Query 039965
Match_columns 419
No_of_seqs 250 out of 1519
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 5.8E-59 1.3E-63 457.8 39.8 321 57-410 82-430 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 2.4E-56 5.1E-61 441.1 31.2 305 48-417 109-457 (482)
3 KOG1339 Aspartyl protease [Pos 100.0 8E-54 1.7E-58 419.3 32.5 326 49-409 36-397 (398)
4 cd05478 pepsin_A Pepsin A, asp 100.0 2.3E-54 5E-59 412.2 27.4 285 50-405 1-317 (317)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 4.1E-54 8.9E-59 412.0 28.6 287 54-405 1-325 (325)
6 cd06098 phytepsin Phytepsin, a 100.0 8.2E-54 1.8E-58 408.0 28.8 279 51-405 2-317 (317)
7 cd05487 renin_like Renin stimu 100.0 1.3E-53 2.8E-58 408.4 28.1 289 52-406 1-326 (326)
8 cd05486 Cathespin_E Cathepsin 100.0 1.5E-53 3.3E-58 406.4 26.6 280 60-405 1-316 (316)
9 cd05472 cnd41_like Chloroplast 100.0 1.1E-52 2.4E-57 397.6 31.9 282 59-408 1-299 (299)
10 cd05477 gastricsin Gastricsins 100.0 6.3E-53 1.4E-57 402.6 28.5 282 57-406 1-318 (318)
11 PTZ00147 plasmepsin-1; Provisi 100.0 8.3E-53 1.8E-57 412.8 29.3 291 47-407 127-450 (453)
12 cd05488 Proteinase_A_fungi Fun 100.0 6.6E-53 1.4E-57 402.5 27.6 285 51-405 2-320 (320)
13 cd05485 Cathepsin_D_like Cathe 100.0 6.2E-53 1.4E-57 403.8 27.5 290 50-405 2-329 (329)
14 cd05473 beta_secretase_like Be 100.0 3.4E-52 7.3E-57 404.4 29.9 303 59-411 3-350 (364)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 3.4E-52 7.5E-57 407.6 29.8 291 47-407 126-449 (450)
16 cd06096 Plasmepsin_5 Plasmepsi 100.0 6.1E-52 1.3E-56 396.7 30.1 278 58-409 2-326 (326)
17 cd05489 xylanase_inhibitor_I_l 100.0 1.1E-49 2.5E-54 383.6 32.7 314 66-406 2-361 (362)
18 cd05476 pepsin_A_like_plant Ch 100.0 1.9E-49 4.1E-54 368.8 27.2 246 59-408 1-265 (265)
19 cd06097 Aspergillopepsin_like 100.0 3.4E-48 7.4E-53 363.0 23.6 247 60-405 1-278 (278)
20 cd05475 nucellin_like Nucellin 100.0 4.9E-47 1.1E-51 353.8 27.5 244 59-408 2-273 (273)
21 cd05474 SAP_like SAPs, pepsin- 100.0 5.2E-47 1.1E-51 358.6 23.9 268 59-406 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 1.2E-46 2.5E-51 359.9 16.0 282 59-406 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 4.2E-42 9.2E-47 323.0 24.4 249 60-405 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 7E-28 1.5E-32 206.5 11.6 144 60-210 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 1.3E-24 2.8E-29 186.2 15.8 156 238-405 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.8 5.1E-20 1.1E-24 147.3 9.4 91 62-177 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.0 1.4E-05 3E-10 61.6 6.6 86 59-179 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.0 0.0038 8.2E-08 50.4 8.1 89 56-178 8-102 (121)
29 PF13650 Asp_protease_2: Aspar 96.2 0.017 3.8E-07 43.4 6.3 83 62-178 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.5 0.12 2.6E-06 41.8 9.0 25 379-403 100-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 95.5 0.095 2E-06 42.4 8.2 87 57-178 14-106 (124)
32 cd05484 retropepsin_like_LTR_2 93.3 0.1 2.3E-06 39.5 3.7 26 60-87 1-26 (91)
33 PF08284 RVP_2: Retroviral asp 93.2 1 2.2E-05 37.0 9.5 28 379-406 105-132 (135)
34 COG3577 Predicted aspartyl pro 92.3 0.34 7.3E-06 42.1 5.6 84 49-166 95-178 (215)
35 PF13975 gag-asp_proteas: gag- 90.2 0.56 1.2E-05 33.8 4.3 31 56-88 5-35 (72)
36 PF11925 DUF3443: Protein of u 89.4 2.4 5.2E-05 40.4 8.9 41 140-181 83-150 (370)
37 TIGR03698 clan_AA_DTGF clan AA 88.7 2.8 6.1E-05 32.8 7.6 23 379-401 85-107 (107)
38 TIGR02281 clan_AA_DTGA clan AA 85.5 1.8 4E-05 34.7 5.0 35 237-289 10-44 (121)
39 PF00077 RVP: Retroviral aspar 85.1 1.4 3.1E-05 33.7 4.1 27 61-89 7-33 (100)
40 PF13650 Asp_protease_2: Aspar 84.9 1.2 2.6E-05 33.1 3.5 29 246-289 3-31 (90)
41 PF07172 GRP: Glycine rich pro 84.3 0.59 1.3E-05 35.7 1.5 19 1-20 1-19 (95)
42 cd05484 retropepsin_like_LTR_2 82.5 1.9 4E-05 32.6 3.7 30 245-289 4-33 (91)
43 PF13975 gag-asp_proteas: gag- 82.1 2.6 5.7E-05 30.3 4.2 30 245-289 12-41 (72)
44 cd06095 RP_RTVL_H_like Retrope 79.8 2.5 5.4E-05 31.6 3.5 23 63-87 2-24 (86)
45 cd05483 retropepsin_like_bacte 77.4 4.4 9.5E-05 30.4 4.4 30 245-289 6-35 (96)
46 cd05482 HIV_retropepsin_like R 77.4 3.3 7.2E-05 31.1 3.5 23 63-87 2-24 (87)
47 cd06095 RP_RTVL_H_like Retrope 76.7 3.4 7.3E-05 30.8 3.4 29 246-289 3-31 (86)
48 cd06094 RP_Saci_like RP_Saci_l 68.6 19 0.00042 27.0 5.7 22 265-286 7-28 (89)
49 PF02160 Peptidase_A3: Caulifl 67.8 14 0.00031 32.3 5.6 26 379-405 92-117 (201)
50 PF00077 RVP: Retroviral aspar 67.4 5.6 0.00012 30.4 2.8 27 245-286 9-35 (100)
51 PF12384 Peptidase_A2B: Ty3 tr 65.5 8.6 0.00019 32.3 3.6 27 62-88 35-61 (177)
52 cd05481 retropepsin_like_LTR_1 60.7 10 0.00023 28.7 3.2 21 269-289 12-32 (93)
53 PF09668 Asp_protease: Asparty 60.2 12 0.00027 30.1 3.6 30 245-289 28-57 (124)
54 PF09668 Asp_protease: Asparty 58.8 16 0.00034 29.4 4.0 29 57-87 22-50 (124)
55 COG3577 Predicted aspartyl pro 57.0 23 0.00051 31.0 4.9 35 237-289 104-138 (215)
56 COG5550 Predicted aspartyl pro 39.9 19 0.00041 28.8 1.7 20 270-289 29-49 (125)
57 PF05887 Trypan_PARP: Procycli 38.1 11 0.00023 30.4 0.0 21 1-21 1-21 (143)
58 TIGR03698 clan_AA_DTGF clan AA 33.4 56 0.0012 25.4 3.4 26 62-87 2-32 (107)
59 PF12384 Peptidase_A2B: Ty3 tr 27.7 1E+02 0.0022 26.2 4.0 22 268-289 46-67 (177)
60 KOG0012 DNA damage inducible p 27.0 3.6E+02 0.0077 26.0 8.0 106 245-407 239-347 (380)
61 cd00303 retropepsin_like Retro 25.3 69 0.0015 22.2 2.6 22 63-86 2-23 (92)
62 cd05480 NRIP_C NRIP_C; putativ 24.2 1.1E+02 0.0024 23.6 3.4 21 269-289 11-31 (103)
63 PF08284 RVP_2: Retroviral asp 23.2 1.2E+02 0.0026 24.7 3.9 26 60-87 22-47 (135)
64 COG2913 OlmA Outer membrane li 21.1 48 0.0011 27.5 1.1 17 65-86 61-77 (147)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=5.8e-59 Score=457.75 Aligned_cols=321 Identities=32% Similarity=0.590 Sum_probs=261.9
Q ss_pred ceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC--C--CCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 039965 57 NVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT--V--SFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPK 132 (419)
Q Consensus 57 ~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~--~--~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~ 132 (419)
+..|+++|.||||||++.|+|||||+++||+|.+| | +.++.|||++|+||+.+.|.++.|+.... ...|..+
T Consensus 82 ~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~----~~~c~~~ 157 (431)
T PLN03146 82 GGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN----QASCSDE 157 (431)
T ss_pred CccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCC----CCCCCCC
Confidence 56899999999999999999999999999999886 3 34689999999999999999999975432 3457766
Q ss_pred CCCeeEEecCCCCeeeeEEEEEEEEeCCC-----CCCCC------C-----CCCcceeeeccCCCCchhhhhcC---Cee
Q 039965 133 GLCRVTLTYADLTSTEGNLATETILIGGP-----ARPGF------E-----DARTTGLMGMNRGSLSFITQMGF---PKF 193 (419)
Q Consensus 133 ~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~-----~~~~~------~-----~~~~~GIlGLg~~~~s~~~ql~~---~~F 193 (419)
+.|.|.+.|+||+.+.|.+++|+|+|++. +++++ . ....+||||||+...|+++|+.. ++|
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~F 237 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKF 237 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcE
Confidence 77999999999987899999999999974 35554 1 12578999999999999999765 689
Q ss_pred EEeecCC----CCCceEEeCCCCccCC-CCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCCCCCC
Q 039965 194 SYCISGV----DSSGVLLFGDASFAWL-KPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAG 268 (419)
Q Consensus 194 s~~l~~~----~~~G~l~fGg~d~~~~-g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 268 (419)
|+||.+. ...|.|+||+. .++. +.+.|+|++.... ..+|.|+|++|+||++.+.++...+. ..+.+
T Consensus 238 SycL~~~~~~~~~~g~l~fG~~-~~~~~~~~~~tPl~~~~~------~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g 308 (431)
T PLN03146 238 SYCLVPLSSDSNGTSKINFGTN-AIVSGSGVVSTPLVSKDP------DTFYYLTLEAISVGSKKLPYTGSSKN--GVEEG 308 (431)
T ss_pred EEECCCCCCCCCCcceEEeCCc-cccCCCCceEcccccCCC------CCeEEEeEEEEEECCEECcCCccccc--cCCCC
Confidence 9999642 24799999995 3444 3589999986421 25799999999999999887665553 13346
Q ss_pred cEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEEEEccc
Q 039965 269 QTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGE 348 (419)
Q Consensus 269 ~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~i~~~ 348 (419)
.+||||||++++||+++|++|+++|.+.+..... ... .+.+..||.... ...+|+|+|+|+|+++.|+|+
T Consensus 309 ~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~--~~~----~~~~~~C~~~~~----~~~~P~i~~~F~Ga~~~l~~~ 378 (431)
T PLN03146 309 NIIIDSGTTLTLLPSDFYSELESAVEEAIGGERV--SDP----QGLLSLCYSSTS----DIKLPIITAHFTGADVKLQPL 378 (431)
T ss_pred cEEEeCCccceecCHHHHHHHHHHHHHHhccccC--CCC----CCCCCccccCCC----CCCCCeEEEEECCCeeecCcc
Confidence 7999999999999999999999999988864211 111 113568998532 146899999999999999999
Q ss_pred ceeEEecCccCCCCceEEEEEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCCCCc
Q 039965 349 RLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDI 410 (419)
Q Consensus 349 ~y~~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~~ 410 (419)
+|+++. .++..|+++.... +.||||+.|||++|+|||++++|||||+++|+.
T Consensus 379 ~~~~~~------~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 379 NTFVKV------SEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred eeEEEc------CCCcEEEEEecCC----CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 999985 3456899877543 359999999999999999999999999999975
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.4e-56 Score=441.10 Aligned_cols=305 Identities=19% Similarity=0.283 Sum_probs=245.0
Q ss_pred cccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 039965 48 TANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDL 123 (419)
Q Consensus 48 ~~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~ 123 (419)
...+|.|+.|.+|+++|+||||||+++|+|||||+++||+|..| |..|+.||+++|+||+...+..
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~---------- 178 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD---------- 178 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC----------
Confidence 35789999999999999999999999999999999999988765 6778999999999998843110
Q ss_pred CCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCc-------
Q 039965 124 PVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLS------- 183 (419)
Q Consensus 124 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s------- 183 (419)
....+.+.|++| .+.|.+++|+|++|+.+++++ ....+|||||||++..+
T Consensus 179 ---------~~~~~~i~YGsG-s~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~ 248 (482)
T PTZ00165 179 ---------ESAETYIQYGTG-ECVLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKA 248 (482)
T ss_pred ---------ccceEEEEeCCC-cEEEEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCC
Confidence 012577999999 688999999999999888775 22357999999998752
Q ss_pred --hhhh------hcCCeeEEeecCCC-CCceEEeCCCCcc-C--CCCcccccccccCCCCCCCCCeeEEEEeeeEEECCE
Q 039965 184 --FITQ------MGFPKFSYCISGVD-SSGVLLFGDASFA-W--LKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSK 251 (419)
Q Consensus 184 --~~~q------l~~~~Fs~~l~~~~-~~G~l~fGg~d~~-~--~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~ 251 (419)
++.+ +..++||+||.++. .+|+|+|||+|++ + .|++.|+|+... .+|+|++++|+|+++
T Consensus 249 ~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~---------~yW~i~l~~i~vgg~ 319 (482)
T PTZ00165 249 LPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST---------DYWEIEVVDILIDGK 319 (482)
T ss_pred CCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc---------ceEEEEeCeEEECCE
Confidence 2333 34589999998643 5799999999988 4 578999999864 489999999999998
Q ss_pred EeeCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCC
Q 039965 252 VLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRL 331 (419)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 331 (419)
.+... ..+..+++||||+++++|.+++++|.+++.. ..+|+.. +.+
T Consensus 320 ~~~~~--------~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~-------------------~~~C~~~-------~~l 365 (482)
T PTZ00165 320 SLGFC--------DRKCKAAIDTGSSLITGPSSVINPLLEKIPL-------------------EEDCSNK-------DSL 365 (482)
T ss_pred Eeeec--------CCceEEEEcCCCccEeCCHHHHHHHHHHcCC-------------------ccccccc-------ccC
Confidence 77542 2346799999999999999999988765421 1268765 578
Q ss_pred CeEEEEEcCc-----EEEEcccceeEEecCccCCCCceEEE-EEEcCCCC--CCceeeeeccceeeeEEEEECCCCEEEE
Q 039965 332 PIVSLMFSGA-----EMSVSGERLLYRVPGLSRGRDSVYCF-TFGNSDLL--GIEAFVIGHHHQQNLWVEFDLINSRVGF 403 (419)
Q Consensus 332 P~i~f~f~g~-----~~~i~~~~y~~~~~~~~~~~~~~~C~-~i~~~~~~--~~~~~iLG~~fl~~~y~vfD~~~~riGf 403 (419)
|+|+|+|+|. ++.|+|++|+++... ...++..|+ +|+..+.. .++.||||++|||++|+|||.+++||||
T Consensus 366 P~itf~f~g~~g~~v~~~l~p~dYi~~~~~--~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGf 443 (482)
T PTZ00165 366 PRISFVLEDVNGRKIKFDMDPEDYVIEEGD--SEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGL 443 (482)
T ss_pred CceEEEECCCCCceEEEEEchHHeeeeccc--CCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEE
Confidence 9999999864 899999999997310 123456898 58875432 3467999999999999999999999999
Q ss_pred EcCCCCcccccccc
Q 039965 404 AEVRCDIASKRLGI 417 (419)
Q Consensus 404 a~~~c~~~~~~~~~ 417 (419)
|+++|+.+......
