Query 039964
Match_columns 175
No_of_seqs 250 out of 2601
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:29:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.7 1.5E-17 5.2E-22 145.6 6.6 93 1-94 659-752 (768)
2 3rgz_A Protein brassinosteroid 99.6 3E-15 1E-19 131.0 6.7 85 1-85 635-720 (768)
3 1w8a_A SLIT protein; signaling 99.5 1.5E-13 5E-18 101.3 7.5 85 1-85 32-118 (192)
4 3g39_A Variable lymphocyte rec 99.5 3.1E-13 1.1E-17 97.7 9.0 80 2-81 34-114 (170)
5 1ogq_A PGIP-2, polygalacturona 99.4 6E-14 2E-18 110.7 5.0 87 2-90 225-312 (313)
6 2r9u_A Variable lymphocyte rec 99.4 4.4E-13 1.5E-17 97.4 9.0 81 2-85 16-97 (174)
7 3j0a_A TOLL-like receptor 5; m 99.4 1.6E-13 5.4E-18 121.2 5.3 63 2-64 455-522 (844)
8 2wfh_A SLIT homolog 2 protein 99.4 1.5E-12 5.2E-17 96.0 9.2 85 1-86 34-119 (193)
9 2v70_A SLIT-2, SLIT homolog 2 99.4 2.3E-12 8E-17 96.8 9.1 82 2-83 36-119 (220)
10 2v70_A SLIT-2, SLIT homolog 2 99.4 1.9E-12 6.4E-17 97.3 8.4 85 1-85 60-145 (220)
11 1w8a_A SLIT protein; signaling 99.4 1.4E-12 4.7E-17 96.0 7.4 80 2-81 58-138 (192)
12 2v9t_B SLIT homolog 2 protein 99.4 3.4E-12 1.2E-16 95.9 9.2 83 2-84 36-119 (220)
13 2ifg_A High affinity nerve gro 99.3 2.6E-12 9E-17 102.2 8.3 82 1-82 34-116 (347)
14 2o6r_A Variable lymphocyte rec 99.3 7.8E-12 2.7E-16 90.4 9.7 86 1-86 31-117 (177)
15 2wfh_A SLIT homolog 2 protein 99.3 4.4E-12 1.5E-16 93.5 8.3 81 1-81 57-138 (193)
16 1ogq_A PGIP-2, polygalacturona 99.3 1.3E-12 4.5E-17 103.0 5.5 80 2-81 80-161 (313)
17 3g39_A Variable lymphocyte rec 99.3 7.5E-12 2.6E-16 90.4 8.9 83 1-86 12-95 (170)
18 2r9u_A Variable lymphocyte rec 99.3 8.3E-12 2.9E-16 90.6 9.1 82 1-82 36-118 (174)
19 3e6j_A Variable lymphocyte rec 99.3 8.9E-12 3E-16 94.0 9.6 86 1-86 43-129 (229)
20 2o6r_A Variable lymphocyte rec 99.3 9.8E-12 3.3E-16 89.9 9.1 83 1-83 55-138 (177)
21 1dce_A Protein (RAB geranylger 99.3 4.8E-12 1.6E-16 107.6 8.3 79 2-84 445-523 (567)
22 2v9t_B SLIT homolog 2 protein 99.3 1E-11 3.5E-16 93.2 8.6 86 1-86 59-145 (220)
23 3m19_A Variable lymphocyte rec 99.3 1.9E-11 6.4E-16 93.2 9.4 83 2-84 39-122 (251)
24 3m19_A Variable lymphocyte rec 99.3 1.8E-11 6.3E-16 93.3 9.4 86 1-86 62-148 (251)
25 2o6s_A Variable lymphocyte rec 99.3 2.8E-11 9.6E-16 89.6 9.7 86 1-86 31-117 (208)
26 4g8a_A TOLL-like receptor 4; l 99.3 7E-12 2.4E-16 106.0 6.9 85 1-85 55-140 (635)
27 3e6j_A Variable lymphocyte rec 99.3 2.6E-11 9.1E-16 91.4 9.3 85 1-86 67-152 (229)
28 2ell_A Acidic leucine-rich nuc 99.2 1.6E-11 5.6E-16 87.9 7.6 82 1-84 27-110 (168)
29 4g8a_A TOLL-like receptor 4; l 99.2 1.4E-11 4.8E-16 104.2 8.4 81 1-81 497-579 (635)
30 2je0_A Acidic leucine-rich nuc 99.2 8.4E-12 2.9E-16 87.7 5.5 82 1-84 20-103 (149)
31 2o6s_A Variable lymphocyte rec 99.2 4.3E-11 1.5E-15 88.6 9.6 86 1-86 55-141 (208)
32 2ifg_A High affinity nerve gro 99.2 1.5E-11 5.2E-16 97.7 7.5 83 2-86 12-97 (347)
33 2je0_A Acidic leucine-rich nuc 99.2 9.2E-12 3.1E-16 87.5 5.4 83 1-85 45-129 (149)
34 4ezg_A Putative uncharacterize 99.2 1.9E-11 6.7E-16 89.9 7.4 84 1-84 91-174 (197)
35 4fcg_A Uncharacterized protein 99.2 3.5E-11 1.2E-15 95.5 9.3 80 1-82 186-266 (328)
36 2ell_A Acidic leucine-rich nuc 99.2 1E-11 3.6E-16 89.0 5.5 84 1-86 52-137 (168)
37 3rfs_A Internalin B, repeat mo 99.2 4.6E-11 1.6E-15 92.2 9.5 86 1-86 88-174 (272)
38 4fcg_A Uncharacterized protein 99.2 2.3E-11 8E-16 96.5 7.7 83 1-84 209-292 (328)
39 3rfs_A Internalin B, repeat mo 99.2 6.2E-11 2.1E-15 91.4 9.5 82 2-85 67-149 (272)
40 1p9a_G Platelet glycoprotein I 99.2 6.4E-11 2.2E-15 92.5 9.2 85 1-86 80-165 (290)
41 1dce_A Protein (RAB geranylger 99.2 2.9E-11 1E-15 102.8 7.8 83 1-86 466-550 (567)
42 1p9a_G Platelet glycoprotein I 99.2 7.9E-11 2.7E-15 91.9 9.6 86 1-86 103-189 (290)
43 2xot_A Amphoterin-induced prot 99.2 3.5E-11 1.2E-15 96.5 7.7 82 2-83 43-126 (361)
44 3v47_A TOLL-like receptor 5B a 99.2 4.4E-11 1.5E-15 98.0 8.1 83 2-84 303-386 (455)
45 3v47_A TOLL-like receptor 5B a 99.2 6.9E-11 2.4E-15 96.8 8.7 83 1-83 326-409 (455)
46 1wwl_A Monocyte differentiatio 99.2 3.4E-11 1.2E-15 94.6 6.4 82 1-83 98-187 (312)
47 4b8c_D Glucose-repressible alc 99.2 3.5E-11 1.2E-15 105.0 6.3 77 3-82 252-329 (727)
48 1xku_A Decorin; proteoglycan, 99.1 1.5E-10 5.1E-15 91.4 9.2 90 1-91 195-285 (330)
49 2xot_A Amphoterin-induced prot 99.1 7.6E-11 2.6E-15 94.6 7.5 86 1-86 67-153 (361)
50 4eco_A Uncharacterized protein 99.1 1.7E-11 6E-16 105.2 4.0 84 1-84 209-320 (636)
51 2o6q_A Variable lymphocyte rec 99.1 2.2E-10 7.5E-15 88.2 9.7 86 1-86 88-174 (270)
52 1a9n_A U2A', U2A'; complex (nu 99.1 4.7E-11 1.6E-15 86.3 5.5 80 2-85 23-104 (176)
53 3zyi_A Leucine-rich repeat-con 99.1 9.4E-11 3.2E-15 96.5 7.4 85 1-85 78-163 (452)
54 2z66_A Variable lymphocyte rec 99.1 1.5E-10 5.1E-15 90.3 7.9 86 1-86 153-240 (306)
55 2o6q_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 87.0 9.7 86 1-86 64-150 (270)
56 1ozn_A Reticulon 4 receptor; N 99.1 1.9E-10 6.6E-15 88.9 8.2 84 1-84 108-192 (285)
57 1ozn_A Reticulon 4 receptor; N 99.1 3.3E-10 1.1E-14 87.6 9.2 81 2-82 60-142 (285)
58 3vq2_A TLR4, TOLL-like recepto 99.1 1.8E-10 6E-15 97.7 8.2 85 1-85 35-120 (606)
59 4b8c_D Glucose-repressible alc 99.1 1.9E-10 6.4E-15 100.4 8.5 84 1-87 227-311 (727)
60 2z7x_B TOLL-like receptor 1, v 99.1 1.3E-10 4.6E-15 96.8 7.2 81 1-83 24-104 (520)
61 2z81_A CD282 antigen, TOLL-lik 99.1 1.1E-10 3.8E-15 97.7 6.5 83 1-83 29-112 (549)
62 3t6q_A CD180 antigen; protein- 99.1 1.4E-10 4.7E-15 98.3 7.2 83 1-83 36-119 (606)
63 2z62_A TOLL-like receptor 4, v 99.1 2.2E-10 7.4E-15 88.2 7.5 84 1-84 31-115 (276)
64 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 2E-10 6.9E-15 96.9 7.8 83 1-85 55-137 (562)
65 4ezg_A Putative uncharacterize 99.1 2.3E-10 7.8E-15 84.2 7.1 81 1-83 115-195 (197)
66 2z66_A Variable lymphocyte rec 99.1 1.6E-10 5.3E-15 90.2 6.5 85 1-85 129-215 (306)
67 2ft3_A Biglycan; proteoglycan, 99.1 2.3E-10 7.9E-15 90.4 7.1 89 1-90 196-285 (332)
68 3zyi_A Leucine-rich repeat-con 99.1 2.6E-10 9E-15 93.8 7.6 80 1-80 221-301 (452)
69 2z63_A TOLL-like receptor 4, v 99.1 2.5E-10 8.5E-15 95.8 7.6 86 1-86 424-511 (570)
70 3oja_B Anopheles plasmodium-re 99.1 3.8E-10 1.3E-14 96.1 8.7 83 2-84 79-162 (597)
71 3oja_B Anopheles plasmodium-re 99.1 4.2E-10 1.4E-14 95.8 8.9 85 1-85 102-187 (597)
72 2id5_A Lingo-1, leucine rich r 99.1 2.9E-10 9.8E-15 93.9 7.7 84 1-84 35-119 (477)
73 3vq2_A TLR4, TOLL-like recepto 99.1 3.4E-10 1.2E-14 95.9 8.2 83 1-83 59-142 (606)
74 3zyj_A Leucine-rich repeat-con 99.1 3.4E-10 1.2E-14 92.9 7.9 84 1-84 67-151 (440)
75 4ecn_A Leucine-rich repeat pro 99.1 5.4E-11 1.8E-15 105.7 3.2 83 2-85 495-589 (876)
76 3zyj_A Leucine-rich repeat-con 99.1 2.9E-10 9.8E-15 93.3 7.3 81 1-81 210-291 (440)
77 2z80_A TOLL-like receptor 2, v 99.1 2E-10 7E-15 91.4 6.3 83 2-84 56-139 (353)
78 3t6q_A CD180 antigen; protein- 99.0 3.5E-10 1.2E-14 95.8 7.9 84 1-84 60-144 (606)
79 2z62_A TOLL-like receptor 4, v 99.0 5E-10 1.7E-14 86.2 8.0 83 1-83 55-138 (276)
80 4eco_A Uncharacterized protein 99.0 6.1E-10 2.1E-14 95.6 9.3 84 1-86 491-583 (636)
81 2xwt_C Thyrotropin receptor; s 99.0 2.6E-10 8.8E-15 86.1 6.2 86 1-86 34-122 (239)
82 4glp_A Monocyte differentiatio 99.0 2.4E-10 8.2E-15 89.6 6.1 83 1-86 200-289 (310)
83 3oja_A Leucine-rich immune mol 99.0 1.2E-10 4.2E-15 97.1 4.7 81 2-83 124-205 (487)
84 2z63_A TOLL-like receptor 4, v 99.0 3.2E-10 1.1E-14 95.2 7.0 84 1-84 399-485 (570)
85 4glp_A Monocyte differentiatio 99.0 5.5E-10 1.9E-14 87.5 7.7 83 1-83 94-183 (310)
86 2z7x_B TOLL-like receptor 1, v 99.0 3.7E-10 1.3E-14 94.1 6.8 82 1-82 327-412 (520)
87 3o6n_A APL1; leucine-rich repe 99.0 8.4E-10 2.9E-14 88.9 8.7 82 2-83 73-155 (390)
88 4ecn_A Leucine-rich repeat pro 99.0 2.2E-10 7.4E-15 101.8 5.5 83 1-85 518-611 (876)
89 1wwl_A Monocyte differentiatio 99.0 1.8E-10 6E-15 90.5 4.4 58 2-60 125-187 (312)
90 2ft3_A Biglycan; proteoglycan, 99.0 8.9E-10 3.1E-14 87.0 8.5 83 1-85 57-139 (332)
91 3o6n_A APL1; leucine-rich repe 99.0 1.1E-09 3.8E-14 88.2 9.0 83 1-84 96-180 (390)
92 3j0a_A TOLL-like receptor 5; m 99.0 6.2E-10 2.1E-14 98.3 7.7 43 18-60 69-111 (844)
93 1ziw_A TOLL-like receptor 3; i 99.0 1.1E-09 3.7E-14 94.1 8.9 83 2-84 29-112 (680)
94 1ziw_A TOLL-like receptor 3; i 99.0 1.1E-09 3.6E-14 94.2 8.8 86 1-86 52-138 (680)
95 2id5_A Lingo-1, leucine rich r 99.0 6E-10 2E-14 92.0 6.9 82 1-82 59-141 (477)
96 3oja_A Leucine-rich immune mol 99.0 2E-10 7E-15 95.7 3.9 84 1-86 147-231 (487)
97 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 8.4E-10 2.9E-14 93.1 7.5 82 1-82 356-441 (562)
98 1xku_A Decorin; proteoglycan, 99.0 1.4E-09 4.9E-14 85.7 8.4 81 1-83 55-135 (330)
99 2z81_A CD282 antigen, TOLL-lik 99.0 1E-09 3.5E-14 91.9 7.9 80 1-80 53-134 (549)
100 1a9n_A U2A', U2A'; complex (nu 99.0 4.7E-10 1.6E-14 81.0 4.7 82 1-85 45-129 (176)
101 2xwt_C Thyrotropin receptor; s 99.0 8.1E-10 2.8E-14 83.3 6.0 85 1-86 58-148 (239)
102 2z80_A TOLL-like receptor 2, v 98.9 1.9E-09 6.6E-14 85.8 7.3 84 1-84 79-165 (353)
103 1xeu_A Internalin C; cellular 98.9 3.2E-09 1.1E-13 81.6 7.5 79 2-85 110-188 (263)
104 4fmz_A Internalin; leucine ric 98.9 2.8E-09 9.5E-14 84.3 7.0 80 1-84 246-326 (347)
105 3o53_A Protein LRIM1, AGAP0063 98.9 1.3E-09 4.3E-14 85.8 4.6 83 2-85 124-207 (317)
106 1xeu_A Internalin C; cellular 98.9 7E-09 2.4E-13 79.7 8.4 77 1-83 44-120 (263)
107 1m9s_A Internalin B; cell inva 98.9 3.9E-09 1.3E-13 90.4 7.4 79 2-85 135-213 (605)
108 1h6t_A Internalin B; cell adhe 98.9 7.1E-09 2.4E-13 80.8 8.0 61 18-81 130-190 (291)
109 3cvr_A Invasion plasmid antige 98.8 7E-09 2.4E-13 88.2 8.4 15 69-83 180-194 (571)
110 1ds9_A Outer arm dynein; leuci 98.8 7.3E-11 2.5E-15 86.9 -3.6 78 3-83 23-107 (198)
111 1m9s_A Internalin B; cell inva 98.8 8.4E-09 2.9E-13 88.3 8.2 80 1-85 112-191 (605)
112 1h6t_A Internalin B; cell adhe 98.8 5.8E-09 2E-13 81.2 6.7 81 1-86 137-217 (291)
113 1h6u_A Internalin H; cell adhe 98.8 1E-08 3.5E-13 80.4 7.8 54 2-59 89-142 (308)
114 1h6u_A Internalin H; cell adhe 98.8 1E-08 3.6E-13 80.4 7.5 54 2-59 111-164 (308)
115 3o53_A Protein LRIM1, AGAP0063 98.8 6.7E-09 2.3E-13 81.6 6.1 84 1-86 147-231 (317)
116 3cvr_A Invasion plasmid antige 98.8 1.4E-08 4.8E-13 86.4 8.3 74 2-86 104-177 (571)
117 1jl5_A Outer protein YOPM; leu 98.8 1.5E-08 5.2E-13 83.7 8.2 75 2-83 135-209 (454)
118 1o6v_A Internalin A; bacterial 98.8 1.1E-08 3.7E-13 84.4 6.8 79 2-85 313-391 (466)
119 1ds9_A Outer arm dynein; leuci 98.8 2.4E-10 8.3E-15 84.1 -2.9 80 1-84 51-130 (198)
120 4ay9_X Follicle-stimulating ho 98.8 1.4E-08 4.7E-13 81.0 7.0 85 1-86 33-121 (350)
121 3bz5_A Internalin-J, INLJ; leu 98.7 3.5E-08 1.2E-12 81.6 8.8 76 2-85 174-249 (457)
122 1jl5_A Outer protein YOPM; leu 98.7 1.4E-09 4.7E-14 90.0 0.3 59 1-60 14-85 (454)
123 1o6v_A Internalin A; bacterial 98.7 2.9E-08 1E-12 81.8 7.8 76 2-82 269-344 (466)
124 3bz5_A Internalin-J, INLJ; leu 98.7 4.5E-08 1.5E-12 80.9 8.8 77 1-84 45-121 (457)
125 3rw6_A Nuclear RNA export fact 98.7 3E-09 1E-13 82.4 1.0 64 19-83 167-234 (267)
126 3rw6_A Nuclear RNA export fact 98.7 1.6E-08 5.5E-13 78.2 4.4 73 1-75 173-257 (267)
127 2ca6_A RAN GTPase-activating p 98.7 3.8E-09 1.3E-13 85.0 0.7 84 1-84 219-318 (386)
128 4fmz_A Internalin; leucine ric 98.6 3.3E-08 1.1E-12 78.1 5.9 79 1-84 224-302 (347)
129 3goz_A Leucine-rich repeat-con 98.6 1.2E-08 4E-13 81.7 2.8 81 2-82 26-122 (362)
130 2ast_B S-phase kinase-associat 98.6 5.6E-09 1.9E-13 82.1 0.6 77 2-79 74-152 (336)
131 3goz_A Leucine-rich repeat-con 98.6 2E-08 7E-13 80.2 2.7 83 2-84 2-95 (362)
132 3g06_A SSPH2 (leucine-rich rep 98.6 1E-07 3.5E-12 81.9 6.9 73 2-83 225-298 (622)
133 2ast_B S-phase kinase-associat 98.5 2.7E-08 9.3E-13 78.2 2.3 83 1-83 96-183 (336)
134 3g06_A SSPH2 (leucine-rich rep 98.5 3.2E-07 1.1E-11 78.8 8.5 15 69-83 141-155 (622)
135 2ca6_A RAN GTPase-activating p 98.5 4.7E-08 1.6E-12 78.6 2.2 41 19-59 91-135 (386)
136 4ay9_X Follicle-stimulating ho 98.4 5.7E-07 2E-11 71.5 6.2 80 2-85 158-240 (350)
137 1z7x_W Ribonuclease inhibitor; 98.3 7.3E-08 2.5E-12 78.8 -0.2 82 1-82 287-383 (461)
138 1z7x_W Ribonuclease inhibitor; 98.1 5.3E-07 1.8E-11 73.6 0.2 35 2-36 89-127 (461)
139 3un9_A NLR family member X1; l 98.1 5.4E-07 1.8E-11 72.7 0.1 41 19-59 180-224 (372)
140 3rfe_A Platelet glycoprotein I 97.9 1.9E-05 6.6E-10 54.3 5.7 56 2-59 12-68 (130)
141 3un9_A NLR family member X1; l 97.8 2.4E-06 8.2E-11 68.9 0.1 81 2-82 130-224 (372)
142 3ogk_B Coronatine-insensitive 97.8 2.9E-06 1E-10 71.3 0.2 82 2-83 440-527 (592)
143 3ogk_B Coronatine-insensitive 97.6 2.6E-05 8.9E-10 65.5 3.2 61 1-61 466-528 (592)
144 1io0_A Tropomodulin; LRR prote 97.6 1.7E-05 6E-10 57.5 1.3 81 1-81 39-135 (185)
145 1io0_A Tropomodulin; LRR prote 97.5 1E-05 3.4E-10 58.8 -0.4 81 1-81 68-163 (185)
146 2p1m_B Transport inhibitor res 97.5 9E-06 3.1E-10 68.3 -0.7 61 21-81 455-518 (594)
147 3sb4_A Hypothetical leucine ri 97.4 0.00018 6.2E-09 56.4 5.4 82 1-84 229-312 (329)
148 2p1m_B Transport inhibitor res 97.3 5.9E-05 2E-09 63.3 1.8 79 1-79 108-194 (594)
149 2ra8_A Uncharacterized protein 96.9 0.00019 6.5E-09 57.6 0.9 63 20-82 250-320 (362)
150 3rfe_A Platelet glycoprotein I 96.8 0.0024 8.3E-08 43.6 5.5 55 25-81 11-67 (130)
151 3e4g_A ATP synthase subunit S, 96.7 0.00056 1.9E-08 49.5 1.5 31 2-32 65-95 (176)
152 2ra8_A Uncharacterized protein 96.6 0.0011 3.7E-08 53.2 2.7 83 1-83 196-293 (362)
153 3sb4_A Hypothetical leucine ri 96.5 0.0039 1.3E-07 48.7 5.4 73 1-75 253-327 (329)
154 1pgv_A TMD-1, tropomodulin TMD 94.1 0.024 8.1E-07 41.6 2.3 42 18-59 66-111 (197)
155 2ks1_B Epidermal growth factor 94.0 0.031 1.1E-06 30.7 2.0 27 118-144 13-39 (44)
156 4fdw_A Leucine rich hypothetic 93.5 0.24 8.4E-06 39.8 7.5 75 2-79 252-333 (401)
157 4fdw_A Leucine rich hypothetic 93.3 0.17 5.7E-06 40.8 6.3 38 16-54 174-211 (401)
158 1pgv_A TMD-1, tropomodulin TMD 92.6 0.042 1.4E-06 40.2 1.6 56 1-56 73-136 (197)
159 2l2t_A Receptor tyrosine-prote 91.2 0.086 3E-06 28.8 1.4 27 118-144 12-38 (44)
160 2k1k_A Ephrin type-A receptor 90.6 0.078 2.7E-06 28.1 0.9 24 116-139 10-33 (38)
161 3e4g_A ATP synthase subunit S, 90.6 0.23 7.7E-06 35.6 3.6 61 22-82 61-128 (176)
162 2jwa_A Receptor tyrosine-prote 86.5 0.14 4.9E-06 27.9 0.1 13 118-130 13-25 (44)
163 4fs7_A Uncharacterized protein 82.1 2.8 9.7E-05 33.0 6.1 36 18-55 293-329 (394)
164 4h09_A Hypothetical leucine ri 79.0 4.8 0.00016 31.3 6.4 36 18-54 282-318 (379)
165 2k9y_A Ephrin type-A receptor 78.2 0.73 2.5E-05 24.4 0.9 10 119-128 16-25 (41)
166 4gt6_A Cell surface protein; l 74.6 6.9 0.00024 30.8 6.2 35 18-54 284-319 (394)
167 2l9u_A Receptor tyrosine-prote 68.3 2.7 9.3E-05 21.4 1.5 26 119-144 9-34 (40)
168 1iij_A ERBB-2 receptor protein 67.8 0.34 1.2E-05 25.0 -1.9 7 119-125 10-16 (35)
169 4h09_A Hypothetical leucine ri 66.7 5.6 0.00019 30.9 4.0 53 2-56 290-343 (379)
170 4fs7_A Uncharacterized protein 64.9 5.4 0.00018 31.4 3.6 61 15-79 313-376 (394)
