 (587)
T ss_pred ceeEEEECCccCC-------CCCceEecCCCEEEEEEECCC-CCCcceeEcCceeeeecCCCcc--cccCCceeeCCCCE
Confidence 12 4899999872 335689999999999999987 6789999999999999888863 33458999999999
Q ss_pred EEEEEEeCCCCceeEEEEeecccccccCCCcceEEEEEe
Q 039963 276 TNVLLTADQPPARYYMAARAYNSANVAFDNTTTTAILAY 314 (578)
Q Consensus 276 ~dv~v~~~~~~G~y~i~~~~~~~~~~~~~~~~~~ail~y 314 (578)
+++.|+++ +||.|++|||..... ..+..+.++|
T Consensus 554 ~~~~f~ad-~pG~w~~HCH~l~H~-----~~GM~~~~~v 586 (587)
T TIGR01480 554 RSFRVTAD-ALGRWAYHCHMLLHM-----EAGMFREVTV 586 (587)
T ss_pred EEEEEECC-CCeEEEEcCCCHHHH-----hCcCcEEEEe
Confidence 99999999 789999999963222 2345555555
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.47 E-value=5e-12 Score=136.99 Aligned_cols=233 Identities=15% Similarity=0.167 Sum_probs=141.7
Q ss_pred eeeEEEECCcCCCceEEEecCCEEEEEEEeCCCC-ceeEEe---cccccCCCCCCCCCCc-----ccccccCCCCeEEEE
Q 039963 52 THNTVTVNGQFPGPTLQVRDGDTLIITTINRAQY-NITLHW---HGVNLKGNPWADGPEY-----VTQCPIQPGRSYTYQ 122 (578)
Q Consensus 52 ~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~-~~siH~---HG~~~~~~~~~DG~~~-----~~~~~i~PG~~~~y~ 122 (578)
....+++||+. .|.+.++ |.++++||.|.... ...+.+ |-+.+.+ .||.+- +....|.|||+++..
T Consensus 211 ~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa---~DG~~l~~P~~v~~l~lapGeR~dvl 285 (523)
T PRK10965 211 FGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA---SDGGLLAEPVKVSELPILMGERFEVL 285 (523)
T ss_pred cCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE---eCCCcccCccEeCeEEECccceEEEE
Confidence 34578999995 6988885 66999999999753 445554 4445554 577432 334568999999999
Q ss_pred EEecCCCcceeEecccccccccc--------eEEEEEecCC--C-CCC--------CCCC----CCCceeeeeccccc--
Q 039963 123 FTIEGQEGTLWWHAHSRWIRATV--------YGAIIIYPRI--G-SSY--------PFPV----PNREIPILLGEWWD-- 177 (578)
Q Consensus 123 ~~~~~~~Gt~~YH~h~~~~~~Gl--------~G~liV~~~~--~-~~~--------~~~~----~d~e~~l~~~d~~~-- 177 (578)
++. .+.|.++...-.... .|+ +-.+.+.... . ... +.+. ..++..+.+..+..
T Consensus 286 v~~-~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 363 (523)
T PRK10965 286 VDT-SDGKAFDLVTLPVSQ-MGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMM 363 (523)
T ss_pred EEc-CCCceEEEEEecccC-cccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchh
Confidence 987 455666654431111 111 1122333111 1 000 0000 01222333221100
Q ss_pred -------CChHHHHHH--------HH--------hcC--C-CC--CCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEE
Q 039963 178 -------KNPMDVLMQ--------AI--------FTG--A-AP--NVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVL 229 (578)
Q Consensus 178 -------~~~~~~~~~--------~~--------~~g--~-~~--~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~r 229 (578)
......... .+ ..+ . .. .....++|||+.++ ...+.++++.|++++
T Consensus 364 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~------~~~~~~~~~~G~~e~ 437 (523)
T PRK10965 364 GMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD------MNKPMFAAKKGQYER 437 (523)
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC------CCCcceecCCCCEEE
Confidence 000000000 00 000 0 00 00012489999863 234668999999999
Q ss_pred EEEEEcCCCCcEEEEEeCceeEEEeecCcccc---eeEeeEEEEccCceEEEEEEeCC---CCceeEEEEeeccc
Q 039963 230 LRIINAAMNQELFFGVANHNLTVVGVDTSYTK---AFSTSVIMIAPGQTTNVLLTADQ---PPARYYMAARAYNS 298 (578)
Q Consensus 230 lrliN~~~~~~~~~~l~gh~~~via~DG~~~~---p~~~d~v~l~pger~dv~v~~~~---~~G~y~i~~~~~~~ 298 (578)
|+|+|.+....|+|||||++|+|++.||.... +.++|+|.|.+ ++++|++++++ .+|.|++|||....
T Consensus 438 w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~H 511 (523)
T PRK10965 438 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEH 511 (523)
T ss_pred EEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhh
Confidence 99999986567999999999999999998764 35799999977 78999999873 45799999997644
No 25
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.45 E-value=7.2e-13 Score=114.89 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=86.1
Q ss_pred HHHHhhhcccccceeEEEE-EE--Eeee---cCCceeeeEE-EECCcCCCceEEEecCCEEEEEEEeCCCCce--eEEec
Q 039963 22 FIFAFVASLSHAEIQFHEF-IE--AKPV---KRLCRTHNTV-TVNGQFPGPTLQVRDGDTLIITTINRAQYNI--TLHWH 92 (578)
Q Consensus 22 ~~~~~~~~~a~~~~~~~~l-~~--~~~~---~~~g~~~~~~-~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~--siH~H 92 (578)
++.+++...|.|..++|++ |+ ++.+ +..|+....+ ++|+++..+.|+|++||+|+++++|..+.++ .++++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~ 90 (135)
T TIGR03096 11 ALGLLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAY 90 (135)
T ss_pred HHHHhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCC
Confidence 4455666777888899999 88 6666 3468887777 9999999899999999999999999987654 34443
Q ss_pred ccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEecccccccccceEE
Q 039963 93 GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRATVYGA 148 (578)
Q Consensus 93 G~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~Gl~G~ 148 (578)
|+ +..|.||++.+++|.+ +++|+|||||..+...--|-|.
T Consensus 91 gi---------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~~H~~~~ 130 (135)
T TIGR03096 91 GI---------------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKNIHLPGS 130 (135)
T ss_pred Cc---------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChhhcCCCc
Confidence 32 1258999999999986 8999999999887644333333
No 26
>PLN02835 oxidoreductase
Probab=99.39 E-value=3.3e-11 Score=131.13 Aligned_cols=253 Identities=17% Similarity=0.194 Sum_probs=153.5
Q ss_pred eeEEEECCcCCCceEEEecCCEEEEEEEeCCCC-ceeEEecccc--cCCCCCCCCCCc----ccccccCCCCeEEEEEEe
Q 039963 53 HNTVTVNGQFPGPTLQVRDGDTLIITTINRAQY-NITLHWHGVN--LKGNPWADGPEY----VTQCPIQPGRSYTYQFTI 125 (578)
Q Consensus 53 ~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~-~~siH~HG~~--~~~~~~~DG~~~----~~~~~i~PG~~~~y~~~~ 125 (578)
...+++||+. .|++.+++|+++++||.|.... ...+|..|.. +.. .||.+- +....|.||||++..+++
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~---~DG~~v~p~~~~~l~i~~GqRydvlv~~ 266 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE---VEGSHTIQNIYDSLDVHVGQSVAVLVTL 266 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE---ECCccCCCceeeEEEECcCceEEEEEEc
Confidence 3578999996 4899999999999999999864 4566666654 333 688532 234558999999999998
Q ss_pred cCCCcceeEecccccccc--cceEEEEEecCCCC--CCCCCC---CC--------CceeeeecccccCChH--HH-H---
Q 039963 126 EGQEGTLWWHAHSRWIRA--TVYGAIIIYPRIGS--SYPFPV---PN--------REIPILLGEWWDKNPM--DV-L--- 184 (578)
Q Consensus 126 ~~~~Gt~~YH~h~~~~~~--Gl~G~liV~~~~~~--~~~~~~---~d--------~e~~l~~~d~~~~~~~--~~-~--- 184 (578)
+..+|.||...-...... ...+ ++....... ..+.+. .+ ......+......... .. .
T Consensus 267 ~~~~g~y~i~a~~~~~~~~~~~~a-il~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 345 (539)
T PLN02835 267 NQSPKDYYIVASTRFTRQILTATA-VLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKI 345 (539)
T ss_pred CCCCCcEEEEEEccccCCCcceEE-EEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCcccccccc
Confidence 666899998753211111 2233 333322111 011110 00 0000001100000000 00 0
Q ss_pred --HHHH--hcCC-CCCCCceEEEcCcCCCCCC---------------CC-------CC-----ceeEEEEecCcEEEEEE
Q 039963 185 --MQAI--FTGA-APNVSDAFTINGQPGDLYR---------------CS-------RR-----ETVRFQVEAGETVLLRI 232 (578)
Q Consensus 185 --~~~~--~~g~-~~~~~~~~liNG~~~~~~~---------------~~-------~~-----~~~~l~v~~G~~~rlrl 232 (578)
.... .... .......+.|||..+.... |. .. ..-.+.++.|+++.|-|
T Consensus 346 ~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi 425 (539)
T PLN02835 346 TPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVF 425 (539)
T ss_pred CCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEE
Confidence 0000 0000 0001136788998763210 10 00 12345677899999999
Q ss_pred EEcCCCCcEEEEEeCceeEEEee-cCcc----------cceeEeeEEEEccCceEEEEEEeCCCCceeEEEEeecccccc
Q 039963 233 INAAMNQELFFGVANHNLTVVGV-DTSY----------TKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARAYNSANV 301 (578)
Q Consensus 233 iN~~~~~~~~~~l~gh~~~via~-DG~~----------~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~~~~~~ 301 (578)
-|.+ ...|+||||||.|+|++. +|.+ ..|..+|++.|.++..+.|.|+++ +||.|.||||....
T Consensus 426 ~N~~-~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aD-NPG~Wl~HCHi~~H--- 500 (539)
T PLN02835 426 QNNE-KTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLD-NQGMWNMRSAIWER--- 500 (539)
T ss_pred ECCC-CCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECc-CCEEeeeeecchhh---
Confidence 9986 557899999999999997 5522 248999999999999999999999 89999999996332
Q ss_pred cCCCcceEEEEEeccC
Q 039963 302 AFDNTTTTAILAYKSA 317 (578)
Q Consensus 302 ~~~~~~~~ail~y~~~ 317 (578)
...++.+++++...
T Consensus 501 --~~~Gm~~~~~V~~~ 514 (539)
T PLN02835 501 --QYLGQQFYLRVWNQ 514 (539)
T ss_pred --hhcccEEEEEEccC
Confidence 23466667776544
No 27
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.39 E-value=6.9e-11 Score=129.56 Aligned_cols=254 Identities=15% Similarity=0.161 Sum_probs=148.7
Q ss_pred eEEEECCcC-C--------CceEEEecCCEEEEEEEeCCC-CceeEEecccc--cCCCCCCCCCCc----ccccccCCCC
Q 039963 54 NTVTVNGQF-P--------GPTLQVRDGDTLIITTINRAQ-YNITLHWHGVN--LKGNPWADGPEY----VTQCPIQPGR 117 (578)
Q Consensus 54 ~~~~~NG~~-P--------gP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~--~~~~~~~DG~~~----~~~~~i~PG~ 117 (578)
..+++||+. + -++|+|++|+++++||.|... ....+|.+|.. +.. .||++- +....|.|||
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa---~DG~~~~P~~~~~l~i~~Gq 243 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE---VDATYTKPFKTKTIVIGPGQ 243 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE---eCCcccCceEeCeEEecCCC
Confidence 568999973 1 148999999999999999975 34556666653 333 688632 3345689999
Q ss_pred eEEEEEEecCCCcceeEeccccc--c---cc-cceEEEEEecCCCCCCCC----CCCCCc---------e-eeeeccccc
Q 039963 118 SYTYQFTIEGQEGTLWWHAHSRW--I---RA-TVYGAIIIYPRIGSSYPF----PVPNRE---------I-PILLGEWWD 177 (578)
Q Consensus 118 ~~~y~~~~~~~~Gt~~YH~h~~~--~---~~-Gl~G~liV~~~~~~~~~~----~~~d~e---------~-~l~~~d~~~ 177 (578)
+++..+++++.+|.||.+.+... . .. ...+.|...+......+. +..+.. . .+....+..
T Consensus 244 RydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 323 (539)
T TIGR03389 244 TTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPA 323 (539)
T ss_pred EEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCC
Confidence 99999998556899999876421 1 11 122333332222111110 000000 0 000000000
Q ss_pred ---CChHH----HHHHHHhcCC-----CC-CCCceEEEcCcCCCCC---------------------------CC-CCC-
Q 039963 178 ---KNPMD----VLMQAIFTGA-----AP-NVSDAFTINGQPGDLY---------------------------RC-SRR- 215 (578)
Q Consensus 178 ---~~~~~----~~~~~~~~g~-----~~-~~~~~~liNG~~~~~~---------------------------~~-~~~- 215 (578)
..... .+........ .. ...-.+.|||..+... -| ++.
T Consensus 324 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 403 (539)
T TIGR03389 324 NVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTN 403 (539)
T ss_pred CCCCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCC
Confidence 00000 0000000000 00 0012457888753200 00 000
Q ss_pred ---------ceeEEEEecCcEEEEEEEEcCC--CCcEEEEEeCceeEEEeec-Ccc-----------cceeEeeEEEEcc
Q 039963 216 ---------ETVRFQVEAGETVLLRIINAAM--NQELFFGVANHNLTVVGVD-TSY-----------TKAFSTSVIMIAP 272 (578)
Q Consensus 216 ---------~~~~l~v~~G~~~rlrliN~~~--~~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~v~l~p 272 (578)
....+.++.|+++++.|.|.+. ...|+||||||.|+|++.. |.+ ..|..+|++.|.+
T Consensus 404 ~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~ 483 (539)
T TIGR03389 404 LPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPT 483 (539)
T ss_pred cccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCC
Confidence 1235788899999999999752 3479999999999999886 321 2477899999999
Q ss_pred CceEEEEEEeCCCCceeEEEEeecccccccCCCcceEEEEEecc
Q 039963 273 GQTTNVLLTADQPPARYYMAARAYNSANVAFDNTTTTAILAYKS 316 (578)
Q Consensus 273 ger~dv~v~~~~~~G~y~i~~~~~~~~~~~~~~~~~~ail~y~~ 316 (578)
+.-+.|.++++ +||.|.+|||..... ..+...++.+..
T Consensus 484 ~g~vvirf~ad-NPG~W~~HCHi~~H~-----~~Gm~~~~~~~~ 521 (539)
T TIGR03389 484 GGWAAIRFVAD-NPGVWFMHCHLEVHT-----TWGLKMAFLVDN 521 (539)
T ss_pred CceEEEEEecC-CCeEEEEEecccchh-----hhcceEEEEEcc
Confidence 99999999999 899999999964332 234455555543
No 28
>PRK10883 FtsI repressor; Provisional
Probab=99.38 E-value=2.3e-11 Score=130.58 Aligned_cols=220 Identities=15% Similarity=0.175 Sum_probs=134.2
Q ss_pred eeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCC-ceeEEe-cc--cccCCCCCCCCCCc-----ccccccCCCCeEEE
Q 039963 51 RTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQY-NITLHW-HG--VNLKGNPWADGPEY-----VTQCPIQPGRSYTY 121 (578)
Q Consensus 51 ~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~-~~siH~-HG--~~~~~~~~~DG~~~-----~~~~~i~PG~~~~y 121 (578)
.....+++||+. .|.|.|+.| ++++||.|.... ...+++ +| +.+.+ .||... +....|.|||+++.
T Consensus 207 ~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa---~DGg~~~~P~~~~~l~l~pGeR~dv 281 (471)
T PRK10883 207 FVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA---GDQGFLPAPVSVKQLSLAPGERREI 281 (471)
T ss_pred ccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE---eCCCcccCCcEeCeEEECCCCeEEE
Confidence 345678999985 699999875 899999999864 456666 44 44444 575322 34556899999999
Q ss_pred EEEecCCCcceeEecccc-cccccceE------------EEEEecCCC---CCCCCCCCCCceeeeecccccCChHHHHH
Q 039963 122 QFTIEGQEGTLWWHAHSR-WIRATVYG------------AIIIYPRIG---SSYPFPVPNREIPILLGEWWDKNPMDVLM 185 (578)
Q Consensus 122 ~~~~~~~~Gt~~YH~h~~-~~~~Gl~G------------~liV~~~~~---~~~~~~~~d~e~~l~~~d~~~~~~~~~~~ 185 (578)
.++. .+.+.+.+++-.. +..+.+.+ .+-++.... ...+.+..... ........... .
T Consensus 282 lVd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-----~~~~~~~~~~~-~ 354 (471)
T PRK10883 282 LVDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLP-----DEIMEGSPIRS-R 354 (471)
T ss_pred EEEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEccccccCCCCcCChhhcC-----CCCCCCCCcce-E
Confidence 9987 4455666655311 11111111 111222110 00001000000 00000000000 0
Q ss_pred HHHhcCCCCCCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccce---
Q 039963 186 QAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKA--- 262 (578)
Q Consensus 186 ~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p--- 262 (578)
..... .+.++|||+.+. ...+.++++.|++++|+|.|. ..|+||||||.|+|++.||....+
T Consensus 355 ~~~l~------~~~~~INg~~~~------~~~~~~~~~~g~~e~W~~~n~---~~HP~HlHg~~FqVl~~~G~~~~~~~~ 419 (471)
T PRK10883 355 EISLG------DDLPGINGALWD------MNRIDVTAQQGTWERWTVRAD---MPQAFHIEGVMFLIRNVNGAMPFPEDR 419 (471)
T ss_pred EEEec------CCcCccCCcccC------CCcceeecCCCCEEEEEEECC---CCcCEeECCccEEEEEecCCCCCcccc
Confidence 00000 123479999873 223457899999999999886 368999999999999999985533
Q ss_pred eEeeEEEEccCceEEEEEEeCCCCc---eeEEEEeecccc
Q 039963 263 FSTSVIMIAPGQTTNVLLTADQPPA---RYYMAARAYNSA 299 (578)
Q Consensus 263 ~~~d~v~l~pger~dv~v~~~~~~G---~y~i~~~~~~~~ 299 (578)
-++|||.|. +++.|++++++..| .|++|||.+...
T Consensus 420 gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHe 457 (471)
T PRK10883 420 GWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMA 457 (471)
T ss_pred CcCcEEEcC--CeEEEEEEecCCCCCCCcEEeeccccccc
Confidence 468999994 47999999995433 799999986543
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.28 E-value=8.8e-11 Score=126.45 Aligned_cols=235 Identities=20% Similarity=0.193 Sum_probs=144.9
Q ss_pred ceeeeEEEECCcCCCceEEEecCCEEEEEEEeCC-CCceeEEecccccCCCCCCCCCC----cccccccCCCCeEEEEEE
Q 039963 50 CRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRA-QYNITLHWHGVNLKGNPWADGPE----YVTQCPIQPGRSYTYQFT 124 (578)
Q Consensus 50 g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~~~~~i~PG~~~~y~~~ 124 (578)
|.......+||+. -|.+.+ ++..+++||.|.. .....+++.|....-- ..||.+ .+.+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~-~p~~~~-~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi-~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPFKAV-PGGVVRLRLLNAGNARTYHLALGGGPLTVI-AVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cceeec-CCCeEEEEEEecCCceEEEEEecCceEEEE-EeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 5566777888843 255544 5555999999998 5556666664432111 146644 455678999999999998
Q ss_pred ecCCCcceeEecccccccccceEEEEEecCCCCCCCC-------CCCC---CceeeeecccccCChHHHHHHHHhcCCCC
Q 039963 125 IEGQEGTLWWHAHSRWIRATVYGAIIIYPRIGSSYPF-------PVPN---REIPILLGEWWDKNPMDVLMQAIFTGAAP 194 (578)
Q Consensus 125 ~~~~~Gt~~YH~h~~~~~~Gl~G~liV~~~~~~~~~~-------~~~d---~e~~l~~~d~~~~~~~~~~~~~~~~g~~~ 194 (578)
. ...|++-+.+.......-+.+..-........++. ...+ ......................... ..
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLI--GG 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchhh--cc
Confidence 7 44788888887622112222222221111100000 0011 1111111111111100000000000 01
Q ss_pred CCCceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCccc--ceeEeeEEEEcc
Q 039963 195 NVSDAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYT--KAFSTSVIMIAP 272 (578)
Q Consensus 195 ~~~~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~--~p~~~d~v~l~p 272 (578)
.....+.+||+.++. +...+.++.|+++||+|.|-+. ..|+||+||+.|+|++.|.... .+.++|++.+.|
T Consensus 340 ~~~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDTv~v~~ 412 (451)
T COG2132 340 IGGYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAP 412 (451)
T ss_pred cccccccccCccCCC------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecCCCcccccCccceEEEeCC
Confidence 123568899988731 3567899999999999999996 8899999999999999982221 457899999999
Q ss_pred CceEEEEEEeCCCCceeEEEEeeccc
Q 039963 273 GQTTNVLLTADQPPARYYMAARAYNS 298 (578)
Q Consensus 273 ger~dv~v~~~~~~G~y~i~~~~~~~ 298 (578)
++++.+.++++ .+|.|++|||....