T Consensus 444 A~a~~~~~~~~~~~ 457 (482)
T PTZ00165 444 VPAKHDQSGPNFQE 457 (482)
T ss_pred EeeccCCCCCcEEE
Confidence 99999877665443
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-54 Score=419.32 Aligned_cols=326 Identities=37% Similarity=0.623 Sum_probs=266.5
Q ss_pred ccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCC---CC-CCC-CCCCCCCCcccccCCCCCCCCCCCCC
Q 039965 49 ANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTV---SF-NSI-FNPLLSSSYSPVPCNSPTCKIKTQDL 123 (419)
Q Consensus 49 ~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~---~~-~~~-f~~~~SsT~~~~~c~~~~c~~~~~~~ 123 (419)
...+..+.++.|+++|+||||||+|.|+|||||+++||+|..|. .. +.. |+|++|+||+.+.|.+..|....+
T Consensus 36 ~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~-- 113 (398)
T KOG1339|consen 36 PESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ-- 113 (398)
T ss_pred ccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCcccccccc--
Confidence 34455666778999999999999999999999999999998773 22 444 999999999999999999987543
Q ss_pred CCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCC---CCCCCC-------C-----C-CCcceeeeccCCCCchhhh
Q 039965 124 PVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGG---PARPGF-------E-----D-ARTTGLMGMNRGSLSFITQ 187 (419)
Q Consensus 124 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~---~~~~~~-------~-----~-~~~~GIlGLg~~~~s~~~q 187 (419)
.|..++.|.|.+.|++|+.+.|.+++|+|++++ ..++++ . . ...+||||||+..+++..|
T Consensus 114 ----~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q 189 (398)
T KOG1339|consen 114 ----SCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQ 189 (398)
T ss_pred ----CcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceee
Confidence 277788999999999987999999999999998 555444 1 1 4689999999999999999
Q ss_pred hcC-----CeeEEeecCCC----CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCC
Q 039965 188 MGF-----PKFSYCISGVD----SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPK 257 (419)
Q Consensus 188 l~~-----~~Fs~~l~~~~----~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 257 (419)
+.. ++||+||.+.+ ..|.|+||+.|+. +.+.+.|+|++.... .+|.+++++|+|+++. .++.
T Consensus 190 ~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-------~~y~v~l~~I~vgg~~-~~~~ 261 (398)
T KOG1339|consen 190 LPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-------TYYQVNLDGISVGGKR-PIGS 261 (398)
T ss_pred cccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC-------ccEEEEEeEEEECCcc-CCCc
Confidence 776 45999999864 3799999999987 889999999998752 3799999999999987 6665
Q ss_pred cccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEE
Q 039965 258 SVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLM 337 (419)
Q Consensus 258 ~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~ 337 (419)
..+.. ...++|+||||++++||.++|++|.+++.+++.. .... ..+...|+...... ..+|.|+|+
T Consensus 262 ~~~~~---~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~---~~~~-----~~~~~~C~~~~~~~---~~~P~i~~~ 327 (398)
T KOG1339|consen 262 SLFCT---DGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV---VGTD-----GEYFVPCFSISTSG---VKLPDITFH 327 (398)
T ss_pred ceEec---CCCCEEEECCcceeeccHHHHHHHHHHHHhheec---cccC-----CceeeecccCCCCc---ccCCcEEEE
Confidence 55542 2688999999999999999999999999886400 0001 12366999875211 249999999
Q ss_pred Ec-CcEEEEcccceeEEecCccCCCCceE-EEEEEcCCCCCCceeeeeccceeeeEEEEECC-CCEEEEEc--CCCC
Q 039965 338 FS-GAEMSVSGERLLYRVPGLSRGRDSVY-CFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLI-NSRVGFAE--VRCD 409 (419)
Q Consensus 338 f~-g~~~~i~~~~y~~~~~~~~~~~~~~~-C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~-~~riGfa~--~~c~ 409 (419)
|+ |+.|.+++++|+++. ..... |+++....... +.||||+.|||+++++||.. ++|||||+ ..|.
T Consensus 328 f~~g~~~~l~~~~y~~~~------~~~~~~Cl~~~~~~~~~-~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 328 FGGGAVFSLPPKNYLVEV------SDGGGVCLAFFNGMDSG-PLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred ECCCcEEEeCccceEEEE------CCCCCceeeEEecCCCC-ceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 99 899999999999986 22222 99855543322 57999999999999999999 99999999 6675
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.3e-54 Score=412.18 Aligned_cols=285 Identities=22% Similarity=0.394 Sum_probs=235.5
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPV 125 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~ 125 (419)
.+|.|+.+..|+++|+||||+|++.|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 1 ~~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~--------------- 65 (317)
T cd05478 1 EPLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG--------------- 65 (317)
T ss_pred CccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC---------------
Confidence 368888999999999999999999999999999999998776 5568999999999998753
Q ss_pred CCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------C------CCCcceeeeccCCCCc------hhh
Q 039965 126 PASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------E------DARTTGLMGMNRGSLS------FIT 186 (419)
Q Consensus 126 ~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------~------~~~~~GIlGLg~~~~s------~~~ 186 (419)
|.+.+.|++|+ +.|.+++|+|++|+.+++++ . ....+||||||++..+ +++
T Consensus 66 ---------~~~~~~yg~gs-~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 135 (317)
T cd05478 66 ---------QPLSIQYGTGS-MTGILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFD 135 (317)
T ss_pred ---------cEEEEEECCce-EEEEEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHH
Confidence 58999999995 89999999999999887765 1 1247999999987543 444
Q ss_pred hh------cCCeeEEeecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCc
Q 039965 187 QM------GFPKFSYCISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKS 258 (419)
Q Consensus 187 ql------~~~~Fs~~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~ 258 (419)
|| .+++||+||.+.+ ..|+|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.+..
T Consensus 136 ~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~---------~~w~v~l~~v~v~g~~~~~--- 203 (317)
T cd05478 136 NMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE---------TYWQITVDSVTINGQVVAC--- 203 (317)
T ss_pred HHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC---------cEEEEEeeEEEECCEEEcc---
Confidence 44 3489999998764 5799999999987 8999999999753 4899999999999998753
Q ss_pred ccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEE
Q 039965 259 VFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMF 338 (419)
Q Consensus 259 ~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f 338 (419)
..+..++|||||+++++|++.+++|.+++..... .... +..+|+.. ..+|.|+|+|
T Consensus 204 ------~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~------~~~~-----~~~~C~~~-------~~~P~~~f~f 259 (317)
T cd05478 204 ------SGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN------QNGE-----MVVNCSSI-------SSMPDVVFTI 259 (317)
T ss_pred ------CCCCEEEECCCchhhhCCHHHHHHHHHHhCCccc------cCCc-----EEeCCcCc-------ccCCcEEEEE
Confidence 2345799999999999999999999877643211 1111 13466544 5789999999
Q ss_pred cCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEc
Q 039965 339 SGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAE 405 (419)
Q Consensus 339 ~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 405 (419)
+|+.++|+|++|+.+. ...|++ |+..+. .+.||||++|||++|+|||++++|||||+
T Consensus 260 ~g~~~~i~~~~y~~~~--------~~~C~~~~~~~~~--~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 260 NGVQYPLPPSAYILQD--------QGSCTSGFQSMGL--GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CCEEEEECHHHheecC--------CCEEeEEEEeCCC--CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 9999999999999862 458995 776543 24799999999999999999999999996
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=4.1e-54 Score=412.01 Aligned_cols=287 Identities=25% Similarity=0.411 Sum_probs=229.5
Q ss_pred cccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC------CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCC
Q 039965 54 FHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT------VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPA 127 (419)
Q Consensus 54 ~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~------~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~ 127 (419)
|+.|.+|+++|+||||+|++.|+|||||+++||+|..| |..++.|+|++|+|++..
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~------------------ 62 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKN------------------ 62 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeC------------------
Confidence 45688999999999999999999999999999987765 445789999999999763
Q ss_pred CCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------C------CCCcceeeeccCCCCch------hhhh
Q 039965 128 SCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------E------DARTTGLMGMNRGSLSF------ITQM 188 (419)
Q Consensus 128 ~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------~------~~~~~GIlGLg~~~~s~------~~ql 188 (419)
.|.|.+.|++| .+.|.+++|+|++++.+++++ . ....+||||||++..+. +++|
T Consensus 63 ------~~~~~i~Yg~G-~~~G~~~~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 135 (325)
T cd05490 63 ------GTEFAIQYGSG-SLSGYLSQDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNI 135 (325)
T ss_pred ------CcEEEEEECCc-EEEEEEeeeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHH
Confidence 25899999999 589999999999999887765 1 13569999999976653 3333
Q ss_pred ------cCCeeEEeecCCC---CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCc
Q 039965 189 ------GFPKFSYCISGVD---SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKS 258 (419)
Q Consensus 189 ------~~~~Fs~~l~~~~---~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~ 258 (419)
..++||+||.++. ..|+|+|||+|++ |.|++.|+|+.+. .+|.|++++|+|++....
T Consensus 136 ~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~---------~~w~v~l~~i~vg~~~~~---- 202 (325)
T cd05490 136 MAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK---------AYWQIHMDQVDVGSGLTL---- 202 (325)
T ss_pred HhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc---------eEEEEEeeEEEECCeeee----
Confidence 3489999998642 4799999999987 8999999998753 489999999999986432
Q ss_pred ccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEE
Q 039965 259 VFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMF 338 (419)
Q Consensus 259 ~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f 338 (419)
......++|||||+++++|.+++++|.+++.+. .. .... +..+|+.. ..+|+|+|+|
T Consensus 203 -----~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~-----~~-~~~~-----~~~~C~~~-------~~~P~i~f~f 259 (325)
T cd05490 203 -----CKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV-----PL-IQGE-----YMIDCEKI-------PTLPVISFSL 259 (325)
T ss_pred -----cCCCCEEEECCCCccccCCHHHHHHHHHHhCCc-----cc-cCCC-----EEeccccc-------ccCCCEEEEE
Confidence 123467999999999999999999988776431 11 1111 24466544 5789999999
Q ss_pred cCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCC--CCCceeeeeccceeeeEEEEECCCCEEEEEc
Q 039965 339 SGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDL--LGIEAFVIGHHHQQNLWVEFDLINSRVGFAE 405 (419)
Q Consensus 339 ~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 405 (419)
+|+.++|+|++|+++.. ..+...|++ |+..+. ...+.||||++|||++|+|||++++|||||+
T Consensus 260 gg~~~~l~~~~y~~~~~----~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 260 GGKVYPLTGEDYILKVS----QRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCEEEEEChHHeEEecc----CCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 99999999999999742 123457984 776432 2345799999999999999999999999996
No 6
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=8.2e-54 Score=407.98 Aligned_cols=279 Identities=23% Similarity=0.383 Sum_probs=229.5
Q ss_pred ccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC-----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 039965 51 KLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT-----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPV 125 (419)
Q Consensus 51 ~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~-----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~ 125 (419)
+|.|+.|..|+++|+||||+|+++|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 2 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~--------------- 66 (317)
T cd06098 2 ALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNG--------------- 66 (317)
T ss_pred cccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCC---------------
Confidence 57788999999999999999999999999999999998776 5567899999999998653
Q ss_pred CCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch--------
Q 039965 126 PASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF-------- 184 (419)
Q Consensus 126 ~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~-------- 184 (419)
+.+.+.|++| .+.|.+++|+|++++.+++++ ....++||||||++..+.
T Consensus 67 ---------~~~~i~Yg~G-~~~G~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 136 (317)
T cd06098 67 ---------TSASIQYGTG-SISGFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWY 136 (317)
T ss_pred ---------CEEEEEcCCc-eEEEEEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHH
Confidence 3789999999 589999999999999877765 124579999999976552
Q ss_pred --hhh--hcCCeeEEeecCCC---CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCC
Q 039965 185 --ITQ--MGFPKFSYCISGVD---SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLP 256 (419)
Q Consensus 185 --~~q--l~~~~Fs~~l~~~~---~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~ 256 (419)
.+| +..++||+||.+.. ..|+|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.+...