171 4gt6_A Cell surface protein; l 60.4 15 0.00051 28.8 5.4 60 16-79 305-367 (394)
172 2l34_A TYRO protein tyrosine k 58.9 3.6 0.00012 20.8 1.0 25 117-141 7-31 (33)
173 2klu_A T-cell surface glycopro 47.3 14 0.00047 21.8 2.3 13 122-134 12-24 (70)
174 2llm_A Amyloid beta A4 protein 38.0 9.8 0.00034 20.4 0.0 7 118-124 18-24 (43)
175 1q55_A EP-cadherin, C-cadherin 24.6 16 0.00054 32.5 0.0 19 117-135 705-723 (880)
176 3s8f_C Cytochrome C oxidase po 20.5 30 0.001 17.5 0.6 12 124-135 16-27 (34)
177 2lp1_A C99; alzheimer'S D memb 25.3 22 0.00076 23.4 0.0 24 118-141 31-54 (122)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.69 E-value=1.5e-17 Score=145.57 Aligned_cols=93 Identities=40% Similarity=0.713 Sum_probs=77.1
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc-
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN- 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N- 79 (175)
+.|+|++|.++|.||++++++++|+.|||++|+++|.+|..+..+++|++||+++|+++|.+|...++.++....+.||
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence 4688888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCCCCCCCCCCCCC
Q 039964 80 ELCGLPLPNKCPTEE 94 (175)
Q Consensus 80 ~l~~~p~~~~c~~~~ 94 (175)
.|||.|.. .|....
T Consensus 739 ~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 739 GLCGYPLP-RCDPSN 752 (768)
T ss_dssp EEESTTSC-CCCSCC
T ss_pred hhcCCCCc-CCCCCc
Confidence 78988876 786544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.56 E-value=3e-15 Score=131.05 Aligned_cols=85 Identities=32% Similarity=0.520 Sum_probs=80.7
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|||++|+++|.+|.+++++++|+.|||++|.++|.+|..++++++|+.|||++|+++|.+|.. ..+++|+.+++++|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999987 77889999999999
Q ss_pred cCCCCC
Q 039964 80 ELCGLP 85 (175)
Q Consensus 80 ~l~~~p 85 (175)
.+.|..
T Consensus 715 ~l~g~i 720 (768)
T 3rgz_A 715 NLSGPI 720 (768)
T ss_dssp EEEEEC
T ss_pred cccccC
Confidence 988753
No 3
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=1.5e-13 Score=101.25 Aligned_cols=85 Identities=20% Similarity=0.178 Sum_probs=66.4
Q ss_pred CEEEeecCccccCCCh-hhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITP-KIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~-~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~ 78 (175)
++|+|++|.+++..+. .+..+++|+.|+|++|.+++..|..+..+++|++|+|++|++++..|.. ..+++|+.+++++
T Consensus 32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 4688888888765543 3788888888888888888777888888888888888888888777764 5677888888888
Q ss_pred ccCCCCC
Q 039964 79 NELCGLP 85 (175)
Q Consensus 79 N~l~~~p 85 (175)
|.+.+.+
T Consensus 112 N~l~~~~ 118 (192)
T 1w8a_A 112 NQISCVM 118 (192)
T ss_dssp SCCCEEC
T ss_pred CcCCeeC
Confidence 8777653
No 4
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.1e-13 Score=97.73 Aligned_cols=80 Identities=21% Similarity=0.192 Sum_probs=50.9
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~ 80 (175)
+|+|++|.+++..|..|..+++|+.|||++|+|++..|..+..+++|++|+|++|++++..|.. ..+.+|+.+++++|.
T Consensus 34 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 5666666666655666666666666666666666444444566666666666666666655543 455666666666664
Q ss_pred C
Q 039964 81 L 81 (175)
Q Consensus 81 l 81 (175)
+
T Consensus 114 ~ 114 (170)
T 3g39_A 114 W 114 (170)
T ss_dssp B
T ss_pred C
Confidence 4
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.44 E-value=6e-14 Score=110.68 Aligned_cols=87 Identities=39% Similarity=0.694 Sum_probs=61.0
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc-c
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN-E 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N-~ 80 (175)
+|+|++|.+++.+|. +..+++|+.|||++|.++|.+|..+..+++|+.|++++|+++|.+|....++++..+++.+| .
T Consensus 225 ~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp EEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred EEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 456666666654444 56666777777777777777777777777777777777777777777766777777777777 5
Q ss_pred CCCCCCCCCC
Q 039964 81 LCGLPLPNKC 90 (175)
Q Consensus 81 l~~~p~~~~c 90 (175)
+||.|.. .|
T Consensus 304 lc~~p~~-~C 312 (313)
T 1ogq_A 304 LCGSPLP-AC 312 (313)
T ss_dssp EESTTSS-CC
T ss_pred ccCCCCC-CC
Confidence 7776654 35
No 6
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=4.4e-13 Score=97.42 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=45.9
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~ 80 (175)
.+++++|.++ .+|..+. ++|+.|+|++|.+++..|..+..+++|+.|+|++|++++.++.. ..+.+|+.+++++|.
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4556666654 5555443 55666666666666555555566666666666666666544433 445556666666665
Q ss_pred CCCCC
Q 039964 81 LCGLP 85 (175)
Q Consensus 81 l~~~p 85 (175)
+.+.+
T Consensus 93 l~~l~ 97 (174)
T 2r9u_A 93 LKSIP 97 (174)
T ss_dssp CCCCC
T ss_pred cceeC
Confidence 55443
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.40 E-value=1.6e-13 Score=121.24 Aligned_cols=63 Identities=21% Similarity=0.068 Sum_probs=37.2
Q ss_pred EEEeecCccc-----cCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC
Q 039964 2 WLACVHFSLT-----GQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS 64 (175)
Q Consensus 2 ~L~Ls~N~l~-----g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~ 64 (175)
+|+|++|.++ +..|..+..+++|+.|||++|++++..|..+..+++|+.|+|++|++++.+|.
T Consensus 455 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 522 (844)
T 3j0a_A 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522 (844)
T ss_dssp BCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCC
T ss_pred cccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChh
Confidence 4566666665 33344455666666666666666655555566666666666666666654443
No 8
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.5e-12 Score=96.00 Aligned_cols=85 Identities=27% Similarity=0.338 Sum_probs=72.8
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.++ .+|..+..+++|+.|||++|.+++..|..+..+++|++|+|++|++++..|.. ..+++|+.+++++|
T Consensus 34 ~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence 47899999998 78888999999999999999999777778899999999999999999877764 67788999999999
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.+.
T Consensus 113 ~l~~~~~ 119 (193)
T 2wfh_A 113 DISVVPE 119 (193)
T ss_dssp CCCBCCT
T ss_pred CCCeeCh
Confidence 8876654
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=2.3e-12 Score=96.77 Aligned_cols=82 Identities=17% Similarity=0.099 Sum_probs=36.9
Q ss_pred EEEeecCccccCCC-hhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 2 WLACVHFSLTGQIT-PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP-~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
+|+|++|.+++..| ..|..+++|+.|+|++|.+++..|..+..+++|++|+|++|++++..|.. ..+.+|+.+++++|
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence 34555555544322 22444444555555555544433334444444444444444444444332 33444444444444
Q ss_pred cCCC
Q 039964 80 ELCG 83 (175)
Q Consensus 80 ~l~~ 83 (175)
.+.+
T Consensus 116 ~l~~ 119 (220)
T 2v70_A 116 RITC 119 (220)
T ss_dssp CCCC
T ss_pred cCCe
Confidence 4443
No 10
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=97.31 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=73.9
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+..+++|++|+|++|++++..|.. ..+.+|+.+++++|
T Consensus 60 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 60 RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence 47899999999777778999999999999999999777777899999999999999999887775 67788999999999
Q ss_pred cCCCCC
Q 039964 80 ELCGLP 85 (175)
Q Consensus 80 ~l~~~p 85 (175)
.+.+.+
T Consensus 140 ~l~~~~ 145 (220)
T 2v70_A 140 QITTVA 145 (220)
T ss_dssp CCCCBC
T ss_pred cCCEEC
Confidence 887764
No 11
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=1.4e-12 Score=96.00 Aligned_cols=80 Identities=23% Similarity=0.246 Sum_probs=46.2
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~ 80 (175)
+|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+..+++|++|+|++|++++.+|.. ..+++++.+++++|.
T Consensus 58 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred EEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 4556666666555555666666666666666666555555555666666666666666555544 445555556665554
Q ss_pred C
Q 039964 81 L 81 (175)
Q Consensus 81 l 81 (175)
+
T Consensus 138 l 138 (192)
T 1w8a_A 138 F 138 (192)
T ss_dssp B
T ss_pred c
Confidence 4
No 12
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=3.4e-12 Score=95.86 Aligned_cols=83 Identities=20% Similarity=0.119 Sum_probs=52.3
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~ 80 (175)
.|+|++|.+++..+..|..+++|+.|+|++|.+++..|..+..+++|++|+|++|+++...+.. ..+.+|+.+++++|.
T Consensus 36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC
Confidence 5666666666544556666666666666666666555666666666666666666666444433 445666666666666
Q ss_pred CCCC
Q 039964 81 LCGL 84 (175)
Q Consensus 81 l~~~ 84 (175)
+.+.
T Consensus 116 l~~~ 119 (220)
T 2v9t_B 116 INCL 119 (220)
T ss_dssp CCCC
T ss_pred CCEe
Confidence 5554
No 13
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=2.6e-12 Score=102.15 Aligned_cols=82 Identities=22% Similarity=0.139 Sum_probs=68.7
Q ss_pred CEEEeec-CccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964 1 MWLACVH-FSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~-N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N 79 (175)
+.|+|++ |.|++..|..|..|++|+.|||++|+|+|..|..|.++++|+.|||++|+|++.+|.......|+.+++.+|
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCC
Confidence 4789996 999977778899999999999999999988888899999999999999999977766533334888999998
Q ss_pred cCC
Q 039964 80 ELC 82 (175)
Q Consensus 80 ~l~ 82 (175)
.+.
T Consensus 114 ~~~ 116 (347)
T 2ifg_A 114 PLH 116 (347)
T ss_dssp CCC
T ss_pred Ccc
Confidence 553
No 14
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=7.8e-12 Score=90.45 Aligned_cols=86 Identities=22% Similarity=0.226 Sum_probs=69.7
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.++.. ..+.+++.+++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence 46889999988666666788899999999999998655556788999999999999998777764 66788899999998
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.|.
T Consensus 111 ~l~~~~~ 117 (177)
T 2o6r_A 111 QLKSVPD 117 (177)
T ss_dssp CCSCCCT
T ss_pred cceEeCH
Confidence 8876654
No 15
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=4.4e-12 Score=93.51 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=73.0
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+.. ..++++..+++++|
T Consensus 57 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 57999999999877788999999999999999999877788999999999999999999766654 67889999999999
Q ss_pred cC
Q 039964 80 EL 81 (175)
Q Consensus 80 ~l 81 (175)
.+
T Consensus 137 ~~ 138 (193)
T 2wfh_A 137 PL 138 (193)
T ss_dssp CE
T ss_pred Ce
Confidence 65
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.32 E-value=1.3e-12 Score=102.97 Aligned_cols=80 Identities=33% Similarity=0.599 Sum_probs=36.8
Q ss_pred EEEeec-CccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 2 WLACVH-FSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 2 ~L~Ls~-N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
+|+|++ |.+.+.+|..++++++|+.|+|++|.++|.+|..+..+++|++|++++|.+++.+|.. ..+++++.+++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 344442 4444444444444444444444444444444444444444444444444444444433 33444444444444
Q ss_pred cC
Q 039964 80 EL 81 (175)
Q Consensus 80 ~l 81 (175)
.+
T Consensus 160 ~l 161 (313)
T 1ogq_A 160 RI 161 (313)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 17
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.31 E-value=7.5e-12 Score=90.41 Aligned_cols=83 Identities=24% Similarity=0.292 Sum_probs=74.2
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
+.|++++|.++ .+|..+. ++|+.|+|++|.+++..|..+..+++|++|+|++|++++..|.. ..+++|+.+++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 47899999998 6898775 89999999999999888889999999999999999999887765 67899999999999
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.+.
T Consensus 89 ~l~~~~~ 95 (170)
T 3g39_A 89 QLKSIPR 95 (170)
T ss_dssp CCCCCCT
T ss_pred ccCEeCH
Confidence 9887664
No 18
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=8.3e-12 Score=90.60 Aligned_cols=82 Identities=18% Similarity=0.139 Sum_probs=72.8
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC-CcccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS-GTQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~-~~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|..+++|+.|+|++|+|++..+..+..+++|++|+|++|++++.++. ...+++|+.+++++|
T Consensus 36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 5799999999988899999999999999999999965555578999999999999999987776 367889999999999
Q ss_pred cCC
Q 039964 80 ELC 82 (175)
Q Consensus 80 ~l~ 82 (175)
.+.
T Consensus 116 ~~~ 118 (174)
T 2r9u_A 116 PWD 118 (174)
T ss_dssp CBC
T ss_pred Ccc
Confidence 764
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=8.9e-12 Score=94.05 Aligned_cols=86 Identities=24% Similarity=0.185 Sum_probs=69.9
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+.. ..+.+|+.+++++|
T Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 47899999999877888889999999999999997544455788899999999999998776664 56788888888888
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+...|.
T Consensus 123 ~l~~lp~ 129 (229)
T 3e6j_A 123 KLTELPR 129 (229)
T ss_dssp CCCSCCT
T ss_pred cccccCc
Confidence 7776543
No 20
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.30 E-value=9.8e-12 Score=89.91 Aligned_cols=83 Identities=17% Similarity=0.132 Sum_probs=72.1
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|++|++++|++++.++.. ..+++++.+++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 57999999999666666899999999999999999766667899999999999999999777665 56889999999999
Q ss_pred cCCC
Q 039964 80 ELCG 83 (175)
Q Consensus 80 ~l~~ 83 (175)
.+.+
T Consensus 135 ~~~~ 138 (177)
T 2o6r_A 135 PWDC 138 (177)
T ss_dssp CBCC
T ss_pred Ceec
Confidence 7654
No 21
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=4.8e-12 Score=107.63 Aligned_cols=79 Identities=28% Similarity=0.317 Sum_probs=55.7
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
+|+|++|.+++ +|. ++.+++|+.|+|++|.|+ .+|..++.+++|+.|+|++|++++ +|....+++|+.+++++|.+
T Consensus 445 ~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 445 VLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRL 520 (567)
T ss_dssp EEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCC
T ss_pred EEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCC
Confidence 57777777774 665 777777777777777777 677777777777777777777776 45445666777777777766
Q ss_pred CCC
Q 039964 82 CGL 84 (175)
Q Consensus 82 ~~~ 84 (175)
.+.
