Query 039964
Match_columns 175
No_of_seqs 250 out of 2601
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.7 3.3E-17 7E-22 141.9 11.3 82 2-83 422-504 (623)
2 PLN00113 leucine-rich repeat r 99.6 9.4E-15 2E-19 132.0 9.3 83 1-83 502-585 (968)
3 PLN00113 leucine-rich repeat r 99.4 5.5E-13 1.2E-17 120.6 10.3 82 2-83 527-609 (968)
4 PLN03150 hypothetical protein; 99.4 8.4E-13 1.8E-17 114.6 6.8 91 1-91 445-538 (623)
5 PF13855 LRR_8: Leucine rich r 99.0 3.3E-10 7.1E-15 69.1 3.3 58 1-58 4-61 (61)
6 KOG0617 Ras suppressor protein 98.8 7.6E-10 1.6E-14 80.8 -0.2 80 2-83 37-116 (264)
7 PF13855 LRR_8: Leucine rich r 98.8 3.6E-09 7.8E-14 64.4 2.7 60 22-81 1-61 (61)
8 PF14580 LRR_9: Leucine-rich r 98.7 1.8E-08 4E-13 74.1 4.6 78 2-82 46-126 (175)
9 KOG0617 Ras suppressor protein 98.7 3.7E-09 8E-14 77.3 0.6 56 2-59 60-115 (264)
10 KOG0472 Leucine-rich repeat pr 98.6 1.8E-08 4E-13 81.9 3.3 80 2-82 439-541 (565)
11 KOG0444 Cytoskeletal regulator 98.6 8.7E-09 1.9E-13 88.0 -0.3 79 1-81 106-185 (1255)
12 PF12799 LRR_4: Leucine Rich r 98.4 1.6E-07 3.6E-12 53.4 2.8 37 22-59 1-37 (44)
13 KOG1259 Nischarin, modulator o 98.4 7.5E-08 1.6E-12 76.0 0.5 76 2-80 288-363 (490)
14 PF14580 LRR_9: Leucine-rich r 98.4 1.4E-07 3E-12 69.5 1.7 80 1-84 22-103 (175)
15 KOG0472 Leucine-rich repeat pr 98.4 1.1E-07 2.4E-12 77.4 0.9 77 3-82 233-310 (565)
16 KOG4194 Membrane glycoprotein 98.3 5.1E-08 1.1E-12 82.6 -1.4 82 3-84 322-407 (873)
17 KOG0444 Cytoskeletal regulator 98.3 1.3E-07 2.8E-12 81.0 0.8 82 3-86 83-167 (1255)
18 KOG4194 Membrane glycoprotein 98.3 1.8E-07 4E-12 79.4 0.3 63 2-64 273-335 (873)
19 KOG0618 Serine/threonine phosp 98.2 1.9E-07 4.1E-12 82.5 -0.1 77 1-79 386-486 (1081)
20 PF12799 LRR_4: Leucine Rich r 98.2 9E-07 2E-11 50.3 2.7 37 1-39 4-40 (44)
21 KOG4579 Leucine-rich repeat (L 98.2 1.9E-07 4.2E-12 65.9 -1.4 77 2-80 57-134 (177)
22 KOG0618 Serine/threonine phosp 98.1 3.8E-07 8.3E-12 80.6 -0.7 80 2-83 363-466 (1081)
23 KOG1859 Leucine-rich repeat pr 98.1 1.3E-07 2.9E-12 81.9 -4.2 80 1-83 190-293 (1096)
24 PRK15370 E3 ubiquitin-protein 98.1 9.8E-06 2.1E-10 72.0 6.7 57 23-84 242-298 (754)
25 KOG0532 Leucine-rich repeat (L 98.0 1.2E-06 2.6E-11 74.1 -0.7 83 2-87 147-252 (722)
26 PRK15387 E3 ubiquitin-protein 98.0 6.5E-06 1.4E-10 73.2 3.7 36 48-84 424-460 (788)
27 PRK15370 E3 ubiquitin-protein 97.9 2.1E-05 4.6E-10 69.9 6.3 77 2-86 203-279 (754)
28 KOG4579 Leucine-rich repeat (L 97.9 8.6E-07 1.9E-11 62.6 -2.2 79 1-82 80-159 (177)
29 PLN03210 Resistant to P. syrin 97.9 3.2E-05 7E-10 71.9 7.3 77 2-79 638-714 (1153)
30 PLN03210 Resistant to P. syrin 97.9 2.4E-05 5.1E-10 72.9 6.4 61 2-63 782-842 (1153)
31 COG4886 Leucine-rich repeat (L 97.9 7.3E-06 1.6E-10 67.4 2.3 79 2-82 120-199 (394)
32 PRK15387 E3 ubiquitin-protein 97.9 9.5E-06 2.1E-10 72.1 3.1 58 2-64 406-463 (788)
33 KOG1259 Nischarin, modulator o 97.9 3.6E-06 7.8E-11 66.7 0.3 77 1-81 310-386 (490)
34 KOG4237 Extracellular matrix p 97.8 5.8E-06 1.3E-10 67.4 1.1 81 1-81 277-358 (498)
35 cd00116 LRR_RI Leucine-rich re 97.8 9.6E-06 2.1E-10 64.3 1.4 38 22-59 137-178 (319)
36 cd00116 LRR_RI Leucine-rich re 97.8 1.2E-05 2.6E-10 63.8 1.7 83 1-83 140-235 (319)
37 KOG0532 Leucine-rich repeat (L 97.7 4.5E-06 9.7E-11 70.8 -1.4 82 2-86 79-160 (722)
38 KOG4658 Apoptotic ATPase [Sign 97.7 2.3E-05 5E-10 70.8 2.5 77 1-78 574-651 (889)
39 COG4886 Leucine-rich repeat (L 97.6 1.9E-05 4.2E-10 64.9 0.7 76 1-79 143-219 (394)
40 KOG0531 Protein phosphatase 1, 97.4 8.3E-05 1.8E-09 61.9 2.0 77 2-82 99-175 (414)
41 KOG1859 Leucine-rich repeat pr 97.4 2.8E-05 6.1E-10 67.9 -1.1 75 4-82 170-245 (1096)
42 KOG4237 Extracellular matrix p 97.3 2.4E-05 5.1E-10 63.9 -1.7 62 2-64 71-133 (498)
43 PF00560 LRR_1: Leucine Rich R 97.1 0.00018 4E-09 34.4 0.9 21 23-44 1-21 (22)
44 KOG1644 U2-associated snRNP A' 97.1 0.00073 1.6E-08 50.8 4.0 58 23-82 43-101 (233)
45 KOG0531 Protein phosphatase 1, 96.8 0.00054 1.2E-08 57.0 1.3 79 3-84 77-155 (414)
46 KOG4658 Apoptotic ATPase [Sign 96.7 0.001 2.2E-08 60.4 2.3 81 2-83 549-633 (889)
47 KOG1644 U2-associated snRNP A' 96.7 0.0018 3.8E-08 48.8 3.2 80 2-84 46-128 (233)
48 KOG3207 Beta-tubulin folding c 96.4 0.00044 9.6E-09 57.2 -1.5 34 2-35 150-185 (505)
49 PF00560 LRR_1: Leucine Rich R 96.4 0.0015 3.1E-08 31.2 0.8 20 1-21 3-22 (22)
50 KOG2739 Leucine-rich acidic nu 96.1 0.0036 7.7E-08 48.6 2.1 63 17-79 60-126 (260)
51 KOG2982 Uncharacterized conser 95.8 0.0031 6.7E-08 50.3 0.8 33 3-35 76-110 (418)
52 KOG3207 Beta-tubulin folding c 95.7 0.0027 5.8E-08 52.8 -0.0 60 21-80 221-282 (505)
53 PF13504 LRR_7: Leucine rich r 95.5 0.0072 1.6E-07 26.9 1.0 13 47-59 2-14 (17)
54 smart00370 LRR Leucine-rich re 94.6 0.028 6E-07 27.6 1.8 18 22-40 2-19 (26)
55 smart00369 LRR_TYP Leucine-ric 94.6 0.028 6E-07 27.6 1.8 18 22-40 2-19 (26)
56 PF04478 Mid2: Mid2 like cell 94.2 0.043 9.3E-07 39.2 2.6 15 118-132 50-64 (154)
57 KOG2739 Leucine-rich acidic nu 93.9 0.036 7.8E-07 43.1 1.9 69 12-82 33-104 (260)
58 PF08693 SKG6: Transmembrane a 93.7 0.086 1.9E-06 28.9 2.7 27 116-142 11-37 (40)
59 KOG2982 Uncharacterized conser 93.7 0.041 8.9E-07 44.1 1.9 58 21-78 70-130 (418)
60 PRK15386 type III secretion pr 93.2 0.21 4.5E-06 41.8 5.4 56 1-64 55-112 (426)
61 KOG0473 Leucine-rich repeat pr 92.8 0.004 8.7E-08 48.0 -4.7 54 3-58 70-123 (326)
62 KOG2123 Uncharacterized conser 92.8 0.0068 1.5E-07 47.9 -3.6 77 3-84 24-103 (388)
63 PF13516 LRR_6: Leucine Rich r 91.8 0.033 7.1E-07 26.8 -0.7 16 22-37 2-17 (24)
64 PF01102 Glycophorin_A: Glycop 91.6 0.067 1.5E-06 37.0 0.5 29 117-145 64-92 (122)
65 KOG0473 Leucine-rich repeat pr 91.3 0.022 4.8E-07 44.1 -2.3 77 1-79 45-121 (326)
66 smart00364 LRR_BAC Leucine-ric 89.7 0.18 4E-06 25.0 1.0 13 23-35 3-15 (26)
67 KOG3665 ZYG-1-like serine/thre 88.4 0.52 1.1E-05 42.1 3.5 42 41-82 215-263 (699)
68 PF02439 Adeno_E3_CR2: Adenovi 87.3 0.34 7.4E-06 26.2 1.1 12 121-132 7-18 (38)
69 KOG2123 Uncharacterized conser 86.8 0.12 2.6E-06 41.1 -1.2 61 1-64 44-106 (388)
70 PRK15386 type III secretion pr 86.5 1.4 3.1E-05 37.0 4.8 11 22-32 94-104 (426)
71 KOG3665 ZYG-1-like serine/thre 86.3 0.25 5.5E-06 44.1 0.4 58 2-59 126-186 (699)
72 KOG3763 mRNA export factor TAP 86.2 0.44 9.5E-06 41.0 1.7 62 21-84 217-285 (585)
73 PF06697 DUF1191: Protein of u 85.9 2.6 5.7E-05 33.3 5.8 37 116-152 213-249 (278)
74 PTZ00382 Variant-specific surf 85.7 0.65 1.4E-05 30.7 2.1 15 116-130 65-79 (96)
75 PF02439 Adeno_E3_CR2: Adenovi 85.0 0.62 1.4E-05 25.2 1.4 29 116-144 6-34 (38)
76 smart00368 LRR_RI Leucine rich 85.0 0.78 1.7E-05 22.9 1.7 14 46-59 2-15 (28)
77 PF04478 Mid2: Mid2 like cell 84.6 1.2 2.7E-05 31.9 3.1 34 110-144 46-79 (154)
78 smart00365 LRR_SD22 Leucine-ri 84.3 0.94 2E-05 22.4 1.8 15 45-59 1-15 (26)
79 COG5238 RNA1 Ran GTPase-activa 83.9 1.1 2.3E-05 35.8 2.9 79 2-81 34-132 (388)
80 KOG1909 Ran GTPase-activating 81.1 0.77 1.7E-05 37.5 1.1 41 18-58 209-253 (382)
81 PF15102 TMEM154: TMEM154 prot 80.3 1.4 3.1E-05 31.3 2.1 8 139-146 81-88 (146)
82 KOG1909 Ran GTPase-activating 78.6 0.96 2.1E-05 36.9 0.9 81 1-81 216-310 (382)
83 PF08374 Protocadherin: Protoc 78.0 2.7 5.8E-05 31.9 3.1 24 116-139 37-60 (221)
84 COG5238 RNA1 Ran GTPase-activa 75.0 3.5 7.6E-05 33.0 3.1 40 19-58 89-132 (388)
85 PF13908 Shisa: Wnt and FGF in 74.1 6.1 0.00013 29.0 4.1 14 116-129 78-91 (179)
86 PF07204 Orthoreo_P10: Orthore 71.6 2.8 6E-05 27.5 1.5 28 116-143 41-68 (98)
87 PF15345 TMEM51: Transmembrane 71.3 11 0.00024 28.9 5.0 6 122-127 65-70 (233)
88 PF14575 EphA2_TM: Ephrin type 71.0 2 4.4E-05 27.0 0.8 21 122-142 6-26 (75)
89 PF01299 Lamp: Lysosome-associ 67.2 2.6 5.6E-05 33.8 0.9 11 119-129 272-282 (306)
90 PF01034 Syndecan: Syndecan do 66.1 2.1 4.5E-05 26.1 0.1 14 118-131 14-27 (64)
91 PF12877 DUF3827: Domain of un 65.6 5.9 0.00013 34.9 2.8 25 114-138 267-291 (684)
92 PF04971 Lysis_S: Lysis protei 65.4 4.5 9.7E-05 24.9 1.5 30 116-145 32-61 (68)
93 PF02480 Herpes_gE: Alphaherpe 64.5 2.2 4.7E-05 36.1 0.0 8 142-149 379-386 (439)
94 KOG2120 SCF ubiquitin ligase, 63.5 3.4 7.4E-05 33.5 0.9 59 18-78 309-372 (419)
95 PF15050 SCIMP: SCIMP protein 63.4 3.5 7.5E-05 28.3 0.8 12 133-144 23-34 (133)
96 KOG2120 SCF ubiquitin ligase, 62.8 1 2.2E-05 36.4 -2.1 57 5-61 217-275 (419)
97 PTZ00370 STEVOR; Provisional 60.1 6 0.00013 31.4 1.7 6 138-143 277-282 (296)
98 TIGR00864 PCC polycystin catio 59.7 6.8 0.00015 40.2 2.4 32 4-35 1-32 (2740)
99 PF12768 Rax2: Cortical protei 59.7 9.7 0.00021 30.3 2.9 11 116-126 226-236 (281)
100 PRK00523 hypothetical protein; 58.9 7.8 0.00017 24.1 1.7 35 123-157 9-43 (72)
101 PF12273 RCR: Chitin synthesis 58.3 6.3 0.00014 27.4 1.4 12 138-149 18-29 (130)
102 PRK01844 hypothetical protein; 56.3 9.4 0.0002 23.8 1.8 36 124-159 9-44 (72)
103 TIGR00864 PCC polycystin catio 53.6 7.6 0.00016 39.9 1.6 32 28-59 1-32 (2740)
104 PF07213 DAP10: DAP10 membrane 53.3 5.9 0.00013 25.1 0.6 34 117-150 34-67 (79)
105 PF05808 Podoplanin: Podoplani 53.2 4.4 9.6E-05 29.3 0.0 32 116-147 128-160 (162)
106 PF14610 DUF4448: Protein of u 53.1 11 0.00024 27.9 2.1 22 118-139 158-179 (189)
107 PF08114 PMP1_2: ATPase proteo 52.5 15 0.00033 20.2 2.0 12 135-146 25-36 (43)
108 PF14991 MLANA: Protein melan- 52.1 3.6 7.9E-05 27.9 -0.5 11 131-141 39-49 (118)
109 PF13306 LRR_5: Leucine rich r 51.5 36 0.00078 22.6 4.4 36 18-55 31-67 (129)
110 PF12191 stn_TNFRSF12A: Tumour 51.0 8.5 0.00018 26.7 1.1 6 85-90 59-64 (129)
111 PF03302 VSP: Giardia variant- 50.9 37 0.00079 28.4 5.0 16 116-131 366-381 (397)
112 PF11770 GAPT: GRB2-binding ad 48.6 9.2 0.0002 27.4 1.0 23 121-143 11-33 (158)
113 PF06365 CD34_antigen: CD34/Po 47.0 28 0.00062 26.3 3.4 8 118-125 102-109 (202)
114 PF00558 Vpu: Vpu protein; In 47.0 18 0.00038 23.2 2.0 7 149-155 37-43 (81)
115 PF13908 Shisa: Wnt and FGF in 47.0 14 0.00029 27.1 1.7 21 117-137 75-95 (179)
116 PTZ00382 Variant-specific surf 45.5 21 0.00046 23.5 2.3 14 115-128 68-81 (96)
117 PF15179 Myc_target_1: Myc tar 44.7 15 0.00033 27.2 1.7 24 117-140 24-47 (197)
118 COG3115 ZipA Cell division pro 43.2 15 0.00032 29.5 1.5 32 120-151 7-38 (324)
119 PF01102 Glycophorin_A: Glycop 42.8 13 0.00029 25.7 1.1 31 114-145 65-95 (122)
120 TIGR02205 septum_zipA cell div 42.1 13 0.00029 29.6 1.1 32 120-151 5-36 (284)
121 PHA03099 epidermal growth fact 41.6 18 0.00038 25.3 1.5 28 119-146 102-129 (139)
122 PF10873 DUF2668: Protein of u 38.4 33 0.00072 24.4 2.5 22 117-138 61-82 (155)
123 smart00367 LRR_CC Leucine-rich 38.0 25 0.00055 16.7 1.4 11 46-56 2-12 (26)
124 PF08374 Protocadherin: Protoc 37.4 56 0.0012 25.0 3.7 32 114-145 38-69 (221)
125 PF06084 Cytomega_TRL10: Cytom 36.3 45 0.00098 22.8 2.8 22 151-172 99-120 (150)
126 PF05545 FixQ: Cbb3-type cytoc 35.2 62 0.0013 18.2 2.9 10 139-148 29-38 (49)
127 PF12301 CD99L2: CD99 antigen 35.0 33 0.00071 25.2 2.1 32 116-148 114-145 (169)
128 PRK01741 cell division protein 32.4 34 0.00075 27.8 2.0 34 120-153 6-39 (332)
129 PRK03427 cell division protein 32.3 27 0.00059 28.4 1.5 27 120-146 8-34 (333)
130 PF12768 Rax2: Cortical protei 31.2 67 0.0015 25.5 3.5 38 111-148 225-262 (281)
131 PF12259 DUF3609: Protein of u 30.3 66 0.0014 26.6 3.4 32 119-150 299-330 (361)