T Consensus 137 ~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~---------~~w~v~l~~i~v~g~~~~~~ 207 (317)
T cd06098 137 NMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK---------GYWQFEMGDVLIGGKSTGFC 207 (317)
T ss_pred HHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC---------cEEEEEeCeEEECCEEeeec
Confidence 233 44589999998642 5799999999987 8999999999753 48999999999999876542
Q ss_pred CcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEE
Q 039965 257 KSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSL 336 (419)
Q Consensus 257 ~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f 336 (419)
.....++|||||+++++|++++++|. + ..+|+.. ..+|+|+|
T Consensus 208 --------~~~~~aivDTGTs~~~lP~~~~~~i~------------------~-----~~~C~~~-------~~~P~i~f 249 (317)
T cd06098 208 --------AGGCAAIADSGTSLLAGPTTIVTQIN------------------S-----AVDCNSL-------SSMPNVSF 249 (317)
T ss_pred --------CCCcEEEEecCCcceeCCHHHHHhhh------------------c-----cCCcccc-------ccCCcEEE
Confidence 23467999999999999998776542 0 3378765 47899999
Q ss_pred EEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCC--CCCceeeeeccceeeeEEEEECCCCEEEEEc
Q 039965 337 MFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDL--LGIEAFVIGHHHQQNLWVEFDLINSRVGFAE 405 (419)
Q Consensus 337 ~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 405 (419)
+|+|+.++|+|++|+++.. ......|++ |+..+. ..++.||||++|||++|+|||++++|||||+
T Consensus 250 ~f~g~~~~l~~~~yi~~~~----~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 250 TIGGKTFELTPEQYILKVG----EGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EECCEEEEEChHHeEEeec----CCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 9999999999999998741 123458984 775432 2235799999999999999999999999996
No 7
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.3e-53 Score=408.40 Aligned_cols=289 Identities=23% Similarity=0.360 Sum_probs=233.2
Q ss_pred cccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC------CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 039965 52 LSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT------VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPV 125 (419)
Q Consensus 52 l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~------~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~ 125 (419)
|.|+.|..|+++|+||||+|+++|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENG--------------- 65 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECC---------------
Confidence 4567788999999999999999999999999999986554 5568899999999998753
Q ss_pred CCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC------------CCCCcceeeeccCCCCc----------
Q 039965 126 PASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF------------EDARTTGLMGMNRGSLS---------- 183 (419)
Q Consensus 126 ~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~------------~~~~~~GIlGLg~~~~s---------- 183 (419)
|.|.+.|++| .+.|.+++|+|++++..+... .....+||||||++..+
T Consensus 66 ---------~~~~~~Yg~g-~~~G~~~~D~v~~g~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 135 (326)
T cd05487 66 ---------TEFTIHYASG-TVKGFLSQDIVTVGGIPVTQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDN 135 (326)
T ss_pred ---------EEEEEEeCCc-eEEEEEeeeEEEECCEEeeEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHH
Confidence 6899999999 599999999999998765311 12367999999987654
Q ss_pred hhhh--hcCCeeEEeecCCC---CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCC
Q 039965 184 FITQ--MGFPKFSYCISGVD---SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPK 257 (419)
Q Consensus 184 ~~~q--l~~~~Fs~~l~~~~---~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 257 (419)
+.+| +..++||+||.+.+ ..|.|+|||+|++ |.|++.|+|+... .+|+|++++++|+++.+..
T Consensus 136 L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~---------~~w~v~l~~i~vg~~~~~~-- 204 (326)
T cd05487 136 IMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT---------GFWQIQMKGVSVGSSTLLC-- 204 (326)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC---------ceEEEEecEEEECCEEEec--
Confidence 4444 55689999998743 5799999999987 8999999998653 4899999999999987643
Q ss_pred cccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEE
Q 039965 258 SVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLM 337 (419)
Q Consensus 258 ~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~ 337 (419)
..+..++|||||+++++|.+++++|++++.+.. . .. .+..+|+.. ..+|+|+|+
T Consensus 205 -------~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~-----~--~~-----~y~~~C~~~-------~~~P~i~f~ 258 (326)
T cd05487 205 -------EDGCTAVVDTGASFISGPTSSISKLMEALGAKE-----R--LG-----DYVVKCNEV-------PTLPDISFH 258 (326)
T ss_pred -------CCCCEEEECCCccchhCcHHHHHHHHHHhCCcc-----c--CC-----CEEEecccc-------CCCCCEEEE
Confidence 234579999999999999999999987764321 1 11 124466553 578999999
Q ss_pred EcCcEEEEcccceeEEecCccCCCCceEEE-EEEcCCC--CCCceeeeeccceeeeEEEEECCCCEEEEEcC
Q 039965 338 FSGAEMSVSGERLLYRVPGLSRGRDSVYCF-TFGNSDL--LGIEAFVIGHHHQQNLWVEFDLINSRVGFAEV 406 (419)
Q Consensus 338 f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~-~i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 406 (419)
|+|..++|++++|+++.. ...+..|+ +|+..+. ..++.||||++|||++|+|||++++|||||++
T Consensus 259 fgg~~~~v~~~~yi~~~~----~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 259 LGGKEYTLSSSDYVLQDS----DFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred ECCEEEEeCHHHhEEecc----CCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 999999999999999852 12356898 4876542 12347999999999999999999999999986
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.5e-53 Score=406.38 Aligned_cols=280 Identities=24% Similarity=0.385 Sum_probs=226.4
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039965 60 LTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLC 135 (419)
Q Consensus 60 y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~ 135 (419)
|+++|+||||+|+++|+|||||+++||+|..| |..++.|+|++|+|++... |
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~------------------------~ 56 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNG------------------------E 56 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCC------------------------c
Confidence 78999999999999999999999999998776 6678899999999997753 5
Q ss_pred eeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch------hh----h--hcC
Q 039965 136 RVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF------IT----Q--MGF 190 (419)
Q Consensus 136 ~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~------~~----q--l~~ 190 (419)
.|.+.|++| .+.|.+++|+|++++.+++++ ....++||||||++..+. ++ | +..
T Consensus 57 ~~~i~Yg~g-~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~ 135 (316)
T cd05486 57 AFSIQYGTG-SLTGIIGIDQVTVEGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVEL 135 (316)
T ss_pred EEEEEeCCc-EEEEEeeecEEEECCEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCC
Confidence 899999999 689999999999999777655 124679999999877652 23 3 344
Q ss_pred CeeEEeecCCC---CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCCCC
Q 039965 191 PKFSYCISGVD---SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTG 266 (419)
Q Consensus 191 ~~Fs~~l~~~~---~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ 266 (419)
++||+||.++. ..|+|+|||+|++ |.|++.|+|+... .+|.|++++|+|+++.+.. ..
T Consensus 136 ~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~---------~~w~v~l~~i~v~g~~~~~---------~~ 197 (316)
T cd05486 136 PMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ---------GYWQIQLDNIQVGGTVIFC---------SD 197 (316)
T ss_pred CEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc---------eEEEEEeeEEEEecceEec---------CC
Confidence 89999998642 5799999999987 8999999999763 4899999999999987642 23
Q ss_pred CCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEEEEc
Q 039965 267 AGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVS 346 (419)
Q Consensus 267 ~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~i~ 346 (419)
+..++|||||+++++|.+++++|.+++.+. . .+.. +..+|... ..+|+|+|+|+|+.++|+
T Consensus 198 ~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~-----~--~~~~-----~~~~C~~~-------~~~p~i~f~f~g~~~~l~ 258 (316)
T cd05486 198 GCQAIVDTGTSLITGPSGDIKQLQNYIGAT-----A--TDGE-----YGVDCSTL-------SLMPSVTFTINGIPYSLS 258 (316)
T ss_pred CCEEEECCCcchhhcCHHHHHHHHHHhCCc-----c--cCCc-----EEEecccc-------ccCCCEEEEECCEEEEeC
Confidence 467999999999999999999887655321 1 1111 13456543 578999999999999999
Q ss_pred ccceeEEecCccCCCCceEEEE-EEcCCC--CCCceeeeeccceeeeEEEEECCCCEEEEEc
Q 039965 347 GERLLYRVPGLSRGRDSVYCFT-FGNSDL--LGIEAFVIGHHHQQNLWVEFDLINSRVGFAE 405 (419)
Q Consensus 347 ~~~y~~~~~~~~~~~~~~~C~~-i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 405 (419)
|++|++... ..+...|++ |+..+. ...+.||||++|||++|+|||.+++|||||+
T Consensus 259 ~~~y~~~~~----~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 259 PQAYTLEDQ----SDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred HHHeEEecc----cCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 999998731 123568984 776432 2335799999999999999999999999996
No 9
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.1e-52 Score=397.56 Aligned_cols=282 Identities=35% Similarity=0.610 Sum_probs=229.9
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 039965 59 SLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVT 138 (419)
Q Consensus 59 ~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~~~ 138 (419)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c-------------------------------------------~~~~ 37 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC-------------------------------------------CLYQ 37 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-------------------------------------------Ceee
Confidence 499999999999999999999999999998754 2689
Q ss_pred EecCCCCeeeeEEEEEEEEeCCC-CCCCC-------C---CCCcceeeeccCCCCchhhhhcC---CeeEEeecCC--CC
Q 039965 139 LTYADLTSTEGNLATETILIGGP-ARPGF-------E---DARTTGLMGMNRGSLSFITQMGF---PKFSYCISGV--DS 202 (419)
Q Consensus 139 ~~Y~~gs~~~G~~~~D~v~~g~~-~~~~~-------~---~~~~~GIlGLg~~~~s~~~ql~~---~~Fs~~l~~~--~~ 202 (419)
+.|++|+.+.|.+++|+|+|++. .++++ . ....+||||||+...++++|+.. ++||+||.+. ..
T Consensus 38 i~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~~~~ 117 (299)
T cd05472 38 VSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSS 117 (299)
T ss_pred eEeCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCCCCC
Confidence 99999977899999999999987 77765 1 12689999999999999998764 7999999864 35
Q ss_pred CceEEeCCCCccCCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEeccccccccc
Q 039965 203 SGVLLFGDASFAWLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLL 282 (419)
Q Consensus 203 ~G~l~fGg~d~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp 282 (419)
.|+|+|||+|++ .|++.|+|++.... ...+|.|++++|+|+++.+..+... .....++|||||++++||
T Consensus 118 ~G~l~fGg~d~~-~g~l~~~pv~~~~~-----~~~~y~v~l~~i~vg~~~~~~~~~~-----~~~~~~ivDSGTt~~~lp 186 (299)
T cd05472 118 SGYLSFGAAASV-PAGASFTPMLSNPR-----VPTFYYVGLTGISVGGRRLPIPPAS-----FGAGGVIIDSGTVITRLP 186 (299)
T ss_pred CceEEeCCcccc-CCCceECCCccCCC-----CCCeEEEeeEEEEECCEECCCCccc-----cCCCCeEEeCCCcceecC
Confidence 899999999988 89999999987531 1247999999999999988653211 234679999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEc-CcEEEEcccceeEEecCccCCC
Q 039965 283 GEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFS-GAEMSVSGERLLYRVPGLSRGR 361 (419)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~-g~~~~i~~~~y~~~~~~~~~~~ 361 (419)
+++|++|.+++.+++...... .... .+..|+..++.. ...+|+|+|+|+ |.++.|+|++|+++. ..
T Consensus 187 ~~~~~~l~~~l~~~~~~~~~~--~~~~----~~~~C~~~~~~~--~~~~P~i~f~f~~g~~~~l~~~~y~~~~-----~~ 253 (299)
T cd05472 187 PSAYAALRDAFRAAMAAYPRA--PGFS----ILDTCYDLSGFR--SVSVPTVSLHFQGGADVELDASGVLYPV-----DD 253 (299)
T ss_pred HHHHHHHHHHHHHHhccCCCC--CCCC----CCCccCcCCCCc--CCccCCEEEEECCCCEEEeCcccEEEEe-----cC
Confidence 999999999998876432111 1110 123598776543 257999999998 899999999999843 13
Q ss_pred CceEEEEEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCCC
Q 039965 362 DSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRC 408 (419)
Q Consensus 362 ~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c 408 (419)
.+..|+++..... +.+.||||+.|||++|+|||++++|||||+++|
T Consensus 254 ~~~~C~~~~~~~~-~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 254 SSQVCLAFAGTSD-DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCEEEEEeCCCC-CCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 4568998776542 234799999999999999999999999999999
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=6.3e-53 Score=402.63 Aligned_cols=282 Identities=24% Similarity=0.406 Sum_probs=229.1
Q ss_pred ceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 039965 57 NVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPK 132 (419)
Q Consensus 57 ~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~ 132 (419)
|..|+++|.||||+|++.|+|||||+++||+|..| |..++.|||++|+|++...
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~---------------------- 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNG---------------------- 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECC----------------------
Confidence 45799999999999999999999999999998776 5567899999999998653
Q ss_pred CCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------C------CCCcceeeeccCCCC------chhhhhc----
Q 039965 133 GLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------E------DARTTGLMGMNRGSL------SFITQMG---- 189 (419)
Q Consensus 133 ~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------~------~~~~~GIlGLg~~~~------s~~~ql~---- 189 (419)
|.|++.|++| ++.|.+++|+|++|+.+++++ . ....+||||||++.. ++++||.
T Consensus 59 --~~~~~~Yg~G-s~~G~~~~D~i~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~ 135 (318)
T cd05477 59 --ETFSLQYGSG-SLTGIFGYDTVTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNL 135 (318)
T ss_pred --cEEEEEECCc-EEEEEEEeeEEEECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCC
Confidence 6899999999 589999999999999888776 1 134699999998643 3555543
Q ss_pred --CCeeEEeecCCC--CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCC
Q 039965 190 --FPKFSYCISGVD--SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDH 264 (419)
Q Consensus 190 --~~~Fs~~l~~~~--~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~ 264 (419)
.++||+||.+.+ ..|.|+|||+|++ |.|++.|+|+... .+|.|++++|+|+++.+...
T Consensus 136 i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~---------~~w~v~l~~i~v~g~~~~~~-------- 198 (318)
T cd05477 136 LQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE---------TYWQIGIQGFQINGQATGWC-------- 198 (318)
T ss_pred cCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc---------eEEEEEeeEEEECCEEeccc--------
Confidence 489999998753 5799999999987 8999999999753 48999999999999887432
Q ss_pred CCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEEE
Q 039965 265 TGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMS 344 (419)
Q Consensus 265 ~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~ 344 (419)
..+..++|||||+++++|.+++++|++++.+.... .. .+..+|+.. ..+|+|+|+|+|+++.
T Consensus 199 ~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~------~~-----~~~~~C~~~-------~~~p~l~~~f~g~~~~ 260 (318)
T cd05477 199 SQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQ------YG-----QYVVNCNNI-------QNLPTLTFTINGVSFP 260 (318)
T ss_pred CCCceeeECCCCccEECCHHHHHHHHHHhCCcccc------CC-----CEEEeCCcc-------ccCCcEEEEECCEEEE
Confidence 23457999999999999999999998877543210 11 113355543 5789999999999999
Q ss_pred EcccceeEEecCccCCCCceEEE-EEEcCCC---CCCceeeeeccceeeeEEEEECCCCEEEEEcC
Q 039965 345 VSGERLLYRVPGLSRGRDSVYCF-TFGNSDL---LGIEAFVIGHHHQQNLWVEFDLINSRVGFAEV 406 (419)
Q Consensus 345 i~~~~y~~~~~~~~~~~~~~~C~-~i~~~~~---~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 406 (419)
|++++|+.+. ...|+ +|++... .+.+.||||++|||++|+|||++++|||||++
T Consensus 261 v~~~~y~~~~--------~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 261 LPPSAYILQN--------NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ECHHHeEecC--------CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 9999999862 34797 5875421 23347999999999999999999999999985
No 11
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=8.3e-53 Score=412.82 Aligned_cols=291 Identities=22% Similarity=0.330 Sum_probs=232.9
Q ss_pred CcccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 039965 47 ATANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQD 122 (419)
Q Consensus 47 ~~~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~ 122 (419)
....+|.++.|.+|+++|+||||+|++.|+|||||+++||+|.+| |..++.|||++|+|++...