T Consensus 521 ~~~ 523 (567)
T 1dce_A 521 QQS 523 (567)
T ss_dssp CSS
T ss_pred CCC
Confidence 665
No 22
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=1e-11 Score=93.20 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=75.7
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|..+++|+.|+|++|.++...+..+..+++|+.|+|++|++++..|.. ..+++|+.+++++|
T Consensus 59 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 59 RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp CEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 57999999999888999999999999999999999544445788999999999999999988876 67889999999999
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.+.
T Consensus 139 ~l~~~~~ 145 (220)
T 2v9t_B 139 KLQTIAK 145 (220)
T ss_dssp CCSCCCT
T ss_pred cCCEECH
Confidence 9887654
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.27 E-value=1.9e-11 Score=93.24 Aligned_cols=83 Identities=23% Similarity=0.256 Sum_probs=43.9
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~ 80 (175)
.|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++|++++|++++..|.. ..+++|+.+++++|.
T Consensus 39 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 118 (251)
T 3m19_A 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc
Confidence 4555555555555555555555555555555555544444555555555555555555444433 344445555555554
Q ss_pred CCCC
Q 039964 81 LCGL 84 (175)
Q Consensus 81 l~~~ 84 (175)
+.+.
T Consensus 119 l~~~ 122 (251)
T 3m19_A 119 LKSL 122 (251)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 4433
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.27 E-value=1.8e-11 Score=93.28 Aligned_cols=86 Identities=22% Similarity=0.241 Sum_probs=68.5
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..+..+++|+.|+|++|.+++..+..+..+++|++|++++|++++..+.. ..+.+++.+++++|
T Consensus 62 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 47888888888777777888888888888888888666667788888888888888888766654 56778888888888
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.+.
T Consensus 142 ~l~~~~~ 148 (251)
T 3m19_A 142 QLQSIPA 148 (251)
T ss_dssp CCCCCCT
T ss_pred cCCccCH
Confidence 7776654
No 25
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.26 E-value=2.8e-11 Score=89.59 Aligned_cols=86 Identities=24% Similarity=0.256 Sum_probs=62.1
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+.. ..+++++.+++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence 46788888887555555777888888888888887544445677888888888888887666554 56677778888877
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.+.
T Consensus 111 ~l~~~~~ 117 (208)
T 2o6s_A 111 QLQSLPD 117 (208)
T ss_dssp CCCCCCT
T ss_pred cCcccCH
Confidence 7766543
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.25 E-value=7e-12 Score=106.04 Aligned_cols=85 Identities=22% Similarity=0.151 Sum_probs=59.8
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|||++|++++..|..|.++++|+.|||++|++++..|..|.++++|++|+|++|++++.+|.. ..+.+|+.+++++|
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 46777788777655567777777777777777777555556777777777777777777655543 55667777777777
Q ss_pred cCCCCC
Q 039964 80 ELCGLP 85 (175)
Q Consensus 80 ~l~~~p 85 (175)
.+.+.+
T Consensus 135 ~l~~l~ 140 (635)
T 4g8a_A 135 NLASLE 140 (635)
T ss_dssp CCCCST
T ss_pred cCCCCC
Confidence 666554
No 27
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.25 E-value=2.6e-11 Score=91.43 Aligned_cols=85 Identities=26% Similarity=0.286 Sum_probs=70.9
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..+..|..+++|+.|||++|.+++..+..+..+++|+.|++++|+++ .+|.. ..+.+|+.+++++|
T Consensus 67 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSS
T ss_pred cEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCC
Confidence 47999999997544466789999999999999999666666789999999999999999 55554 77889999999999
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.+.
T Consensus 146 ~l~~~~~ 152 (229)
T 3e6j_A 146 QLKSIPH 152 (229)
T ss_dssp CCCCCCT
T ss_pred cCCccCH
Confidence 8887654
No 28
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=1.6e-11 Score=87.91 Aligned_cols=82 Identities=24% Similarity=0.347 Sum_probs=56.2
Q ss_pred CEEEeecCccc-cCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964 1 MWLACVHFSLT-GQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~-g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~ 78 (175)
++|++++|.++ |.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|.. ..+++++.+++++
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence 35777777776 66777777777777777777777643 55667777777777777777665554 3366677777777
Q ss_pred ccCCCC
Q 039964 79 NELCGL 84 (175)
Q Consensus 79 N~l~~~ 84 (175)
|.+.+.
T Consensus 105 N~l~~~ 110 (168)
T 2ell_A 105 NKLKDI 110 (168)
T ss_dssp SSCCSS
T ss_pred CccCcc
Confidence 766654
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.25 E-value=1.4e-11 Score=104.18 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=59.8
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-ccc-CCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQL-QSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~-~~l~~l~~~~ 78 (175)
++|+|++|++++.+|..|..+++|+.|+|++|++++..|..+..+++|++|||++|++++.+|.. ..+ .+++.+++++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 46777778777777777777778888888888877766777777777888888888887777765 333 5677777777
Q ss_pred ccC
Q 039964 79 NEL 81 (175)
Q Consensus 79 N~l 81 (175)
|.+
T Consensus 577 Np~ 579 (635)
T 4g8a_A 577 NDF 579 (635)
T ss_dssp CCB
T ss_pred CCC
Confidence 743
No 30
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=8.4e-12 Score=87.73 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=68.8
Q ss_pred CEEEeecCccc-cCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964 1 MWLACVHFSLT-GQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~-g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~ 78 (175)
+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|.. ..+++++.+++++
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence 47899999998 78898888999999999999999855 66888899999999999998877765 4478889999998
Q ss_pred ccCCCC
Q 039964 79 NELCGL 84 (175)
Q Consensus 79 N~l~~~ 84 (175)
|.+.+.
T Consensus 98 N~i~~~ 103 (149)
T 2je0_A 98 NKIKDL 103 (149)
T ss_dssp SCCCSH
T ss_pred CcCCCh
Confidence 887764
No 31
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=4.3e-11 Score=88.58 Aligned_cols=86 Identities=23% Similarity=0.230 Sum_probs=72.3
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|++|++++|++++..+.. ..+++++.+++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence 47999999999655566789999999999999999665566789999999999999999877764 67888999999999
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.+.
T Consensus 135 ~l~~~~~ 141 (208)
T 2o6s_A 135 QLKSVPD 141 (208)
T ss_dssp CCSCCCT
T ss_pred ccceeCH
Confidence 8877654
No 32
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.5e-11 Score=97.73 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=74.8
Q ss_pred EEEeecC-ccccCCChhhcCCcccceeeccc-cccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964 2 WLACVHF-SLTGQITPKIGQLKSLDFLDLSR-NQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG 78 (175)
Q Consensus 2 ~L~Ls~N-~l~g~iP~~~~~l~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~ 78 (175)
.++++++ .|+ .||. ++.+++|+.|+|++ |.|++..|..|..+++|+.|+|++|+|++.+|.. ..+.+|+.|++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4688888 898 5999 99999999999996 9999877788999999999999999999998876 7789999999999
Q ss_pred ccCCCCCC
Q 039964 79 NELCGLPL 86 (175)
Q Consensus 79 N~l~~~p~ 86 (175)
|.|.+.|.
T Consensus 90 N~l~~~~~ 97 (347)
T 2ifg_A 90 NALESLSW 97 (347)
T ss_dssp SCCSCCCS
T ss_pred CccceeCH
Confidence 99988764
No 33
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=9.2e-12 Score=87.53 Aligned_cols=83 Identities=23% Similarity=0.346 Sum_probs=71.5
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCC--CCCcccCCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKI--PSGTQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~i--P~~~~~~~l~~l~~~~ 78 (175)
++|++++|.+++. ..++.+++|+.|++++|.+++.+|..+..+++|++|++++|++++.. +....+++++.+++++
T Consensus 45 ~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 45 EFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp CEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred cEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 4799999999865 77899999999999999999878988888999999999999999743 3347788999999999
Q ss_pred ccCCCCC
Q 039964 79 NELCGLP 85 (175)
Q Consensus 79 N~l~~~p 85 (175)
|.+.+.+
T Consensus 123 N~l~~~~ 129 (149)
T 2je0_A 123 CEVTNLN 129 (149)
T ss_dssp CGGGGST
T ss_pred CcccchH
Confidence 9887654
No 34
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=1.9e-11 Score=89.94 Aligned_cols=84 Identities=23% Similarity=0.305 Sum_probs=54.8
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+.+|....+++|+.+++++|.
T Consensus 91 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred CEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 35667777776666666667777777777777776666666677777777777777633344544556667777777766
Q ss_pred CCCC
Q 039964 81 LCGL 84 (175)
Q Consensus 81 l~~~ 84 (175)
+.+.
T Consensus 171 i~~~ 174 (197)
T 4ezg_A 171 VHDY 174 (197)
T ss_dssp CCCC
T ss_pred CcCh
Confidence 6543
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.23 E-value=3.5e-11 Score=95.47 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=57.7
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.++ .+|..++.+++|+.|+|++|.++ .+|..+..+++|++|++++|++.+.+|.. ..+++|+.+++++|
T Consensus 186 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp CEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred CEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence 46777777777 67777777777777777777777 35666777777777777777777777765 56667777777776
Q ss_pred cCC
Q 039964 80 ELC 82 (175)
Q Consensus 80 ~l~ 82 (175)
.+.
T Consensus 264 ~~~ 266 (328)
T 4fcg_A 264 SNL 266 (328)
T ss_dssp TTC
T ss_pred Cch
Confidence 443
No 36
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=1e-11 Score=88.95 Aligned_cols=84 Identities=25% Similarity=0.374 Sum_probs=73.7
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCC--CCCcccCCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKI--PSGTQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~i--P~~~~~~~l~~l~~~~ 78 (175)
++|+|++|.+++. ..+..+++|+.|+|++|.+++.+|..+..+++|++|++++|++++.. +....+++++.+++++
T Consensus 52 ~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~ 129 (168)
T 2ell_A 52 EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129 (168)
T ss_dssp CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence 5799999999965 78999999999999999999889988888999999999999999754 3446788999999999
Q ss_pred ccCCCCCC
Q 039964 79 NELCGLPL 86 (175)
Q Consensus 79 N~l~~~p~ 86 (175)
|.+.+.+.
T Consensus 130 N~l~~~~~ 137 (168)
T 2ell_A 130 CEVTNLND 137 (168)
T ss_dssp SGGGTSTT
T ss_pred CcCcchHH
Confidence 98887654
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.22 E-value=4.6e-11 Score=92.17 Aligned_cols=86 Identities=22% Similarity=0.237 Sum_probs=62.7
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++|++++|++++..|.. ..+++++.+++++|
T Consensus 88 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC
Confidence 46778888887666666777788888888888887666666777788888888888877666654 56677777777777
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.+.
T Consensus 168 ~l~~~~~ 174 (272)
T 3rfs_A 168 QLQSLPE 174 (272)
T ss_dssp CCCCCCT
T ss_pred CcCccCH
Confidence 7666543
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.22 E-value=2.3e-11 Score=96.47 Aligned_cols=83 Identities=18% Similarity=0.138 Sum_probs=75.4
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.++ .+|+.++.+++|+.|+|++|++.+.+|..+..+++|+.|++++|++.+.+|.. ..+++|+.+++++|
T Consensus 209 ~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 209 KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 57999999999 48888999999999999999999999999999999999999999999999976 77889999999999
Q ss_pred cCCCC
Q 039964 80 ELCGL 84 (175)
Q Consensus 80 ~l~~~ 84 (175)
.+.+.
T Consensus 288 ~~~~~ 292 (328)
T 4fcg_A 288 VNLSR 292 (328)
T ss_dssp TTCCC
T ss_pred Cchhh
Confidence 65543
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.21 E-value=6.2e-11 Score=91.41 Aligned_cols=82 Identities=27% Similarity=0.312 Sum_probs=47.4
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~ 80 (175)
+|+|++|.+++ + +.+..+++|+.|+|++|.+++..|..+..+++|++|++++|++++..|.. ..+++++.+++++|.
T Consensus 67 ~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 67 YLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144 (272)
T ss_dssp EEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc
Confidence 56666666654 2 34566666666666666666544444556666666666666666555543 445556666666665
Q ss_pred CCCCC
Q 039964 81 LCGLP 85 (175)
Q Consensus 81 l~~~p 85 (175)
+.+.+
T Consensus 145 l~~~~ 149 (272)
T 3rfs_A 145 LQSLP 149 (272)
T ss_dssp CCCCC
T ss_pred cCccC
Confidence 55443
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.20 E-value=6.4e-11 Score=92.46 Aligned_cols=85 Identities=27% Similarity=0.224 Sum_probs=60.7
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.++ .+|..+..+++|+.|+|++|++++..|..+..+++|++|++++|++++.++.. ..+++++.+++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 35777777776 67777777777777888877777555566777777777777777777665554 45667777777777
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.|.
T Consensus 159 ~l~~l~~ 165 (290)
T 1p9a_G 159 NLTELPA 165 (290)
T ss_dssp CCSCCCT
T ss_pred cCCccCH
Confidence 7766554
No 41
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=2.9e-11 Score=102.77 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=76.2
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCC-CCC-cccCCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKI-PSG-TQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~i-P~~-~~~~~l~~l~~~~ 78 (175)
+.|+|++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.+ |.. ..+++|+.+++++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 57999999999 899999999999999999999996 78 8999999999999999999986 665 7889999999999
Q ss_pred ccCCCCCC
Q 039964 79 NELCGLPL 86 (175)
Q Consensus 79 N~l~~~p~ 86 (175)
|.+++.|.
T Consensus 543 N~l~~~~~ 550 (567)
T 1dce_A 543 NSLCQEEG 550 (567)
T ss_dssp SGGGGSSS
T ss_pred CcCCCCcc
Confidence 99987654
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.19 E-value=7.9e-11 Score=91.93 Aligned_cols=86 Identities=22% Similarity=0.183 Sum_probs=74.6
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++.++.. ..+++++.+++++|
T Consensus 103 ~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence 57999999999766788999999999999999999766667889999999999999999766654 56889999999999
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+...|.
T Consensus 183 ~l~~ip~ 189 (290)
T 1p9a_G 183 SLYTIPK 189 (290)
T ss_dssp CCCCCCT
T ss_pred cCCccCh
Confidence 8886654
No 43
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=3.5e-11 Score=96.49 Aligned_cols=82 Identities=24% Similarity=0.161 Sum_probs=47.0
Q ss_pred EEEeecCccccCCChhhc-CCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 2 WLACVHFSLTGQITPKIG-QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
+|+|++|.+++..+..+. .+++|+.|+|++|++++..|..+..+++|++|+|++|++++..+.. ..+.+|+.+++++|
T Consensus 43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp EEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC
Confidence 566666666654444454 5666666666666666544455666666666666666665544432 44555555555555
Q ss_pred cCCC
Q 039964 80 ELCG 83 (175)
Q Consensus 80 ~l~~ 83 (175)
.+.+
T Consensus 123 ~i~~ 126 (361)
T 2xot_A 123 HIVV 126 (361)
T ss_dssp CCCE
T ss_pred cccE
Confidence 5443
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.18 E-value=4.4e-11 Score=97.95 Aligned_cols=83 Identities=24% Similarity=0.213 Sum_probs=41.2
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~ 80 (175)
+|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++|++++|++++..|.. ..+++++.+++++|.
T Consensus 303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 3445555554444444555555555555555554444444555555555555555555444433 344455555555554
Q ss_pred CCCC
Q 039964 81 LCGL 84 (175)
Q Consensus 81 l~~~ 84 (175)
+.+.
T Consensus 383 l~~~ 386 (455)
T 3v47_A 383 LKSV 386 (455)
T ss_dssp CSCC
T ss_pred cccC
Confidence 4443
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.17 E-value=6.9e-11 Score=96.80 Aligned_cols=83 Identities=22% Similarity=0.126 Sum_probs=75.6
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..+..+++|+.|||++|.+++..|..+..+++|++|++++|++++.++.. ..+++++.+++++|
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 57999999999888999999999999999999999888999999999999999999999876655 67889999999999
Q ss_pred cCCC
Q 039964 80 ELCG 83 (175)
Q Consensus 80 ~l~~ 83 (175)
.+.+
T Consensus 406 ~l~~ 409 (455)
T 3v47_A 406 PWDC 409 (455)
T ss_dssp CBCC
T ss_pred Cccc
Confidence 7654
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.17 E-value=3.4e-11 Score=94.61 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=64.3
Q ss_pred CEEEeecCccccCCChhh--cCCcccceeeccccccCccCchhhhCC-----CCCCEEeccCCcCCCCCCCC-cccCCCC
Q 039964 1 MWLACVHFSLTGQITPKI--GQLKSLDFLDLSRNQFFGGISSSLSRL-----SRLSVMDLSYNNLSGKIPSG-TQLQSFN 72 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~--~~l~~L~~L~Ls~N~l~g~iP~~~~~l-----~~L~~L~ls~N~l~g~iP~~-~~~~~l~ 72 (175)
++|+|++|.++|.+|..+ ..+++|+.|||++|.+++. |..+..+ ++|++|++++|++++..|.. ..+++++
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 468888888888888876 7888888888888888866 7777766 78888888888888777655 6677888
Q ss_pred eeeccCccCCC
Q 039964 73 ALTYAGNELCG 83 (175)
Q Consensus 73 ~l~~~~N~l~~ 83 (175)
.+++++|.+.+
T Consensus 177 ~L~Ls~N~l~~ 187 (312)
T 1wwl_A 177 TLDLSDNPELG 187 (312)
T ss_dssp EEECCSCTTCH
T ss_pred EEECCCCCcCc
Confidence 88888886543
No 47
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=3.5e-11 Score=105.02 Aligned_cols=77 Identities=27% Similarity=0.315 Sum_probs=37.6
Q ss_pred EEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCccC
Q 039964 3 LACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNEL 81 (175)
Q Consensus 3 L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~l 81 (175)
|+|++|.|+ .+|..++.|++|+.|||++|.|+ .+|..++.|++|++|+|++|.++ .+|.. ..+.+|..+++++|.+
T Consensus 252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence 444555554 44544555555555555555554 44555555555555555555544 23332 3444455555555544
Q ss_pred C
Q 039964 82 C 82 (175)
Q Consensus 82 ~ 82 (175)
.
T Consensus 329 ~ 329 (727)
T 4b8c_D 329 E 329 (727)
T ss_dssp C
T ss_pred C
Confidence 4
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.15 E-value=1.5e-10 Score=91.35 Aligned_cols=90 Identities=22% Similarity=0.259 Sum_probs=74.4
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|++++|.+++..|..+..+++|+.|+|++|.+++..+..+..+++|+.|++++|+++ .+|.. ..+++++.+++++|
T Consensus 195 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC
Confidence 46888889988877888999999999999999998777778888999999999999998 55543 67788899999999
Q ss_pred cCCCCCCCCCCC
Q 039964 80 ELCGLPLPNKCP 91 (175)
Q Consensus 80 ~l~~~p~~~~c~ 91 (175)
.+.+.+...-|.
T Consensus 274 ~i~~~~~~~f~~ 285 (330)
T 1xku_A 274 NISAIGSNDFCP 285 (330)
T ss_dssp CCCCCCTTSSSC
T ss_pred cCCccChhhcCC
Confidence 888877655553
No 49
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.14 E-value=7.6e-11 Score=94.55 Aligned_cols=86 Identities=21% Similarity=0.198 Sum_probs=74.2
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|..+++|+.|||++|+|++..+..+..+++|+.|+|++|++++..|.. ..+.+|+.+++++|
T Consensus 67 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 67 HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 47999999999777778999999999999999999766667899999999999999999877765 67788999999999
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.|.
