Query 039965
Match_columns 419
No_of_seqs 250 out of 1519
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 05:31:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 1E-58 3.5E-63 454.6 23.9 343 26-407 5-399 (413)
2 2x0b_A Renin; hydrolase-hormon 100.0 7.1E-59 2.4E-63 451.0 20.7 291 50-407 53-383 (383)
3 3psg_A Pepsinogen; hydrolase(a 100.0 1.9E-57 6.4E-62 440.3 23.4 291 48-407 46-370 (370)
4 3aup_A SBG7S, BG, basic 7S glo 100.0 1.3E-56 4.4E-61 440.2 26.4 322 56-411 19-397 (403)
5 1tzs_A Cathepsin E; hydrolase, 100.0 1.2E-56 4.2E-61 432.6 25.5 296 49-410 14-345 (351)
6 3cms_A Chymosin B; hydrolase, 100.0 7E-57 2.4E-61 429.6 19.4 287 50-407 6-323 (323)
7 4aa9_A Chymosin; hydrolase, as 100.0 1.4E-56 4.8E-61 427.3 18.8 288 49-407 2-320 (320)
8 1am5_A Pepsin, acid proteinase 100.0 1.6E-55 5.5E-60 420.5 24.1 286 51-407 5-324 (324)
9 1dpj_A Proteinase A; proteinas 100.0 1.2E-55 4.2E-60 422.2 23.0 288 50-407 5-329 (329)
10 1mpp_A Pepsin; hydrolase(acid 100.0 2.2E-55 7.4E-60 425.8 23.7 298 50-411 10-359 (361)
11 1htr_B Gastricsin; aspartyl pr 100.0 2.1E-55 7.1E-60 420.6 22.1 289 50-407 5-329 (329)
12 3k1w_A Renin; protease, altern 100.0 3.4E-55 1.2E-59 421.5 20.8 292 49-407 9-340 (341)
13 2ewy_A Beta-secretase 2; BACE2 100.0 1.4E-54 4.8E-59 423.6 25.0 310 50-411 5-359 (383)
14 3c9x_A Trichoderma reesei aspa 100.0 2.3E-54 7.8E-59 413.1 25.1 286 55-406 12-329 (329)
15 2apr_A Rhizopuspepsin; hydrola 100.0 1.9E-54 6.6E-59 412.9 23.9 281 55-407 12-324 (325)
16 3fv3_A SAPP1P-secreted asparti 100.0 1.2E-54 4E-59 417.3 22.3 282 58-410 12-332 (339)
17 3lpj_A Beta-secretase 1; alzhe 100.0 2.3E-54 8E-59 430.4 24.8 314 50-412 66-425 (455)
18 1j71_A Candidapepsin, aspartic 100.0 8E-55 2.7E-59 417.3 20.4 279 57-410 11-327 (334)
19 2qzx_A Candidapepsin-5; aspart 100.0 9.7E-55 3.3E-59 418.2 20.4 287 57-410 11-334 (342)
20 3vf3_A Beta-secretase 1; struc 100.0 4.3E-54 1.5E-58 422.6 24.7 314 50-412 20-379 (402)
21 1oew_A Endothiapepsin; hydrola 100.0 1.2E-54 4E-59 415.1 19.9 285 56-406 13-329 (329)
22 1qdm_A Prophytepsin; aspartic 100.0 5.4E-54 1.8E-58 427.7 25.2 307 48-407 42-478 (478)
23 2qp8_A Beta-secretase 1; BACE1 100.0 9.9E-54 3.4E-58 419.0 25.8 311 50-411 13-371 (395)
24 3pvk_A Candidapepsin-2; hydrol 100.0 2.7E-54 9.3E-59 415.4 20.2 288 57-410 11-334 (342)
25 1miq_A Plasmepsin; aspartic pr 100.0 3.5E-54 1.2E-58 418.0 19.2 290 48-407 52-374 (375)
26 3qvc_A Histo-aspartic protease 100.0 3.4E-54 1.2E-58 425.3 19.4 289 48-407 127-449 (451)
27 1yg9_A Aspartic protease BLA G 100.0 1.9E-53 6.4E-58 406.8 19.8 285 49-407 8-329 (330)
28 1t6e_X Xylanase inhibitor; two 100.0 1.4E-52 4.9E-57 408.5 24.4 321 29-408 2-374 (381)
29 1ibq_A Aspergillopepsin; aspar 100.0 9.5E-53 3.3E-57 401.2 22.2 282 56-407 12-325 (325)
30 2bju_A Plasmepsin II; aspartic 100.0 2E-53 6.7E-58 419.3 17.6 287 50-407 130-450 (453)
31 1izd_A Aspartic proteinase; su 100.0 7.6E-53 2.6E-57 401.4 20.9 279 56-407 13-323 (323)
32 1bxo_A Protein (penicillopepsi 100.0 1.1E-52 3.7E-57 400.5 18.6 279 56-407 13-323 (323)
33 1wkr_A Polyporopepsin; hydrola 100.0 1.6E-51 5.6E-56 395.4 20.0 289 57-412 11-338 (340)
34 1b5f_A Protein (cardosin A); h 100.0 1.2E-41 4E-46 310.0 15.0 203 50-294 5-237 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 3.7E-35 1.3E-39 268.0 15.9 201 167-407 22-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 2.8E-23 9.6E-28 160.1 8.6 86 50-160 5-96 (97)
37 1b5f_B Protein (cardosin A); h 99.7 4.6E-18 1.6E-22 128.7 8.5 82 315-407 4-87 (87)
38 2i1a_A DNA damage-inducible pr 93.6 0.22 7.5E-06 40.4 7.7 27 379-405 109-135 (148)
39 3s8i_A Protein DDI1 homolog 1; 91.3 0.61 2.1E-05 37.8 7.3 29 379-407 108-136 (148)
40 2hs1_A HIV-1 protease; ultra-h 87.3 0.63 2.2E-05 34.8 4.1 25 61-87 10-34 (99)
41 1fmb_A EIAV protease; hydrolas 87.3 0.57 1.9E-05 35.4 3.9 25 61-87 10-34 (104)
42 2i1a_A DNA damage-inducible pr 86.7 0.5 1.7E-05 38.2 3.6 30 56-87 23-52 (148)
43 3ec0_A Protease; HIV-2, inhibi 83.8 1.1 3.7E-05 33.4 3.9 25 61-87 10-34 (99)
44 3s8i_A Protein DDI1 homolog 1; 79.6 1.4 4.9E-05 35.6 3.5 30 56-87 21-50 (148)
45 2hah_A Protease, retropepsin; 79.5 1.7 5.7E-05 33.5 3.6 24 61-87 16-39 (116)
46 3liy_A Protease; hydrolase, hy 77.1 2.1 7.3E-05 32.5 3.5 27 61-87 12-41 (116)
47 3sqf_A Protease; folded monome 74.3 3.2 0.00011 31.7 3.9 25 61-87 11-35 (114)
48 3slz_A GAG-Pro-POL polyprotein 68.7 4.9 0.00017 31.6 3.9 26 60-87 23-48 (132)
49 3ka2_A [L-Ala51;Gly51']HIV-1 p 61.2 7.4 0.00025 33.0 3.9 25 61-87 10-34 (203)
50 2rsp_A RSV protease; hydrolase 58.7 7.9 0.00027 30.0 3.3 20 66-87 27-46 (124)
51 1lya_A Cathepsin D; lysosomal 46.4 17 0.00059 26.6 3.4 16 269-284 29-44 (97)
52 3ka2_A [L-Ala51;Gly51']HIV-1 p 37.9 29 0.00099 29.3 3.9 25 61-87 114-138 (203)
53 1b5f_A Protein (cardosin A); h 28.7 86 0.0029 26.9 5.7 30 58-87 188-225 (239)
54 1mpp_A Pepsin; hydrolase(acid 26.6 56 0.0019 30.1 4.3 43 217-284 5-49 (361)
55 3cms_A Chymosin B; hydrolase, 25.8 62 0.0021 29.2 4.4 16 269-284 30-45 (323)
56 3slz_A GAG-Pro-POL polyprotein 24.8 58 0.002 25.4 3.3 25 245-284 26-50 (132)
57 2hah_A Protease, retropepsin; 23.1 50 0.0017 25.1 2.6 30 238-283 11-40 (116)
58 3c9x_A Trichoderma reesei aspa 21.6 90 0.0031 28.2 4.6 17 269-285 31-47 (329)
59 1bxo_A Protein (penicillopepsi 21.4 66 0.0022 29.1 3.6 30 238-285 16-45 (323)
60 1lya_B Cathepsin D; lysosomal 20.5 89 0.003 26.7 4.1 31 58-88 99-136 (241)
61 1izd_A Aspartic proteinase; su 20.3 72 0.0024 28.9 3.6 30 238-285 16-45 (323)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=1e-58 Score=454.61 Aligned_cols=343 Identities=25% Similarity=0.485 Sum_probs=270.8
Q ss_pred CCCceEEeeeeeccccccccCCcccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCC
Q 039965 26 KNQTLFFPLKTQALAHYYNYRATANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSS 105 (419)
Q Consensus 26 ~~~~~~~pl~~~~~~~~~~~~~~~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT 105 (419)
...++.+||++... +..|+++|.||||||++.|+|||||+++||+|.+| .+|+|
T Consensus 5 ~~~~~~~pv~~d~~-----------------~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c---------~~Sst 58 (413)
T 3vla_A 5 RPSALVVPVKKDAS-----------------TLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN---------YVSST 58 (413)
T ss_dssp CCSEEEEEEEECTT-----------------TCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS---------CCCTT
T ss_pred CCccEEEEeeecCC-----------------CCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC---------CCCCC
Confidence 45678899998863 45699999999999999999999999999999965 48999
Q ss_pred cccccCCCCCCCCCCCCCC------CCCCCCCCCCCeeEEec-CCCCeeeeEEEEEEEEeCC---------CCCCCC---
Q 039965 106 YSPVPCNSPTCKIKTQDLP------VPASCDPKGLCRVTLTY-ADLTSTEGNLATETILIGG---------PARPGF--- 166 (419)
Q Consensus 106 ~~~~~c~~~~c~~~~~~~~------~~~~c~~~~~~~~~~~Y-~~gs~~~G~~~~D~v~~g~---------~~~~~~--- 166 (419)
|+.+.|.++.|...++.-. ....|. ++.|.|.+.| ++++.+.|.+++|+|+++. ..++++
T Consensus 59 ~~~v~C~s~~C~~~~~~~~~~c~s~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FG 137 (413)
T 3vla_A 59 YRPVRCRTSQCSLSGSIACGDCFNGPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFS 137 (413)
T ss_dssp CEECBTTSHHHHHTTCCEEECCSSCCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEE
T ss_pred cCccCCCcccccccccCCCcccccCCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEE
Confidence 9999999999986543100 012343 3579999999 4887899999999999972 234443
Q ss_pred ---------CCCCcceeeeccCCCCchhhhhcC-----CeeEEeecCC-CCCceEEeCCCCcc------CCCC-cccccc
Q 039965 167 ---------EDARTTGLMGMNRGSLSFITQMGF-----PKFSYCISGV-DSSGVLLFGDASFA------WLKP-LSYTPL 224 (419)
Q Consensus 167 ---------~~~~~~GIlGLg~~~~s~~~ql~~-----~~Fs~~l~~~-~~~G~l~fGg~d~~------~~g~-l~~~p~ 224 (419)
....++||||||++.+|+++||.. ++||+||.+. +.+|.|+||++|.. |.|+ +.|+|+
T Consensus 138 c~~~~~~~g~~~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl 217 (413)
T 3vla_A 138 CAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPL 217 (413)
T ss_dssp EECGGGGTTSCTTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEEC
T ss_pred CcccccccCcccccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeec
Confidence 123579999999999999999775 8999999874 36899999999863 5788 999999
Q ss_pred cccCCC--CCCCC---CeeEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhh-
Q 039965 225 VRISKP--LPYFD---RVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTK- 298 (419)
Q Consensus 225 ~~~~~~--~~~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~- 298 (419)
+..... .++.+ ..+|.|+|++|+|+++.+.++...+..+..+++++||||||++++||+++|++|+++|.+++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~ 297 (413)
T 3vla_A 218 LTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAA 297 (413)
T ss_dssp BCCSSCCSSSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHH
T ss_pred ccCCccccccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcc
Confidence 976421 01111 258999999999999999988877766555668899999999999999999999999998875
Q ss_pred -ccccccCCCccccccccccccccccCCC--CCCCCCeEEEEEcC--cEEEEcccceeEEecCccCCCCceEEEEEEcCC
Q 039965 299 -GILRVFDDPNFVFQGAMDLCYLIESTGP--SLPRLPIVSLMFSG--AEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSD 373 (419)
Q Consensus 299 -~~~~~~~~~~~~~~~~~~~C~~~~~~~~--~~~~~P~i~f~f~g--~~~~i~~~~y~~~~~~~~~~~~~~~C~~i~~~~ 373 (419)
.+.+. ... ..+..|+..++... ....+|+|+|+|+| ++|+|++++|+++. .++..|++|+...
T Consensus 298 ~~~~~~-~~~-----~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~------~~~~~Cl~~~~~~ 365 (413)
T 3vla_A 298 RNITRV-ASV-----APFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYI------NDNVVCLGVVDGG 365 (413)
T ss_dssp TTCCEE-CCC-----TTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEE------ETTEEEECEEEEE
T ss_pred cCCCcC-CCC-----CCCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEe------CCCcEEEEEEecC
Confidence 22111 111 13579998864210 01378999999997 89999999999985 3467899987754
Q ss_pred CCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 374 LLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 374 ~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
....+.||||+.|||++|+|||++++|||||++.
T Consensus 366 ~~~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~~ 399 (413)
T 3vla_A 366 SNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTL 399 (413)
T ss_dssp SSCSSSEEECHHHHTTEEEEEETTTTEEEEEEEG
T ss_pred CCcccceeEehhhhcCeEEEEECCCCEEEEEEec
Confidence 3333579999999999999999999999999854
No 2
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=7.1e-59 Score=451.00 Aligned_cols=291 Identities=23% Similarity=0.363 Sum_probs=242.5
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC------CCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT------VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDL 123 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~------~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~ 123 (419)
.+|.|+.+..|+++|+||||||+++|+|||||+++||+|..| |..|+.|||++|+||+...
T Consensus 53 ~~l~n~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~------------- 119 (383)
T 2x0b_A 53 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNG------------- 119 (383)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEE-------------
T ss_pred EeeeecCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECC-------------
Confidence 467888899999999999999999999999999999998876 4568999999999999864
Q ss_pred CCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCc-------
Q 039965 124 PVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLS------- 183 (419)
Q Consensus 124 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s------- 183 (419)
|.|.+.|++| ++.|.+++|+|++++.+++ + ....+|||||||++..+
T Consensus 120 -----------~~~~i~Yg~G-s~~G~~~~Dtv~ig~~~v~-~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~ 186 (383)
T 2x0b_A 120 -----------TELTLRYSTG-TVSGFLSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPI 186 (383)
T ss_dssp -----------EEEEEECSSC-EEEEEEEEEEEEETTEEEE-EEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCH
T ss_pred -----------cEEEEEcCCc-cEEEEEEeeEEEEcCceEE-EEEEEEEecCCcccccCCCceEeccCCCccccCCCCcH
Confidence 5899999999 5999999999999998777 6 23578999999998776
Q ss_pred ---hhhh--hcCCeeEEeecCCC-----CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEE
Q 039965 184 ---FITQ--MGFPKFSYCISGVD-----SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKV 252 (419)
Q Consensus 184 ---~~~q--l~~~~Fs~~l~~~~-----~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~ 252 (419)
+.+| +..++||+||++.. .+|+|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.
T Consensus 187 ~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~~~---------~~w~v~l~~i~v~~~~ 257 (383)
T 2x0b_A 187 FDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKT---------GVWQIQMKGVSVGSST 257 (383)
T ss_dssp HHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBSST---------TSCEEEECEEEESSCC
T ss_pred HHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcCCC---------ceEEEEEeEEEeCCce
Confidence 2344 44599999998753 2899999999987 8999999999864 4799999999999976
Q ss_pred eeCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCC
Q 039965 253 LNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLP 332 (419)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P 332 (419)
+. +..++.+|+||||+++++|.+++++|.+++.+. . .... +..+|+.. ..+|
T Consensus 258 ~~---------~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~-----~--~~g~-----~~v~C~~~-------~~~P 309 (383)
T 2x0b_A 258 LL---------CEDGCLALVDTGASYISGSTSSIEKLMEALGAK-----K--RLFD-----YVVKCNEG-------PTLP 309 (383)
T ss_dssp CB---------STTCEEEEECTTCSSEEECHHHHHHHHHHHTCE-----E--CSSC-----EEEEGGGT-------TTCC
T ss_pred EE---------cCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCc-----c--cCCc-----EEEecccc-------ccCc
Confidence 42 235678999999999999999999998876431 1 2222 24578765 5789
Q ss_pred eEEEEEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCCC--CCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 333 IVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLL--GIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 333 ~i~f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~--~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
+|+|+|+|.+++|++++|+++.. ..++..|+. |+..+.. ..+.||||++|||++|+|||++++|||||+++
T Consensus 310 ~i~f~~~g~~~~l~~~~yi~~~~----~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 310 DISFHLGGKEYTLTSADYVFQES----YSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp CEEEEETTEEEEECHHHHBCCCC----CCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCEEEEECHHHhEeecc----CCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 99999999999999999998741 123458994 8876432 34579999999999999999999999999974
No 3
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=1.9e-57 Score=440.28 Aligned_cols=291 Identities=24% Similarity=0.365 Sum_probs=239.7
Q ss_pred cccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 039965 48 TANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDL 123 (419)
Q Consensus 48 ~~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~ 123 (419)
...+|.|+.|..|+++|+||||||+++|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 46 ~~~~l~n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~------------- 112 (370)
T 3psg_A 46 GDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS------------- 112 (370)
T ss_dssp CCCTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEE-------------
T ss_pred ceecceeccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECC-------------
Confidence 34689999999999999999999999999999999999998776 6778999999999999864
Q ss_pred CCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch------
Q 039965 124 PVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF------ 184 (419)
Q Consensus 124 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~------ 184 (419)
|.|.+.|++| .+.|.+++|+|++++.+++++ ....++||||||++..+.
T Consensus 113 -----------~~~~i~Yg~G-s~~G~~~~Dtv~ig~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~ 180 (370)
T 3psg_A 113 -----------QELSITYGTG-SMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPV 180 (370)
T ss_dssp -----------EEEEEESSSC-EEEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCH
T ss_pred -----------cEEEEEeCCc-eEEEEEEEEEEeeCCcccCCeEEEEEEeecccccccCCccceeccCCccccccCCCCH
Confidence 5899999999 599999999999999877655 224579999999987652
Q ss_pred ----hhh--hcCCeeEEeecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCC
Q 039965 185 ----ITQ--MGFPKFSYCISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLP 256 (419)
Q Consensus 185 ----~~q--l~~~~Fs~~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~ 256 (419)
.+| +..++||+||.+.+ .+|.|+|||+|++ |.|++.|+|+... .+|.|++++|+|+++.+..