T Consensus 413 ~~~~~v~~~a~-~~g~~~~HCH~l~H 437 (451)
T COG2132 413 GERLLVRFDAD-YPGPWMFHCHILEH 437 (451)
T ss_pred CeEEEEEEeCC-CCCceEEeccchhH
Confidence 99999999999 78999999997543
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=99.16 E-value=3.5e-09 Score=115.15 Aligned_cols=237 Identities=19% Similarity=0.219 Sum_probs=141.4
Q ss_pred eEEEECCcCC-CceEEEecCCEEEEEEEeCCCC-ceeEEecc--cccCCCCCCCCCC----cccccccCCCCeEEEEEEe
Q 039963 54 NTVTVNGQFP-GPTLQVRDGDTLIITTINRAQY-NITLHWHG--VNLKGNPWADGPE----YVTQCPIQPGRSYTYQFTI 125 (578)
Q Consensus 54 ~~~~~NG~~P-gP~i~v~~Gd~v~v~l~N~l~~-~~siH~HG--~~~~~~~~~DG~~----~~~~~~i~PG~~~~y~~~~ 125 (578)
..+++||+.+ .|+|.+++|+++++||.|.... ...++..| +.+.. .||.+ .+....|.||||++..+++
T Consensus 189 d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa---~DG~~v~p~~~~~l~i~~GqRydvlv~a 265 (545)
T PLN02168 189 DGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE---TEGTYVQKRVYSSLDIHVGQSYSVLVTA 265 (545)
T ss_pred CEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE---ECCeECCCceeeEEEEcCCceEEEEEEc
Confidence 5689999853 4899999999999999999754 34455544 44443 57742 1345568999999999998
Q ss_pred cCCC-c---ceeEecccccccc-cceEEEEEecCCCCC--CCCC---CC-CC----ceeeeec-ccc----cCChHH---
Q 039963 126 EGQE-G---TLWWHAHSRWIRA-TVYGAIIIYPRIGSS--YPFP---VP-NR----EIPILLG-EWW----DKNPMD--- 182 (578)
Q Consensus 126 ~~~~-G---t~~YH~h~~~~~~-Gl~G~liV~~~~~~~--~~~~---~~-d~----e~~l~~~-d~~----~~~~~~--- 182 (578)
++++ | .||...-...... --..+++........ .|.+ .. +. +..+.+. ... ......
T Consensus 266 ~~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~ 345 (545)
T PLN02168 266 KTDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYH 345 (545)
T ss_pred CCCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCccccc
Confidence 5343 4 7997765421111 111244444332111 1111 10 00 1100000 000 000000
Q ss_pred H----HHHHH-hcCCC--CCCCceEEEcCcCCCCC----------C----CCCC-------------ceeEEEEecCcEE
Q 039963 183 V----LMQAI-FTGAA--PNVSDAFTINGQPGDLY----------R----CSRR-------------ETVRFQVEAGETV 228 (578)
Q Consensus 183 ~----~~~~~-~~g~~--~~~~~~~liNG~~~~~~----------~----~~~~-------------~~~~l~v~~G~~~ 228 (578)
. ..... ..... ......++|||..+... . ...+ ..-.++++.|++|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~V 425 (545)
T PLN02168 346 YGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFY 425 (545)
T ss_pred ccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEE
Confidence 0 00000 00000 00113578999876411 0 0000 1234678889999
Q ss_pred EEEEEEcCCCCcEEEEEeCceeEEEee-----cC------cccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEee
Q 039963 229 LLRIINAAMNQELFFGVANHNLTVVGV-----DT------SYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARA 295 (578)
Q Consensus 229 rlrliN~~~~~~~~~~l~gh~~~via~-----DG------~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~ 295 (578)
.+-|-|.. ...|+||||||.|+|++. |+ ++..|..+|++.|.++.=+.|.++++ +||-|.||||.
T Consensus 426 eiViqn~~-~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~Wl~HCHi 501 (545)
T PLN02168 426 HIVFQNPL-FSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMD-NQGMWNVRSQK 501 (545)
T ss_pred EEEEeCCC-CCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEcc-CCeEEeeeecC
Confidence 99888875 558899999999999976 21 23468899999999999999999999 89999999994
No 31
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.15 E-value=1e-09 Score=120.26 Aligned_cols=228 Identities=18% Similarity=0.183 Sum_probs=132.9
Q ss_pred eEEEecCCEEEEEEEeCCC-CceeEEecc--cccCCCCCCCCCCc----ccccccCCCCeEEEEEEecCCC-cceeEecc
Q 039963 66 TLQVRDGDTLIITTINRAQ-YNITLHWHG--VNLKGNPWADGPEY----VTQCPIQPGRSYTYQFTIEGQE-GTLWWHAH 137 (578)
Q Consensus 66 ~i~v~~Gd~v~v~l~N~l~-~~~siH~HG--~~~~~~~~~DG~~~----~~~~~i~PG~~~~y~~~~~~~~-Gt~~YH~h 137 (578)
+|.|++|+++++||.|... ....++.+| +.+.. .||.+- +....|.||||++..++++..+ |.||...-
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa---~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~ 280 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE---ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVG 280 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE---eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEe
Confidence 5899999999999999874 344444444 44444 577532 3345589999999999984444 58998765
Q ss_pred cccccc--cceEEEEEecCCCCCC-C------CCCCCC-------ceeeeecccccCChHHHHHH-H-HhcCCCCCCCce
Q 039963 138 SRWIRA--TVYGAIIIYPRIGSSY-P------FPVPNR-------EIPILLGEWWDKNPMDVLMQ-A-IFTGAAPNVSDA 199 (578)
Q Consensus 138 ~~~~~~--Gl~G~liV~~~~~~~~-~------~~~~d~-------e~~l~~~d~~~~~~~~~~~~-~-~~~g~~~~~~~~ 199 (578)
...... ....+++......... + .+..+. +..++-.............. . ...+........
T Consensus 281 ~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (541)
T TIGR03388 281 VRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTK 360 (541)
T ss_pred cccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEE
Confidence 433211 1123555543221100 0 000000 00000000000000000000 0 000000001124
Q ss_pred EEEcCcCCCCC-------------------------CCC------------CCceeEEEEecCcEEEEEEEEcCC-----
Q 039963 200 FTINGQPGDLY-------------------------RCS------------RRETVRFQVEAGETVLLRIINAAM----- 237 (578)
Q Consensus 200 ~liNG~~~~~~-------------------------~~~------------~~~~~~l~v~~G~~~rlrliN~~~----- 237 (578)
+++||..+... .|. ....-.+.++.|++|.+.|.|...
T Consensus 361 ~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~ 440 (541)
T TIGR03388 361 WAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNN 440 (541)
T ss_pred EEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCC
Confidence 67888765300 000 001134788899999999999752
Q ss_pred CCcEEEEEeCceeEEEeec-Ccc-----------cceeEeeEEEEccCceEEEEEEeCCCCceeEEEEeecc
Q 039963 238 NQELFFGVANHNLTVVGVD-TSY-----------TKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARAYN 297 (578)
Q Consensus 238 ~~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~~ 297 (578)
...|+||||||.|+|++.. |.+ ..|..+|++.|.++.-+.|.++++ +||-|.+|||...
T Consensus 441 ~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad-NPG~W~~HCHi~~ 511 (541)
T TIGR03388 441 SETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD-NPGVWAFHCHIEP 511 (541)
T ss_pred CCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC-CCeEeeeeccchh
Confidence 4568999999999999986 432 147789999999999999999999 8999999999643
No 32
>PLN02991 oxidoreductase
Probab=99.14 E-value=1.2e-08 Score=110.82 Aligned_cols=253 Identities=14% Similarity=0.182 Sum_probs=148.0
Q ss_pred eeEEEECCcCCCceEEEecCCEEEEEEEeCCCC-ceeEEecc--cccCCCCCCCCCCc----ccccccCCCCeEEEEEEe
Q 039963 53 HNTVTVNGQFPGPTLQVRDGDTLIITTINRAQY-NITLHWHG--VNLKGNPWADGPEY----VTQCPIQPGRSYTYQFTI 125 (578)
Q Consensus 53 ~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~-~~siH~HG--~~~~~~~~~DG~~~----~~~~~i~PG~~~~y~~~~ 125 (578)
-...++||+...+++.|++|+++++||.|.... ...++..| +.+.. .||.+- +....|.||||++...++
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa---~DG~~~~p~~~~~l~i~~GQRydvlv~a 266 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE---VEGTHTIQTPFSSLDVHVGQSYSVLITA 266 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE---eCCccccceeeeEEEEcCCcEEEEEEEC
Confidence 467899999655899999999999999999764 33444444 44444 588642 345568999999999998
Q ss_pred cCCCcceeEecccccccc--cceEEEEEecCCCCC--CCCCC--CCCceeeeec---cccc-----CC-hHH---H----
Q 039963 126 EGQEGTLWWHAHSRWIRA--TVYGAIIIYPRIGSS--YPFPV--PNREIPILLG---EWWD-----KN-PMD---V---- 183 (578)
Q Consensus 126 ~~~~Gt~~YH~h~~~~~~--Gl~G~liV~~~~~~~--~~~~~--~d~e~~l~~~---d~~~-----~~-~~~---~---- 183 (578)
+...|.||.-........ .-. +|+-.+..... .+.+. .+.+...-.. ++.. .. ... .
T Consensus 267 ~~~~~~y~i~~~~~~~~~~~~~~-AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~ 345 (543)
T PLN02991 267 DQPAKDYYIVVSSRFTSKILITT-GVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKIN 345 (543)
T ss_pred CCCCCcEEEEEeeccCCCCcceE-EEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccc
Confidence 767788986543211111 112 33333222110 11110 0000000000 0000 00 000 0
Q ss_pred HHHHH--hcCCC-CCCCceEEEcCcCCCCC----------CCCC-----------------CceeEEEEecCcEEEEEEE
Q 039963 184 LMQAI--FTGAA-PNVSDAFTINGQPGDLY----------RCSR-----------------RETVRFQVEAGETVLLRII 233 (578)
Q Consensus 184 ~~~~~--~~g~~-~~~~~~~liNG~~~~~~----------~~~~-----------------~~~~~l~v~~G~~~rlrli 233 (578)
..... ..+.. ......+.|||..+... +.++ ...-.+.++.|+.|.+-|-
T Consensus 346 ~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViq 425 (543)
T PLN02991 346 ITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFE 425 (543)
T ss_pred cceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEe
Confidence 00000 00000 00113577888875310 0000 0112456788899999888
Q ss_pred EcCCCCcEEEEEeCceeEEEeec-C----------cccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEeeccccccc
Q 039963 234 NAAMNQELFFGVANHNLTVVGVD-T----------SYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARAYNSANVA 302 (578)
Q Consensus 234 N~~~~~~~~~~l~gh~~~via~D-G----------~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~~~~~~~ 302 (578)
|.. ...|+||||||.|+|++.. | ++..|..+|++.|.++.=+.|.|+++ +||-|.+|||.. ..
T Consensus 426 n~~-~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~W~~HCHi~-~h--- 499 (543)
T PLN02991 426 NWE-DIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLD-NVGMWNLRSELW-ER--- 499 (543)
T ss_pred CCC-CCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECC-CCEEeeeeeCcc-cc---
Confidence 865 4578999999999999853 1 12358899999999999999999999 899999999963 22
Q ss_pred CCCcceEEEEEecc
Q 039963 303 FDNTTTTAILAYKS 316 (578)
Q Consensus 303 ~~~~~~~ail~y~~ 316 (578)
...+...++++..
T Consensus 500 -~~~gm~~~~~v~~ 512 (543)
T PLN02991 500 -QYLGQQFYMRVYT 512 (543)
T ss_pred -ccccEEEEEEecC
Confidence 2345555555543
No 33
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.13 E-value=4.1e-09 Score=115.30 Aligned_cols=239 Identities=19% Similarity=0.193 Sum_probs=139.4
Q ss_pred eEEEECCcC---------------CCceEEEecCCEEEEEEEeCCCC-ceeEEecc---cccCCCCCCCCCCc----ccc
Q 039963 54 NTVTVNGQF---------------PGPTLQVRDGDTLIITTINRAQY-NITLHWHG---VNLKGNPWADGPEY----VTQ 110 (578)
Q Consensus 54 ~~~~~NG~~---------------PgP~i~v~~Gd~v~v~l~N~l~~-~~siH~HG---~~~~~~~~~DG~~~----~~~ 110 (578)
...++||+. ..|+|+|++|+++++||.|.... ...+++.| +.+.. .||..- +..
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa---~DG~~~~P~~v~~ 248 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE---ADGSYTKPAKIDH 248 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE---eCCCCCCceEeCe
Confidence 457899973 12789999999999999999764 33455544 44544 688632 234
Q ss_pred cccCCCCeEEEEEEecCC-------CcceeEecccccccc--cceEEEEEec-CCCCCCC-CC-C----C------CCce
Q 039963 111 CPIQPGRSYTYQFTIEGQ-------EGTLWWHAHSRWIRA--TVYGAIIIYP-RIGSSYP-FP-V----P------NREI 168 (578)
Q Consensus 111 ~~i~PG~~~~y~~~~~~~-------~Gt~~YH~h~~~~~~--Gl~G~liV~~-~~~~~~~-~~-~----~------d~e~ 168 (578)
..|.||||++..+++++. +|-||...-...... ...+ |+... ......+ .+ . . ..+.
T Consensus 249 l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~a-iL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 327 (538)
T TIGR03390 249 LQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYA-VLRYRSDKASKLPSVPETPPLPLPNSTYDWLEY 327 (538)
T ss_pred EEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEE-EEEeCCCCCCCCCCCCCCCCCCccCcchhhhhe
Confidence 458999999999998433 488986653221111 2233 34442 2111111 00 0 0 0111
Q ss_pred eee-ecccc---cCChHHHHHHH-HhcCCC---CCCCceEEEcCcCCCC--C----------C---C------------C
Q 039963 169 PIL-LGEWW---DKNPMDVLMQA-IFTGAA---PNVSDAFTINGQPGDL--Y----------R---C------------S 213 (578)
Q Consensus 169 ~l~-~~d~~---~~~~~~~~~~~-~~~g~~---~~~~~~~liNG~~~~~--~----------~---~------------~ 213 (578)
.+. +..-. ........... ...+.. ......++|||..+.. . . . .
T Consensus 328 ~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~ 407 (538)
T TIGR03390 328 ELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGF 407 (538)
T ss_pred eeEecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCc
Confidence 111 00000 00000000000 000000 0112468899987642 0 0 0 0
Q ss_pred CCceeEEEEecCcEEEEEEEEcC-------CCCcEEEEEeCceeEEEee-cCcc-----------cceeEeeEEEEc---
Q 039963 214 RRETVRFQVEAGETVLLRIINAA-------MNQELFFGVANHNLTVVGV-DTSY-----------TKAFSTSVIMIA--- 271 (578)
Q Consensus 214 ~~~~~~l~v~~G~~~rlrliN~~-------~~~~~~~~l~gh~~~via~-DG~~-----------~~p~~~d~v~l~--- 271 (578)
....-.+.++.|++|++.|.|.. ....|+||||||+|+|++. +|.+ ..|..+|++.|.
T Consensus 408 ~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~ 487 (538)
T TIGR03390 408 DPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYA 487 (538)
T ss_pred CcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeecccc
Confidence 00112567888999999999975 2567999999999999995 4533 248899999984
Q ss_pred -------cCceEEEEEEeCCCCceeEEEEeecc
Q 039963 272 -------PGQTTNVLLTADQPPARYYMAARAYN 297 (578)
Q Consensus 272 -------pger~dv~v~~~~~~G~y~i~~~~~~ 297 (578)
++.-+.|.++++ +||.|.||||...
T Consensus 488 ~~~~~~~~~~~~~ir~~~d-NPG~W~~HCHi~~ 519 (538)
T TIGR03390 488 VKVVPGAPAGWRAWRIRVT-NPGVWMMHCHILQ 519 (538)
T ss_pred ccccccCCCceEEEEEEcC-CCeeEEEeccchh
Confidence 778889999998 8999999999643
No 34
>PLN02604 oxidoreductase
Probab=99.11 E-value=2.4e-09 Score=117.88 Aligned_cols=227 Identities=16% Similarity=0.177 Sum_probs=132.3
Q ss_pred ceEEEecCCEEEEEEEeCCCC-ceeEEe--cccccCCCCCCCCCCc----ccccccCCCCeEEEEEEecCCCc-ceeEec
Q 039963 65 PTLQVRDGDTLIITTINRAQY-NITLHW--HGVNLKGNPWADGPEY----VTQCPIQPGRSYTYQFTIEGQEG-TLWWHA 136 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~-~~siH~--HG~~~~~~~~~DG~~~----~~~~~i~PG~~~~y~~~~~~~~G-t~~YH~ 136 (578)
++|.+++|+++++||.|.... ...++. |-+.+.. .||.+- +....|.||||++..++++..+| .||-..
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa---~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira 300 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVE---ADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTT 300 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEE---eCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEE
Confidence 589999999999999999753 333444 4444444 577532 33456899999999999855555 799875
Q ss_pred cccccc---ccceEEEEEecCCC--CCCCCCCCC----Cceeeeeccc---------ccCChHHHHHHH--HhcCCCCCC
Q 039963 137 HSRWIR---ATVYGAIIIYPRIG--SSYPFPVPN----REIPILLGEW---------WDKNPMDVLMQA--IFTGAAPNV 196 (578)
Q Consensus 137 h~~~~~---~Gl~G~liV~~~~~--~~~~~~~~d----~e~~l~~~d~---------~~~~~~~~~~~~--~~~g~~~~~ 196 (578)
...... ..- .+|+...... ...+...+. .+....+... ............ .........
T Consensus 301 ~~~~~~~~~~~~-~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 379 (566)
T PLN02604 301 SVVSRNNTTPPG-LAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNG 379 (566)
T ss_pred ecccCCCCCcce-eEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCC
Confidence 432211 111 2344433211 000100000 0000000000 000000000000 000000001
Q ss_pred CceEEEcCcCCCCCC---------------CC-----------------------CCceeEEEEecCcEEEEEEEEcCC-
Q 039963 197 SDAFTINGQPGDLYR---------------CS-----------------------RRETVRFQVEAGETVLLRIINAAM- 237 (578)
Q Consensus 197 ~~~~liNG~~~~~~~---------------~~-----------------------~~~~~~l~v~~G~~~rlrliN~~~- 237 (578)
...+.|||..+.... |. ......+.++.|++|.+.|.|...
T Consensus 380 ~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~ 459 (566)
T PLN02604 380 YRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTM 459 (566)
T ss_pred eEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccc
Confidence 236788887653100 00 001124788899999999999852
Q ss_pred ----CCcEEEEEeCceeEEEeec-Ccc-----------cceeEeeEEEEccCceEEEEEEeCCCCceeEEEEeec
Q 039963 238 ----NQELFFGVANHNLTVVGVD-TSY-----------TKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARAY 296 (578)
Q Consensus 238 ----~~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~ 296 (578)
...|+||+|||.|+|++.. |.+ ..|..+|++.+.++.-+.|.++++ +||-|.||||..
T Consensus 460 ~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aD-NPG~WlfHCHI~ 533 (566)
T PLN02604 460 NANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRAD-NPGVWAFHCHIE 533 (566)
T ss_pred cCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECC-CCeEeeEeecch
Confidence 4569999999999999986 432 147789999999999999999999 899999999964
No 35
>PLN02792 oxidoreductase
Probab=99.09 E-value=3.1e-08 Score=107.76 Aligned_cols=254 Identities=18% Similarity=0.187 Sum_probs=148.9
Q ss_pred eeEEEECCcCC--CceEEEecCCEEEEEEEeCCCC-ceeEEeccc--ccCCCCCCCCCC----cccccccCCCCeEEEEE
Q 039963 53 HNTVTVNGQFP--GPTLQVRDGDTLIITTINRAQY-NITLHWHGV--NLKGNPWADGPE----YVTQCPIQPGRSYTYQF 123 (578)
Q Consensus 53 ~~~~~~NG~~P--gP~i~v~~Gd~v~v~l~N~l~~-~~siH~HG~--~~~~~~~~DG~~----~~~~~~i~PG~~~~y~~ 123 (578)
...+++||+-. .++|.|++|+++++||.|.... ...++..|. .+.. .||.+ .+....|.||||++..+
T Consensus 179 ~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~---~DG~~v~p~~~~~l~i~~GqRydVlV 255 (536)
T PLN02792 179 PDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE---VEGTHTVQSMYTSLDIHVGQTYSVLV 255 (536)
T ss_pred CCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE---eCCccCCCcceeEEEEccCceEEEEE
Confidence 46789999842 4789999999999999999764 345555554 3343 57753 23345699999999999
Q ss_pred EecCCCcceeEecccccccc-cceEEEEEecCCCCCC---C-CCCC-CCceeeee---cccccC------ChHH---H--
Q 039963 124 TIEGQEGTLWWHAHSRWIRA-TVYGAIIIYPRIGSSY---P-FPVP-NREIPILL---GEWWDK------NPMD---V-- 183 (578)
Q Consensus 124 ~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~---~-~~~~-d~e~~l~~---~d~~~~------~~~~---~-- 183 (578)
+++..+|.||.......... ...-+|+-........ + .+.. +.....-. .++... .... .