T Consensus 147 ~l~~l~~ 153 (361)
T 2xot_A 147 QISRFPV 153 (361)
T ss_dssp CCCSCCG
T ss_pred cCCeeCH
Confidence 8887654
No 50
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.14 E-value=1.7e-11 Score=105.21 Aligned_cols=84 Identities=14% Similarity=0.223 Sum_probs=50.6
Q ss_pred CEEEeecCccccC-----------------CChhhc--CCcccceeeccccccCccCchhhhCCCCCCEEeccCCc-CCC
Q 039964 1 MWLACVHFSLTGQ-----------------ITPKIG--QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNN-LSG 60 (175)
Q Consensus 1 ~~L~Ls~N~l~g~-----------------iP~~~~--~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~-l~g 60 (175)
++|+|++|.++|. +|+.++ ++++|+.|+|++|.+.|.+|..++++++|++|++++|+ ++|
T Consensus 209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288 (636)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence 3566666666664 666666 66666666666666666666666666666666666665 665
Q ss_pred -CCCCC-ccc------CCCCeeeccCccCCCC
Q 039964 61 -KIPSG-TQL------QSFNALTYAGNELCGL 84 (175)
Q Consensus 61 -~iP~~-~~~------~~l~~l~~~~N~l~~~ 84 (175)
.+|.. ..+ ++++.+++++|.+...
T Consensus 289 ~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i 320 (636)
T 4eco_A 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320 (636)
T ss_dssp HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred ccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence 45543 222 4555555555544433
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.14 E-value=2.2e-10 Score=88.16 Aligned_cols=86 Identities=26% Similarity=0.244 Sum_probs=61.7
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..+..+..+++|+.|+|++|.+++..|..+..+++|++|++++|.+++..+.. ..+++|+.+++++|
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 46788888887555556677788888888888887666666777788888888888777655543 55677777777777
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.+.
T Consensus 168 ~l~~~~~ 174 (270)
T 2o6q_A 168 QLKRVPE 174 (270)
T ss_dssp CCSCCCT
T ss_pred cCcEeCh
Confidence 6665543
No 52
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=4.7e-11 Score=86.33 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=51.6
Q ss_pred EEEeecCccccCCChhhcCCc-ccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 2 WLACVHFSLTGQITPKIGQLK-SLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
+|++++|.++ .+|. +..+. +|+.|||++|.+++. ..+..+++|++|++++|++++.+|.. ..+++++.+++++|
T Consensus 23 ~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 23 ELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp EEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred EEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC
Confidence 5677777776 4554 33333 777777777777743 45667777777777777777554444 55667777777777
Q ss_pred cCCCCC
Q 039964 80 ELCGLP 85 (175)
Q Consensus 80 ~l~~~p 85 (175)
.+...|
T Consensus 99 ~i~~~~ 104 (176)
T 1a9n_A 99 SLVELG 104 (176)
T ss_dssp CCCCGG
T ss_pred cCCcch
Confidence 665433
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.12 E-value=9.4e-11 Score=96.50 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=71.7
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|.++++|+.|+|++|.+++..|..+..+++|++|+|++|++++..+.. ..+++|+.+++++|
T Consensus 78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 47899999999888888999999999999999999877788889999999999999998766664 56788888888888
Q ss_pred cCCCCC
Q 039964 80 ELCGLP 85 (175)
Q Consensus 80 ~l~~~p 85 (175)
.+.+.+
T Consensus 158 ~l~~~~ 163 (452)
T 3zyi_A 158 PIESIP 163 (452)
T ss_dssp CCCEEC
T ss_pred CcceeC
Confidence 776544
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.12 E-value=1.5e-10 Score=90.33 Aligned_cols=86 Identities=26% Similarity=0.247 Sum_probs=73.9
Q ss_pred CEEEeecCcccc-CCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964 1 MWLACVHFSLTG-QITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g-~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~ 78 (175)
++|+|++|.+++ .+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+.. ..+++++.+++++
T Consensus 153 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence 478999999987 58888999999999999999999877888999999999999999998766644 6678899999999
Q ss_pred ccCCCCCC
Q 039964 79 NELCGLPL 86 (175)
Q Consensus 79 N~l~~~p~ 86 (175)
|.+.+.+.
T Consensus 233 N~l~~~~~ 240 (306)
T 2z66_A 233 NHIMTSKK 240 (306)
T ss_dssp SCCCBCSS
T ss_pred CCCcccCH
Confidence 98876543
No 55
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.11 E-value=3.6e-10 Score=86.96 Aligned_cols=86 Identities=23% Similarity=0.196 Sum_probs=65.1
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.++...+..+..+++|+.|+|++|.+++..+..+..+++|++|++++|++++..|.. ..+++|+.+++++|
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 46888888887444444577888888888888888655556778888888888888888777665 56778888888888
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.+.
T Consensus 144 ~l~~~~~ 150 (270)
T 2o6q_A 144 ELQSLPK 150 (270)
T ss_dssp CCCCCCT
T ss_pred cCCccCH
Confidence 7776554
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.11 E-value=1.9e-10 Score=88.90 Aligned_cols=84 Identities=19% Similarity=0.144 Sum_probs=66.3
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+.. ..+++++.+++++|
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 46888888888777778888888888888888888655566788888888888888888666653 56778888888888
Q ss_pred cCCCC
Q 039964 80 ELCGL 84 (175)
Q Consensus 80 ~l~~~ 84 (175)
.+.+.
T Consensus 188 ~l~~~ 192 (285)
T 1ozn_A 188 RVAHV 192 (285)
T ss_dssp CCCEE
T ss_pred ccccc
Confidence 76654
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.10 E-value=3.3e-10 Score=87.58 Aligned_cols=81 Identities=23% Similarity=0.155 Sum_probs=36.4
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccc-cCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQ-FFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
+|+|++|.+++..|..+..+++|+.|++++|. ++...|..+..+++|++|++++|.+++..|.. ..+++++.+++++|
T Consensus 60 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence 34444444444444444444444444444443 33222344444444444444444444443332 33444444444444
Q ss_pred cCC
Q 039964 80 ELC 82 (175)
Q Consensus 80 ~l~ 82 (175)
.+.
T Consensus 140 ~l~ 142 (285)
T 1ozn_A 140 ALQ 142 (285)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.10 E-value=1.8e-10 Score=97.70 Aligned_cols=85 Identities=21% Similarity=0.185 Sum_probs=56.3
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|.++++|+.|||++|.+++..|..+.++++|++|++++|.+++..|.. ..+.+|+.+++++|
T Consensus 35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred CEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 35677777777666666777777777777777777655666677777777777777777665654 55666666666666
Q ss_pred cCCCCC
Q 039964 80 ELCGLP 85 (175)
Q Consensus 80 ~l~~~p 85 (175)
.+.+.+
T Consensus 115 ~l~~~~ 120 (606)
T 3vq2_A 115 KLASLE 120 (606)
T ss_dssp CCCCSS
T ss_pred cccccc
Confidence 555433
No 59
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.10 E-value=1.9e-10 Score=100.39 Aligned_cols=84 Identities=24% Similarity=0.315 Sum_probs=76.0
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
+.|+|++|.+. .+|..+..+++|+.|+|++|.|+ .+|..+..+++|++|+|++|.|+ .+|.. ..+.+|..|++++|
T Consensus 227 ~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 227 HALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp CEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSS
T ss_pred cEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCC
Confidence 47999999998 89999999999999999999999 99999999999999999999999 66765 78889999999999
Q ss_pred cCCCCCCC
Q 039964 80 ELCGLPLP 87 (175)
Q Consensus 80 ~l~~~p~~ 87 (175)
.+...|..
T Consensus 304 ~l~~lp~~ 311 (727)
T 4b8c_D 304 MVTTLPWE 311 (727)
T ss_dssp CCCCCCSS
T ss_pred CCCccChh
Confidence 88766643
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.10 E-value=1.3e-10 Score=96.77 Aligned_cols=81 Identities=23% Similarity=0.135 Sum_probs=62.2
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
++|+|++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|++||+++|+++ .+|.. .+.+++.+++++|.
T Consensus 24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-PTVNLKHLDLSFNA 101 (520)
T ss_dssp SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC-CCCCCSEEECCSSC
T ss_pred cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc-ccCCccEEeccCCc
Confidence 46788888888766677888888888888888888776777888888888888888887 45554 66777778887777
Q ss_pred CCC
Q 039964 81 LCG 83 (175)
Q Consensus 81 l~~ 83 (175)
+.+
T Consensus 102 l~~ 104 (520)
T 2z7x_B 102 FDA 104 (520)
T ss_dssp CSS
T ss_pred ccc
Confidence 665
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.09 E-value=1.1e-10 Score=97.73 Aligned_cols=83 Identities=23% Similarity=0.123 Sum_probs=55.5
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++||+++|++++.+|.. ..+++++.+++++|
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 35677777777666666777777777777777777666666667777777777777776666552 55666666666666
Q ss_pred cCCC
Q 039964 80 ELCG 83 (175)
Q Consensus 80 ~l~~ 83 (175)
.+.+
T Consensus 109 ~l~~ 112 (549)
T 2z81_A 109 PYQT 112 (549)
T ss_dssp CCSS
T ss_pred cccc
Confidence 5553
No 62
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.09 E-value=1.4e-10 Score=98.34 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=61.0
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|+++++|+.|||++|.+++..|..+.++++|++|++++|++++..|.. ..+++++.+++++|
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence 46778888887766777777888888888888777766777777777888888777777766654 55666777777776
Q ss_pred cCCC
Q 039964 80 ELCG 83 (175)
Q Consensus 80 ~l~~ 83 (175)
.+.+
T Consensus 116 ~i~~ 119 (606)
T 3t6q_A 116 GISS 119 (606)
T ss_dssp CCSC
T ss_pred Cccc
Confidence 6554
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.09 E-value=2.2e-10 Score=88.24 Aligned_cols=84 Identities=23% Similarity=0.155 Sum_probs=55.0
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|++++|.+++..+..+.++++|+.|++++|.+++..+..+..+++|++|++++|.+++..|.. ..+.+++.+++++|
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence 35677777777555556777777777777777777555556667777777777777776665543 45566666666666
Q ss_pred cCCCC
Q 039964 80 ELCGL 84 (175)
Q Consensus 80 ~l~~~ 84 (175)
.+.+.
T Consensus 111 ~l~~~ 115 (276)
T 2z62_A 111 NLASL 115 (276)
T ss_dssp CCCCS
T ss_pred Ccccc
Confidence 55543
No 64
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.08 E-value=2e-10 Score=96.89 Aligned_cols=83 Identities=25% Similarity=0.218 Sum_probs=65.5
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
++|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++||+++|+++ .+|.. .+.+|+.+++++|.
T Consensus 55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFND 132 (562)
T ss_dssp CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC-CCTTCSEEECCSSC
T ss_pred CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc-ccccCCEEECCCCC
Confidence 46888888888766678888888888888888888777778888888888888888887 45555 67778888888887
Q ss_pred CCCCC
Q 039964 81 LCGLP 85 (175)
Q Consensus 81 l~~~p 85 (175)
+.+.+
T Consensus 133 l~~l~ 137 (562)
T 3a79_B 133 FDVLP 137 (562)
T ss_dssp CSBCC
T ss_pred ccccC
Confidence 76543
No 65
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.08 E-value=2.3e-10 Score=84.15 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=68.8
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
++|+|++|.+++..|..+..+++|+.|++++|.+.+.+| .+..+++|+.|++++|++++ ++....+++++.+++++|.
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence 579999999998899999999999999999998444777 68999999999999999997 4455788999999999997
Q ss_pred CCC
Q 039964 81 LCG 83 (175)
Q Consensus 81 l~~ 83 (175)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 653
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.08 E-value=1.6e-10 Score=90.24 Aligned_cols=85 Identities=24% Similarity=0.341 Sum_probs=64.3
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCc-cCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFG-GISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~ 78 (175)
++|++++|.+++..|..+..+++|+.|++++|.+++ .+|..+..+++|++|++++|++++..|.. ..+++++.+++++
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 367777777777777777778888888888888876 46777778888888888888888776655 5667788888888
Q ss_pred ccCCCCC
Q 039964 79 NELCGLP 85 (175)
Q Consensus 79 N~l~~~p 85 (175)
|.+.+.+
T Consensus 209 N~l~~~~ 215 (306)
T 2z66_A 209 NNFFSLD 215 (306)
T ss_dssp SCCSBCC
T ss_pred CccCccC
Confidence 8776544
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.07 E-value=2.3e-10 Score=90.38 Aligned_cols=89 Identities=24% Similarity=0.252 Sum_probs=74.2
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|++++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|+.|++++|+++ .+|.. ..+++++.+++++|
T Consensus 196 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp SCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC
Confidence 35788899998777788999999999999999999877778899999999999999998 56654 77888999999999
Q ss_pred cCCCCCCCCCC
Q 039964 80 ELCGLPLPNKC 90 (175)
Q Consensus 80 ~l~~~p~~~~c 90 (175)
.+.+.+...-|
T Consensus 275 ~l~~~~~~~~~ 285 (332)
T 2ft3_A 275 NITKVGVNDFC 285 (332)
T ss_dssp CCCBCCTTSSS
T ss_pred CCCccChhHcc
Confidence 88877655443
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.07 E-value=2.6e-10 Score=93.82 Aligned_cols=80 Identities=21% Similarity=0.060 Sum_probs=64.6
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++.++.. ..+++++.+++++|
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 46788888888777888888888888888888888777778888888888888888888666654 56778888888888
Q ss_pred c
Q 039964 80 E 80 (175)
Q Consensus 80 ~ 80 (175)
.
T Consensus 301 p 301 (452)
T 3zyi_A 301 P 301 (452)
T ss_dssp C
T ss_pred C
Confidence 4
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.06 E-value=2.5e-10 Score=95.83 Aligned_cols=86 Identities=26% Similarity=0.365 Sum_probs=70.1
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccC-ccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFF-GGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~ 78 (175)
++|++++|.+.+.+|..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|++++.+|.. ..+++++.+++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 46888888888888888888888888888888887 578888888888888888888888877765 6677888888888
Q ss_pred ccCCCCCC
Q 039964 79 NELCGLPL 86 (175)
Q Consensus 79 N~l~~~p~ 86 (175)
|.+.+.+.
T Consensus 504 n~l~~~~~ 511 (570)
T 2z63_A 504 NQLKSVPD 511 (570)
T ss_dssp SCCSCCCT
T ss_pred CcCCCCCH
Confidence 87777654
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.06 E-value=3.8e-10 Score=96.08 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=45.3
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~ 80 (175)
+|+|++|.+++..|..|+.+++|+.|+|++|.+++..|..++.+++|++|+|++|.+++.++.. ..+++|..+++++|.
T Consensus 79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence 4555555555555555555555666666665555544445555555555555555555444433 345555555555554
Q ss_pred CCCC
Q 039964 81 LCGL 84 (175)
Q Consensus 81 l~~~ 84 (175)
+.+.
T Consensus 159 l~~~ 162 (597)
T 3oja_B 159 LERI 162 (597)
T ss_dssp CCBC
T ss_pred CCCC
Confidence 4443
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.06 E-value=4.2e-10 Score=95.84 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=72.9
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|+.+++|+.|+|++|.+++..+..++.+++|++|++++|.+++.+|.. ..+++|..+++++|
T Consensus 102 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 47999999999888888899999999999999999544445689999999999999999888865 67888999999999
Q ss_pred cCCCCC
Q 039964 80 ELCGLP 85 (175)
Q Consensus 80 ~l~~~p 85 (175)
.+.+.+
T Consensus 182 ~l~~~~ 187 (597)
T 3oja_B 182 RLTHVD 187 (597)
T ss_dssp CCSBCC
T ss_pred CCCCcC
Confidence 877653
No 72
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.06 E-value=2.9e-10 Score=93.90 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=65.1
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+.++++|++|+|++|++++..+.. ..+++|+.+++++|
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence 46888888888777778888888888888888888777788888888888888888888655543 56677777877777
Q ss_pred cCCCC
Q 039964 80 ELCGL 84 (175)
Q Consensus 80 ~l~~~ 84 (175)
.+.+.
T Consensus 115 ~i~~~ 119 (477)
T 2id5_A 115 KIVIL 119 (477)
T ss_dssp CCCEE
T ss_pred ccccC
Confidence 66543
No 73
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.06 E-value=3.4e-10 Score=95.91 Aligned_cols=83 Identities=20% Similarity=0.132 Sum_probs=62.5
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|.++++|+.|||++|.+++..|..++++++|++|++++|.+++..|.. ..+.+|+.+++++|
T Consensus 59 ~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS
T ss_pred cEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC
Confidence 46788888888766777888888888888888888766777888888888888888877666544 56667777777777
Q ss_pred cCCC
Q 039964 80 ELCG 83 (175)
Q Consensus 80 ~l~~ 83 (175)
.+.+
T Consensus 139 ~l~~ 142 (606)
T 3vq2_A 139 FIHS 142 (606)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6654
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.06 E-value=3.4e-10 Score=92.86 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=67.1
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..+..|.++++|+.|+|++|.+++..|..+..+++|++|+|++|++++..+.. ..+.+|+.+++++|
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 46888888888777788888888888888888888766678888888888888888888666643 56777888888888
Q ss_pred cCCCC
Q 039964 80 ELCGL 84 (175)
Q Consensus 80 ~l~~~ 84 (175)
.+.+.
T Consensus 147 ~i~~~ 151 (440)
T 3zyj_A 147 PIESI 151 (440)
T ss_dssp CCCEE
T ss_pred ccccc
Confidence 66544
No 75
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=5.4e-11 Score=105.67 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=39.9
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccc-cCc-cCchhhhCCC-------CCCEEeccCCcCCCCCCC--C-cccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQ-FFG-GISSSLSRLS-------RLSVMDLSYNNLSGKIPS--G-TQLQ 69 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~-l~g-~iP~~~~~l~-------~L~~L~ls~N~l~g~iP~--~-~~~~ 69 (175)
+|+|++|.+.|.+|..++++++|+.|+|++|+ ++| .+|..++.++ +|+.|++++|+++ .+|. . ..++
T Consensus 495 ~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp EEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred EEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence 34444444444444444444444444444444 444 4444433332 4445555555444 4444 2 4455
Q ss_pred CCCeeeccCccCCCCC
Q 039964 70 SFNALTYAGNELCGLP 85 (175)
Q Consensus 70 ~l~~l~~~~N~l~~~p 85 (175)
+|+.+++++|.+...|
T Consensus 574 ~L~~L~Ls~N~l~~lp 589 (876)
T 4ecn_A 574 KLGLLDCVHNKVRHLE 589 (876)
T ss_dssp TCCEEECTTSCCCBCC
T ss_pred CCCEEECCCCCcccch
Confidence 5666666666554333
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.05 E-value=2.9e-10 Score=93.28 Aligned_cols=81 Identities=19% Similarity=0.060 Sum_probs=66.3
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
+.|+|++|.+++..|..|..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+.. ..+.+++.+++++|
T Consensus 210 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 46788888888777888888888888888888888777778888888999999999888766665 56778888888888
Q ss_pred cC
Q 039964 80 EL 81 (175)
Q Consensus 80 ~l 81 (175)
.+
T Consensus 290 p~ 291 (440)
T 3zyj_A 290 PW 291 (440)
T ss_dssp CE
T ss_pred Cc
Confidence 43
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.05 E-value=2e-10 Score=91.44 Aligned_cols=83 Identities=29% Similarity=0.220 Sum_probs=44.7
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC-CcccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS-GTQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~-~~~~~~l~~l~~~~N~ 80 (175)
+|++++|.+++..+..+.++++|+.|+|++|.+++..|..+.++++|++|++++|++++..+. ...+++++.+++++|.