132 PHA03283 envelope glycoprotein 29.4 78 0.0017 27.5 3.7 36 117-152 399-434 (542)
133 PF12606 RELT: Tumour necrosis 28.4 59 0.0013 18.7 2.0 13 142-154 24-36 (50)
134 PF06809 NPDC1: Neural prolife 28.1 2E+02 0.0044 23.4 5.6 22 119-140 200-221 (341)
135 PF03229 Alpha_GJ: Alphavirus 27.0 90 0.002 21.4 3.0 12 118-129 84-95 (126)
136 PF03672 UPF0154: Uncharacteri 26.2 98 0.0021 18.8 2.8 15 135-149 13-27 (64)
137 PRK04335 cell division protein 26.0 42 0.00091 27.2 1.5 30 119-148 6-35 (313)
138 COG3763 Uncharacterized protei 25.8 63 0.0014 20.0 1.9 16 133-148 18-33 (71)
139 PF15069 FAM163: FAM163 family 24.9 96 0.0021 22.1 3.0 9 119-127 8-16 (143)
140 KOG4308 LRR-containing protein 24.2 7.8 0.00017 33.2 -3.1 38 22-59 262-303 (478)
141 PTZ00208 65 kDa invariant surf 23.9 32 0.00069 28.8 0.5 16 137-152 406-421 (436)
142 TIGR03141 cytochro_ccmD heme e 23.7 99 0.0021 17.1 2.4 9 143-151 29-37 (45)
143 TIGR03546 conserved hypothetic 23.6 69 0.0015 23.1 2.1 30 122-151 114-143 (154)
144 PF10577 UPF0560: Uncharacteri 23.3 32 0.00069 31.4 0.4 22 118-139 274-295 (807)
145 PRK11677 hypothetical protein; 22.9 1.9E+02 0.0041 20.4 4.2 9 124-132 8-16 (134)
146 PF06295 DUF1043: Protein of u 22.9 2.6E+02 0.0057 19.2 5.1 6 125-130 5-10 (128)
147 PF14584 DUF4446: Protein of u 22.8 87 0.0019 22.5 2.5 9 142-150 27-35 (151)
148 PF05283 MGC-24: Multi-glycosy 22.1 72 0.0016 23.8 2.0 22 120-141 161-182 (186)
149 COG3889 Predicted solute bindi 21.9 1.4E+02 0.003 27.5 4.0 22 122-143 849-870 (872)
150 PF10725 DUF2517: Protein of u 21.6 96 0.0021 18.6 2.1 30 135-164 25-54 (63)
151 PTZ00046 rifin; Provisional 21.4 46 0.001 27.5 1.0 9 138-146 335-343 (358)
152 PF02060 ISK_Channel: Slow vol 21.2 49 0.0011 23.0 0.9 29 117-145 44-72 (129)
153 PF14914 LRRC37AB_C: LRRC37A/B 21.1 53 0.0012 23.5 1.1 28 118-145 121-148 (154)
154 TIGR01477 RIFIN variant surfac 21.0 47 0.001 27.3 1.0 10 137-146 329-338 (353)
155 PHA03265 envelope glycoprotein 20.9 84 0.0018 26.0 2.3 11 129-139 360-370 (402)
156 PF11286 DUF3087: Protein of u 20.5 1.8E+02 0.0039 21.3 3.8 11 141-151 69-79 (165)
157 PF07271 Cytadhesin_P30: Cytad 20.3 2.1E+02 0.0046 22.7 4.3 15 120-134 73-87 (279)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.72 E-value=3.3e-17 Score=141.86 Aligned_cols=82 Identities=39% Similarity=0.593 Sum_probs=50.5
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~ 80 (175)
.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+. ..+.+|+.+++++|.
T Consensus 422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 3566666666666666666666666666666666666666666666666666666666666654 455556666666665
Q ss_pred CCC
Q 039964 81 LCG 83 (175)
Q Consensus 81 l~~ 83 (175)
+.|
T Consensus 502 l~g 504 (623)
T PLN03150 502 LSG 504 (623)
T ss_pred ccc
Confidence 443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.56 E-value=9.4e-15 Score=132.02 Aligned_cols=83 Identities=39% Similarity=0.520 Sum_probs=70.2
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
+.|+|++|.+.|.+|+.+..+++|+.|+|++|.++|.+|..+..+++|+.|||++|+++|.+|.. ..+.++..+++++|
T Consensus 502 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 36888888888888888888888888888888888888888888888888888888888888876 56777888888888
Q ss_pred cCCC
Q 039964 80 ELCG 83 (175)
Q Consensus 80 ~l~~ 83 (175)
.+.|
T Consensus 582 ~l~~ 585 (968)
T PLN00113 582 HLHG 585 (968)
T ss_pred ccee
Confidence 7665
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.44 E-value=5.5e-13 Score=120.63 Aligned_cols=82 Identities=38% Similarity=0.585 Sum_probs=47.1
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc-c
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN-E 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N-~ 80 (175)
+|+|++|.++|.+|..+..+++|+.|||++|+++|.+|..+..+++|+.|++++|+++|.+|....+..+....+.+| .
T Consensus 527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNID 606 (968)
T ss_pred EEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcc
Confidence 455555555555555555555555555555555555555555555555555555555555555555555555555555 4
Q ss_pred CCC
Q 039964 81 LCG 83 (175)
Q Consensus 81 l~~ 83 (175)
+||
T Consensus 607 lc~ 609 (968)
T PLN00113 607 LCG 609 (968)
T ss_pred ccC
Confidence 554
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.37 E-value=8.4e-13 Score=114.56 Aligned_cols=91 Identities=35% Similarity=0.641 Sum_probs=81.0
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC--cccCCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~--~~~~~l~~l~~~~ 78 (175)
+.|+|++|.|+|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+|++|+++|.+|.. ....++..+++.+
T Consensus 445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 47999999999999999999999999999999999999999999999999999999999999986 2234566788999
Q ss_pred c-cCCCCCCCCCCC
Q 039964 79 N-ELCGLPLPNKCP 91 (175)
Q Consensus 79 N-~l~~~p~~~~c~ 91 (175)
| .+|+.|....|.
T Consensus 525 N~~lc~~p~l~~C~ 538 (623)
T PLN03150 525 NAGLCGIPGLRACG 538 (623)
T ss_pred CccccCCCCCCCCc
Confidence 9 899877655664
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=3.3e-10 Score=69.07 Aligned_cols=58 Identities=33% Similarity=0.325 Sum_probs=45.8
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNL 58 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l 58 (175)
++|++++|+++..-+..|..+++|+.||+++|.++...|..|..+++|++|++++|++
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688888888854446778888888888888888865566788888888888888864
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.80 E-value=7.6e-10 Score=80.82 Aligned_cols=80 Identities=29% Similarity=0.398 Sum_probs=64.4
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
.|-||+|.++ .+|+.+.++.+|+.|++++|++. .+|.+++.++.|+.|+++-|.+.-.+-..+.++.+..+++..|++
T Consensus 37 rLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 37 RLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred hhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccc
Confidence 3668899998 78888999999999999999998 788889999999999999988873333337777778887777765
Q ss_pred CC
Q 039964 82 CG 83 (175)
Q Consensus 82 ~~ 83 (175)
..
T Consensus 115 ~e 116 (264)
T KOG0617|consen 115 NE 116 (264)
T ss_pred cc
Confidence 53
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=3.6e-09 Score=64.43 Aligned_cols=60 Identities=35% Similarity=0.468 Sum_probs=52.1
Q ss_pred cccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCccC
Q 039964 22 KSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNEL 81 (175)
Q Consensus 22 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~l 81 (175)
++|+.|++++|+++...+..+..+++|++|++++|+++...|.. ..+++++.+++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57899999999999544468899999999999999999777766 7888999999999864
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=1.8e-08 Score=74.15 Aligned_cols=78 Identities=29% Similarity=0.376 Sum_probs=23.8
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhh-hCCCCCCEEeccCCcCCCCCCC--CcccCCCCeeeccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSL-SRLSRLSVMDLSYNNLSGKIPS--GTQLQSFNALTYAG 78 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~L~ls~N~l~g~iP~--~~~~~~l~~l~~~~ 78 (175)
.||||+|.++ .++ .+..++.|+.|++++|.++ .++..+ ..+++|++|++++|++...--- ...+++|..+++.+
T Consensus 46 ~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 46 VLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred EEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence 4556666555 332 3555556666666666665 343333 2455666666666655422111 13345555666666
Q ss_pred ccCC
Q 039964 79 NELC 82 (175)
Q Consensus 79 N~l~ 82 (175)
|.+|
T Consensus 123 NPv~ 126 (175)
T PF14580_consen 123 NPVC 126 (175)
T ss_dssp -GGG
T ss_pred Cccc
Confidence 6555
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.69 E-value=3.7e-09 Score=77.26 Aligned_cols=56 Identities=25% Similarity=0.429 Sum_probs=44.0
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS 59 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~ 59 (175)
+|++++|++. .+|.+++.++.|+.|+++-|.|. .+|..|+.++.|+.|||++|+++
T Consensus 60 vln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 60 VLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred hhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccc
Confidence 5777888887 67888888888888888888877 67777888888888888777765
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.65 E-value=1.8e-08 Score=81.93 Aligned_cols=80 Identities=28% Similarity=0.428 Sum_probs=58.8
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccC----------------------ccCchh-hhCCCCCCEEeccCCcC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFF----------------------GGISSS-LSRLSRLSVMDLSYNNL 58 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~----------------------g~iP~~-~~~l~~L~~L~ls~N~l 58 (175)
.|+|++|-+. .+|.+++.+..|+.||+|+|.|. |.+|.+ +.+|.+|.+|||.+|.+
T Consensus 439 ~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 439 FLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred eeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence 5777777776 68888888888888888887765 233333 66777888888888888
Q ss_pred CCCCCCCcccCCCCeeeccCccCC
Q 039964 59 SGKIPSGTQLQSFNALTYAGNELC 82 (175)
Q Consensus 59 ~g~iP~~~~~~~l~~l~~~~N~l~ 82 (175)
...+|..+.++++.++.++||.+.
T Consensus 518 q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 518 QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhCChhhccccceeEEEecCCccC
Confidence 766666677888888888888665
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.58 E-value=8.7e-09 Score=88.04 Aligned_cols=79 Identities=28% Similarity=0.302 Sum_probs=60.1
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchh-hhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSS-LSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N 79 (175)
++||||+|+|. ..|..+..-.++-.|+||+|++. +||.+ +.+++.|-.||||+|.|...+|....+..|+.+.+++|
T Consensus 106 t~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 106 TILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred eeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 36788888887 67887777778888888888887 67765 45788888888888888877776666677777777777
Q ss_pred cC
Q 039964 80 EL 81 (175)
Q Consensus 80 ~l 81 (175)
.|
T Consensus 184 PL 185 (1255)
T KOG0444|consen 184 PL 185 (1255)
T ss_pred hh
Confidence 54
No 12
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.45 E-value=1.6e-07 Score=53.35 Aligned_cols=37 Identities=43% Similarity=0.581 Sum_probs=29.2
Q ss_pred cccceeeccccccCccCchhhhCCCCCCEEeccCCcCC
Q 039964 22 KSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS 59 (175)
Q Consensus 22 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~ 59 (175)
++|+.|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46788888888888 67777888888888888888877
No 13
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.38 E-value=7.5e-08 Score=76.03 Aligned_cols=76 Identities=28% Similarity=0.258 Sum_probs=63.8
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
.||||+|.++ .|-++..-+|.++.|++|+|.+. .+. +++.+++|+.||||+|.|+...-....+.+...+.+++|.