T Consensus 181 ~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~~~---------~~w~v~l~~i~v~g~~~~~- 250 (370)
T 3psg_A 181 FDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVE---------GYWQITLDSITMDGETIAC- 250 (370)
T ss_dssp HHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEE---------TTEEEEECEEESSSSEEEC-
T ss_pred HHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeeccccc---------ceeEEEEeEEEECCEEEec-
Confidence 233 44599999998753 6899999999987 8999999999875 3799999999999987642
Q ss_pred CcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEE
Q 039965 257 KSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSL 336 (419)
Q Consensus 257 ~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f 336 (419)
..++.+++||||+++++|.+++++|.+++.+. . .... .+..+|... ..+|+|+|
T Consensus 251 --------~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~-----~-~~~g-----~~~v~C~~~-------~~lP~i~f 304 (370)
T 3psg_A 251 --------SGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS-----E-NSDG-----EMVISCSSI-------DSLPDIVF 304 (370)
T ss_dssp --------TTCEEEEECTTCCSEEEEHHHHHHHHHHTTCE-----E-CTTC-----CEECCGGGG-------GGCCCEEE
T ss_pred --------CCCceEEEcCCCCcEECCHHHHHHHHHHhCCc-----c-cCCC-----cEEEECCCc-------ccCCcEEE
Confidence 34578999999999999999999997766321 1 1111 125577665 57899999
Q ss_pred EEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCCC--CCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 337 MFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLL--GIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 337 ~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~--~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
+|+|.+++|++++|+++. + ..|+. |+..+.. .++.||||++|||++|+|||++++|||||+++
T Consensus 305 ~~~g~~~~l~~~~yi~~~-------~-~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 305 TIDGVQYPLSPSAYILQD-------D-DSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp EETTEEEEECHHHHEEEC-------S-SCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EECCEEEEECHHHhcccC-------C-CEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 999999999999999972 2 25995 8775431 23469999999999999999999999999975
No 4
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=1.3e-56 Score=440.16 Aligned_cols=322 Identities=24% Similarity=0.419 Sum_probs=246.6
Q ss_pred cceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCC------CCCCCCC
Q 039965 56 HNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQD------LPVPASC 129 (419)
Q Consensus 56 ~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~------~~~~~~c 129 (419)
.+..|+++|.||||+|++.|+|||||+++||+|.+| .+|+|++.+.|.+..|...++. -+....|
T Consensus 19 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~---------~~Sst~~~~~C~s~~C~~~~~~~c~~c~~~~~s~~ 89 (403)
T 3aup_A 19 STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ---------YSSKTYQAPFCHSTQCSRANTHQCLSCPAASRPGC 89 (403)
T ss_dssp TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC---------CCCSSCBCCCTTBHHHHHTTCCCEEECSSSCBTTB
T ss_pred CCceEEEEEECCCCCceeEEEEECCCCceeECCCCC---------CCCCCCCccCCCCccccCccccCccccCCCCCCCC
Confidence 456699999999999999999999999999999863 5899999999999889865431 0111235
Q ss_pred CCCCCCeeEEecC-CCCeeeeEEEEEEEEeCC-----------CCCCCC-------C------CCCcceeeeccCCCCch
Q 039965 130 DPKGLCRVTLTYA-DLTSTEGNLATETILIGG-----------PARPGF-------E------DARTTGLMGMNRGSLSF 184 (419)
Q Consensus 130 ~~~~~~~~~~~Y~-~gs~~~G~~~~D~v~~g~-----------~~~~~~-------~------~~~~~GIlGLg~~~~s~ 184 (419)
. ++.|.|.+.|+ +++.+.|.+++|+|++++ .+++++ . ....+||||||++.+++
T Consensus 90 ~-~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~ 168 (403)
T 3aup_A 90 H-KNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISL 168 (403)
T ss_dssp C-SSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSSSTTSH
T ss_pred C-CCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCCCCcCH
Confidence 3 35799999998 777999999999999987 344443 1 23679999999999999
Q ss_pred hhhhcC-----CeeEEeecCC-CCCceEEeCCCCcc-C--C-C-----CcccccccccCCCCCCCCCeeEEEEeeeEEEC
Q 039965 185 ITQMGF-----PKFSYCISGV-DSSGVLLFGDASFA-W--L-K-----PLSYTPLVRISKPLPYFDRVAYSVQLEGIKVG 249 (419)
Q Consensus 185 ~~ql~~-----~~Fs~~l~~~-~~~G~l~fGg~d~~-~--~-g-----~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~ 249 (419)
+.|++. ++||+||.+. +..|.|+||| |++ | . | ++.|+|++..+ ..+|.|++++|+|+
T Consensus 169 ~~ql~~~~~~~~~FS~~L~~~~~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~-------~~~y~v~l~~i~v~ 240 (403)
T 3aup_A 169 PNQLASHFGLQRQFTTCLSRYPTSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITL-------QGEYNVRVNSIRIN 240 (403)
T ss_dssp HHHHHHHHTCCSEEEEECCSCTTSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECT-------TSCEEECEEEEEET
T ss_pred HHHHHhhcCCCCeEEEEcCCCCCCCeeEEECC-CchhccccccccccCceeecccccCC-------CCcceEEEEEEEEC
Confidence 988754 8999999874 4789999999 876 7 5 5 99999999863 24799999999999
Q ss_pred CEEe-eCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCC
Q 039965 250 SKVL-NLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSL 328 (419)
Q Consensus 250 ~~~~-~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 328 (419)
++.+ .++...+..+..+...+||||||++++||+++|++|.++|.+++........... +..|+..+ . .
T Consensus 241 g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~------~~~c~~c~--~--~ 310 (403)
T 3aup_A 241 QHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAP------FGLCFNSN--K--I 310 (403)
T ss_dssp TEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTT------CSCEECGG--G--C
T ss_pred CEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCC------CCceEECC--C--c
Confidence 9988 7666555444445677999999999999999999999999776543222111111 23465432 1 2
Q ss_pred CCCCeEEEEEcCc---EEEEcccceeEEecCccCCCCceEEEEEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEE--
Q 039965 329 PRLPIVSLMFSGA---EMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGF-- 403 (419)
Q Consensus 329 ~~~P~i~f~f~g~---~~~i~~~~y~~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGf-- 403 (419)
..+|+|+|+|+|. +|+|++++|+++. .++..|++|+..+....+.||||+.|||++|+|||++++||||
T Consensus 311 ~~~P~i~f~f~g~~~~~~~l~~~~y~~~~------~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGf~A 384 (403)
T 3aup_A 311 NAYPSVDLVMDKPNGPVWRISGEDLMVQA------QPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFST 384 (403)
T ss_dssp CCCCCEEEEESSTTCCEEEECHHHHEEEC---------CEEECEEECCSCCSSSEEECHHHHTTSCEEEETTTTEEEEES
T ss_pred CcCCcEEEEEcCCCceEEEEcccceEEEc------CCCeEEEEEEcCCCCCCCcEEEChHHhcCeEEEEECCCCEEEEec
Confidence 4789999999974 9999999999984 3456899988765433357999999999999999999999999
Q ss_pred -----EcCCCCcc
Q 039965 404 -----AEVRCDIA 411 (419)
Q Consensus 404 -----a~~~c~~~ 411 (419)
++++|+..
T Consensus 385 ~~~~~~~~~C~~~ 397 (403)
T 3aup_A 385 SSLHSHGVKCADL 397 (403)
T ss_dssp SCGGGGTCCGGGS
T ss_pred ccccccCCCcccc
Confidence 67778654
No 5
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-56 Score=432.58 Aligned_cols=296 Identities=24% Similarity=0.366 Sum_probs=240.5
Q ss_pred ccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 039965 49 ANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLP 124 (419)
Q Consensus 49 ~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~ 124 (419)
..+|.++.+..|+++|.||||+|++.|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 14 ~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~-------------- 79 (351)
T 1tzs_A 14 KEPLINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPG-------------- 79 (351)
T ss_dssp CCTTGGGSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCS--------------
T ss_pred ceeceecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECC--------------
Confidence 4567777888999999999999999999999999999998876 5668999999999998753
Q ss_pred CCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCc--------
Q 039965 125 VPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLS-------- 183 (419)
Q Consensus 125 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s-------- 183 (419)
|.|.+.|++| .+.|.+++|+|++++.+++++ ....++||||||++..+
T Consensus 80 ----------~~~~i~Yg~G-s~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~ 148 (351)
T 1tzs_A 80 ----------QSFSIQYGTG-SLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVF 148 (351)
T ss_dssp ----------CEEEEESSSC-EEEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGSGGGCCCHH
T ss_pred ----------CEEEEEeCCC-CeEEEEEEeEEEECCeEECCeEEEEEEeccccccccCCCceEEecCCccccccCCCcHH
Confidence 6899999999 589999999999998776654 12467999999998765
Q ss_pred --hhhh--hcCCeeEEeecCCC---CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeC
Q 039965 184 --FITQ--MGFPKFSYCISGVD---SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNL 255 (419)
Q Consensus 184 --~~~q--l~~~~Fs~~l~~~~---~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~ 255 (419)
+.+| +..++||+||.+.. ..|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.+..
T Consensus 149 ~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~~~v~l~~i~v~~~~~~~ 219 (351)
T 1tzs_A 149 DNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTKQ---------AYWQIALDNIQVGGTVMFC 219 (351)
T ss_dssp HHHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECSEE---------TTEEEEEEEEEETTEEEEC
T ss_pred HHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecCCC---------ceEEEEeCEEEECCceEEc
Confidence 2333 44599999998764 2899999999987 8999999999864 3799999999999987532
Q ss_pred CCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEE
Q 039965 256 PKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVS 335 (419)
Q Consensus 256 ~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~ 335 (419)
..+..+||||||++++||.+++++|.+++.+.. . . .. +..+|+.. ..+|+|+
T Consensus 220 ---------~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~-----~-~-g~-----~~~~C~~~-------~~~P~i~ 271 (351)
T 1tzs_A 220 ---------SEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAP-----V-D-GE-----YAVECANL-------NVMPDVT 271 (351)
T ss_dssp ---------TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-----C-S-SS-----EEECGGGG-------GGSCCEE
T ss_pred ---------CCCceEEeccCCcceeCCHHHHHHHHHHhCCcc-----c-C-Ce-----EEEeCCCC-------ccCCcEE
Confidence 345679999999999999999999987764311 1 1 11 24578765 4789999
Q ss_pred EEEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCCC--CCceeeeeccceeeeEEEEECCCCEEEEEcCCCCc
Q 039965 336 LMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLL--GIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDI 410 (419)
Q Consensus 336 f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~--~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~~ 410 (419)
|+|+|.+++|++++|+++.. ..++..|+. |+..+.. ..+.||||++|||++|+|||++++|||||+++|..
T Consensus 272 f~f~g~~~~i~~~~yi~~~~----~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~s 345 (351)
T 1tzs_A 272 FTINGVPYTLSPTAYTLLDF----VDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPWS 345 (351)
T ss_dssp EEETTEEEEECTTTSEECC---------CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC---
T ss_pred EEECCEEEEECHHHhEeecc----CCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCccc
Confidence 99999999999999998741 112457995 8875421 23579999999999999999999999999999975
No 6
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=7e-57 Score=429.57 Aligned_cols=287 Identities=18% Similarity=0.288 Sum_probs=238.3
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPV 125 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~ 125 (419)
.+|.|+.+..|+++|+||||+|++.|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 6 ~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~--------------- 70 (323)
T 3cms_A 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLG--------------- 70 (323)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEE---------------
T ss_pred eeeEeccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCCCCCCCccCCCeEECC---------------
Confidence 456677788899999999999999999999999999999887 6678999999999999864
Q ss_pred CCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------C------CCCcceeeeccCCCCc---------
Q 039965 126 PASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------E------DARTTGLMGMNRGSLS--------- 183 (419)
Q Consensus 126 ~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------~------~~~~~GIlGLg~~~~s--------- 183 (419)
|.|.+.|++| .+.|.+++|+|++++.+++++ . ....+||||||++..+
T Consensus 71 ---------~~~~i~Yg~G-s~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~ 140 (323)
T 3cms_A 71 ---------KPLSIHYGTG-SMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFD 140 (323)
T ss_dssp ---------EEEEEEETTE-EEEEEEEEEEEEETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHH
T ss_pred ---------cEEEEEeCCC-CeEEEEEEEEEEECCeEEeccEEEEEEecccccccccCCceEEecCcchhhccCCCCHHH
Confidence 5899999999 589999999999999877665 1 1367999999998765
Q ss_pred -hhhh--hcCCeeEEeecCCCCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcc
Q 039965 184 -FITQ--MGFPKFSYCISGVDSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSV 259 (419)
Q Consensus 184 -~~~q--l~~~~Fs~~l~~~~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 259 (419)
+.+| +..++||+||.+.+..|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.+..
T Consensus 141 ~l~~q~~i~~~~FS~~l~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~~~v~l~~i~v~~~~~~~---- 207 (323)
T 3cms_A 141 NMMNRHLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGSLHWVPVTVQ---------QYWQFTVDSVTISGVVVAC---- 207 (323)
T ss_dssp HHHHTTCSSSSEEEEECCTTSSCEEEEESCCCGGGEEEEEEEEECSSB---------TTBEEEEEEEEETTEEEES----
T ss_pred HHHHCCCCCCCEEEEEECCCCCCEEEEECCCChhhccCceEEEECccC---------CeEEEEEeeEEECCEEeec----
Confidence 2344 445999999988655699999999987 8999999999864 3799999999999988753
Q ss_pred cccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEc
Q 039965 260 FIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFS 339 (419)
Q Consensus 260 ~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~ 339 (419)
..+..++|||||+++++|++++++|.+++.+. . ..... +..+|+.. ..+|+|+|+|+
T Consensus 208 -----~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~-----~-~~~g~-----~~~~C~~~-------~~~P~i~f~f~ 264 (323)
T 3cms_A 208 -----EGGCQAILDTGTSKLVGPSSDILNIQQAIGAT-----Q-NQYGE-----FDIDCDNL-------SYMPTVVFEIN 264 (323)
T ss_dssp -----TTCEEEEECTTCCSEEECHHHHHHHHHHHTCE-----E-ETTTE-----EEECTTCT-------TTSCCEEEEET
T ss_pred -----CCCcEEEEecCCccEeCCHHHHHHHHHHhCCe-----e-cCCCc-----EEEECCCC-------ccCceEEEEEC
Confidence 23467999999999999999999998876421 1 11111 24567654 57899999999
Q ss_pred CcEEEEcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 340 GAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 340 g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
|.+++|++++|+++. +..|+. |+..+ ..+.||||++|||++|+|||++++|||||+++
T Consensus 265 g~~~~i~~~~y~~~~--------~~~C~~~i~~~~--~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 265 GKMYPLTPSAYTSQD--------QGFCTSGFQSEN--HSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp TEEEEECHHHHEEEE--------TTEEEESEEEC-----CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CEEEEECHHHhccCC--------CCEEEEEEEeCC--CCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 999999999999872 357995 88765 23479999999999999999999999999975
No 7
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=1.4e-56 Score=427.33 Aligned_cols=288 Identities=19% Similarity=0.318 Sum_probs=235.7
Q ss_pred ccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 039965 49 ANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLP 124 (419)
Q Consensus 49 ~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~ 124 (419)
..+|.|+.|..|+++|+||||+|+++|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 2 ~~~l~n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~-------------- 67 (320)
T 4aa9_A 2 REPLTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLG-------------- 67 (320)
T ss_dssp ------CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEE--------------
T ss_pred CccceeccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCC--------------
Confidence 3568888899999999999999999999999999999999876 5568999999999999874
Q ss_pred CCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCc------hh
Q 039965 125 VPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLS------FI 185 (419)
Q Consensus 125 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s------~~ 185 (419)
|.|.+.|++| .+.|.+++|+|++++.+++++ .....+||||||++..+ ++
T Consensus 68 ----------~~~~i~Yg~g-s~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~ 136 (320)
T 4aa9_A 68 ----------KPLSIHYGTG-SMEGFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVF 136 (320)
T ss_dssp ----------EEEEEEETTE-EEEEEEEEEEEEETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCCHH
T ss_pred ----------cEEEEEECCc-EEEEEEEEEEEEECCEeecCeEEEEEEEcccccccccCcccEEecCcccccccCCCCHH
Confidence 5899999999 489999999999999877765 12457999999987654 33
Q ss_pred hh------hcCCeeEEeecCCCCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCc
Q 039965 186 TQ------MGFPKFSYCISGVDSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKS 258 (419)
Q Consensus 186 ~q------l~~~~Fs~~l~~~~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~ 258 (419)
++ +..++||+||.+....|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.+..
T Consensus 137 ~~l~~~g~i~~~~Fs~~l~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~w~v~l~~i~v~~~~~~~--- 204 (320)
T 4aa9_A 137 DNMMDRHLVARDLFSVYMDRNGQGSMLTLGAIDPSYYTGSLHWVPVTLQ---------QYWQFTVDSVTINGVAVAC--- 204 (320)
T ss_dssp HHHHHTTCSSSSEEEEECCSSSSCCEEEETCCCGGGEEEEEEEEECSSB---------TTBEEEECEEEETTEEEES---
T ss_pred HHHHhCCCCCCceEEEEeCCCCCCeEEEEcccCHHHccCceEEEEcccC---------CceEEEEeEEEECCEEecc---
Confidence 33 445899999997657899999999987 8999999999764 4799999999999988753
Q ss_pred ccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEE
Q 039965 259 VFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMF 338 (419)
Q Consensus 259 ~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f 338 (419)
..+..++|||||++++||.+++++|.+++.+.. ..... +..+|+.. ..+|+|+|+|
T Consensus 205 ------~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~------~~~g~-----~~~~C~~~-------~~~p~i~f~f 260 (320)
T 4aa9_A 205 ------VGGCQAILDTGTSVLFGPSSDILKIQMAIGATE------NRYGE-----FDVNCGNL-------RSMPTVVFEI 260 (320)
T ss_dssp ------TTCEEEEECTTCSSEEEEHHHHHHHHHHTTCEE------CTTSC-----EEECGGGG-------GGCCCEEEEE
T ss_pred ------CCCcEEEEECCCCcEECCHHHHHHHHHHhCCcc------cCCCc-----EEEeCCCC-------CcCceEEEEE
Confidence 234679999999999999999999987663211 11111 24577665 5789999999
Q ss_pred cCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 339 SGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 339 ~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
+|.+++|++++|+.+ ++..|+. |+.... .+.||||++|||++|+|||++++|||||+++
T Consensus 261 ~g~~~~l~~~~y~~~--------~~~~C~~~i~~~~~--~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 261 NGRDYPLSPSAYTSK--------DQGFCTSGFQGDNN--SELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp TTEEEEECHHHHEEE--------ETTEEEESEEEETT--CCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEECHHHhccC--------CCCeEEEEEEcCCC--CCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 999999999999976 2457995 877432 2469999999999999999999999999975
No 8
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=1.6e-55 Score=420.51 Aligned_cols=286 Identities=22% Similarity=0.408 Sum_probs=237.3
Q ss_pred ccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCC
Q 039965 51 KLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVP 126 (419)
Q Consensus 51 ~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~ 126 (419)
+|.++.+..|+++|+||||+|++.|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 5 ~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~---------------- 68 (324)
T 1am5_A 5 QMKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETG---------------- 68 (324)
T ss_dssp EEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEEE----------------
T ss_pred eeecCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCCCcCCCccCCCeEeCC----------------
Confidence 45556678899999999999999999999999999999887 5568899999999998864
Q ss_pred CCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch------h--
Q 039965 127 ASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF------I-- 185 (419)
Q Consensus 127 ~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~------~-- 185 (419)
|.|.+.|++| .+.|.+++|+|++++.+++++ .....+||||||++..+. +
T Consensus 69 --------~~~~i~Yg~G-s~~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~ 139 (324)
T 1am5_A 69 --------KTVDLTYGTG-GMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDN 139 (324)
T ss_dssp --------EEEEEECSSC-EEEEEEEEEEEESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHH
T ss_pred --------cEEEEEECCC-CeEEEEEECceeECCcEEcccEEEEEEecccccccCCCCceEEecCCccccccCCCchHHh
Confidence 5899999999 569999999999999887665 124679999999987653 2
Q ss_pred --hh--hcCCeeEEeecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcc
Q 039965 186 --TQ--MGFPKFSYCISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSV 259 (419)
Q Consensus 186 --~q--l~~~~Fs~~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 259 (419)
+| +..++||+||.+.+ ..|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.+..
T Consensus 140 l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~~~v~l~~i~v~~~~~~~---- 206 (324)
T 1am5_A 140 MGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTAE---------KYWQVALDGITVNGQTAAC---- 206 (324)
T ss_dssp HHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSCCEEEEEEEE---------TTEEEEECEEEETTEECCC----
T ss_pred HHhcCCCCCCEEEEEecCCCCCCcEEEECccCHHHcCCceEEEecCCC---------cEEEEEEeEEEECCceeec----
Confidence 33 44599999998753 5899999999987 8999999999864 3799999999999987531
Q ss_pred cccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEc
Q 039965 260 FIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFS 339 (419)
Q Consensus 260 ~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~ 339 (419)
.+ ..++|||||++++||++++++|.+++.+. ..... +..+|+.. ..+|+|+|+|+
T Consensus 207 -----~~-~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-------~~~g~-----~~~~C~~~-------~~~P~i~f~f~ 261 (324)
T 1am5_A 207 -----EG-CQAIVDTGTSKIVAPVSALANIMKDIGAS-------ENQGE-----MMGNCASV-------QSLPDITFTIN 261 (324)
T ss_dssp -----CC-EEEEECTTCSSEEECTTTHHHHHHHHTCE-------ECCCC-----EECCTTSS-------SSSCCEEEEET
T ss_pred -----cC-ceEEEecCCccEECCHHHHHHHHHHhCCc-------ccCCc-----EEEeCCCc-------ccCCcEEEEEC
Confidence 22 67999999999999999999998876432 11111 24577654 57899999999
Q ss_pred CcEEEEcccceeEEecCccCCCCceEEEE-EEcCCC--CCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 340 GAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDL--LGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 340 g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
|.+++|++++|+++. +..|+. |+..+. ...+.||||++|||++|+|||++++|||||+++
T Consensus 262 g~~~~i~~~~y~~~~--------~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 262 GVKQPLPPSAYIEGD--------QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp TEEEEECHHHHEEES--------SSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred CEEEEECHHHhcccC--------CCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 999999999999872 457994 877642 123589999999999999999999999999975
No 9
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=1.2e-55 Score=422.23 Aligned_cols=288 Identities=22% Similarity=0.350 Sum_probs=237.5
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPV 125 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~ 125 (419)
.+|.++.+..|+++|+||||+|++.|+|||||+++||+|..| |..++.|||++|+|++...