T Consensus 256 ~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 335 (536)
T PLN02792 256 TMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGK 335 (536)
T ss_pred EcCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccce
Confidence 98666799998765321111 1112444443221110 0 0100 00000000 000000 0000 0
Q ss_pred HH--HHH--hcCCC-CCCCceEEEcCcCCCCC----------C---C-C----CC----------ceeEEEEecCcEEEE
Q 039963 184 LM--QAI--FTGAA-PNVSDAFTINGQPGDLY----------R---C-S----RR----------ETVRFQVEAGETVLL 230 (578)
Q Consensus 184 ~~--~~~--~~g~~-~~~~~~~liNG~~~~~~----------~---~-~----~~----------~~~~l~v~~G~~~rl 230 (578)
.. ... ..+.. ....-.+.|||..+... . . + .. ..-.+.++.|++|.+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~Vei 415 (536)
T PLN02792 336 MKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEI 415 (536)
T ss_pred eccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEE
Confidence 00 000 00000 00113467888876310 0 0 0 00 123467888999999
Q ss_pred EEEEcCCCCcEEEEEeCceeEEEeec-C----------cccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEeecccc
Q 039963 231 RIINAAMNQELFFGVANHNLTVVGVD-T----------SYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARAYNSA 299 (578)
Q Consensus 231 rliN~~~~~~~~~~l~gh~~~via~D-G----------~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~~~~ 299 (578)
-|-|.. ...|+||||||.|+|++.- | +++.|..+|++.|.++.=..|.|+++ +||-|.+|||....
T Consensus 416 Viqn~~-~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aD-NPGvW~~HCh~~~h- 492 (536)
T PLN02792 416 IFQNRE-KIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALD-NVGMWNLRSQFWAR- 492 (536)
T ss_pred EEECCC-CCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEee-CCEEEeeeEcchhc-
Confidence 888865 4468999999999999841 1 23368899999999999999999999 89999999985322
Q ss_pred cccCCCcceEEEEEecc
Q 039963 300 NVAFDNTTTTAILAYKS 316 (578)
Q Consensus 300 ~~~~~~~~~~ail~y~~ 316 (578)
...+...++++..
T Consensus 493 ----~~~Gm~~~~~v~~ 505 (536)
T PLN02792 493 ----QYLGQQFYLRVYS 505 (536)
T ss_pred ----cccceEEEEEEcc
Confidence 2345555555543
No 36
>PLN02354 copper ion binding / oxidoreductase
Probab=99.03 E-value=1.9e-08 Score=109.86 Aligned_cols=251 Identities=13% Similarity=0.092 Sum_probs=147.7
Q ss_pred ceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEE-eecCcccceeEeeEEEEccCceE
Q 039963 198 DAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVV-GVDTSYTKAFSTSVIMIAPGQTT 276 (578)
Q Consensus 198 ~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~vi-a~DG~~~~p~~~d~v~l~pger~ 276 (578)
..++|||+. +.|.|++++|+++++++.|.. .....||.||....-. ..||.+ . ..-.|.||+++
T Consensus 47 ~~~~iNGq~---------PGP~I~~~~GD~v~V~v~N~l-~~~ttiHWHGi~q~~~~~~DGv~---~--TQcpI~PG~sf 111 (552)
T PLN02354 47 QVILINGQF---------PGPNINSTSNNNIVINVFNNL-DEPFLLTWSGIQQRKNSWQDGVP---G--TNCPIPPGTNF 111 (552)
T ss_pred EEEEECCCC---------cCCcEEEeCCCEEEEEEEECC-CCCcccccccccCCCCcccCCCc---C--CcCCCCCCCcE
Confidence 589999984 348999999999999999998 4566888888765433 478853 2 34579999999
Q ss_pred EEEEEeCCCCceeEEEEeecccccccCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhcccccCC
Q 039963 277 NVLLTADQPPARYYMAARAYNSANVAFDNTTTTAILAYKSAPCNAKNGGSNSSAPVFPTLPGFNDTATATAYTAQIRSLH 356 (578)
Q Consensus 277 dv~v~~~~~~G~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~ 356 (578)
...|++.+.+|+||+|+|... + ...+..+-|...+.... + .| ++.
T Consensus 112 ~Y~F~~~~q~GT~WYHsH~~~----Q-~~~Gl~G~lII~~~~~~--~---------~p----~~~--------------- 156 (552)
T PLN02354 112 TYHFQPKDQIGSYFYYPSTGM----H-RAAGGFGGLRVNSRLLI--P---------VP----YAD--------------- 156 (552)
T ss_pred EEEEEeCCCCcceEEecCccc----e-ecCCccceEEEcCCcCC--C---------CC----CCC---------------
Confidence 999998645799999998521 1 11233333333332110 0 00 000
Q ss_pred CCCCCCccceEEEEEeecccccCCCCCCCCccCC-CCCeeeEeecceeecCCCcchhhhhhccCCCCcccCCCCCCCCcc
Q 039963 357 EVKVPTVIDEDLFFTVGLGLINCSNPNSPRCQGP-NGTRFAASINNVSFEFPTGNSLMQAYFQDQPGVFTTDFPPVPPIK 435 (578)
Q Consensus 357 p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~iN~~~~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~ 435 (578)
.+.|..+.++ +........-......+. .+..-...|||+....
T Consensus 157 -----~d~e~~l~l~-Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~----------------------------- 201 (552)
T PLN02354 157 -----PEDDYTVLIG-DWYTKSHTALKKFLDSGRTLGRPDGVLINGKSGKG----------------------------- 201 (552)
T ss_pred -----cCceEEEEee-eeccCCHHHHHHHHhcCCCCCCCCeEEEeCCcCCC-----------------------------
Confidence 0001111111 000000000000000000 0000112344321100
Q ss_pred ccCCCCCcccccccCCCceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcc
Q 039963 436 FDYTGNVSRVLWQPLKGTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRR 515 (578)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~r 515 (578)
.......++++.|++++|+|.|.+ .....-|||.||+|.|++..... ..|...
T Consensus 202 -------------~~~~~~~~~v~~Gk~yRlRiINa~--~~~~~~f~IdgH~~tVIa~DG~~------------v~p~~~ 254 (552)
T PLN02354 202 -------------DGKDEPLFTMKPGKTYRYRICNVG--LKSSLNFRIQGHKMKLVEMEGSH------------VLQNDY 254 (552)
T ss_pred -------------CCCCceEEEECCCCEEEEEEEecC--CCceEEEEECCceEEEEEeCCcc------------cCCcce
Confidence 001245689999999999999987 35678999999999999985322 234557
Q ss_pred eeEEeCCCcEEEEEEEeC-CceeEEEEeechh-hHhccceEEEEEec
Q 039963 516 NTIGMPPGGWVAIRFVAN-NPGIWFMHCHLDS-HLTWGLAMAFLVEN 560 (578)
Q Consensus 516 DTv~vpp~~~~~irf~ad-npG~w~~HCHil~-H~d~GM~~~~~V~~ 560 (578)
|++.|.+|++..|-++++ .+|.|-+.-.... -....-.+++.+.+
T Consensus 255 ~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g 301 (552)
T PLN02354 255 DSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEG 301 (552)
T ss_pred eEEEEccCceEEEEEECCCCCCcEEEEEeccccCCCccEEEEEEECC
Confidence 999999999999999997 5788777655211 11122346676644
No 37
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.01 E-value=2.8e-09 Score=95.66 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=72.6
Q ss_pred ceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCccc-----------ceeEeeEEEEccCceEEEEEEeCC
Q 039963 216 ETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYT-----------KAFSTSVIMIAPGQTTNVLLTADQ 284 (578)
Q Consensus 216 ~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~-----------~p~~~d~v~l~pger~dv~v~~~~ 284 (578)
....+.++.|++++|+|.|.+ ...|+||+||+.|+|++.++... .|..+|++.|.+|+++.+.++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~-~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~- 109 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNG-SMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD- 109 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECT-TSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-
T ss_pred CcceEEEeCCCEEEEEEECCC-CCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-
Confidence 447899999999999999988 56899999999999999999873 57899999999999999999998
Q ss_pred CCceeEEEEeec
Q 039963 285 PPARYYMAARAY 296 (578)
Q Consensus 285 ~~G~y~i~~~~~ 296 (578)
.||.|.+|||..
T Consensus 110 ~~G~w~~HCHi~ 121 (138)
T PF07731_consen 110 NPGPWLFHCHIL 121 (138)
T ss_dssp STEEEEEEESSH
T ss_pred cceEEEEEEchH
Confidence 899999999975
No 38
>PLN02191 L-ascorbate oxidase
Probab=98.94 E-value=3.1e-08 Score=108.94 Aligned_cols=234 Identities=16% Similarity=0.156 Sum_probs=133.0
Q ss_pred ECCcCCCceEEEecCCEEEEEEEeCCCC-ceeEEe--cccccCCCCCCCCCCc----ccccccCCCCeEEEEEEecCCC-
Q 039963 58 VNGQFPGPTLQVRDGDTLIITTINRAQY-NITLHW--HGVNLKGNPWADGPEY----VTQCPIQPGRSYTYQFTIEGQE- 129 (578)
Q Consensus 58 ~NG~~PgP~i~v~~Gd~v~v~l~N~l~~-~~siH~--HG~~~~~~~~~DG~~~----~~~~~i~PG~~~~y~~~~~~~~- 129 (578)
.||+.-.++|.+++|++.++||.|.... ...+++ |-+.+.. .||.+- +....|.||||++..++++..+
T Consensus 219 ~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa---~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~ 295 (574)
T PLN02191 219 EGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE---ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPS 295 (574)
T ss_pred cCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE---cCCeeccceEeeeEEEcCCCeEEEEEECCCCCC
Confidence 3443222379999999999999999743 334444 4444554 688642 2345589999999999985555
Q ss_pred cceeEeccccccc----ccceEEEEEecCCCCCC-CC------CCCCC-----ceee-eecccc-cCChHHHHHH-H-Hh
Q 039963 130 GTLWWHAHSRWIR----ATVYGAIIIYPRIGSSY-PF------PVPNR-----EIPI-LLGEWW-DKNPMDVLMQ-A-IF 189 (578)
Q Consensus 130 Gt~~YH~h~~~~~----~Gl~G~liV~~~~~~~~-~~------~~~d~-----e~~l-~~~d~~-~~~~~~~~~~-~-~~ 189 (578)
+.||-..-..... .++ +++-........ +. +..+. .... .+.... .......... . ..
T Consensus 296 ~~y~ira~~~~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 373 (574)
T PLN02191 296 QNYYISVGVRGRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLN 373 (574)
T ss_pred CCEEEEEEccccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEec
Confidence 4899775432211 132 444442211100 10 00000 0000 000000 0000000000 0 00
Q ss_pred cCCCCCCCceEEEcCcCCCCCC------------------------------CC-------CCceeEEEEecCcEEEEEE
Q 039963 190 TGAAPNVSDAFTINGQPGDLYR------------------------------CS-------RRETVRFQVEAGETVLLRI 232 (578)
Q Consensus 190 ~g~~~~~~~~~liNG~~~~~~~------------------------------~~-------~~~~~~l~v~~G~~~rlrl 232 (578)
..........+++||..+.... |. ....-.+.++.|++|.+-|
T Consensus 374 ~~~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi 453 (574)
T PLN02191 374 TQNLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVII 453 (574)
T ss_pred ccceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEE
Confidence 0000001135778887542100 00 0011245677799999988
Q ss_pred EEcC-----CCCcEEEEEeCceeEEEeecC-c-----------ccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEee
Q 039963 233 INAA-----MNQELFFGVANHNLTVVGVDT-S-----------YTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARA 295 (578)
Q Consensus 233 iN~~-----~~~~~~~~l~gh~~~via~DG-~-----------~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~ 295 (578)
.|.. ....|+||+|||+|+|++... . +..|..+|++.+.++.=+-|.++++ +||-|.+|||.
T Consensus 454 ~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aD-NPG~Wl~HCHi 532 (574)
T PLN02191 454 QNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTD-NPGVWFFHCHI 532 (574)
T ss_pred ECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECC-CCEEEEEecCc
Confidence 8875 356799999999999997542 1 2257789999999999999999998 89999999996
Q ss_pred cc
Q 039963 296 YN 297 (578)
Q Consensus 296 ~~ 297 (578)
..
T Consensus 533 ~~ 534 (574)
T PLN02191 533 EP 534 (574)
T ss_pred hh
Confidence 43
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.79 E-value=3.9e-07 Score=99.87 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=68.0
Q ss_pred ceEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEE-eecCcccceeEeeEEEEccCceE
Q 039963 198 DAFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVV-GVDTSYTKAFSTSVIMIAPGQTT 276 (578)
Q Consensus 198 ~~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~vi-a~DG~~~~p~~~d~v~l~pger~ 276 (578)
..++|||+. +.|.|+++.|+++++++.|.. .....||.||..+.-. ..||.. . ..-.|.||+++
T Consensus 49 ~vi~vNGq~---------PGPtI~~~~GD~v~V~V~N~L-~~~ttIHWHGl~q~~t~w~DGv~---~--TQcPI~PG~sf 113 (596)
T PLN00044 49 EAIGINGQF---------PGPALNVTTNWNLVVNVRNAL-DEPLLLTWHGVQQRKSAWQDGVG---G--TNCAIPAGWNW 113 (596)
T ss_pred EEEEEcCcC---------CCCcEEEECCCEEEEEEEeCC-CCCccEEECCccCCCCccccCCC---C--CcCCcCCCCcE
Confidence 479999984 348999999999999999998 4667899999765543 478853 2 44689999999
Q ss_pred EEEEEeCCCCceeEEEEee
Q 039963 277 NVLLTADQPPARYYMAARA 295 (578)
Q Consensus 277 dv~v~~~~~~G~y~i~~~~ 295 (578)
...+++++.+|+||+|+|.
T Consensus 114 tY~F~~~dq~GT~WYHsH~ 132 (596)
T PLN00044 114 TYQFQVKDQVGSFFYAPST 132 (596)
T ss_pred EEEEEeCCCCceeEeeccc
Confidence 9999996568999999995
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.75 E-value=2.8e-08 Score=86.07 Aligned_cols=90 Identities=22% Similarity=0.286 Sum_probs=68.5
Q ss_pred eEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeC
Q 039963 454 KLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVAN 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ad 533 (578)
+++.++.|+.|++.+.|.. ...+.+|+||.+.---...+|. .. --.-.|.||+..+-+|+++
T Consensus 26 PtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~~~~~~DG~--------~~-------~~~~~i~pG~~~~Y~~~~~ 87 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQPPSPWMDGV--------PG-------VTQCPIAPGESFTYEFTAN 87 (117)
T ss_dssp EEEEEETTEEEEEEEEEES---SSGBSEEEETSBSTTGGGGSGG--------TT-------TSGSSBSTTEEEEEEEEES
T ss_pred CEEEEEcCCeeEEEEEecc---ccccccccceeeeeeeeecCCc--------cc-------ccceeEEeecceeeeEeee
Confidence 6899999999999999965 5689999999754110000110 00 0013578999999999998
Q ss_pred C-ceeEEEEeechhhHhccceEEEEEecC
Q 039963 534 N-PGIWFMHCHLDSHLTWGLAMAFLVENG 561 (578)
Q Consensus 534 n-pG~w~~HCHil~H~d~GM~~~~~V~~~ 561 (578)
. +|.|.||||...|...||.+.|.|++.
T Consensus 88 ~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 88 QQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 7 999999999999988999999999763
No 41
>PRK02710 plastocyanin; Provisional
Probab=98.72 E-value=2.2e-07 Score=80.85 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHhhhcccccceeEEEE-EEEeeecCCceeeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeE
Q 039963 11 PWSSCLLLGVLFIFAFVASLSHAEIQFHEF-IEAKPVKRLCRTHNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITL 89 (578)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~l-~~~~~~~~~g~~~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~si 89 (578)
.|+.++..++++++.++++++.+...++++ +... +|. +.|. | +.|.+++||+| +++|....++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~a~a~~~~V~~~~~----~~~----~~F~---P-~~i~v~~Gd~V--~~~N~~~~~H~v 69 (119)
T PRK02710 4 RLRSIAAALVAVVSSFGLGVSSASAETVEVKMGSD----AGM----LAFE---P-STLTIKAGDTV--KWVNNKLAPHNA 69 (119)
T ss_pred hHHHHHHHHHHHHHHHHhcccccccceEEEEEccC----CCe----eEEe---C-CEEEEcCCCEE--EEEECCCCCceE
Confidence 455555554444444444444455555555 4321 121 2332 3 78999999985 567887888888
Q ss_pred EecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEecccccccccceEEEEEe
Q 039963 90 HWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRATVYGAIIIY 152 (578)
Q Consensus 90 H~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~Gl~G~liV~ 152 (578)
.+.|..-. . .+...+.||+++++.|+ .+|+|-|+|-.| ..+||.|.|+|+
T Consensus 70 ~~~~~~~~----~-----~~~~~~~pg~t~~~tF~---~~G~y~y~C~~H-~~~gM~G~I~V~ 119 (119)
T PRK02710 70 VFDGAKEL----S-----HKDLAFAPGESWEETFS---EAGTYTYYCEPH-RGAGMVGKITVE 119 (119)
T ss_pred EecCCccc----c-----ccccccCCCCEEEEEec---CCEEEEEEcCCC-ccCCcEEEEEEC
Confidence 87643110 0 11124789999999995 389999999832 235999999984
No 42
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.52 E-value=2.9e-07 Score=78.26 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=46.8
Q ss_pred ceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEeccccccccc
Q 039963 65 PTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRAT 144 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~G 144 (578)
..|++++|++|+|+++|....++.+...++... ..|.||++.++.|.. .++|+|-|+|..++.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~~--- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHPN--- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS-T---
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCCc---
Confidence 599999999999999999988877777664322 259999999999975 899999999997762
Q ss_pred ceEEEEE
Q 039963 145 VYGAIII 151 (578)
Q Consensus 145 l~G~liV 151 (578)
|.|-|+|
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 7777765
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.49 E-value=1.1e-05 Score=87.78 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=64.3
Q ss_pred eEEEEecCcEEEEEEEEcCC--CCcEEEEEeCceeEEEeec-Ccc------------cceeEeeEEEEccCceEEEEEEe
Q 039963 218 VRFQVEAGETVLLRIINAAM--NQELFFGVANHNLTVVGVD-TSY------------TKAFSTSVIMIAPGQTTNVLLTA 282 (578)
Q Consensus 218 ~~l~v~~G~~~rlrliN~~~--~~~~~~~l~gh~~~via~D-G~~------------~~p~~~d~v~l~pger~dv~v~~ 282 (578)
-.++++-+..+.+-|-|.+. ...|++|||||.|+|++.+ |++ ..|...|++.|.||.=..|.|.+
T Consensus 430 ~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~a 509 (563)
T KOG1263|consen 430 SVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVA 509 (563)
T ss_pred eEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEc
Confidence 35688888999998888873 3446789999999999983 222 23677899999999999999999
Q ss_pred CCCCceeEEEEeec
Q 039963 283 DQPPARYYMAARAY 296 (578)
Q Consensus 283 ~~~~G~y~i~~~~~ 296 (578)
+ +||-|.||||..