T Consensus 127 ~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~------------ 194 (453)
T PTZ00147 127 FDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG------------ 194 (453)
T ss_pred CCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC------------
Confidence 345678899999999999999999999999999999999998776 6678999999999998753
Q ss_pred CCCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC--------------CCCCcceeeeccCCCCch----
Q 039965 123 LPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF--------------EDARTTGLMGMNRGSLSF---- 184 (419)
Q Consensus 123 ~~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~--------------~~~~~~GIlGLg~~~~s~---- 184 (419)
|.+.+.|++| .+.|.+++|+|++|+.+++.+ ....+|||||||++..+.
T Consensus 195 ------------~~f~i~Yg~G-svsG~~~~DtVtiG~~~v~~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~ 261 (453)
T PTZ00147 195 ------------TKVEMNYVSG-TVSGFFSKDLVTIGNLSVPYKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVD 261 (453)
T ss_pred ------------CEEEEEeCCC-CEEEEEEEEEEEECCEEEEEEEEEEEeccCcccccccccccceecccCCccccccCC
Confidence 5899999999 699999999999999776532 123579999999987652
Q ss_pred --hhh------hcCCeeEEeecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEee
Q 039965 185 --ITQ------MGFPKFSYCISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLN 254 (419)
Q Consensus 185 --~~q------l~~~~Fs~~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~ 254 (419)
+.+ +..++||+||++.+ ..|.|+|||+|++ |.|++.|+|+... .+|.|.++ +.+++...
T Consensus 262 p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~---------~~W~V~l~-~~vg~~~~- 330 (453)
T PTZ00147 262 PYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD---------LYWQVDLD-VHFGNVSS- 330 (453)
T ss_pred CHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC---------ceEEEEEE-EEECCEec-
Confidence 223 33489999998643 6799999999987 8999999999643 48999998 47776432
Q ss_pred CCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeE
Q 039965 255 LPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIV 334 (419)
Q Consensus 255 ~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i 334 (419)
....++|||||+++++|+++++++.+++.+. .....+. +..+|+. ..+|+|
T Consensus 331 -----------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~-----~~~~~~~-----y~~~C~~--------~~lP~~ 381 (453)
T PTZ00147 331 -----------EKANVIVDSGTSVITVPTEFLNKFVESLDVF-----KVPFLPL-----YVTTCNN--------TKLPTL 381 (453)
T ss_pred -----------CceeEEECCCCchhcCCHHHHHHHHHHhCCe-----ecCCCCe-----EEEeCCC--------CCCCeE
Confidence 2357999999999999999999987766321 1111111 2346653 368999
Q ss_pred EEEEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 335 SLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 335 ~f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
+|.|+|..++|+|++|+.+.. ......|++ |++.+.. .+.||||++|||++|+|||.+++|||||+++
T Consensus 382 ~f~f~g~~~~L~p~~yi~~~~----~~~~~~C~~~i~~~~~~-~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 382 EFRSPNKVYTLEPEYYLQPIE----DIGSALCMLNIIPIDLE-KNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEECCEEEEECHHHheeccc----cCCCcEEEEEEEECCCC-CCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 999999999999999997631 123457984 8775432 2479999999999999999999999999986
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=6.6e-53 Score=402.47 Aligned_cols=285 Identities=24% Similarity=0.380 Sum_probs=231.5
Q ss_pred ccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCC
Q 039965 51 KLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVP 126 (419)
Q Consensus 51 ~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~ 126 (419)
+|.|+.|..|+++|+||||+|++.|+|||||+++||+|.+| |..++.|++++|+|++...
T Consensus 2 ~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~---------------- 65 (320)
T cd05488 2 PLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANG---------------- 65 (320)
T ss_pred cccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCC----------------
Confidence 57788899999999999999999999999999999998876 5667899999999987643
Q ss_pred CCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------C------CCCcceeeeccCCCCchhh-------
Q 039965 127 ASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------E------DARTTGLMGMNRGSLSFIT------- 186 (419)
Q Consensus 127 ~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------~------~~~~~GIlGLg~~~~s~~~------- 186 (419)
|.+.+.|++| .+.|.+++|+|++++.+++++ . ....+||||||++..+...
T Consensus 66 --------~~~~~~y~~g-~~~G~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 136 (320)
T cd05488 66 --------TEFKIQYGSG-SLEGFVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYN 136 (320)
T ss_pred --------CEEEEEECCc-eEEEEEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHH
Confidence 6899999999 589999999999999887765 1 2356999999998765322
Q ss_pred ---h--hcCCeeEEeecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcc
Q 039965 187 ---Q--MGFPKFSYCISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSV 259 (419)
Q Consensus 187 ---q--l~~~~Fs~~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 259 (419)
| +..+.||+||.+.+ ..|.|+|||+|++ |.|++.|+|++.. .+|.|++++|+|+++.+...
T Consensus 137 l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~w~v~l~~i~vg~~~~~~~--- 204 (320)
T cd05488 137 MINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK---------AYWEVELEKIGLGDEELELE--- 204 (320)
T ss_pred HHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC---------cEEEEEeCeEEECCEEeccC---
Confidence 2 34589999998753 6899999999987 8999999999853 47999999999999877532
Q ss_pred cccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEc
Q 039965 260 FIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFS 339 (419)
Q Consensus 260 ~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~ 339 (419)
+..++|||||+++++|++++++|.+++.+.. . .... +..+|+.. ..+|.|+|+|+
T Consensus 205 -------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~-----~-~~~~-----~~~~C~~~-------~~~P~i~f~f~ 259 (320)
T cd05488 205 -------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKK-----S-WNGQ-----YTVDCSKV-------DSLPDLTFNFD 259 (320)
T ss_pred -------CCeEEEcCCcccccCCHHHHHHHHHHhCCcc-----c-cCCc-----EEeecccc-------ccCCCEEEEEC
Confidence 3569999999999999999998877653211 0 1111 12345443 57899999999
Q ss_pred CcEEEEcccceeEEecCccCCCCceEEEE-EEcCCC--CCCceeeeeccceeeeEEEEECCCCEEEEEc
Q 039965 340 GAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDL--LGIEAFVIGHHHQQNLWVEFDLINSRVGFAE 405 (419)
Q Consensus 340 g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 405 (419)
|+++.|+|++|+++. ...|++ +...+. ...+.||||++|||++|+|||.+++|||||+
T Consensus 260 g~~~~i~~~~y~~~~--------~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 260 GYNFTLGPFDYTLEV--------SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CEEEEECHHHheecC--------CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 999999999999862 236985 665432 1234799999999999999999999999996
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=6.2e-53 Score=403.76 Aligned_cols=290 Identities=26% Similarity=0.444 Sum_probs=233.6
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC------CCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT------VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDL 123 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~------~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~ 123 (419)
.+|.|+.+..|+++|+||||+|+++|+|||||+++||+|.+| |..++.|+|++|+|++...
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~------------- 68 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNG------------- 68 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECC-------------
Confidence 468899999999999999999999999999999999998876 4447899999999998753
Q ss_pred CCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch------
Q 039965 124 PVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF------ 184 (419)
Q Consensus 124 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~------ 184 (419)
|.|.+.|++| .+.|.+++|+|++++.+++++ .....+||||||++..+.
T Consensus 69 -----------~~~~i~Y~~g-~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~ 136 (329)
T cd05485 69 -----------TEFAIQYGSG-SLSGFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPV 136 (329)
T ss_pred -----------eEEEEEECCc-eEEEEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCH
Confidence 5899999999 589999999999999887665 113569999999987653
Q ss_pred hhh------hcCCeeEEeecCCC---CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEee
Q 039965 185 ITQ------MGFPKFSYCISGVD---SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLN 254 (419)
Q Consensus 185 ~~q------l~~~~Fs~~l~~~~---~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~ 254 (419)
+.| +..++||+||.+.. ..|+|+|||+|++ |.|++.|+|+... .+|.|++++++++++.+.
T Consensus 137 ~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~~~v~~~~i~v~~~~~~ 207 (329)
T cd05485 137 FYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK---------GYWQFKMDSVSVGEGEFC 207 (329)
T ss_pred HHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc---------eEEEEEeeEEEECCeeec
Confidence 223 33489999998643 4799999999987 8999999999753 589999999999998753
Q ss_pred CCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeE
Q 039965 255 LPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIV 334 (419)
Q Consensus 255 ~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i 334 (419)
..+..++|||||+++++|++++++|.+++... ...... +..+|+.. ..+|+|
T Consensus 208 ----------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~------~~~~~~-----~~~~C~~~-------~~~p~i 259 (329)
T cd05485 208 ----------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK------PIIGGE-----YMVNCSAI-------PSLPDI 259 (329)
T ss_pred ----------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc------cccCCc-----EEEecccc-------ccCCcE
Confidence 23457999999999999999999987766431 111111 23455443 568999
Q ss_pred EEEEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCC--CCCceeeeeccceeeeEEEEECCCCEEEEEc
Q 039965 335 SLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDL--LGIEAFVIGHHHQQNLWVEFDLINSRVGFAE 405 (419)
Q Consensus 335 ~f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 405 (419)
+|+|+|+.+.|+|++|+++.. ..+...|+. |+..+. ...+.||||++|||++|+|||++++|||||+
T Consensus 260 ~f~fgg~~~~i~~~~yi~~~~----~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 260 TFVLGGKSFSLTGKDYVLKVT----QMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EEEECCEEeEEChHHeEEEec----CCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 999999999999999999852 123468985 775431 2234799999999999999999999999985
No 14
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.4e-52 Score=404.39 Aligned_cols=303 Identities=25% Similarity=0.374 Sum_probs=232.2
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 039965 59 SLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVT 138 (419)
Q Consensus 59 ~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~~~ 138 (419)
.|+++|+||||+|++.|+|||||+++||+|.+||+.++.|+|++|+|++... |.|+
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~~~~f~~~~SsT~~~~~------------------------~~~~ 58 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFIHTYFHRELSSTYRDLG------------------------KGVT 58 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCCccccccCCchhCcCcccCC------------------------ceEE
Confidence 4999999999999999999999999999999998889999999999998764 5899
Q ss_pred EecCCCCeeeeEEEEEEEEeCCCC---CC-CC-----------CCCCcceeeeccCCCC------------chhhhhcC-
Q 039965 139 LTYADLTSTEGNLATETILIGGPA---RP-GF-----------EDARTTGLMGMNRGSL------------SFITQMGF- 190 (419)
Q Consensus 139 ~~Y~~gs~~~G~~~~D~v~~g~~~---~~-~~-----------~~~~~~GIlGLg~~~~------------s~~~ql~~- 190 (419)
+.|++| .+.|.+++|+|++++.. +. .+ .....+||||||++.+ ++++|...
T Consensus 59 i~Yg~G-s~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~ 137 (364)
T cd05473 59 VPYTQG-SWEGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIP 137 (364)
T ss_pred EEECcc-eEEEEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCCc
Confidence 999999 68999999999998531 11 00 1125799999998865 34455333
Q ss_pred CeeEEeecCC----------CCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcc
Q 039965 191 PKFSYCISGV----------DSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSV 259 (419)
Q Consensus 191 ~~Fs~~l~~~----------~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 259 (419)
++||++|... ...|.|+|||+|++ |.|++.|+|+... .+|.|++++|+|+++.+..+...
T Consensus 138 ~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~---------~~~~v~l~~i~vg~~~~~~~~~~ 208 (364)
T cd05473 138 DVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE---------WYYEVIILKLEVGGQSLNLDCKE 208 (364)
T ss_pred cceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc---------eeEEEEEEEEEECCEeccccccc
Confidence 6899988521 14799999999987 8999999999864 47999999999999988654322
Q ss_pred cccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEc
Q 039965 260 FIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFS 339 (419)
Q Consensus 260 ~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~ 339 (419)
+ ....+||||||++++||++++++|.+++.++.... ...+..+ .....+|+...... ...+|+|+|+|+
T Consensus 209 ~-----~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~--~~~~~~~--~~~~~~C~~~~~~~--~~~~P~i~~~f~ 277 (364)
T cd05473 209 Y-----NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIE--DFPDGFW--LGSQLACWQKGTTP--WEIFPKISIYLR 277 (364)
T ss_pred c-----cCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccc--cCCcccc--CcceeecccccCch--HhhCCcEEEEEc
Confidence 1 12469999999999999999999999998764321 1111100 11234787653210 136899999997
Q ss_pred C------cEEEEcccceeEEecCccCCCCceEEEEEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCCCCcc
Q 039965 340 G------AEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDIA 411 (419)
Q Consensus 340 g------~~~~i~~~~y~~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~~~ 411 (419)
| .++.|+|++|+.... .......|+++..... .+.||||+.|||++|+|||.+++|||||+++|...
T Consensus 278 g~~~~~~~~l~l~p~~Y~~~~~---~~~~~~~C~~~~~~~~--~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 278 DENSSQSFRITILPQLYLRPVE---DHGTQLDCYKFAISQS--TNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred cCCCCceEEEEECHHHhhhhhc---cCCCcceeeEEeeecC--CCceEEeeeeEcceEEEEECCCCEEeeEecccccc
Confidence 5 368999999998641 1123457985433221 23699999999999999999999999999999764
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3.4e-52 Score=407.61 Aligned_cols=291 Identities=20% Similarity=0.334 Sum_probs=231.0
Q ss_pred CcccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 039965 47 ATANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQD 122 (419)
Q Consensus 47 ~~~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~ 122 (419)
....+|.++.+.+|+++|+||||+|++.|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 126 ~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~------------ 193 (450)
T PTZ00013 126 NDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDG------------ 193 (450)
T ss_pred CCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCC------------
Confidence 344578888899999999999999999999999999999998876 6668899999999997753
Q ss_pred CCCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC--------------CCCCcceeeeccCCCCc-----
Q 039965 123 LPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF--------------EDARTTGLMGMNRGSLS----- 183 (419)
Q Consensus 123 ~~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~--------------~~~~~~GIlGLg~~~~s----- 183 (419)
|.+.+.|++| .+.|.+++|+|++|+.+++.+ ....++||||||++..+
T Consensus 194 ------------~~~~i~YG~G-sv~G~~~~Dtv~iG~~~~~~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~ 260 (450)
T PTZ00013 194 ------------TKVDITYGSG-TVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSID 260 (450)
T ss_pred ------------cEEEEEECCc-eEEEEEEEEEEEECCEEEccEEEEEEeccccccceecccccceecccCCccccccCC
Confidence 5899999999 599999999999998776533 12357999999998765
Q ss_pred -hhhh------hcCCeeEEeecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEee
Q 039965 184 -FITQ------MGFPKFSYCISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLN 254 (419)
Q Consensus 184 -~~~q------l~~~~Fs~~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~ 254 (419)
++.| +..++||+||++.+ ..|.|+|||+|++ |.|++.|+|+... .+|.|.++ +.++....