T Consensus 5 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~--------------- 69 (329)
T 1dpj_A 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANG--------------- 69 (329)
T ss_dssp EECEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEE---------------
T ss_pred eeeeecCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEECC---------------
Confidence 456667788899999999999999999999999999999887 5568899999999998754
Q ss_pred CCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch--------
Q 039965 126 PASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF-------- 184 (419)
Q Consensus 126 ~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~-------- 184 (419)
|.|.+.|++| .+.|.+++|+|++++.+++++ .....+||||||+...++
T Consensus 70 ---------~~~~i~Yg~G-s~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~ 139 (329)
T 1dpj_A 70 ---------TEFAIQYGTG-SLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFY 139 (329)
T ss_dssp ---------EEEEEEETTE-EEEEEEEEEEEEETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHH
T ss_pred ---------cEEEEEECCc-eEEEEEEEEEEEECCeEECCeEEEEEEecCccccccCCcceEEEeCCchhhccCCCCHHH
Confidence 6899999999 799999999999999877665 134689999999987653
Q ss_pred --hhh--hcCCeeEEeecCCC----CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeC
Q 039965 185 --ITQ--MGFPKFSYCISGVD----SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNL 255 (419)
Q Consensus 185 --~~q--l~~~~Fs~~l~~~~----~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~ 255 (419)
.+| +..++||+||.+.. ..|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.+..
T Consensus 140 ~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~~~v~l~~i~v~~~~~~~ 210 (329)
T 1dpj_A 140 NAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRK---------AYWEVKFEGIGLGDEYAEL 210 (329)
T ss_dssp HHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECSSB---------TTBEEEEEEEEETTEEEEC
T ss_pred HHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcCCC---------ceEEEEeeeEEECCeEecC
Confidence 334 45699999997642 4799999999987 8999999999864 3799999999999988742
Q ss_pred CCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEE
Q 039965 256 PKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVS 335 (419)
Q Consensus 256 ~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~ 335 (419)
.+..++|||||++++||++++++|.+++.+. ...... +..+|+.. ..+|+|+
T Consensus 211 ----------~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~------~~~~g~-----~~~~C~~~-------~~~P~i~ 262 (329)
T 1dpj_A 211 ----------ESHGAAIDTGTSLITLPSGLAEMINAEIGAK------KGWTGQ-----YTLDCNTR-------DNLPDLI 262 (329)
T ss_dssp ----------SSCEEEECTTCSCEEECHHHHHHHHHHHTCE------ECTTSS-----EEECGGGG-------GGCCCEE
T ss_pred ----------CCccEEeeCCCCcEECCHHHHHHHHHHhCCc------cCCCCe-----EEEECCCC-------CcCCcEE
Confidence 3467999999999999999999998876421 111111 13356543 5789999
Q ss_pred EEEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCC--CCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 336 LMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDL--LGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 336 f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
|+|+|.+++|++++|+++. . ..|+. |+..+. ...+.||||++|||++|+|||++++|||||+++
T Consensus 263 f~f~g~~~~i~~~~y~~~~------~--~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 263 FNFNGYNFTIGPYDYTLEV------S--GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp EEETTEEEEECTTTSEEEE------T--TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEECCEEEEECHHHhEecC------C--CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 9999999999999999984 2 47994 877532 123589999999999999999999999999975
No 10
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=2.2e-55 Score=425.82 Aligned_cols=298 Identities=19% Similarity=0.304 Sum_probs=242.5
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC-----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT-----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLP 124 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~-----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~ 124 (419)
.+|.++.+..|+++|+||||+|++.|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 10 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~-------------- 75 (361)
T 1mpp_A 10 PGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETD-------------- 75 (361)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEE--------------
T ss_pred EEeecCCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCCCcCCCccCCceEecC--------------
Confidence 345555677899999999999999999999999999998765 4457899999999998864
Q ss_pred CCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC---------C---------CCCcceeeeccCCCCchh-
Q 039965 125 VPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF---------E---------DARTTGLMGMNRGSLSFI- 185 (419)
Q Consensus 125 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~---------~---------~~~~~GIlGLg~~~~s~~- 185 (419)
|.|.+.|++|+ +.|.+++|+|++++.+++++ . ....+||||||++..+..
T Consensus 76 ----------~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ 144 (361)
T 1mpp_A 76 ----------YNLNITYGTGG-ANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAME 144 (361)
T ss_dssp ----------EEEEEECSSCE-EEEEEEEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHH
T ss_pred ----------CeEEEEECCce-EEEEEEEEEEEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCCccccccc
Confidence 58999999995 89999999999999877654 1 235899999999866532
Q ss_pred ---------------hh--hcCCeeEEeecCCCCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEE
Q 039965 186 ---------------TQ--MGFPKFSYCISGVDSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIK 247 (419)
Q Consensus 186 ---------------~q--l~~~~Fs~~l~~~~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~ 247 (419)
+| +..++||+||.+....|.|+|||+|++ |.|++.|+|+...... ..+|.|.+++|+
T Consensus 145 ~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~-----~~~~~v~l~~i~ 219 (361)
T 1mpp_A 145 AEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGG-----YFFWDAPVTGVK 219 (361)
T ss_dssp HHHSCCCCCHHHHHHHTTSSSSSEEEEECCCSSSEEEEEESSCCGGGBSSCCEEEECEEETTE-----EEEEEEEEEEEE
T ss_pred ccccccCCCHHHHHHHcCCCCCcEEEEEecCCCCCcEEEEecCChhhcCCceEEEEcccCCCc-----eeEEEEEEeEEE
Confidence 23 445999999987546899999999987 8999999999876410 138999999999
Q ss_pred ECCEEeeCCCcccccCCCCCCcEE-EecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCC
Q 039965 248 VGSKVLNLPKSVFIPDHTGAGQTM-VDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGP 326 (419)
Q Consensus 248 v~~~~~~~~~~~~~~~~~~~~~~i-iDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 326 (419)
|+++.+.. ..+..+| |||||++++||++++++|.+++.+... . .... +..+|+..
T Consensus 220 v~~~~~~~---------~~~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~~----~-~~g~-----~~~~C~~~----- 275 (361)
T 1mpp_A 220 IDGSDAVS---------FDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDAT----E-SQQG-----YTVPCSKY----- 275 (361)
T ss_dssp ETTEEEEE---------EEEEEEEEEETTCCSEEEEHHHHHHHHHHHCTTCE----E-ETTE-----EEEEHHHH-----
T ss_pred ECCeeecc---------CCCCEEEEECCCCCceeCCHHHHHHHHHHhCCccc----C-CCCc-----EEEECCCc-----
Confidence 99987642 1235799 999999999999999999887754321 1 1111 25678765
Q ss_pred CCCCC-CeEEEEE--c-----CcEEEEcccceeEEecCccCCCCceEEE-EEEcCCCCCCceeeeeccceeeeEEEEECC
Q 039965 327 SLPRL-PIVSLMF--S-----GAEMSVSGERLLYRVPGLSRGRDSVYCF-TFGNSDLLGIEAFVIGHHHQQNLWVEFDLI 397 (419)
Q Consensus 327 ~~~~~-P~i~f~f--~-----g~~~~i~~~~y~~~~~~~~~~~~~~~C~-~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~ 397 (419)
..+ |+|+|+| + |.+++|++++|+++.. .++..|+ +|+... .+.||||++|||++|+|||++
T Consensus 276 --~~~~p~i~f~f~~g~~~~~g~~~~i~~~~y~~~~~-----~~~~~C~~~i~~~~---~~~~iLG~~fl~~~yvvfD~~ 345 (361)
T 1mpp_A 276 --QDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVD-----KSGETCMFIVLPDG---GNQFIVGNLFLRFFVNVYDFG 345 (361)
T ss_dssp --TTCCCEEEEEEECTTCSSCEEEEEEEGGGGEEECS-----SSSCEEEESEEEES---SSCCEEEHHHHTTEEEEEETT
T ss_pred --ccCCCcEEEEEEcCCcCCCCeEEEECHHHhEEecC-----CCCCeeEEEEEeCC---CCCEEEChHHhccEEEEEECC
Confidence 467 9999999 7 8999999999999851 2356899 588752 247999999999999999999
Q ss_pred CCEEEEEcCCCCcc
Q 039965 398 NSRVGFAEVRCDIA 411 (419)
Q Consensus 398 ~~riGfa~~~c~~~ 411 (419)
++|||||+++|+..
T Consensus 346 ~~~igfa~~~~~~~ 359 (361)
T 1mpp_A 346 KNRIGFAPLASGYE 359 (361)
T ss_dssp TTEEEEEEBCTTTC
T ss_pred CCEEEEEEcccCCC
Confidence 99999999999854
No 11
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=2.1e-55 Score=420.64 Aligned_cols=289 Identities=23% Similarity=0.390 Sum_probs=238.3
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPV 125 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~ 125 (419)
.+|. +.+..|+++|.||||+|++.|+|||||+++||+|..| |..++.|||++|+|++...
T Consensus 5 ~~l~-~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~--------------- 68 (329)
T 1htr_B 5 EPMA-YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNG--------------- 68 (329)
T ss_dssp CGGG-GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEE---------------
T ss_pred eeeE-EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCCCcCCCccCCCeEECC---------------
Confidence 4566 7788899999999999999999999999999999887 5568999999999998864
Q ss_pred CCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch--------
Q 039965 126 PASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF-------- 184 (419)
Q Consensus 126 ~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~-------- 184 (419)
|.|.+.|++| .+.|.+++|+|++++.+++++ .....+||||||++..+.
T Consensus 69 ---------~~~~i~Yg~g-s~~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~ 138 (329)
T 1htr_B 69 ---------QTFSLQYGSG-SLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQ 138 (329)
T ss_dssp ---------EEEEEEETTE-EEEEEEEEEEEEETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTTCCSHHH
T ss_pred ---------cEEEEEeCCC-CeEEEEEeeeEEEcceEECceEEEEEEEccccccccCCCceEEecCCCcccccCCCCHHH
Confidence 5899999999 569999999999998877654 124679999999987753
Q ss_pred --hhh--hcCCeeEEeecCCC-C-CceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCC
Q 039965 185 --ITQ--MGFPKFSYCISGVD-S-SGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPK 257 (419)
Q Consensus 185 --~~q--l~~~~Fs~~l~~~~-~-~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 257 (419)
.+| +..++||+||.+.+ . .|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.+..
T Consensus 139 ~l~~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~~~v~l~~i~v~~~~~~~-- 207 (329)
T 1htr_B 139 GMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQE---------LYWQIGIEEFLIGGQASGW-- 207 (329)
T ss_dssp HHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEEEEEEEBCSS---------SSCEEEECEEEETTEECCT--
T ss_pred HHHhcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHHHcCCceEEEECCCC---------ceEEEEEeEEEECCceeee--
Confidence 233 44599999998764 2 799999999987 8999999999864 4799999999999987531
Q ss_pred cccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEE
Q 039965 258 SVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLM 337 (419)
Q Consensus 258 ~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~ 337 (419)
+..+..++|||||++++||++++++|.+++.+.. ..... +..+|+.. ..+|+|+|+
T Consensus 208 ------~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~------~~~g~-----~~~~C~~~-------~~~P~i~f~ 263 (329)
T 1htr_B 208 ------CSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQE------DEYGQ-----FLVNCNSI-------QNLPSLTFI 263 (329)
T ss_dssp ------TTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEE------CTTSC-----EEECGGGG-------GGSCCEEEE
T ss_pred ------cCCCceEEEecCCccEECCHHHHHHHHHHhCCee------cCCCe-----EEEeCCCc-------ccCCcEEEE
Confidence 1335689999999999999999999988764321 11111 24578765 478999999
Q ss_pred EcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCC--CCCc-eeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 338 FSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDL--LGIE-AFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 338 f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~--~~~~-~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
|+|.+++|++++|+++. . + .|+. |+..+. ...+ .||||++|||++|+|||++++|||||+++
T Consensus 264 f~g~~~~i~~~~y~~~~------~-g-~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 264 INGVEFPLPPSSYILSN------N-G-YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp ETTEEEEECHHHHEEEC------S-S-CEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ECCEEEEECHHHhcccC------C-C-EEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 99999999999999984 2 3 8994 876542 1234 79999999999999999999999999975
No 12
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=3.4e-55 Score=421.52 Aligned_cols=292 Identities=23% Similarity=0.354 Sum_probs=240.2
Q ss_pred ccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC------CCCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 039965 49 ANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT------VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQD 122 (419)
Q Consensus 49 ~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~------~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~ 122 (419)
..+|.++.+..|+++|+||||+|+++|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 9 ~~~l~n~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~------------ 76 (341)
T 3k1w_A 9 SVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNG------------ 76 (341)
T ss_dssp EEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEE------------
T ss_pred cccceEccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECC------------
Confidence 4567777788899999999999999999999999999998776 3467899999999998764
Q ss_pred CCCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCc------
Q 039965 123 LPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLS------ 183 (419)
Q Consensus 123 ~~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s------ 183 (419)
|.|.+.|++|+ +.|.+++|+|++++.++ ++ ....++||||||++..+
T Consensus 77 ------------~~~~i~Yg~gs-~~G~~~~D~v~ig~~~v-~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~ 142 (341)
T 3k1w_A 77 ------------TELTLRYSTGT-VSGFLSQDIITVGGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTP 142 (341)
T ss_dssp ------------EEEEEEETTEE-EEEEEEEEEEEETTEEE-EEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCC
T ss_pred ------------CEEEEEECCcE-EEEEEEEEEEEECCcee-eEEEEEEEEccccccccCCcceEEECCchhhcccCCCC
Confidence 58999999994 99999999999999887 65 23457999999998765
Q ss_pred ----hhhh--hcCCeeEEeecCCC-----CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCE
Q 039965 184 ----FITQ--MGFPKFSYCISGVD-----SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSK 251 (419)
Q Consensus 184 ----~~~q--l~~~~Fs~~l~~~~-----~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~ 251 (419)
+.+| +..++||+||.+.. ..|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++
T Consensus 143 ~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~w~v~l~~i~v~~~ 213 (341)
T 3k1w_A 143 IFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKT---------GVWQIQMKGVSVGSS 213 (341)
T ss_dssp HHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECSST---------TSCEEEECCEEETTE
T ss_pred HHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecCCC---------CEEEEEEeEEEECCE
Confidence 3344 45599999998753 3899999999987 8999999999854 479999999999998
Q ss_pred EeeCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCC
Q 039965 252 VLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRL 331 (419)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 331 (419)
.+.. ..+..++|||||++++||++++++|.+++.+.. . ... +..+|... ..+
T Consensus 214 ~~~~---------~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~-----~-~~g------~~~~C~~~-------~~~ 265 (341)
T 3k1w_A 214 TLLC---------EDGCLALVDTGASYISGSTSSIEKLMEALGAKK-----R-LFD------YVVKCNEG-------PTL 265 (341)
T ss_dssp EEEC---------TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-----C-SSC------EEEEGGGG-------GGC
T ss_pred Eeec---------CCCCEEEEECCCChhcCCHHHHHHHHHHcCCee-----c-CCC------eEEeCCCC-------CcC
Confidence 7532 334679999999999999999999988764321 1 111 24567654 578
Q ss_pred CeEEEEEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCC--CCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 332 PIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDL--LGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 332 P~i~f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
|+|+|+|+|.+++|++++|+++.. ..++..|+. |+..+. ...+.||||++|||++|+|||++++|||||+++
T Consensus 266 p~i~f~f~g~~~~l~~~~~~~~~~----~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 266 PDISFHLGGKEYTLTSADYVFQES----YSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp CCEEEEETTEEEEECHHHHBCCSC----CCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CcEEEEECCEEEEECHHHheeEcc----CCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 999999999999999999998741 123578995 877532 123579999999999999999999999999975
No 13
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-54 Score=423.56 Aligned_cols=310 Identities=23% Similarity=0.384 Sum_probs=243.4
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASC 129 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c 129 (419)
.+|.+..+..|+++|+||||+|+++|+|||||+++||+|.+|+.+++.|||++|+||+...
T Consensus 5 ~~l~~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~~~f~~~~SsT~~~~~------------------- 65 (383)
T 2ewy_A 5 DNLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYIDTYFDTERSSTYRSKG------------------- 65 (383)
T ss_dssp TCEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTBSCCCCGGGCTTCEEEE-------------------
T ss_pred eeccCCCCCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCccccCcccccCccceeCC-------------------
Confidence 4566677778999999999999999999999999999999998889999999999999874
Q ss_pred CCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCC----C-----------CCCCcceeeeccCCCCc-----------
Q 039965 130 DPKGLCRVTLTYADLTSTEGNLATETILIGGPARPG----F-----------EDARTTGLMGMNRGSLS----------- 183 (419)
Q Consensus 130 ~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~----~-----------~~~~~~GIlGLg~~~~s----------- 183 (419)
|.|.+.|++| .+.|.+++|+|++++..... + ....++||||||++..+
T Consensus 66 -----~~~~i~Yg~G-s~~G~~~~Dtv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~ 139 (383)
T 2ewy_A 66 -----FDVTVKYTQG-SWTGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFD 139 (383)
T ss_dssp -----EEEEEECSSC-EEEEEEEEEEEEETTTEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHH
T ss_pred -----ceEEEEECCc-EEEEEEEEEEEEECCCccceeEEEEEEEEeecceeeccCcCceEEecCchhcccccccccCHHH
Confidence 5899999999 57999999999998642111 0 12467999999997653
Q ss_pred -hhhhhc-CCeeEEeecC--------CCCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEE
Q 039965 184 -FITQMG-FPKFSYCISG--------VDSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKV 252 (419)
Q Consensus 184 -~~~ql~-~~~Fs~~l~~--------~~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~ 252 (419)
+++|.. .++||+||.+ ....|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.
T Consensus 140 ~l~~q~~i~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~~~v~l~~i~v~g~~ 210 (383)
T 2ewy_A 140 SLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEE---------WYYQIEILKLEIGGQS 210 (383)
T ss_dssp HHHHHHTCCSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECSSB---------TTBBCCEEEEEETTEE
T ss_pred HHHHccCCCcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecCCC---------ceEEEEEEEEEECCEE
Confidence 444533 3899999964 136899999999987 8999999999874 3799999999999998
Q ss_pred eeCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCC
Q 039965 253 LNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLP 332 (419)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P 332 (419)
+.++...+ ....+||||||++++||++++++|.+++.+..... . ..+ .+ +.++..+|+..+... ...+|
T Consensus 211 ~~~~~~~~-----~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~-~-~~~-~~-~~~~~~~C~~~~~~~--~~~~P 279 (383)
T 2ewy_A 211 LNLDCREY-----NADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIP-E-FSD-GF-WTGSQLACWTNSETP--WSYFP 279 (383)
T ss_dssp CCCCTTTT-----TSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCSS-C-CCH-HH-HHTSEEEEECSSSCG--GGGSC
T ss_pred cccccccc-----CCccEEEEcCCccccCCHHHHHHHHHHHhhhcccc-c-Ccc-cc-ccccccccccCCccc--HhhCC
Confidence 87654332 14579999999999999999999999987754310 0 000 10 012356898753211 24689
Q ss_pred eEEEEEcCc------EEEEcccceeEEecCccCCCCceEEEE--EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEE
Q 039965 333 IVSLMFSGA------EMSVSGERLLYRVPGLSRGRDSVYCFT--FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFA 404 (419)
Q Consensus 333 ~i~f~f~g~------~~~i~~~~y~~~~~~~~~~~~~~~C~~--i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa 404 (419)
+|+|+|+|. +++|+|++|+.+... ...+..|++ +.+.. +.||||++|||++|+|||++++|||||
T Consensus 280 ~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~---~~~~~~C~~~~i~~~~----~~~ILG~~fl~~~yvvfD~~~~rIGfA 352 (383)
T 2ewy_A 280 KISIYLRDENSSRSFRITILPQLYIQPMMG---AGLNYECYRFGISPST----NALVIGATVMEGFYVIFDRAQKRVGFA 352 (383)
T ss_dssp CEEEEEECSSTTEEEEEEECHHHHEEEECC---CTTCSEEEEESEEEES----SCEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred cEEEEECCCCCCceEEEEEChHHheeeccc---CCCCceeEEEEecCCC----CcEEEChHHhCCeeEEEECCCCeEEEE
Confidence 999999974 799999999987521 123558985 44322 369999999999999999999999999
Q ss_pred cCCCCcc
Q 039965 405 EVRCDIA 411 (419)
Q Consensus 405 ~~~c~~~ 411 (419)
+++|+..