T Consensus 510 d-NPG~W~~HCHie 522 (563)
T KOG1263|consen 510 D-NPGVWLMHCHIE 522 (563)
T ss_pred C-CCcEEEEEEecH
Confidence 9 899999999963
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.23 E-value=7e-06 Score=68.99 Aligned_cols=82 Identities=17% Similarity=0.185 Sum_probs=54.8
Q ss_pred ceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCC-CCCCCcccccccCCCCeEEEEEEecCCCcceeEecccccccc
Q 039963 65 PTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPW-ADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA 143 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~-~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~ 143 (578)
..|++++||+| +++|....++++.++......... ..+....+...+.||+++++.|. .+|+|.|+|. ....+
T Consensus 17 ~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~---~~G~y~y~C~-~H~~a 90 (99)
T TIGR02656 17 AKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFS---TPGTYTFYCE-PHRGA 90 (99)
T ss_pred CEEEECCCCEE--EEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeC---CCEEEEEEcC-Ccccc
Confidence 68999999986 566887788888776532111000 00000011224789999999994 3899999998 33335
Q ss_pred cceEEEEEe
Q 039963 144 TVYGAIIIY 152 (578)
Q Consensus 144 Gl~G~liV~ 152 (578)
||.|.|+|+
T Consensus 91 GM~G~I~V~ 99 (99)
T TIGR02656 91 GMVGKITVE 99 (99)
T ss_pred CCEEEEEEC
Confidence 999999984
No 45
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.21 E-value=5.6e-06 Score=74.61 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=58.9
Q ss_pred eEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCC--CCCCCCCCCCCCCCcceeEEeCC---C--cEE
Q 039963 454 KLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFN--PSTDTPKFNLIDPPRRNTIGMPP---G--GWV 526 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~--~~~~~~~~~~~~p~~rDTv~vpp---~--~~~ 526 (578)
+.+.++.|++|++.+.|.+. ...|.|-||.+.- .+. +.-+. .+.....-.+|+ + ++.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~--~~~H~~~I~~~g~--------~~~~~p~mdG------~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDT--DSGHNFDISKRGP--------PYPYMPGMDG------LGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCC--CccccEEeecCCC--------ccccccccCC------CCccccCcccCCCCCCcccee
Confidence 57889999999999999752 3456666653221 110 00000 011112222232 2 246
Q ss_pred EEEEEeCCceeEEEEeechhhHhccceEEEEEe
Q 039963 527 AIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVE 559 (578)
Q Consensus 527 ~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 559 (578)
.+.|+++.+|.|.||||+..|...||.+.+.|+
T Consensus 116 ~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 889998999999999999999999999999874
No 46
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.21 E-value=7.9e-06 Score=66.23 Aligned_cols=73 Identities=23% Similarity=0.365 Sum_probs=53.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEeccccccccc
Q 039963 65 PTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRAT 144 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~G 144 (578)
+.|++++||+|+ +.|....++++++.........+.. ..+.||+++++.| .++|+|-|||-.|. .
T Consensus 11 ~~i~v~~GdtVt--~~N~d~~~Hnv~~~~g~~~~~~~~~-------~~~~~g~~~~~tf---~~~G~y~y~C~~Hp---~ 75 (83)
T TIGR02657 11 PELHVKVGDTVT--WINREAMPHNVHFVAGVLGEAALKG-------PMMKKEQAYSLTF---TEAGTYDYHCTPHP---F 75 (83)
T ss_pred CEEEECCCCEEE--EEECCCCCccEEecCCCCccccccc-------cccCCCCEEEEEC---CCCEEEEEEcCCCC---C
Confidence 789999999975 6798888899987653211111111 1367899988887 46899999998876 5
Q ss_pred ceEEEEEe
Q 039963 145 VYGAIIIY 152 (578)
Q Consensus 145 l~G~liV~ 152 (578)
|.|.|+|+
T Consensus 76 M~G~v~V~ 83 (83)
T TIGR02657 76 MRGKVVVE 83 (83)
T ss_pred CeEEEEEC
Confidence 99999985
No 47
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.16 E-value=7.5e-06 Score=75.29 Aligned_cols=95 Identities=19% Similarity=0.314 Sum_probs=78.2
Q ss_pred CceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEE
Q 039963 452 GTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFV 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ 531 (578)
..+++.++.|++++|+|.|.+ ....+.|++.||+|+|++..... ..|...|++.|.+|+.+.|.++
T Consensus 58 ~~~~~~v~~g~~~rlRliNa~--~~~~~~~~i~gh~~~Via~DG~~------------v~p~~~~~l~l~~G~R~dvlv~ 123 (159)
T PF00394_consen 58 EPPVIKVKPGERYRLRLINAG--ASTSFNFSIDGHPMTVIAADGVP------------VEPYKVDTLVLAPGQRYDVLVT 123 (159)
T ss_dssp TSGEEEEETTTEEEEEEEEES--SS-BEEEEETTBCEEEEEETTEE------------EEEEEESBEEE-TTEEEEEEEE
T ss_pred ccceEEEcCCcEEEEEEEecc--CCeeEEEEeeccceeEeeecccc------------ccccccceEEeeCCeEEEEEEE
Confidence 356899999999999999987 34679999999999999985322 2366789999999999999999
Q ss_pred eCC-ceeEEEEe----echhhHhccceEEEEEec
Q 039963 532 ANN-PGIWFMHC----HLDSHLTWGLAMAFLVEN 560 (578)
Q Consensus 532 adn-pG~w~~HC----Hil~H~d~GM~~~~~V~~ 560 (578)
++. +|.|.+++ +...+...|+...+.+.+
T Consensus 124 ~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 124 ADQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp ECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred eCCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 986 99999999 667788899888777654
No 48
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.06 E-value=1.8e-05 Score=85.65 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=68.8
Q ss_pred eeecCCcee--eeEEEECCcCCCceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEEE
Q 039963 44 KPVKRLCRT--HNTVTVNGQFPGPTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTY 121 (578)
Q Consensus 44 ~~~~~~g~~--~~~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y 121 (578)
..+.++|.. ..+.+..-.+--+.|+|++||+|+++|+|.....=.+ ||+.+... ++ ..-+.||++.+.
T Consensus 532 ~~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI----~~dv~PG~t~sv 601 (635)
T PRK02888 532 SKVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV----NMEVAPQATASV 601 (635)
T ss_pred cceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc----cEEEcCCceEEE
Confidence 445556643 3455555555446899999999999999964322222 55544322 11 124789999999
Q ss_pred EEEecCCCcceeEeccccccc--ccceEEEEEecC
Q 039963 122 QFTIEGQEGTLWWHAHSRWIR--ATVYGAIIIYPR 154 (578)
Q Consensus 122 ~~~~~~~~Gt~~YH~h~~~~~--~Gl~G~liV~~~ 154 (578)
.|++ +++|.|||||...-.. .+|.|.|+|+++
T Consensus 602 tF~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 602 TFTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EEEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 9986 8999999999864322 499999999874
No 49
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.04 E-value=1.8e-05 Score=66.57 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=54.0
Q ss_pred ceEEEecCCEEEEEEEeCCCCceeEEecccccCCC-CCCCCCCcccccccCCCCeEEEEEEecCCCcceeEecccccccc
Q 039963 65 PTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGN-PWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA 143 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~-~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~ 143 (578)
+.|.+++||+| ++.|....++++.+-.-..... ........-....+.||+++++.|+ .+|+|.|+|. ....+
T Consensus 17 ~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~-PH~~~ 90 (99)
T PF00127_consen 17 SEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT-PHYEA 90 (99)
T ss_dssp SEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET-TTGGT
T ss_pred CEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC-CCccc
Confidence 69999999985 5677777777777633110000 0000000001234789999999995 7899999998 33445
Q ss_pred cceEEEEEe
Q 039963 144 TVYGAIIIY 152 (578)
Q Consensus 144 Gl~G~liV~ 152 (578)
||.|.|+|+
T Consensus 91 GM~G~i~V~ 99 (99)
T PF00127_consen 91 GMVGTIIVE 99 (99)
T ss_dssp TSEEEEEEE
T ss_pred CCEEEEEEC
Confidence 999999995
No 50
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.88 E-value=0.00025 Score=65.65 Aligned_cols=102 Identities=21% Similarity=0.199 Sum_probs=73.9
Q ss_pred eEEEECCcCCC-ceEEEecCCEEEEEEEeCCCCceeEEec--ccccC--CCCCCCCCC----c-----ccccccCCCCeE
Q 039963 54 NTVTVNGQFPG-PTLQVRDGDTLIITTINRAQYNITLHWH--GVNLK--GNPWADGPE----Y-----VTQCPIQPGRSY 119 (578)
Q Consensus 54 ~~~~~NG~~Pg-P~i~v~~Gd~v~v~l~N~l~~~~siH~H--G~~~~--~~~~~DG~~----~-----~~~~~i~PG~~~ 119 (578)
..+-|||..-| ++|.+..|-+|.|+|+|....+|++-.- +-.++ ..-..||.. | .....|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 47789998888 8999999999999999997766654332 22111 112245511 1 122367899999
Q ss_pred EEEEEecCCCcceeEecccccccc-cceEEEEEecCCC
Q 039963 120 TYQFTIEGQEGTLWWHAHSRWIRA-TVYGAIIIYPRIG 156 (578)
Q Consensus 120 ~y~~~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~ 156 (578)
.-.|. +-++|.|||-|-..++.+ ||++-|+|...-.
T Consensus 154 ~~~~~-~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 154 SGVYN-DLPAGYYWLVCGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred eEEEc-cCCCceEEEEccCCChhhcCCEEEEEEecCcc
Confidence 87774 368999999999988875 9999999987653
No 51
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.82 E-value=0.00021 Score=64.55 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=71.0
Q ss_pred EEECCcCCC-ceEEEecCCEEEEEEEeCCCCceeEEeccccc--C--CCCCCCCC----Cccc-----ccccCCCCeEEE
Q 039963 56 VTVNGQFPG-PTLQVRDGDTLIITTINRAQYNITLHWHGVNL--K--GNPWADGP----EYVT-----QCPIQPGRSYTY 121 (578)
Q Consensus 56 ~~~NG~~Pg-P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~--~--~~~~~DG~----~~~~-----~~~i~PG~~~~y 121 (578)
+-|||+..| ++|.+..|=+|.|+|+|....+|++-.---.. + +.-..||. .|.+ ...|.+|++..-
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg 154 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSG 154 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEE
Confidence 678899888 89999999999999999988887765511110 1 00113552 1111 134668888555
Q ss_pred EEEecCCCcceeEeccccccc-ccceEEEEEecCCC
Q 039963 122 QFTIEGQEGTLWWHAHSRWIR-ATVYGAIIIYPRIG 156 (578)
Q Consensus 122 ~~~~~~~~Gt~~YH~h~~~~~-~Gl~G~liV~~~~~ 156 (578)
.|. +-++|+|||-|-..++. +||+|-+||-..-.
T Consensus 155 ~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 155 WWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred Eec-cCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 554 57999999999988876 49999999976543
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.58 E-value=0.00027 Score=59.29 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=57.6
Q ss_pred eEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeC
Q 039963 454 KLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVAN 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ad 533 (578)
..+.++.|++|+|+ |.+ ...|-+.++...+..- .. ........+++.+.||+...+.|..
T Consensus 17 ~~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~-----~~---------~~~~~~~~~~~~~~pG~t~~~tF~~- 76 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAG-----VK---------ELAKSLSHKDLLNSPGESYEVTFST- 76 (99)
T ss_pred CEEEECCCCEEEEE--ECC---CCCceEEECCCCCccc-----hh---------hhcccccccccccCCCCEEEEEeCC-
Confidence 45789999999887 533 3567766654322110 00 0001123467888999998887765
Q ss_pred CceeEEEEeechhhHhccceEEEEEe
Q 039963 534 NPGIWFMHCHLDSHLTWGLAMAFLVE 559 (578)
Q Consensus 534 npG~w~~HCHil~H~d~GM~~~~~V~ 559 (578)
||.|.|||- .|...||.+.+.|+
T Consensus 77 -~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 -PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred -CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999884
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.43 E-value=0.00088 Score=57.60 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=49.5
Q ss_pred ceEEEecCCEEEEEEEeCCCCceeEEe-cccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEecccccccc
Q 039963 65 PTLQVRDGDTLIITTINRAQYNITLHW-HGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA 143 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~~~siH~-HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~ 143 (578)
..|.+++||+|+....|. ++++.+ .+.. .+|... ..-.+|+++++.| +.+|+|-|+|-. ...+
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~p-H~~~ 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTP-HYGM 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCC-CccC
Confidence 689999999987766654 466554 2211 122211 1124577777777 468999999983 2345
Q ss_pred cceEEEEEecCC
Q 039963 144 TVYGAIIIYPRI 155 (578)
Q Consensus 144 Gl~G~liV~~~~ 155 (578)
||.|.|+|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999998753
No 54
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.43 E-value=0.00085 Score=58.29 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=54.2
Q ss_pred ceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEeccccccccc
Q 039963 65 PTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRAT 144 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~G 144 (578)
-.|++++||+ |++.|.....|+++.-+... .+|.. .....+|+++++.|+ .+|+|-|+|-.|. ..|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~~-----~~g~~---~~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH~-~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGMD-----PEGSG---TLKAGINESFTHTFE---TPGEYTYYCTPHP-GMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCCC-----ccccc---ccccCCCcceEEEec---ccceEEEEeccCC-CCC
Confidence 4899999999 56789988899988766541 12221 123455688888884 4899999996542 249
Q ss_pred ceEEEEEec
Q 039963 145 VYGAIIIYP 153 (578)
Q Consensus 145 l~G~liV~~ 153 (578)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999964
No 55
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.37 E-value=0.0012 Score=56.57 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=50.5
Q ss_pred ceEEEecCCEEEEEEEeCC-CCceeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEecccccccc
Q 039963 65 PTLQVRDGDTLIITTINRA-QYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA 143 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~ 143 (578)
..|++++||+|+ ++|+. ..+|++..-+ ...|.-+ .....+|+++++.| .++|+|-|+|-.| ...
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f~s~-----~~~~~~G~t~s~Tf---~~~G~Y~Y~C~pH-~~~ 106 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDLDES-----ERVSEEGTTYEHTF---EEPGIYLYVCVPH-EAL 106 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----CCCcccc-----ccccCCCCEEEEEe---cCCcEEEEEccCC-CCC
Confidence 689999999976 66543 4677776421 1111101 11357899999999 3689999999854 234
Q ss_pred cceEEEEEe
Q 039963 144 TVYGAIIIY 152 (578)
Q Consensus 144 Gl~G~liV~ 152 (578)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 999999984
No 56
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.17 E-value=0.0015 Score=54.82 Aligned_cols=83 Identities=25% Similarity=0.454 Sum_probs=55.3
Q ss_pred eEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeC
Q 039963 454 KLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVAN 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ad 533 (578)
..+.++.|++|.|+..+ ...|.+.+ ...+ +....+.... +..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~-----~~~Hnv~~-------~~~~---~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNND-----SMPHNVVF-------VADG---MPAGADSDYV----PPGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEES-----SSSBEEEE-------ETTS---SHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECC-----CCCceEEE-------eccc---cccccccccc----CccccceecCCCCEEEEEeC--
Confidence 46889999999988764 23454433 3211 1000000000 01116777889999888887
Q ss_pred CceeEEEEeechhhHhccceEEEEEe
Q 039963 534 NPGIWFMHCHLDSHLTWGLAMAFLVE 559 (578)
Q Consensus 534 npG~w~~HCHil~H~d~GM~~~~~V~ 559 (578)
.+|.|.|+|- . |...||-+.+.|+
T Consensus 76 ~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 8999999999 5 9999999999984
No 57
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.16 E-value=0.002 Score=56.44 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=47.5
Q ss_pred eEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeC
Q 039963 454 KLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVAN 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ad 533 (578)
..++++.|+.|+|++.|.+ ...|.+-++++. -...|+||+..+++|+++
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~g----------------------------is~~I~pGet~TitF~ad 109 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKS---PISEGFSIDAYG----------------------------ISEVIKAGETKTISFKAD 109 (135)
T ss_pred CEEEECCCCEEEEEEEeCC---CCccceEECCCC----------------------------cceEECCCCeEEEEEECC
Confidence 4578999999999999965 456665555431 134678899999999999
Q ss_pred CceeEEEEeec
Q 039963 534 NPGIWFMHCHL 544 (578)
Q Consensus 534 npG~w~~HCHi 544 (578)
.||.|-|||-+
T Consensus 110 KpG~Y~y~C~~ 120 (135)
T TIGR03096 110 KAGAFTIWCQL 120 (135)
T ss_pred CCEEEEEeCCC
Confidence 99999999964
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.67 E-value=0.0073 Score=65.96 Aligned_cols=79 Identities=19% Similarity=0.369 Sum_probs=60.0
Q ss_pred eEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeC
Q 039963 454 KLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVAN 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ad 533 (578)
..+.++.|+.|++++.|.....+..|.|-+-++.. -..+.||....+.|+++
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------------------~~dv~PG~t~svtF~ad 606 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------------------NMEVAPQATASVTFTAD 606 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceeecccCc----------------------------cEEEcCCceEEEEEEcC
Confidence 34779999999999999654346778777754422 13456889999999999
Q ss_pred CceeEEEEeechhhH-hccceEEEEEec
Q 039963 534 NPGIWFMHCHLDSHL-TWGLAMAFLVEN 560 (578)
Q Consensus 534 npG~w~~HCHil~H~-d~GM~~~~~V~~ 560 (578)
.||.|.+||...-|. +.+|.+.+.|++
T Consensus 607 kPGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 607 KPGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CCEEEEEECCcccccCcccceEEEEEEe
Confidence 999999999884433 348999998854
No 59
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.49 E-value=0.012 Score=49.86 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=42.2
Q ss_pred eEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEee
Q 039963 218 VRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARA 295 (578)
Q Consensus 218 ~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~ 295 (578)
..+++++|++++|.+.|.+.. .|.+.+.+. .....|.||++..+.|... .+|+|.+.|..
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~-~h~~~i~~~----------------~~~~~l~~g~~~~~~f~~~-~~G~y~~~C~~ 94 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSR-PHEFVIPDL----------------GISKVLPPGETATVTFTPL-KPGEYEFYCTM 94 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS--EEEEEGGG----------------TEEEEE-TT-EEEEEEEE--S-EEEEEB-SS
T ss_pred CEEEEcCCCeEEEEEEECCCC-cEEEEECCC----------------ceEEEECCCCEEEEEEcCC-CCEEEEEEcCC
Confidence 589999999999999999844 366666651 1236788999999999877 78999999984
No 60
>PRK02710 plastocyanin; Provisional
Probab=96.03 E-value=0.027 Score=48.89 Aligned_cols=73 Identities=21% Similarity=0.384 Sum_probs=51.3
Q ss_pred eEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeC
Q 039963 454 KLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVAN 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ad 533 (578)
..+.++.|++|+|+ |.+ ...|.+.+.+.. .+ ...-..+.+|....+.|..
T Consensus 47 ~~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~---------~~---------------~~~~~~~~pg~t~~~tF~~- 96 (119)
T PRK02710 47 STLTIKAGDTVKWV--NNK---LAPHNAVFDGAK---------EL---------------SHKDLAFAPGESWEETFSE- 96 (119)
T ss_pred CEEEEcCCCEEEEE--ECC---CCCceEEecCCc---------cc---------------cccccccCCCCEEEEEecC-
Confidence 35789999999886 432 356776543211 00 0112456788888877764
Q ss_pred CceeEEEEeechhhHhccceEEEEEe
Q 039963 534 NPGIWFMHCHLDSHLTWGLAMAFLVE 559 (578)
Q Consensus 534 npG~w~~HCHil~H~d~GM~~~~~V~ 559 (578)
||.|.|+|= .|...||-+.+.|+
T Consensus 97 -~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 -AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred -CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 89999999999983
No 61
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.76 E-value=0.047 Score=46.97 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=32.1
Q ss_pred CCcEEEEEEEeCCceeEEEEeechhhHhccceEEEEEecCcchhc
Q 039963 522 PGGWVAIRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENGDEELQ 566 (578)
Q Consensus 522 p~~~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~ 566 (578)
++.... ++++.+|.|-|+|= .|...||-+.+.|.+++-.++
T Consensus 54 ~g~~~~--~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~~n~~ 94 (116)
T TIGR02375 54 INEEYT--VTVTEEGVYGVKCT--PHYGMGMVALIQVGDPPANLD 94 (116)
T ss_pred CCCEEE--EEeCCCEEEEEEcC--CCccCCCEEEEEECCCCcCHH
Confidence 455544 45578999999998 999999999999998644343
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.35 E-value=0.24 Score=44.13 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=61.5
Q ss_pred CCCceEEEecCCEEEEEEEeCCCC--ceeE---------EecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCc
Q 039963 62 FPGPTLQVRDGDTLIITTINRAQY--NITL---------HWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEG 130 (578)
Q Consensus 62 ~PgP~i~v~~Gd~v~v~l~N~l~~--~~si---------H~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~G 130 (578)
+++-.+.++.|++++..+.|.-.- ..++ --|..... .+++- .....-+.||++-+..|.. ..+|
T Consensus 60 f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~---Dme~d-~~~~v~L~PG~s~elvv~f-t~~g 134 (158)
T COG4454 60 FKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILAD---DMEHD-DPNTVTLAPGKSGELVVVF-TGAG 134 (158)
T ss_pred cCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCC---ccccC-CcceeEeCCCCcEEEEEEe-cCCc
Confidence 566789999999999999997531 1111 11222221 13331 1222358999999999986 7899
Q ss_pred ceeEecccccccc-cceEEEEEec
Q 039963 131 TLWWHAHSRWIRA-TVYGAIIIYP 153 (578)
Q Consensus 131 t~~YH~h~~~~~~-Gl~G~liV~~ 153 (578)
.|-.-|-..++++ ||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999995 9999998864
No 63
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=95.01 E-value=0.21 Score=51.78 Aligned_cols=75 Identities=21% Similarity=0.183 Sum_probs=52.0
Q ss_pred ceEEEecCCEEEEEEEeCCCCceeEEec-ccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEecccccccc
Q 039963 65 PTLQVRDGDTLIITTINRAQYNITLHWH-GVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRA 143 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~~~siH~H-G~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~ 143 (578)
..+.+..|+ +++.++|....++....- |..+.. ..-.|.||.+.++.+++ .+|+|-|+|-. ..