T Consensus 288 elDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 288 ELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 5899999998 78999999999999999999997 554 4899999999999999998554444566777777777773
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.38 E-value=1.4e-07 Score=69.50 Aligned_cols=80 Identities=30% Similarity=0.401 Sum_probs=28.7
Q ss_pred CEEEeecCccccCCChhhc-CCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITPKIG-QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~ 78 (175)
+.|+|++|.++ .| +.++ .+.+|+.||||+|.++ .++ .+..++.|++|++++|.++..-+.. ..+++|..+++++
T Consensus 22 ~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 22 RELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 46899999998 45 4566 5889999999999999 665 4888999999999999999543322 3578999999999
Q ss_pred ccCCCC
Q 039964 79 NELCGL 84 (175)
Q Consensus 79 N~l~~~ 84 (175)
|.+...
T Consensus 98 N~I~~l 103 (175)
T PF14580_consen 98 NKISDL 103 (175)
T ss_dssp S---SC
T ss_pred CcCCCh
Confidence 987643
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.36 E-value=1.1e-07 Score=77.44 Aligned_cols=77 Identities=27% Similarity=0.284 Sum_probs=66.4
Q ss_pred EEeecCccccCCChhhc-CCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 3 LACVHFSLTGQITPKIG-QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 3 L~Ls~N~l~g~iP~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
|+++.|+++ .+|.+.. +++++..|||..|+++ ++|+.+.-+.+|+.||+|+|.+++.+++.+.+ .+..+.+.||.+
T Consensus 233 lh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 233 LHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 455667776 6777766 8999999999999999 89999999999999999999999888887777 788889999976
Q ss_pred C
Q 039964 82 C 82 (175)
Q Consensus 82 ~ 82 (175)
.
T Consensus 310 r 310 (565)
T KOG0472|consen 310 R 310 (565)
T ss_pred H
Confidence 4
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.34 E-value=5.1e-08 Score=82.62 Aligned_cols=82 Identities=28% Similarity=0.260 Sum_probs=46.0
Q ss_pred EEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC----cccCCCCeeeccC
Q 039964 3 LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG----TQLQSFNALTYAG 78 (175)
Q Consensus 3 L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~----~~~~~l~~l~~~~ 78 (175)
|+||.|+++..-+..|..|.+|+.|+|++|.++-.--..|..+++|+.|||.+|.+++.|-+. ..+++|+.+.+.|
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence 444444444333334444444444444444444222223555777778888888887777664 2356677777777
Q ss_pred ccCCCC
Q 039964 79 NELCGL 84 (175)
Q Consensus 79 N~l~~~ 84 (175)
|++...
T Consensus 402 Nqlk~I 407 (873)
T KOG4194|consen 402 NQLKSI 407 (873)
T ss_pred ceeeec
Confidence 766543
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.33 E-value=1.3e-07 Score=81.04 Aligned_cols=82 Identities=33% Similarity=0.431 Sum_probs=64.0
Q ss_pred EEeecCcccc-CCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC--cccCCCCeeeccCc
Q 039964 3 LACVHFSLTG-QITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNALTYAGN 79 (175)
Q Consensus 3 L~Ls~N~l~g-~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~--~~~~~l~~l~~~~N 79 (175)
+.+.+|+|.. .||..+..|..|..||||+|+|. .+|..+..-+.+-.|+||+|++. .||.. ..+..|..++++.|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 4455666653 38888888888889999999988 88888888888888999999887 66664 55667778889999
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.|...|+
T Consensus 161 rLe~LPP 167 (1255)
T KOG0444|consen 161 RLEMLPP 167 (1255)
T ss_pred hhhhcCH
Confidence 8876643
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.27 E-value=1.8e-07 Score=79.36 Aligned_cols=63 Identities=27% Similarity=0.116 Sum_probs=42.3
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS 64 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~ 64 (175)
+|+|+.|+++..--.++-+|+.|+.||||+|.+.-.-++++...++|+.||||+|+++...+.
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence 567777777655555566677777777777777655566666677777777777777655544
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.25 E-value=1.9e-07 Score=82.51 Aligned_cols=77 Identities=31% Similarity=0.442 Sum_probs=53.7
Q ss_pred CEEEeecCccccCCCh-hhcCCcccceeeccccccCccCch----------------------hhhCCCCCCEEeccCCc
Q 039964 1 MWLACVHFSLTGQITP-KIGQLKSLDFLDLSRNQFFGGISS----------------------SLSRLSRLSVMDLSYNN 57 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~-~~~~l~~L~~L~Ls~N~l~g~iP~----------------------~~~~l~~L~~L~ls~N~ 57 (175)
++|+|++|+|. .+|. .+.++..|+.|+||+|.|+ .+|. ++..++.|+.+|+|.|+
T Consensus 386 KVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 386 KVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred eeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccch
Confidence 36778888776 5563 4667777777888887776 4444 35667778888888888
Q ss_pred CCC-CCCCCcccCCCCeeeccCc
Q 039964 58 LSG-KIPSGTQLQSFNALTYAGN 79 (175)
Q Consensus 58 l~g-~iP~~~~~~~l~~l~~~~N 79 (175)
|+- .+|.....++|+.++++||
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCC
Confidence 863 3444444477888888888
No 20
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=9e-07 Score=50.28 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=32.7
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGIS 39 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP 39 (175)
++|++++|+++ .+|+++++|++|+.|++++|.++ .+|
T Consensus 4 ~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 4 EELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred eEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 58999999999 79989999999999999999998 554
No 21
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=1.9e-07 Score=65.85 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=60.5
Q ss_pred EEEeecCccccCCChhhcCC-cccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQL-KSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
..+||+|.|. ..|+.|... +.++.|+|++|.++ .+|.++..++.|+.|++++|.+...+-....+.+|..++..+|.
T Consensus 57 ~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 57 KISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred EEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 3588999998 678777655 48899999999999 89999999999999999999998554443445666666666663
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.13 E-value=3.8e-07 Score=80.63 Aligned_cols=80 Identities=29% Similarity=0.362 Sum_probs=64.9
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCch-hhhCCCCCCEEeccCCcCCCCCCC----------------
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISS-SLSRLSRLSVMDLSYNNLSGKIPS---------------- 64 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~L~ls~N~l~g~iP~---------------- 64 (175)
.|.|.+|.|+..+-+-+-...+|+.|+|++|+|. .+|+ .+.++..|++|+||+|+|+. +|+
T Consensus 363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred HHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCC
Confidence 4678899999888888999999999999999998 7776 47889999999999999984 443
Q ss_pred -------CcccCCCCeeeccCccCCC
Q 039964 65 -------GTQLQSFNALTYAGNELCG 83 (175)
Q Consensus 65 -------~~~~~~l~~l~~~~N~l~~ 83 (175)
..++..++.++++.|.|..
T Consensus 441 ~l~~fPe~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 441 QLLSFPELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ceeechhhhhcCcceEEecccchhhh
Confidence 2345667777888776653
No 23
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=1.3e-07 Score=81.88 Aligned_cols=80 Identities=33% Similarity=0.343 Sum_probs=55.5
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchh----------------------hhCCCCCCEEeccCCcC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSS----------------------LSRLSRLSVMDLSYNNL 58 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~----------------------~~~l~~L~~L~ls~N~l 58 (175)
++||||+|+++. . ..+..++.|.+|||++|.|. .+|.. +.+|.+|+.||+++|-+
T Consensus 190 e~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 190 ESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred hhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhh
Confidence 468899999873 3 36788888999999999887 55532 34577777888888877
Q ss_pred CCCCCC--CcccCCCCeeeccCccCCC
Q 039964 59 SGKIPS--GTQLQSFNALTYAGNELCG 83 (175)
Q Consensus 59 ~g~iP~--~~~~~~l~~l~~~~N~l~~ 83 (175)
++.--= ...+..|..+++.||.+|-
T Consensus 267 ~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 267 SEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 643211 1334566778888997763
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.06 E-value=9.8e-06 Score=72.00 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=28.1
Q ss_pred ccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccCCCC
Q 039964 23 SLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELCGL 84 (175)
Q Consensus 23 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l~~~ 84 (175)
+|+.|+|++|++. .+|..+. ++|+.|++++|+++. +|.. ...+|+.+++++|.|.+.
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~-l~~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPEN-LPEELRYLSVYDNSIRTL 298 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccc-cCCCCcEEECCCCccccC
Confidence 3444444444444 3444332 356666666666663 3432 123556666666655544
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.97 E-value=1.2e-06 Score=74.14 Aligned_cols=83 Identities=29% Similarity=0.418 Sum_probs=57.5
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCC----------------------CCEEeccCCcCC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSR----------------------LSVMDLSYNNLS 59 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~----------------------L~~L~ls~N~l~ 59 (175)
+|-+++|+++ .+|++++.+.+|..||.+.|.+. .+|+.++.+.+ |..||+|.|+++
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS 224 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee
Confidence 4566777776 67777777777777777777766 55555444333 557778888877
Q ss_pred CCCCC-CcccCCCCeeeccCccCCCCCCC
Q 039964 60 GKIPS-GTQLQSFNALTYAGNELCGLPLP 87 (175)
Q Consensus 60 g~iP~-~~~~~~l~~l~~~~N~l~~~p~~ 87 (175)
.+|. ...++.|+.+.+++|.|..+|..
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCCChHH
Confidence 4444 36778888899999988877543
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.96 E-value=6.5e-06 Score=73.18 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=20.7
Q ss_pred CCEEeccCCcCCCCCCCC-cccCCCCeeeccCccCCCC
Q 039964 48 LSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNELCGL 84 (175)
Q Consensus 48 L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~l~~~ 84 (175)
|+.|++++|+++ .+|.. ..+.++..+++++|.|++.
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 344455555554 34433 4456677778888877654
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.92 E-value=2.1e-05 Score=69.91 Aligned_cols=77 Identities=21% Similarity=0.313 Sum_probs=49.1
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
.|+|++|.++ .+|..+. .+|+.|++++|+|+ .+|..+. .+|+.|+|++|++. .+|.. ...+|+.+++++|.+
T Consensus 203 ~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~-l~s~L~~L~Ls~N~L 274 (754)
T PRK15370 203 TLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPER-LPSALQSLDLFHNKI 274 (754)
T ss_pred EEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChh-HhCCCCEEECcCCcc
Confidence 4666667666 4665544 46777777777776 5665443 35777777777776 44543 224678888888877
Q ss_pred CCCCC
Q 039964 82 CGLPL 86 (175)
Q Consensus 82 ~~~p~ 86 (175)
...|.
T Consensus 275 ~~LP~ 279 (754)
T PRK15370 275 SCLPE 279 (754)
T ss_pred Ccccc
Confidence 76553
No 28
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=8.6e-07 Score=62.62 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=62.1
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc-
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN- 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N- 79 (175)
+.|||++|.++ .+|.++..++.|+.|+++.|.|. ..|..+..+.++..||...|... .+|.....+++..+.--||
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 35899999998 89999999999999999999999 77888888999999999999887 6666533344433332244
Q ss_pred cCC
Q 039964 80 ELC 82 (175)
Q Consensus 80 ~l~ 82 (175)
.+.
T Consensus 157 pl~ 159 (177)
T KOG4579|consen 157 PLG 159 (177)
T ss_pred ccc
Confidence 443
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.90 E-value=3.2e-05 Score=71.95 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=38.9
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN 79 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N 79 (175)
.|+|+++..-+.+|. +..+++|+.|+|++|..-..+|..+.++++|+.|++++|...+.+|....+.+|..+++++|
T Consensus 638 ~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 638 NIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714 (1153)
T ss_pred EEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCC
Confidence 344444433234442 44455555555555443345555555666666666665444444554444455555555554
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.90 E-value=2.4e-05 Score=72.85 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=43.8
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIP 63 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP 63 (175)
.|+|++|...+.+|..++++++|+.|++++|..-+.+|..+ ++++|+.|++++|.....+|
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 57888887777899999999999999999875445777654 56666666666654333333
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.87 E-value=7.3e-06 Score=67.42 Aligned_cols=79 Identities=37% Similarity=0.482 Sum_probs=38.9
Q ss_pred EEEeecCccccCCChhhcCCc-ccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLK-SLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
.|++.+|.++ .||+....+. +|+.|++++|.+. .+|..+..++.|+.|++++|+++-..+.......+..+++++|.
T Consensus 120 ~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~ 197 (394)
T COG4886 120 SLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK 197 (394)
T ss_pred EEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc
Confidence 3455555555 4555444443 5555555555555 44444555555555555555555332222234444445555544
Q ss_pred CC
Q 039964 81 LC 82 (175)
Q Consensus 81 l~ 82 (175)
+.
T Consensus 198 i~ 199 (394)
T COG4886 198 IS 199 (394)
T ss_pred cc
Confidence 43
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.86 E-value=9.5e-06 Score=72.15 Aligned_cols=58 Identities=28% Similarity=0.193 Sum_probs=46.8
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS 64 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~ 64 (175)
.|++++|.|+ .+|..+ .+|+.|++++|+|+ .+|..+.++++|+.|+|++|.|+|.+|.