T Consensus 353 ~~~c~~~ 359 (383)
T 2ewy_A 353 ASPCAEI 359 (383)
T ss_dssp ECTTCBS
T ss_pred eccCCCc
Confidence 9999753
No 14
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=2.3e-54 Score=413.12 Aligned_cols=286 Identities=24% Similarity=0.352 Sum_probs=231.8
Q ss_pred ccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCC
Q 039965 55 HHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCD 130 (419)
Q Consensus 55 ~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~ 130 (419)
..+..|+++|+||||+|++.|+|||||+++||+|.+| |..++.|+|++|+|++.+.
T Consensus 12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~-------------------- 71 (329)
T 3c9x_A 12 SADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVS-------------------- 71 (329)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECT--------------------
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcC--------------------
Confidence 4577899999999999999999999999999999887 4568899999999998853
Q ss_pred CCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch-------------
Q 039965 131 PKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF------------- 184 (419)
Q Consensus 131 ~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~------------- 184 (419)
.|.|.+.|++|+.+.|.+++|+|++++.+++++ .....+||||||+...+.
T Consensus 72 ---~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l 148 (329)
T 3c9x_A 72 ---GASWSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWFSNA 148 (329)
T ss_dssp ---TCBEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHH
T ss_pred ---CCeEEEEeCCCCcEEEEEEEEEEEECCEEEcceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCHHHHH
Confidence 268999999997799999999999999877765 115789999999876543
Q ss_pred hhhhcCCeeEEeecCCCCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccC
Q 039965 185 ITQMGFPKFSYCISGVDSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPD 263 (419)
Q Consensus 185 ~~ql~~~~Fs~~l~~~~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 263 (419)
.+|+..++||+||.+ +..|.|+|||+|++ |.|++.|+|+... ..+|.|.+++|+|+++.+.
T Consensus 149 ~~~i~~~~FS~~l~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~--------~~~~~v~l~~i~v~~~~~~--------- 210 (329)
T 3c9x_A 149 ASSLAEPLFTADLRH-GQNGSYNFGYIDTSVAKGPVAYTPVDNS--------QGFWEFTASGYSVGGGKLN--------- 210 (329)
T ss_dssp HTTSSSSEEEEECCS-SSCEEEEESSCCGGGCSSCEEEEECBCT--------TSSCEEEECCEEETTCCCC---------
T ss_pred HHhcCCCEEEEEecC-CCCcEEEEeCcChhhcccceEEEEccCC--------CceEEEEEeeEEECCEecc---------
Confidence 234556999999986 36899999999987 8999999999853 2479999999999997653
Q ss_pred CCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEE
Q 039965 264 HTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEM 343 (419)
Q Consensus 264 ~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~ 343 (419)
..+..+||||||++++||++++++|.+++. +......... +..+|+ ..+|+|+|+|+|.++
T Consensus 211 -~~~~~aiiDSGTt~~~lp~~~~~~i~~~i~----~a~~~~~~~~-----~~~~C~---------~~~P~i~f~f~g~~~ 271 (329)
T 3c9x_A 211 -RNSIDGIADTGTTLLLLDDNVVDAYYANVQ----SAQYDNQQEG-----VVFDCD---------EDLPSFSFGVGSSTI 271 (329)
T ss_dssp -SCCEEEEECTTCCSEEECHHHHHHHHTTCT----TCEEETTTTE-----EEEETT---------CCCCCEEEEETTEEE
T ss_pred -CCCceEEEECCCCcEeCCHHHHHHHHHhCC----CcEEcCCCCE-----EEEECC---------CCCCcEEEEECCEEE
Confidence 234679999999999999999988866542 1111111111 234564 367999999999999
Q ss_pred EEcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcC
Q 039965 344 SVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEV 406 (419)
Q Consensus 344 ~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 406 (419)
+|++++|+++.. ..+...|++ |+..+ ..+.||||++|||++|+|||++++|||||+.
T Consensus 272 ~ip~~~~~~~~~----~~~~~~C~~~i~~~~--~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 272 TIPGDLLNLTPL----EEGSSTCFGGLQSSS--GIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp EECGGGGEEEES----STTCSEEEESEEECT--TTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred EECHHHeeeecc----CCCCCeEEEEEEcCC--CCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 999999998741 123468997 77654 2357999999999999999999999999974
No 15
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=1.9e-54 Score=412.90 Aligned_cols=281 Identities=20% Similarity=0.340 Sum_probs=230.7
Q ss_pred ccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC---CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 039965 55 HHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT---VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDP 131 (419)
Q Consensus 55 ~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~---~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~ 131 (419)
..+..|+++|+||||+|++.|+|||||+++||+|.+| |..++.|+|++|+|++...
T Consensus 12 ~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c~~~~~~y~~~~SsT~~~~~--------------------- 70 (325)
T 2apr_A 12 GNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADG--------------------- 70 (325)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSCCTTSCCBCGGGCTTCEEEE---------------------
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchHhcCCCCCCcccCCCeeeCC---------------------
Confidence 3566799999999999999999999999999988765 4568899999999998753
Q ss_pred CCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC------------CCCCcceeeeccCCCCc-------hhhh-----
Q 039965 132 KGLCRVTLTYADLTSTEGNLATETILIGGPARPGF------------EDARTTGLMGMNRGSLS-------FITQ----- 187 (419)
Q Consensus 132 ~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~------------~~~~~~GIlGLg~~~~s-------~~~q----- 187 (419)
|.|.+.|++|+.+.|.+++|+|++++.+++++ .....+||||||+...+ +++|
T Consensus 71 ---~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg 147 (325)
T 2apr_A 71 ---RTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQG 147 (325)
T ss_dssp ---EEEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTT
T ss_pred ---CEEEEEECCCCCEEEEEEEEEEEECCEEECcEEEEEEeccCcccccCCCceEEEeCCcccccccCCCCHHHHHHhcC
Confidence 58999999997799999999999999877665 12348999999988654 3333
Q ss_pred -hcCCeeEEeecCC--CCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccC
Q 039965 188 -MGFPKFSYCISGV--DSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPD 263 (419)
Q Consensus 188 -l~~~~Fs~~l~~~--~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 263 (419)
+..++||+||.+. +..|.|+|||+|++ |.|++.|+|+... ..+|.|.+++|+|++. +.
T Consensus 148 ~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~--------~~~~~v~l~~i~vg~~-~~--------- 209 (325)
T 2apr_A 148 LISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNS--------RGWWGITVDRATVGTS-TV--------- 209 (325)
T ss_dssp SCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSCCEEEECBCT--------TSSCEEEECEEEETTE-EE---------
T ss_pred CCCCceEEEEecCCCCCCCCEEEEccCCchhccCceEEEEccCC--------CCEEEEEEeEEEECCE-ec---------
Confidence 4459999999653 46899999999987 8999999999753 2479999999999993 31
Q ss_pred CCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEE
Q 039965 264 HTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEM 343 (419)
Q Consensus 264 ~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~ 343 (419)
..+..++|||||++++||+++|++|++++.+.+... .. +..+|+. ..+|+|+|+|+|.++
T Consensus 210 -~~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~------g~-----~~~~C~~--------~~~p~i~f~f~g~~~ 269 (325)
T 2apr_A 210 -ASSFDGILDTGTTLLILPNNIAASVARAYGASDNGD------GT-----YTISCDT--------SAFKPLVFSINGASF 269 (325)
T ss_dssp -ECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSS------SC-----EEECSCG--------GGCCCEEEEETTEEE
T ss_pred -CCCceEEEecCCccEECCHHHHHHHHHHHhcccCCC------Ce-----EEEECCC--------CCCCcEEEEECCEEE
Confidence 234579999999999999999999988876543221 11 2446752 248999999998899
Q ss_pred EEcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 344 SVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 344 ~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
+||+++|+++. . +..|++ |+..+ .+.||||++|||++|+|||++++|||||+++
T Consensus 270 ~ip~~~~~~~~------~-~~~C~~~i~~~~---~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 270 QVSPDSLVFEE------F-QGQCIAGFGYGN---WGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp EECGGGGEEEE------E-TTEEEESEEEES---SSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EECHHHEEEcC------C-CCeEEEEEEcCC---CCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 99999999874 2 568997 66654 2469999999999999999999999999874
No 16
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=1.2e-54 Score=417.33 Aligned_cols=282 Identities=20% Similarity=0.361 Sum_probs=233.2
Q ss_pred eeEEEEEEeCCCCceEEEEEeCCCCeeeec-----CCCC--CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCC
Q 039965 58 VSLTVSLKLGSPPQDVTMVLDTGSELSWLH-----CKKT--VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCD 130 (419)
Q Consensus 58 ~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~-----c~~~--~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~ 130 (419)
..|+++|.||||+|++.|+|||||+++||+ |.+| |..++.|+|++|+|++...
T Consensus 12 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~-------------------- 71 (339)
T 3fv3_A 12 PSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLG-------------------- 71 (339)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEE--------------------
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCC--------------------
Confidence 349999999999999999999999999997 7654 6678999999999999875
Q ss_pred CCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC------CCCCcceeeeccCCCCc----------------hhhhh
Q 039965 131 PKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF------EDARTTGLMGMNRGSLS----------------FITQM 188 (419)
Q Consensus 131 ~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~------~~~~~~GIlGLg~~~~s----------------~~~ql 188 (419)
|.|.+.|++|+.+.|.+++|+|++++.+++++ .....+||||||++..+ ++.||
T Consensus 72 ----~~~~i~Yg~gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~~~~~~~~~~L 147 (339)
T 3fv3_A 72 ----AAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQTSVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTL 147 (339)
T ss_dssp ----EEEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSCGGGCCCBCTTSCBCSCCCCCHHHHH
T ss_pred ----ceEEEEECCCceEEEEEEEEEEEECCEEECceEEEEEEecCCCceeEEecCccccccccccccccCccCCcHHHHH
Confidence 58999999999999999999999999888766 33457999999987643 45554
Q ss_pred c------CCeeEEeecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCccc
Q 039965 189 G------FPKFSYCISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVF 260 (419)
Q Consensus 189 ~------~~~Fs~~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 260 (419)
. .+.||+||.+.+ ..|.|+|||+|++ |.|++.|+|+... .+|.|++++|+|+++.+..
T Consensus 148 ~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~~~v~l~~i~v~g~~~~~----- 213 (339)
T 3fv3_A 148 KKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTSS---------QALTISLASVNLKGSSFSF----- 213 (339)
T ss_dssp HHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEEBCCS---------SSCEEEEEEEEESSCEEEE-----
T ss_pred HHCCCCCCceEEEEECCCCCCCeEEEEeeechHHeecceEEEecccC---------ccEEEEEEEEEECCEeecC-----
Confidence 3 389999998754 5899999999987 8999999999875 3799999999999987753
Q ss_pred ccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEc-
Q 039965 261 IPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFS- 339 (419)
Q Consensus 261 ~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~- 339 (419)
...++|||||++++||++++++|.+++.+.... ..... ..+..+|+. ..+|+|+|+|+
T Consensus 214 ------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~---~~~~~----~~~~~~C~~--------~~~p~i~f~f~~ 272 (339)
T 3fv3_A 214 ------GDGALLDSGTTLTYFPSDFAAQLADKAGARLVQ---VARDQ----YLYFIDCNT--------DTSGTTVFNFGN 272 (339)
T ss_dssp ------EEEEEECTTBSSEEECHHHHHHHHHHHTCEEEE---EETTE----EEEEECTTC--------CCCSEEEEEETT
T ss_pred ------CccEEEeCCCCCEecCHHHHHHHHHHcCCEEcc---ccccC----ceEEEecCC--------CCCCcEEEEECC
Confidence 246999999999999999999998887643211 00011 112446653 25799999996
Q ss_pred CcEEEEcccceeEEecCccCCCCceEEE-EEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCCCCc
Q 039965 340 GAEMSVSGERLLYRVPGLSRGRDSVYCF-TFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDI 410 (419)
Q Consensus 340 g~~~~i~~~~y~~~~~~~~~~~~~~~C~-~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~~ 410 (419)
|.+++|++++|+++. ++..|+ +|++. +.||||++|||++|+|||++++|||||+++|+.
T Consensus 273 g~~~~v~~~~~~~~~-------~~~~C~~~i~~~-----~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~ 332 (339)
T 3fv3_A 273 GAKITVPNTEYVYQN-------GDGTCLWGIQPS-----DDTILGDNFLRHAYLLYNLDANTISIAQVKYTT 332 (339)
T ss_dssp SCEEEEEGGGGEEEC-------SSSCEEESEEEC-----SSCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred CCEEEECHHHheeeC-------CCCeEEEEEEeC-----CcEEeChHHHhCEEEEEECCCCEEEEEecCCCC
Confidence 899999999999873 334686 58772 359999999999999999999999999999984
No 17
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=2.3e-54 Score=430.45 Aligned_cols=314 Identities=23% Similarity=0.381 Sum_probs=244.9
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASC 129 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c 129 (419)
..|+...+..|+++|+||||+|+++|+|||||+++||+|.+||..++.|+|++|+||+...
T Consensus 66 ~~l~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~cc~~~~~y~~~~SsT~~~~~------------------- 126 (455)
T 3lpj_A 66 DNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLR------------------- 126 (455)
T ss_dssp TCEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEE-------------------
T ss_pred ccccCCCCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccccccCCcccCCCCCCcccCC-------------------
Confidence 3455555668999999999999999999999999999999999999999999999999874
Q ss_pred CCCCCCeeEEecCCCCeeeeEEEEEEEEeCCC-CCCC---C-----------CCCCcceeeeccCCCCc--------hhh
Q 039965 130 DPKGLCRVTLTYADLTSTEGNLATETILIGGP-ARPG---F-----------EDARTTGLMGMNRGSLS--------FIT 186 (419)
Q Consensus 130 ~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~-~~~~---~-----------~~~~~~GIlGLg~~~~s--------~~~ 186 (419)
|.|.+.|++| .+.|.+++|+|+|++. .+.. + ....++||||||++..+ +++
T Consensus 127 -----~~~~i~Yg~G-s~~G~~~~Dtv~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~ 200 (455)
T 3lpj_A 127 -----KGVYVPYTQG-KWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFD 200 (455)
T ss_dssp -----EEEEEECSSC-EEEEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHH
T ss_pred -----ccEEEEeCCe-EEEEEEEEEEEEECCCcceeeEEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHH
Confidence 5899999999 5799999999999852 2221 1 12567999999987654 233
Q ss_pred hhc-----CCeeEEeecCC-----------CCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEEC
Q 039965 187 QMG-----FPKFSYCISGV-----------DSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVG 249 (419)
Q Consensus 187 ql~-----~~~Fs~~l~~~-----------~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~ 249 (419)
+|. .++||+||.+. ...|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+
T Consensus 201 ~L~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~w~v~l~~i~v~ 271 (455)
T 3lpj_A 201 SLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRRE---------WYYEVIIVRVEIN 271 (455)
T ss_dssp HHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSB---------TTBBCCEEEEEET
T ss_pred HHHHccCCCceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecCCC---------ceeEEEEeEEEEC
Confidence 322 27999999752 35899999999987 8999999999874 3799999999999
Q ss_pred CEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCC
Q 039965 250 SKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLP 329 (419)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 329 (419)
++.+.++...+ ....+||||||++++||.+++++|.+++.+..... ...+ .+ +.++..+|+...... ..
T Consensus 272 g~~~~~~~~~~-----~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~--~~~~-~~-~~g~~~~C~~~~~~~--~~ 340 (455)
T 3lpj_A 272 GQDLKMDCKEY-----NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTE--KFPD-GF-WLGEQLVCWQAGTTP--WN 340 (455)
T ss_dssp TEECCCCGGGG-----GSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTTS--CCCH-HH-HTTCSCEEESTTCCC--GG
T ss_pred CEEcccccccc-----CCCeEEEECCCcceeCCHHHHHHHHHHhhhhcccc--ccCc-cc-ccCcceecccccCCc--hh
Confidence 99987654332 24679999999999999999999999998865311 1111 00 112356898764211 13
Q ss_pred CCCeEEEEEcCc------EEEEcccceeEEecCccCCCCceEEEEEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEE
Q 039965 330 RLPIVSLMFSGA------EMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGF 403 (419)
Q Consensus 330 ~~P~i~f~f~g~------~~~i~~~~y~~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGf 403 (419)
.+|+|+|+|+|. +++|+|++|+++... .+.....|++|.... ..+.||||++|||++|+|||++++||||
T Consensus 341 ~~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~--~~~~~~~C~~f~~~~--~~~~~ILG~~fl~~~yvvfD~~~~rIGf 416 (455)
T 3lpj_A 341 IFPVISLYLMGEVTNQSFRITILPQQYLRPVED--VATSQDDCYKFAISQ--SSTGTVMGAVIMEGFYVVFDRARKRIGF 416 (455)
T ss_dssp GSCCEEEEEECSSTTEEEEEEECHHHHEEEECC--TTCCSCEEEEECEEE--ESSCEEECHHHHTTEEEEEETTTTEEEE
T ss_pred cCCcEEEEEcCCCcCceEEEEECHHHheEeccC--CCCCCceEEEEeccC--CCCcEEEChHHhCCeEEEEECCCCEEEE
Confidence 589999999976 499999999998621 001125899643221 1246999999999999999999999999
Q ss_pred EcCCCCccc
Q 039965 404 AEVRCDIAS 412 (419)
Q Consensus 404 a~~~c~~~~ 412 (419)
|+++|+...
T Consensus 417 A~~~c~~~~ 425 (455)
T 3lpj_A 417 AVSACHVHD 425 (455)
T ss_dssp EEETTCCCC
T ss_pred Eeccccccc
Confidence 999998765
No 18
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=8e-55 Score=417.30 Aligned_cols=279 Identities=22% Similarity=0.341 Sum_probs=229.5
Q ss_pred ceeEEEEEEeCCCCceEEEEEeCCCCeeeecCC--CC-----------CCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 039965 57 NVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCK--KT-----------VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDL 123 (419)
Q Consensus 57 ~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~--~~-----------~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~ 123 (419)
+..|+++|+||||+|++.|+|||||+++||+|. +| |..++.|||++|+|++...
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~------------- 77 (334)
T 1j71_A 11 GPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLN------------- 77 (334)
T ss_dssp SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEE-------------
T ss_pred CcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCC-------------
Confidence 345999999999999999999999999999643 22 4567899999999999864
Q ss_pred CCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC------CCCCcceeeeccCCCC--------chhhhh-
Q 039965 124 PVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF------EDARTTGLMGMNRGSL--------SFITQM- 188 (419)
Q Consensus 124 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~------~~~~~~GIlGLg~~~~--------s~~~ql- 188 (419)
|.|.+.|++|+.+.|.+++|+|++++.+++++ .....+||||||+... +++.||
T Consensus 78 -----------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~~L~ 146 (334)
T 1j71_A 78 -----------QDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTTSVDQGIMGIGFTADEAGYNLYDNVPVTLK 146 (334)
T ss_dssp -----------EEEEEEBTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSCGGGSSTTCCCCCHHHHHH
T ss_pred -----------CceEEEECCCCEEEEEEEEEEEEECCEEEccEEEEEEEecCCCccEEEEcCCcccCccccCCcHHHHHH
Confidence 58999999998789999999999999877765 3357899999999764 445553
Q ss_pred -----cCCeeEEeecCC-CCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccc
Q 039965 189 -----GFPKFSYCISGV-DSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFI 261 (419)
Q Consensus 189 -----~~~~Fs~~l~~~-~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 261 (419)
..++||+||.+. ...|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.+..