T Consensus 261 p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~---------~yW~I~l~-v~~G~~~~- 329 (450)
T PTZ00013 261 PIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD---------LYWQIDLD-VHFGKQTM- 329 (450)
T ss_pred CHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC---------ceEEEEEE-EEECceec-
Confidence 2333 33489999998653 6899999999987 8999999999643 48999998 66664432
Q ss_pred CCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeE
Q 039965 255 LPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIV 334 (419)
Q Consensus 255 ~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i 334 (419)
....+++||||+++++|+++++++.+++... .....+. +..+|+. ..+|+|
T Consensus 330 -----------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~-----~~~~~~~-----y~~~C~~--------~~lP~i 380 (450)
T PTZ00013 330 -----------QKANVIVDSGTTTITAPSEFLNKFFANLNVI-----KVPFLPF-----YVTTCDN--------KEMPTL 380 (450)
T ss_pred -----------cccceEECCCCccccCCHHHHHHHHHHhCCe-----ecCCCCe-----EEeecCC--------CCCCeE
Confidence 2356999999999999999998887665321 1111111 2345643 368999
Q ss_pred EEEEcCcEEEEcccceeEEecCccCCCCceEEE-EEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 335 SLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCF-TFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 335 ~f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~-~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
+|.|+|.+++|+|++|+.+.. ..++..|+ ++++.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 381 ~F~~~g~~~~L~p~~Yi~~~~----~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 381 EFKSANNTYTLEPEYYMNPLL----DVDDTLCMITMLPVDI-DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEEECCEEEEECHHHheehhc----cCCCCeeEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 999999999999999987531 12345898 4776543 23479999999999999999999999999976
No 16
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=6.1e-52 Score=396.67 Aligned_cols=278 Identities=23% Similarity=0.375 Sum_probs=224.8
Q ss_pred eeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCC----CCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Q 039965 58 VSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTV----SFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKG 133 (419)
Q Consensus 58 ~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~----~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~ 133 (419)
+.|+++|.||||+|++.|+|||||+++||+|.+|. +.++.|+|++|+|++.+.|.+..|.. ...|. ++
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-------~~~~~-~~ 73 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-------CLSCL-NN 73 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc-------cCcCC-CC
Confidence 36999999999999999999999999999998763 23578999999999999999999953 12343 36
Q ss_pred CCeeEEecCCCCeeeeEEEEEEEEeCCCCCCC-------C------------CCCCcceeeeccCCCCc--------hhh
Q 039965 134 LCRVTLTYADLTSTEGNLATETILIGGPARPG-------F------------EDARTTGLMGMNRGSLS--------FIT 186 (419)
Q Consensus 134 ~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~-------~------------~~~~~~GIlGLg~~~~s--------~~~ 186 (419)
.|.|.+.|++|+.+.|.+++|+|++++..+++ + .....+||||||+...+ +.+
T Consensus 74 ~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~ 153 (326)
T cd06096 74 KCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFT 153 (326)
T ss_pred cCcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHH
Confidence 79999999999779999999999999876531 1 12357999999998643 122
Q ss_pred h--hc--CCeeEEeecCCCCCceEEeCCCCcc-CC----------CCcccccccccCCCCCCCCCeeEEEEeeeEEECCE
Q 039965 187 Q--MG--FPKFSYCISGVDSSGVLLFGDASFA-WL----------KPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSK 251 (419)
Q Consensus 187 q--l~--~~~Fs~~l~~~~~~G~l~fGg~d~~-~~----------g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~ 251 (419)
| .. .++||+||++ ..|.|+|||+|+. +. +++.|+|+... .+|.|++++|+|+++
T Consensus 154 ~~~~~~~~~~FS~~l~~--~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~---------~~y~v~l~~i~vg~~ 222 (326)
T cd06096 154 KRPKLKKDKIFSICLSE--DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK---------YYYYVKLEGLSVYGT 222 (326)
T ss_pred hcccccCCceEEEEEcC--CCeEEEECccChhhhcccccccccccCCceEEeccCC---------ceEEEEEEEEEEccc
Confidence 3 12 2899999985 3799999999987 65 78999999864 379999999999988
Q ss_pred EeeCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCC
Q 039965 252 VLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRL 331 (419)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 331 (419)
..... ......++|||||++++||+++|++|.++ +
T Consensus 223 ~~~~~-------~~~~~~aivDSGTs~~~lp~~~~~~l~~~--------------------------------------~ 257 (326)
T cd06096 223 TSNSG-------NTKGLGMLVDSGSTLSHFPEDLYNKINNF--------------------------------------F 257 (326)
T ss_pred cccee-------cccCCCEEEeCCCCcccCCHHHHHHHHhh--------------------------------------c
Confidence 61100 13456899999999999999999887432 2
Q ss_pred CeEEEEEc-CcEEEEcccceeEEecCccCCCCceEEEEEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCCCC
Q 039965 332 PIVSLMFS-GAEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCD 409 (419)
Q Consensus 332 P~i~f~f~-g~~~~i~~~~y~~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~ 409 (419)
|+|+|.|+ |++++++|++|+++. ....+|+++.... +.||||++|||++|+|||++++|||||+++|-
T Consensus 258 P~i~~~f~~g~~~~i~p~~y~~~~------~~~~c~~~~~~~~----~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 258 PTITIIFENNLKIDWKPSSYLYKK------ESFWCKGGEKSVS----NKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred CcEEEEEcCCcEEEECHHHhcccc------CCceEEEEEecCC----CceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 79999999 899999999999874 2333555555432 36999999999999999999999999999993
No 17
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.1e-49 Score=383.62 Aligned_cols=314 Identities=26% Similarity=0.456 Sum_probs=244.5
Q ss_pred eCCCCce-EEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC-------CCCCCCCCCCCee
Q 039965 66 LGSPPQD-VTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLP-------VPASCDPKGLCRV 137 (419)
Q Consensus 66 iGtP~Q~-~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~-------~~~~c~~~~~~~~ 137 (419)
+|||-.+ +.|++||||+++|++|.+ .+|+||+.+.|+++.|+...+... ....|.. +.|.|
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~----------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~-~~C~y 70 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA----------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN-NTCTA 70 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC----------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC-CcCee
Confidence 5788777 999999999999999974 568899999999999986543211 0124533 46988
Q ss_pred EEe-cCCCCeeeeEEEEEEEEeCCC--------CCCCC------------CCCCcceeeeccCCCCchhhhhcC-----C
Q 039965 138 TLT-YADLTSTEGNLATETILIGGP--------ARPGF------------EDARTTGLMGMNRGSLSFITQMGF-----P 191 (419)
Q Consensus 138 ~~~-Y~~gs~~~G~~~~D~v~~g~~--------~~~~~------------~~~~~~GIlGLg~~~~s~~~ql~~-----~ 191 (419)
... |++|+...|.+++|+|+|+.. +++++ ....+|||||||++++|++.|+.. +
T Consensus 71 ~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~ 150 (362)
T cd05489 71 HPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVAR 150 (362)
T ss_pred EccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCc
Confidence 765 888989999999999999742 45554 112479999999999999999765 7
Q ss_pred eeEEeecCCC-CCceEEeCCCCcc-C------CCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccC
Q 039965 192 KFSYCISGVD-SSGVLLFGDASFA-W------LKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPD 263 (419)
Q Consensus 192 ~Fs~~l~~~~-~~G~l~fGg~d~~-~------~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 263 (419)
+||+||.+.. ..|.|+||+.++. + .+.+.|+|++.+... ..+|.|+|++|+||++.+.++...+..+
T Consensus 151 ~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~-----~~~Y~v~l~~IsVg~~~l~~~~~~~~~~ 225 (362)
T cd05489 151 KFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRK-----SGEYYIGVTSIAVNGHAVPLNPTLSAND 225 (362)
T ss_pred ceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCC-----CCceEEEEEEEEECCEECCCCchhcccc
Confidence 8999998642 5899999999865 4 378999999976321 2479999999999999998876655444
Q ss_pred CCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCC--CCCCCCCeEEEEEcC-
Q 039965 264 HTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTG--PSLPRLPIVSLMFSG- 340 (419)
Q Consensus 264 ~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~--~~~~~~P~i~f~f~g- 340 (419)
..+..++||||||++++||+++|++|.+++.+++........... ....||...... .....+|+|+|+|+|
T Consensus 226 ~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~-----~~~~C~~~~~~~~~~~~~~~P~it~~f~g~ 300 (362)
T cd05489 226 RLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAV-----FPELCYPASALGNTRLGYAVPAIDLVLDGG 300 (362)
T ss_pred ccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCC-----CcCccccCCCcCCcccccccceEEEEEeCC
Confidence 455678999999999999999999999999988764322111111 125898753211 002579999999986
Q ss_pred -cEEEEcccceeEEecCccCCCCceEEEEEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcC
Q 039965 341 -AEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEV 406 (419)
Q Consensus 341 -~~~~i~~~~y~~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 406 (419)
+++.|+|++|+++. .++..|++|...+....+.||||+.|||++|++||.+++|||||+.
T Consensus 301 g~~~~l~~~ny~~~~------~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 301 GVNWTIFGANSMVQV------KGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CeEEEEcCCceEEEc------CCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999999985 3456899988765433457999999999999999999999999974
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.9e-49 Score=368.75 Aligned_cols=246 Identities=40% Similarity=0.714 Sum_probs=211.0
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 039965 59 SLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVT 138 (419)
Q Consensus 59 ~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~~~ 138 (419)
.|+++|+||||+|+++|+|||||+++||+| | .|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~----------------------~------------------------~~~ 34 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC----------------------C------------------------SYE 34 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC----------------------C------------------------ceE
Confidence 399999999999999999999999999986 1 578
Q ss_pred EecCCCCeeeeEEEEEEEEeCCC--CCCCC-----------CCCCcceeeeccCCCCchhhhhcCC--eeEEeecCC---
Q 039965 139 LTYADLTSTEGNLATETILIGGP--ARPGF-----------EDARTTGLMGMNRGSLSFITQMGFP--KFSYCISGV--- 200 (419)
Q Consensus 139 ~~Y~~gs~~~G~~~~D~v~~g~~--~~~~~-----------~~~~~~GIlGLg~~~~s~~~ql~~~--~Fs~~l~~~--- 200 (419)
+.|++|+.+.|.+++|+|++++. .++++ .....+||||||+...++++|+... +||+||.+.
T Consensus 35 ~~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~~l~~~~~~ 114 (265)
T cd05476 35 YSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCLVPHDDT 114 (265)
T ss_pred eEeCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCeeEEEccCCCCC
Confidence 99999889999999999999998 67665 1246899999999999999999875 999999873
Q ss_pred CCCceEEeCCCCccCCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEeccccccc
Q 039965 201 DSSGVLLFGDASFAWLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTF 280 (419)
Q Consensus 201 ~~~G~l~fGg~d~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~ 280 (419)
+..|+|+||++|+++.+++.|+|++..+. ...+|.|++++|+|+++.+.++...+.........++|||||++++
T Consensus 115 ~~~G~l~fGg~d~~~~~~l~~~p~~~~~~-----~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~ 189 (265)
T cd05476 115 GGSSPLILGDAADLGGSGVVYTPLVKNPA-----NPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTY 189 (265)
T ss_pred CCCCeEEECCcccccCCCceEeecccCCC-----CCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceE
Confidence 46899999999988999999999987521 1257999999999999988765443332234567899999999999
Q ss_pred ccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEc-CcEEEEcccceeEEecCccC
Q 039965 281 LLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFS-GAEMSVSGERLLYRVPGLSR 359 (419)
Q Consensus 281 lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~-g~~~~i~~~~y~~~~~~~~~ 359 (419)
||++++ |+|+|+|+ |.++.+++++|+++.
T Consensus 190 lp~~~~---------------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~----- 219 (265)
T cd05476 190 LPDPAY---------------------------------------------PDLTLHFDGGADLELPPENYFVDV----- 219 (265)
T ss_pred cCcccc---------------------------------------------CCEEEEECCCCEEEeCcccEEEEC-----
Confidence 998764 68999999 899999999999964
Q ss_pred CCCceEEEEEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCCC
Q 039965 360 GRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRC 408 (419)
Q Consensus 360 ~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c 408 (419)
..+..|+++.... ..+.||||++|||++|++||.+++|||||+++|
T Consensus 220 -~~~~~C~~~~~~~--~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 220 -GEGVVCLAILSSS--SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred -CCCCEEEEEecCC--CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 4567999877653 235799999999999999999999999999999
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=3.4e-48 Score=362.97 Aligned_cols=247 Identities=24% Similarity=0.385 Sum_probs=200.4
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039965 60 LTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLC 135 (419)
Q Consensus 60 y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~ 135 (419)
|+++|+||||+|++.|+|||||+++||+|.+| |..+..|++++|+|++... .|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~-----------------------~~ 57 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP-----------------------GA 57 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC-----------------------Cc
Confidence 78999999999999999999999999998876 2346779999999998652 36
Q ss_pred eeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch---------hh----hhc
Q 039965 136 RVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF---------IT----QMG 189 (419)
Q Consensus 136 ~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~---------~~----ql~ 189 (419)
.+.+.|++|+.+.|.+++|+|++++.+++++ .....+||||||++..+. .+ |..
T Consensus 58 ~~~i~Y~~G~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~ 137 (278)
T cd06097 58 TWSISYGDGSSASGIVYTDTVSIGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD 137 (278)
T ss_pred EEEEEeCCCCeEEEEEEEEEEEECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc
Confidence 8999999997799999999999999887765 124789999999876542 22 333
Q ss_pred CCeeEEeecCCCCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCCCCCC
Q 039965 190 FPKFSYCISGVDSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAG 268 (419)
Q Consensus 190 ~~~Fs~~l~~~~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 268 (419)
.+.||+||.+ +..|+|+|||+|++ |.|++.|+|+.... .+|.|++++|+|+++.... ..+.