T Consensus 406 ~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 406 ELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred EEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 4666777766 366432 45778888999988 8999999999999999999999998776
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.86 E-value=3.6e-06 Score=66.68 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=50.9
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
+.|++|+|.+. .+-. +..|++|+.||||+|.|+ .+-..-..+.+.++|.|+.|.+. .+.....+-++..+++.+|+
T Consensus 310 r~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 310 RRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred eEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhhhhHhhhhheeccccccc
Confidence 47999999997 4444 889999999999999998 44444445566666666666554 22222334445555555554
Q ss_pred C
Q 039964 81 L 81 (175)
Q Consensus 81 l 81 (175)
+
T Consensus 386 I 386 (490)
T KOG1259|consen 386 I 386 (490)
T ss_pred h
Confidence 3
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.83 E-value=5.8e-06 Score=67.39 Aligned_cols=81 Identities=22% Similarity=0.164 Sum_probs=66.3
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
+.|||++|.+++.-+.+|..+..++.|.|..|++.-.--..|.++..|++|+|.+|+++..-|.+ ..+.++..+++-+|
T Consensus 277 ~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 277 RKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred eEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 36889999998888888888889999999999887333446788999999999999999888876 55667888888888
Q ss_pred cC
Q 039964 80 EL 81 (175)
Q Consensus 80 ~l 81 (175)
.+
T Consensus 357 p~ 358 (498)
T KOG4237|consen 357 PF 358 (498)
T ss_pred cc
Confidence 44
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.77 E-value=9.6e-06 Score=64.33 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=16.1
Q ss_pred cccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCC
Q 039964 22 KSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLS 59 (175)
Q Consensus 22 ~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~ 59 (175)
++|+.|++++|.+++. ++..+..++.|++|++++|.++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 4444444444444421 1222333444444444444444
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.75 E-value=1.2e-05 Score=63.82 Aligned_cols=83 Identities=24% Similarity=0.298 Sum_probs=61.8
Q ss_pred CEEEeecCccccC----CChhhcCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCCCCCCC----C-cc
Q 039964 1 MWLACVHFSLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLSGKIPS----G-TQ 67 (175)
Q Consensus 1 ~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~g~iP~----~-~~ 67 (175)
+.|++++|.+++. ++..+..+.+|+.|++++|.+++. ++..+..+++|+.|++++|.+++.... . ..
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~ 219 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS 219 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence 4689999998843 444566778899999999999852 445566778999999999988744322 1 34
Q ss_pred cCCCCeeeccCccCCC
Q 039964 68 LQSFNALTYAGNELCG 83 (175)
Q Consensus 68 ~~~l~~l~~~~N~l~~ 83 (175)
+++++.+++++|.+.+
T Consensus 220 ~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 220 LKSLEVLNLGDNNLTD 235 (319)
T ss_pred cCCCCEEecCCCcCch
Confidence 5678999999887653
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.70 E-value=4.5e-06 Score=70.79 Aligned_cols=82 Identities=26% Similarity=0.344 Sum_probs=57.2
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
.+||+.|++. .+|.++..+..|+.+.|.+|.+. .||..+.++..|..|||+.|+++ ..|....+--|+.+-+++|++
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNKL 155 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCcc
Confidence 3577888887 78887777777777778888777 67777777777777888877777 344333333466677777766
Q ss_pred CCCCC
Q 039964 82 CGLPL 86 (175)
Q Consensus 82 ~~~p~ 86 (175)
...|.
T Consensus 156 ~~lp~ 160 (722)
T KOG0532|consen 156 TSLPE 160 (722)
T ss_pred ccCCc
Confidence 55443
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.67 E-value=2.3e-05 Score=70.76 Aligned_cols=77 Identities=27% Similarity=0.327 Sum_probs=61.6
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~ 78 (175)
++||||+|.=-+.+|+++++|-+|+.|||++..++ .+|..+.++..|.+||+.++.-...+|.. ..+++|+.+.+..
T Consensus 574 rVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 574 RVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred EEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 47899988766689999999999999999999998 88999999999999999887765566655 3367777776533
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.58 E-value=1.9e-05 Score=64.88 Aligned_cols=76 Identities=29% Similarity=0.374 Sum_probs=60.6
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
+.|++++|.+. .+|..+..++.|+.|++++|+++ .+|...+.++.|+.|++++|++. .+|.. .....+..+.+++|
T Consensus 143 ~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 143 KELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred ccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 36889999998 78888999999999999999999 88887778899999999999998 44443 23344666666666
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.38 E-value=8.3e-05 Score=61.89 Aligned_cols=77 Identities=29% Similarity=0.316 Sum_probs=44.8
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
.|++..|.+. .|...+..+++|+.||+++|.++ .+. .+..++.|+.|++++|.++ .++....+..++.+++++|.+
T Consensus 99 ~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 99 ALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSGNLIS-DISGLESLKSLKLLDLSYNRI 174 (414)
T ss_pred eeeccccchh-hcccchhhhhcchheeccccccc-ccc-chhhccchhhheeccCcch-hccCCccchhhhcccCCcchh
Confidence 4666666666 34433556667777777777776 332 2455666666777776665 344433455556666666644
Q ss_pred C
Q 039964 82 C 82 (175)
Q Consensus 82 ~ 82 (175)
.
T Consensus 175 ~ 175 (414)
T KOG0531|consen 175 V 175 (414)
T ss_pred h
Confidence 4
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.36 E-value=2.8e-05 Score=67.92 Aligned_cols=75 Identities=29% Similarity=0.400 Sum_probs=57.2
Q ss_pred EeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCccCC
Q 039964 4 ACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNELC 82 (175)
Q Consensus 4 ~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~l~ 82 (175)
+.+.|.|. ..-+.+.-++.|++|||++|+++ .+. .+..++.|++|||++|.|. .+|.. ..-..|..+.+.+|.+.
T Consensus 170 ~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 170 SFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT 245 (1096)
T ss_pred hcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH
Confidence 45677776 56777888899999999999998 554 7899999999999999998 56654 11123667777777443
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.34 E-value=2.4e-05 Score=63.92 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=43.8
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEec-cCCcCCCCCCC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDL-SYNNLSGKIPS 64 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~l-s~N~l~g~iP~ 64 (175)
.++|..|.++..-|..|+.+++|+.||||+|+++-.-|..|..+.+|..|-+ ++|+++ .+|.
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k 133 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPK 133 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhh
Confidence 5778888888444456788888888888888888666778888777765544 447776 4443
No 43
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.14 E-value=0.00018 Score=34.41 Aligned_cols=21 Identities=48% Similarity=0.708 Sum_probs=13.4
Q ss_pred ccceeeccccccCccCchhhhC
Q 039964 23 SLDFLDLSRNQFFGGISSSLSR 44 (175)
Q Consensus 23 ~L~~L~Ls~N~l~g~iP~~~~~ 44 (175)
+|+.|||++|+++ .+|+++++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566777777776 66665543
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.08 E-value=0.00073 Score=50.77 Aligned_cols=58 Identities=26% Similarity=0.381 Sum_probs=27.5
Q ss_pred ccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCccCC
Q 039964 23 SLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNELC 82 (175)
Q Consensus 23 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~l~ 82 (175)
+...+||++|.+. .++ .+..++.|.+|.|++|.++..-|.. ..++++..+.+.+|+++
T Consensus 43 ~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 3444555555553 222 2444555555555555555444443 23334555555555444
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.78 E-value=0.00054 Score=57.02 Aligned_cols=79 Identities=30% Similarity=0.401 Sum_probs=60.2
Q ss_pred EEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccCC
Q 039964 3 LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNELC 82 (175)
Q Consensus 3 L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l~ 82 (175)
+++..|.+. .+-..+..+.+|+.|++.+|.+. .+...+..+++|++|++++|+++...+ ...+..|..+++.+|.+.
T Consensus 77 l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 77 LNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLIS 153 (414)
T ss_pred hccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcch
Confidence 345566665 34445778899999999999998 555447889999999999999985444 345566889999999766
Q ss_pred CC
Q 039964 83 GL 84 (175)
Q Consensus 83 ~~ 84 (175)
..
T Consensus 154 ~~ 155 (414)
T KOG0531|consen 154 DI 155 (414)
T ss_pred hc
Confidence 54
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.68 E-value=0.001 Score=60.45 Aligned_cols=81 Identities=27% Similarity=0.238 Sum_probs=63.1
Q ss_pred EEEeecCc--cccCCChh-hcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccC
Q 039964 2 WLACVHFS--LTGQITPK-IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAG 78 (175)
Q Consensus 2 ~L~Ls~N~--l~g~iP~~-~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~ 78 (175)
.|-+..|. +. .++.+ |..++.|..||||+|.=-+.+|..++.|-+|++||+++..++..++....+..|..|++..
T Consensus 549 tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 549 TLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred eEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence 45566664 33 45544 7789999999999877667999999999999999999999984444447888899999887
Q ss_pred c-cCCC
Q 039964 79 N-ELCG 83 (175)
Q Consensus 79 N-~l~~ 83 (175)
+ .+..
T Consensus 628 ~~~l~~ 633 (889)
T KOG4658|consen 628 TGRLES 633 (889)
T ss_pred cccccc
Confidence 7 4443
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.67 E-value=0.0018 Score=48.76 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=60.9
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhh-CCCCCCEEeccCCcCCC--CCCCCcccCCCCeeeccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLS-RLSRLSVMDLSYNNLSG--KIPSGTQLQSFNALTYAG 78 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~ls~N~l~g--~iP~~~~~~~l~~l~~~~ 78 (175)
.+||++|.+. .++ -|..++.|..|.|++|.++ .|-+.+. -++.|+.|.|.+|.+.. .+-....++.|+.+.+-+
T Consensus 46 ~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 46 AIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred eecccccchh-hcc-cCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 5789999885 443 4788899999999999999 5544454 45789999999998862 233335667889999999
Q ss_pred ccCCCC
Q 039964 79 NELCGL 84 (175)
Q Consensus 79 N~l~~~ 84 (175)
|..|..
T Consensus 123 Npv~~k 128 (233)
T KOG1644|consen 123 NPVEHK 128 (233)
T ss_pred Cchhcc
Confidence 987754
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.00044 Score=57.22 Aligned_cols=34 Identities=26% Similarity=0.161 Sum_probs=19.9
Q ss_pred EEEeecCccccCCC--hhhcCCcccceeeccccccC
Q 039964 2 WLACVHFSLTGQIT--PKIGQLKSLDFLDLSRNQFF 35 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP--~~~~~l~~L~~L~Ls~N~l~ 35 (175)
.||||+|-|...-| .-..+|++|+.|+||.|.|.
T Consensus 150 ~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 150 DLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred eecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 46667766653222 33456667777777777664
No 49
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.36 E-value=0.0015 Score=31.19 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=16.7
Q ss_pred CEEEeecCccccCCChhhcCC
Q 039964 1 MWLACVHFSLTGQITPKIGQL 21 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l 21 (175)
++|||++|+++ .||++|++|
T Consensus 3 ~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 3 EYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp SEEEETSSEES-EEGTTTTT-
T ss_pred cEEECCCCcCE-eCChhhcCC
Confidence 58999999999 899887653
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.11 E-value=0.0036 Score=48.57 Aligned_cols=63 Identities=24% Similarity=0.365 Sum_probs=42.0
Q ss_pred hhcCCcccceeecccc--ccCccCchhhhCCCCCCEEeccCCcCCC--CCCCCcccCCCCeeeccCc
Q 039964 17 KIGQLKSLDFLDLSRN--QFFGGISSSLSRLSRLSVMDLSYNNLSG--KIPSGTQLQSFNALTYAGN 79 (175)
Q Consensus 17 ~~~~l~~L~~L~Ls~N--~l~g~iP~~~~~l~~L~~L~ls~N~l~g--~iP~~~~~~~l~~l~~~~N 79 (175)
.+..|+.|+.|++|.| ..++.++.....+++|++|++|.|++.- .++....+.+|..+++..+
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 3566788888899988 5566666656667889999999888762 2222234455555555554
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.0031 Score=50.28 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=16.6
Q ss_pred EEeecCcccc--CCChhhcCCcccceeeccccccC
Q 039964 3 LACVHFSLTG--QITPKIGQLKSLDFLDLSRNQFF 35 (175)
Q Consensus 3 L~Ls~N~l~g--~iP~~~~~l~~L~~L~Ls~N~l~ 35 (175)
|||.+|.++. .|-.-+.+||.|+.|+|++|+|+
T Consensus 76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 4555555542 13333445555555555555555
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0027 Score=52.76 Aligned_cols=60 Identities=28% Similarity=0.237 Sum_probs=27.0
Q ss_pred CcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCC--CCCcccCCCCeeeccCcc
Q 039964 21 LKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKI--PSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 21 l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~i--P~~~~~~~l~~l~~~~N~ 80 (175)
+|+|+.|+|..|..-+.--.+...+..|+.|||++|++.... +..+.++.|..++++.++
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence 344455555554311111222334555666666666655332 222444445555544443
No 53
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.52 E-value=0.0072 Score=26.90 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=4.7
Q ss_pred CCCEEeccCCcCC
Q 039964 47 RLSVMDLSYNNLS 59 (175)
Q Consensus 47 ~L~~L~ls~N~l~ 59 (175)
+|+.|++++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 54
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.60 E-value=0.028 Score=27.61 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=9.7
Q ss_pred cccceeeccccccCccCch
Q 039964 22 KSLDFLDLSRNQFFGGISS 40 (175)
Q Consensus 22 ~~L~~L~Ls~N~l~g~iP~ 40 (175)
++|+.|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 44555555555555 4444
No 55
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.60 E-value=0.028 Score=27.61 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=9.7
Q ss_pred cccceeeccccccCccCch
Q 039964 22 KSLDFLDLSRNQFFGGISS 40 (175)
Q Consensus 22 ~~L~~L~Ls~N~l~g~iP~ 40 (175)
++|+.|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 44555555555555 4444
No 56
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=94.22 E-value=0.043 Score=39.21 Aligned_cols=15 Identities=7% Similarity=0.060 Sum_probs=7.3
Q ss_pred eeeeehhHHHHHHHH
Q 039964 118 FYVSLILGFFVGFWG 132 (175)
Q Consensus 118 ~~~~~~~g~~~~~~~ 132 (175)
+++|+++|+.+.+++
T Consensus 50 IVIGvVVGVGg~ill 64 (154)
T PF04478_consen 50 IVIGVVVGVGGPILL 64 (154)
T ss_pred EEEEEEecccHHHHH
Confidence 455555555444333
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.92 E-value=0.036 Score=43.09 Aligned_cols=69 Identities=19% Similarity=0.373 Sum_probs=50.2
Q ss_pred cCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCC--cCCCCCCCC-cccCCCCeeeccCccCC
Q 039964 12 GQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYN--NLSGKIPSG-TQLQSFNALTYAGNELC 82 (175)
Q Consensus 12 g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N--~l~g~iP~~-~~~~~l~~l~~~~N~l~ 82 (175)
|.+....-.+..|+.|.+.+-.++ ++ ..+-.|+.|+.|++|.| ...+.++.. ...+++.++++++|.+.