T Consensus 147 ~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~~~v~l~~i~v~g~~~~~------ 211 (334)
T 1j71_A 147 KQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTSS---------VELRVHLGSINFDGTSVST------ 211 (334)
T ss_dssp HTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEEEEEEECCCS---------SSCEEEEEEEEETTEEEEE------
T ss_pred HCCCCCccEEEEEeCCCCCCCeEEEEeeechHHccCceEEEEccCC---------CeEEEEEeEEEECCEeccC------
Confidence 348999999874 36899999999986 8999999999865 3799999999999988743
Q ss_pred cCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCcccccccc-ccccccccCCCCCCCCCeEEEEE-c
Q 039965 262 PDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAM-DLCYLIESTGPSLPRLPIVSLMF-S 339 (419)
Q Consensus 262 ~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~~~~~~~~~~~~~P~i~f~f-~ 339 (419)
+..++|||||++++||++++++|.+++.+... .... .+. .+|+ .+|+|+|+| +
T Consensus 212 -----~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~------~~~~----~~~~~~C~----------~~p~i~f~f~~ 266 (334)
T 1j71_A 212 -----NADVVLDSGTTITYFSQSTADKFARIVGATWD------SRNE----IYRLPSCD----------LSGDAVFNFDQ 266 (334)
T ss_dssp -----EEEEEECTTCSSEEECHHHHHHHHHHHTCEEE------TTTT----EEECSSSC----------CCSEEEEEEST
T ss_pred -----CccEEEeCCCCcEecCHHHHHHHHHHcCCccc------CCCc----eEEEEcCC----------CCCceEEEEcC
Confidence 24699999999999999999999887754321 1111 012 4563 369999999 5
Q ss_pred CcEEEEcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCCCCc
Q 039965 340 GAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDI 410 (419)
Q Consensus 340 g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~~ 410 (419)
|.+++|++++|+++. .++..|+. ++..+ .||||++|||++|+|||++++|||||+++|..
T Consensus 267 g~~~~i~~~~y~~~~------~~~~~C~~~i~~~~-----~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~ 327 (334)
T 1j71_A 267 GVKITVPLSELILKD------SDSSICYFGISRND-----ANILGDNFLRRAYIVYDLDDKTISLAQVKYTS 327 (334)
T ss_dssp TCEEEEEGGGGEEEC------SSSSCEEESEEECT-----TCEECHHHHTTEEEEEETTTTEEEEEEECCCS
T ss_pred CcEEEECHHHheeec------CCCCeeEEEEeECC-----CcEEChHhhccEEEEEECCCCEEEEEecCCCC
Confidence 899999999999984 22335996 76643 49999999999999999999999999999975
No 19
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=9.7e-55 Score=418.20 Aligned_cols=287 Identities=19% Similarity=0.334 Sum_probs=230.4
Q ss_pred ceeEEEEEEeCCCCceEEEEEeCCCCeeeecCC--CC-----------CCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 039965 57 NVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCK--KT-----------VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDL 123 (419)
Q Consensus 57 ~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~--~~-----------~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~ 123 (419)
+..|+++|+||||+|++.|+|||||+++||+|. +| |..++.|+|++|+|++...
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~------------- 77 (342)
T 2qzx_A 11 AITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLN------------- 77 (342)
T ss_dssp SSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEE-------------
T ss_pred CeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCC-------------
Confidence 455999999999999999999999999999643 22 4567899999999999864
Q ss_pred CCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC------CCCCcceeeeccCCCC--------chhhhh-
Q 039965 124 PVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF------EDARTTGLMGMNRGSL--------SFITQM- 188 (419)
Q Consensus 124 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~------~~~~~~GIlGLg~~~~--------s~~~ql- 188 (419)
|.|.+.|++|+.+.|.+++|+|++++.+++++ .....+||||||+... +++.||
T Consensus 78 -----------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~~L~ 146 (342)
T 2qzx_A 78 -----------TRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANVWSTSARKGILGIGFQSGEATEFDYDNLPISLR 146 (342)
T ss_dssp -----------EEEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEECSCGGGCSSSSCCCCHHHHHH
T ss_pred -----------CcEEEEeCCCCeEEEEEEEEEEEECCEEecceEEEEEEecCCCcCEEEEccccccCCCccCccHHHHHH
Confidence 58999999998789999999999999877765 3357899999998764 445553
Q ss_pred -----cCCeeEEeecCC-CCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccc
Q 039965 189 -----GFPKFSYCISGV-DSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFI 261 (419)
Q Consensus 189 -----~~~~Fs~~l~~~-~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 261 (419)
..++||+||.+. ...|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.+..
T Consensus 147 ~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~~~v~l~~i~v~g~~~~~------ 211 (342)
T 2qzx_A 147 NQGIIGKAAYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPITSE---------KKLTVGLRSVNVRGRNVDA------ 211 (342)
T ss_dssp HTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCCS---------SSCEEEEEEEEETTEEEEE------
T ss_pred HCCCcCccEEEEEeCCCCCCCeEEEECccchhhEecceEEEeccCC---------ceEEEEEeEEEECCEecCC------
Confidence 348999999874 36899999999986 8999999999875 3799999999999988743
Q ss_pred cCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEE-cC
Q 039965 262 PDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMF-SG 340 (419)
Q Consensus 262 ~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f-~g 340 (419)
+..++|||||++++||++++++|.+++.+.... ..... ..|..+| ..+|+|+|+| +|
T Consensus 212 -----~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~---~~~~~---------~~~~~~C-----~~~p~i~f~f~~g 269 (342)
T 2qzx_A 212 -----NTNVLLDSGTTISYFTRSIVRNILYAIGAQMKF---DSAGN---------KVYVADC-----KTSGTIDFQFGNN 269 (342)
T ss_dssp -----EEEEEECTTCSSEEECHHHHHHHHHHHTCEEEE---CTTSC---------EEEEECT-----TCCCEEEEEETTT
T ss_pred -----CcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeee---ccCCC---------cEEEEEC-----CCCCcEEEEECCC
Confidence 246999999999999999999998877543210 00011 1233344 2479999999 58
Q ss_pred cEEEEcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCCCCc
Q 039965 341 AEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDI 410 (419)
Q Consensus 341 ~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~~ 410 (419)
.+++|++++|+++... ..+.++..|++ +...+ .||||++|||++|+|||++++|||||+++|..
T Consensus 270 ~~~~i~~~~~~~~~~~-~~~~~~~~C~~~i~~~~-----~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~ 334 (342)
T 2qzx_A 270 LKISVPVSEFLFQTYY-TSGKPFPKCEVRIRESE-----DNILGDNFLRSAYVVYNLDDKKISMAPVKYTS 334 (342)
T ss_dssp EEEEEEGGGGEECCBC-TTSCBCSSEEESEEECS-----SCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred cEEEEcHHHhcccccc-cCCCCCCccEEEEecCC-----CcEeChHhhhcEEEEEECCCCEEEEEeeCCCC
Confidence 9999999999987410 00123457996 66543 49999999999999999999999999999975
No 20
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=4.3e-54 Score=422.63 Aligned_cols=314 Identities=23% Similarity=0.380 Sum_probs=243.0
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASC 129 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c 129 (419)
..|+...+..|+++|+||||+|+++|+|||||+++||+|.+||..++.|+|++|+||+...
T Consensus 20 ~~l~~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~------------------- 80 (402)
T 3vf3_A 20 DNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLR------------------- 80 (402)
T ss_dssp TCEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEE-------------------
T ss_pred eeccCCCCCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCCCcccCCcCcccCcccccCC-------------------
Confidence 3455555668999999999999999999999999999999999999999999999999874
Q ss_pred CCCCCCeeEEecCCCCeeeeEEEEEEEEeCC-CCCCCC--------------CCCCcceeeeccCCCCc--------hhh
Q 039965 130 DPKGLCRVTLTYADLTSTEGNLATETILIGG-PARPGF--------------EDARTTGLMGMNRGSLS--------FIT 186 (419)
Q Consensus 130 ~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~-~~~~~~--------------~~~~~~GIlGLg~~~~s--------~~~ 186 (419)
|.|.+.|++| .+.|.+++|+|++++ ..++.+ ....++||||||++..+ ++.
T Consensus 81 -----~~~~i~Yg~G-s~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~ 154 (402)
T 3vf3_A 81 -----KGVYVPYTQG-KWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFD 154 (402)
T ss_dssp -----EEEEEECSSC-EEEEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHH
T ss_pred -----CEEEEEECcE-EEEEEEEEEEEEECCccccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHH
Confidence 5899999999 579999999999984 333321 13567999999987654 233
Q ss_pred hhc-----CCeeEEeecCC-----------CCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEEC
Q 039965 187 QMG-----FPKFSYCISGV-----------DSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVG 249 (419)
Q Consensus 187 ql~-----~~~Fs~~l~~~-----------~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~ 249 (419)
||. .++||+||.+. ...|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+
T Consensus 155 ~L~~q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~w~v~l~~i~v~ 225 (402)
T 3vf3_A 155 SLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRRE---------WYYEVIIVRVEIN 225 (402)
T ss_dssp HHHHHSCCCSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECSSB---------TTBEECEEEEEET
T ss_pred HHHHccCCccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCCcC---------cEEEEEEeEEEEC
Confidence 332 27999999742 25899999999987 8999999999874 3799999999999
Q ss_pred CEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCC
Q 039965 250 SKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLP 329 (419)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 329 (419)
++.+.++...+ ....++|||||++++||.+++++|.+++.+.... ....+.. +.++..+|+...... ..
T Consensus 226 g~~~~~~~~~~-----~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~--~~~~~~~--~~~~~~~C~~~~~~~--~~ 294 (402)
T 3vf3_A 226 GQDLKMDCKEY-----NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST--EKFPDGF--WLGEQLVCWQAGTTP--WN 294 (402)
T ss_dssp TEECCCCGGGG-----GSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTT--SCCCTTG--GGTCSCEEEETTCCC--GG
T ss_pred CEEeccccccc-----CCCeEEEECCCCcccCCHHHHHHHHHHHhhhccc--cccCccc--cccccccccccccch--Hh
Confidence 99987654332 2457999999999999999999999999887531 1111111 122356898764211 13
Q ss_pred CCCeEEEEEcCc------EEEEcccceeEEecCccCCCCceEEEEEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEE
Q 039965 330 RLPIVSLMFSGA------EMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGF 403 (419)
Q Consensus 330 ~~P~i~f~f~g~------~~~i~~~~y~~~~~~~~~~~~~~~C~~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGf 403 (419)
.+|+|+|+|+|. +++|+|++|+++.... +.....|++|.... ..+.||||++|||++|+|||++++||||
T Consensus 295 ~~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~--~~~~~~C~~~~~~~--~~~~~ILG~~fl~~~yvvfD~~~~rIGf 370 (402)
T 3vf3_A 295 IFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV--ATSQDDCYKFAISQ--SSTGTVMGAVIMEGFYVVFDRARKRIGF 370 (402)
T ss_dssp GSCCEEEEEECSSTTEEEEEEECHHHHEEECCCG--GGTTEEEEEECEEE--ESSCEEECHHHHTTEEEEEEGGGTEEEE
T ss_pred hCCceEEEEecCCCCceEEEEECHHHheehhccC--CCCCceEEEEeccC--CCCcEEEChHHhCCeEEEEECCCCEEEE
Confidence 689999999976 5999999999985210 01125898632211 1246999999999999999999999999
Q ss_pred EcCCCCccc
Q 039965 404 AEVRCDIAS 412 (419)
Q Consensus 404 a~~~c~~~~ 412 (419)
|+++|+...
T Consensus 371 A~~~c~~~~ 379 (402)
T 3vf3_A 371 AVSACHVHD 379 (402)
T ss_dssp EEETTCCBC
T ss_pred EecccCccc
Confidence 999998654
No 21
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=1.2e-54 Score=415.13 Aligned_cols=285 Identities=22% Similarity=0.371 Sum_probs=229.3
Q ss_pred cceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCC--C-CCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 039965 56 HNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTV--S-FNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPK 132 (419)
Q Consensus 56 ~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~--~-~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~ 132 (419)
.+..|+++|.||||+|++.|+|||||+++||+|.+|. . .++.|+|++|+|++.+.
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~y~~~~SsT~~~~~---------------------- 70 (329)
T 1oew_A 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLS---------------------- 70 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC-CCCBCGGGCTTCEEEE----------------------
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCccccccCccCCccCccceecC----------------------
Confidence 5677999999999999999999999999999988762 1 58899999999999863
Q ss_pred CCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch---------h----h
Q 039965 133 GLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF---------I----T 186 (419)
Q Consensus 133 ~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~---------~----~ 186 (419)
.|.|.+.|++|+.+.|.+++|+|++++.+++++ .....+||||||+...+. + +
T Consensus 71 -~~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~ 149 (329)
T 1oew_A 71 -GATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKA 149 (329)
T ss_dssp -EEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHTT
T ss_pred -CCeEEEEeCCCCcEEEEEEEEEEEECCEEEeeeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCHHHHHHH
Confidence 258999999997799999999999999887765 115789999999876543 2 3
Q ss_pred hhcCCeeEEeecCCCCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCCC
Q 039965 187 QMGFPKFSYCISGVDSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHT 265 (419)
Q Consensus 187 ql~~~~Fs~~l~~~~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 265 (419)
|+..++||+||.+ +..|.|+|||+|++ |.|++.|+|+... ..+|.|.+++|+|+++.+. .
T Consensus 150 ~i~~~~FS~~L~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~--------~~~~~v~l~~i~v~~~~~~----------~ 210 (329)
T 1oew_A 150 SLDSPVFTADLGY-HAPGTYNFGFIDTTAYTGSITYTAVSTK--------QGFWEWTSTGYAVGSGTFK----------S 210 (329)
T ss_dssp TSSSSEEEEECCS-SSCEEEEESCCCTTSSSSCCEEEECBCT--------TSSCEEEEEEEEETTSCCE----------E
T ss_pred hccCcEEEEEccC-CCCeEEEEeccChHhcccceEEEEccCC--------CceEEEEEeeEEECCeecc----------C
Confidence 4556999999986 36899999999987 8999999999853 2479999999999997553 1
Q ss_pred CCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEEEE
Q 039965 266 GAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSV 345 (419)
Q Consensus 266 ~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~i 345 (419)
.+..+||||||++++||++++++|.+++. +......... +..+|+ ..+|+|+|+|+|++++|
T Consensus 211 ~~~~aiiDSGTt~~~lP~~~~~~l~~~i~----~a~~~~~~g~-----~~~~C~---------~~~P~i~f~fgg~~~~i 272 (329)
T 1oew_A 211 TSIDGIADTGTTLLYLPATVVSAYWAQVS----GAKSSSSVGG-----YVFPCS---------ATLPSFTFGVGSARIVI 272 (329)
T ss_dssp EEEEEEECTTCCSEEECHHHHHHHHTTST----TCEEETTTTE-----EEEETT---------CCCCCEEEEETTEEEEE
T ss_pred CCceEEEeCCCCCEECCHHHHHHHHHhCC----CcEEcCCCCE-----EEEECC---------CCCCcEEEEECCEEEEE
Confidence 23579999999999999999998876542 1111111111 234564 36799999999999999
Q ss_pred cccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEEC-CCCEEEEEcC
Q 039965 346 SGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDL-INSRVGFAEV 406 (419)
Q Consensus 346 ~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~-~~~riGfa~~ 406 (419)
++++|+++.. ..+...|++ |+..+ ..+.||||++|||++|+|||+ +++|||||+.
T Consensus 273 p~~~~~~~~~----~~~~~~C~~~i~~~~--~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 273 PGDYIDFGPI----STGSSSCFGGIQSSA--GIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp CHHHHEEEES----STTCSEEEESEEEST--TTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred CHHHeeeeec----CCCCCeEEEEEEeCC--CCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 9999998741 123468997 77654 235799999999999999999 9999999974
No 22
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=5.4e-54 Score=427.70 Aligned_cols=307 Identities=20% Similarity=0.326 Sum_probs=240.5
Q ss_pred cccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC-----CCCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 039965 48 TANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT-----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQD 122 (419)
Q Consensus 48 ~~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~-----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~ 122 (419)
...+|.++.+..|+++|+||||+|++.|+|||||+++||+|..| |..|+.|+|++|+||+...
T Consensus 42 ~~~~l~n~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~------------ 109 (478)
T 1qdm_A 42 DIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNG------------ 109 (478)
T ss_dssp CSGGGCCGGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCC------------
T ss_pred ceEEeEeccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCCCCCCcccCCCeeeCC------------
Confidence 44678888899999999999999999999999999999998876 5568899999999998753
Q ss_pred CCCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch-----
Q 039965 123 LPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF----- 184 (419)
Q Consensus 123 ~~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~----- 184 (419)
|.|.+.|++| .+.|.+++|+|++++.+++++ ....++||||||++..+.
T Consensus 110 ------------~~~~i~Yg~G-s~~G~~~~Dtv~ig~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~p 176 (478)
T 1qdm_A 110 ------------KPAAIQYGTG-SIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVP 176 (478)
T ss_dssp ------------CEEEEEETTE-EEEEEEEEEEEEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCC
T ss_pred ------------cEEEEEcCCC-CeEEEEEEEEEEECCeEECCEEEEEEEecCCcccccccccceecccccccccCCCCc
Confidence 5899999999 589999999999999877665 123569999999987763
Q ss_pred -----hhh--hcCCeeEEeecCCC---CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEe
Q 039965 185 -----ITQ--MGFPKFSYCISGVD---SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVL 253 (419)
Q Consensus 185 -----~~q--l~~~~Fs~~l~~~~---~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~ 253 (419)
.+| +..++||+||++.. ..|.|+|||+|++ |.|++.|+|+... ++|.|.+++|+|+++.+
T Consensus 177 ~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~~---------~~w~v~l~~i~v~g~~~ 247 (478)
T 1qdm_A 177 VWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQK---------GYWQFDMGDVLVGGKST 247 (478)
T ss_dssp HHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEEE---------TTEEEEECCEEETTEEC
T ss_pred HHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccCC---------CeEEEEEeEEEECCEEE
Confidence 334 44599999998752 5899999999987 8999999999864 47999999999999886
Q ss_pred eCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHh----------------------hcccc---------
Q 039965 254 NLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQT----------------------KGILR--------- 302 (419)
Q Consensus 254 ~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~----------------------~~~~~--------- 302 (419)
.+. ..+..+|+||||+++++|.+++++|.+++.+.. .....
T Consensus 248 ~~~--------~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~igl 319 (478)
T 1qdm_A 248 GFC--------AGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGL 319 (478)
T ss_dssp STT--------TTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred eec--------CCCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccccc
Confidence 542 245689999999999999999999988875310 00000
Q ss_pred ---------------ccCCC-----------------------------------------------ccccccccccccc
Q 039965 303 ---------------VFDDP-----------------------------------------------NFVFQGAMDLCYL 320 (419)
Q Consensus 303 ---------------~~~~~-----------------------------------------------~~~~~~~~~~C~~ 320 (419)
..... ......+.++|..
T Consensus 320 C~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~ 399 (478)
T 1qdm_A 320 CTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGS 399 (478)
T ss_dssp C---------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGG
T ss_pred cccCccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeeccc
Confidence 00000 0000012334433
Q ss_pred cccCCCCCCCCCeEEEEEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCC--CCCceeeeeccceeeeEEEEECC
Q 039965 321 IESTGPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDL--LGIEAFVIGHHHQQNLWVEFDLI 397 (419)
Q Consensus 321 ~~~~~~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~--~~~~~~iLG~~fl~~~y~vfD~~ 397 (419)
. ..+|+|+|+|+|+.++|+|++|+++.. ......|++ |+..+. ..++.||||+.|||++|+|||++
T Consensus 400 ~-------~~lP~i~f~~gg~~~~l~p~~yi~~~~----~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~ 468 (478)
T 1qdm_A 400 L-------GSMPDIEFTIGGKKFALKPEEYILKVG----EGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYG 468 (478)
T ss_dssp G-------TTCCCEEEEETTEEEEECHHHHEEECS----CGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETT
T ss_pred c-------cccccEEEEECCEEEEEChHHhEEEcc----CCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECC
Confidence 3 579999999999999999999999851 112457996 876542 12468999999999999999999
Q ss_pred CCEEEEEcCC
Q 039965 398 NSRVGFAEVR 407 (419)
Q Consensus 398 ~~riGfa~~~ 407 (419)
++|||||+++
T Consensus 469 ~~rIGfA~a~ 478 (478)
T 1qdm_A 469 KLRIGFAKAA 478 (478)
T ss_dssp TTEEEEEEEC
T ss_pred CCEEEEEeCC
Confidence 9999999864
No 23
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=9.9e-54 Score=418.97 Aligned_cols=311 Identities=23% Similarity=0.385 Sum_probs=243.8
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASC 129 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c 129 (419)
.+|+...+..|+++|+||||+|++.|+|||||+++||+|.+|+.+++.|+|++|+||+...