T Consensus 56 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 135 (353)
T 2z80_A 56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135 (353)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC
T ss_pred EEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC
Confidence 455666665543333555556666666666665554455555555566666665555543333 1344555555555555
Q ss_pred CCCC
Q 039964 81 LCGL 84 (175)
Q Consensus 81 l~~~ 84 (175)
+.+.
T Consensus 136 l~~l 139 (353)
T 2z80_A 136 YKTL 139 (353)
T ss_dssp CSSS
T ss_pred Cccc
Confidence 4443
No 78
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.05 E-value=3.5e-10 Score=95.81 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=70.6
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|..+++|+.|+|++|.+++..|..++.+++|++|++++|++++..|.. ..+++|+.+++++|
T Consensus 60 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n 139 (606)
T 3t6q_A 60 TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139 (606)
T ss_dssp SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS
T ss_pred eEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC
Confidence 47899999998888888999999999999999998888888889999999999999988764444 66778888888888
Q ss_pred cCCCC
Q 039964 80 ELCGL 84 (175)
Q Consensus 80 ~l~~~ 84 (175)
.+.+.
T Consensus 140 ~l~~~ 144 (606)
T 3t6q_A 140 HISSI 144 (606)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 77664
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.05 E-value=5e-10 Score=86.20 Aligned_cols=83 Identities=19% Similarity=0.087 Sum_probs=53.1
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..+..+..+++|+.|+|++|.+++..|..+..+++|++|++++|++++..+.. ..+++++.+++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134 (276)
T ss_dssp SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC
Confidence 35677777776555556677777777777777776655566666666777777666666555432 45556666666666
Q ss_pred cCCC
Q 039964 80 ELCG 83 (175)
Q Consensus 80 ~l~~ 83 (175)
.+.+
T Consensus 135 ~l~~ 138 (276)
T 2z62_A 135 LIQS 138 (276)
T ss_dssp CCCC
T ss_pred ccce
Confidence 5544
No 80
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.04 E-value=6.1e-10 Score=95.63 Aligned_cols=84 Identities=21% Similarity=0.186 Sum_probs=66.9
Q ss_pred CEEEeecCccccCCChhhc--CCcccceeeccccccCccCchhhhCCCCCCEEec------cCCcCCCCCCCC-cccCCC
Q 039964 1 MWLACVHFSLTGQITPKIG--QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDL------SYNNLSGKIPSG-TQLQSF 71 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~--~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~l------s~N~l~g~iP~~-~~~~~l 71 (175)
++|+|++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|.. ..+++|
T Consensus 491 ~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 491 TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 46888888888 6888876 88888888888888886 8888888888888888 457788888876 667888
Q ss_pred CeeeccCccCCCCCC
Q 039964 72 NALTYAGNELCGLPL 86 (175)
Q Consensus 72 ~~l~~~~N~l~~~p~ 86 (175)
+.+++++|.+...|.
T Consensus 569 ~~L~Ls~N~l~~ip~ 583 (636)
T 4eco_A 569 TQLQIGSNDIRKVNE 583 (636)
T ss_dssp CEEECCSSCCCBCCS
T ss_pred CEEECCCCcCCccCH
Confidence 888888887754443
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.04 E-value=2.6e-10 Score=86.10 Aligned_cols=86 Identities=17% Similarity=0.133 Sum_probs=62.6
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccc-cCccCchhhhCCCCCCEEeccC-CcCCCCCCCC-cccCCCCeeecc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQ-FFGGISSSLSRLSRLSVMDLSY-NNLSGKIPSG-TQLQSFNALTYA 77 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~L~ls~-N~l~g~iP~~-~~~~~l~~l~~~ 77 (175)
++|++++|.+++..+..+..+++|+.|++++|. +++..+..+..+++|++|++++ |++++..+.. ..+++++.++++
T Consensus 34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence 467888888886555578888888888888886 7644444677888888888887 8887655554 566777888888
Q ss_pred CccCCCCCC
Q 039964 78 GNELCGLPL 86 (175)
Q Consensus 78 ~N~l~~~p~ 86 (175)
+|.+.+.|.
T Consensus 114 ~n~l~~lp~ 122 (239)
T 2xwt_C 114 NTGLKMFPD 122 (239)
T ss_dssp EECCCSCCC
T ss_pred CCCCccccc
Confidence 777766553
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.04 E-value=2.4e-10 Score=89.61 Aligned_cols=83 Identities=25% Similarity=0.289 Sum_probs=64.3
Q ss_pred CEEEeecCccccCCCh----hhcCCcccceeeccccccCccCchhhhCC---CCCCEEeccCCcCCCCCCCCcccCCCCe
Q 039964 1 MWLACVHFSLTGQITP----KIGQLKSLDFLDLSRNQFFGGISSSLSRL---SRLSVMDLSYNNLSGKIPSGTQLQSFNA 73 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~----~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l---~~L~~L~ls~N~l~g~iP~~~~~~~l~~ 73 (175)
++|+|++|.++ .+|. .++.+++|+.|||++|.+++.+|..+..+ ++|++|++++|+++ .+|... .++++.
T Consensus 200 ~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~-~~~L~~ 276 (310)
T 4glp_A 200 QNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL-PAKLRV 276 (310)
T ss_dssp CSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC-CSCCSC
T ss_pred CEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh-cCCCCE
Confidence 35788999886 3443 24677899999999999988778777776 68999999999998 556543 368888
Q ss_pred eeccCccCCCCCC
Q 039964 74 LTYAGNELCGLPL 86 (175)
Q Consensus 74 l~~~~N~l~~~p~ 86 (175)
+++++|.+.+.|.
T Consensus 277 L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 277 LDLSSNRLNRAPQ 289 (310)
T ss_dssp EECCSCCCCSCCC
T ss_pred EECCCCcCCCCch
Confidence 9999998887654
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.04 E-value=1.2e-10 Score=97.06 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=49.4
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhh-CCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLS-RLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
.|+|++|.+++..|..++.+++|+.|||++|.+++.+|..+. .+++|+.|+|++|.+++..+ ...+++|..+++++|.
T Consensus 124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK 202 (487)
T ss_dssp EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCC
Confidence 566777777766666777777777777777777776666654 55666666666666554422 2234445555555554
Q ss_pred CCC
Q 039964 81 LCG 83 (175)
Q Consensus 81 l~~ 83 (175)
+.+
T Consensus 203 l~~ 205 (487)
T 3oja_A 203 LAF 205 (487)
T ss_dssp CCE
T ss_pred CCC
Confidence 443
No 84
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.04 E-value=3.2e-10 Score=95.20 Aligned_cols=84 Identities=23% Similarity=0.269 Sum_probs=59.6
Q ss_pred CEEEeecCccccCCC-hhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCC-CCCCCC-cccCCCCeeecc
Q 039964 1 MWLACVHFSLTGQIT-PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS-GKIPSG-TQLQSFNALTYA 77 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP-~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~-g~iP~~-~~~~~l~~l~~~ 77 (175)
+.|++++|.+.+..| ..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.++ +.+|.. ..+++++.++++
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 357777777776555 45677777777777777777777777777777777777777776 456654 566777777777
Q ss_pred CccCCCC
Q 039964 78 GNELCGL 84 (175)
Q Consensus 78 ~N~l~~~ 84 (175)
+|.+.+.
T Consensus 479 ~n~l~~~ 485 (570)
T 2z63_A 479 QCQLEQL 485 (570)
T ss_dssp TSCCCEE
T ss_pred CCccccC
Confidence 7766654
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.03 E-value=5.5e-10 Score=87.54 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=69.7
Q ss_pred CEEEeecCccccCCChhh--cCCcccceeeccccccCccCc----hhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCe
Q 039964 1 MWLACVHFSLTGQITPKI--GQLKSLDFLDLSRNQFFGGIS----SSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNA 73 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~--~~l~~L~~L~Ls~N~l~g~iP----~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~ 73 (175)
++|++++|.+++.+|..+ ..+++|+.|+|++|.+++..| ..+..+++|++|++++|.+++.+|.. ..+++++.
T Consensus 94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 173 (310)
T 4glp_A 94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTS 173 (310)
T ss_dssp CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCE
T ss_pred eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCE
Confidence 478999999999999888 889999999999999997665 34567889999999999998877765 67788999
Q ss_pred eeccCccCCC
Q 039964 74 LTYAGNELCG 83 (175)
Q Consensus 74 l~~~~N~l~~ 83 (175)
+++++|.+.+
T Consensus 174 L~Ls~N~l~~ 183 (310)
T 4glp_A 174 LDLSDNPGLG 183 (310)
T ss_dssp EECCSCTTCH
T ss_pred EECCCCCCcc
Confidence 9999997543
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.02 E-value=3.7e-10 Score=94.14 Aligned_cols=82 Identities=26% Similarity=0.291 Sum_probs=67.9
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCc--cCchhhhCCCCCCEEeccCCcCCCCCCCC--cccCCCCeeec
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFG--GISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNALTY 76 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~L~ls~N~l~g~iP~~--~~~~~l~~l~~ 76 (175)
++|++++|.+++.+|..+..+++|+.|++++|++++ .+|..+..+++|++|++++|++++.+|.. ..+++++.+++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 478999999998899999999999999999999986 66778899999999999999999866643 45567777777
Q ss_pred cCccCC
Q 039964 77 AGNELC 82 (175)
Q Consensus 77 ~~N~l~ 82 (175)
++|.+.
T Consensus 407 s~N~l~ 412 (520)
T 2z7x_B 407 SSNILT 412 (520)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 777654
No 87
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.02 E-value=8.4e-10 Score=88.91 Aligned_cols=82 Identities=16% Similarity=0.080 Sum_probs=42.3
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~ 80 (175)
+|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++|++++|.++..++.. ..+++++.+++++|.
T Consensus 73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 152 (390)
T 3o6n_A 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152 (390)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc
Confidence 4555555555444445555555555555555555444444555555555555555555333332 344455555555554
Q ss_pred CCC
Q 039964 81 LCG 83 (175)
Q Consensus 81 l~~ 83 (175)
+.+
T Consensus 153 l~~ 155 (390)
T 3o6n_A 153 LER 155 (390)
T ss_dssp CCB
T ss_pred cCc
Confidence 443
No 88
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=2.2e-10 Score=101.81 Aligned_cols=83 Identities=14% Similarity=0.226 Sum_probs=74.3
Q ss_pred CEEEeecCc-ccc-CCChhhcCCc-------ccceeeccccccCccCch--hhhCCCCCCEEeccCCcCCCCCCCCcccC
Q 039964 1 MWLACVHFS-LTG-QITPKIGQLK-------SLDFLDLSRNQFFGGISS--SLSRLSRLSVMDLSYNNLSGKIPSGTQLQ 69 (175)
Q Consensus 1 ~~L~Ls~N~-l~g-~iP~~~~~l~-------~L~~L~Ls~N~l~g~iP~--~~~~l~~L~~L~ls~N~l~g~iP~~~~~~ 69 (175)
++|+|++|. ++| .+|..++.++ +|+.|+|++|.++ .+|. .++++++|+.|+|++|+++ .+|....++
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~ 595 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNV 595 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTS
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCC
Confidence 579999998 998 8999888776 9999999999999 8998 8999999999999999999 888667888
Q ss_pred CCCeeeccCccCCCCC
Q 039964 70 SFNALTYAGNELCGLP 85 (175)
Q Consensus 70 ~l~~l~~~~N~l~~~p 85 (175)
+|+.+++++|.+...|
T Consensus 596 ~L~~L~Ls~N~l~~lp 611 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIP 611 (876)
T ss_dssp EESEEECCSSCCSCCC
T ss_pred cceEEECcCCccccch
Confidence 9999999999877555
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.01 E-value=1.8e-10 Score=90.54 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=30.3
Q ss_pred EEEeecCccccCCChhhcCC-----cccceeeccccccCccCchhhhCCCCCCEEeccCCcCCC
Q 039964 2 WLACVHFSLTGQITPKIGQL-----KSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSG 60 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l-----~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g 60 (175)
+|+|++|.+++. |..++.+ ++|+.|+|++|++++..|..++.+++|++|++++|++.|
T Consensus 125 ~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 125 ILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp EEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred EEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 455555555543 5444444 555555555555554444555555555555555555443
No 90
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.01 E-value=8.9e-10 Score=87.00 Aligned_cols=83 Identities=22% Similarity=0.214 Sum_probs=63.2
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
++|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++|++++|+++ .+|... .++++.+++++|.
T Consensus 57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~-~~~L~~L~l~~n~ 134 (332)
T 2ft3_A 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-PSSLVELRIHDNR 134 (332)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSC-CTTCCEEECCSSC
T ss_pred eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccc-cccCCEEECCCCc
Confidence 46888888888767778888899999999999998777888888888999998888887 444432 2566666666665
Q ss_pred CCCCC
Q 039964 81 LCGLP 85 (175)
Q Consensus 81 l~~~p 85 (175)
+.+.+
T Consensus 135 i~~~~ 139 (332)
T 2ft3_A 135 IRKVP 139 (332)
T ss_dssp CCCCC
T ss_pred cCccC
Confidence 55443
No 91
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.01 E-value=1.1e-09 Score=88.19 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=71.8
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchh-hhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSS-LSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~ 78 (175)
++|+|++|.+++..|..++.+++|+.|+|++|.++ .+|.. +..+++|++|++++|.+++..|.. ..+++++.+++++
T Consensus 96 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 96 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS
T ss_pred CEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC
Confidence 57999999999877888999999999999999999 56655 588999999999999999887764 6778899999999
Q ss_pred ccCCCC
Q 039964 79 NELCGL 84 (175)
Q Consensus 79 N~l~~~ 84 (175)
|.+.+.
T Consensus 175 n~l~~~ 180 (390)
T 3o6n_A 175 NRLTHV 180 (390)
T ss_dssp SCCSBC
T ss_pred CcCCcc
Confidence 977654
No 92
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.00 E-value=6.2e-10 Score=98.31 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=17.7
Q ss_pred hcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCC
Q 039964 18 IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSG 60 (175)
Q Consensus 18 ~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g 60 (175)
|.++++|+.|+|++|.+++..|..+.++++|++|+|++|.+++
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence 3334444444444444443334444444444444444444443
No 93
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.00 E-value=1.1e-09 Score=94.13 Aligned_cols=83 Identities=19% Similarity=0.139 Sum_probs=46.0
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC-CcccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS-GTQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~-~~~~~~l~~l~~~~N~ 80 (175)
+|+|++|.+++..|..|..+++|+.|||++|.+++..|..++++++|++|++++|++++..+. ...+.+|+.+++++|.
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence 456666666654444566666666666666666655555555566666666666655544332 2444555555555554
Q ss_pred CCCC
Q 039964 81 LCGL 84 (175)
Q Consensus 81 l~~~ 84 (175)
+.+.
T Consensus 109 l~~~ 112 (680)
T 1ziw_A 109 IQKI 112 (680)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 4443
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.99 E-value=1.1e-09 Score=94.15 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=75.4
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..++++++|+.|+|++|.+++..+..++.+++|++|++++|++++..|.. ..+.+|+.+++++|
T Consensus 52 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp SEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred cEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence 57999999999988999999999999999999999544446999999999999999999877765 77889999999999
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.+.
T Consensus 132 ~l~~~~~ 138 (680)
T 1ziw_A 132 GLSSTKL 138 (680)
T ss_dssp CCSCCCC
T ss_pred cccccCc
Confidence 8877543
No 95
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.99 E-value=6e-10 Score=91.99 Aligned_cols=82 Identities=20% Similarity=0.128 Sum_probs=55.5
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..|.++++|+.|+|++|.+++..+..+..+++|++|++++|++++.+|.. ..+.+|+.+++++|
T Consensus 59 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred CEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence 46777777777766777777777777777777777443344667777777777777777666544 45556666666666
Q ss_pred cCC
Q 039964 80 ELC 82 (175)
Q Consensus 80 ~l~ 82 (175)
.+.
T Consensus 139 ~l~ 141 (477)
T 2id5_A 139 DLV 141 (477)
T ss_dssp TCC
T ss_pred ccc
Confidence 544
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=2e-10 Score=95.73 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=63.3
Q ss_pred CEEEeecCccccCCChhhc-CCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIG-QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++.+|..+. .+++|+.|+|++|.+++. |. ...+++|+.|+|++|.+++.+|....+++|..+++++|
T Consensus 147 ~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC
Confidence 3688999999888888776 688888888888888854 33 34577888888888888876666666777788888888
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.|.
T Consensus 225 ~l~~lp~ 231 (487)
T 3oja_A 225 KLVLIEK 231 (487)
T ss_dssp CCCEECT
T ss_pred cCcccch
Confidence 7766543
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.98 E-value=8.4e-10 Score=93.08 Aligned_cols=82 Identities=23% Similarity=0.257 Sum_probs=65.6
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCc--cCchhhhCCCCCCEEeccCCcCCCCCCCC--cccCCCCeeec
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFG--GISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNALTY 76 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~L~ls~N~l~g~iP~~--~~~~~l~~l~~ 76 (175)
++|++++|.+++.+|..+..+++|+.|+|++|++++ .+|..+..+++|++|++++|++++.+|.. ..+.+++.+++
T Consensus 356 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence 478999999998899999999999999999999986 34567888999999999999998866653 44556666666
Q ss_pred cCccCC
Q 039964 77 AGNELC 82 (175)
Q Consensus 77 ~~N~l~ 82 (175)
++|.+.
T Consensus 436 ~~n~l~ 441 (562)
T 3a79_B 436 SSNMLT 441 (562)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 666554
No 98
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.98 E-value=1.4e-09 Score=85.65 Aligned_cols=81 Identities=22% Similarity=0.224 Sum_probs=64.6
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
++|+|++|.+++..+..+.++++|+.|+|++|.+++..|..+..+++|++|++++|+++ .+|.. .+++++.+++++|.
T Consensus 55 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~~~L~~L~l~~n~ 132 (330)
T 1xku_A 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK-MPKTLQELRVHENE 132 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS-CCTTCCEEECCSSC
T ss_pred eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChh-hcccccEEECCCCc
Confidence 47899999999766678999999999999999999777888999999999999999988 45543 22566777777765
Q ss_pred CCC
Q 039964 81 LCG 83 (175)
Q Consensus 81 l~~ 83 (175)
+.+
T Consensus 133 l~~ 135 (330)
T 1xku_A 133 ITK 135 (330)
T ss_dssp CCB
T ss_pred ccc
Confidence 544
No 99
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.98 E-value=1e-09 Score=91.88 Aligned_cols=80 Identities=25% Similarity=0.169 Sum_probs=67.6
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCC-CCC-CcccCCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGK-IPS-GTQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~-iP~-~~~~~~l~~l~~~~ 78 (175)
++|+|++|.+++..|..|..+++|+.|||++|.+++..|..++.+++|++|++++|.+++. +|. ...+++++.+++++
T Consensus 53 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 53 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132 (549)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred cEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC
Confidence 5799999999988888899999999999999999977777799999999999999999863 343 36777888888888
Q ss_pred cc
Q 039964 79 NE 80 (175)
Q Consensus 79 N~ 80 (175)
|.