T Consensus 33 g~~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCcccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 336666666777888888887776 33 23557889999999999 555555544 44589999999999765
No 58
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=93.73 E-value=0.086 Score=28.95 Aligned_cols=27 Identities=11% Similarity=-0.016 Sum_probs=13.8
Q ss_pred ceeeeeehhHHHHHHHHHHHHHhhccc
Q 039964 116 LGFYVSLILGFFVGFWGFCGTLLVKSS 142 (175)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~~~~~~ 142 (175)
..+.+++++.++++++++.+++++.+|
T Consensus 11 vaIa~~VvVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 11 VAIAVGVVVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred EEEEEEEEechHHHHHHHHHHhheEEe
Confidence 345555566666555555444444333
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.72 E-value=0.041 Score=44.06 Aligned_cols=58 Identities=31% Similarity=0.425 Sum_probs=41.3
Q ss_pred CcccceeeccccccCc--cCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964 21 LKSLDFLDLSRNQFFG--GISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG 78 (175)
Q Consensus 21 l~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~ 78 (175)
.+.+..|||..|.++. .|-.-+.+|+.|++|++|.|.|+..|-.. ....++..+-+.|
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG 130 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence 4678899999999984 24445678999999999999998776544 2334444444333
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.24 E-value=0.21 Score=41.84 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=36.2
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccc-cccCccCchhhhCCCCCCEEeccCC-cCCCCCCC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSR-NQFFGGISSSLSRLSRLSVMDLSYN-NLSGKIPS 64 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~L~ls~N-~l~g~iP~ 64 (175)
+.|++++|.++ .+|. +. .+|+.|++++ ++|+ .+|..+ .++|+.|++++| ++. .+|.
T Consensus 55 ~~L~Is~c~L~-sLP~-LP--~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~ 112 (426)
T PRK15386 55 GRLYIKDCDIE-SLPV-LP--NELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPE 112 (426)
T ss_pred CEEEeCCCCCc-ccCC-CC--CCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-cccc
Confidence 36889988887 5662 22 4688888876 5554 566544 246788888877 443 3443
No 61
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.83 E-value=0.004 Score=48.03 Aligned_cols=54 Identities=7% Similarity=-0.041 Sum_probs=29.8
Q ss_pred EEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcC
Q 039964 3 LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNL 58 (175)
Q Consensus 3 L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l 58 (175)
||+|.|.+. ..|..++++..+..+++.+|+++ ..|.++..++.++.+++-.|.|
T Consensus 70 l~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 70 LDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 344444444 45555555555555555555555 5555556666666555555544
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=0.0068 Score=47.95 Aligned_cols=77 Identities=27% Similarity=0.383 Sum_probs=44.2
Q ss_pred EEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC---cccCCCCeeeccCc
Q 039964 3 LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG---TQLQSFNALTYAGN 79 (175)
Q Consensus 3 L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~---~~~~~l~~l~~~~N 79 (175)
||..++.|+ .| .-...|+.|+.|.||-|.++ ++ ..+..++.|++|+|-.|.+. .+-+. ..+++|..|.+..|
T Consensus 24 LNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 24 LNCWGCGLD-DI-SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccCCCcc-HH-HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccC
Confidence 445555554 22 22355677777777777777 33 23566777777777776544 12211 34556666667777
Q ss_pred cCCCC
Q 039964 80 ELCGL 84 (175)
Q Consensus 80 ~l~~~ 84 (175)
..||.
T Consensus 99 PCc~~ 103 (388)
T KOG2123|consen 99 PCCGE 103 (388)
T ss_pred Ccccc
Confidence 66654
No 63
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.77 E-value=0.033 Score=26.83 Aligned_cols=16 Identities=44% Similarity=0.513 Sum_probs=8.5
Q ss_pred cccceeeccccccCcc
Q 039964 22 KSLDFLDLSRNQFFGG 37 (175)
Q Consensus 22 ~~L~~L~Ls~N~l~g~ 37 (175)
++|+.|||++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4566666666666543
No 64
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=91.55 E-value=0.067 Score=37.01 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=17.4
Q ss_pred eeeeeehhHHHHHHHHHHHHHhhcccchh
Q 039964 117 GFYVSLILGFFVGFWGFCGTLLVKSSWRH 145 (175)
Q Consensus 117 ~~~~~~~~g~~~~~~~~~~~~~~~~~~r~ 145 (175)
..++++++|+++++++++++++++.+|++
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777666655444443333
No 65
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.29 E-value=0.022 Score=44.07 Aligned_cols=77 Identities=18% Similarity=0.035 Sum_probs=60.3
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N 79 (175)
++||++.|++- .+..-|+.++.|..||++.|++. .+|..+.++..+..+++-.|+++-.+-+....+.+..++.-+|
T Consensus 45 tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 45 TVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 36899999986 56777888899999999999998 8899999998899999988888844433355555555555555
No 66
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.72 E-value=0.18 Score=24.98 Aligned_cols=13 Identities=46% Similarity=0.503 Sum_probs=6.7
Q ss_pred ccceeeccccccC
Q 039964 23 SLDFLDLSRNQFF 35 (175)
Q Consensus 23 ~L~~L~Ls~N~l~ 35 (175)
+|+.|+.++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555554
No 67
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.37 E-value=0.52 Score=42.15 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=25.9
Q ss_pred hhhCCCCCCEEeccCCcCCCCC--C-----CCcccCCCCeeeccCccCC
Q 039964 41 SLSRLSRLSVMDLSYNNLSGKI--P-----SGTQLQSFNALTYAGNELC 82 (175)
Q Consensus 41 ~~~~l~~L~~L~ls~N~l~g~i--P-----~~~~~~~l~~l~~~~N~l~ 82 (175)
.+.+|+.|+.||+|........ . ....+++|+.++.+|..+.
T Consensus 215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 3567888888888876544222 1 1134667777877776554
No 68
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=87.34 E-value=0.34 Score=26.18 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=5.0
Q ss_pred eehhHHHHHHHH
Q 039964 121 SLILGFFVGFWG 132 (175)
Q Consensus 121 ~~~~g~~~~~~~ 132 (175)
++++|+++++.+
T Consensus 7 aIIv~V~vg~~i 18 (38)
T PF02439_consen 7 AIIVAVVVGMAI 18 (38)
T ss_pred hHHHHHHHHHHH
Confidence 344444444433
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.76 E-value=0.12 Score=41.08 Aligned_cols=61 Identities=18% Similarity=0.140 Sum_probs=49.2
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCc--hhhhCCCCCCEEeccCCcCCCCCCC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGIS--SSLSRLSRLSVMDLSYNNLSGKIPS 64 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP--~~~~~l~~L~~L~ls~N~l~g~iP~ 64 (175)
.+|-||-|.++.. ..+..++.|+.|.|..|.+. .+- ..+.++++|+.|-|..|...|.-+.
T Consensus 44 EVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 44 EVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred eeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccch
Confidence 3688999999843 34788899999999999997 443 2477899999999999988877654
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=86.49 E-value=1.4 Score=36.97 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=5.5
Q ss_pred cccceeecccc
Q 039964 22 KSLDFLDLSRN 32 (175)
Q Consensus 22 ~~L~~L~Ls~N 32 (175)
.+|+.|++++|
T Consensus 94 ~nLe~L~Ls~C 104 (426)
T PRK15386 94 EGLEKLTVCHC 104 (426)
T ss_pred hhhhheEccCc
Confidence 34555555554
No 71
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=86.27 E-value=0.25 Score=44.09 Aligned_cols=58 Identities=29% Similarity=0.299 Sum_probs=31.8
Q ss_pred EEEeecCc-cccCCChhhc-CCcccceeeccccccCc-cCchhhhCCCCCCEEeccCCcCC
Q 039964 2 WLACVHFS-LTGQITPKIG-QLKSLDFLDLSRNQFFG-GISSSLSRLSRLSVMDLSYNNLS 59 (175)
Q Consensus 2 ~L~Ls~N~-l~g~iP~~~~-~l~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~L~ls~N~l~ 59 (175)
+||+++.. ++..-|..++ .||+|++|.+++=.+.. ..-.-..++++|..||+|+-+++
T Consensus 126 ~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 126 HLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred hcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence 56666653 2222333333 35777777777755532 12233456777777777775554
No 72
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.16 E-value=0.44 Score=41.03 Aligned_cols=62 Identities=24% Similarity=0.339 Sum_probs=40.3
Q ss_pred CcccceeeccccccCccCch---hhhCCCCCCEEeccCC--cCCCCCCCC--cccCCCCeeeccCccCCCC
Q 039964 21 LKSLDFLDLSRNQFFGGISS---SLSRLSRLSVMDLSYN--NLSGKIPSG--TQLQSFNALTYAGNELCGL 84 (175)
Q Consensus 21 l~~L~~L~Ls~N~l~g~iP~---~~~~l~~L~~L~ls~N--~l~g~iP~~--~~~~~l~~l~~~~N~l~~~ 84 (175)
.+.+..++|++|+|. .+-. --...+.|+.|+||+| .+. .-++. .....++.+.+.||.+|..
T Consensus 217 ~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred Ccceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccccc
Confidence 466788899999986 3321 1234678999999999 333 12222 1223467788999998854
No 73
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=85.93 E-value=2.6 Score=33.30 Aligned_cols=37 Identities=8% Similarity=-0.122 Sum_probs=17.7
Q ss_pred ceeeeeehhHHHHHHHHHHHHHhhcccchhhhhhhhh
Q 039964 116 LGFYVSLILGFFVGFWGFCGTLLVKSSWRHHYYNFLP 152 (175)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 152 (175)
+.+++++++|++++.++...++.+.+..|++..+.++
T Consensus 213 W~iv~g~~~G~~~L~ll~~lv~~~vr~krk~k~~eME 249 (278)
T PF06697_consen 213 WKIVVGVVGGVVLLGLLSLLVAMLVRYKRKKKIEEME 249 (278)
T ss_pred EEEEEEehHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3345566677666554444444444433333333333
No 74
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=85.74 E-value=0.65 Score=30.74 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=8.1
Q ss_pred ceeeeeehhHHHHHH
Q 039964 116 LGFYVSLILGFFVGF 130 (175)
Q Consensus 116 ~~~~~~~~~g~~~~~ 130 (175)
...++++++|.++++
T Consensus 65 ~gaiagi~vg~~~~v 79 (96)
T PTZ00382 65 TGAIAGISVAVVAVV 79 (96)
T ss_pred cccEEEEEeehhhHH
Confidence 345666666555444
No 75
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=85.04 E-value=0.62 Score=25.18 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=19.3
Q ss_pred ceeeeeehhHHHHHHHHHHHHHhhcccch
Q 039964 116 LGFYVSLILGFFVGFWGFCGTLLVKSSWR 144 (175)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~r 144 (175)
..+++++++|++++++.++....+.|+.+
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 45677788888887776666555555544
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.03 E-value=0.78 Score=22.90 Aligned_cols=14 Identities=43% Similarity=0.558 Sum_probs=9.7
Q ss_pred CCCCEEeccCCcCC
Q 039964 46 SRLSVMDLSYNNLS 59 (175)
Q Consensus 46 ~~L~~L~ls~N~l~ 59 (175)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777764
No 77
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=84.57 E-value=1.2 Score=31.89 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=20.5
Q ss_pred ccccccceeeeeehhHHHHHHHHHHHHHhhcccch
Q 039964 110 EDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWR 144 (175)
Q Consensus 110 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r 144 (175)
+.+..+.++++|+.+++++++++++ .++|.|++|
T Consensus 46 knknIVIGvVVGVGg~ill~il~lv-f~~c~r~kk 79 (154)
T PF04478_consen 46 KNKNIVIGVVVGVGGPILLGILALV-FIFCIRRKK 79 (154)
T ss_pred CCccEEEEEEecccHHHHHHHHHhh-eeEEEeccc
Confidence 3445578889998888777655444 333333333
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.30 E-value=0.94 Score=22.39 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=10.9
Q ss_pred CCCCCEEeccCCcCC
Q 039964 45 LSRLSVMDLSYNNLS 59 (175)
Q Consensus 45 l~~L~~L~ls~N~l~ 59 (175)
++.|+.|++++|+++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356778888888765
No 79
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=83.94 E-value=1.1 Score=35.78 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=44.9
Q ss_pred EEEeecCccccC----CChhhcCCcccceeeccccccCcc----Cchh-------hhCCCCCCEEeccCCcCCCCCCCC-
Q 039964 2 WLACVHFSLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG----ISSS-------LSRLSRLSVMDLSYNNLSGKIPSG- 65 (175)
Q Consensus 2 ~L~Ls~N~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~-------~~~l~~L~~L~ls~N~l~g~iP~~- 65 (175)
.++||+|-+.-. +-..+.+-.+|+..++|.-. +|. +|++ +-.|+.|+..+||+|-+....|+.
T Consensus 34 evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L 112 (388)
T COG5238 34 EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEEL 112 (388)
T ss_pred EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHH
Confidence 456777765422 22223444555655555532 222 2322 456788888888888877665543
Q ss_pred ----cccCCCCeeeccCccC
Q 039964 66 ----TQLQSFNALTYAGNEL 81 (175)
Q Consensus 66 ----~~~~~l~~l~~~~N~l 81 (175)
..-..+.++.+.+|.+
T Consensus 113 ~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 113 GDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHHHhcCCCceeEEeecCCC
Confidence 2334577777777755
No 80
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=81.08 E-value=0.77 Score=37.50 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=17.6
Q ss_pred hcCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCCcC
Q 039964 18 IGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNL 58 (175)
Q Consensus 18 ~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l 58 (175)
+..+++|+.|||..|.|+-. +...+..++.|+.|+++++.+
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 34445555555555554411 112233344444555544444
No 81
>PF15102 TMEM154: TMEM154 protein family
Probab=80.35 E-value=1.4 Score=31.32 Aligned_cols=8 Identities=13% Similarity=-0.072 Sum_probs=3.6
Q ss_pred hcccchhh
Q 039964 139 VKSSWRHH 146 (175)
Q Consensus 139 ~~~~~r~~ 146 (175)
++||||.+
T Consensus 81 ~~kRkr~K 88 (146)
T PF15102_consen 81 YYKRKRTK 88 (146)
T ss_pred EEeecccC
Confidence 34445443
No 82
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=78.61 E-value=0.96 Score=36.94 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=57.3
Q ss_pred CEEEeecCccccC----CChhhcCCcccceeeccccccCccCc----hhh-hCCCCCCEEeccCCcCCCCCC----C-Cc
Q 039964 1 MWLACVHFSLTGQ----ITPKIGQLKSLDFLDLSRNQFFGGIS----SSL-SRLSRLSVMDLSYNNLSGKIP----S-GT 66 (175)
Q Consensus 1 ~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~iP----~~~-~~l~~L~~L~ls~N~l~g~iP----~-~~ 66 (175)
++|||..|.|+-. +-..+..+++|+.|+++++.++-.=. ..+ ...++|+.|++++|.++-.-- . ..