T Consensus 13 ~~l~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~------------------- 73 (395)
T 2qp8_A 13 DNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLR------------------- 73 (395)
T ss_dssp TCEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEE-------------------
T ss_pred eecCCCCCceEEEEEEecCCCceEEEEEecCCCceEEECCCCccccCCcCcccCCCceeCC-------------------
Confidence 4555666778999999999999999999999999999999998899999999999999874
Q ss_pred CCCCCCeeEEecCCCCeeeeEEEEEEEEeC-CCCCCCC--------------CCCCcceeeeccCCCCc-----------
Q 039965 130 DPKGLCRVTLTYADLTSTEGNLATETILIG-GPARPGF--------------EDARTTGLMGMNRGSLS----------- 183 (419)
Q Consensus 130 ~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g-~~~~~~~--------------~~~~~~GIlGLg~~~~s----------- 183 (419)
|.|.+.|++| .+.|.+++|+|+++ +..++.+ ....++||||||+...+
T Consensus 74 -----~~~~i~Yg~G-s~~G~~~~Dtv~ig~g~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~~~~~~~ 147 (395)
T 2qp8_A 74 -----KGVYVPYTQG-KWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFD 147 (395)
T ss_dssp -----EEEEEECSSC-EEEEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHH
T ss_pred -----ceEEEEECCc-EEEEEEEeEEEEECCCCCceEEEEEEEEEccCcccccccCccceEEcCchhhccCCCCCCCHHH
Confidence 5899999999 56999999999998 4444321 12467999999997653
Q ss_pred -hhhhhc-CCeeEEeecCC-----------CCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEEC
Q 039965 184 -FITQMG-FPKFSYCISGV-----------DSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVG 249 (419)
Q Consensus 184 -~~~ql~-~~~Fs~~l~~~-----------~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~ 249 (419)
+.+|.. .++||+||.+. ...|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+
T Consensus 148 ~l~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~~~v~l~~i~v~ 218 (395)
T 2qp8_A 148 SLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRRE---------WYYEVIIVRVEIN 218 (395)
T ss_dssp HHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSB---------TTBBCCEEEEEET
T ss_pred HHHHccCCcceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccCCC---------ceEEEEEEEEEEC
Confidence 334422 27999999753 26899999999987 8999999999864 3799999999999
Q ss_pred CEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCC
Q 039965 250 SKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLP 329 (419)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 329 (419)
++.+.++...+. ...+||||||++++||++++++|.+++.+..... ... ..+ +.++..+|+..+... ..
T Consensus 219 g~~~~~~~~~~~-----~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~--~~~-~~~-~~~~~~~C~~~~~~~--~~ 287 (395)
T 2qp8_A 219 GQDLKMDCKEYN-----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTE--KFP-DGF-WLGEQLVCWQAGTTP--WN 287 (395)
T ss_dssp TEECCCCGGGGG-----SSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTS--CCC-HHH-HTTCSCEEESTTCCC--GG
T ss_pred CEEcccCccccC-----CceEEEEcCCCcEecCHHHHHHHHHHHhhhcccc--cCC-ccc-cccccccccccccch--Hh
Confidence 998876544331 3579999999999999999999999998765321 000 010 112246898764211 23
Q ss_pred CCCeEEEEEcCc------EEEEcccceeEEecCccCCCCceEEEE--EEcCCCCCCceeeeeccceeeeEEEEECCCCEE
Q 039965 330 RLPIVSLMFSGA------EMSVSGERLLYRVPGLSRGRDSVYCFT--FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRV 401 (419)
Q Consensus 330 ~~P~i~f~f~g~------~~~i~~~~y~~~~~~~~~~~~~~~C~~--i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~ri 401 (419)
.+|+|+|+|+|. +++|+|++|+.+... ...+...|++ +.+.. +.||||++|||++|+|||++++||
T Consensus 288 ~~P~i~f~f~g~~~~~~~~~~l~p~~yi~~~~~--~~~~~~~C~~~~i~~~~----~~~ILG~~fl~~~yvvfD~~~~rI 361 (395)
T 2qp8_A 288 IFPVISLYLMGEVTNQSFRITILPQQYLRPVED--VATSQDDCYKFAISQSS----TGTVMGAVIMEGFYVVFDRARKRI 361 (395)
T ss_dssp GSCCEEEEEECSSTTEEEEEEECHHHHEEEECC--TTCCSCEEEEECEEEES----SCEEECHHHHTTEEEEEETTTTEE
T ss_pred hCCcEEEEEccCCCCceEEEEECHHHhEeeccc--CCCCCceEEEEEecCCC----CcEEEChHHhCCeeEEEECCCCEE
Confidence 689999999965 799999999998521 0112358974 55432 469999999999999999999999
Q ss_pred EEEcCCCCcc
Q 039965 402 GFAEVRCDIA 411 (419)
Q Consensus 402 Gfa~~~c~~~ 411 (419)
|||+++|+..
T Consensus 362 GfA~~~c~~~ 371 (395)
T 2qp8_A 362 GFAVSACHVH 371 (395)
T ss_dssp EEEEETTCCC
T ss_pred EEEeccCCCC
Confidence 9999999863
No 24
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=2.7e-54 Score=415.38 Aligned_cols=288 Identities=20% Similarity=0.367 Sum_probs=229.7
Q ss_pred ceeEEEEEEeCCCCceEEEEEeCCCCeeeec-----CCC--------CCCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 039965 57 NVSLTVSLKLGSPPQDVTMVLDTGSELSWLH-----CKK--------TVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDL 123 (419)
Q Consensus 57 ~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~-----c~~--------~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~ 123 (419)
+..|+++|+||||+|++.|+|||||+++||+ |.+ .|..++.|+|++|+|++...
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~------------- 77 (342)
T 3pvk_A 11 QVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLN------------- 77 (342)
T ss_dssp SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEE-------------
T ss_pred CcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecC-------------
Confidence 3459999999999999999999999999996 532 25568899999999999874
Q ss_pred CCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC------CCCCcceeeeccCCCC-------chhhhhc-
Q 039965 124 PVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF------EDARTTGLMGMNRGSL-------SFITQMG- 189 (419)
Q Consensus 124 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~------~~~~~~GIlGLg~~~~-------s~~~ql~- 189 (419)
|.|.+.|++|+.+.|.+++|+|++++.+++++ .....+||||||++.. +++.||.
T Consensus 78 -----------~~~~i~Yg~gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~L~~ 146 (342)
T 3pvk_A 78 -----------TPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKK 146 (342)
T ss_dssp -----------EEEEEECSSSCEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSCGGGCSSCSSCCHHHHHHH
T ss_pred -----------CeEEEEecCCCeEEEEEEEEEEEECCEEecceEEEEEEccCCCccEEEecCccccccccCCcHHHHHHh
Confidence 58999999997799999999999999888765 3447899999999873 4555543
Q ss_pred -----CCeeEEeecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCccccc
Q 039965 190 -----FPKFSYCISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIP 262 (419)
Q Consensus 190 -----~~~Fs~~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 262 (419)
.++||+||.+.+ ..|.|+|||+|++ |.|++.|+|+.... +|.|++++|+|+++.+..+
T Consensus 147 qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~---------~~~v~l~~i~v~g~~~~~~------ 211 (342)
T 3pvk_A 147 QGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTSDR---------ELRISLGSVEVSGKTINTD------ 211 (342)
T ss_dssp TTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCCSS---------SCEEEEEEEEETTEEEEEE------
T ss_pred cCCCCCceEEEEeCCCCCCCcEEEECccCccceeeeeEEeecCccc---------eEEEEEeEEEECCEEecCC------
Confidence 389999998754 6899999999987 89999999998753 7999999999999987532
Q ss_pred CCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEc-Cc
Q 039965 263 DHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFS-GA 341 (419)
Q Consensus 263 ~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~-g~ 341 (419)
+..++|||||++++||++++++|.+++.+... ..... ..+|..+| ...|+|+|+|+ |.
T Consensus 212 ----~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~----~~~~~--------~~~~~~~C-----~~~p~i~f~f~~g~ 270 (342)
T 3pvk_A 212 ----NVDVLLDSGTTITYLQQDLADQIIKAFNGKLT----QDSNG--------NSFYEVDC-----NLSGDVVFNFSKNA 270 (342)
T ss_dssp ----EEEEEECTTCSSEEECHHHHHHHHHHTTCEEE----ECTTS--------CEEEEECS-----CCCSEEEEEESTTC
T ss_pred ----CceEEEeCCCCCeecCHHHHHHHHHHcCCeec----ccCCC--------ceEEEEec-----CCCCceEEEECCCC
Confidence 25799999999999999999999877643221 10010 02344444 34599999998 89
Q ss_pred EEEEcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCCCCc
Q 039965 342 EMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDI 410 (419)
Q Consensus 342 ~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~~ 410 (419)
+++|++++|+++... ..+.....|+. +... +.||||++|||++|+|||++++|||||+++|+.
T Consensus 271 ~~~vp~~~~~~~~~~-~~g~~~~~C~~~i~~~-----~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~ 334 (342)
T 3pvk_A 271 KISVPASEFAASLQG-DDGQPYDKCQLLFDVN-----DANILGDNFLRSAYIVYDLDDNEISLAQVKYTS 334 (342)
T ss_dssp EEEEEGGGGEEC-----------CEEESEEEC-----TTCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred EEEEcHHHheeeccc-cCCCcCCeeEEEEeeC-----CCeEeCHHHHhcEEEEEECCCCEEEEEecCCCC
Confidence 999999999987310 00111257985 7663 359999999999999999999999999999984
No 25
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=3.5e-54 Score=418.03 Aligned_cols=290 Identities=20% Similarity=0.329 Sum_probs=238.1
Q ss_pred cccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 039965 48 TANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDL 123 (419)
Q Consensus 48 ~~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~ 123 (419)
...+|.+..+..|+++|+||||+|++.|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 52 ~~~pl~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~------------- 118 (375)
T 1miq_A 52 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDG------------- 118 (375)
T ss_dssp BCCCGGGTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEE-------------
T ss_pred ceEEcccCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECC-------------
Confidence 34678888899999999999999999999999999999998876 5568899999999998864
Q ss_pred CCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-----C---------CCCcceeeeccCCCCch-----
Q 039965 124 PVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-----E---------DARTTGLMGMNRGSLSF----- 184 (419)
Q Consensus 124 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-----~---------~~~~~GIlGLg~~~~s~----- 184 (419)
|.|.+.|++|+ +.|.+++|+|++++.++++. . ...++||||||++..+.
T Consensus 119 -----------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~v~~~Fg~~~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~ 186 (375)
T 1miq_A 119 -----------TKVDITYGSGT-VKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDP 186 (375)
T ss_dssp -----------EEEEEEETTEE-EEEEEEEEEEEETTEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSSCCTTCSSCCC
T ss_pred -----------cEEEEEeCCCe-EEEEEEEEEEEEcCceECcEEEEEEeccccccccccCCCceEEeCCCCcccccCCCC
Confidence 58999999995 89999999999998765432 2 25679999999987653
Q ss_pred -----hhh--hcCCeeEEeecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeC
Q 039965 185 -----ITQ--MGFPKFSYCISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNL 255 (419)
Q Consensus 185 -----~~q--l~~~~Fs~~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~ 255 (419)
.+| +..++||+||.+.+ ..|.|+|||+|++ |.|++.|+|+... .+|.|.++ |+|+++.+
T Consensus 187 ~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~w~v~l~-i~v~g~~~-- 254 (375)
T 1miq_A 187 IVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD---------LYWQIDLD-VHFGKQTM-- 254 (375)
T ss_dssp HHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSSS---------SSSEEEEE-EEETTEEE--
T ss_pred HHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHHHcCCceEEEecCCC---------ceEEEEEE-EEECCEEc--
Confidence 233 44599999998754 5899999999987 8999999999753 47999999 99999876
Q ss_pred CCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEE
Q 039965 256 PKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVS 335 (419)
Q Consensus 256 ~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~ 335 (419)
.+..++|||||+++++|.+++++|.+++.+.. ...... +..+|+. ..+|+|+
T Consensus 255 ----------~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~-----~~~~g~-----~~~~C~~--------~~~P~i~ 306 (375)
T 1miq_A 255 ----------EKANVIVDSGTTTITAPSEFLNKFFANLNVIK-----VPFLPF-----YVTTCDN--------KEMPTLE 306 (375)
T ss_dssp ----------EEEEEEECTTBSSEEECHHHHHHHHHHHTCEE-----CTTSSC-----EEEETTC--------TTCCCEE
T ss_pred ----------ccceEEecCCCccEEcCHHHHHHHHHHhCCcc-----cCCCCe-----EEEECCC--------CCCCcEE
Confidence 12579999999999999999999988774321 111111 2456754 2689999
Q ss_pred EEEcCcEEEEcccceeEEecCccCCCCceEEE-EEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 336 LMFSGAEMSVSGERLLYRVPGLSRGRDSVYCF-TFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 336 f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~-~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
|+|+|.+++|+|++|+++.. ..+...|+ +|++.+.. .+.||||++|||++|+|||++++|||||+++
T Consensus 307 f~f~g~~~~l~~~~yi~~~~----~~g~~~C~~~~~~~~~~-~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 307 FKSANNTYTLEPEYYMNPIL----EVDDTLCMITMLPVDID-SNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp EECSSCEEEECGGGSEEESS----SSSCSEEEESEEECCSS-SSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEECCEEEEECHHHhEeecc----CCCCCeEEEEEEECCCC-CCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 99999999999999999851 11345899 58876632 2579999999999999999999999999875
No 26
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=3.4e-54 Score=425.34 Aligned_cols=289 Identities=21% Similarity=0.287 Sum_probs=238.2
Q ss_pred cccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 039965 48 TANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDL 123 (419)
Q Consensus 48 ~~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~ 123 (419)
...+|.++.+..|+++|+||||||++.|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 127 ~~~pL~n~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~------------- 193 (451)
T 3qvc_A 127 DNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDD------------- 193 (451)
T ss_dssp CCCCGGGGBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEE-------------
T ss_pred CccceeecCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCC-------------
Confidence 45688888999999999999999999999999999999999887 7778999999999998864
Q ss_pred CCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC------C---------CCCcceeeeccCCCCc-----
Q 039965 124 PVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF------E---------DARTTGLMGMNRGSLS----- 183 (419)
Q Consensus 124 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~------~---------~~~~~GIlGLg~~~~s----- 183 (419)
|.|.+.|++|+ +.|.+++|+|++|+.+++ + . ....+||||||++..+
T Consensus 194 -----------~~f~i~YgdGs-~~G~~~~Dtv~igg~~v~-~~Fg~a~~t~~~~~~f~~~~~dGILGLg~~~~s~~~~~ 260 (451)
T 3qvc_A 194 -----------TPVKLTSKAGT-ISGIFSKDLVTIGKLSVP-YKFIEMTEIVGFEPFYSESDVDGVFGLGWKDLSIGSID 260 (451)
T ss_dssp -----------EEEEEECSSEE-EEEEEEEEEEEETTEEEE-EEEEEEEEEEECTTHHHHSCCCEEEECSSBCSSSSCCC
T ss_pred -----------CEEEEEECCCE-EEEEEEEEEEEECCEEEE-EEEEEEEeccccCCCccCCCCCEEEecCCCcccccCCC
Confidence 58999999995 999999999999998877 6 2 2357999999998754
Q ss_pred -h----hhh--hcCCeeEEeecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEee
Q 039965 184 -F----ITQ--MGFPKFSYCISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLN 254 (419)
Q Consensus 184 -~----~~q--l~~~~Fs~~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~ 254 (419)
+ .+| +..++||+||.+.+ ..|.|+|||+|++ |.|++.|+|+... .+|.|.++ |+|+++ .
T Consensus 261 ~~~~~L~~qg~I~~~~FS~~L~~~~~~~G~l~fGgiD~s~y~G~l~~~pv~~~---------~~w~v~l~-I~Vgg~-~- 328 (451)
T 3qvc_A 261 PYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGPLNYEKLNHD---------LMWQVDLD-VHFGNV-S- 328 (451)
T ss_dssp CHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEECSST---------TSSEEEEE-EEETTE-E-
T ss_pred CHHHHHHHcCCCCCCEEEEEEcCCCCCCCEEEECCcchhhcCCceEEEEcccC---------CeeEEEEE-EEECCc-c-
Confidence 3 334 44589999999764 5899999999987 8999999999854 47999999 999998 1
Q ss_pred CCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeE
Q 039965 255 LPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIV 334 (419)
Q Consensus 255 ~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i 334 (419)
.....+++||||+++++|++++++|.+++.+.. ..... .+..+|. . ..+|+|
T Consensus 329 ----------~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~-----~~~~g-----~y~v~C~-~-------~~~P~i 380 (451)
T 3qvc_A 329 ----------SKKANVILDSATSVITVPTEFFNQFVESASVFK-----VPFLS-----LYVTTCG-N-------TKLPTL 380 (451)
T ss_dssp ----------EEEEEEEECTTBSSEEECHHHHHHHHTTTTCEE-----CTTSS-----CEEEETT-C-------TTCCCE
T ss_pred ----------CCCceEEEeCCCccccCCHHHHHHHHHHcCCee-----cCCCC-----eEEeeCC-c-------CcCCcE
Confidence 123579999999999999999999877653211 10011 1234554 2 578999
Q ss_pred EEEEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 335 SLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 335 ~f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
+|+|+|.+++|+|++|+++.. ..++..|+. |++.+.. .+.||||++|||++|+|||++++|||||+++
T Consensus 381 tf~fgg~~i~lp~~~yi~~~~----~~~~~~C~~~i~~~~~~-~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 381 EYRSPNKVYTLEPKQYLEPLE----NIFSALCMLNIVPIDLE-KNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp EEEETTEEEEECHHHHEEECT----TTSTTEEEECEEECCCS-TTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEECCEEEEEcHHHheeecc----cCCCCeEEEEEEeCCCC-CCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 999999999999999999852 123468995 8776532 3579999999999999999999999999975
No 27
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=1.9e-53 Score=406.81 Aligned_cols=285 Identities=16% Similarity=0.259 Sum_probs=233.8
Q ss_pred ccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----C--CCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 039965 49 ANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----V--SFNSIFNPLLSSSYSPVPCNSPTCKIKTQD 122 (419)
Q Consensus 49 ~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~--~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~ 122 (419)
..+|.++.+..|+++|+|| +|+++|+|||||+++||+|..| | ..++.|||++| |++...