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~~~~Efe~~~~~~vv~----------e~EnIaPG~s~~l~~~L--~pGtY~~~C~~---~~ 107 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQKALEWEILKGVMVVE----------ERENIAPGFSQKMTANL--QPGEYDMTCGL---LT 107 (375)
T ss_pred CceeeCCCC-EEEEEEeCCCCcceEEeeccccccc----------cccccCCCCceEEEEec--CCceEEeecCc---CC
Confidence 689999996 899999998766443221 110000 01259999999988765 69999999933 23
Q ss_pred cceEEEEEecCC
Q 039963 144 TVYGAIIIYPRI 155 (578)
Q Consensus 144 Gl~G~liV~~~~ 155 (578)
.+.|.|+|....
T Consensus 108 ~~~g~l~Vtg~~ 119 (375)
T PRK10378 108 NPKGKLIVKGEA 119 (375)
T ss_pred CCCceEEEeCCC
Confidence 458999998643
No 64
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=94.92 E-value=0.13 Score=44.36 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=55.0
Q ss_pred ceEEEecC-CEEEEEEEeCCCCceeEEecccccCCCCCC-----C----C-----CCc------ccccccCCCCeEEEEE
Q 039963 65 PTLQVRDG-DTLIITTINRAQYNITLHWHGVNLKGNPWA-----D----G-----PEY------VTQCPIQPGRSYTYQF 123 (578)
Q Consensus 65 P~i~v~~G-d~v~v~l~N~l~~~~siH~HG~~~~~~~~~-----D----G-----~~~------~~~~~i~PG~~~~y~~ 123 (578)
..|.|+.+ .+|+|+|+|....|-..--|-+-+....-+ | | ++. ..-.-|.|||+-+..|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 68999985 799999999854442222221110000000 1 1 110 0012478999999999
Q ss_pred EecC-CCcc-eeEecccccccccceEEEE
Q 039963 124 TIEG-QEGT-LWWHAHSRWIRATVYGAII 150 (578)
Q Consensus 124 ~~~~-~~Gt-~~YH~h~~~~~~Gl~G~li 150 (578)
+++. ++|+ |-|-|-..++.+.|.|.|.
T Consensus 96 ~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred ECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 8743 6786 9999999999889999875
No 65
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.44 E-value=0.28 Score=42.62 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=49.5
Q ss_pred ceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEeccccc--cc
Q 039963 65 PTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRW--IR 142 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~--~~ 142 (578)
+.|.+..|+.|++++++. +.-|++..-++. + +.-+.||+.....|+. +++|+|++.|..-- ..
T Consensus 46 ~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~------------~-k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSE-DVIHSFWIPELG------------I-KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SEEEEETTSEEEEEEEES-SS-EEEEETTCT------------E-EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred ceecccccceEeEEEEcC-CccccccccccC------------c-ccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 689999999999999996 333333332221 1 1247899999999987 89999999998532 22
Q ss_pred ccceEEEEE
Q 039963 143 ATVYGAIII 151 (578)
Q Consensus 143 ~Gl~G~liV 151 (578)
+-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 367777665
No 66
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.26 E-value=0.27 Score=39.56 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=45.4
Q ss_pred eEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeC
Q 039963 454 KLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVAN 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ad 533 (578)
..+.++.|++|.|+ |.+ ...|-.+.+.-.+ +..+ +. ...+.++.... ++++
T Consensus 11 ~~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~~--------------~~-~~~~~~g~~~~--~tf~ 61 (83)
T TIGR02657 11 PELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEAA--------------LK-GPMMKKEQAYS--LTFT 61 (83)
T ss_pred CEEEECCCCEEEEE--ECC---CCCccEEecCCCC-------cccc--------------cc-ccccCCCCEEE--EECC
Confidence 45789999999984 533 3568877643211 0000 11 11234555554 4557
Q ss_pred CceeEEEEeechhhHhccceEEEEEe
Q 039963 534 NPGIWFMHCHLDSHLTWGLAMAFLVE 559 (578)
Q Consensus 534 npG~w~~HCHil~H~d~GM~~~~~V~ 559 (578)
.||.|.|||=+ |- +|-+.+.|+
T Consensus 62 ~~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 62 EAGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CCEEEEEEcCC--CC--CCeEEEEEC
Confidence 89999999976 54 599988874
No 67
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.12 E-value=0.09 Score=46.84 Aligned_cols=93 Identities=16% Similarity=0.258 Sum_probs=62.1
Q ss_pred EEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeCCc
Q 039963 456 YKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANNP 535 (578)
Q Consensus 456 ~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~adnp 535 (578)
+.++-|++++.++.|.+. ..|=|=+- ++.... +.+.-.. ...-..---..++.|.||....+-+.+.++
T Consensus 65 ~~v~aG~tv~~v~~n~~e---l~hef~~~---~~~~~~--~~~~~~~---~~~Dme~d~~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 65 FEVKAGETVRFVLKNEGE---LKHEFTMD---APDKNL--EHVTHMI---LADDMEHDDPNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccccCCcEEeeeecCccc---ceEEEecc---Cccccc--hhHHHhh---hCCccccCCcceeEeCCCCcEEEEEEecCC
Confidence 567889999999999652 23333222 111110 0000000 000001123578999999999999999999
Q ss_pred eeEEEEeechhhHhccceEEEEEe
Q 039963 536 GIWFMHCHLDSHLTWGLAMAFLVE 559 (578)
Q Consensus 536 G~w~~HCHil~H~d~GM~~~~~V~ 559 (578)
|.|-|-|-|-+|-+.||-+-|+|.
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeC
Confidence 999999999999999999999984
No 68
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=93.30 E-value=0.45 Score=40.87 Aligned_cols=74 Identities=24% Similarity=0.430 Sum_probs=48.6
Q ss_pred eEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeC
Q 039963 454 KLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVAN 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ad 533 (578)
..++++.|++|.|+..+. ...|-. .+.+.+.|+. ......+|....+.| +
T Consensus 42 ~~ltV~~GdTVtw~~~~d----~~~HnV---------~s~~~~~f~s---------------~~~~~~~G~t~s~Tf--~ 91 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTGE----GGGHNV---------VSDGDGDLDE---------------SERVSEEGTTYEHTF--E 91 (115)
T ss_pred CEEEECCCCEEEEEECCC----CCCEEE---------EECCCCCccc---------------cccccCCCCEEEEEe--c
Confidence 357899999999986542 234443 2222223321 111234566666655 6
Q ss_pred CceeEEEEeechhhHhccceEEEEEe
Q 039963 534 NPGIWFMHCHLDSHLTWGLAMAFLVE 559 (578)
Q Consensus 534 npG~w~~HCHil~H~d~GM~~~~~V~ 559 (578)
.||.|-|+|= .|...||-+.+.|+
T Consensus 92 ~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 92 EPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 8999999997 89999999999984
No 69
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=91.60 E-value=1.6 Score=41.70 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=55.8
Q ss_pred ceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEecccc--ccc
Q 039963 65 PTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR--WIR 142 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~--~~~ 142 (578)
..|.+..|+.|++++++.. .+ ||+..+.- |+ +.-+-||...+..|++ +++|+|...|..- ...
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 5899999999999999863 22 55554331 11 2346799999999976 8999999998752 223
Q ss_pred ccceEEEEEecCC
Q 039963 143 ATVYGAIIIYPRI 155 (578)
Q Consensus 143 ~Gl~G~liV~~~~ 155 (578)
+.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 5899999988754
No 70
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=91.57 E-value=2 Score=37.24 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=53.8
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+.+.++.|+.|++.+.+. +..|.|.+-+...++ .+.||....+.|++
T Consensus 45 ~~~l~lp~g~~v~~~ltS~----DViHsf~ip~~~~k~----------------------------d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE----DVIHSFWIPELGIKM----------------------------DAIPGRTNSVTFTP 92 (120)
T ss_dssp SSEEEEETTSEEEEEEEES----SS-EEEEETTCTEEE----------------------------EEBTTCEEEEEEEE
T ss_pred cceecccccceEeEEEEcC----CccccccccccCccc----------------------------ccccccceeeeeee
Confidence 4578999999999999995 467888776554432 34588888999999
Q ss_pred CCceeEEEEeechhhH-hccceEEEEE
Q 039963 533 NNPGIWFMHCHLDSHL-TWGLAMAFLV 558 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GM~~~~~V 558 (578)
+.||.|-..|...=.. +.-|.+.++|
T Consensus 93 ~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 93 DKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 9999999999876633 4555555554
No 71
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=91.40 E-value=2.4 Score=39.62 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=60.3
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCC---CCCCCCC--CCCCCcceeEEeCCCcEEE
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPS---TDTPKFN--LIDPPRRNTIGMPPGGWVA 527 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~---~~~~~~~--~~~p~~rDTv~vpp~~~~~ 527 (578)
...+.++-|-.|++.|.|.+ ... |.|-|+..+....... .+.+... -..+.--..--|.+|....
T Consensus 85 ~m~i~VPAGw~V~i~f~N~~---~l~-------Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~ 154 (196)
T PF06525_consen 85 QMTIYVPAGWNVQITFTNQE---SLP-------HNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSAS 154 (196)
T ss_pred cEEEEEcCCCEEEEEEEcCC---CCC-------eeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceee
Confidence 35678899999999999965 344 4566775432111100 0000000 0000000011233566665
Q ss_pred EEEEeCCceeEEEEeechhhHhccceEEEEEecC
Q 039963 528 IRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENG 561 (578)
Q Consensus 528 irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 561 (578)
.-+..-.||.|.+=|-+.-|...||=..|+|.+.
T Consensus 155 ~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 155 GVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred EEEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 5665557999999999999999999999999765
No 72
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.39 E-value=1.6 Score=41.59 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=56.4
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+.+.++.|+.|++.+.+.+ ..|.|.+-+... ..| +-||....+.|++
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D----V~Hsf~ip~~~~-------------------------k~d---a~PG~~~~~~~~~ 163 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD----VIHSFWVPELGG-------------------------KID---AIPGQYNALWFNA 163 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc----hhhcccccccCc-------------------------eEE---ecCCcEEEEEEEe
Confidence 35688999999999999854 456555533211 123 4478888999999
Q ss_pred CCceeEEEEeechhhH-hccceEEEEEecC
Q 039963 533 NNPGIWFMHCHLDSHL-TWGLAMAFLVENG 561 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
+.||.|...|-..-.. +..|...++|.+.
T Consensus 164 ~~~G~y~~~c~e~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 164 DEPGVYYGYCAELCGAGHSLMLFKVVVVER 193 (201)
T ss_pred CCCEEEEEEehhhCCcCccCCeEEEEEECH
Confidence 9999999999884422 4788888888764
No 73
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=89.04 E-value=3.4 Score=38.01 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=60.2
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccC-CCCCC--CCCCCCCCC--CCCcceeEEeCCCcEEE
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFG-NFNPS--TDTPKFNLI--DPPRRNTIGMPPGGWVA 527 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g-~~~~~--~~~~~~~~~--~p~~rDTv~vpp~~~~~ 527 (578)
...+.++-|-.|.+.|.|.. ... |.+-|+-.+.. +..+. .+.+..+.. .+..-..=-+..|....
T Consensus 84 ~mtIyiPaGw~V~V~f~N~e---~~p-------Hnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~s 153 (195)
T TIGR03094 84 AMTIYLPAGWNVYVTFTNYE---SLP-------HNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRS 153 (195)
T ss_pred ceEEEEeCCCEEEEEEEcCC---CCC-------ccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeE
Confidence 46788999999999999965 334 34455543321 10000 011111100 00000111123556666
Q ss_pred EEEEeCCceeEEEEeechhhHhccceEEEEEecC
Q 039963 528 IRFVANNPGIWFMHCHLDSHLTWGLAMAFLVENG 561 (578)
Q Consensus 528 irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 561 (578)
+.+....||.|.+=|-+.-|.+.||-+.+.|.+.
T Consensus 154 g~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 154 GWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 7777779999999999999999999999998654
No 74
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=88.89 E-value=1.9 Score=37.69 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=47.7
Q ss_pred EEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeCC
Q 039963 455 LYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVANN 534 (578)
Q Consensus 455 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~adn 534 (578)
.++++.|++|+|+... ...|-.+. .+.. +|...+++...++.....-|. .
T Consensus 55 ~v~v~pGDTVtw~~~d-----~~~Hnv~~---------~~~~--------------~~~g~~~~~~~~~~s~~~Tfe--~ 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTD-----SVGHNVTA---------VGGM--------------DPEGSGTLKAGINESFTHTFE--T 104 (128)
T ss_pred EEEECCCCEEEEEECC-----CCCceEEE---------eCCC--------------CcccccccccCCCcceEEEec--c
Confidence 4788999999998764 22454332 2111 111223333334455555554 5
Q ss_pred ceeEEEEeechhhHhccceEEEEEec
Q 039963 535 PGIWFMHCHLDSHLTWGLAMAFLVEN 560 (578)
Q Consensus 535 pG~w~~HCHil~H~d~GM~~~~~V~~ 560 (578)
||.|.|.| ..|.-+||-+.+.|++
T Consensus 105 ~G~Y~Y~C--~PH~~~gM~G~IvV~~ 128 (128)
T COG3794 105 PGEYTYYC--TPHPGMGMKGKIVVGE 128 (128)
T ss_pred cceEEEEe--ccCCCCCcEEEEEeCC
Confidence 99999999 5799999999999864
No 75
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=88.41 E-value=6 Score=31.74 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=37.3
Q ss_pred EEEEEEEEcCCCCcEEEEEe-Cce--eEEEeecCccc-c-------eeEeeEEEEccCceEEEEEEeCCC---CceeEEE
Q 039963 227 TVLLRIINAAMNQELFFGVA-NHN--LTVVGVDTSYT-K-------AFSTSVIMIAPGQTTNVLLTADQP---PARYYMA 292 (578)
Q Consensus 227 ~~rlrliN~~~~~~~~~~l~-gh~--~~via~DG~~~-~-------p~~~d~v~l~pger~dv~v~~~~~---~G~y~i~ 292 (578)
.+.|.+.|.+ ...+.|.+. |+. |.|...+|..+ + -+......|.|||...+..+.+.. ||.|.+.
T Consensus 3 ~~~l~v~N~s-~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNS-DEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-S-SS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCC-CCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 3567788888 555666665 554 44444566655 1 234568999999999999888763 6999875
Q ss_pred E
Q 039963 293 A 293 (578)
Q Consensus 293 ~ 293 (578)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 3
No 76
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=85.94 E-value=4.3 Score=39.92 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=56.2
Q ss_pred ceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEeccccc--cc
Q 039963 65 PTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRW--IR 142 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~--~~ 142 (578)
..|.+..|.+|++.++-. +.- ||+..+.. + .+.-.-||...+..+++ +++|+|.-+|+.-- ..
T Consensus 137 n~l~lPv~~~V~f~ltS~-DVi-----HsF~IP~l-------~-~k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVI-----HSFWIPQL-------G-GKIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhc-----eeEEecCC-------C-ceeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 899999999999998876 333 34433322 0 12246789999999976 89999999998532 22
Q ss_pred ccceEEEEEecCCC
Q 039963 143 ATVYGAIIIYPRIG 156 (578)
Q Consensus 143 ~Gl~G~liV~~~~~ 156 (578)
+.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 48999999998764
No 77
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=79.80 E-value=7.6 Score=38.17 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=56.4
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+-+.++.|+.|++.+... +..|.|.+-+-.+ -+..-||-.....+++
T Consensus 136 ~n~l~lPv~~~V~f~ltS~----DViHsF~IP~l~~----------------------------k~d~iPG~~~~~~~~~ 183 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA----DVIHSFWIPQLGG----------------------------KIDAIPGMTTELWLTA 183 (247)
T ss_pred cceEEEeCCCeEEEEEEec----hhceeEEecCCCc----------------------------eeeecCCceEEEEEec
Confidence 4568899999999999874 3556554443322 2233477778899999
Q ss_pred CCceeEEEEeechhhH-hccceEEEEEecCcc
Q 039963 533 NNPGIWFMHCHLDSHL-TWGLAMAFLVENGDE 563 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GM~~~~~V~~~~~ 563 (578)
+.||.|-.+|+..-=. +..|-..++|.+..+
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 9999999999988744 456666777765433
No 78
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=76.37 E-value=3.1 Score=43.53 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=52.1
Q ss_pred ceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEecccc--ccc
Q 039963 65 PTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSR--WIR 142 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~--~~~ 142 (578)
-++.|++||.|++.++|-....-.+|---+.+. |+. .-+.|-++-.|.|.. +.+|.+||.|--. ...
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~thgfv~p~~------~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLTHGFVIPNY------GVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceeccccceeeeccC------ceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 579999999999999998766655544333221 221 247888888999965 8999999987432 222
Q ss_pred ccceEEEEEe
Q 039963 143 ATVYGAIIIY 152 (578)
Q Consensus 143 ~Gl~G~liV~ 152 (578)
+-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 3556666664
No 79
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=75.90 E-value=7.1 Score=31.30 Aligned_cols=60 Identities=27% Similarity=0.491 Sum_probs=29.9
Q ss_pred EEEEEEeCCCCceeEEecccc-----cC---C---CCCCCCCCc---ccccccCCCCeEEEEEEecCC---CcceeE
Q 039963 75 LIITTINRAQYNITLHWHGVN-----LK---G---NPWADGPEY---VTQCPIQPGRSYTYQFTIEGQ---EGTLWW 134 (578)
Q Consensus 75 v~v~l~N~l~~~~siH~HG~~-----~~---~---~~~~DG~~~---~~~~~i~PG~~~~y~~~~~~~---~Gt~~Y 134 (578)
+.++++|..+.+.++.+..-. +. + -.|++|-.. +....|.||++.+|++..+.. +|+|..
T Consensus 4 ~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 4 FTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 455555555555555544321 00 0 135666433 334569999999999998543 688753
No 80
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=71.23 E-value=32 Score=27.83 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=37.7
Q ss_pred CceEEEe---cCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEe
Q 039963 64 GPTLQVR---DGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTI 125 (578)
Q Consensus 64 gP~i~v~---~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~ 125 (578)
.|.+.++ ....|+|+|.|....+..+........ .+ ...+..|.||++.+..|.+
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~--~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GG--GPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CC--CCEEEEECCCCEEEEEEee
Confidence 4555554 235899999999888777766553221 11 1234579999999999987
No 81
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=68.67 E-value=6.7 Score=30.91 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=27.2
Q ss_pred ecCC--EEEEEEEeCCCCc---eeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEec----CCCccee
Q 039963 70 RDGD--TLIITTINRAQYN---ITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIE----GQEGTLW 133 (578)
Q Consensus 70 ~~Gd--~v~v~l~N~l~~~---~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~----~~~Gt~~ 133 (578)
++|+ ++.++|+|....+ ..+..- .+.+|.......+-..|.||++.+..|++. -.+|+|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~----~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS----LPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE------TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe----CCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 4555 4567788987543 222221 245566222222222699999999999882 2357753
No 82
>COG1470 Predicted membrane protein [Function unknown]
Probab=67.45 E-value=1.8e+02 Score=31.19 Aligned_cols=180 Identities=19% Similarity=0.269 Sum_probs=100.0
Q ss_pred EEEecCCE--EEEEEEeCCC--CceeEEecccccC-CCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEecccccc
Q 039963 67 LQVRDGDT--LIITTINRAQ--YNITLHWHGVNLK-GNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWI 141 (578)
Q Consensus 67 i~v~~Gd~--v~v~l~N~l~--~~~siH~HG~~~~-~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~ 141 (578)
+.+.++++ +.|++.|.-. +...+..-|+.-. ...+-+|--.++...+.|||+.+....+... ...