T Consensus 133 n~ 134 (549)
T 2z81_A 133 VE 134 (549)
T ss_dssp SS
T ss_pred Cc
Confidence 85
No 100
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.96 E-value=4.7e-10 Score=81.01 Aligned_cols=82 Identities=16% Similarity=0.066 Sum_probs=67.7
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCC---CcccCCCCeeecc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPS---GTQLQSFNALTYA 77 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~---~~~~~~l~~l~~~ 77 (175)
++|+|++|.+++. +.+..+++|+.|+|++|.+++..|..+..+++|++|++++|+++. +|. ...+++++.++++
T Consensus 45 ~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 45 DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECC
T ss_pred CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEec
Confidence 4799999999964 678999999999999999995444445899999999999999964 443 3677889999999
Q ss_pred CccCCCCC
Q 039964 78 GNELCGLP 85 (175)
Q Consensus 78 ~N~l~~~p 85 (175)
+|.++..|
T Consensus 122 ~N~i~~~~ 129 (176)
T 1a9n_A 122 RNPVTNKK 129 (176)
T ss_dssp SSGGGGST
T ss_pred CCCCCCcH
Confidence 99877543
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.96 E-value=8.1e-10 Score=83.34 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=64.8
Q ss_pred CEEEeecCc-cccCCChhhcCCcccceeeccc-cccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCC---eee
Q 039964 1 MWLACVHFS-LTGQITPKIGQLKSLDFLDLSR-NQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFN---ALT 75 (175)
Q Consensus 1 ~~L~Ls~N~-l~g~iP~~~~~l~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~---~l~ 75 (175)
++|++++|. +++..+..|..+++|+.|++++ |.+++..+..+..+++|++|++++|++++ +|....+.+++ .++
T Consensus 58 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~ 136 (239)
T 2xwt_C 58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILE 136 (239)
T ss_dssp CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEE
T ss_pred cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccccccccccccccEEE
Confidence 478889886 7755555788888999999988 88886555678888889999999888886 56555666666 788
Q ss_pred ccCc-cCCCCCC
Q 039964 76 YAGN-ELCGLPL 86 (175)
Q Consensus 76 ~~~N-~l~~~p~ 86 (175)
+++| .+.+.+.
T Consensus 137 l~~N~~l~~i~~ 148 (239)
T 2xwt_C 137 ITDNPYMTSIPV 148 (239)
T ss_dssp EESCTTCCEECT
T ss_pred CCCCcchhhcCc
Confidence 8888 7765543
No 102
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.92 E-value=1.9e-09 Score=85.77 Aligned_cols=84 Identities=23% Similarity=0.144 Sum_probs=68.5
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCC-C-CcccCCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIP-S-GTQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP-~-~~~~~~l~~l~~~~ 78 (175)
++|+|++|.+++..|..+.++++|+.|||++|.+++..+..+..+++|++|++++|++++..+ . ...+++++.+++++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 79 QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred CEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCC
Confidence 579999999998778889999999999999999995444458899999999999999986544 2 36778889999988
Q ss_pred c-cCCCC
Q 039964 79 N-ELCGL 84 (175)
Q Consensus 79 N-~l~~~ 84 (175)
| .+.+.
T Consensus 159 n~~~~~~ 165 (353)
T 2z80_A 159 MDTFTKI 165 (353)
T ss_dssp SSSCCEE
T ss_pred Ccccccc
Confidence 8 45543
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.90 E-value=3.2e-09 Score=81.59 Aligned_cols=79 Identities=27% Similarity=0.341 Sum_probs=49.9
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
+|+|++|.+++ +| .+..+++|+.|||++|++++ +| .+..+++|+.|++++|++++. +....+++++.+++++|.+
T Consensus 110 ~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 110 RLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred EEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 56666666654 33 46666777777777777764 33 466677777777777777655 4445566677777777765
Q ss_pred CCCC
Q 039964 82 CGLP 85 (175)
Q Consensus 82 ~~~p 85 (175)
.+.|
T Consensus 185 ~~~~ 188 (263)
T 1xeu_A 185 VNEP 188 (263)
T ss_dssp ECCC
T ss_pred cCCc
Confidence 5443
No 104
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.89 E-value=2.8e-09 Score=84.34 Aligned_cols=80 Identities=25% Similarity=0.358 Sum_probs=52.4
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
++|++++|.+++ + +.+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++..|.. ..+++++.+++++|
T Consensus 246 ~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 246 TWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp CEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred CEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 356777777764 3 356677777777777777764 33 4666777777777777776666554 45666777777777
Q ss_pred cCCCC
Q 039964 80 ELCGL 84 (175)
Q Consensus 80 ~l~~~ 84 (175)
.+.+.
T Consensus 322 ~l~~~ 326 (347)
T 4fmz_A 322 HITDI 326 (347)
T ss_dssp SCCCC
T ss_pred ccccc
Confidence 66554
No 105
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.88 E-value=1.3e-09 Score=85.81 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=56.6
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhh-CCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLS-RLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
+|++++|.+++..|..+..+++|+.|||++|.+++..|..+. .+++|++|++++|.+++. |....+++++.+++++|.
T Consensus 124 ~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK 202 (317)
T ss_dssp EEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC
T ss_pred EEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCc
Confidence 567777777766666777778888888888888766666553 577777777777777654 333346667777777776
Q ss_pred CCCCC
Q 039964 81 LCGLP 85 (175)
Q Consensus 81 l~~~p 85 (175)
+.+.+
T Consensus 203 l~~l~ 207 (317)
T 3o53_A 203 LAFMG 207 (317)
T ss_dssp CCEEC
T ss_pred CCcch
Confidence 65543
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.87 E-value=7e-09 Score=79.72 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=48.0
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
++|++++|.++ .+| .+..+++|+.|+|++|++++ +|. +..+++|+.|++++|++++. |.... .+++.+++++|.
T Consensus 44 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l-~~~~~-~~L~~L~L~~N~ 117 (263)
T 1xeu_A 44 QNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNL-NGIPS-ACLSRLFLDNNE 117 (263)
T ss_dssp SEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCC-TTCCC-SSCCEEECCSSC
T ss_pred cEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCc-Ccccc-CcccEEEccCCc
Confidence 35777777776 455 56777777777777777774 343 67777777777777777653 22222 445555555554
Q ss_pred CCC
Q 039964 81 LCG 83 (175)
Q Consensus 81 l~~ 83 (175)
+.+
T Consensus 118 l~~ 120 (263)
T 1xeu_A 118 LRD 120 (263)
T ss_dssp CSB
T ss_pred cCC
Confidence 443
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.86 E-value=3.9e-09 Score=90.38 Aligned_cols=79 Identities=25% Similarity=0.268 Sum_probs=46.3
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
.|+|++|.+++. +.+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++. |....+++|..+++++|.+
T Consensus 135 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 135 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEE
T ss_pred EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcC
Confidence 455555555532 445566666666666666664433 56666666666666666643 4445566666777777665
Q ss_pred CCCC
Q 039964 82 CGLP 85 (175)
Q Consensus 82 ~~~p 85 (175)
.+.|
T Consensus 210 ~~~p 213 (605)
T 1m9s_A 210 LNKP 213 (605)
T ss_dssp ECCC
T ss_pred cCCc
Confidence 5543
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.85 E-value=7.1e-09 Score=80.76 Aligned_cols=61 Identities=28% Similarity=0.392 Sum_probs=23.9
Q ss_pred hcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 18 IGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 18 ~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| ...+++++.+++++|.+
T Consensus 130 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence 33333444444444444321 223344444444444444443332 23333444444444433
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.85 E-value=7e-09 Score=88.25 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=6.8
Q ss_pred CCCCeeeccCccCCC
Q 039964 69 QSFNALTYAGNELCG 83 (175)
Q Consensus 69 ~~l~~l~~~~N~l~~ 83 (175)
.+|+.+++++|.+..
T Consensus 180 ~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 180 ESLEALDVSTNLLES 194 (571)
T ss_dssp TTCCEEECCSSCCSS
T ss_pred CCCCEEECcCCCCCc
Confidence 344444444444443
No 110
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.84 E-value=7.3e-11 Score=86.89 Aligned_cols=78 Identities=28% Similarity=0.368 Sum_probs=44.2
Q ss_pred EEeecCccccCCCh------hhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeee
Q 039964 3 LACVHFSLTGQITP------KIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALT 75 (175)
Q Consensus 3 L~Ls~N~l~g~iP~------~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~ 75 (175)
++++.|.++|.+|. .+..+++|+.|+|++|.+++ +| .+..+++|+.|++++|.++ .+|.. ..+++++.++
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW 99 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEE
T ss_pred cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEE
Confidence 34555556655555 56666666666666666664 55 5566666666666666665 33432 2334555555
Q ss_pred ccCccCCC
Q 039964 76 YAGNELCG 83 (175)
Q Consensus 76 ~~~N~l~~ 83 (175)
+++|.+.+
T Consensus 100 L~~N~l~~ 107 (198)
T 1ds9_A 100 ISYNQIAS 107 (198)
T ss_dssp EEEEECCC
T ss_pred CcCCcCCc
Confidence 55555444
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.82 E-value=8.4e-09 Score=88.31 Aligned_cols=80 Identities=26% Similarity=0.341 Sum_probs=57.1
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
++|+|++|.+++ + +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++.+| ...+++|+.|++++|.
T Consensus 112 ~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 112 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp CEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence 356677777664 3 3466777777777777777743 457778888888888888887766 5667788888888887
Q ss_pred CCCCC
Q 039964 81 LCGLP 85 (175)
Q Consensus 81 l~~~p 85 (175)
+.+.+
T Consensus 187 i~~l~ 191 (605)
T 1m9s_A 187 ISDLR 191 (605)
T ss_dssp CCBCG
T ss_pred CCCCh
Confidence 76653
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.82 E-value=5.8e-09 Score=81.25 Aligned_cols=81 Identities=25% Similarity=0.285 Sum_probs=69.4
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
++|++++|.+++. +.+..+++|+.|++++|.+++..| +..+++|+.|++++|.+++ +|....+++|+.+++++|.
T Consensus 137 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEE
T ss_pred CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCc
Confidence 4799999999864 679999999999999999996544 8999999999999999986 4556778899999999998
Q ss_pred CCCCCC
Q 039964 81 LCGLPL 86 (175)
Q Consensus 81 l~~~p~ 86 (175)
+...|.
T Consensus 212 i~~~~~ 217 (291)
T 1h6t_A 212 CLNKPI 217 (291)
T ss_dssp EECCCE
T ss_pred ccCCcc
Confidence 776543
No 113
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.81 E-value=1e-08 Score=80.42 Aligned_cols=54 Identities=30% Similarity=0.413 Sum_probs=23.8
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS 59 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~ 59 (175)
+|+|++|.+++ +| .+..+++|+.|++++|.+++ +|. +..+++|++|++++|+++
T Consensus 89 ~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 89 ELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp EEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred EEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccC
Confidence 44555555442 22 34444444444444444442 222 444444444444444444
No 114
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.80 E-value=1e-08 Score=80.39 Aligned_cols=54 Identities=30% Similarity=0.407 Sum_probs=22.5
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS 59 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~ 59 (175)
+|+|++|.+++ +|. +..+++|+.|++++|.+++ +|. +..+++|+.|++++|+++
T Consensus 111 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 111 TLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp EEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC
Confidence 34444444442 222 4444444444444444442 221 334444444444444444
No 115
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.79 E-value=6.7e-09 Score=81.61 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=67.7
Q ss_pred CEEEeecCccccCCChhhc-CCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964 1 MWLACVHFSLTGQITPKIG-QLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN 79 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N 79 (175)
++|+|++|.+++..|..+. .+++|+.|+|++|.+++ +|. ...+++|++|++++|++++.+|....+++++.+++++|
T Consensus 147 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred CEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC
Confidence 3689999999987777764 78999999999999985 443 34588999999999999977666677788999999999
Q ss_pred cCCCCCC
Q 039964 80 ELCGLPL 86 (175)
Q Consensus 80 ~l~~~p~ 86 (175)
.+.+.|.
T Consensus 225 ~l~~l~~ 231 (317)
T 3o53_A 225 KLVLIEK 231 (317)
T ss_dssp CCCEECT
T ss_pred cccchhh
Confidence 8776543
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.79 E-value=1.4e-08 Score=86.39 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=41.2
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
+|+|++|.+++ +|. +.. +|+.|+|++|.+++ +|. .+++|+.|++++|++++ +|. .+++|+.+++++|.+
T Consensus 104 ~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 104 YLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQL 172 (571)
T ss_dssp EEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCC
T ss_pred EEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCC
Confidence 45555555553 444 333 55555555555554 444 45566666666666665 443 345666677777766
Q ss_pred CCCCC
Q 039964 82 CGLPL 86 (175)
Q Consensus 82 ~~~p~ 86 (175)
.+.|.
T Consensus 173 ~~lp~ 177 (571)
T 3cvr_A 173 TFLPE 177 (571)
T ss_dssp SCCCC
T ss_pred CCcch
Confidence 66443
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.78 E-value=1.5e-08 Score=83.75 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=41.6
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
+|++++|.+++ +| +++.+++|+.|++++|++++ +|.. ..+|++|++++|++++ +|....+++++.+++++|.+
T Consensus 135 ~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 135 YLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCC
T ss_pred EEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-CccccCCCCCCEEECCCCcC
Confidence 55666666664 55 36666666666666666663 4432 2355555555555554 34444455555555555555
Q ss_pred CC
Q 039964 82 CG 83 (175)
Q Consensus 82 ~~ 83 (175)
.+
T Consensus 208 ~~ 209 (454)
T 1jl5_A 208 KK 209 (454)
T ss_dssp SS
T ss_pred Cc
Confidence 44
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.76 E-value=1.1e-08 Score=84.43 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=40.3
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
+|+|++|.+++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++.+| ...+++++.+++++|.+
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence 34444444443322 34444555555555555432 235555555555666665555555 34455566666666655
Q ss_pred CCCC
Q 039964 82 CGLP 85 (175)
Q Consensus 82 ~~~p 85 (175)
.+.|
T Consensus 388 ~~~p 391 (466)
T 1o6v_A 388 TNAP 391 (466)
T ss_dssp ECCC
T ss_pred cCCc
Confidence 5544
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.76 E-value=2.4e-10 Score=84.07 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=70.6
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
++|+|++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +|....+++++.+++++|.
T Consensus 51 ~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 51 KHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp SEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEE
T ss_pred CEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCc
Confidence 579999999996 88 8999999999999999999 789888888999999999999997 4555667889999999998
Q ss_pred CCCC
Q 039964 81 LCGL 84 (175)
Q Consensus 81 l~~~ 84 (175)
+.+.
T Consensus 127 i~~~ 130 (198)
T 1ds9_A 127 ITNW 130 (198)
T ss_dssp CCCH
T ss_pred CCch
Confidence 7754
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.76 E-value=1.4e-08 Score=80.95 Aligned_cols=85 Identities=22% Similarity=0.221 Sum_probs=61.7
Q ss_pred CEEEeecCccccCCC-hhhcCCcccceeeccccccCccCch-hhhCCCCCCE-EeccCCcCCCCCCCC-cccCCCCeeec
Q 039964 1 MWLACVHFSLTGQIT-PKIGQLKSLDFLDLSRNQFFGGISS-SLSRLSRLSV-MDLSYNNLSGKIPSG-TQLQSFNALTY 76 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP-~~~~~l~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~-L~ls~N~l~g~iP~~-~~~~~l~~l~~ 76 (175)
++|+|++|+++ .|| ..|.++++|+.|||++|.+.+.+|. .+.+++++.. +++++|+++...|.. ..+++|+.+++
T Consensus 33 ~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 33 IELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp SEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred CEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence 46888888887 455 4578888888888888887766664 4567777664 556667887766665 56778888888
Q ss_pred cCccCCCCCC
Q 039964 77 AGNELCGLPL 86 (175)
Q Consensus 77 ~~N~l~~~p~ 86 (175)
++|.+.+.+.
T Consensus 112 ~~n~l~~~~~ 121 (350)
T 4ay9_X 112 SNTGIKHLPD 121 (350)
T ss_dssp EEECCSSCCC
T ss_pred cccccccCCc
Confidence 8887776554
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.73 E-value=3.5e-08 Score=81.60 Aligned_cols=76 Identities=26% Similarity=0.288 Sum_probs=49.0
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
+|++++|.+++ +| +..+++|+.|++++|.+++. .++.+++|+.|++++|++++ +| ...+++++.+++++|.+
T Consensus 174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCC
T ss_pred EEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcC
Confidence 56666666664 44 56666666666666666643 25666777777777777776 44 44556677777777766
Q ss_pred CCCC
Q 039964 82 CGLP 85 (175)
Q Consensus 82 ~~~p 85 (175)
.+.+
T Consensus 246 ~~~~ 249 (457)
T 3bz5_A 246 TELD 249 (457)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 6654
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.73 E-value=1.4e-09 Score=90.00 Aligned_cols=59 Identities=10% Similarity=-0.010 Sum_probs=30.0
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCC-------------CEEeccCCcCCC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRL-------------SVMDLSYNNLSG 60 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L-------------~~L~ls~N~l~g 60 (175)
++|++++|.+ |.+|++++++++|+.|++++|.++|.+|..++++++| ++|++++|.+++
T Consensus 14 ~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 14 QEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred hhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 4688999999 7999999999999999999999999999988776543 555555555554
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.71 E-value=2.9e-08 Score=81.83 Aligned_cols=76 Identities=26% Similarity=0.374 Sum_probs=33.5
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCccC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNEL 81 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~l 81 (175)
.|++++|.+++ +|. +..+++|+.|++++|.+++..| +..+++|+.|++++|++++..| ...+++++.+++++|.+
T Consensus 269 ~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 269 ELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp EEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCC
T ss_pred EEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCcc
Confidence 34444444443 222 4444444444444444443222 4444555555555555554443 22334444444444443
Q ss_pred C
Q 039964 82 C 82 (175)
Q Consensus 82 ~ 82 (175)
.
T Consensus 344 ~ 344 (466)
T 1o6v_A 344 S 344 (466)
T ss_dssp C
T ss_pred C
Confidence 3
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.71 E-value=4.5e-08 Score=80.95 Aligned_cols=77 Identities=27% Similarity=0.305 Sum_probs=45.6
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
++|++++|.+++ +| .+..+++|+.|+|++|++++ +| ++.+++|++|++++|++++. | ...+++++.+++++|.
T Consensus 45 ~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 45 TSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp CEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSSC
T ss_pred CEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCCc
Confidence 356777777764 44 46666666666766666664 33 55666666666666666653 2 3344555555555555
Q ss_pred CCCC
Q 039964 81 LCGL 84 (175)
Q Consensus 81 l~~~ 84 (175)
+.+.