T Consensus 8 ~~~l~n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~~~------------ 72 (330)
T 1yg9_A 8 YKLVHVFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYISDG------------ 72 (330)
T ss_dssp CSCEEEEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEEEE------------
T ss_pred EeeeecCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEECC------------
Confidence 3567777788899999999 8999999999999999998877 5 67899999999 998763
Q ss_pred CCCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------C-----CCCcceeeeccCCCCc-------
Q 039965 123 LPVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------E-----DARTTGLMGMNRGSLS------- 183 (419)
Q Consensus 123 ~~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------~-----~~~~~GIlGLg~~~~s------- 183 (419)
|.|.+.|++| .+.|.+++|+|++++.+++++ . ...++||||||++..+
T Consensus 73 ------------~~~~i~Yg~G-s~~G~~~~Dtv~ig~~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~ 139 (330)
T 1yg9_A 73 ------------NVQVKFFDTG-SAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCILSADVVVGIAAPGCPNALKGKT 139 (330)
T ss_dssp ------------EEEEEETTTE-EEEEEEEEEEEEETTEEEEEEEEEEEEEECTHHHHTTCSEEEECSCTTSCCTTSCCC
T ss_pred ------------CEEEEEECCc-eEEEEEEEEEEEECCEEEcCeEEEEEEEcccccccccCceEEEcCcchhccccCCCC
Confidence 4899999999 569999999999999877765 1 1357999999998876
Q ss_pred h----hhh--hcCCeeEEeecCCC-C--CceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEe
Q 039965 184 F----ITQ--MGFPKFSYCISGVD-S--SGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVL 253 (419)
Q Consensus 184 ~----~~q--l~~~~Fs~~l~~~~-~--~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~ 253 (419)
+ .+| + .++||+||.+.. . .|.|+|||+|++ |.|++.|+|+... .+|.|++++|+|+++.+
T Consensus 140 ~~~~l~~qg~i-~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~w~v~l~~i~v~~~~~ 209 (330)
T 1yg9_A 140 VLENFVEENLI-APVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGD---------DSWKFRLDGVKIGDTTV 209 (330)
T ss_dssp HHHHHHHTTSS-CSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBSCT---------TSCCEECSEEEETTEEE
T ss_pred HHHHHHhcCCC-CceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECCCC---------CEEEEEeCeEEECCEEE
Confidence 3 344 4 699999998762 2 899999999987 8999999999853 47999999999999876
Q ss_pred eCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccc-cccccccccCCCCCCCCC
Q 039965 254 NLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGA-MDLCYLIESTGPSLPRLP 332 (419)
Q Consensus 254 ~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~C~~~~~~~~~~~~~P 332 (419)
. ..+..+||||||+++++|++++++|.+++.+.. . .... ..+ ..+|+.. ..+|
T Consensus 210 ~----------~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~-----~-~~g~---~~~~~~~C~~~-------~~~p 263 (330)
T 1yg9_A 210 A----------PAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVV-----E-KTTT---RRICKLDCSKI-------PSLP 263 (330)
T ss_dssp E----------CTTCEEEECTTCSSEEEEHHHHHHHHHHHTCEE-----E-ECSS---CEEEEECGGGG-------GGSC
T ss_pred c----------CCCcEEEEecCCccccCCHHHHHHHHHHhCCcc-----c-CCCc---eEEEEEECCCc-------cccC
Confidence 4 234679999999999999999999988764321 1 1110 012 3467654 5789
Q ss_pred eEEEEEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 333 IVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 333 ~i~f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
+|+|+|+|++++|++++|+++. +..|+. |+... ..+.||||++|||++|+|||++++|||||+++
T Consensus 264 ~i~f~fgg~~~~l~~~~y~~~~--------~~~C~~~i~~~~--~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 264 DVTFVINGRNFNISSQYYIQQN--------GNLCYSGFQPCG--HSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp CEEEEETTEEEEECHHHHEEEE--------TTEEEESEEEET--TCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cEEEEECCEEEEECHHHhcccC--------CCcEEEEEEeCC--CCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 9999999999999999999973 458995 77652 23479999999999999999999999999874
No 28
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=1.4e-52 Score=408.49 Aligned_cols=321 Identities=21% Similarity=0.435 Sum_probs=245.2
Q ss_pred ceEEeeeeeccccccccCCcccccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCccc
Q 039965 29 TLFFPLKTQALAHYYNYRATANKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSP 108 (419)
Q Consensus 29 ~~~~pl~~~~~~~~~~~~~~~~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~ 108 (419)
++.+||++.. .+..|+++|+|||| |+|||||+++||+|.+| .+++.
T Consensus 2 ~~~~pv~~~~-----------------~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~------------~~~~~ 47 (381)
T 1t6e_X 2 PVLAPVTKDP-----------------ATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGG------------QPPAE 47 (381)
T ss_dssp CEEEEEEECT-----------------TTCCEEEEEETTEE-----EEEETTCCCEEECCCTT------------CCCCC
T ss_pred ceEEeEEecC-----------------CCcEEEEEEeCCCE-----EEEECCCCceEEeCCCC------------CCCCc
Confidence 3667888765 45669999999998 99999999999999853 23566
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCC--------CCCC-eeEEecCCCCeeeeEEEEEEEEeCC----CCCCCC---------
Q 039965 109 VPCNSPTCKIKTQDLPVPASCDP--------KGLC-RVTLTYADLTSTEGNLATETILIGG----PARPGF--------- 166 (419)
Q Consensus 109 ~~c~~~~c~~~~~~~~~~~~c~~--------~~~~-~~~~~Y~~gs~~~G~~~~D~v~~g~----~~~~~~--------- 166 (419)
+.|.+..|...++. .+..|.. ++.| .|.+.|++|+.+.|.+++|+|++++ ..++++
T Consensus 48 ~~C~s~~C~~~~~~--~~~sc~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~~~~~~~~Fg~~ 125 (381)
T 1t6e_X 48 IPCSSPTCLLANAY--PAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACA 125 (381)
T ss_dssp CBTTSHHHHHHHSS--CCTTCCCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEEC
T ss_pred cCCCCchhccccCC--CCCCCCCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccCCCccccceeeeeEeecC
Confidence 78888888653321 1224542 2467 5999999997789999999999984 222221
Q ss_pred -------CCCCcceeeeccCCCCchhhhhc-----CCeeEEeecCCCCCceEEeCCCCc---cCCCCcccccccccCCCC
Q 039965 167 -------EDARTTGLMGMNRGSLSFITQMG-----FPKFSYCISGVDSSGVLLFGDASF---AWLKPLSYTPLVRISKPL 231 (419)
Q Consensus 167 -------~~~~~~GIlGLg~~~~s~~~ql~-----~~~Fs~~l~~~~~~G~l~fGg~d~---~~~g~l~~~p~~~~~~~~ 231 (419)
....++||||||++.++++.|+. .++||+||.+. ..|.|+|||++. +|.|++.|+|++..+.
T Consensus 126 ~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~-~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~-- 202 (381)
T 1t6e_X 126 PSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTG-GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGG-- 202 (381)
T ss_dssp CGGGGTTSCTTEEEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSS-SCEEEEESCCSCSCHHHHTTCCEEECBCCTT--
T ss_pred cccccCCCCCCCceEEEeCCCcchhHHHHhhhcccCceEEEEeCCC-CCeeEEeCCcccccccccCcceeeccccCCC--
Confidence 12568999999999999998875 38999999875 689999999875 3689999999987531
Q ss_pred CCCCCeeEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhc-------ccccc
Q 039965 232 PYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKG-------ILRVF 304 (419)
Q Consensus 232 ~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~-------~~~~~ 304 (419)
..+|.|++++|+|+++.+.++...+. ++++||||||++++||+++|++|.+++.+++.. ..+..
T Consensus 203 ----~~~y~v~l~~i~vg~~~~~~~~~~~~-----~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~ 273 (381)
T 1t6e_X 203 ----SPAHYISARSIVVGDTRVPVPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAV 273 (381)
T ss_dssp ----CCSCEECEEEEEETTEECCCCTTCSC-----TTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEE
T ss_pred ----CcceEEEEEEEEEcCEEecCCHHHcc-----CCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccC
Confidence 12466999999999998876554332 467999999999999999999999999887741 11110
Q ss_pred CCCccccccccccccccccCCC--CCCCCCeEEEEEc-CcEEEEcccceeEEecCccCCCCceEEEEEEcCCC-----CC
Q 039965 305 DDPNFVFQGAMDLCYLIESTGP--SLPRLPIVSLMFS-GAEMSVSGERLLYRVPGLSRGRDSVYCFTFGNSDL-----LG 376 (419)
Q Consensus 305 ~~~~~~~~~~~~~C~~~~~~~~--~~~~~P~i~f~f~-g~~~~i~~~~y~~~~~~~~~~~~~~~C~~i~~~~~-----~~ 376 (419)
... .++..|+..++... ....+|+|+|+|+ |++++|++++|+++. .++..|++|+.... ..
T Consensus 274 ~~~-----~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~------~~~~~Cl~~~~~~~~~~~~~~ 342 (381)
T 1t6e_X 274 EAV-----APFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDV------KQGTACVAFVEMKGVAAGDGR 342 (381)
T ss_dssp CCC-----TTCSCEEEGGGCCEETTEECCCCEEEEETTSCEEEECHHHHEEEE------ETTEEEESEEECCCCC-----
T ss_pred CCC-----CCCCccCCCCCCcccccCCcCCeEEEEECCCcEEEeCCCeEEEEc------CCCeEEEEEEcCCCcccccCC
Confidence 110 13568998764210 0136899999998 599999999999985 34678999887653 12
Q ss_pred CceeeeeccceeeeEEEEECCCCEEEEEcCCC
Q 039965 377 IEAFVIGHHHQQNLWVEFDLINSRVGFAEVRC 408 (419)
Q Consensus 377 ~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c 408 (419)
.+.||||+.|||++|+|||++++|||||+++.
T Consensus 343 ~~~~ILGd~fl~~~yvvfD~~~~riGfA~~~~ 374 (381)
T 1t6e_X 343 APAVILGGAQMEDFVLDFDMEKKRLGFSRLPH 374 (381)
T ss_dssp -CSEEECHHHHTTEEEEEETTTTEEEEEECCT
T ss_pred CceEEEChHHhCCcEEEEECCCCEEEEecccC
Confidence 25799999999999999999999999999764
No 29
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=9.5e-53 Score=401.22 Aligned_cols=282 Identities=19% Similarity=0.343 Sum_probs=226.8
Q ss_pred cceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 039965 56 HNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDP 131 (419)
Q Consensus 56 ~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~ 131 (419)
.+..|+++|+|| +|+++|+|||||+++||+|.+| |..++.|+|++|+ ++..
T Consensus 12 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~---------------------- 66 (325)
T 1ibq_A 12 NDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSA-TKLS---------------------- 66 (325)
T ss_dssp TTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSC-EECT----------------------
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcC-CccC----------------------
Confidence 467799999999 9999999999999999999886 4668999999998 4432
Q ss_pred CCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch-------------h
Q 039965 132 KGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF-------------I 185 (419)
Q Consensus 132 ~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~-------------~ 185 (419)
.|.|.+.|++|+.+.|.+++|+|++++.+++++ .....+||||||++..+. .
T Consensus 67 --~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~ 144 (325)
T 1ibq_A 67 --GYSWDISYGDGSSASGDVYRDTVTVGGVTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFFDTVK 144 (325)
T ss_dssp --TCBEEEECSSSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCCCCHHHHHG
T ss_pred --CCEEEEEeCCCCEEEEEEEEeEEEECCEEEcceEEEEEEecCccccccCCCceEEEeCcccccccCcCCCCCHHHHHH
Confidence 368999999997799999999999999887765 125789999999876542 2
Q ss_pred hhhcCCeeEEeecCCCCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCC
Q 039965 186 TQMGFPKFSYCISGVDSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDH 264 (419)
Q Consensus 186 ~ql~~~~Fs~~l~~~~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~ 264 (419)
+|+..++||+||.+. ..|.|+|||+|++ |.|++.|+|+... ..+|.|++++|+|+++.+.
T Consensus 145 ~~i~~~~FS~~l~~~-~~G~l~fGg~d~~~~~g~l~~~p~~~~--------~~~w~v~l~~i~v~~~~~~---------- 205 (325)
T 1ibq_A 145 SQLDSPLFAVQLKHD-APGVYDFGYIDDSKYTGSITYTDADSS--------QGYWGFSTDGYSIGDGSSS---------- 205 (325)
T ss_dssp GGSSSSEEEEEEETT-EEEEEEESSCCGGGBSSCCEEEECBCT--------TSSCEEEECEEEETTSCCB----------
T ss_pred HhcCCcEEEEEecCC-CCceEEECCcChhhccCceEEEEcCCC--------CceEEEEECcEEECCeecc----------
Confidence 345569999999863 5899999999987 8999999999853 2479999999999997652
Q ss_pred CCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEEE
Q 039965 265 TGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMS 344 (419)
Q Consensus 265 ~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~ 344 (419)
..+..+||||||++++||++++++|.+++. +......... +..+|+ ..+|+|+|+|+|++++
T Consensus 206 ~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~----~a~~~~~~g~-----~~~~C~---------~~~P~i~f~fgg~~~~ 267 (325)
T 1ibq_A 206 SSGFSAIADTGTTLILLDDEIVSAYYEQVS----GAQESYEAGG-----YVFSCS---------TDLPDFTVVIGDYKAV 267 (325)
T ss_dssp SCCEEEEECTTCCSEEECHHHHHHHHTTST----TCBCCSSSSS-----CEEETT---------CCCCCEEEEETTEEEE
T ss_pred CCCceEEEeCCCCcEeCCHHHHHHHHHhCC----CceEcCcCCe-----EEEEcC---------CCCCcEEEEECCEEEE
Confidence 234679999999999999999999876552 1111111111 234564 3679999999999999
Q ss_pred EcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 345 VSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 345 i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
|++++|+++.. ..+...|++ |+..+ ..+.||||++|||++|+|||++++|||||+++
T Consensus 268 i~~~~~~~~~~----~~~~~~C~~~i~~~~--~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 268 VPGKYINYAPV----STGSSTCYGGIQSNS--GLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp ECHHHHEEEES----STTCSEEEESEEECT--TTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ECHHHhccccc----CCCCCeEEEEEEcCC--CCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 99999998741 123468997 77654 23479999999999999999999999999874
No 30
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=2e-53 Score=419.28 Aligned_cols=287 Identities=21% Similarity=0.358 Sum_probs=233.9
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPV 125 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~ 125 (419)
.+|.++.+..|+++|+||||+|++.|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 130 ~~L~n~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~--------------- 194 (453)
T 2bju_A 130 IELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDG--------------- 194 (453)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEE---------------
T ss_pred eeeEecCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECC---------------
Confidence 456677788999999999999999999999999999998876 5568899999999998864
Q ss_pred CCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------CC--------CCcceeeeccCCCCch------
Q 039965 126 PASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------ED--------ARTTGLMGMNRGSLSF------ 184 (419)
Q Consensus 126 ~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------~~--------~~~~GIlGLg~~~~s~------ 184 (419)
|.|.+.|++|+ +.|.+++|+|++|+.+++ + .. ...+||||||++..+.
T Consensus 195 ---------~~~~i~YgdGs-~~G~~~~Dtv~ig~~~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~ 263 (453)
T 2bju_A 195 ---------TKVEMNYVSGT-VSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPI 263 (453)
T ss_dssp ---------EEEEEECSSSE-EEEEEEEEEEEETTEEEE-EEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCH
T ss_pred ---------cEEEEEcCCCC-eEEEEEEEEEEEeCcEEE-EEEEEEEEecccCccccccCCceeEeccCCcccccCCCcH
Confidence 58999999995 899999999999998777 6 22 3589999999987653
Q ss_pred ----hhh--hcCCeeEEeecCCC-CCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCC
Q 039965 185 ----ITQ--MGFPKFSYCISGVD-SSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLP 256 (419)
Q Consensus 185 ----~~q--l~~~~Fs~~l~~~~-~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~ 256 (419)
.+| +..++||+||.+.+ ..|.|+|||+|++ |.|++.|+|+... .+|.|.++ |+|+++ + .
T Consensus 264 ~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~G~l~~~pv~~~---------~~w~V~l~-I~Vgg~-~-~- 330 (453)
T 2bju_A 264 VVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHD---------LYWQITLD-AHVGNI-M-L- 330 (453)
T ss_dssp HHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEEEEEEEEEEE---------TTEEEEEE-EEETTE-E-E-
T ss_pred HHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHHHcCCceEEEecCCC---------ceEEEEEE-EEECcE-E-e-
Confidence 234 44599999998753 6899999999987 8999999999864 37999999 999993 3 1
Q ss_pred CcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEE
Q 039965 257 KSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSL 336 (419)
Q Consensus 257 ~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f 336 (419)
.+..+||||||+++++|++++++|.+++.+ .. ..... .+..+|+. ..+|+|+|
T Consensus 331 ---------~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~-----~~-~~~g~----~~~v~C~~--------~~~P~itf 383 (453)
T 2bju_A 331 ---------EKANCIVDSGTSAITVPTDFLNKMLQNLDV-----IK-VPFLP----FYVTLCNN--------SKLPTFEF 383 (453)
T ss_dssp ---------EEEEEEECTTCCSEEECHHHHHHHTTTSSC-----EE-CTTSS----CEEEETTC--------TTCCCEEE
T ss_pred ---------ccccEEEcCCCCeEecCHHHHHHHHHHhCC-----cc-cCCCc----eEEEecCC--------CCCCcEEE
Confidence 135799999999999999999998765532 11 11110 12445653 36899999
Q ss_pred EEcCcEEEEcccceeEEecCccCCCCceEEE-EEEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 337 MFSGAEMSVSGERLLYRVPGLSRGRDSVYCF-TFGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 337 ~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~-~i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
+|+|.+++|+|++|+++.. ..+...|+ +|++.+.. .+.||||++|||++|+|||++++|||||+++
T Consensus 384 ~fgg~~~~l~~~~yi~~~~----~~g~~~C~~~~~~~~~~-~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 384 TSENGKYTLEPEYYLQHIE----DVGPGLCMLNIIGLDFP-VPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp ECSSCEEEECHHHHEEECT----TTSTTEEEECEEECCCS-SCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EECCEEEEECHHHhEeecc----cCCCceEEEEEEeCCCC-CCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 9999999999999999851 11346899 48876532 2479999999999999999999999999976
No 31
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=7.6e-53 Score=401.38 Aligned_cols=279 Identities=20% Similarity=0.302 Sum_probs=226.5
Q ss_pred cceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 039965 56 HNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDP 131 (419)
Q Consensus 56 ~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~ 131 (419)
.+..|+++|+|| +|+++|+|||||+++||+|.+| |..++.|+|++|+ ++..
T Consensus 13 ~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~---------------------- 67 (323)
T 1izd_A 13 NDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSA-QKID---------------------- 67 (323)
T ss_dssp GGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTC-EEEE----------------------
T ss_pred CCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccC-CccC----------------------
Confidence 567799999999 8999999999999999999886 4568999999999 5533
Q ss_pred CCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch-------------h
Q 039965 132 KGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF-------------I 185 (419)
Q Consensus 132 ~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~-------------~ 185 (419)
.|.|.+.|++|+.+.|.+++|+|++++.+++++ .....+||||||++..+. .
T Consensus 68 --~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~ 145 (323)
T 1izd_A 68 --GATWSISYGDGSSASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVK 145 (323)
T ss_dssp --EEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHG
T ss_pred --CCeEEEEcCCCCeEEEEEEEEEEEECCEEECceEEEEEEeccccccccCCCceEEecCcccccccCCCCCCCHHHHHH
Confidence 268999999997799999999999999887765 115789999999976543 2
Q ss_pred hhhcCCeeEEeecCCCCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCC
Q 039965 186 TQMGFPKFSYCISGVDSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDH 264 (419)
Q Consensus 186 ~ql~~~~Fs~~l~~~~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~ 264 (419)
+|+..++||+||.+. ..|.|+|||+|++ |.|++.|+|+... ..+|.|++++|+|++ .+.
T Consensus 146 ~~i~~~~FS~~L~~~-~~G~l~fGg~d~~~~~g~l~~~p~~~~--------~~~w~v~l~~i~v~~-~~~---------- 205 (323)
T 1izd_A 146 SSLSEPIFAVALKHN-APGVYDFGYTDSSKYTGSITYTDVDNS--------QGFWGFTADGYSIGS-DSS---------- 205 (323)
T ss_dssp GGSSSSEEEEECCTT-SCEEEEESSCCTTSEEEEEEEEECBCT--------TSSCEEEESEEEETT-EEE----------
T ss_pred HhccCcEEEEEccCC-CCCEEEECCcCccccccceEEEECCCC--------CceEEEEECeEEECC-ccc----------
Confidence 456669999999864 6899999999987 8999999999753 247999999999999 442
Q ss_pred CCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEEE
Q 039965 265 TGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMS 344 (419)
Q Consensus 265 ~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~ 344 (419)
..+..+||||||+++++|++++++|.+++. +......... +..+|+ ..+|+|+|+|+|++++
T Consensus 206 ~~~~~aiiDSGTs~~~lp~~~~~~i~~~i~----ga~~~~~~g~-----~~~~C~---------~~~P~i~f~fgg~~~~ 267 (323)
T 1izd_A 206 SDSITGIADTGTTLLLLDDSIVDAYYEQVN----GASYDSSQGG-----YVFPSS---------ASLPDFSVTIGDYTAT 267 (323)
T ss_dssp CCCEEEEECTTCCSEEECHHHHHHHHTTST----TCEEETTTTE-----EEEETT---------CCCCCEEEEETTEEEE
T ss_pred CCCceEEEeCCCcceeCCHHHHHHHHHhCC----CcEEcCcCCE-----EEEECC---------CCCceEEEEECCEEEe
Confidence 234679999999999999999999876552 1111111111 133554 3689999999999999
Q ss_pred EcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 345 VSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 345 i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
|++++|+++. .++..|++ |+..+ ..+.||||++|||++|+|||++++|||||+++
T Consensus 268 i~~~~~~~~~------~~~~~C~~~i~~~~--~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 268 VPGEYISFAD------VGNGQTFGGIQSNS--GIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp ECHHHHEEEE------CSTTEEEESEEECT--TTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cCHHHeEEec------CCCCeEEEEEEcCC--CCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 9999999874 34568997 87754 23579999999999999999999999999864
No 32
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=1.1e-52 Score=400.46 Aligned_cols=279 Identities=22% Similarity=0.341 Sum_probs=225.1
Q ss_pred cceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 039965 56 HNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDP 131 (419)
Q Consensus 56 ~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~ 131 (419)
.+..|+++|+|| +|++.|+|||||+++||+|.+| |..++.|||++|+ ++..