T Consensus 216 evLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ 295 (382)
T KOG1909|consen 216 EVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA 295 (382)
T ss_pred eeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh
Confidence 3799999998732 33557788999999999999973211 122 246899999999998762210 0 02
Q ss_pred ccCCCCeeeccCccC
Q 039964 67 QLQSFNALTYAGNEL 81 (175)
Q Consensus 67 ~~~~l~~l~~~~N~l 81 (175)
..+.+..|++++|.+
T Consensus 296 ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 296 EKPDLEKLNLNGNRL 310 (382)
T ss_pred cchhhHHhcCCcccc
Confidence 356788899999977
No 83
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=77.95 E-value=2.7 Score=31.91 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=13.8
Q ss_pred ceeeeeehhHHHHHHHHHHHHHhh
Q 039964 116 LGFYVSLILGFFVGFWGFCGTLLV 139 (175)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~~~ 139 (175)
..++++++.|+++++++++++.++
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHH
Confidence 445666666666655555554444
No 84
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=74.95 E-value=3.5 Score=32.98 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=21.9
Q ss_pred cCCcccceeeccccccCccCchh----hhCCCCCCEEeccCCcC
Q 039964 19 GQLKSLDFLDLSRNQFFGGISSS----LSRLSRLSVMDLSYNNL 58 (175)
Q Consensus 19 ~~l~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~L~ls~N~l 58 (175)
-.+++|+..|||.|-+.-..|.. +++-+.|.+|.+++|-+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 34556666666666665444443 33455566666665543
No 85
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=74.05 E-value=6.1 Score=28.97 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=6.9
Q ss_pred ceeeeeehhHHHHH
Q 039964 116 LGFYVSLILGFFVG 129 (175)
Q Consensus 116 ~~~~~~~~~g~~~~ 129 (175)
..++++++++++++
T Consensus 78 ~~iivgvi~~Vi~I 91 (179)
T PF13908_consen 78 TGIIVGVICGVIAI 91 (179)
T ss_pred eeeeeehhhHHHHH
Confidence 34555555554444
No 86
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=71.59 E-value=2.8 Score=27.48 Aligned_cols=28 Identities=7% Similarity=-0.085 Sum_probs=15.8
Q ss_pred ceeeeeehhHHHHHHHHHHHHHhhcccc
Q 039964 116 LGFYVSLILGFFVGFWGFCGTLLVKSSW 143 (175)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 143 (175)
.|.+++.+.|+++++++++++..|+.+|
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~ 68 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKH 68 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhh
Confidence 5566666667776666544444444343
No 87
>PF15345 TMEM51: Transmembrane protein 51
Probab=71.27 E-value=11 Score=28.95 Aligned_cols=6 Identities=17% Similarity=-0.020 Sum_probs=2.1
Q ss_pred ehhHHH
Q 039964 122 LILGFF 127 (175)
Q Consensus 122 ~~~g~~ 127 (175)
+++|++
T Consensus 65 VG~Gv~ 70 (233)
T PF15345_consen 65 VGSGVA 70 (233)
T ss_pred hhHHHH
Confidence 333333
No 88
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=71.02 E-value=2 Score=27.00 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=8.6
Q ss_pred ehhHHHHHHHHHHHHHhhccc
Q 039964 122 LILGFFVGFWGFCGTLLVKSS 142 (175)
Q Consensus 122 ~~~g~~~~~~~~~~~~~~~~~ 142 (175)
+++|++++++++++++++.++
T Consensus 6 ~~~g~~~ll~~v~~~~~~~rr 26 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVCFRR 26 (75)
T ss_dssp HHHHHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHHhheeEEEEEee
Confidence 344444444444343334333
No 89
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=67.15 E-value=2.6 Score=33.77 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=5.1
Q ss_pred eeeehhHHHHH
Q 039964 119 YVSLILGFFVG 129 (175)
Q Consensus 119 ~~~~~~g~~~~ 129 (175)
++-+++|++++
T Consensus 272 ~vPIaVG~~La 282 (306)
T PF01299_consen 272 LVPIAVGAALA 282 (306)
T ss_pred hHHHHHHHHHH
Confidence 44444554443
No 90
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=66.05 E-value=2.1 Score=26.05 Aligned_cols=14 Identities=7% Similarity=0.285 Sum_probs=0.0
Q ss_pred eeeeehhHHHHHHH
Q 039964 118 FYVSLILGFFVGFW 131 (175)
Q Consensus 118 ~~~~~~~g~~~~~~ 131 (175)
+++++++|++++++
T Consensus 14 vIaG~Vvgll~ail 27 (64)
T PF01034_consen 14 VIAGGVVGLLFAIL 27 (64)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 91
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=65.62 E-value=5.9 Score=34.93 Aligned_cols=25 Identities=8% Similarity=-0.055 Sum_probs=16.1
Q ss_pred ccceeeeeehhHHHHHHHHHHHHHh
Q 039964 114 ITLGFYVSLILGFFVGFWGFCGTLL 138 (175)
Q Consensus 114 ~~~~~~~~~~~g~~~~~~~~~~~~~ 138 (175)
...|+++|+++.+++++++++++.+
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~ 291 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYW 291 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHH
Confidence 3578888887777766555444433
No 92
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=65.40 E-value=4.5 Score=24.90 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=20.3
Q ss_pred ceeeeeehhHHHHHHHHHHHHHhhcccchh
Q 039964 116 LGFYVSLILGFFVGFWGFCGTLLVKSSWRH 145 (175)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~ 145 (175)
.|..++++.|++++++-.+.-++|+++..+
T Consensus 32 qW~aIGvi~gi~~~~lt~ltN~YFK~k~dr 61 (68)
T PF04971_consen 32 QWAAIGVIGGIFFGLLTYLTNLYFKIKEDR 61 (68)
T ss_pred cchhHHHHHHHHHHHHHHHhHhhhhhhHhh
Confidence 467778888788777766666666554433
No 93
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=64.46 E-value=2.2 Score=36.12 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred cchhhhhh
Q 039964 142 SWRHHYYN 149 (175)
Q Consensus 142 ~~r~~~~~ 149 (175)
++|++..+
T Consensus 379 rrrR~~~~ 386 (439)
T PF02480_consen 379 RRRRRQRD 386 (439)
T ss_dssp --------
T ss_pred hhcccccc
Confidence 33333333
No 94
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=63.49 E-value=3.4 Score=33.45 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=39.0
Q ss_pred hcCCcccceeeccccc-cCccCchhhhCCCCCCEEeccCCcCCCCCCCC----cccCCCCeeeccC
Q 039964 18 IGQLKSLDFLDLSRNQ-FFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG----TQLQSFNALTYAG 78 (175)
Q Consensus 18 ~~~l~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~----~~~~~l~~l~~~~ 78 (175)
...+++|.+||||.|. ++...-..+..++.|++|.++.+. +.+|+. ...+++..+++.|
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence 3567889999999764 444444557788889988887664 456654 3345566666554
No 95
>PF15050 SCIMP: SCIMP protein
Probab=63.36 E-value=3.5 Score=28.32 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=4.9
Q ss_pred HHHHHhhcccch
Q 039964 133 FCGTLLVKSSWR 144 (175)
Q Consensus 133 ~~~~~~~~~~~r 144 (175)
+...++|..||.
T Consensus 23 lglIlyCvcR~~ 34 (133)
T PF15050_consen 23 LGLILYCVCRWQ 34 (133)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 96
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=62.80 E-value=1 Score=36.35 Aligned_cols=57 Identities=28% Similarity=0.252 Sum_probs=25.3
Q ss_pred eecCccccCCChhhcCCcccceeecccc-ccCcc-CchhhhCCCCCCEEeccCCcCCCC
Q 039964 5 CVHFSLTGQITPKIGQLKSLDFLDLSRN-QFFGG-ISSSLSRLSRLSVMDLSYNNLSGK 61 (175)
Q Consensus 5 Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~L~ls~N~l~g~ 61 (175)
|.+++|...|-.++..-.+|+.|||+.. .++.. ..--+.+++.|..|+|+...++..
T Consensus 217 lEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 217 LEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE 275 (419)
T ss_pred ccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch
Confidence 3444444444444444444555555432 22200 011134556666666666555443
No 97
>PTZ00370 STEVOR; Provisional
Probab=60.14 E-value=6 Score=31.42 Aligned_cols=6 Identities=0% Similarity=-0.163 Sum_probs=2.2
Q ss_pred hhcccc
Q 039964 138 LVKSSW 143 (175)
Q Consensus 138 ~~~~~~ 143 (175)
|.+|||
T Consensus 277 wlyrrR 282 (296)
T PTZ00370 277 WLYRRR 282 (296)
T ss_pred HHHHhh
Confidence 333333
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=59.74 E-value=6.8 Score=40.17 Aligned_cols=32 Identities=22% Similarity=0.135 Sum_probs=26.0
Q ss_pred EeecCccccCCChhhcCCcccceeeccccccC
Q 039964 4 ACVHFSLTGQITPKIGQLKSLDFLDLSRNQFF 35 (175)
Q Consensus 4 ~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~ 35 (175)
||++|+|+-.-+..|..|++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999998444456788999999999999886
No 99
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=59.72 E-value=9.7 Score=30.29 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=4.2
Q ss_pred ceeeeeehhHH
Q 039964 116 LGFYVSLILGF 126 (175)
Q Consensus 116 ~~~~~~~~~g~ 126 (175)
.++++.+.+++
T Consensus 226 ~G~VVlIslAi 236 (281)
T PF12768_consen 226 RGFVVLISLAI 236 (281)
T ss_pred ceEEEEEehHH
Confidence 33444433333
No 100
>PRK00523 hypothetical protein; Provisional
Probab=58.93 E-value=7.8 Score=24.14 Aligned_cols=35 Identities=17% Similarity=-0.046 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Q 039964 123 ILGFFVGFWGFCGTLLVKSSWRHHYYNFLPGIKNW 157 (175)
Q Consensus 123 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 157 (175)
.++++++++.+++.+++.|+.-++++..=.-+...
T Consensus 9 ~l~i~~li~G~~~Gffiark~~~k~l~~NPpine~ 43 (72)
T PRK00523 9 GLGIPLLIVGGIIGYFVSKKMFKKQIRENPPITEN 43 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCHH
Confidence 33344444445566666666666666543333333
No 101
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=58.34 E-value=6.3 Score=27.37 Aligned_cols=12 Identities=17% Similarity=0.027 Sum_probs=5.6
Q ss_pred hhcccchhhhhh
Q 039964 138 LVKSSWRHHYYN 149 (175)
Q Consensus 138 ~~~~~~r~~~~~ 149 (175)
+++++.|++..+
T Consensus 18 ~~~~~~rRR~r~ 29 (130)
T PF12273_consen 18 LFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHhhc
Confidence 333445555443
No 102
>PRK01844 hypothetical protein; Provisional
Probab=56.33 E-value=9.4 Score=23.79 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh
Q 039964 124 LGFFVGFWGFCGTLLVKSSWRHHYYNFLPGIKNWFY 159 (175)
Q Consensus 124 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 159 (175)
++++++++.+++.+++.|+.-++++..=.-+.....
T Consensus 9 l~I~~li~G~~~Gff~ark~~~k~lk~NPpine~mi 44 (72)
T PRK01844 9 VGVVALVAGVALGFFIARKYMMNYLQKNPPINEQML 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 334444444555666666666666655444444333
No 103
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=53.62 E-value=7.6 Score=39.87 Aligned_cols=32 Identities=31% Similarity=0.284 Sum_probs=25.2
Q ss_pred eccccccCccCchhhhCCCCCCEEeccCCcCC
Q 039964 28 DLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS 59 (175)
Q Consensus 28 ~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~ 59 (175)
||++|+|+-.-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999433446778999999999998664
No 104
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=53.26 E-value=5.9 Score=25.13 Aligned_cols=34 Identities=9% Similarity=-0.122 Sum_probs=17.0
Q ss_pred eeeeeehhHHHHHHHHHHHHHhhcccchhhhhhh
Q 039964 117 GFYVSLILGFFVGFWGFCGTLLVKSSWRHHYYNF 150 (175)
Q Consensus 117 ~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 150 (175)
+..+|++.+-++.-++++.+++.+.+.|++--+.