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps----------~na 347 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPS----------LNA 347 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecC----------CCC
Confidence 44455554 6778888763 4555666555310 1122366656777789999999998887110 001
Q ss_pred cccceEEEEEecCCCCCCCCCCCCCceeeeecccccCChHHHHHHHHhcCCCCCCCceEEEcCcCCCCCCCCCCceeEEE
Q 039963 142 RATVYGAIIIYPRIGSSYPFPVPNREIPILLGEWWDKNPMDVLMQAIFTGAAPNVSDAFTINGQPGDLYRCSRRETVRFQ 221 (578)
Q Consensus 142 ~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~l~ 221 (578)
+.|.|-..|+-...+ ...+|.++-+..- |.. ....-+-||. ..++
T Consensus 348 ~pG~Ynv~I~A~s~s------~v~~e~~lki~~~---------------g~~--~~~v~l~~g~------------~~lt 392 (513)
T COG1470 348 TPGTYNVTITASSSS------GVTRELPLKIKNT---------------GSY--NELVKLDNGP------------YRLT 392 (513)
T ss_pred CCCceeEEEEEeccc------cceeeeeEEEEec---------------ccc--ceeEEccCCc------------EEEE
Confidence 124445555543321 1234544444320 000 0112233443 3588
Q ss_pred EecC--cEEEEEEEEcCCCC--cEEEEEeCceeEEEeecCcccceeEeeEEEEccCce--EEEEEEeCC--CCceeEEEE
Q 039963 222 VEAG--ETVLLRIINAAMNQ--ELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQT--TNVLLTADQ--PPARYYMAA 293 (578)
Q Consensus 222 v~~G--~~~rlrliN~~~~~--~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger--~dv~v~~~~--~~G~y~i~~ 293 (578)
+.+| +.++++|-|.|... .+.+.+++-+-|-+.+|+... + .|.||+| +++.++++. .+|+|.+..
T Consensus 393 ~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY~i~i 465 (513)
T COG1470 393 ITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDYRITI 465 (513)
T ss_pred ecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcEEEEE
Confidence 8888 46799999999432 245556655556667766532 2 2445665 555555553 458999988
Q ss_pred eeccc
Q 039963 294 RAYNS 298 (578)
Q Consensus 294 ~~~~~ 298 (578)
....|
T Consensus 466 ~~ksD 470 (513)
T COG1470 466 TAKSD 470 (513)
T ss_pred EEeec
Confidence 86554
No 83
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=67.27 E-value=22 Score=29.18 Aligned_cols=71 Identities=11% Similarity=0.022 Sum_probs=42.0
Q ss_pred EEecCcEEEEEEE--EcCCCCcEEEEEeCceeEEEeecCcccceeEeeEE-EEccCceEEEEEEeCCCC--ceeEEEEee
Q 039963 221 QVEAGETVLLRII--NAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVI-MIAPGQTTNVLLTADQPP--ARYYMAARA 295 (578)
Q Consensus 221 ~v~~G~~~rlrli--N~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v-~l~pger~dv~v~~~~~~--G~y~i~~~~ 295 (578)
.-+|||++.+|++ +... ......-....+.|...+|..+ ..... .......++..+..++.+ |.|.|....
T Consensus 10 iYrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v---~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEV---FRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEE---EEEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEE---EEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 4689999999999 6652 1111111123466666666544 22222 346788888888887643 999999886
No 84
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=65.27 E-value=1.1e+02 Score=29.63 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=51.5
Q ss_pred ceEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEeccccc--cc
Q 039963 65 PTLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRW--IR 142 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~--~~ 142 (578)
..|.+..|..|++.+++.+ .| |+...+.- | +. .-.-||......|++ +++|+|+-.|..-- ..
T Consensus 140 n~l~lP~~~~v~~~~ts~D----Vi--Hsf~ip~~----~---~k-~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~H 204 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD----VI--HSWTVPSL----G---VK-VDAIPGRLNQLSFEP-KRPGVFYGQCSEICGANH 204 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc----cc--cceecccc----C---ce-eECCCCcceeEEEEe-CCCEEEEEECccccCcCc
Confidence 5799999999999999963 22 45544322 1 11 235689998888876 88999987776422 12
Q ss_pred ccceEEEEEecCC
Q 039963 143 ATVYGAIIIYPRI 155 (578)
Q Consensus 143 ~Gl~G~liV~~~~ 155 (578)
+.|.+.++|.+++
T Consensus 205 ~~M~~~v~v~~~~ 217 (228)
T MTH00140 205 SFMPIVVEAVPLE 217 (228)
T ss_pred CCCeEEEEEECHH
Confidence 3677777776643
No 85
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=65.12 E-value=31 Score=33.58 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=55.9
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+.+.++.|+.|++.+.+. +..|.|.+-....+ +..-||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts~----DViHsf~ip~~~~k----------------------------~d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA----DVIHSWTVPSLGVK----------------------------VDAIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC----ccccceeccccCce----------------------------eECCCCcceeEEEEe
Confidence 4567899999999999985 45566555432221 223377778899999
Q ss_pred CCceeEEEEeechhhH-hccceEEEEEecC
Q 039963 533 NNPGIWFMHCHLDSHL-TWGLAMAFLVENG 561 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
+.||.+...|.-+-.. +..|-..++|.+.
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 9999999999988765 5667777777653
No 86
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=64.92 E-value=51 Score=31.15 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=55.5
Q ss_pred eEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeC
Q 039963 454 KLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVAN 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ad 533 (578)
+...++.|+.+++.+... +..|.|.+-.... .+|. -||-...+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~-------------------------k~d~---~PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNL-------------------------KMDA---IPGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecC----ccccceeccccCc-------------------------eeec---CCCceEEEEEEcC
Confidence 457889999999999874 4667766653322 1233 3788888999999
Q ss_pred CceeEEEEeechhhH-hccceEEEEEecC
Q 039963 534 NPGIWFMHCHLDSHL-TWGLAMAFLVENG 561 (578)
Q Consensus 534 npG~w~~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
.||.|-.-|.-.-=. +..|-..++|.++
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 999999999877644 5667777776553
No 87
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=62.91 E-value=51 Score=33.98 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=33.9
Q ss_pred cCCCceEEEecCCEEEEEEEeCCCCc--------eeEEeccc---ccCCCCC-----CCCCCcccccccCCCCeEEEEEE
Q 039963 61 QFPGPTLQVRDGDTLIITTINRAQYN--------ITLHWHGV---NLKGNPW-----ADGPEYVTQCPIQPGRSYTYQFT 124 (578)
Q Consensus 61 ~~PgP~i~v~~Gd~v~v~l~N~l~~~--------~siH~HG~---~~~~~~~-----~DG~~~~~~~~i~PG~~~~y~~~ 124 (578)
.+||-.++ +.+.++|+.+.+ -+++|-.- ......+ .+|..-..+.||+|||+.+...+
T Consensus 278 ~VPGR~l~------~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~ 351 (399)
T TIGR03079 278 DVPGRALR------VTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKME 351 (399)
T ss_pred ecCCcEEE------EEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEE
Confidence 37777774 457777877543 23444322 1111112 22443333568999999999998
Q ss_pred e
Q 039963 125 I 125 (578)
Q Consensus 125 ~ 125 (578)
+
T Consensus 352 a 352 (399)
T TIGR03079 352 A 352 (399)
T ss_pred E
Confidence 7
No 88
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=60.91 E-value=43 Score=26.19 Aligned_cols=66 Identities=24% Similarity=0.342 Sum_probs=31.2
Q ss_pred ecCcE--EEEEEEEcCCCCcEEEEEeCceeEEEeecCccc--ceeEeeEEEEccCceEEEEEEeC--C--CCceeEEEEe
Q 039963 223 EAGET--VLLRIINAAMNQELFFGVANHNLTVVGVDTSYT--KAFSTSVIMIAPGQTTNVLLTAD--Q--PPARYYMAAR 294 (578)
Q Consensus 223 ~~G~~--~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~--~p~~~d~v~l~pger~dv~v~~~--~--~~G~y~i~~~ 294 (578)
.+|+. +.+.+.|.+.... .+..+.+-.-+|-.+ .+.... .|.||++..+.++.. . .+|+|.|...
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~-----~~v~~~l~~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~ 74 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPL-----TNVSLSLSLPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVTVT 74 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-B-----SS-EEEEE--TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCce-----eeEEEEEeCCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEEEE
Confidence 45655 4677888884332 122233333444432 333333 889998866666553 2 4699998765
Q ss_pred e
Q 039963 295 A 295 (578)
Q Consensus 295 ~ 295 (578)
.
T Consensus 75 a 75 (78)
T PF10633_consen 75 A 75 (78)
T ss_dssp E
T ss_pred E
Confidence 3
No 89
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=58.84 E-value=53 Score=29.95 Aligned_cols=76 Identities=13% Similarity=0.161 Sum_probs=52.5
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+.+.++.|..|++.+... +..|.|.+-.... ..|.+ ||-...+.|.+
T Consensus 72 Dn~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgv-------------------------K~Dav---PGr~n~l~~~~ 119 (162)
T PTZ00047 72 DKRLTLPTRTHIRFLITAT----DVIHSWSVPSLGI-------------------------KADAI---PGRLHKINTFI 119 (162)
T ss_pred cCCEEEeCCCEEEEEEEeC----ccceeeeccccCc-------------------------eeecc---CCceEEEEEec
Confidence 3457789999999999874 4567666543322 12332 67777888999
Q ss_pred CCceeEEEEeechhhH-hccceEEEEEec
Q 039963 533 NNPGIWFMHCHLDSHL-TWGLAMAFLVEN 560 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 560 (578)
+.||.|...|.-+-=. +..|-..++|.+
T Consensus 120 ~~~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 120 LREGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CCCeEEEEEcchhcCcCccCceEEEEEeC
Confidence 9999999999876532 345666666654
No 90
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=56.57 E-value=45 Score=34.93 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=48.1
Q ss_pred eEEEcCcCCCCCCCCCCceeEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEE
Q 039963 199 AFTINGQPGDLYRCSRRETVRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNV 278 (578)
Q Consensus 199 ~~liNG~~~~~~~~~~~~~~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv 278 (578)
.++|+.... .+..+++++|+ ++|.+.|.+.. . +.|.++. |..+. ...=.|.||.+..+
T Consensus 33 ~Vti~d~~c--------~p~~~tVpAG~-~~f~V~N~~~~-~-------~Efe~~~--~~~vv---~e~EnIaPG~s~~l 90 (375)
T PRK10378 33 KVTVNDKQC--------EPMTLTVNAGK-TQFIIQNHSQK-A-------LEWEILK--GVMVV---EERENIAPGFSQKM 90 (375)
T ss_pred EEEEECCcc--------ccCceeeCCCC-EEEEEEeCCCC-c-------ceEEeec--ccccc---ccccccCCCCceEE
Confidence 466666432 33678999996 99999999843 3 3354442 22110 11238899988888
Q ss_pred EEEeCCCCceeEEEEee
Q 039963 279 LLTADQPPARYYMAARA 295 (578)
Q Consensus 279 ~v~~~~~~G~y~i~~~~ 295 (578)
.+.+ .||+|.+.|..
T Consensus 91 ~~~L--~pGtY~~~C~~ 105 (375)
T PRK10378 91 TANL--QPGEYDMTCGL 105 (375)
T ss_pred EEec--CCceEEeecCc
Confidence 7776 37999999953
No 91
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=55.00 E-value=63 Score=24.59 Aligned_cols=65 Identities=18% Similarity=0.330 Sum_probs=37.4
Q ss_pred eEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEe
Q 039963 218 VRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAAR 294 (578)
Q Consensus 218 ~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~ 294 (578)
..++++.|+++++.+-+.+. ...+.|...+|..+....... -..+..-.+.+.+. .+|+|+|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 56899999999988876664 233666666654332211111 01122233445555 6799999864
No 92
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=53.97 E-value=1.1e+02 Score=24.47 Aligned_cols=66 Identities=26% Similarity=0.330 Sum_probs=40.0
Q ss_pred EEecCcEE--EEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEE-EEccCceEEEEEEeCC-CCceeEEEEee
Q 039963 221 QVEAGETV--LLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVI-MIAPGQTTNVLLTADQ-PPARYYMAARA 295 (578)
Q Consensus 221 ~v~~G~~~--rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v-~l~pger~dv~v~~~~-~~G~y~i~~~~ 295 (578)
.+..|+.+ .+.+.|.|....-.+.+. +-.||..+ ....| .|.+|+...+.+.... .+|.|.+....
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 56677665 578889986554333333 23455443 44455 7899999888887753 57889888775
No 93
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=52.13 E-value=2.3e+02 Score=27.50 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=46.7
Q ss_pred eEEEecCCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEeccccc--ccc
Q 039963 66 TLQVRDGDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRW--IRA 143 (578)
Q Consensus 66 ~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~--~~~ 143 (578)
.|.+..|..|++.++-.+ .| |+...+.- | +.. -.-||......|.+ +++|+|+-.|..-- ..+
T Consensus 141 ~lvlP~~~~v~~~~tS~D----Vi--Hsf~ip~~----~---~k~-da~PG~~~~~~~~~-~~~G~~~g~C~e~CG~~H~ 205 (230)
T MTH00129 141 RMVVPVESPIRVLVSAED----VL--HSWAVPAL----G---VKM-DAVPGRLNQTAFIA-SRPGVFYGQCSEICGANHS 205 (230)
T ss_pred eEEEecCcEEEEEEEeCc----cc--cceecccc----C---Ccc-ccCCCceEEEEEEe-CCceEEEEEChhhcccccc
Confidence 577778888888776653 23 44443321 1 122 34589998888876 88999998887522 123
Q ss_pred cceEEEEEecC
Q 039963 144 TVYGAIIIYPR 154 (578)
Q Consensus 144 Gl~G~liV~~~ 154 (578)
.|-+.+.|.++
T Consensus 206 ~M~~~v~vv~~ 216 (230)
T MTH00129 206 FMPIVVEAVPL 216 (230)
T ss_pred CCcEEEEEECH
Confidence 66666666554
No 94
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=50.38 E-value=41 Score=32.66 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=42.7
Q ss_pred eEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEeec
Q 039963 218 VRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARAY 296 (578)
Q Consensus 218 ~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~ 296 (578)
.++.+..|+.+||++...... |+|+|-+. .-.+..-||..-.+.++++ .+|.|...|.-+
T Consensus 139 nel~lP~g~pV~~~ltS~DVi---------HSF~VP~l---------~~K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~ 198 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM---------NSFFIPQL---------GSQIYAMAGMQTKLHLIAN-EPGVYDGISANY 198 (226)
T ss_pred ceEEEECCCEEEEEEEECchh---------hhhhhhhc---------CCeeecCCCceEEEEEEeC-CCEEEEEEchhh
Confidence 468999999999988766522 44555322 2223334899999999998 689999999853
No 95
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.86 E-value=56 Score=30.88 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=41.4
Q ss_pred EEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEeec
Q 039963 219 RFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARAY 296 (578)
Q Consensus 219 ~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~ 296 (578)
++.+..|+++||++.... -.|.|.+.+... .+..-||..-.+.++++ .+|.|...|.-+
T Consensus 117 ~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~~----------------k~d~~PG~~~~~~~~~~-~~G~y~g~C~e~ 175 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD--VIHSFSVPDLNL----------------KMDAIPGRINHLFFCPD-RHGVFVGYCSEL 175 (194)
T ss_pred eEEEeCCCEEEeeeecCc--cccceeccccCc----------------eeecCCCceEEEEEEcC-CCEEEEEEeehh
Confidence 588999999999887654 223333332211 23334899999999988 689999999853
No 96
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=48.64 E-value=38 Score=34.97 Aligned_cols=59 Identities=24% Similarity=0.433 Sum_probs=29.6
Q ss_pred cCCCceEEEecCCEEEEEEEeCCCCcee--------EEecccccCCC--CCCC-CCC----ccc-ccccCCCCeEEEEEE
Q 039963 61 QFPGPTLQVRDGDTLIITTINRAQYNIT--------LHWHGVNLKGN--PWAD-GPE----YVT-QCPIQPGRSYTYQFT 124 (578)
Q Consensus 61 ~~PgP~i~v~~Gd~v~v~l~N~l~~~~s--------iH~HG~~~~~~--~~~D-G~~----~~~-~~~i~PG~~~~y~~~ 124 (578)
+.||-+| ++.++++|+.+.+.. ++|---..... .+.| -++ .++ +.||+|||+.+.+.+
T Consensus 259 ~vpgR~l------~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V~ 332 (381)
T PF04744_consen 259 RVPGRTL------TMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAPGETRTLTVE 332 (381)
T ss_dssp ESSSSEE------EEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-TT-EEEEEEE
T ss_pred ecCCcEE------EEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCCCceEEEEEE
Confidence 4888888 456889999876533 33322221111 1111 111 123 348999999999998
Q ss_pred e
Q 039963 125 I 125 (578)
Q Consensus 125 ~ 125 (578)
+
T Consensus 333 a 333 (381)
T PF04744_consen 333 A 333 (381)
T ss_dssp E
T ss_pred e
Confidence 7
No 97
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=48.61 E-value=60 Score=27.34 Aligned_cols=70 Identities=24% Similarity=0.340 Sum_probs=42.3
Q ss_pred EEEEEeCCCCceeEEecccccCCCCCCC-CCCcccccccCCCCeEEEEEEecCCCcceeEecccccccccceEEEEEecC
Q 039963 76 IITTINRAQYNITLHWHGVNLKGNPWAD-GPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHSRWIRATVYGAIIIYPR 154 (578)
Q Consensus 76 ~v~l~N~l~~~~siH~HG~~~~~~~~~D-G~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~~~~~~Gl~G~liV~~~ 154 (578)
.|+++|.|.....|..|=-... .| |. ..|.||+++...|.. +--|+-.|.|+..-.......-+.|...
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DDLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----ccCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEec
Confidence 5889999954444444332211 12 22 359999999999975 4557777778876521123566666544
Q ss_pred C
Q 039963 155 I 155 (578)
Q Consensus 155 ~ 155 (578)
.
T Consensus 72 ~ 72 (110)
T PF05938_consen 72 S 72 (110)
T ss_pred c
Confidence 3
No 98
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=45.35 E-value=27 Score=29.83 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=31.3
Q ss_pred EEEEeCCCCc---eeEEecccccCCC---CCCCCCCcccccccCCCCeEEEEEEe--cCCCcce
Q 039963 77 ITTINRAQYN---ITLHWHGVNLKGN---PWADGPEYVTQCPIQPGRSYTYQFTI--EGQEGTL 132 (578)
Q Consensus 77 v~l~N~l~~~---~siH~HG~~~~~~---~~~DG~~~~~~~~i~PG~~~~y~~~~--~~~~Gt~ 132 (578)
|++.|....+ .+-|||=-...+. =...||.| .|.-|+||++|+|.=-. +.+.|+.
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtSg~~l~Tp~G~M 96 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTSGCPLDTPSGTM 96 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcCCcCccCCcceE
Confidence 6667776654 4678873322111 00244433 36679999999996433 3445553
No 99
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=44.88 E-value=94 Score=30.16 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=54.1
Q ss_pred eEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeC
Q 039963 454 KLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVAN 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ad 533 (578)
+-+.++.|+.|++.+...+ ..|.|. |-+.+ ..+|.+ ||-...+.|+++
T Consensus 139 nel~lP~g~pV~~~ltS~D----ViHSF~-------VP~l~------------------~K~Dai---PG~~n~~~~~~~ 186 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS----VMNSFF-------IPQLG------------------SQIYAM---AGMQTKLHLIAN 186 (226)
T ss_pred ceEEEECCCEEEEEEEECc----hhhhhh-------hhhcC------------------CeeecC---CCceEEEEEEeC
Confidence 4578999999999999743 556554 43322 124554 788888999999
Q ss_pred CceeEEEEeechhhH-hccceEEEEEecC
Q 039963 534 NPGIWFMHCHLDSHL-TWGLAMAFLVENG 561 (578)
Q Consensus 534 npG~w~~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
.||.|.-.|--.-=. +..|...++|.+.
T Consensus 187 ~~G~y~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 187 EPGVYDGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred CCEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 999999999765533 4667777777653
No 100
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=42.23 E-value=54 Score=31.55 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=42.3
Q ss_pred eEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEeec
Q 039963 218 VRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARAY 296 (578)
Q Consensus 218 ~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~ 296 (578)
..+.+..|+.+||++...... |+|.| |.-.-.+..-||..-.+.++++ .+|.|...|.-+
T Consensus 130 n~l~iP~g~~v~~~ltS~DVi---------Hsf~v---------P~l~~k~daiPG~~~~~~~~~~-~~G~y~g~Cae~ 189 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADTM---------TSFWI---------PQLGGQKYAMTGMTMNWYLQAD-QVGTYRGRNANF 189 (217)
T ss_pred CcEEEECCCEEEEEEECCchh---------hhhhc---------hhhCceeecCCCceEEEEEEeC-CCEEEEEEehhh
Confidence 357889999999988766522 44444 2222233334899999999998 689999999853
No 101
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=41.97 E-value=1.4e+02 Score=28.91 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=54.1
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+.+.++.|+.|++.+.+. +..|.|.+-+...+ .|. -||....+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~----DViHsf~vP~~~~k-------------------------~da---iPG~~~~~~~~~ 186 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAA----DVIHSWTVPSLGVK-------------------------VDA---VPGRLNQIGFTI 186 (228)
T ss_pred CceEEEecCCEEEEEEEeC----CccccccccccCcc-------------------------eec---CCCceEEEEEEe
Confidence 3567899999999999985 45566555433221 232 277778889999
Q ss_pred CCceeEEEEeechhhH-hccceEEEEEec
Q 039963 533 NNPGIWFMHCHLDSHL-TWGLAMAFLVEN 560 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 560 (578)
+.||.+..-|--+-.. +.-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 187 TRPGVFYGQCSEICGANHSFMPIVLEAVD 215 (228)
T ss_pred CCCEEEEEEChhhcCcCccCceeEEEEEC
Confidence 9999999999877655 456666666654
No 102
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=41.84 E-value=1.3e+02 Score=29.49 Aligned_cols=77 Identities=10% Similarity=0.197 Sum_probs=55.2
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+.+.++.|+.|++.+... +..|.|.+-.-.. .+|.+ ||-...+.|++
T Consensus 150 ~n~lvlP~~~~v~~~~tS~----DViHsf~iP~lgv-------------------------K~Dai---PG~~n~~~~~~ 197 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGA----DVLHSFAVPSLGL-------------------------KIDAV---PGRLNQTGFFI 197 (240)
T ss_pred CceEEEecCCEEEEEEEcC----CcccceeecccCc-------------------------eeecC---CCcceeEEEEc
Confidence 3568899999999999874 4667666543322 23433 66667788999
Q ss_pred CCceeEEEEeechhhH-hccceEEEEEecC
Q 039963 533 NNPGIWFMHCHLDSHL-TWGLAMAFLVENG 561 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
+.||.+.-.|.-+--. +.-|-..++|.+.