T Consensus 138 ~~~Fs~~l~~-~~~G~l~fGg~D~~~~~g~l~~~pi~~~~--------~~w~v~l~~i~v~~~~~~~---------~~~~ 199 (278)
T cd06097 138 APLFTADLRK-AAPGFYTFGYIDESKYKGEISWTPVDNSS--------GFWQFTSTSYTVGGDAPWS---------RSGF 199 (278)
T ss_pred CceEEEEecC-CCCcEEEEeccChHHcCCceEEEEccCCC--------cEEEEEEeeEEECCcceee---------cCCc
Confidence 4799999986 46899999999987 89999999998642 4899999999999874321 2356
Q ss_pred cEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEEEEccc
Q 039965 269 QTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGE 348 (419)
Q Consensus 269 ~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~i~~~ 348 (419)
.++|||||+++++|.+++++|.+++. +... +. ...+|.++|. ..+|+|+|+|
T Consensus 200 ~~iiDSGTs~~~lP~~~~~~l~~~l~----g~~~---~~-------~~~~~~~~C~----~~~P~i~f~~---------- 251 (278)
T cd06097 200 SAIADTGTTLILLPDAIVEAYYSQVP----GAYY---DS-------EYGGWVFPCD----TTLPDLSFAV---------- 251 (278)
T ss_pred eEEeecCCchhcCCHHHHHHHHHhCc----CCcc---cC-------CCCEEEEECC----CCCCCEEEEE----------
Confidence 79999999999999999988876652 1110 00 1134556664 2389999999
Q ss_pred ceeEEecCccCCCCceEEEEEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEc
Q 039965 349 RLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAE 405 (419)
Q Consensus 349 ~y~~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 405 (419)
.||||++|||++|+|||++++|||||+
T Consensus 252 ------------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ------------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ------------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 499999999999999999999999996
No 20
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=4.9e-47 Score=353.77 Aligned_cols=244 Identities=25% Similarity=0.475 Sum_probs=198.4
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 039965 59 SLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVT 138 (419)
Q Consensus 59 ~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~~~ 138 (419)
+|+++|.||||+|++.|+|||||+++||+|...|. . | .|.|.
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~----------------~-----c-----------------~c~~~ 43 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT----------------G-----C-----------------QCDYE 43 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC----------------C-----C-----------------cCccE
Confidence 59999999999999999999999999999852111 1 1 15799
Q ss_pred EecCCCCeeeeEEEEEEEEeCC----CCCCCC--------------CCCCcceeeeccCCCCchhhhhcC-----CeeEE
Q 039965 139 LTYADLTSTEGNLATETILIGG----PARPGF--------------EDARTTGLMGMNRGSLSFITQMGF-----PKFSY 195 (419)
Q Consensus 139 ~~Y~~gs~~~G~~~~D~v~~g~----~~~~~~--------------~~~~~~GIlGLg~~~~s~~~ql~~-----~~Fs~ 195 (419)
+.|++++.+.|.+++|+|+++. ..++++ .....+||||||++..++++|+.. ++||+
T Consensus 44 i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 123 (273)
T cd05475 44 IEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGH 123 (273)
T ss_pred eEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEE
Confidence 9999888999999999999963 233433 123679999999999999999764 68999
Q ss_pred eecCCCCCceEEeCCCCccCCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEecc
Q 039965 196 CISGVDSSGVLLFGDASFAWLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSG 275 (419)
Q Consensus 196 ~l~~~~~~G~l~fGg~d~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSG 275 (419)
||.+ +..|.|+||+. ..+.+++.|+|+.+.+. ..+|.|++.+|+|+++... .....++||||
T Consensus 124 ~l~~-~~~g~l~~G~~-~~~~g~i~ytpl~~~~~------~~~y~v~l~~i~vg~~~~~----------~~~~~~ivDTG 185 (273)
T cd05475 124 CLSS-NGGGFLFFGDD-LVPSSGVTWTPMRRESQ------KKHYSPGPASLLFNGQPTG----------GKGLEVVFDSG 185 (273)
T ss_pred EccC-CCCeEEEECCC-CCCCCCeeecccccCCC------CCeEEEeEeEEEECCEECc----------CCCceEEEECC
Confidence 9986 45789999843 33678999999987531 2479999999999998532 23467999999
Q ss_pred cccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcC----cEEEEccccee
Q 039965 276 TQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSG----AEMSVSGERLL 351 (419)
Q Consensus 276 ts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g----~~~~i~~~~y~ 351 (419)
|+++++|+++| +|+|+|+|++ ++++|+|++|+
T Consensus 186 Tt~t~lp~~~y--------------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~ 221 (273)
T cd05475 186 SSYTYFNAQAY--------------------------------------------FKPLTLKFGKGWRTRLLEIPPENYL 221 (273)
T ss_pred CceEEcCCccc--------------------------------------------cccEEEEECCCCceeEEEeCCCceE
Confidence 99999998864 2789999986 69999999999
Q ss_pred EEecCccCCCCceEEEEEEcCCC-CCCceeeeeccceeeeEEEEECCCCEEEEEcCCC
Q 039965 352 YRVPGLSRGRDSVYCFTFGNSDL-LGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRC 408 (419)
Q Consensus 352 ~~~~~~~~~~~~~~C~~i~~~~~-~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c 408 (419)
++. ..+..|+++..... ...+.||||+.|||++|+|||++++|||||+++|
T Consensus 222 ~~~------~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 222 IIS------EKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEc------CCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 874 34568998665432 2235799999999999999999999999999999
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=5.2e-47 Score=358.55 Aligned_cols=268 Identities=24% Similarity=0.378 Sum_probs=216.9
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 039965 59 SLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVT 138 (419)
Q Consensus 59 ~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~~~ 138 (419)
.|+++|+||||+|++.|+|||||+++||+ .|.
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~------------------------------------------------~~~ 33 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP------------------------------------------------DFS 33 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee------------------------------------------------eeE
Confidence 59999999999999999999999999997 268
Q ss_pred EecCCCCeeeeEEEEEEEEeCCCCCCCC------CCCCcceeeeccCCCC-----------chhhhhc------CCeeEE
Q 039965 139 LTYADLTSTEGNLATETILIGGPARPGF------EDARTTGLMGMNRGSL-----------SFITQMG------FPKFSY 195 (419)
Q Consensus 139 ~~Y~~gs~~~G~~~~D~v~~g~~~~~~~------~~~~~~GIlGLg~~~~-----------s~~~ql~------~~~Fs~ 195 (419)
+.|++|+.+.|.+++|+|++++.+++++ .....+||||||+... ++++||. .+.||+
T Consensus 34 ~~Y~~g~~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl 113 (295)
T cd05474 34 ISYGDGTSASGTWGTDTVSIGGATVKNLQFAVANSTSSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSL 113 (295)
T ss_pred EEeccCCcEEEEEEEEEEEECCeEecceEEEEEecCCCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEE
Confidence 8899987999999999999999888776 4567899999998876 4666654 378999
Q ss_pred eecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEe
Q 039965 196 CISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVD 273 (419)
Q Consensus 196 ~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiD 273 (419)
||.+.+ ..|.|+|||+|+. |.|++.|+|+...... ....+|.|++++|+++++.++.+. ......++||
T Consensus 114 ~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~---~~~~~~~v~l~~i~v~~~~~~~~~------~~~~~~~iiD 184 (295)
T cd05474 114 YLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGG---SEPSELSVTLSSISVNGSSGNTTL------LSKNLPALLD 184 (295)
T ss_pred EeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCC---CCceEEEEEEEEEEEEcCCCcccc------cCCCccEEEC
Confidence 998753 6899999999976 8999999999876421 012589999999999998765321 1345789999
Q ss_pred cccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEEEEcccceeEE
Q 039965 274 SGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGERLLYR 353 (419)
Q Consensus 274 SGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~i~~~~y~~~ 353 (419)
|||++++||.+++++|.+++.+..... .. .+..+|+.. .. |+|+|+|+|.+++|++++|+++
T Consensus 185 SGt~~~~lP~~~~~~l~~~~~~~~~~~-----~~-----~~~~~C~~~-------~~-p~i~f~f~g~~~~i~~~~~~~~ 246 (295)
T cd05474 185 SGTTLTYLPSDIVDAIAKQLGATYDSD-----EG-----LYVVDCDAK-------DD-GSLTFNFGGATISVPLSDLVLP 246 (295)
T ss_pred CCCccEeCCHHHHHHHHHHhCCEEcCC-----Cc-----EEEEeCCCC-------CC-CEEEEEECCeEEEEEHHHhEec
Confidence 999999999999999988875533211 11 124567654 33 9999999999999999999987
Q ss_pred ecCccCCCCceEEE-EEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcC
Q 039965 354 VPGLSRGRDSVYCF-TFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEV 406 (419)
Q Consensus 354 ~~~~~~~~~~~~C~-~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 406 (419)
.... ......|+ +|++.+. +.||||++|||++|++||.+++|||||++
T Consensus 247 ~~~~--~~~~~~C~~~i~~~~~---~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 247 ASTD--DGGDGACYLGIQPSTS---DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred cccC--CCCCCCeEEEEEeCCC---CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 5110 12356786 6887653 46999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.2e-46 Score=359.91 Aligned_cols=282 Identities=25% Similarity=0.485 Sum_probs=225.8
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC-----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Q 039965 59 SLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT-----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKG 133 (419)
Q Consensus 59 ~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~-----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~ 133 (419)
+|+++|+||||+|++.|++||||+++||++..| |..+..|++++|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~----------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG----------------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE-----------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce-----------------------
Confidence 499999999999999999999999999976553 4567899999999998764
Q ss_pred CCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCC-------chhhh------
Q 039965 134 LCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSL-------SFITQ------ 187 (419)
Q Consensus 134 ~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~-------s~~~q------ 187 (419)
+.+.+.|++|+ +.|.+++|+|++++..++++ .....+||||||+... +++.|
T Consensus 58 -~~~~~~y~~g~-~~G~~~~D~v~ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~ 135 (317)
T PF00026_consen 58 -KPFSISYGDGS-VSGNLVSDTVSIGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGL 135 (317)
T ss_dssp -EEEEEEETTEE-EEEEEEEEEEEETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTS
T ss_pred -eeeeeeccCcc-cccccccceEeeeeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhcc
Confidence 47999999995 99999999999999877654 2467899999996532 34444
Q ss_pred hcCCeeEEeecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCCC
Q 039965 188 MGFPKFSYCISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHT 265 (419)
Q Consensus 188 l~~~~Fs~~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 265 (419)
+.+++||++|.+.+ ..|.|+|||+|++ |.|++.|+|+... .+|.+.+++|.+++..... .
T Consensus 136 i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~---------~~w~v~~~~i~i~~~~~~~---------~ 197 (317)
T PF00026_consen 136 ISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS---------GYWSVPLDSISIGGESVFS---------S 197 (317)
T ss_dssp SSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST---------TTTEEEEEEEEETTEEEEE---------E
T ss_pred ccccccceeeeecccccchheeeccccccccCceeccCcccc---------ccccccccccccccccccc---------c
Confidence 34489999999765 6799999999988 8999999999943 4799999999999993221 2
Q ss_pred CCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEEEE
Q 039965 266 GAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSV 345 (419)
Q Consensus 266 ~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~i 345 (419)
....++||||+++++||.+++++|++++...... . .+..+|... ..+|.|+|.|++.+++|
T Consensus 198 ~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-------~-----~~~~~c~~~-------~~~p~l~f~~~~~~~~i 258 (317)
T PF00026_consen 198 SGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD-------G-----VYSVPCNST-------DSLPDLTFTFGGVTFTI 258 (317)
T ss_dssp EEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC-------S-----EEEEETTGG-------GGSEEEEEEETTEEEEE
T ss_pred cceeeecccccccccccchhhHHHHhhhcccccc-------e-----eEEEecccc-------cccceEEEeeCCEEEEe
Confidence 2346999999999999999999998777543221 1 123455443 56899999999999999
Q ss_pred cccceeEEecCccCCCCceEEEE-EEcCCC-CCCceeeeeccceeeeEEEEECCCCEEEEEcC
Q 039965 346 SGERLLYRVPGLSRGRDSVYCFT-FGNSDL-LGIEAFVIGHHHQQNLWVEFDLINSRVGFAEV 406 (419)
Q Consensus 346 ~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~-~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 406 (419)
+|++|+.+.. ......|+. |...+. .....+|||.+|||++|++||.+++|||||+|
T Consensus 259 ~~~~~~~~~~----~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 259 PPSDYIFKIE----DGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EHHHHEEEES----STTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cchHhccccc----ccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 9999999862 122348985 777332 23457999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=4.2e-42 Score=322.99 Aligned_cols=249 Identities=31% Similarity=0.551 Sum_probs=202.0
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeeeecCCCCC----CCCCC--CCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Q 039965 60 LTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTV----SFNSI--FNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKG 133 (419)
Q Consensus 60 y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~----~~~~~--f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~ 133 (419)
|+++|.||||+|++.|+|||||+++||+|..|. +.... |++..|+++...
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~------------------------ 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDT------------------------ 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecC------------------------
Confidence 789999999999999999999999999998752 22222 566666665432
Q ss_pred CCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC------------CCCCcceeeeccCCC------CchhhhhcC-----
Q 039965 134 LCRVTLTYADLTSTEGNLATETILIGGPARPGF------------EDARTTGLMGMNRGS------LSFITQMGF----- 190 (419)
Q Consensus 134 ~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~------------~~~~~~GIlGLg~~~------~s~~~ql~~----- 190 (419)
.|.+.+.|++| .+.|.+++|+|++++.+++++ .....+||||||+.. .++++||..
T Consensus 57 ~~~~~~~Y~~g-~~~g~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~ 135 (283)
T cd05471 57 GCTFSITYGDG-SVTGGLGTDTVTIGGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLIS 135 (283)
T ss_pred CCEEEEEECCC-eEEEEEEEeEEEECCEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCC
Confidence 47899999998 799999999999998876665 246889999999988 678887654
Q ss_pred -CeeEEeecCC---CCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCCC
Q 039965 191 -PKFSYCISGV---DSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHT 265 (419)
Q Consensus 191 -~~Fs~~l~~~---~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 265 (419)
++||+||.+. ...|.|+|||+|++ +.+++.|+|++... ..+|.|.+++|++++..... ..