T Consensus 34 g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~~~ 67 (79)
T PF07213_consen 34 GLLAGIVAADAVLTLLIVLVVYYCARPRRRPTQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCccc
Confidence 3556666665555444444445444444433333
No 105
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=53.22 E-value=4.4 Score=29.33 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=0.0
Q ss_pred ceeeeeehhHHHHHHHHHHHHH-hhcccchhhh
Q 039964 116 LGFYVSLILGFFVGFWGFCGTL-LVKSSWRHHY 147 (175)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~-~~~~~~r~~~ 147 (175)
.+.++++++|+++++.++.+++ ++.|+++.+|
T Consensus 128 T~tLVGIIVGVLlaIG~igGIIivvvRKmSGRy 160 (162)
T PF05808_consen 128 TVTLVGIIVGVLLAIGFIGGIIIVVVRKMSGRY 160 (162)
T ss_dssp ---------------------------------
T ss_pred eeeeeeehhhHHHHHHHHhheeeEEeehhcccc
Confidence 4567777777777665544433 4456666665
No 106
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=53.11 E-value=11 Score=27.89 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=9.3
Q ss_pred eeeeehhHHHHHHHHHHHHHhh
Q 039964 118 FYVSLILGFFVGFWGFCGTLLV 139 (175)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~~~ 139 (175)
..+++++-++++++++++.+++
T Consensus 158 ~~laI~lPvvv~~~~~~~~~~~ 179 (189)
T PF14610_consen 158 YALAIALPVVVVVLALIMYGFF 179 (189)
T ss_pred eeEEEEccHHHHHHHHHHHhhh
Confidence 3444444444444443333333
No 107
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=52.49 E-value=15 Score=20.17 Aligned_cols=12 Identities=17% Similarity=0.548 Sum_probs=5.8
Q ss_pred HHHhhcccchhh
Q 039964 135 GTLLVKSSWRHH 146 (175)
Q Consensus 135 ~~~~~~~~~r~~ 146 (175)
+..+.+|+|..+
T Consensus 25 va~~iYRKw~aR 36 (43)
T PF08114_consen 25 VALFIYRKWQAR 36 (43)
T ss_pred HHHHHHHHHHHH
Confidence 344555555433
No 108
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=52.13 E-value=3.6 Score=27.94 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHhhcc
Q 039964 131 WGFCGTLLVKS 141 (175)
Q Consensus 131 ~~~~~~~~~~~ 141 (175)
++++.+++|+|
T Consensus 39 LLliGCWYckR 49 (118)
T PF14991_consen 39 LLLIGCWYCKR 49 (118)
T ss_dssp -----------
T ss_pred HHHHhheeeee
Confidence 33444444433
No 109
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=51.53 E-value=36 Score=22.58 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=14.2
Q ss_pred hcCCcccceeeccccccCccCc-hhhhCCCCCCEEeccC
Q 039964 18 IGQLKSLDFLDLSRNQFFGGIS-SSLSRLSRLSVMDLSY 55 (175)
Q Consensus 18 ~~~l~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~L~ls~ 55 (175)
|..+++|+.+++.++ +. .++ ..+.++++++.+.+.+
T Consensus 31 F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS
T ss_pred ccccccccccccccc-cc-ccceeeeecccccccccccc
Confidence 444445555555543 33 222 2344444555555543
No 110
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=51.00 E-value=8.5 Score=26.70 Aligned_cols=6 Identities=33% Similarity=0.733 Sum_probs=1.9
Q ss_pred CCCCCC
Q 039964 85 PLPNKC 90 (175)
Q Consensus 85 p~~~~c 90 (175)
|..+.|
T Consensus 59 P~S~~C 64 (129)
T PF12191_consen 59 PKSPFC 64 (129)
T ss_dssp TT-CCC
T ss_pred CCCccc
Confidence 333334
No 111
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=50.91 E-value=37 Score=28.41 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=8.4
Q ss_pred ceeeeeehhHHHHHHH
Q 039964 116 LGFYVSLILGFFVGFW 131 (175)
Q Consensus 116 ~~~~~~~~~g~~~~~~ 131 (175)
.++|++|.|++++++-
T Consensus 366 tgaIaGIsvavvvvVg 381 (397)
T PF03302_consen 366 TGAIAGISVAVVVVVG 381 (397)
T ss_pred ccceeeeeehhHHHHH
Confidence 4556666555554443
No 112
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=48.65 E-value=9.2 Score=27.37 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=9.6
Q ss_pred eehhHHHHHHHHHHHHHhhcccc
Q 039964 121 SLILGFFVGFWGFCGTLLVKSSW 143 (175)
Q Consensus 121 ~~~~g~~~~~~~~~~~~~~~~~~ 143 (175)
++++|+.+.++++++++-|.-.|
T Consensus 11 ~i~igi~Ll~lLl~cgiGcvwhw 33 (158)
T PF11770_consen 11 AISIGISLLLLLLLCGIGCVWHW 33 (158)
T ss_pred HHHHHHHHHHHHHHHhcceEEEe
Confidence 34444444444444433333333
No 113
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=47.01 E-value=28 Score=26.28 Aligned_cols=8 Identities=13% Similarity=0.210 Sum_probs=3.3
Q ss_pred eeeeehhH
Q 039964 118 FYVSLILG 125 (175)
Q Consensus 118 ~~~~~~~g 125 (175)
+++.+..|
T Consensus 102 lI~lv~~g 109 (202)
T PF06365_consen 102 LIALVTSG 109 (202)
T ss_pred EEehHHhh
Confidence 33334444
No 114
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=47.01 E-value=18 Score=23.17 Aligned_cols=7 Identities=0% Similarity=-0.055 Sum_probs=2.0
Q ss_pred hhhhhhh
Q 039964 149 NFLPGIK 155 (175)
Q Consensus 149 ~~~~~~~ 155 (175)
+.++...
T Consensus 37 rkId~li 43 (81)
T PF00558_consen 37 RKIDRLI 43 (81)
T ss_dssp --CHHHH
T ss_pred HhHHHHH
Confidence 4444433
No 115
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=46.96 E-value=14 Score=27.13 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=13.4
Q ss_pred eeeeeehhHHHHHHHHHHHHH
Q 039964 117 GFYVSLILGFFVGFWGFCGTL 137 (175)
Q Consensus 117 ~~~~~~~~g~~~~~~~~~~~~ 137 (175)
.+.+++++|++++++++++++
T Consensus 75 ~~~~~iivgvi~~Vi~Iv~~I 95 (179)
T PF13908_consen 75 YFITGIIVGVICGVIAIVVLI 95 (179)
T ss_pred cceeeeeeehhhHHHHHHHhH
Confidence 457777777777666554433
No 116
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=45.46 E-value=21 Score=23.50 Aligned_cols=14 Identities=14% Similarity=0.012 Sum_probs=6.8
Q ss_pred cceeeeeehhHHHH
Q 039964 115 TLGFYVSLILGFFV 128 (175)
Q Consensus 115 ~~~~~~~~~~g~~~ 128 (175)
+.++.+++++++.+
T Consensus 68 iagi~vg~~~~v~~ 81 (96)
T PTZ00382 68 IAGISVAVVAVVGG 81 (96)
T ss_pred EEEEEeehhhHHHH
Confidence 44555555544433
No 117
>PF15179 Myc_target_1: Myc target protein 1
Probab=44.70 E-value=15 Score=27.18 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=13.5
Q ss_pred eeeeeehhHHHHHHHHHHHHHhhc
Q 039964 117 GFYVSLILGFFVGFWGFCGTLLVK 140 (175)
Q Consensus 117 ~~~~~~~~g~~~~~~~~~~~~~~~ 140 (175)
.+-+.+++|+++|.++.+++.+..
T Consensus 24 aF~vSm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 24 AFCVSMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666665555554444
No 118
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=43.20 E-value=15 Score=29.45 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=20.3
Q ss_pred eeehhHHHHHHHHHHHHHhhcccchhhhhhhh
Q 039964 120 VSLILGFFVGFWGFCGTLLVKSSWRHHYYNFL 151 (175)
Q Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 151 (175)
+.+++|+++++.+++-++|..|+.|..+|..-
T Consensus 7 ILIIvG~IAIiaLLvhGlWtsRkE~s~~F~~~ 38 (324)
T COG3115 7 ILIIVGAIAIIALLVHGLWTSRKERSSYFRDR 38 (324)
T ss_pred HHHHHHHHHHHHHHHhhhhhcchhhccccccC
Confidence 34566666666666667777666666666544
No 119
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.80 E-value=13 Score=25.67 Aligned_cols=31 Identities=6% Similarity=0.112 Sum_probs=16.3
Q ss_pred ccceeeeeehhHHHHHHHHHHHHHhhcccchh
Q 039964 114 ITLGFYVSLILGFFVGFWGFCGTLLVKSSWRH 145 (175)
Q Consensus 114 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~ 145 (175)
.+.++++|++.|++..++ ++.+++.+++++.
T Consensus 65 ~i~~Ii~gv~aGvIg~Il-li~y~irR~~Kk~ 95 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIIL-LISYCIRRLRKKS 95 (122)
T ss_dssp CHHHHHHHHHHHHHHHHH-HHHHHHHHHS---
T ss_pred ceeehhHHHHHHHHHHHH-HHHHHHHHHhccC
Confidence 356677777777766554 4444445444444
No 120
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=42.05 E-value=13 Score=29.58 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=18.9
Q ss_pred eeehhHHHHHHHHHHHHHhhcccchhhhhhhh
Q 039964 120 VSLILGFFVGFWGFCGTLLVKSSWRHHYYNFL 151 (175)
Q Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 151 (175)
+.+++|+++++.+++-.+|-.|+-+.++|.-.
T Consensus 5 iLIIvGaiaI~aLl~hGlwt~Rke~s~~f~~~ 36 (284)
T TIGR02205 5 ILIIVGILAIAALLFHGLWTSRKEKSKYFDKA 36 (284)
T ss_pred hHHHHHHHHHHHHHHccccccccccccccccC
Confidence 34566666666666666666666555555433
No 121
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=41.64 E-value=18 Score=25.30 Aligned_cols=28 Identities=25% Similarity=0.095 Sum_probs=15.2
Q ss_pred eeeehhHHHHHHHHHHHHHhhcccchhh
Q 039964 119 YVSLILGFFVGFWGFCGTLLVKSSWRHH 146 (175)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~~~~r~~ 146 (175)
.+-+++++.+++.+.++.+++++..|++
T Consensus 102 a~~~il~il~~i~is~~~~~~yr~~r~~ 129 (139)
T PHA03099 102 PSPGIVLVLVGIIITCCLLSVYRFTRRT 129 (139)
T ss_pred hhhHHHHHHHHHHHHHHHHhhheeeecc
Confidence 3334555666666555555555554444
No 122
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=38.39 E-value=33 Score=24.45 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=11.1
Q ss_pred eeeeeehhHHHHHHHHHHHHHh
Q 039964 117 GFYVSLILGFFVGFWGFCGTLL 138 (175)
Q Consensus 117 ~~~~~~~~g~~~~~~~~~~~~~ 138 (175)
.++.|++.|+++++.++.++++
T Consensus 61 tAIaGIVfgiVfimgvva~i~i 82 (155)
T PF10873_consen 61 TAIAGIVFGIVFIMGVVAGIAI 82 (155)
T ss_pred ceeeeeehhhHHHHHHHHHHHH
Confidence 3455566666555544444333
No 123
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=38.04 E-value=25 Score=16.71 Aligned_cols=11 Identities=36% Similarity=0.320 Sum_probs=7.0
Q ss_pred CCCCEEeccCC
Q 039964 46 SRLSVMDLSYN 56 (175)
Q Consensus 46 ~~L~~L~ls~N 56 (175)
++|+.|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45667766665
No 124
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=37.43 E-value=56 Score=24.96 Aligned_cols=32 Identities=9% Similarity=-0.071 Sum_probs=19.2
Q ss_pred ccceeeeeehhHHHHHHHHHHHHHhhcccchh
Q 039964 114 ITLGFYVSLILGFFVGFWGFCGTLLVKSSWRH 145 (175)
Q Consensus 114 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~ 145 (175)
.+.+.+++.++++++++++++++-+|+.+-++
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k 69 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLVRYCRQSPHK 69 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHHHHHhhcccc
Confidence 34555666666666666666666777644333
No 125
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=36.31 E-value=45 Score=22.77 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=10.6
Q ss_pred hhhhhhhhhhhhhHhHHHHHHh
Q 039964 151 LPGIKNWFYVTAVVNIAKLQRR 172 (175)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~ 172 (175)
+.+++++++.......+-+-+|
T Consensus 99 yr~ltrkkl~~ha~kkqniyer 120 (150)
T PF06084_consen 99 YRSLTRKKLEQHASKKQNIYER 120 (150)
T ss_pred HHHHHHHHHHHHHHhhcchhhh
Confidence 3455555555555544433333
No 126
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=35.22 E-value=62 Score=18.18 Aligned_cols=10 Identities=0% Similarity=0.049 Sum_probs=3.8
Q ss_pred hcccchhhhh
Q 039964 139 VKSSWRHHYY 148 (175)
Q Consensus 139 ~~~~~r~~~~ 148 (175)
..++++++.+
T Consensus 29 ~~~~~~k~~~ 38 (49)
T PF05545_consen 29 AYRPRNKKRF 38 (49)
T ss_pred HHcccchhhH
Confidence 3343433333
No 127
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=34.97 E-value=33 Score=25.19 Aligned_cols=32 Identities=9% Similarity=0.215 Sum_probs=14.6
Q ss_pred ceeeeeehhHHHHHHHHHHHHHhhcccchhhhh
Q 039964 116 LGFYVSLILGFFVGFWGFCGTLLVKSSWRHHYY 148 (175)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~~~ 148 (175)
..++.+|+.+++++++..+.. ||...+|+..|
T Consensus 114 ~g~IaGIvsav~valvGAvsS-yiaYqkKKlCF 145 (169)
T PF12301_consen 114 AGTIAGIVSAVVVALVGAVSS-YIAYQKKKLCF 145 (169)
T ss_pred cchhhhHHHHHHHHHHHHHHH-HHHHHhhccce
Confidence 345555555555544444443 33333333334
No 128
>PRK01741 cell division protein ZipA; Provisional
Probab=32.41 E-value=34 Score=27.83 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=22.7
Q ss_pred eeehhHHHHHHHHHHHHHhhcccchhhhhhhhhh
Q 039964 120 VSLILGFFVGFWGFCGTLLVKSSWRHHYYNFLPG 153 (175)
Q Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 153 (175)
+.+++|++++++++.-.+|--||-+-+||.--..
T Consensus 6 iliILg~lal~~Lv~hgiWsnRrEKSqyF~n~~t 39 (332)
T PRK01741 6 ILIILGILALVALVAHGIWSNRREKSQYFSNANT 39 (332)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHhhhcccc
Confidence 4556677777777777777777766667765444
No 129
>PRK03427 cell division protein ZipA; Provisional
Probab=32.28 E-value=27 Score=28.44 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=17.5
Q ss_pred eeehhHHHHHHHHHHHHHhhcccchhh
Q 039964 120 VSLILGFFVGFWGFCGTLLVKSSWRHH 146 (175)
Q Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~~~r~~ 146 (175)
|.+++|.++++.+++-++|..|+-|.+
T Consensus 8 iLivvGAIAIiAlL~HGlWtsRKers~ 34 (333)
T PRK03427 8 ILIIVGAIAIIALLVHGFWTSRKERSS 34 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccc
Confidence 456677777777777777776655533
No 130
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=31.19 E-value=67 Score=25.54 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=26.6
Q ss_pred cccccceeeeeehhHHHHHHHHHHHHHhhcccchhhhh
Q 039964 111 DQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWRHHYY 148 (175)
Q Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~~~ 148 (175)
....+..+.+++++|++++++++.+++...+|+|..+.
T Consensus 225 ~~G~VVlIslAiALG~v~ll~l~Gii~~~~~r~~~~~~ 262 (281)
T PF12768_consen 225 SRGFVVLISLAIALGTVFLLVLIGIILAYIRRRRQGYV 262 (281)
T ss_pred cceEEEEEehHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 34456778889999999888777666666666655543
No 131
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=30.30 E-value=66 Score=26.61 Aligned_cols=32 Identities=9% Similarity=0.004 Sum_probs=15.7
Q ss_pred eeeehhHHHHHHHHHHHHHhhcccchhhhhhh
Q 039964 119 YVSLILGFFVGFWGFCGTLLVKSSWRHHYYNF 150 (175)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 150 (175)
.+..+.+.++.+++++.++++++..+++..+.