T Consensus 198 ~~~G~y~g~C~e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 198 KRPGVFYGQCSEICGANHSFMPIVIEAVSL 227 (240)
T ss_pred CCCEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 9999999999877755 4566667776553
No 103
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=41.72 E-value=61 Score=26.49 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=29.0
Q ss_pred EEEEEEEEcCCCCcEEEEEeCceeEEEeecCccc--c--eeEeeEEEEccCceEEE
Q 039963 227 TVLLRIINAAMNQELFFGVANHNLTVVGVDTSYT--K--AFSTSVIMIAPGQTTNV 278 (578)
Q Consensus 227 ~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~--~--p~~~d~v~l~pger~dv 278 (578)
.|++||-|.+.. .+.|-...+.+...||... . .+....=+|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 588999999855 4677777788887777532 1 12234557888886554
No 104
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=39.03 E-value=2e+02 Score=25.67 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=44.6
Q ss_pred cEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeE-------eeEEEEccCceE-EEEEEeCCCCceeEEEEe
Q 039963 226 ETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFS-------TSVIMIAPGQTT-NVLLTADQPPARYYMAAR 294 (578)
Q Consensus 226 ~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~-------~d~v~l~pger~-dv~v~~~~~~G~y~i~~~ 294 (578)
.+|-|.+-|.|.. .+.++...++|+ +||+.+.|.. .++|.|.|||-. .+.+... ..|.-.+...
T Consensus 70 ~t~t~yiKNtG~~---~~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~-lSGyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSD---SIAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEA-LSGYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCc---ccccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccC-CCcceEEEEE
Confidence 4788999999954 346788888887 8998875532 357889999988 5555544 3355455444
No 105
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=38.53 E-value=2.2e+02 Score=25.56 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=34.9
Q ss_pred ceEEEecCCEEEEEEEeCCCC-----ceeEEec--c-cccCC-CCCCCCCCcc-----cccccCCCCeEEEEEEe
Q 039963 65 PTLQVRDGDTLIITTINRAQY-----NITLHWH--G-VNLKG-NPWADGPEYV-----TQCPIQPGRSYTYQFTI 125 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~-----~~siH~H--G-~~~~~-~~~~DG~~~~-----~~~~i~PG~~~~y~~~~ 125 (578)
+.=.++.|.+..|.+.=..+. .+.+|-- | +.++. -...||.... .-||+.+||.++|.+.+
T Consensus 48 ~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~sl 122 (158)
T KOG4063|consen 48 TPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSL 122 (158)
T ss_pred CceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEe
Confidence 345577888776666544432 2233221 1 22211 1225664433 57999999999999987
No 106
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=38.49 E-value=1.2e+02 Score=27.72 Aligned_cols=58 Identities=10% Similarity=0.136 Sum_probs=38.7
Q ss_pred EEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEee
Q 039963 219 RFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARA 295 (578)
Q Consensus 219 ~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~ 295 (578)
.+.+..|..+||++..+... |.|.+....++ +..-||..-.+.+.+. .+|.|...|.-
T Consensus 74 ~LvLP~g~~Vr~~lTS~DVI--HSF~VP~lgvK----------------~DavPGr~n~l~~~~~-~~G~y~gqCsE 131 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATDVI--HSWSVPSLGIK----------------ADAIPGRLHKINTFIL-REGVFYGQCSE 131 (162)
T ss_pred CEEEeCCCEEEEEEEeCccc--eeeeccccCce----------------eeccCCceEEEEEecC-CCeEEEEEcch
Confidence 47789999999977765522 33333322222 2223787777888877 68999999985
No 107
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=38.37 E-value=1.3e+02 Score=26.03 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=43.0
Q ss_pred EEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCccccee----EeeEEEEccCceEEEEEEeCC--CCceeEEEE
Q 039963 220 FQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAF----STSVIMIAPGQTTNVLLTADQ--PPARYYMAA 293 (578)
Q Consensus 220 l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~----~~d~v~l~pger~dv~v~~~~--~~G~y~i~~ 293 (578)
-.+..|+.+++++-=......-.+.+ .+.+...+|..+-.. ....+....++++.+.++++. .+|.|.+..
T Consensus 29 ~~~~~ge~~~i~i~~~~~~~i~~~~~---~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v 105 (142)
T PF14524_consen 29 SSFESGEPIRIRIDYEVNEDIDDPVF---GFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISV 105 (142)
T ss_dssp SSEETTSEEEEEEEEEESS-EEEEEE---EEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEE
T ss_pred eEEeCCCEEEEEEEEEECCCCCccEE---EEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEE
Confidence 35788999988887665343334333 366777777655221 122455555888888888875 579999998
Q ss_pred ee
Q 039963 294 RA 295 (578)
Q Consensus 294 ~~ 295 (578)
..
T Consensus 106 ~l 107 (142)
T PF14524_consen 106 GL 107 (142)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 108
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=36.84 E-value=1.1e+02 Score=26.58 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCC
Q 039963 228 VLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQP 285 (578)
Q Consensus 228 ~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~ 285 (578)
+.|-|-|.+....+.+ .+..-...+|.+++.+-..-+.|.|-++.++.|+-++.
T Consensus 27 ~tLSiRNtd~~~~i~i----~~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D~ 80 (125)
T PF11322_consen 27 ATLSIRNTDPTDPIYI----TSVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESDT 80 (125)
T ss_pred EEEEEEcCCCCCCEEE----EEEEEECCCCeEhHHhcCCCeEcCCCceEEEEEecccC
Confidence 4556668876666544 35566788999999999999999999999999987753
No 109
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=35.63 E-value=1.4e+02 Score=28.71 Aligned_cols=76 Identities=8% Similarity=0.004 Sum_probs=53.3
Q ss_pred eEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeC
Q 039963 454 KLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVAN 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ad 533 (578)
+-+.++.|+.|++.+...+ ..|.| +|=+.+ ..+|.+ ||-...+.|+++
T Consensus 130 n~l~iP~g~~v~~~ltS~D----ViHsf-------~vP~l~------------------~k~dai---PG~~~~~~~~~~ 177 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD----TMTSF-------WIPQLG------------------GQKYAM---TGMTMNWYLQAD 177 (217)
T ss_pred CcEEEECCCEEEEEEECCc----hhhhh-------hchhhC------------------ceeecC---CCceEEEEEEeC
Confidence 4578899999999998743 45554 443222 124554 788888999999
Q ss_pred CceeEEEEeechhhH-hccceEEEEEecC
Q 039963 534 NPGIWFMHCHLDSHL-TWGLAMAFLVENG 561 (578)
Q Consensus 534 npG~w~~HCHil~H~-d~GM~~~~~V~~~ 561 (578)
.||.|--.|=-.-=. +.-|...++|.+.
T Consensus 178 ~~G~y~g~Cae~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 178 QVGTYRGRNANFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred CCEEEEEEehhhcCccccCCeEEEEEeCH
Confidence 999999999654422 4567777777654
No 110
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=34.74 E-value=1.1e+02 Score=29.66 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=40.8
Q ss_pred EEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEee
Q 039963 219 RFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARA 295 (578)
Q Consensus 219 ~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~ 295 (578)
.+.+..|+.+|+++.+.... |.+.+.+..+ .+..-||..-.+.+.++ .+|.|...|.-
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--Hsf~vP~~~~----------------k~daiPG~~~~~~~~~~-~~G~~~g~Cse 198 (228)
T MTH00008 141 RAVLPMQTEIRVLVTAADVI--HSWTVPSLGV----------------KVDAVPGRLNQIGFTIT-RPGVFYGQCSE 198 (228)
T ss_pred eEEEecCCEEEEEEEeCCcc--ccccccccCc----------------ceecCCCceEEEEEEeC-CCEEEEEEChh
Confidence 58899999999999886522 2333332222 22333799999999888 68999999984
No 111
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=33.74 E-value=3.2e+02 Score=23.80 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=60.8
Q ss_pred EEEeeC-CCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCC-------CCCCCCCCCC-C-CCcceeEEeCCCc
Q 039963 455 LYKLKF-GSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNP-------STDTPKFNLI-D-PPRRNTIGMPPGG 524 (578)
Q Consensus 455 ~~~~~~-g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~-------~~~~~~~~~~-~-p~~rDTv~vpp~~ 524 (578)
-+.++- ++.+.++|.|.+.+ |--.=||.+-|...++ .+. +.....|-+. + -++..|=.|.+|+
T Consensus 17 ~i~V~a~~k~vtv~l~h~G~l-----pk~~MgHN~Vl~k~~d--~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGe 89 (125)
T TIGR02695 17 SISVPKSCKEFTVNLKHTGKL-----PKAVMGHNWVLAKSAD--MQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGE 89 (125)
T ss_pred EEEEcCCCcEEEEEEecCCcC-----chhccCccEEEecccc--HHHHHHHHHhcccccCccCCCCcceEEEccccCCCc
Confidence 466675 58999999997633 2222345554544321 111 0001222222 2 3466788899999
Q ss_pred EEEEEEEeC--Ccee-EEEEeechhhHhccceEEEE
Q 039963 525 WVAIRFVAN--NPGI-WFMHCHLDSHLTWGLAMAFL 557 (578)
Q Consensus 525 ~~~irf~ad--npG~-w~~HCHil~H~d~GM~~~~~ 557 (578)
...|.|.+. .+|. |.|=|=.--|.. .|-+.++
T Consensus 90 s~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 90 KTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred eEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 999999985 5885 999999999996 5777764
No 112
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=32.55 E-value=51 Score=29.55 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=20.8
Q ss_pred eCCCcEEEEEEEe-CCc---eeEEEEeech
Q 039963 520 MPPGGWVAIRFVA-NNP---GIWFMHCHLD 545 (578)
Q Consensus 520 vpp~~~~~irf~a-dnp---G~w~~HCHil 545 (578)
|+||..++|.++. .|| |+|+|+|-..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 5789999999964 576 8999998643
No 113
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=31.70 E-value=1.3e+02 Score=26.35 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=33.8
Q ss_pred EEEEEEEEcCCCCcEEEEEeCceeEEEeecCccc----ceeEeeEEEEccCceEEEE
Q 039963 227 TVLLRIINAAMNQELFFGVANHNLTVVGVDTSYT----KAFSTSVIMIAPGQTTNVL 279 (578)
Q Consensus 227 ~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~----~p~~~d~v~l~pger~dv~ 279 (578)
.|++||.|.+.. .+.|-...+.+...||... ...-...=.|.|||++...
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 488999998743 4677778888888887643 1233445578888865543
No 114
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.61 E-value=2.6e+02 Score=27.16 Aligned_cols=76 Identities=9% Similarity=0.183 Sum_probs=52.8
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+.+.++.|+.+++.+... +..|.|.+-.... ..|.+ ||....+.|++
T Consensus 139 dn~lvlP~~~~v~~~~tS~----DViHsf~iP~lg~-------------------------k~dai---PG~~~~~~~~~ 186 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSSA----DVLHSWAVPSLGV-------------------------KMDAV---PGRLNQTTFFI 186 (229)
T ss_pred CceEEEecCeEEEEEEEEC----CccccccccccCc-------------------------eeecC---CCceEEEEEEc
Confidence 3567899999999999874 4667665543221 23443 67778889999
Q ss_pred CCceeEEEEeechhhHh-ccceEEEEEec
Q 039963 533 NNPGIWFMHCHLDSHLT-WGLAMAFLVEN 560 (578)
Q Consensus 533 dnpG~w~~HCHil~H~d-~GM~~~~~V~~ 560 (578)
+.||.+...|--+--.. .=|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 187 SRTGLFYGQCSEICGANHSFMPIVIESVP 215 (229)
T ss_pred CCCEEEEEEcccccCcCcCCCeEEEEEeC
Confidence 99999999998776553 34444555543
No 115
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.88 E-value=3e+02 Score=26.80 Aligned_cols=76 Identities=13% Similarity=0.247 Sum_probs=51.8
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+.+.++.|+.+++.+...+ ..|.| .|-+.|. ..|.+ ||....+.+.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----ViHsf-------~iP~lg~------------------k~dai---PG~~~~~~~~~ 186 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAED----VLHSW-------TVPALGV------------------KMDAV---PGRLNQATFII 186 (230)
T ss_pred CCeEEEecCCEEEEEEEcCc----ccccc-------cccccCc------------------eeEec---CCceEEEEEEe
Confidence 45678999999999998743 45544 4433221 12332 77777888999
Q ss_pred CCceeEEEEeechhhH-hccceEEEEEec
Q 039963 533 NNPGIWFMHCHLDSHL-TWGLAMAFLVEN 560 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 560 (578)
+.||.+.--|.-+-.. +.-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 187 SRPGLYYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CCcEEEEEEchhhcCcCcCCCeEEEEEEC
Confidence 9999999999886655 345555666544
No 116
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=30.88 E-value=2.6e+02 Score=27.08 Aligned_cols=76 Identities=13% Similarity=0.256 Sum_probs=52.8
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+.+.++.|+.|++.+...+ ..|. |.|-+.| ...|.+ ||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----ViHs-------f~ip~lg------------------~k~dai---PG~~~~~~~~~ 186 (227)
T MTH00098 139 DNRVVLPMEMPIRMLISSED----VLHS-------WAVPSLG------------------LKTDAI---PGRLNQTTLMS 186 (227)
T ss_pred cceEEecCCCEEEEEEEECc----cccc-------ccccccc------------------cceecC---CCceEEEEEec
Confidence 35678999999999999743 4444 4443322 113333 77778889999
Q ss_pred CCceeEEEEeechhhH-hccceEEEEEec
Q 039963 533 NNPGIWFMHCHLDSHL-TWGLAMAFLVEN 560 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 560 (578)
+.||.+..-|.-+-.. +.-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 187 TRPGLYYGQCSEICGSNHSFMPIVLELVP 215 (227)
T ss_pred CCcEEEEEECccccCcCcCCceEEEEEeC
Confidence 9999999999886655 455666666654
No 117
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=30.81 E-value=37 Score=28.25 Aligned_cols=31 Identities=39% Similarity=0.441 Sum_probs=25.9
Q ss_pred EEEECCcCCCceEEEecCCEEEEEEEeCCCC
Q 039963 55 TVTVNGQFPGPTLQVRDGDTLIITTINRAQY 85 (578)
Q Consensus 55 ~~~~NG~~PgP~i~v~~Gd~v~v~l~N~l~~ 85 (578)
-..+||+.-=|.=.|+.||.|+|++.|..-.
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~~ 65 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEFT 65 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEEE
Confidence 3578998767899999999999999998543
No 118
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=30.41 E-value=2.3e+02 Score=24.41 Aligned_cols=61 Identities=23% Similarity=0.467 Sum_probs=35.3
Q ss_pred CceEEEecCCEEEEEEEeCCC---CceeEEec----ccccC-CCCCCCCCCcccccccCCCCeEEEEEEe
Q 039963 64 GPTLQVRDGDTLIITTINRAQ---YNITLHWH----GVNLK-GNPWADGPEYVTQCPIQPGRSYTYQFTI 125 (578)
Q Consensus 64 gP~i~v~~Gd~v~v~l~N~l~---~~~siH~H----G~~~~-~~~~~DG~~~~~~~~i~PG~~~~y~~~~ 125 (578)
+..=.++.|..+.+.+.=..+ .......| |+..+ +....||--+ ..|||.+|++++|.+.+
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEee
Confidence 344556778877766553222 22333334 33332 1122566422 47999999999999976
No 119
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.16 E-value=1.8e+02 Score=28.19 Aligned_cols=59 Identities=12% Similarity=0.228 Sum_probs=40.4
Q ss_pred eEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEee
Q 039963 218 VRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARA 295 (578)
Q Consensus 218 ~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~ 295 (578)
..+.+..|+.+|+++..+.. .|.+.+..... + +..-||..-.+.+.++ .+|.|...|.-
T Consensus 140 n~l~lP~~~~v~~~~tS~DV--iHsf~vp~l~~-------------k---~davPG~~~~~~~~~~-~~G~y~g~Cse 198 (227)
T MTH00154 140 NRLVLPMNTQIRILITAADV--IHSWTVPSLGV-------------K---VDAVPGRLNQLNFLIN-RPGLFFGQCSE 198 (227)
T ss_pred ceEEEecCCEEEEEEEcCch--hhheeccccCC-------------e---eecCCCceEEEEEEEc-CceEEEEEeec
Confidence 35889999999998876652 23333332211 1 2223788888888888 68999999984
No 120
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=30.15 E-value=1.4e+02 Score=29.04 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=39.6
Q ss_pred EEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEee
Q 039963 219 RFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARA 295 (578)
Q Consensus 219 ~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~ 295 (578)
.+.+..|+.+|+++.-.... |.|.+-+ -.-.+..-||..-.+.+.++ .||.|...|.-
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi---------Hsf~ip~---------lg~k~daiPG~~~~~~~~~~-~~G~~~g~Cse 198 (227)
T MTH00098 141 RVVLPMEMPIRMLISSEDVL---------HSWAVPS---------LGLKTDAIPGRLNQTTLMST-RPGLYYGQCSE 198 (227)
T ss_pred eEEecCCCEEEEEEEECccc---------ccccccc---------cccceecCCCceEEEEEecC-CcEEEEEECcc
Confidence 57899999999988766522 3333311 11122333798888888888 68999999984
No 121
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=29.73 E-value=2.3e+02 Score=24.46 Aligned_cols=61 Identities=21% Similarity=0.404 Sum_probs=34.4
Q ss_pred ceEEEecCCEEEEEEEeCCCC-----ceeEEec--ccccCCC-CCCCCCCcc-cccccCCCCeEEEEEEe
Q 039963 65 PTLQVRDGDTLIITTINRAQY-----NITLHWH--GVNLKGN-PWADGPEYV-TQCPIQPGRSYTYQFTI 125 (578)
Q Consensus 65 P~i~v~~Gd~v~v~l~N~l~~-----~~siH~H--G~~~~~~-~~~DG~~~~-~~~~i~PG~~~~y~~~~ 125 (578)
..=.++.|..+.+.+.=..++ .+.+|+. |+..+.. ...|+=... ..|||.+|+.++|.+.+
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEee
Confidence 344566777776665532221 2334433 4443321 124553222 57999999999999976
No 122
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.47 E-value=1.6e+02 Score=28.81 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=40.5
Q ss_pred eEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEee
Q 039963 218 VRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARA 295 (578)
Q Consensus 218 ~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~ 295 (578)
..+.+..|+.+|+++.++... |.+.+.+..++ +..-||..-.+.+.++ .+|.|...|.-
T Consensus 144 n~lvlP~~~~v~~~itS~DVi--Hsf~vp~lg~k----------------~daiPG~~~~~~~~~~-~~G~y~g~Cse 202 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAADVL--HSFAVPSLSVK----------------IDAVPGRLNQTSFFIK-RPGVFYGQCSE 202 (234)
T ss_pred eEEEEecCcEEEEEEEeCchh--ccccccccCce----------------eEccCCceEeEEEEeC-CCEEEEEEChh
Confidence 358899999999999877522 23333322211 2333788888888888 68999999974
No 123
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=29.45 E-value=3.3e+02 Score=23.54 Aligned_cols=60 Identities=5% Similarity=0.025 Sum_probs=40.1
Q ss_pred EEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCccc-------ceeEeeEEEEccCceEEEEEEeCC
Q 039963 220 FQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYT-------KAFSTSVIMIAPGQTTNVLLTADQ 284 (578)
Q Consensus 220 l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~-------~p~~~d~v~l~pger~dv~v~~~~ 284 (578)
+++..-..|+|++-..+ ...|.|+|..+ +..++... ......++.+..|++++|.|...+
T Consensus 54 ~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 54 FKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 67766667999988443 46777888755 44554432 345667888999999999888754
No 124
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.08 E-value=1.8e+02 Score=28.13 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=53.1
Q ss_pred CceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEE
Q 039963 452 GTKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFV 531 (578)
Q Consensus 452 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ 531 (578)
..+.+.++.|+.|++.+... +..|.|.+- +.+ ..+|.+ ||-...+.|.