T Consensus 136 ~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~-------~~~~~v~l~~i~v~~~~~~~--------~~ 200 (283)
T cd05471 136 SPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNG-------PGYWQVPLDGISVGGKSVIS--------SS 200 (283)
T ss_pred CCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCC-------CCEEEEEeCeEEECCceeee--------cC
Confidence 8999999984 47999999999987 89999999999851 35899999999999974110 23
Q ss_pred CCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEEEE
Q 039965 266 GAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSV 345 (419)
Q Consensus 266 ~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~i 345 (419)
....++|||||++++||.+++++|.+++.+.... . ..|+...|.. ...+|+|+|+|
T Consensus 201 ~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~-----~----------~~~~~~~~~~--~~~~p~i~f~f------- 256 (283)
T cd05471 201 GGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS-----S----------DGGYGVDCSP--CDTLPDITFTF------- 256 (283)
T ss_pred CCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc-----c----------CCcEEEeCcc--cCcCCCEEEEE-------
Confidence 4578999999999999999999998887665432 0 1233333322 26899999999
Q ss_pred cccceeEEecCccCCCCceEEEEEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEc
Q 039965 346 SGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAE 405 (419)
Q Consensus 346 ~~~~y~~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 405 (419)
.+|||++|||++|++||.+++|||||+
T Consensus 257 ---------------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ---------------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ---------------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 489999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.95 E-value=7e-28 Score=206.46 Aligned_cols=144 Identities=40% Similarity=0.791 Sum_probs=114.5
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCeeEE
Q 039965 60 LTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVTL 139 (419)
Q Consensus 60 y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~~~~ 139 (419)
|+++|.||||+|++.|++||||+++|++| ..+.|+|++|+||+.+.|.++.|...... ....|..++.|.|.+
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C-----~~~~f~~~~Sst~~~v~C~s~~C~~~~~~--~~~~~~~~~~C~y~~ 73 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC-----PDPPFDPSKSSTYRPVPCSSPQCSSAPSF--CPCCCCSNNSCPYSQ 73 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET---------STT-TTSSBEC-BTTSHHHHHCTSS--BTCCTCESSEEEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC-----CCcccCCccCCcccccCCCCcchhhcccc--cccCCCCcCccccee
Confidence 89999999999999999999999999999 47899999999999999999999875432 122334458899999
Q ss_pred ecCCCCeeeeEEEEEEEEeCCCC-----CCCC----------CCCCcceeeeccCCCCchhhhh---cCCeeEEeecC--
Q 039965 140 TYADLTSTEGNLATETILIGGPA-----RPGF----------EDARTTGLMGMNRGSLSFITQM---GFPKFSYCISG-- 199 (419)
Q Consensus 140 ~Y~~gs~~~G~~~~D~v~~g~~~-----~~~~----------~~~~~~GIlGLg~~~~s~~~ql---~~~~Fs~~l~~-- 199 (419)
.|++++.+.|.+++|+|+++... ++++ .....+||||||+.+.||++|| ..++||+||.+
T Consensus 74 ~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL~~~~ 153 (164)
T PF14543_consen 74 SYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCLPSSS 153 (164)
T ss_dssp EETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB-S-S
T ss_pred ecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEECCCCC
Confidence 99999999999999999998653 2222 2348899999999999999999 77999999998
Q ss_pred CCCCceEEeCC
Q 039965 200 VDSSGVLLFGD 210 (419)
Q Consensus 200 ~~~~G~l~fGg 210 (419)
.+..|.|+||+
T Consensus 154 ~~~~g~l~fG~ 164 (164)
T PF14543_consen 154 PSSSGFLSFGD 164 (164)
T ss_dssp SSSEEEEEECS
T ss_pred CCCCEEEEeCc
Confidence 34899999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.92 E-value=1.3e-24 Score=186.23 Aligned_cols=156 Identities=38% Similarity=0.587 Sum_probs=120.8
Q ss_pred eEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccc-cc-cCCCcccccccc
Q 039965 238 AYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGIL-RV-FDDPNFVFQGAM 315 (419)
Q Consensus 238 ~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 315 (419)
+|.|++.+|+|++++++++...+.. ..+...++|||||++++||+++|++|++++.+++.... .. ... ...+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~-----~~~~ 74 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPP-----FSGF 74 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE--------TT-
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhccccccccc-----CCCC
Confidence 3899999999999999999988866 56788999999999999999999999999999997652 11 111 1246
Q ss_pred ccccccccC--CCCCCCCCeEEEEEc-CcEEEEcccceeEEecCccCCCCceEEEEEEcCCCCCCceeeeeccceeeeEE
Q 039965 316 DLCYLIEST--GPSLPRLPIVSLMFS-GAEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWV 392 (419)
Q Consensus 316 ~~C~~~~~~--~~~~~~~P~i~f~f~-g~~~~i~~~~y~~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~ 392 (419)
..||+.+.. ......+|+|+|+|. |.+++|++++|+++. .++..|++|.+++....+..|||..+|+++++
T Consensus 75 ~~Cy~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~------~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v 148 (161)
T PF14541_consen 75 DLCYNLSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQV------SPGVFCLAFVPSDADDDGVSVIGNFQQQNYHV 148 (161)
T ss_dssp S-EEEGGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEE------CTTEEEESEEEETSTTSSSEEE-HHHCCTEEE
T ss_pred CceeeccccccccccccCCeEEEEEeCCcceeeeccceeeec------cCCCEEEEEEccCCCCCCcEEECHHHhcCcEE
Confidence 799999861 112368999999999 899999999999996 46789999888833344579999999999999
Q ss_pred EEECCCCEEEEEc
Q 039965 393 EFDLINSRVGFAE 405 (419)
Q Consensus 393 vfD~~~~riGfa~ 405 (419)
+||++++||||+|
T Consensus 149 ~fDl~~~~igF~~ 161 (161)
T PF14541_consen 149 VFDLENGRIGFAP 161 (161)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCEEEEeC
Confidence 9999999999986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.82 E-value=5.1e-20 Score=147.29 Aligned_cols=91 Identities=33% Similarity=0.561 Sum_probs=76.4
Q ss_pred EEEEeCCCCceEEEEEeCCCCeeeecCCCCC----CCCCCC-CCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 039965 62 VSLKLGSPPQDVTMVLDTGSELSWLHCKKTV----SFNSIF-NPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCR 136 (419)
Q Consensus 62 ~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~----~~~~~f-~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~ 136 (419)
++|.||||+|++.|+|||||+++||+|.+|. ..++.| ++++|++++... |.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~------------------------~~ 56 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG------------------------CT 56 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC------------------------cE
Confidence 4799999999999999999999999998752 335566 999999987653 68
Q ss_pred eEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeec
Q 039965 137 VTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGM 177 (419)
Q Consensus 137 ~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGL 177 (419)
|.+.|++| .+.|.+++|+|++++..++++ .....+|||||
T Consensus 57 ~~~~Y~~g-~~~g~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 57 FSITYGTG-SLSGGLSTDTVSIGDIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEeCCC-eEEEEEEEEEEEECCEEECCEEEEEEEecCCccccccccccccCC
Confidence 99999999 688999999999999877665 12468999997
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.04 E-value=1.4e-05 Score=61.58 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=59.0
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 039965 59 SLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVT 138 (419)
Q Consensus 59 ~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~~~ 138 (419)
.|++++.|| ++++.++|||||+.+|+.-.. .+....... ......
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~---------------~~~l~~~~~------------------~~~~~~ 46 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEEL---------------AERLGLPLT------------------LGGKVT 46 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHH---------------HHHcCCCcc------------------CCCcEE
Confidence 389999999 899999999999999985321 000000000 012456
Q ss_pred EecCCCCeeeeEEEEEEEEeCCCCCCCC-----CCC--CcceeeeccC
Q 039965 139 LTYADLTSTEGNLATETILIGGPARPGF-----EDA--RTTGLMGMNR 179 (419)
Q Consensus 139 ~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-----~~~--~~~GIlGLg~ 179 (419)
+..++|.........+.+++|+..++++ ... ..+||||+.+
T Consensus 47 ~~~~~G~~~~~~~~~~~i~ig~~~~~~~~~~v~d~~~~~~~gIlG~d~ 94 (96)
T cd05483 47 VQTANGRVRAARVRLDSLQIGGITLRNVPAVVLPGDALGVDGLLGMDF 94 (96)
T ss_pred EEecCCCccceEEEcceEEECCcEEeccEEEEeCCcccCCceEeChHH
Confidence 7777876666666789999999877665 333 4899999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.02 E-value=0.0038 Score=50.37 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=55.4
Q ss_pred cceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039965 56 HNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLC 135 (419)
Q Consensus 56 ~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~ 135 (419)
.++.|++++.|. ++++.++||||++.+-++..-.... ..++.. . .-
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L--gl~~~~------~------------------------~~ 53 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL--GLDLNR------L------------------------GY 53 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc--CCCccc------C------------------------Cc
Confidence 356699999998 8899999999999998753210000 000000 0 00
Q ss_pred eeEEecCCCCeeeeEEEEEEEEeCCCCCCCC------CCCCcceeeecc
Q 039965 136 RVTLTYADLTSTEGNLATETILIGGPARPGF------EDARTTGLMGMN 178 (419)
Q Consensus 136 ~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~------~~~~~~GIlGLg 178 (419)
...+.=+.|........-|.+++|+...++. .....+|+||+.
T Consensus 54 ~~~~~ta~G~~~~~~~~l~~l~iG~~~~~nv~~~v~~~~~~~~~LLGm~ 102 (121)
T TIGR02281 54 TVTVSTANGQIKAARVTLDRVAIGGIVVNDVDAMVAEGGALSESLLGMS 102 (121)
T ss_pred eEEEEeCCCcEEEEEEEeCEEEECCEEEeCcEEEEeCCCcCCceEcCHH
Confidence 2344444553344445779999999887776 222348999985
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.17 E-value=0.017 Score=43.43 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=48.7
Q ss_pred EEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCeeEEec
Q 039965 62 VSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCRVTLTY 141 (419)
Q Consensus 62 ~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~~~~~Y 141 (419)
+++.|+ .+++++++|||++.+.+.-.-. +...+.. . .......+.-
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~---------------~~l~~~~-------~----------~~~~~~~~~~ 46 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLA---------------KKLGLKP-------R----------PKSVPISVSG 46 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHH---------------HHcCCCC-------c----------CCceeEEEEe
Confidence 467888 8899999999999877642100 0000000 0 0001233333
Q ss_pred CCCCeeeeEEEEEEEEeCCCCCCCC------CCCCcceeeecc
Q 039965 142 ADLTSTEGNLATETILIGGPARPGF------EDARTTGLMGMN 178 (419)
Q Consensus 142 ~~gs~~~G~~~~D~v~~g~~~~~~~------~~~~~~GIlGLg 178 (419)
.+|........-+.+++|+....+. .....+||||+-
T Consensus 47 ~~g~~~~~~~~~~~i~ig~~~~~~~~~~v~~~~~~~~~iLG~d 89 (90)
T PF13650_consen 47 AGGSVTVYRGRVDSITIGGITLKNVPFLVVDLGDPIDGILGMD 89 (90)
T ss_pred CCCCEEEEEEEEEEEEECCEEEEeEEEEEECCCCCCEEEeCCc
Confidence 4443444445567899998776554 367889999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.53 E-value=0.12 Score=41.81 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.5
Q ss_pred eeeeeccceeeeEEEEECCCCEEEE
Q 039965 379 AFVIGHHHQQNLWVEFDLINSRVGF 403 (419)
Q Consensus 379 ~~iLG~~fl~~~y~vfD~~~~riGf 403 (419)
..|||..||+.+-.+.|+.+++|-+
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 4799999999999999999998853
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.47 E-value=0.095 Score=42.44 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=53.6
Q ss_pred ceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 039965 57 NVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCR 136 (419)
Q Consensus 57 ~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~ 136 (419)
...+++++.|+ ++++.+++|||++.+++.-.- .+...+... ..-.
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~---------------a~~lgl~~~------------------~~~~ 58 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKAC---------------AEKCGLMRL------------------IDKR 58 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHH---------------HHHcCCccc------------------cCcc
Confidence 34489999999 889999999999999984221 001110000 0001
Q ss_pred eE-EecC-CCCeeeeEEEEEEEEeCCCCCCCC----CCCCcceeeecc
Q 039965 137 VT-LTYA-DLTSTEGNLATETILIGGPARPGF----EDARTTGLMGMN 178 (419)
Q Consensus 137 ~~-~~Y~-~gs~~~G~~~~D~v~~g~~~~~~~----~~~~~~GIlGLg 178 (419)
+. ...+ ++....|....+.+.+++...+-. .....|+|||+-
T Consensus 59 ~~~~~~g~g~~~~~g~~~~~~l~i~~~~~~~~~~Vl~~~~~d~ILG~d 106 (124)
T cd05479 59 FQGIAKGVGTQKILGRIHLAQVKIGNLFLPCSFTVLEDDDVDFLIGLD 106 (124)
T ss_pred eEEEEecCCCcEEEeEEEEEEEEECCEEeeeEEEEECCCCcCEEecHH
Confidence 22 2232 223566777778899998765422 445889999984
No 32
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.35 E-value=0.1 Score=39.54 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=23.9
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeeeec
Q 039965 60 LTVSLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 60 y~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
|++++.|+ ++++.+++||||+.+++.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis 26 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVIS 26 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeC
Confidence 47899999 999999999999999985
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=93.17 E-value=1 Score=36.99 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=25.7
Q ss_pred eeeeeccceeeeEEEEECCCCEEEEEcC
Q 039965 379 AFVIGHHHQQNLWVEFDLINSRVGFAEV 406 (419)
Q Consensus 379 ~~iLG~~fl~~~y~vfD~~~~riGfa~~ 406 (419)
..|||..+|+.+..+-|+.+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4899999999999999999999999753
No 34
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=92.32 E-value=0.34 Score=42.06 Aligned_cols=84 Identities=13% Similarity=0.117 Sum_probs=58.5
Q ss_pred ccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCC
Q 039965 49 ANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPAS 128 (419)
Q Consensus 49 ~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~ 128 (419)
...|....+++|.++..|. +|++..++|||-+.+-++-.+.. .-.|+.+..
T Consensus 95 ~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~--RlGid~~~l------------------------- 145 (215)
T COG3577 95 EVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR--RLGIDLNSL------------------------- 145 (215)
T ss_pred EEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH--HhCCCcccc-------------------------
Confidence 3456677789999999999 99999999999999887533210 011222111
Q ss_pred CCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC
Q 039965 129 CDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF 166 (419)
Q Consensus 129 c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~ 166 (419)
.-++.+.-.+|..-...+--|.|.||+....++
T Consensus 146 -----~y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~nV 178 (215)
T COG3577 146 -----DYTITVSTANGRARAAPVTLDRVQIGGIRVKNV 178 (215)
T ss_pred -----CCceEEEccCCccccceEEeeeEEEccEEEcCc
Confidence 114566667785555667789999999888776
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=90.15 E-value=0.56 Score=33.83 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=26.9
Q ss_pred cceeEEEEEEeCCCCceEEEEEeCCCCeeeecC
Q 039965 56 HNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHC 88 (419)
Q Consensus 56 ~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c 88 (419)
..+.+++.+.|| ++.+..++||||+...+..