T Consensus 299 ~~i~v~~~~vli~vl~~~~~~~~~~~~~~~~~ 330 (361)
T PF12259_consen 299 VHIAVCGAIVLIIVLISLAWLYRTFRRRQLRS 330 (361)
T ss_pred EEEehhHHHHHHHHHHHHHhheeehHHHHhhh
Confidence 33344444444444545556666555554443
No 132
>PHA03283 envelope glycoprotein E; Provisional
Probab=29.43 E-value=78 Score=27.52 Aligned_cols=36 Identities=6% Similarity=-0.226 Sum_probs=16.4
Q ss_pred eeeeeehhHHHHHHHHHHHHHhhcccchhhhhhhhh
Q 039964 117 GFYVSLILGFFVGFWGFCGTLLVKSSWRHHYYNFLP 152 (175)
Q Consensus 117 ~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 152 (175)
++.+..+++.++++.++.+.++.+.++|+...+.++
T Consensus 399 ~l~~~~~~~~~~~~~~~~l~vw~c~~~r~~~~~~y~ 434 (542)
T PHA03283 399 YLAFLLAIICTCAALLVALVVWGCILYRRSNRKPYE 434 (542)
T ss_pred cchhHHHHHHHHHHHHHHHhhhheeeehhhcCCccc
Confidence 344444555555554444445544443333333333
No 133
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=28.41 E-value=59 Score=18.73 Aligned_cols=13 Identities=8% Similarity=-0.069 Sum_probs=5.8
Q ss_pred cchhhhhhhhhhh
Q 039964 142 SWRHHYYNFLPGI 154 (175)
Q Consensus 142 ~~r~~~~~~~~~~ 154 (175)
.++.-|.+..|..
T Consensus 24 ~K~ygYkht~d~~ 36 (50)
T PF12606_consen 24 LKAYGYKHTVDPL 36 (50)
T ss_pred hhccccccccCCC
Confidence 3334444555543
No 134
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=28.07 E-value=2e+02 Score=23.42 Aligned_cols=22 Identities=9% Similarity=-0.029 Sum_probs=9.6
Q ss_pred eeeehhHHHHHHHHHHHHHhhc
Q 039964 119 YVSLILGFFVGFWGFCGTLLVK 140 (175)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~ 140 (175)
++.|+++++++++.+++..+++
T Consensus 200 lv~Iv~~cvaG~aAliva~~cW 221 (341)
T PF06809_consen 200 LVLIVVCCVAGAAALIVAGYCW 221 (341)
T ss_pred eehhHHHHHHHHHHHHHhhheE
Confidence 3344444444444444444433
No 135
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=27.00 E-value=90 Score=21.40 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=5.4
Q ss_pred eeeeehhHHHHH
Q 039964 118 FYVSLILGFFVG 129 (175)
Q Consensus 118 ~~~~~~~g~~~~ 129 (175)
.++.+++|-++.
T Consensus 84 ~aLp~VIGGLca 95 (126)
T PF03229_consen 84 FALPLVIGGLCA 95 (126)
T ss_pred cchhhhhhHHHH
Confidence 344555544443
No 136
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=26.25 E-value=98 Score=18.84 Aligned_cols=15 Identities=0% Similarity=0.080 Sum_probs=7.3
Q ss_pred HHHhhcccchhhhhh
Q 039964 135 GTLLVKSSWRHHYYN 149 (175)
Q Consensus 135 ~~~~~~~~~r~~~~~ 149 (175)
+.+++.++.-++++.
T Consensus 13 ~Gff~ar~~~~k~l~ 27 (64)
T PF03672_consen 13 IGFFIARKYMEKQLK 27 (64)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555455544
No 137
>PRK04335 cell division protein ZipA; Provisional
Probab=25.96 E-value=42 Score=27.17 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=18.1
Q ss_pred eeeehhHHHHHHHHHHHHHhhcccchhhhh
Q 039964 119 YVSLILGFFVGFWGFCGTLLVKSSWRHHYY 148 (175)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~~~~r~~~~ 148 (175)
++.+++|.++++.+++-++|..|+-+...|
T Consensus 6 lvLiivGAlAI~ALL~HGlWtsrKe~~~~f 35 (313)
T PRK04335 6 FVLIVVGALAIAALLFHGLWTSKKEGKSKF 35 (313)
T ss_pred ehHHHHHHHHHHHHHHhccccccccccchh
Confidence 345666777666666667777666444333
No 138
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.79 E-value=63 Score=20.02 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=7.3
Q ss_pred HHHHHhhcccchhhhh
Q 039964 133 FCGTLLVKSSWRHHYY 148 (175)
Q Consensus 133 ~~~~~~~~~~~r~~~~ 148 (175)
+++.+++.++.-.+++
T Consensus 18 ~~~G~fiark~~~k~l 33 (71)
T COG3763 18 LIGGFFIARKQMKKQL 33 (71)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555554444433
No 139
>PF15069 FAM163: FAM163 family
Probab=24.90 E-value=96 Score=22.08 Aligned_cols=9 Identities=22% Similarity=0.065 Sum_probs=3.4
Q ss_pred eeeehhHHH
Q 039964 119 YVSLILGFF 127 (175)
Q Consensus 119 ~~~~~~g~~ 127 (175)
+.|.+++.+
T Consensus 8 ItGgILAtV 16 (143)
T PF15069_consen 8 ITGGILATV 16 (143)
T ss_pred EechHHHHH
Confidence 333333333
No 140
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=24.24 E-value=7.8 Score=33.23 Aligned_cols=38 Identities=34% Similarity=0.453 Sum_probs=20.4
Q ss_pred cccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCC
Q 039964 22 KSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLS 59 (175)
Q Consensus 22 ~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~ 59 (175)
..++.++++.|.++.. +...+..+..++.+.+++|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4556666666666532 2233444556666666666543
No 141
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=23.86 E-value=32 Score=28.82 Aligned_cols=16 Identities=6% Similarity=0.073 Sum_probs=6.5
Q ss_pred Hhhcccchhhhhhhhh
Q 039964 137 LLVKSSWRHHYYNFLP 152 (175)
Q Consensus 137 ~~~~~~~r~~~~~~~~ 152 (175)
++++.++||-.-+-++
T Consensus 406 ~~~~v~rrr~~~~dv~ 421 (436)
T PTZ00208 406 FFIMVKRRRNSSEDVD 421 (436)
T ss_pred hheeeeeccCCchhcc
Confidence 3333344443444443
No 142
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=23.65 E-value=99 Score=17.11 Aligned_cols=9 Identities=22% Similarity=0.043 Sum_probs=3.3
Q ss_pred chhhhhhhh
Q 039964 143 WRHHYYNFL 151 (175)
Q Consensus 143 ~r~~~~~~~ 151 (175)
.+++..+.+
T Consensus 29 ~~r~~~~~l 37 (45)
T TIGR03141 29 DRRRLLREL 37 (45)
T ss_pred HHHHHHHHH
Confidence 333333333
No 143
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=23.63 E-value=69 Score=23.10 Aligned_cols=30 Identities=10% Similarity=0.283 Sum_probs=11.9
Q ss_pred ehhHHHHHHHHHHHHHhhcccchhhhhhhh
Q 039964 122 LILGFFVGFWGFCGTLLVKSSWRHHYYNFL 151 (175)
Q Consensus 122 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 151 (175)
+++|+++++..-.......+++|++....+
T Consensus 114 ~l~Gli~~~~~Y~ls~~lI~~Yr~~~~~~~ 143 (154)
T TIGR03546 114 FVVGLILLPPAFAISKVIIAKYRKRIVAWV 143 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333333333444444433333
No 144
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=23.31 E-value=32 Score=31.36 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=9.9
Q ss_pred eeeeehhHHHHHHHHHHHHHhh
Q 039964 118 FYVSLILGFFVGFWGFCGTLLV 139 (175)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~~~ 139 (175)
+.++|..|++++++++++++++
T Consensus 274 fLl~ILG~~~livl~lL~vLl~ 295 (807)
T PF10577_consen 274 FLLAILGGTALIVLILLCVLLC 295 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544455544444443333
No 145
>PRK11677 hypothetical protein; Provisional
Probab=22.94 E-value=1.9e+02 Score=20.35 Aligned_cols=9 Identities=33% Similarity=0.600 Sum_probs=3.8
Q ss_pred hHHHHHHHH
Q 039964 124 LGFFVGFWG 132 (175)
Q Consensus 124 ~g~~~~~~~ 132 (175)
+|+++|+++
T Consensus 8 i~livG~ii 16 (134)
T PRK11677 8 IGLVVGIII 16 (134)
T ss_pred HHHHHHHHH
Confidence 444444433
No 146
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.93 E-value=2.6e+02 Score=19.24 Aligned_cols=6 Identities=50% Similarity=1.148 Sum_probs=2.3
Q ss_pred HHHHHH
Q 039964 125 GFFVGF 130 (175)
Q Consensus 125 g~~~~~ 130 (175)
|+++|+
T Consensus 5 ~lvvG~ 10 (128)
T PF06295_consen 5 GLVVGL 10 (128)
T ss_pred HHHHHH
Confidence 333333
No 147
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.77 E-value=87 Score=22.48 Aligned_cols=9 Identities=11% Similarity=0.372 Sum_probs=3.5
Q ss_pred cchhhhhhh
Q 039964 142 SWRHHYYNF 150 (175)
Q Consensus 142 ~~r~~~~~~ 150 (175)
+-+++|-.+
T Consensus 27 kl~r~Y~~l 35 (151)
T PF14584_consen 27 KLKRRYDAL 35 (151)
T ss_pred HHHHHHHHH
Confidence 333443333
No 148
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=22.13 E-value=72 Score=23.79 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=9.3
Q ss_pred eeehhHHHHHHHHHHHHHhhcc
Q 039964 120 VSLILGFFVGFWGFCGTLLVKS 141 (175)
Q Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~ 141 (175)
...+.|+++.+.+..++++.+|
T Consensus 161 ~SFiGGIVL~LGv~aI~ff~~K 182 (186)
T PF05283_consen 161 ASFIGGIVLTLGVLAIIFFLYK 182 (186)
T ss_pred hhhhhHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444433
No 149
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=21.91 E-value=1.4e+02 Score=27.48 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=8.5
Q ss_pred ehhHHHHHHHHHHHHHhhcccc
Q 039964 122 LILGFFVGFWGFCGTLLVKSSW 143 (175)
Q Consensus 122 ~~~g~~~~~~~~~~~~~~~~~~ 143 (175)
.++|.++++++++++.++.|||
T Consensus 849 ~i~g~i~iiv~LaAla~lLrRR 870 (872)
T COG3889 849 GICGPIVIIVGLAALALLLRRR 870 (872)
T ss_pred ccchHHHHHHHHHHHHHHHHhh
Confidence 3344443333333333333333
No 150
>PF10725 DUF2517: Protein of unknown function (DUF2517); InterPro: IPR019663 This entry represents proteins conserved in Proteobacteria and includes the predicted protein YbfA. The function is not known.
Probab=21.63 E-value=96 Score=18.64 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=19.8
Q ss_pred HHHhhcccchhhhhhhhhhhhhhhhhhhhH
Q 039964 135 GTLLVKSSWRHHYYNFLPGIKNWFYVTAVV 164 (175)
Q Consensus 135 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 164 (175)
..+...++.|.+++..+.+.+.+.-.+-++
T Consensus 25 lPvMLf~~dRArfYSyLhrvW~KTSdkPVW 54 (63)
T PF10725_consen 25 LPVMLFRSDRARFYSYLHRVWSKTSDKPVW 54 (63)
T ss_pred hheeeeecchhHHHHHHHHHHHhcCCcchH
Confidence 344556678888888888877765554443
No 151
>PTZ00046 rifin; Provisional
Probab=21.39 E-value=46 Score=27.46 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=3.6
Q ss_pred hhcccchhh
Q 039964 138 LVKSSWRHH 146 (175)
Q Consensus 138 ~~~~~~r~~ 146 (175)
++..|.||+
T Consensus 335 YLILRYRRK 343 (358)
T PTZ00046 335 YLILRYRRK 343 (358)
T ss_pred HHHHHhhhc
Confidence 333344443
No 152
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=21.25 E-value=49 Score=23.00 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=15.5
Q ss_pred eeeeeehhHHHHHHHHHHHHHhhcccchh
Q 039964 117 GFYVSLILGFFVGFWGFCGTLLVKSSWRH 145 (175)
Q Consensus 117 ~~~~~~~~g~~~~~~~~~~~~~~~~~~r~ 145 (175)
.+++.+++|+...+++.+.+-+++-+++.
T Consensus 44 ~lYIL~vmgfFgff~~gImlsyvRSKK~E 72 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIMLSYVRSKKRE 72 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 46667777776666555555555444333
No 153
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=21.12 E-value=53 Score=23.51 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=11.7
Q ss_pred eeeeehhHHHHHHHHHHHHHhhcccchh
Q 039964 118 FYVSLILGFFVGFWGFCGTLLVKSSWRH 145 (175)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~~~~~~~r~ 145 (175)
+++++.+.+++.+++++++++-.+..|+
T Consensus 121 lilaisvtvv~~iliii~CLiei~shr~ 148 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFCLIEICSHRR 148 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444444444444444444444343433
No 154
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=21.04 E-value=47 Score=27.32 Aligned_cols=10 Identities=10% Similarity=0.341 Sum_probs=4.0
Q ss_pred Hhhcccchhh
Q 039964 137 LLVKSSWRHH 146 (175)
Q Consensus 137 ~~~~~~~r~~ 146 (175)
+++..|.||+
T Consensus 329 IYLILRYRRK 338 (353)
T TIGR01477 329 IYLILRYRRK 338 (353)
T ss_pred HHHHHHhhhc
Confidence 3333444443
No 155
>PHA03265 envelope glycoprotein D; Provisional
Probab=20.87 E-value=84 Score=25.96 Aligned_cols=11 Identities=27% Similarity=0.099 Sum_probs=4.3
Q ss_pred HHHHHHHHHhh
Q 039964 129 GFWGFCGTLLV 139 (175)
Q Consensus 129 ~~~~~~~~~~~ 139 (175)
+++++.+.+++
T Consensus 360 glv~vg~il~~ 370 (402)
T PHA03265 360 GLVLVGVILYV 370 (402)
T ss_pred hhhhhhHHHHH
Confidence 33333333443
No 156
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.54 E-value=1.8e+02 Score=21.26 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=5.0
Q ss_pred ccchhhhhhhh
Q 039964 141 SSWRHHYYNFL 151 (175)
Q Consensus 141 ~~~r~~~~~~~ 151 (175)
+.|.+.|+..+
T Consensus 69 ~~k~~p~m~Ev 79 (165)
T PF11286_consen 69 QLKTHPFMTEV 79 (165)
T ss_pred HHccChHHHHH
Confidence 34444444443
No 157
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=20.31 E-value=2.1e+02 Score=22.71 Aligned_cols=15 Identities=13% Similarity=-0.079 Sum_probs=7.1
Q ss_pred eeehhHHHHHHHHHH
Q 039964 120 VSLILGFFVGFWGFC 134 (175)
Q Consensus 120 ~~~~~g~~~~~~~~~ 134 (175)
++..+|++++++++.
T Consensus 73 v~~~~G~~~v~liLg 87 (279)
T PF07271_consen 73 VGGSAGLLAVALILG 87 (279)
T ss_pred ccchhhHHHHHHHHH
Confidence 445555555444433
Done!