T Consensus 138 ~~n~l~lP~~~~v~~~~tS~----DViHsf~vP-------~l~------------------~K~Dai---PG~~n~~~~~ 185 (226)
T MTH00139 138 VDNRLVLPYKSNIRALITAA----DVLHSWTVP-------SLG------------------VKIDAV---PGRLNQVGFF 185 (226)
T ss_pred cCceEEEecCCEEEEEEecC----ccccceecc-------ccC------------------ccccCC---CCcEEEEEEE
Confidence 34568899999999999874 455665443 322 124544 6777888999
Q ss_pred eCCceeEEEEeechhhH-hccceEEEEEec
Q 039963 532 ANNPGIWFMHCHLDSHL-TWGLAMAFLVEN 560 (578)
Q Consensus 532 adnpG~w~~HCHil~H~-d~GM~~~~~V~~ 560 (578)
++.||.+.--|--+-=. +.-|-..++|.+
T Consensus 186 ~~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 186 INRPGVFYGQCSEICGANHSFMPIVVEAIS 215 (226)
T ss_pred cCCCEEEEEEChhhcCcCcCCCeEEEEEeC
Confidence 99999999999766533 345555666554
No 125
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=28.99 E-value=1e+02 Score=31.49 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=43.1
Q ss_pred EEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEeecc
Q 039963 219 RFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARAYN 297 (578)
Q Consensus 219 ~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~~~ 297 (578)
.+.+..|+.+||++...... |.|.| |.-.-.+..-||..-.+.+.++ .+|.|...|.-+.
T Consensus 152 eL~iP~g~pV~f~lTS~DVi---------HSF~I---------P~Lg~K~damPG~~n~l~~~a~-~~G~Y~G~CaEyC 211 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM---------NSFFI---------PRLGSQIYAMAGMQTRLHLIAN-EPGTYDGISASYS 211 (315)
T ss_pred cEEEecCCEEEEEEEEchhh---------hhhhh---------hhhCCeeecCCCceeEEEEEcC-CCEEEEEEChhhc
Confidence 58899999999999877632 33444 2222334444788888888888 6899999998543
No 126
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=27.34 E-value=1.7e+02 Score=21.99 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEe
Q 039963 220 FQVEAGETVLLRIINAAMNQELFFGVANHNLTVVG 254 (578)
Q Consensus 220 l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via 254 (578)
+.+.+|+..+||.-... .+.+.+-.+++.-
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~ 31 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR 31 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC
Confidence 46678888888855443 4666666777754
No 127
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.26 E-value=4.4e+02 Score=24.56 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=18.1
Q ss_pred ccccCCCCeEEEEEEe-cCCCccee
Q 039963 110 QCPIQPGRSYTYQFTI-EGQEGTLW 133 (578)
Q Consensus 110 ~~~i~PG~~~~y~~~~-~~~~Gt~~ 133 (578)
-.-|+||++.++.|.+ +...|.|-
T Consensus 80 ~~~i~pg~~vsh~~vv~p~~~G~f~ 104 (181)
T PF05753_consen 80 WERIPPGENVSHSYVVRPKKSGYFN 104 (181)
T ss_pred EEEECCCCeEEEEEEEeeeeeEEEE
Confidence 3469999999999988 45567654
No 128
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.48 E-value=2.2e+02 Score=27.71 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=39.9
Q ss_pred eEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEee
Q 039963 218 VRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARA 295 (578)
Q Consensus 218 ~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~ 295 (578)
..+.+..|+.+|+++..... .|.+.+.+... .+..-||..-.+.+.++ .+|.|...|.-
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~iP~lg~----------------k~daiPG~~~~~~~~~~-~~G~~~g~Cse 198 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDV--LHSWTVPALGV----------------KMDAVPGRLNQATFIIS-RPGLYYGQCSE 198 (230)
T ss_pred CeEEEecCCEEEEEEEcCcc--cccccccccCc----------------eeEecCCceEEEEEEeC-CcEEEEEEchh
Confidence 45889999999998876552 22333332221 22333788888888888 68999999984
No 129
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=25.29 E-value=2.2e+02 Score=24.12 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=26.1
Q ss_pred EEEEEEEEcCCCCc-EEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeC
Q 039963 227 TVLLRIINAAMNQE-LFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTAD 283 (578)
Q Consensus 227 ~~rlrliN~~~~~~-~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~ 283 (578)
.|+++|+|.+.... +.+.+.|.+ |..+. .....+.|.+|+..++.|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~-------~~~l~-~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLP-------GAELQ-GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-S-------S-EE--ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CeEEE-CCCcceEECCCCEEEEEEEEE
Confidence 58999999995443 355555532 22111 135788899999887776654
No 130
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.29 E-value=2.9e+02 Score=26.85 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=53.8
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+-+.++.|+.|++.+...+ .. |.|.|-+.+. ..|. -||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----Vi-------Hsf~ip~~~~------------------k~da---~PG~~~~~~~~~ 186 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAED----VL-------HSWAVPALGV------------------KMDA---VPGRLNQTAFIA 186 (230)
T ss_pred cceEEEecCcEEEEEEEeCc----cc-------cceeccccCC------------------cccc---CCCceEEEEEEe
Confidence 45678999999999998744 44 4566644431 1233 378888889999
Q ss_pred CCceeEEEEeechhhH-hccceEEEEEec
Q 039963 533 NNPGIWFMHCHLDSHL-TWGLAMAFLVEN 560 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 560 (578)
+.||.+...|.-+--. +..|-..++|.+
T Consensus 187 ~~~G~~~g~C~e~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 187 SRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CCceEEEEEChhhccccccCCcEEEEEEC
Confidence 9999999999876544 466666666654
No 131
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=24.93 E-value=3.5e+02 Score=21.34 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=10.4
Q ss_pred EecCcEEEEEEEEcC
Q 039963 222 VEAGETVLLRIINAA 236 (578)
Q Consensus 222 v~~G~~~rlrliN~~ 236 (578)
.+.||+++|++-..-
T Consensus 3 ~~~Ge~v~~~~~~~~ 17 (83)
T PF14326_consen 3 YRVGERVRFRVTSNR 17 (83)
T ss_pred ccCCCEEEEEEEeCC
Confidence 567888888777643
No 132
>PRK13202 ureB urease subunit beta; Reviewed
Probab=24.75 E-value=2.4e+02 Score=23.63 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=39.0
Q ss_pred EEEEecC--cEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcc-----------cceeEeeEEEEccCceEEEEEEeC
Q 039963 219 RFQVEAG--ETVLLRIINAAMNQELFFGVANHNLTVVGVDTSY-----------TKAFSTSVIMIAPGQTTNVLLTAD 283 (578)
Q Consensus 219 ~l~v~~G--~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~-----------~~p~~~d~v~l~pger~dv~v~~~ 283 (578)
.+.+.+| +++.+++.|.| .+++.+--| ++..+++..+ +.=....++..-||+..+|.+..-
T Consensus 12 ~I~ln~grr~~~~l~V~NtG-DRPIQVGSH---yHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 85 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAG-DRPVQVGSH---VHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPL 85 (104)
T ss_pred CEEeCCCCCceEEEEEEeCC-CCceEEccc---cchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEc
Confidence 4778888 58899999999 666554433 3333333322 211134578888888888887754
No 133
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=24.49 E-value=3.7e+02 Score=21.48 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=37.6
Q ss_pred cEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEee
Q 039963 226 ETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARA 295 (578)
Q Consensus 226 ~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~ 295 (578)
..++|.|.|.| .....| +|..... ......++.|.+|++.++.+.....-|-|-+..+.
T Consensus 20 g~l~l~l~N~g-~~~~~~-------~v~~~~y---~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~~ 78 (89)
T PF05506_consen 20 GNLRLTLSNPG-SAAVTF-------TVYDNAY---GGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVTG 78 (89)
T ss_pred CEEEEEEEeCC-CCcEEE-------EEEeCCc---CCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEEc
Confidence 47999999998 344333 3333111 11234678888999988888875455667776663
No 134
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.66 E-value=4.1e+02 Score=25.87 Aligned_cols=76 Identities=11% Similarity=0.169 Sum_probs=52.2
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+.+.++.|+.|++.+.+. +..|.|.+=.... ..|. -||....+.|.+
T Consensus 143 dn~lvlP~~~~v~~~itS~----DViHsf~vp~lg~-------------------------k~da---iPG~~~~~~~~~ 190 (234)
T MTH00051 143 DNRLIVPIQTQVRVLVTAA----DVLHSFAVPSLSV-------------------------KIDA---VPGRLNQTSFFI 190 (234)
T ss_pred ceEEEEecCcEEEEEEEeC----chhccccccccCc-------------------------eeEc---cCCceEeEEEEe
Confidence 4567899999999999985 4556555433221 1233 267777888999
Q ss_pred CCceeEEEEeechhhH-hccceEEEEEec
Q 039963 533 NNPGIWFMHCHLDSHL-TWGLAMAFLVEN 560 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 560 (578)
+.||.+.--|.-+--. +.-|-..++|.+
T Consensus 191 ~~~G~y~g~Cse~CG~~Hs~M~i~v~vv~ 219 (234)
T MTH00051 191 KRPGVFYGQCSEICGANHSFMPIVIEGVS 219 (234)
T ss_pred CCCEEEEEEChhhcCcccccCeeEEEEEC
Confidence 9999999999876544 355555666554
No 135
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.44 E-value=2.1e+02 Score=25.58 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=23.1
Q ss_pred EEccCceEEEEEEeCCCC---ceeEEEEeecccc
Q 039963 269 MIAPGQTTNVLLTADQPP---ARYYMAARAYNSA 299 (578)
Q Consensus 269 ~l~pger~dv~v~~~~~~---G~y~i~~~~~~~~ 299 (578)
.|.||+.+.|.+..-.+| |.|.+.+.+...+
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G 131 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPG 131 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCC
Confidence 367899999999543233 8999999986554
No 136
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=23.37 E-value=3.1e+02 Score=28.13 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=51.2
Q ss_pred eEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEeC
Q 039963 454 KLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVAN 533 (578)
Q Consensus 454 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~ad 533 (578)
+-+.++.|+.|++.+...+ ..|.| +|-..+. ..|.+ ||-...+.|.++
T Consensus 151 NeL~iP~g~pV~f~lTS~D----ViHSF-------~IP~Lg~------------------K~dam---PG~~n~l~~~a~ 198 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNS----VMNSF-------FIPRLGS------------------QIYAM---AGMQTRLHLIAN 198 (315)
T ss_pred ccEEEecCCEEEEEEEEch----hhhhh-------hhhhhCC------------------eeecC---CCceeEEEEEcC
Confidence 4578899999999999743 44554 4433221 12332 677788999999
Q ss_pred CceeEEEEeechhhH-hccceEEEEEe
Q 039963 534 NPGIWFMHCHLDSHL-TWGLAMAFLVE 559 (578)
Q Consensus 534 npG~w~~HCHil~H~-d~GM~~~~~V~ 559 (578)
.||.|.-.|-..-=. ...|...++|.
T Consensus 199 ~~G~Y~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 199 EPGTYDGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred CCEEEEEEChhhcCccccCCeEEEEEE
Confidence 999999999766633 35666666665
No 137
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.04 E-value=4.3e+02 Score=25.62 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=52.1
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+.+.++.|+.+++.+... +..|.| .|-+.| ...|.+ ||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~tS~----DViHsf-------~vP~lg------------------~k~da~---PG~~n~~~~~~ 186 (228)
T MTH00076 139 DNRMVVPMESPIRMLITAE----DVLHSW-------AVPSLG------------------IKTDAI---PGRLNQTSFIA 186 (228)
T ss_pred CceEEEecCCEEEEEEEec----cccccc-------cccccC------------------ceEEcc---CCcceeEEEEe
Confidence 3568899999999999874 355554 443222 112333 67777888999
Q ss_pred CCceeEEEEeechhhH-hccceEEEEEec
Q 039963 533 NNPGIWFMHCHLDSHL-TWGLAMAFLVEN 560 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 560 (578)
+.||.+..-|.-+-.. +..|-..++|.+
T Consensus 187 ~~~G~~~g~C~e~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 187 SRPGVYYGQCSEICGANHSFMPIVVEATP 215 (228)
T ss_pred CCcEEEEEEChhhcCccccCCceEEEEeC
Confidence 9999999999876644 455666666544
No 138
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=22.95 E-value=4.1e+02 Score=21.50 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=36.3
Q ss_pred EEecCcEE--EEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeC-C-CCceeEE
Q 039963 221 QVEAGETV--LLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTAD-Q-PPARYYM 291 (578)
Q Consensus 221 ~v~~G~~~--rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~-~-~~G~y~i 291 (578)
.+..|+++ .+.|.|.| .....+++.... ....... ..-..-.|+||+..++.|.+. . ..|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s-~~p~~f~v~~~~-----~~~~~~~-v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTS-SIPARFRVRQPE-----SLSSFFS-VEPPSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECC-CCCEEEEEEeCC-----cCCCCEE-EECCCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 45567666 58999999 445555553111 0011110 011234699999999988887 3 3476543
No 139
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=22.77 E-value=4.9e+02 Score=22.30 Aligned_cols=60 Identities=8% Similarity=0.047 Sum_probs=35.1
Q ss_pred EEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCccc-ceeEeeEEEEccCceEEEEEEeCC
Q 039963 220 FQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYT-KAFSTSVIMIAPGQTTNVLLTADQ 284 (578)
Q Consensus 220 l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~-~p~~~d~v~l~pger~dv~v~~~~ 284 (578)
+++.....|+|.+... ....+.|+|.. |+...+... .+.....+.|..|+++.|.|...+
T Consensus 52 i~~~~~G~y~f~~~~~---~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 52 LKPPEDGEYTFSITSD---DGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EECCCCccEEEEEEcC---CcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 5555555688888533 33567787753 343333221 223344677788888887777654
No 140
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.76 E-value=4.5e+02 Score=25.44 Aligned_cols=76 Identities=13% Similarity=0.272 Sum_probs=52.7
Q ss_pred ceEEEeeCCCEEEEEEEeCCCCCCCCCCccccCCceEEEEeccCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039963 453 TKLYKLKFGSSVQLVWQDTSIVTVEDHPMHLHGHEFYVVGSGFGNFNPSTDTPKFNLIDPPRRNTIGMPPGGWVAIRFVA 532 (578)
Q Consensus 453 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vpp~~~~~irf~a 532 (578)
.+.+.++.|+.+++.+...+ ..|. |.|-+.| ...|.+ ||....+.|++
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----ViHs-------f~vP~lg------------------~K~Dav---PG~~n~~~~~~ 186 (227)
T MTH00117 139 DHRMVIPMESPIRILITAED----VLHS-------WAVPSLG------------------VKTDAV---PGRLNQTSFIT 186 (227)
T ss_pred cceEEEecCceEEEEEEecc----hhhc-------ccccccC------------------ceeEec---CCceEEEEEEE
Confidence 45688999999999998743 4554 4443332 123443 77788889999
Q ss_pred CCceeEEEEeechhhH-hccceEEEEEec
Q 039963 533 NNPGIWFMHCHLDSHL-TWGLAMAFLVEN 560 (578)
Q Consensus 533 dnpG~w~~HCHil~H~-d~GM~~~~~V~~ 560 (578)
+.||.|.--|--+-.. +.-|-..++|.+
T Consensus 187 ~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 187 TRPGVFYGQCSEICGANHSFMPIVVESVP 215 (227)
T ss_pred cccceEEEEeccccccCccCCeEEEEEcC
Confidence 9999999999876654 355555666544
No 141
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=22.68 E-value=4.1e+02 Score=30.41 Aligned_cols=67 Identities=15% Similarity=0.292 Sum_probs=42.6
Q ss_pred CCceEEEec---CCEEEEEEEeCCCCceeEEecccccCCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeEeccc
Q 039963 63 PGPTLQVRD---GDTLIITTINRAQYNITLHWHGVNLKGNPWADGPEYVTQCPIQPGRSYTYQFTIEGQEGTLWWHAHS 138 (578)
Q Consensus 63 PgP~i~v~~---Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~~Gt~~YH~h~ 138 (578)
+.|.++++. ...|+|+|.|....+..+|..--.. .++.+ ....|.+|++.+..|.+ ...+ -||---+
T Consensus 592 ~~~~~~~~~d~a~G~L~L~L~N~G~~a~~ftV~d~~Y-----~~~~p--r~ytV~aG~~~~~~w~l-~~s~-GWYDLtV 661 (690)
T TIGR03396 592 AVPEVRVCYDVANGNLYLTLSNAGRSPVTVTVTDNAY-----GGAGP--RTVTVAPGQRVELHWDL-SASG-GWYDFTV 661 (690)
T ss_pred CCCceEEEEecCCCEEEEEEEeCCCCcEEEEEEeCCC-----CCCCC--EEEEECCCCEEEEEEec-cCCC-CceEEEE
Confidence 446677654 4579999999998888887753221 11111 12458999999999976 2222 5665443
No 142
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.70 E-value=3.3e+02 Score=26.35 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=39.8
Q ss_pred EEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEee
Q 039963 219 RFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARA 295 (578)
Q Consensus 219 ~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~ 295 (578)
.+.+..|+.+|+++..+... |.|.+-+ -.-.+..-||..-.+.+.++ .||.|...|.-
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi---------Hsf~vP~---------lg~K~DavPG~~n~~~~~~~-~~G~y~g~CsE 198 (227)
T MTH00117 141 RMVIPMESPIRILITAEDVL---------HSWAVPS---------LGVKTDAVPGRLNQTSFITT-RPGVFYGQCSE 198 (227)
T ss_pred eEEEecCceEEEEEEecchh---------hcccccc---------cCceeEecCCceEEEEEEEc-ccceEEEEecc
Confidence 57899999999988766522 3344321 11122333798888888888 68999999984
No 143
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.04 E-value=3e+02 Score=26.91 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=39.9
Q ss_pred eEEEEecCcEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcccceeEeeEEEEccCceEEEEEEeCCCCceeEEEEee
Q 039963 218 VRFQVEAGETVLLRIINAAMNQELFFGVANHNLTVVGVDTSYTKAFSTSVIMIAPGQTTNVLLTADQPPARYYMAARA 295 (578)
Q Consensus 218 ~~l~v~~G~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~v~l~pger~dv~v~~~~~~G~y~i~~~~ 295 (578)
..+.+..|+.+|+++.... -.|.+.+....+++ ..-||..-.+.+.++ .||.|...|.-
T Consensus 151 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lgvK~----------------DaiPG~~n~~~~~~~-~~G~y~g~C~e 209 (240)
T MTH00023 151 NRLVVPINTHVRILVTGAD--VLHSFAVPSLGLKI----------------DAVPGRLNQTGFFIK-RPGVFYGQCSE 209 (240)
T ss_pred ceEEEecCCEEEEEEEcCC--cccceeecccCcee----------------ecCCCcceeEEEEcC-CCEEEEEEchh
Confidence 3588999999999877554 23344444332222 222788878888888 68999999984
No 144
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=20.87 E-value=1.3e+02 Score=21.29 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=27.0
Q ss_pred EEeCCCcEEEEEEEeCCceeEEEEeechhhHhc
Q 039963 518 IGMPPGGWVAIRFVANNPGIWFMHCHLDSHLTW 550 (578)
Q Consensus 518 v~vpp~~~~~irf~adnpG~w~~HCHil~H~d~ 550 (578)
|..+.|....++++...-..+=+||..+.|.+.
T Consensus 13 v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 13 VKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred EEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 334668888888888888899999999999764
No 145
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=20.33 E-value=3.1e+02 Score=22.84 Aligned_cols=61 Identities=20% Similarity=0.342 Sum_probs=38.5
Q ss_pred EEEEecC-cEEEEEEEEcCCCCcEEEEEeCceeEEEeecCcc-----------cceeEeeEEEEccCceEEEEEEeC
Q 039963 219 RFQVEAG-ETVLLRIINAAMNQELFFGVANHNLTVVGVDTSY-----------TKAFSTSVIMIAPGQTTNVLLTAD 283 (578)
Q Consensus 219 ~l~v~~G-~~~rlrliN~~~~~~~~~~l~gh~~~via~DG~~-----------~~p~~~d~v~l~pger~dv~v~~~ 283 (578)
.+.+.+| +++.+.+.|.| .+++.+--| ++..+++..+ +.=....++..-|||+.+|.+..-
T Consensus 12 ~I~ln~gr~~~~l~V~NtG-DRPIQVGSH---yHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 84 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTG-DRPIQVGSH---FHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAI 84 (101)
T ss_pred CEEeCCCCcEEEEEEEeCC-CcceEEccc---cchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEc
Confidence 3667777 67899999999 666554433 3333333322 211134578888999998888754
Done!