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~ 35 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISE 35 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCH
Confidence 356699999999 7999999999999988753
No 36
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=89.44 E-value=2.4 Score=40.42 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=29.5
Q ss_pred ecCCCCeeeeEEEEEEEEeCCCCCCCC---------------------------CCCCcceeeeccCCC
Q 039965 140 TYADLTSTEGNLATETILIGGPARPGF---------------------------EDARTTGLMGMNRGS 181 (419)
Q Consensus 140 ~Y~~gs~~~G~~~~D~v~~g~~~~~~~---------------------------~~~~~~GIlGLg~~~ 181 (419)
.|++| ..=|-+.+-+|++++....+. ......||||+|.-.
T Consensus 83 ~F~sg-ytWGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 83 QFASG-YTWGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred hccCc-ccccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 47777 455889999999998643221 456789999998543
No 37
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=88.72 E-value=2.8 Score=32.84 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.0
Q ss_pred eeeeeccceeeeEEEEECCCCEE
Q 039965 379 AFVIGHHHQQNLWVEFDLINSRV 401 (419)
Q Consensus 379 ~~iLG~~fl~~~y~vfD~~~~ri 401 (419)
..+||..||+.+-.+.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 47999999999999999987753
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=85.49 E-value=1.8 Score=34.74 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=27.6
Q ss_pred eeEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHH
Q 039965 237 VAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSAL 289 (419)
Q Consensus 237 ~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 289 (419)
+++.+ .++|||+.. .+++|||++.+.++.+..+++
T Consensus 10 g~~~v---~~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYA---TGRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEE---EEEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 45655 467888865 489999999999999987665
No 39
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=85.06 E-value=1.4 Score=33.74 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=23.3
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeeeecCC
Q 039965 61 TVSLKLGSPPQDVTMVLDTGSELSWLHCK 89 (419)
Q Consensus 61 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~ 89 (419)
+++|.|. .+++.+++||||+.+-++-.
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 4788999 88999999999999888643
No 40
>PF13650 Asp_protease_2: Aspartyl protease
Probab=84.92 E-value=1.2 Score=33.14 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=23.9
Q ss_pred EEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHH
Q 039965 246 IKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSAL 289 (419)
Q Consensus 246 i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 289 (419)
++|+|+.+ .+++|||++.+.+.++.++++
T Consensus 3 v~vng~~~---------------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV---------------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE---------------EEEEcCCCCcEEECHHHHHHc
Confidence 56777765 489999999999999988665
No 41
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=84.27 E-value=0.59 Score=35.68 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=9.7
Q ss_pred CCchhhHHHHHHHHHhhhcc
Q 039965 1 MASTNIFLLQLSIFLLIFLP 20 (419)
Q Consensus 1 m~~~~~~~~~~l~~~~l~~~ 20 (419)
|||..++||. |+|.++|++
T Consensus 1 MaSK~~llL~-l~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLG-LLLAALLLI 19 (95)
T ss_pred CchhHHHHHH-HHHHHHHHH
Confidence 9977644444 333333333
No 42
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=82.51 E-value=1.9 Score=32.56 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=25.5
Q ss_pred eEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHH
Q 039965 245 GIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSAL 289 (419)
Q Consensus 245 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 289 (419)
.+.|+|+.+. +.+|||++.+.++.+.+.++
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 4678888774 89999999999999998665
No 43
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=82.14 E-value=2.6 Score=30.27 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=25.3
Q ss_pred eEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHH
Q 039965 245 GIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSAL 289 (419)
Q Consensus 245 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 289 (419)
.+.|++..+ .+++|||++..+++....+.+
T Consensus 12 ~~~I~g~~~---------------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQV---------------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEE---------------EEEEeCCCcceecCHHHHHHh
Confidence 367888776 389999999999999998775
No 44
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=79.84 E-value=2.5 Score=31.56 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.3
Q ss_pred EEEeCCCCceEEEEEeCCCCeeeec
Q 039965 63 SLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 63 ~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
.+.|. +|++.+++|||++.+-+.
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~ 24 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLK 24 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEEC
Confidence 46777 899999999999999986
No 45
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=77.41 E-value=4.4 Score=30.36 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=24.0
Q ss_pred eEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHH
Q 039965 245 GIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSAL 289 (419)
Q Consensus 245 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 289 (419)
.+.|+++.+ .+++|||++.++++.+..+.+
T Consensus 6 ~v~i~~~~~---------------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV---------------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 467787765 489999999999999876554
No 46
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=77.35 E-value=3.3 Score=31.06 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEeCCCCceEEEEEeCCCCeeeec
Q 039965 63 SLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 63 ~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
.+.|+ +|.+.+++|||++++-+.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~ 24 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIA 24 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEc
Confidence 46777 999999999999999986
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=76.69 E-value=3.4 Score=30.82 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=24.2
Q ss_pred EEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHH
Q 039965 246 IKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSAL 289 (419)
Q Consensus 246 i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 289 (419)
+.|||+.+ .+++|||.+.+.++.+..+.+
T Consensus 3 v~InG~~~---------------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI---------------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE---------------EEEEECCCCeEEECHHHhhhc
Confidence 57788876 389999999999999987664
No 48
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=68.56 E-value=19 Score=27.02 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.4
Q ss_pred CCCCcEEEecccccccccHHHH
Q 039965 265 TGAGQTMVDSGTQFTFLLGEVY 286 (419)
Q Consensus 265 ~~~~~~iiDSGts~~~lp~~~~ 286 (419)
..+...++|||+..+.+|....
T Consensus 7 ~s~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 7 TSGLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CCCcEEEEeCCCceEeeccccc
Confidence 4556789999999999998764
No 49
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=67.82 E-value=14 Score=32.31 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=19.5
Q ss_pred eeeeeccceeeeEEEEECCCCEEEEEc
Q 039965 379 AFVIGHHHQQNLWVEFDLINSRVGFAE 405 (419)
Q Consensus 379 ~~iLG~~fl~~~y~vfD~~~~riGfa~ 405 (419)
..|||.+|+|.++=-...+ .+|-|..
T Consensus 92 d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 92 DIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 5899999999887665554 4677764
No 50
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=67.36 E-value=5.6 Score=30.37 Aligned_cols=27 Identities=15% Similarity=0.486 Sum_probs=22.0
Q ss_pred eEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHH
Q 039965 245 GIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVY 286 (419)
Q Consensus 245 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~ 286 (419)
.|.++++.+ .+++|||+..+.++...+
T Consensus 9 ~v~i~g~~i---------------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI---------------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE---------------EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE---------------EEEEecCCCcceeccccc
Confidence 467788876 389999999999998754
No 51
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=65.49 E-value=8.6 Score=32.34 Aligned_cols=27 Identities=19% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEEeCCCCceEEEEEeCCCCeeeecC
Q 039965 62 VSLKLGSPPQDVTMVLDTGSELSWLHC 88 (419)
Q Consensus 62 ~~i~iGtP~Q~~~v~~DTGSs~~wv~c 88 (419)
..+.+++...+++++|||||+...+..
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeeh
Confidence 455566668899999999999888753
No 52
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=60.69 E-value=10 Score=28.73 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=18.7
Q ss_pred cEEEecccccccccHHHHHHH
Q 039965 269 QTMVDSGTQFTFLLGEVYSAL 289 (419)
Q Consensus 269 ~~iiDSGts~~~lp~~~~~~l 289 (419)
.+.+|||++...||...++++
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEEecCCEEEeccHHHHhhh
Confidence 488999999999999988775
No 53
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=60.17 E-value=12 Score=30.08 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=23.9
Q ss_pred eEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHH
Q 039965 245 GIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSAL 289 (419)
Q Consensus 245 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 289 (419)
.+++||+.+. |.+|||+..+.++.+..+++
T Consensus 28 ~~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 4788998873 99999999999999998774
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=58.78 E-value=16 Score=29.45 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=21.2
Q ss_pred ceeEEEEEEeCCCCceEEEEEeCCCCeeeec
Q 039965 57 NVSLTVSLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 57 ~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
..++|++++|+ ++++++++|||.-.+-+.
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims 50 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMS 50 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEE
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccC
Confidence 45689999999 999999999999888763
No 55
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=57.00 E-value=23 Score=31.00 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=28.0
Q ss_pred eeEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHH
Q 039965 237 VAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSAL 289 (419)
Q Consensus 237 ~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l 289 (419)
+||.+ ...|||+.+. .++|||.|.+.++.+....+
T Consensus 104 GHF~a---~~~VNGk~v~---------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 104 GHFEA---NGRVNGKKVD---------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CcEEE---EEEECCEEEE---------------EEEecCcceeecCHHHHHHh
Confidence 45555 4789999874 79999999999999886554
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.93 E-value=19 Score=28.76 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=18.1
Q ss_pred EEEecccc-cccccHHHHHHH
Q 039965 270 TMVDSGTQ-FTFLLGEVYSAL 289 (419)
Q Consensus 270 ~iiDSGts-~~~lp~~~~~~l 289 (419)
.++|||.+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999999876
No 57
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=38.08 E-value=11 Score=30.42 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=0.0
Q ss_pred CCchhhHHHHHHHHHhhhccc
Q 039965 1 MASTNIFLLQLSIFLLIFLPK 21 (419)
Q Consensus 1 m~~~~~~~~~~l~~~~l~~~~ 21 (419)
|+.+++.||..|++.+.++..
T Consensus 1 m~pr~l~~LavLL~~A~Lfag 21 (143)
T PF05887_consen 1 MTPRHLCLLAVLLFGAALFAG 21 (143)
T ss_dssp ---------------------
T ss_pred Ccccccccccccccccccccc
Confidence 888887776665555444433
No 58
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=33.45 E-value=56 Score=25.42 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEEEeCCCCc----eEEEEEeCCCCeee-ec
Q 039965 62 VSLKLGSPPQ----DVTMVLDTGSELSW-LH 87 (419)
Q Consensus 62 ~~i~iGtP~Q----~~~v~~DTGSs~~w-v~ 87 (419)
+++.|..|.| ++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 6788888733 67899999998664 44
No 59
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=27.69 E-value=1e+02 Score=26.18 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.0
Q ss_pred CcEEEecccccccccHHHHHHH
Q 039965 268 GQTMVDSGTQFTFLLGEVYSAL 289 (419)
Q Consensus 268 ~~~iiDSGts~~~lp~~~~~~l 289 (419)
..++||||++..++..++.+.|
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEeCCCccceeehhhHHhh
Confidence 3589999999999999987776
No 60
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=27.00 E-value=3.6e+02 Score=26.03 Aligned_cols=106 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred eEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHH--HHHHHHHhhccccccCCCccccccccccccccc
Q 039965 245 GIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSAL--KNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIE 322 (419)
Q Consensus 245 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 322 (419)
+++++|..++ |.||||+-++.+...-.+.. ...+..+..+..+.......
T Consensus 239 N~~ing~~VK---------------AfVDsGaq~timS~~Caer~gL~rlid~r~~g~a~gvg~~ki------------- 290 (380)
T KOG0012|consen 239 NCEINGVPVK---------------AFVDSGAQTTIMSAACAERCGLNRLIDKRFQGEARGVGTEKI------------- 290 (380)
T ss_pred EEEECCEEEE---------------EEEcccchhhhhhHHHHHHhChHHHhhhhhhccccCCCcccc-------------
Q ss_pred cCCCCCCCCCeEEEEEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEE
Q 039965 323 STGPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRV 401 (419)
Q Consensus 323 ~~~~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~ri 401 (419)
....-...+.+++..++ |-. ........ ..||...||.+--.-|++++++
T Consensus 291 -----~g~Ih~~~lki~~~~l~---------------------c~ftV~d~~~~d---~llGLd~Lrr~~ccIdL~~~~L 341 (380)
T KOG0012|consen 291 -----LGRIHQAQLKIEDLYLP---------------------CSFTVLDRRDMD---LLLGLDMLRRHQCCIDLKTNVL 341 (380)
T ss_pred -----cceeEEEEEEeccEeec---------------------cceEEecCCCcc---hhhhHHHHHhccceeecccCeE
Q ss_pred EEEcCC
Q 039965 402 GFAEVR 407 (419)
Q Consensus 402 Gfa~~~ 407 (419)
-|+...
T Consensus 342 ~ig~~~ 347 (380)
T KOG0012|consen 342 RIGNTE 347 (380)
T ss_pred EecCCC
No 61
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=25.31 E-value=69 Score=22.19 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=16.0
Q ss_pred EEEeCCCCceEEEEEeCCCCeeee
Q 039965 63 SLKLGSPPQDVTMVLDTGSELSWL 86 (419)
Q Consensus 63 ~i~iGtP~Q~~~v~~DTGSs~~wv 86 (419)
++.++ +..+..++||||...-+
T Consensus 2 ~~~~~--~~~~~~liDtgs~~~~~ 23 (92)
T cd00303 2 KGKIN--GVPVRALVDSGASVNFI 23 (92)
T ss_pred EEEEC--CEEEEEEEcCCCccccc
Confidence 34566 47889999999886543
No 62
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=24.22 E-value=1.1e+02 Score=23.60 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=17.9
Q ss_pred cEEEecccccccccHHHHHHH
Q 039965 269 QTMVDSGTQFTFLLGEVYSAL 289 (419)
Q Consensus 269 ~~iiDSGts~~~lp~~~~~~l 289 (419)
.|.+|||+..+.+.++-.++.
T Consensus 11 kAfVDsGaQ~timS~~caerc 31 (103)
T cd05480 11 RALVDTGCQYNLISAACLDRL 31 (103)
T ss_pred EEEEecCCchhhcCHHHHHHc
Confidence 489999999999998877654
No 63
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=23.21 E-value=1.2e+02 Score=24.68 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=22.5
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeeeec
Q 039965 60 LTVSLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 60 y~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
-.+.+.|. .+...+++|+|++...+.
T Consensus 22 i~g~~~I~--~~~~~vLiDSGAThsFIs 47 (135)
T PF08284_consen 22 ITGTFLIN--SIPASVLIDSGATHSFIS 47 (135)
T ss_pred EEEEEEec--cEEEEEEEecCCCcEEcc
Confidence 66788888 788999999999998874
No 64
>COG2913 OlmA Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]
Probab=21.06 E-value=48 Score=27.55 Aligned_cols=17 Identities=35% Similarity=0.685 Sum_probs=14.6
Q ss_pred EeCCCCceEEEEEeCCCCeeee
Q 039965 65 KLGSPPQDVTMVLDTGSELSWL 86 (419)
Q Consensus 65 ~iGtP~Q~~~v~~DTGSs~~wv 86 (419)
.+||| .+.||-...+|-
T Consensus 61 lLGtP-----~~~d~F~~~~Wy 77 (147)
T COG2913 61 LLGTP-----SLVDTFDTNTWY 77 (147)
T ss_pred HhCCC-----eeecCCCCceEE
Confidence 58998 899999999993
Done!