T Consensus 118 l~~l 121 (457)
T 3bz5_A 118 LTKL 121 (457)
T ss_dssp CSCC
T ss_pred CCee
Confidence 5443
No 125
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.69 E-value=3e-09 Score=82.36 Aligned_cols=64 Identities=27% Similarity=0.459 Sum_probs=50.7
Q ss_pred cCCcccceeeccccccCc--cCchhhhCCCCCCEEeccCCcCCCCCCCCcccC--CCCeeeccCccCCC
Q 039964 19 GQLKSLDFLDLSRNQFFG--GISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQ--SFNALTYAGNELCG 83 (175)
Q Consensus 19 ~~l~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~--~l~~l~~~~N~l~~ 83 (175)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. .+...+. +|..+++.+|.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCcc
Confidence 457889999999999987 5567778899999999999999875 2223334 78889999998875
No 126
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.66 E-value=1.6e-08 Score=78.24 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=58.7
Q ss_pred CEEEeecCcccc--CCChhhcCCcccceeeccccccCccCchhhhCCC--CCCEEeccCCcCCCCCCCC--------ccc
Q 039964 1 MWLACVHFSLTG--QITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLS--RLSVMDLSYNNLSGKIPSG--------TQL 68 (175)
Q Consensus 1 ~~L~Ls~N~l~g--~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~--~L~~L~ls~N~l~g~iP~~--------~~~ 68 (175)
+.|+||+|.+++ .+|..+..+++|+.|||++|++++. ..+..+. .|++|+|++|.+++.+|.. ..+
T Consensus 173 ~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~ 250 (267)
T 3rw6_A 173 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERF 250 (267)
T ss_dssp CEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHC
T ss_pred CEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHC
Confidence 579999999998 6778888999999999999999964 3345555 9999999999999988742 245
Q ss_pred CCCCeee
Q 039964 69 QSFNALT 75 (175)
Q Consensus 69 ~~l~~l~ 75 (175)
++|..++
T Consensus 251 P~L~~LD 257 (267)
T 3rw6_A 251 PKLLRLD 257 (267)
T ss_dssp TTCCEES
T ss_pred cccCeEC
Confidence 5666554
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.65 E-value=3.8e-09 Score=85.01 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=57.1
Q ss_pred CEEEeecCccc----cCCChhhcCCcccceeeccccccCcc----CchhhhC--CCCCCEEeccCCcCCC----CCCCC-
Q 039964 1 MWLACVHFSLT----GQITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSR--LSRLSVMDLSYNNLSG----KIPSG- 65 (175)
Q Consensus 1 ~~L~Ls~N~l~----g~iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~--l~~L~~L~ls~N~l~g----~iP~~- 65 (175)
++|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+.. +++|+.|+|++|.+++ .+|..
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 35777777775 55677777777777777777777754 4555533 7777777777777776 35543
Q ss_pred -cccCCCCeeeccCccCCCC
Q 039964 66 -TQLQSFNALTYAGNELCGL 84 (175)
Q Consensus 66 -~~~~~l~~l~~~~N~l~~~ 84 (175)
..++++..+++++|.+.+.
T Consensus 299 ~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHCTTCCEEECTTSBSCTT
T ss_pred HhcCCCceEEEccCCcCCcc
Confidence 2357777788877776654
No 128
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.64 E-value=3.3e-08 Score=78.13 Aligned_cols=79 Identities=23% Similarity=0.374 Sum_probs=62.6
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCcc
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGNE 80 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N~ 80 (175)
++|++++|.+++ +|. +..+++|+.|++++|.+++ + +.+..+++|+.|++++|++++. |....+++++.+++++|.
T Consensus 224 ~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 224 NSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC
T ss_pred CEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCc
Confidence 468889998884 444 8888999999999998884 4 4578888999999999988864 555677888889998887
Q ss_pred CCCC
Q 039964 81 LCGL 84 (175)
Q Consensus 81 l~~~ 84 (175)
+.+.
T Consensus 299 l~~~ 302 (347)
T 4fmz_A 299 LGNE 302 (347)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 6543
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.62 E-value=1.2e-08 Score=81.67 Aligned_cols=81 Identities=22% Similarity=0.156 Sum_probs=39.0
Q ss_pred EEEeecCccccCCC----hhhcCCc-ccceeeccccccCccCchhhhCC-----CCCCEEeccCCcCCCCCCCC-----c
Q 039964 2 WLACVHFSLTGQIT----PKIGQLK-SLDFLDLSRNQFFGGISSSLSRL-----SRLSVMDLSYNNLSGKIPSG-----T 66 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP----~~~~~l~-~L~~L~Ls~N~l~g~iP~~~~~l-----~~L~~L~ls~N~l~g~iP~~-----~ 66 (175)
+|+|++|.+++..+ ..+..++ +|+.|+|++|.+++..+..+..+ ++|++|++++|.+++..+.. .
T Consensus 26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 105 (362)
T 3goz_A 26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA 105 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHH
Confidence 45555555554333 4444455 55555555555554444444443 55555555555555443331 1
Q ss_pred cc-CCCCeeeccCccCC
Q 039964 67 QL-QSFNALTYAGNELC 82 (175)
Q Consensus 67 ~~-~~l~~l~~~~N~l~ 82 (175)
.. .+++.+++++|.+.
T Consensus 106 ~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 106 AIPFTITVLDLGWNDFS 122 (362)
T ss_dssp TSCTTCCEEECCSSCGG
T ss_pred hCCCCccEEECcCCcCC
Confidence 11 34555555555443
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.61 E-value=5.6e-09 Score=82.11 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=32.2
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCcc-CchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGG-ISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGN 79 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N 79 (175)
.|++++|.+.+..|. +..+++|+.|+|++|.+++. +|..+..+++|++|++++|.+++..|.. ..+++|+.+++++|
T Consensus 74 ~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 74 AFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp EEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred EEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 344444444433332 33344444444444444433 4444444444444444444444333322 22334444444444
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.56 E-value=2e-08 Score=80.24 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=70.8
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCc----hhhhCCC-CCCEEeccCCcCCCCCCCC-ccc-----CC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGIS----SSLSRLS-RLSVMDLSYNNLSGKIPSG-TQL-----QS 70 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP----~~~~~l~-~L~~L~ls~N~l~g~iP~~-~~~-----~~ 70 (175)
++++++|.++|.+|..+....+|+.|||++|.+++..+ ..+..++ +|++|+|++|.+++..+.. ..+ .+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 67899999999999988888889999999999997666 6788898 8999999999999776654 232 78
Q ss_pred CCeeeccCccCCCC
Q 039964 71 FNALTYAGNELCGL 84 (175)
Q Consensus 71 l~~l~~~~N~l~~~ 84 (175)
++.+++++|.+.+.
T Consensus 82 L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 82 VTSLNLSGNFLSYK 95 (362)
T ss_dssp CCEEECCSSCGGGS
T ss_pred ccEEECcCCcCChH
Confidence 99999999987654
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.55 E-value=1e-07 Score=81.88 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=47.2
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCcc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNE 80 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~ 80 (175)
.|+|++|.+++ +| ..+++|+.|+|++|.|+ .+|. .+++|+.|+|++|+++ .+|.. ..++++..+++++|.
T Consensus 225 ~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 225 ELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred EEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 46666666663 55 34466667777777776 4555 5566777777777777 44543 566777777777776
Q ss_pred CCC
Q 039964 81 LCG 83 (175)
Q Consensus 81 l~~ 83 (175)
+.+
T Consensus 296 l~~ 298 (622)
T 3g06_A 296 LSE 298 (622)
T ss_dssp CCH
T ss_pred CCC
Confidence 654
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.52 E-value=2.7e-08 Score=78.17 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=72.0
Q ss_pred CEEEeecCccccC-CChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCC-cCCCC-CCCC-cccCCCCeeec
Q 039964 1 MWLACVHFSLTGQ-ITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYN-NLSGK-IPSG-TQLQSFNALTY 76 (175)
Q Consensus 1 ~~L~Ls~N~l~g~-iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N-~l~g~-iP~~-~~~~~l~~l~~ 76 (175)
++|+|++|.+++. +|..+..+++|+.|+|++|.+++..|..++.+++|++|++++| .+++. +|.. ..+++|+.+++
T Consensus 96 ~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l 175 (336)
T 2ast_B 96 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175 (336)
T ss_dssp CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence 5799999999876 8889999999999999999999889999999999999999999 67753 4543 56788999999
Q ss_pred cCc-cCCC
Q 039964 77 AGN-ELCG 83 (175)
Q Consensus 77 ~~N-~l~~ 83 (175)
++| .+.+
T Consensus 176 ~~~~~l~~ 183 (336)
T 2ast_B 176 SWCFDFTE 183 (336)
T ss_dssp CCCTTCCH
T ss_pred CCCCCcCh
Confidence 999 7763
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.50 E-value=3.2e-07 Score=78.80 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=6.8
Q ss_pred CCCCeeeccCccCCC
Q 039964 69 QSFNALTYAGNELCG 83 (175)
Q Consensus 69 ~~l~~l~~~~N~l~~ 83 (175)
++|+.+++++|.+.+
T Consensus 141 ~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 141 PGLQELSVSDNQLAS 155 (622)
T ss_dssp TTCCEEECCSSCCSC
T ss_pred CCCCEEECcCCcCCC
Confidence 344444444444443
No 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.46 E-value=4.7e-08 Score=78.60 Aligned_cols=41 Identities=27% Similarity=0.216 Sum_probs=22.0
Q ss_pred cCCcccceeeccccccCc----cCchhhhCCCCCCEEeccCCcCC
Q 039964 19 GQLKSLDFLDLSRNQFFG----GISSSLSRLSRLSVMDLSYNNLS 59 (175)
Q Consensus 19 ~~l~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~L~ls~N~l~ 59 (175)
..+++|+.|+|++|.+++ .+|..+..+++|++|+|++|.++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 345555555555555554 24445555555555555555554
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.36 E-value=5.7e-07 Score=71.50 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=50.9
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccc-cccCccCch-hhhCCCCCCEEeccCCcCCCCCCCCcccCCCCeeeccCc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSR-NQFFGGISS-SLSRLSRLSVMDLSYNNLSGKIPSGTQLQSFNALTYAGN 79 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~-N~l~g~iP~-~~~~l~~L~~L~ls~N~l~g~iP~~~~~~~l~~l~~~~N 79 (175)
.|+|++|.++ .||.......+|+.|++++ |.++ .+|. .+..+++|+.||+++|+++..++. .+.++..+...++
T Consensus 158 ~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 158 ILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST 233 (350)
T ss_dssp EEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC
T ss_pred hhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC
Confidence 5777888887 5666666667778888775 4444 6664 467778888888888888744332 3455555555444
Q ss_pred -cCCCCC
Q 039964 80 -ELCGLP 85 (175)
Q Consensus 80 -~l~~~p 85 (175)
.+...|
T Consensus 234 ~~l~~lP 240 (350)
T 4ay9_X 234 YNLKKLP 240 (350)
T ss_dssp TTCCCCC
T ss_pred CCcCcCC
Confidence 444433
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.30 E-value=7.3e-08 Score=78.80 Aligned_cols=82 Identities=17% Similarity=0.058 Sum_probs=43.6
Q ss_pred CEEEeecCccccCCChhhcCC-----cccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCCCCCCCC-c----
Q 039964 1 MWLACVHFSLTGQITPKIGQL-----KSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLSGKIPSG-T---- 66 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l-----~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~---- 66 (175)
++|+|++|.+++..+..+... ++|+.|++++|.+++. +|..+..+++|++|++++|.+++..+.. .
T Consensus 287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 366 (461)
T 1z7x_W 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 366 (461)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc
Confidence 356666666654433333322 4666666666666644 4455555666666666666655433221 0
Q ss_pred -ccCCCCeeeccCccCC
Q 039964 67 -QLQSFNALTYAGNELC 82 (175)
Q Consensus 67 -~~~~l~~l~~~~N~l~ 82 (175)
..++++.+++++|.+.
T Consensus 367 ~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 367 QPGSVLRVLWLADCDVS 383 (461)
T ss_dssp STTCCCCEEECTTSCCC
T ss_pred CCCCceEEEECCCCCCC
Confidence 1335666666666544
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.07 E-value=5.3e-07 Score=73.63 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=18.4
Q ss_pred EEEeecCcccc----CCChhhcCCcccceeeccccccCc
Q 039964 2 WLACVHFSLTG----QITPKIGQLKSLDFLDLSRNQFFG 36 (175)
Q Consensus 2 ~L~Ls~N~l~g----~iP~~~~~l~~L~~L~Ls~N~l~g 36 (175)
+|+|++|.++. .+|..+..+++|+.|||++|.+++
T Consensus 89 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 89 KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred EEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 45555555552 345555555555555555555543
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.06 E-value=5.4e-07 Score=72.70 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=18.4
Q ss_pred cCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCC
Q 039964 19 GQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLS 59 (175)
Q Consensus 19 ~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~ 59 (175)
..+++|+.|||++|.++.. ++..+...++|++|||++|.++
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 3444455555555544321 2233344444555555555443
No 140
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.91 E-value=1.9e-05 Score=54.29 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=43.2
Q ss_pred EEEeecCccc-cCCChhhcCCcccceeeccccccCccCchhhhCCCCCCEEeccCCcCC
Q 039964 2 WLACVHFSLT-GQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLS 59 (175)
Q Consensus 2 ~L~Ls~N~l~-g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~ 59 (175)
.++.+++.|+ ..+|..+. .+|+.|||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5788888886 45776554 57899999999998444446788899999999998664
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.83 E-value=2.4e-06 Score=68.87 Aligned_cols=81 Identities=16% Similarity=0.093 Sum_probs=51.4
Q ss_pred EEEeecCccccCCChhh-----cCCcccceeeccccccCc----cCchhhhCCCCCCEEeccCCcCCCCC----CCC-cc
Q 039964 2 WLACVHFSLTGQITPKI-----GQLKSLDFLDLSRNQFFG----GISSSLSRLSRLSVMDLSYNNLSGKI----PSG-TQ 67 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~-----~~l~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~L~ls~N~l~g~i----P~~-~~ 67 (175)
.|+|++|.++..-...+ ...++|+.|+|++|.++. .++..+..+++|++|||++|.++..- +.. ..
T Consensus 130 ~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~ 209 (372)
T 3un9_A 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence 57777777764333333 235678888888888763 24455577888888888888876321 111 23
Q ss_pred cCCCCeeeccCccCC
Q 039964 68 LQSFNALTYAGNELC 82 (175)
Q Consensus 68 ~~~l~~l~~~~N~l~ 82 (175)
..+++.+++++|.+.
T Consensus 210 ~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 210 NRQLQELNVAYNGAG 224 (372)
T ss_dssp CSCCCEEECCSSCCC
T ss_pred CCCcCeEECCCCCCC
Confidence 346777777777654
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.81 E-value=2.9e-06 Score=71.34 Aligned_cols=82 Identities=20% Similarity=0.118 Sum_probs=50.2
Q ss_pred EEEeecC--ccccCCChhhcC-CcccceeeccccccCc-cCchhhhCCCCCCEEeccCCcCCCC-CCCC-cccCCCCeee
Q 039964 2 WLACVHF--SLTGQITPKIGQ-LKSLDFLDLSRNQFFG-GISSSLSRLSRLSVMDLSYNNLSGK-IPSG-TQLQSFNALT 75 (175)
Q Consensus 2 ~L~Ls~N--~l~g~iP~~~~~-l~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~L~ls~N~l~g~-iP~~-~~~~~l~~l~ 75 (175)
.|+|+.+ .+++..+..+.. +++|+.|++++|.+++ .++..+..+++|+.|++++|.+++. ++.. ..+++++.++
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 4555432 244443433333 6677777777777765 3455556778888888888877543 2222 3567788888
Q ss_pred ccCccCCC
Q 039964 76 YAGNELCG 83 (175)
Q Consensus 76 ~~~N~l~~ 83 (175)
+++|.+.+
T Consensus 520 ls~n~it~ 527 (592)
T 3ogk_B 520 VQGYRASM 527 (592)
T ss_dssp EESCBCCT
T ss_pred CcCCcCCH
Confidence 88887654
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.62 E-value=2.6e-05 Score=65.52 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=51.3
Q ss_pred CEEEeecCcccc-CCChhhcCCcccceeeccccccCcc-CchhhhCCCCCCEEeccCCcCCCC
Q 039964 1 MWLACVHFSLTG-QITPKIGQLKSLDFLDLSRNQFFGG-ISSSLSRLSRLSVMDLSYNNLSGK 61 (175)
Q Consensus 1 ~~L~Ls~N~l~g-~iP~~~~~l~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~L~ls~N~l~g~ 61 (175)
++|+|++|.+++ .++..+..+++|+.|++++|.+++. ++.....+++|+.|++++|+++..
T Consensus 466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 579999999986 3566678899999999999999765 455567899999999999998765
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.57 E-value=1.7e-05 Score=57.50 Aligned_cols=81 Identities=10% Similarity=0.074 Sum_probs=46.2
Q ss_pred CEEEeecC-ccccC----CChhhcCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCCcCCCC----CCCC-c
Q 039964 1 MWLACVHF-SLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYNNLSGK----IPSG-T 66 (175)
Q Consensus 1 ~~L~Ls~N-~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N~l~g~----iP~~-~ 66 (175)
++|+|++| .+... +...+...++|+.|||++|.+... +...+...++|++|+|++|.+... +... .
T Consensus 39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~ 118 (185)
T 1io0_A 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ 118 (185)
T ss_dssp CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH
Confidence 35777777 66532 334455566777777777777532 333455556777777777776532 1111 2
Q ss_pred ccCCCCeeec--cCccC
Q 039964 67 QLQSFNALTY--AGNEL 81 (175)
Q Consensus 67 ~~~~l~~l~~--~~N~l 81 (175)
...+++.+++ ++|.+
T Consensus 119 ~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 119 SNTSLIELRIDNQSQPL 135 (185)
T ss_dssp GCSSCCEEECCCCSSCC
T ss_pred hCCCceEEEecCCCCCC
Confidence 2345666776 55544
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.54 E-value=1e-05 Score=58.81 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=59.3
Q ss_pred CEEEeecCccccC----CChhhcCCcccceeeccccccCcc----CchhhhCCCCCCEEec--cCCcCCCCCCC----C-
Q 039964 1 MWLACVHFSLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDL--SYNNLSGKIPS----G- 65 (175)
Q Consensus 1 ~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~l--s~N~l~g~iP~----~- 65 (175)
++|+|++|.+... +...+...++|+.|||++|.++.. +...+...++|++|+| ++|.+...--. .
T Consensus 68 ~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L 147 (185)
T 1io0_A 68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML 147 (185)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH
T ss_pred CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH
Confidence 4799999998642 344556668999999999999853 4566788899999999 88988643111 1
Q ss_pred cccCCCCeeeccCccC
Q 039964 66 TQLQSFNALTYAGNEL 81 (175)
Q Consensus 66 ~~~~~l~~l~~~~N~l 81 (175)
...++++.+++++|.+
T Consensus 148 ~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 148 EKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHCSSCCEEECCCSSH
T ss_pred HhCCCcCEEeccCCCC
Confidence 2235788888887754
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.54 E-value=9e-06 Score=68.31 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=36.6
Q ss_pred CcccceeeccccccCccCchhh-hCCCCCCEEeccCCcCCCCCCC-C-cccCCCCeeeccCccC
Q 039964 21 LKSLDFLDLSRNQFFGGISSSL-SRLSRLSVMDLSYNNLSGKIPS-G-TQLQSFNALTYAGNEL 81 (175)
Q Consensus 21 l~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~L~ls~N~l~g~iP~-~-~~~~~l~~l~~~~N~l 81 (175)
+++|+.|+|++|.+++..+..+ ..+++|+.|++++|.+++..+. . ..+++|+.+++++|.+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5667777777777665444443 4567777777777776433222 1 3356677777777644
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.42 E-value=0.00018 Score=56.37 Aligned_cols=82 Identities=16% Similarity=0.091 Sum_probs=51.0
Q ss_pred CEEEeecCccccCCChhhcCCcccceeeccccccCccCchhhhCCCCCC-EEeccCCcCCCCCCCC-cccCCCCeeeccC
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLS-VMDLSYNNLSGKIPSG-TQLQSFNALTYAG 78 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~-~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~ 78 (175)
+.|+|++|+++..-+..|.++.+|+.++|++| ++..-+..|.++++|+ .+++++ .++...+.. ....+|+.+++.+
T Consensus 229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS
T ss_pred eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC
Confidence 35777777777333345777777888888776 6533334577777777 777776 455333332 4456677777766
Q ss_pred ccCCCC
Q 039964 79 NELCGL 84 (175)
Q Consensus 79 N~l~~~ 84 (175)
|.+...
T Consensus 307 n~i~~I 312 (329)
T 3sb4_A 307 DKITTL 312 (329)
T ss_dssp SCCCEE
T ss_pred CccCcc
Confidence 665543
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.34 E-value=5.9e-05 Score=63.31 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=45.9
Q ss_pred CEEEeecCccccCCChhhc-CCcccceeecccc-ccCcc-CchhhhCCCCCCEEeccCCcCCCCCCCC-----cccCCCC
Q 039964 1 MWLACVHFSLTGQITPKIG-QLKSLDFLDLSRN-QFFGG-ISSSLSRLSRLSVMDLSYNNLSGKIPSG-----TQLQSFN 72 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~L~ls~N~l~g~iP~~-----~~~~~l~ 72 (175)
++|+|++|.+++..+..+. .+++|+.|+|++| .++.. ++....++++|++|++++|.+++..+.. ..+++|+
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~ 187 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence 3577777777666555554 5677777777776 44322 3444446777777777777655433221 1334555
Q ss_pred eeeccCc
Q 039964 73 ALTYAGN 79 (175)
Q Consensus 73 ~l~~~~N 79 (175)
.+++++|
T Consensus 188 ~L~l~~~ 194 (594)
T 2p1m_B 188 SLNISCL 194 (594)
T ss_dssp EEECTTC
T ss_pred EEEeccc
Confidence 5555554
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.94 E-value=0.00019 Score=57.63 Aligned_cols=63 Identities=16% Similarity=0.237 Sum_probs=49.1
Q ss_pred CCcccceeeccccccCccCchhhh---CCCCCCEEeccCCcCCCC----CCCC-cccCCCCeeeccCccCC
Q 039964 20 QLKSLDFLDLSRNQFFGGISSSLS---RLSRLSVMDLSYNNLSGK----IPSG-TQLQSFNALTYAGNELC 82 (175)
Q Consensus 20 ~l~~L~~L~Ls~N~l~g~iP~~~~---~l~~L~~L~ls~N~l~g~----iP~~-~~~~~l~~l~~~~N~l~ 82 (175)
.+++|+.|+|++|.+.+..+..+. .+++|++|||++|.+.+. ++.. ..+++|+.++++.|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 478999999999998765554444 578999999999998863 3443 45678999999888664
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.79 E-value=0.0024 Score=43.58 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=42.9
Q ss_pred ceeeccccccC-ccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeeeccCccC
Q 039964 25 DFLDLSRNQFF-GGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALTYAGNEL 81 (175)
Q Consensus 25 ~~L~Ls~N~l~-g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~~~~N~l 81 (175)
..+|.+++.|+ ..+|..+ -++|+.|+|++|+|+...+.. ..+.+++.+++.+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47899999996 4677542 246999999999999665554 5678899999999944
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.66 E-value=0.00056 Score=49.46 Aligned_cols=31 Identities=6% Similarity=0.045 Sum_probs=14.4
Q ss_pred EEEeecCccccCCChhhcCCcccceeecccc
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRN 32 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N 32 (175)
.||||++.++..=-..+..+++|+.|+|+++
T Consensus 65 ~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 65 AIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp EEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred EEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3555555444322233444555555555554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.56 E-value=0.0011 Score=53.21 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=54.7
Q ss_pred CEEEeecCccccCCChhhc--CCcccceeeccc--cccCcc-----Cchhh--hCCCCCCEEeccCCcCCCCCCC----C
Q 039964 1 MWLACVHFSLTGQITPKIG--QLKSLDFLDLSR--NQFFGG-----ISSSL--SRLSRLSVMDLSYNNLSGKIPS----G 65 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~--~l~~L~~L~Ls~--N~l~g~-----iP~~~--~~l~~L~~L~ls~N~l~g~iP~----~ 65 (175)
+.|+|+.+.++......+. .+++|+.|+|+. |...|. +...+ ..+++|+.|+|.+|.+....+. .
T Consensus 196 ~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a 275 (362)
T 2ra8_A 196 KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES 275 (362)
T ss_dssp SEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC
T ss_pred cEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC
Confidence 4688888877644334444 789999999864 332222 11122 3578999999999988643321 1
Q ss_pred cccCCCCeeeccCccCCC
Q 039964 66 TQLQSFNALTYAGNELCG 83 (175)
Q Consensus 66 ~~~~~l~~l~~~~N~l~~ 83 (175)
..+++|+.++++.|.+.+
T Consensus 276 ~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 276 DILPQLETMDISAGVLTD 293 (362)
T ss_dssp SSGGGCSEEECCSSCCBH
T ss_pred ccCCCCCEEECCCCCCCh
Confidence 246789999999887654
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.47 E-value=0.0039 Score=48.69 Aligned_cols=73 Identities=8% Similarity=-0.094 Sum_probs=54.5
Q ss_pred CEEEeecCccccCCChhhcCCcccc-eeeccccccCccCchhhhCCCCCCEEeccCCcCCCCCCCC-cccCCCCeee
Q 039964 1 MWLACVHFSLTGQITPKIGQLKSLD-FLDLSRNQFFGGISSSLSRLSRLSVMDLSYNNLSGKIPSG-TQLQSFNALT 75 (175)
Q Consensus 1 ~~L~Ls~N~l~g~iP~~~~~l~~L~-~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~-~~~~~l~~l~ 75 (175)
+.|+|++| ++..-+..|.++.+|+ .+++.+ +++..-+..|.++++|+.++++.|+++...+.. ....+|+.+.
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 46888888 7644446789999999 999999 777344578999999999999999998555443 4444555443
No 154
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.13 E-value=0.024 Score=41.57 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=20.3
Q ss_pred hcCCcccceeeccccccCc----cCchhhhCCCCCCEEeccCCcCC
Q 039964 18 IGQLKSLDFLDLSRNQFFG----GISSSLSRLSRLSVMDLSYNNLS 59 (175)
Q Consensus 18 ~~~l~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~L~ls~N~l~ 59 (175)
+..-.+|+.|+|++|.+.. .+-..+..-++|++|+|++|++.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3334455555555555542 12222333455555555555554
No 155
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=93.99 E-value=0.031 Score=30.67 Aligned_cols=27 Identities=7% Similarity=-0.025 Sum_probs=13.1
Q ss_pred eeeeehhHHHHHHHHHHHHHhhcccch
Q 039964 118 FYVSLILGFFVGFWGFCGTLLVKSSWR 144 (175)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~~~~~~~r 144 (175)
++.+++.|+++.++++++.+++.++++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 444455555555544444444444443
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.48 E-value=0.24 Score=39.84 Aligned_cols=75 Identities=12% Similarity=0.039 Sum_probs=40.6
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccC-----ccCchhhhCCCCCCEEeccCCcCCCCCCCC--cccCCCCee
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFF-----GGISSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNAL 74 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~-----g~iP~~~~~l~~L~~L~ls~N~l~g~iP~~--~~~~~l~~l 74 (175)
.+.+ .|.++..-+..|.++++|+.+++.+|.+. -.-+..|..+++|+.+++.+ .++ .++.. ....+|+.+
T Consensus 252 ~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 252 TVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQL 328 (401)
T ss_dssp EEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEE
T ss_pred EEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEE
Confidence 3445 33344223456777777777777776654 12234566777777777763 344 33332 333455555
Q ss_pred eccCc
Q 039964 75 TYAGN 79 (175)
Q Consensus 75 ~~~~N 79 (175)
.+..|
T Consensus 329 ~lp~~ 333 (401)
T 4fdw_A 329 TIPAN 333 (401)
T ss_dssp EECTT
T ss_pred EECcc
Confidence 55443
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.34 E-value=0.17 Score=40.81 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=20.8
Q ss_pred hhhcCCcccceeeccccccCccCchhhhCCCCCCEEecc
Q 039964 16 PKIGQLKSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLS 54 (175)
Q Consensus 16 ~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls 54 (175)
..|.++.+|+.++|++|.++ .||......+.|+.+.+.
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp STTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECC
T ss_pred HHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeC
Confidence 45666666777777666665 444332234455555554
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.62 E-value=0.042 Score=40.23 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=40.3
Q ss_pred CEEEeecCccccC----CChhhcCCcccceeeccccccCcc----CchhhhCCCCCCEEeccCC
Q 039964 1 MWLACVHFSLTGQ----ITPKIGQLKSLDFLDLSRNQFFGG----ISSSLSRLSRLSVMDLSYN 56 (175)
Q Consensus 1 ~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~ls~N 56 (175)
+.|+|++|.+... |-+.+..-++|+.|+|++|.+... +-..+..-++|++|+|++|
T Consensus 73 ~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 73 EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 4689999988632 233444557899999999999743 3334556677999999865
No 159
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=91.17 E-value=0.086 Score=28.83 Aligned_cols=27 Identities=11% Similarity=-0.075 Sum_probs=12.8
Q ss_pred eeeeehhHHHHHHHHHHHHHhhcccch
Q 039964 118 FYVSLILGFFVGFWGFCGTLLVKSSWR 144 (175)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~~~~~~~r 144 (175)
++.+++.|+++.++++.+.+++.|+++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 344444445554444444444444443
No 160
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=90.63 E-value=0.078 Score=28.09 Aligned_cols=24 Identities=29% Similarity=0.431 Sum_probs=15.1
Q ss_pred ceeeeeehhHHHHHHHHHHHHHhh
Q 039964 116 LGFYVSLILGFFVGFWGFCGTLLV 139 (175)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~~~ 139 (175)
...++++++|.++++.++.+..++
T Consensus 10 ~GaIAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeeehHHHHHHHHHHHHHHH
Confidence 345677788877766655554444
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=90.63 E-value=0.23 Score=35.62 Aligned_cols=61 Identities=10% Similarity=0.087 Sum_probs=41.5
Q ss_pred cccceeeccccccCccCchhhhCCCCCCEEeccCCc-CCCCCCCC-ccc----CCCCeeeccCc-cCC
Q 039964 22 KSLDFLDLSRNQFFGGISSSLSRLSRLSVMDLSYNN-LSGKIPSG-TQL----QSFNALTYAGN-ELC 82 (175)
Q Consensus 22 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ls~N~-l~g~iP~~-~~~----~~l~~l~~~~N-~l~ 82 (175)
-.|+.||++++.++..=-..+..+++|++|+|+++. ++..--.. ... ++|+.++++++ .++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 469999999999875433457889999999999985 43210000 111 25888888886 454
No 162
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=86.48 E-value=0.14 Score=27.94 Aligned_cols=13 Identities=15% Similarity=0.352 Sum_probs=6.7
Q ss_pred eeeeehhHHHHHH
Q 039964 118 FYVSLILGFFVGF 130 (175)
Q Consensus 118 ~~~~~~~g~~~~~ 130 (175)
.+++.++|+++.+
T Consensus 13 ~Ia~~vVGvll~v 25 (44)
T 2jwa_A 13 SIISAVVGILLVV 25 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 4556666644333
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=82.13 E-value=2.8 Score=33.04 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=18.4
Q ss_pred hcCCcccceeeccccccCccC-chhhhCCCCCCEEeccC
Q 039964 18 IGQLKSLDFLDLSRNQFFGGI-SSSLSRLSRLSVMDLSY 55 (175)
Q Consensus 18 ~~~l~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~L~ls~ 55 (175)
+..+.+|+.+.+..+ ++ .| ...|.++++|+.+++.+
T Consensus 293 F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp TTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCT
T ss_pred ccccccccccccccc-cc-eechhhhcCCCCCCEEEeCC
Confidence 445555666655443 33 23 23455566666666543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=78.99 E-value=4.8 Score=31.35 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=16.2
Q ss_pred hcCCcccceeeccccccCccC-chhhhCCCCCCEEecc
Q 039964 18 IGQLKSLDFLDLSRNQFFGGI-SSSLSRLSRLSVMDLS 54 (175)
Q Consensus 18 ~~~l~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~L~ls 54 (175)
|..+.+|+.+++.++.++ .| ...|.++.+|+.++|.
T Consensus 282 F~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccccccc-eehhhhhcCCCCCCEEEcC
Confidence 344444555555444444 22 2234444555555544
No 165
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=78.22 E-value=0.73 Score=24.43 Aligned_cols=10 Identities=10% Similarity=0.262 Sum_probs=4.0
Q ss_pred eeeehhHHHH
Q 039964 119 YVSLILGFFV 128 (175)
Q Consensus 119 ~~~~~~g~~~ 128 (175)
..+++.|+++
T Consensus 16 ~~~vv~Gv~l 25 (41)
T 2k9y_A 16 IGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHH
T ss_pred EeehhHHHHH
Confidence 3334444443
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=74.60 E-value=6.9 Score=30.75 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=15.0
Q ss_pred hcCCcccceeeccccccCccCc-hhhhCCCCCCEEecc
Q 039964 18 IGQLKSLDFLDLSRNQFFGGIS-SSLSRLSRLSVMDLS 54 (175)
Q Consensus 18 ~~~l~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~L~ls 54 (175)
|.++..|+.+++. +.++ .|+ ..|.++.+|+.+++.
T Consensus 284 F~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp TTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECC
T ss_pred cccccccccccCC-Cccc-ccCceeecCCCCcCEEEeC
Confidence 3444555555553 2232 222 234444555555544
No 167
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=68.30 E-value=2.7 Score=21.43 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=15.3
Q ss_pred eeeehhHHHHHHHHHHHHHhhcccch
Q 039964 119 YVSLILGFFVGFWGFCGTLLVKSSWR 144 (175)
Q Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~~~~r 144 (175)
++.+++|.++++.++...++.+|.+|
T Consensus 9 alt~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEEEcccc
Confidence 34456667766666666666655444
No 168
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=67.84 E-value=0.34 Score=25.02 Aligned_cols=7 Identities=14% Similarity=0.653 Sum_probs=3.0
Q ss_pred eeeehhH
Q 039964 119 YVSLILG 125 (175)
Q Consensus 119 ~~~~~~g 125 (175)
+++.++|
T Consensus 10 IaagVvg 16 (35)
T 1iij_A 10 IIATVVG 16 (35)
T ss_dssp HHHHHHH
T ss_pred eHHHHHH
Confidence 3344444
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=66.65 E-value=5.6 Score=30.94 Aligned_cols=53 Identities=9% Similarity=0.011 Sum_probs=37.8
Q ss_pred EEEeecCccccCCChhhcCCcccceeeccccccCccCc-hhhhCCCCCCEEeccCC
Q 039964 2 WLACVHFSLTGQITPKIGQLKSLDFLDLSRNQFFGGIS-SSLSRLSRLSVMDLSYN 56 (175)
Q Consensus 2 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~L~ls~N 56 (175)
.+.+.++.++-.-...|.++.+|+.++|..+ ++ .|+ ..|.++++|+.+.+..+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 4566667676333467889999999999765 65 454 46888999998876543
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=64.92 E-value=5.4 Score=31.41 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=44.7
Q ss_pred ChhhcCCcccceeeccccccCccC-chhhhCCCCCCEEeccCCcCCCCCCCC--cccCCCCeeeccCc
Q 039964 15 TPKIGQLKSLDFLDLSRNQFFGGI-SSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNALTYAGN 79 (175)
Q Consensus 15 P~~~~~l~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~L~ls~N~l~g~iP~~--~~~~~l~~l~~~~N 79 (175)
...|.++.+|+.++|.++ ++ .| ...|.++++|+.+++..| ++ .++.. ....+|+.+.+..+
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred hhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 356888999999999754 65 45 457889999999999876 55 44443 44567888887665
No 171
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=60.37 E-value=15 Score=28.76 Aligned_cols=60 Identities=18% Similarity=0.384 Sum_probs=44.2
Q ss_pred hhhcCCcccceeeccccccCccC-chhhhCCCCCCEEeccCCcCCCCCCCC--cccCCCCeeeccCc
Q 039964 16 PKIGQLKSLDFLDLSRNQFFGGI-SSSLSRLSRLSVMDLSYNNLSGKIPSG--TQLQSFNALTYAGN 79 (175)
Q Consensus 16 ~~~~~l~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~L~ls~N~l~g~iP~~--~~~~~l~~l~~~~N 79 (175)
..|.++.+|+.++|..+ ++ .| ...|.++++|+.+.+..+ ++ .|... ....+|+.+.+.+|
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred eeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence 45788899999999865 55 44 346889999999999765 44 45443 44567888888877
No 172
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=58.87 E-value=3.6 Score=20.83 Aligned_cols=25 Identities=12% Similarity=0.091 Sum_probs=15.1
Q ss_pred eeeeeehhHHHHHHHHHHHHHhhcc
Q 039964 117 GFYVSLILGFFVGFWGFCGTLLVKS 141 (175)
Q Consensus 117 ~~~~~~~~g~~~~~~~~~~~~~~~~ 141 (175)
+.++++++|.+++.+++...+++..
T Consensus 7 gaIaGIVvgdi~~t~~i~~~vy~~~ 31 (33)
T 2l34_A 7 GVLAGIVVGDLVLTVLIALAVYFLG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEeEeHHHHHHHHHHHHHHhhee
Confidence 3456677777666666665555543
No 173
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=47.30 E-value=14 Score=21.80 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=5.8
Q ss_pred ehhHHHHHHHHHH
Q 039964 122 LILGFFVGFWGFC 134 (175)
Q Consensus 122 ~~~g~~~~~~~~~ 134 (175)
+++|.++++++.+
T Consensus 12 ivlGg~~~lll~~ 24 (70)
T 2klu_A 12 IVLGGVAGLLLFI 24 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH
Confidence 3445444444433
No 174
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=37.97 E-value=9.8 Score=20.35 Aligned_cols=7 Identities=14% Similarity=0.420 Sum_probs=3.0
Q ss_pred eeeeehh
Q 039964 118 FYVSLIL 124 (175)
Q Consensus 118 ~~~~~~~ 124 (175)
.++++.+
T Consensus 18 a~iGL~v 24 (43)
T 2llm_A 18 AIIGLMV 24 (43)
Confidence 3444443
No 175
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=24.61 E-value=16 Score=32.55 Aligned_cols=19 Identities=5% Similarity=-0.071 Sum_probs=0.0
Q ss_pred eeeeeehhHHHHHHHHHHH
Q 039964 117 GFYVSLILGFFVGFWGFCG 135 (175)
Q Consensus 117 ~~~~~~~~g~~~~~~~~~~ 135 (175)
++++++.+|++++++++++
T Consensus 705 ~aii~il~~~~~ll~~~ll 723 (880)
T 1q55_A 705 PIILVILGSVLALLILFLL 723 (880)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555444443333
No 176
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=20.48 E-value=30 Score=17.48 Aligned_cols=12 Identities=17% Similarity=-0.020 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q 039964 124 LGFFVGFWGFCG 135 (175)
Q Consensus 124 ~g~~~~~~~~~~ 135 (175)
.+++++.|..+.
T Consensus 16 g~~I~i~W~~vf 27 (34)
T 3s8f_C 16 TLTILVFWLGVY 27 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334444333
No 177
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=25.33 E-value=22 Score=23.35 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=10.2
Q ss_pred eeeeehhHHHHHHHHHHHHHhhcc
Q 039964 118 FYVSLILGFFVGFWGFCGTLLVKS 141 (175)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~~~~~ 141 (175)
.++++.++.++++.++++.+++.+
T Consensus 31 a~igL~v~~vai~~viVv~l~v~r 54 (122)
T 2lp1_A 31 AIIGLMVGGVVIATVIVITLVMLK 54 (122)
Confidence 344554444444433333334433
Done!