T Consensus 13 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~---------------------- 67 (323)
T 1bxo_A 13 NDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATG-KELS---------------------- 67 (323)
T ss_dssp GGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHC-EEEE----------------------
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCC-cccC----------------------
Confidence 567799999999 9999999999999999999886 4678999999998 5543
Q ss_pred CCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCch-------------h
Q 039965 132 KGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLSF-------------I 185 (419)
Q Consensus 132 ~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s~-------------~ 185 (419)
.|.|.+.|++|+.+.|.+++|+|++++.+++++ .....+||||||++..+. .
T Consensus 68 --~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~ 145 (323)
T 1bxo_A 68 --GYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVK 145 (323)
T ss_dssp --EEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHHG
T ss_pred --CCeEEEEeCCCCeEEEEEEEEEEEECCEEECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCCCCCHHHHHH
Confidence 268999999997799999999999999877765 125789999999876543 2
Q ss_pred hhhcCCeeEEeecCCCCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcccccCC
Q 039965 186 TQMGFPKFSYCISGVDSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDH 264 (419)
Q Consensus 186 ~ql~~~~Fs~~l~~~~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~ 264 (419)
+|+..++||+||.+ +..|.|+|||+|++ |.|++.|+|+.... .+|.|++++|+|++ ..
T Consensus 146 ~~i~~~~FS~~L~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~--------~~w~v~l~~i~v~~-~~----------- 204 (323)
T 1bxo_A 146 SSLAQPLFAVALKH-QQPGVYDFGFIDSSKYTGSLTYTGVDNSQ--------GFWSFNVDSYTAGS-QS----------- 204 (323)
T ss_dssp GGBSSSEEEEECCS-SSCEEEEESSCCGGGBSSCCEEEECBCTT--------SSCEEEEEEEEETT-EE-----------
T ss_pred HhcCCcEEEEEEeC-CCCceEEEeCcChhhccCceEEEECCCCC--------CeEEEEEeeEEECC-cc-----------
Confidence 45666999999986 36899999999987 89999999997532 47999999999999 21
Q ss_pred CCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCcEEE
Q 039965 265 TGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMS 344 (419)
Q Consensus 265 ~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~ 344 (419)
..+..+||||||+++++|++++++|.+++. +......... +..+|+ ..+|+|+|+|+|++++
T Consensus 205 ~~~~~aiiDSGTs~~~lP~~~~~~l~~~i~----~a~~~~~~g~-----~~~~C~---------~~~P~i~f~fgg~~~~ 266 (323)
T 1bxo_A 205 GDGFSGIADTGTTLLLLDDSVVSQYYSQVS----GAQQDSNAGG-----YVFDCS---------TNLPDFSVSISGYTAT 266 (323)
T ss_dssp EEEEEEEECTTCSSEEECHHHHHHHHTTST----TCEEETTTTE-----EEECTT---------CCCCCEEEEETTEEEE
T ss_pred CCCceEEEeCCCCceeCCHHHHHHHHHhCC----CceEcCcCCE-----EEEECC---------CCCceEEEEECCEEEE
Confidence 123579999999999999999999876552 1111111111 234564 3679999999999999
Q ss_pred EcccceeEEecCccCCCCceEEEE-EEcCCCCCCceeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 345 VSGERLLYRVPGLSRGRDSVYCFT-FGNSDLLGIEAFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 345 i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
|++++|+++.. .+...|++ |+..+. .+.||||++|||++|+|||++++|||||+++
T Consensus 267 l~~~~~~~~~~-----~~~~~C~~~i~~~~~--~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 267 VPGSLINYGPS-----GDGSTCLGGIQSNSG--IGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp ECHHHHEEEEC-----SSSSCEEESEEECTT--CSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ECHHHeEEecc-----CCCCeEEEEEECCCC--CCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 99999998741 23368997 777642 3479999999999999999999999999874
No 33
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=1.6e-51 Score=395.37 Aligned_cols=289 Identities=18% Similarity=0.293 Sum_probs=224.3
Q ss_pred ceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 039965 57 NVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTVSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLPVPASCDPKGLCR 136 (419)
Q Consensus 57 ~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~~~~~c~~~~~~~ 136 (419)
+..|+++|+||||+|++.|+|||||+++||+|. +.|+|++|+++. .|.
T Consensus 11 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~------~~y~~s~Ss~~~--------------------------~~~ 58 (340)
T 1wkr_A 11 LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD------KSYVKTSTSSAT--------------------------SDK 58 (340)
T ss_dssp SSCEEEEEEETTTTEEEEEEEETTCCCCEECSS------SCCCCCTTCEEE--------------------------EEE
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCChhheecCC------CccCCcCCcccc--------------------------Cce
Confidence 346999999999999999999999999999985 589998887642 258
Q ss_pred eEEecCCCCeeeeEEEEEEEEeCCCCCCCC---------CCCCcceeeeccCCCCch--------------hhh------
Q 039965 137 VTLTYADLTSTEGNLATETILIGGPARPGF---------EDARTTGLMGMNRGSLSF--------------ITQ------ 187 (419)
Q Consensus 137 ~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~---------~~~~~~GIlGLg~~~~s~--------------~~q------ 187 (419)
|.+.|++|+ +.|.+++|+|++++.+++++ ....++||||||+...++ +.+
T Consensus 59 ~~i~Yg~Gs-~~G~~~~Dtv~~g~~~v~~~~fg~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~~~l~~~g~ 137 (340)
T 1wkr_A 59 VSVTYGSGS-FSGTEYTDTVTLGSLTIPKQSIGVASRDSGFDGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGT 137 (340)
T ss_dssp EEEECSSCE-EEEEEEEEEEEETTEEEEEEEEEEEEEEESCTTCSEEEECSCGGGGTTSEESCTTCCCCCHHHHHHHTTS
T ss_pred EEEEECCcE-EEEEEEEEEEEECCEEEcceEEEEEEccCCCcCCCcEEECCccccccccccccccccCCCHHHHHHHcCC
Confidence 999999994 99999999999999877765 123689999999876543 333
Q ss_pred hcCCeeEEeecCC----CCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECC-EEeeCCCcccc
Q 039965 188 MGFPKFSYCISGV----DSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGS-KVLNLPKSVFI 261 (419)
Q Consensus 188 l~~~~Fs~~l~~~----~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~-~~~~~~~~~~~ 261 (419)
+..++||+||.+. ...|.|+|||+|++ |.|++.|+|+..... ...+|.|. ++|+|++ +.+..
T Consensus 138 i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~-----~~~~w~v~-~~i~v~~~~~l~~------ 205 (340)
T 1wkr_A 138 IPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSP-----ASAYWGIN-QSIRYGSSTSILS------ 205 (340)
T ss_dssp SSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTT-----GGGSSEEE-EEEEETTTEEEEE------
T ss_pred CCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCC-----CcceEEEE-eeEEECCCeEccC------
Confidence 3348999999863 25799999999987 899999999987521 13589999 9999998 77631
Q ss_pred cCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccccccccccccccccCCCCCCCCCeEEEEEcCc
Q 039965 262 PDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFVFQGAMDLCYLIESTGPSLPRLPIVSLMFSGA 341 (419)
Q Consensus 262 ~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~ 341 (419)
+..+||||||++++||++++++|.+++.+... .... .+..+|... ..+|+|+|+|+|.
T Consensus 206 -----~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~-----~~~g-----~~~~~C~~~-------~~~p~i~f~f~g~ 263 (340)
T 1wkr_A 206 -----STAGIVDTGTTLTLIASDAFAKYKKATGAVAD-----NNTG-----LLRLTTAQY-------ANLQSLFFTIGGQ 263 (340)
T ss_dssp -----EEEEEECTTBCSEEECHHHHHHHHHHHTCEEC-----TTTS-----SEEECHHHH-------HTCCCEEEEETTE
T ss_pred -----CCeEEEeCCcccccCCHHHHHHHHHhhCCEEc-----CCCC-----eEEeecccc-------ccCCcEEEEECCE
Confidence 24699999999999999999999776643211 0111 124567654 4689999999999
Q ss_pred EEEEcccceeEEecCcc-CCCCceEEE-EEEcCCCC--CCceeeeeccceeeeEEEEECCCCEEEEEcCCCCccc
Q 039965 342 EMSVSGERLLYRVPGLS-RGRDSVYCF-TFGNSDLL--GIEAFVIGHHHQQNLWVEFDLINSRVGFAEVRCDIAS 412 (419)
Q Consensus 342 ~~~i~~~~y~~~~~~~~-~~~~~~~C~-~i~~~~~~--~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~c~~~~ 412 (419)
+++|+|++|+++..... .+.....|+ ++...... .+..||||++|||++|+|||++++|||||+++|+...
T Consensus 264 ~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~~~ 338 (340)
T 1wkr_A 264 TFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFTTAT 338 (340)
T ss_dssp EEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTTTCC
T ss_pred EEEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCCCCC
Confidence 99999999998642100 011224576 47653321 2246999999999999999999999999999998654
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=1.2e-41 Score=310.02 Aligned_cols=203 Identities=20% Similarity=0.335 Sum_probs=173.2
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCC-----CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKT-----VSFNSIFNPLLSSSYSPVPCNSPTCKIKTQDLP 124 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~-----~~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~~ 124 (419)
.+|.++.+..|+++|.||||+|++.|+|||||+++||+|..| |..++.|+|++|+|++...
T Consensus 5 ~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~-------------- 70 (239)
T 1b5f_A 5 VALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENG-------------- 70 (239)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTSCCBCGGGCTTCEEEE--------------
T ss_pred eeeeecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCCCCCCCccCCCeeeCC--------------
Confidence 456777788899999999999999999999999999998876 4558899999999998864
Q ss_pred CCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCCCCCCCC-------------CCCCcceeeeccCCCCc------hh
Q 039965 125 VPASCDPKGLCRVTLTYADLTSTEGNLATETILIGGPARPGF-------------EDARTTGLMGMNRGSLS------FI 185 (419)
Q Consensus 125 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~~~~~~~-------------~~~~~~GIlGLg~~~~s------~~ 185 (419)
|.|.+.|++| .+.|.+++|+|++++.+++++ ....++||||||+...+ +.
T Consensus 71 ----------~~~~i~Yg~G-s~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~p~~~~l~ 139 (239)
T 1b5f_A 71 ----------TFGAIIYGTG-SITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSFQTISVPVWYNML 139 (239)
T ss_dssp ----------EEEEEECSSC-EEEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSSSCCHHHHHH
T ss_pred ----------cEEEEEECCC-cEEEEEEEEEEEECCcEEccEEEEEEEeccCccccccCcceEEecCccccccHHHHHHH
Confidence 5799999999 589999999999998777654 23467999999999877 34
Q ss_pred hh--hcCCeeEEeecCC---CCCceEEeCCCCcc-CCCCcccccccccCCCCCCCCCeeEEEEeeeEEECCEEeeCCCcc
Q 039965 186 TQ--MGFPKFSYCISGV---DSSGVLLFGDASFA-WLKPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVGSKVLNLPKSV 259 (419)
Q Consensus 186 ~q--l~~~~Fs~~l~~~---~~~G~l~fGg~d~~-~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 259 (419)
+| +..++||+||.+. ...|.|+|||+|++ |.|++.|+|+... .+|.|.+++|+|+++.+.+.
T Consensus 140 ~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---------~~~~v~l~~i~v~~~~~~~~--- 207 (239)
T 1b5f_A 140 NQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQ---------YYWQFGIGDVLIGDKSTGFC--- 207 (239)
T ss_dssp HTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEEEE---------TTEEEEECCEEETTEECCTT---
T ss_pred HCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEcccC---------CeEEEEeeEEEECCEEeccc---
Confidence 44 4459999999874 36899999999987 8999999999864 37999999999999987542
Q ss_pred cccCCCCCCcEEEecccccccccHHHHHHHHHHHH
Q 039965 260 FIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFI 294 (419)
Q Consensus 260 ~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~ 294 (419)
..+..++|||||++++||++++++|.+++.
T Consensus 208 -----~~~~~aiiDTGTt~~~lP~~~~~~i~~~ig 237 (239)
T 1b5f_A 208 -----APGCQAFADSGTSLLSGPTAIVTQINHAIG 237 (239)
T ss_dssp -----TTCEEEEECTTCSSEEECHHHHHHHHHHTT
T ss_pred -----CCCCEEEEecCcchhhCCHHHHHHHHHHhC
Confidence 234679999999999999999999987653
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=3.7e-35 Score=267.98 Aligned_cols=201 Identities=23% Similarity=0.358 Sum_probs=159.0
Q ss_pred CCCCcceeeeccCCCCch------h----hh--hcCCeeEEeecCCC-C--CceEEeCCCCcc-CCCCcccccccccCCC
Q 039965 167 EDARTTGLMGMNRGSLSF------I----TQ--MGFPKFSYCISGVD-S--SGVLLFGDASFA-WLKPLSYTPLVRISKP 230 (419)
Q Consensus 167 ~~~~~~GIlGLg~~~~s~------~----~q--l~~~~Fs~~l~~~~-~--~G~l~fGg~d~~-~~g~l~~~p~~~~~~~ 230 (419)
....++||||||++..+. + +| +..++||+||.+.+ . .|.|+|||+|++ |.|++.|+|+...
T Consensus 22 ~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~--- 98 (241)
T 1lya_B 22 IAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRK--- 98 (241)
T ss_dssp TSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSCCGGGEEEEEEEEECSSB---
T ss_pred ccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCcCHHHcCCceEEEECccc---
Confidence 345789999999987652 2 33 44599999998764 2 899999999987 8999999999864
Q ss_pred CCCCCCeeEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHHHHHHHHHHHHHhhccccccCCCccc
Q 039965 231 LPYFDRVAYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEVYSALKNEFIQQTKGILRVFDDPNFV 310 (419)
Q Consensus 231 ~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 310 (419)
.+|.|++++|+|+++.+. +..+..+++||||+++++|++++++|.+++.+.. . ....
T Consensus 99 ------~~~~v~l~~i~v~~~~~~---------~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~-----~-~~g~-- 155 (241)
T 1lya_B 99 ------AYWQVHLDQVEVASGLTL---------CKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVP-----L-IQGE-- 155 (241)
T ss_dssp ------TTBEEEEEEEEETTSCEE---------STTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-----E-ETTE--
T ss_pred ------cEEEEEEeEEEECCeeEe---------ccCCCEEEEECCCccccCCHHHHHHHHHHhCCee-----c-cCCc--
Confidence 479999999999997642 1345679999999999999999999988764321 1 1111
Q ss_pred cccccccccccccCCCCCCCCCeEEEEEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCCC--CCceeeeeccce
Q 039965 311 FQGAMDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDLL--GIEAFVIGHHHQ 387 (419)
Q Consensus 311 ~~~~~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~~--~~~~~iLG~~fl 387 (419)
+..+|+.. ..+|+|+|+|+|++++|++++|+++.. ..++..|+. |+..+.. ..+.||||++||
T Consensus 156 ---~~~~C~~~-------~~~p~i~f~f~g~~~~l~~~~y~~~~~----~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl 221 (241)
T 1lya_B 156 ---YMIPCEKV-------STLPAITLKLGGKGYKLSPEDYTLKVS----QAGKTLCLSGFMGMDIPPPSGPLWILGDVFI 221 (241)
T ss_dssp ---EEEEGGGG-------GGSCCEEEEETTEEEEECTTTSEEEET----TTTSSEEEESEEECCCCTTTCCCEEECHHHH
T ss_pred ---EEEECCCC-------ccCCeEEEEECCEEEEECHHHhEEEcc----CCCCCeeEEEEEecccCCCCCCeEEechHHh
Confidence 24578765 578999999999999999999999852 123568995 8876421 235799999999
Q ss_pred eeeEEEEECCCCEEEEEcCC
Q 039965 388 QNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 388 ~~~y~vfD~~~~riGfa~~~ 407 (419)
|++|+|||++++|||||+++
T Consensus 222 ~~~y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 222 GRYYTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp TTEEEEEETTTTEEEEEEEC
T ss_pred cceEEEEECCCCEEEEEEcC
Confidence 99999999999999999975
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.89 E-value=2.8e-23 Score=160.06 Aligned_cols=86 Identities=23% Similarity=0.328 Sum_probs=76.3
Q ss_pred cccccccceeEEEEEEeCCCCceEEEEEeCCCCeeeecCCCCC------CCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 039965 50 NKLSFHHNVSLTVSLKLGSPPQDVTMVLDTGSELSWLHCKKTV------SFNSIFNPLLSSSYSPVPCNSPTCKIKTQDL 123 (419)
Q Consensus 50 ~~l~~~~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~c~~~~------~~~~~f~~~~SsT~~~~~c~~~~c~~~~~~~ 123 (419)
.+|.++.+..|+++|.||||+|++.|+|||||+++||+|..|. ..++.|+|++|+|++...
T Consensus 5 ~~l~n~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~~~~y~p~~SsT~~~~~------------- 71 (97)
T 1lya_A 5 EVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNG------------- 71 (97)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHTSCCBCGGGCTTCEEEE-------------
T ss_pred EeeEECCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCCCCCCCchhCCCceeCC-------------
Confidence 3456667888999999999999999999999999999988763 357899999999999874
Q ss_pred CCCCCCCCCCCCeeEEecCCCCeeeeEEEEEEEEeCC
Q 039965 124 PVPASCDPKGLCRVTLTYADLTSTEGNLATETILIGG 160 (419)
Q Consensus 124 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~g~ 160 (419)
|.|.+.|++|+ +.|.+++|+|+|++
T Consensus 72 -----------~~~~i~Yg~Gs-~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 72 -----------TSFDIHYGSGS-LSGYLSQDTVSVPC 96 (97)
T ss_dssp -----------EEEEEECSSCE-EEEEEEEEEEEESC
T ss_pred -----------CcEEEEECCcE-EEEEEEEEEEEECC
Confidence 58999999995 99999999999986
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.74 E-value=4.6e-18 Score=128.67 Aligned_cols=82 Identities=24% Similarity=0.404 Sum_probs=67.1
Q ss_pred cccccccccCCCCCCCCCeEEEEEcCcEEEEcccceeEEecCccCCCCceEEEE-EEcCCC-CCCceeeeeccceeeeEE
Q 039965 315 MDLCYLIESTGPSLPRLPIVSLMFSGAEMSVSGERLLYRVPGLSRGRDSVYCFT-FGNSDL-LGIEAFVIGHHHQQNLWV 392 (419)
Q Consensus 315 ~~~C~~~~~~~~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~~~~~~~~~~~C~~-i~~~~~-~~~~~~iLG~~fl~~~y~ 392 (419)
..+|... ..+|+|+|+|+|++++|+|++|+++.. ..+...|++ |+..+. ...+.||||++|||++|+
T Consensus 4 ~v~C~~~-------~~~P~i~f~~gg~~~~l~~~~yi~~~~----~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~ 72 (87)
T 1b5f_B 4 QVDCNTL-------SSMPNVSFTIGGKKFGLTPEQYILKVG----KGEATQCISGFTAMDATLLGPLWILGDVFMRPYHT 72 (87)
T ss_dssp EECGGGG-------GGCCCEEEEETTEEEEECHHHHEEEES----CTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEE
T ss_pred EEECCCC-------CcCCcEEEEECCEEEEECHHHhEEEcc----CCCCCEEEEEEEECCCCCCCCeEEechHHhccEEE
Confidence 5578665 578999999999999999999999851 122468995 887543 134589999999999999
Q ss_pred EEECCCCEEEEEcCC
Q 039965 393 EFDLINSRVGFAEVR 407 (419)
Q Consensus 393 vfD~~~~riGfa~~~ 407 (419)
|||.+++|||||+++
T Consensus 73 vfD~~~~riGfA~~~ 87 (87)
T 1b5f_B 73 VFDYGNLLVGFAEAA 87 (87)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEECCCCEEEEEEcC
Confidence 999999999999874
No 38
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=93.64 E-value=0.22 Score=40.38 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=24.7
Q ss_pred eeeeeccceeeeEEEEECCCCEEEEEc
Q 039965 379 AFVIGHHHQQNLWVEFDLINSRVGFAE 405 (419)
Q Consensus 379 ~~iLG~~fl~~~y~vfD~~~~riGfa~ 405 (419)
..|||..||+++-...|+.+++|-|..
T Consensus 109 d~iLG~d~L~~~~~~ID~~~~~l~l~~ 135 (148)
T 2i1a_A 109 DVLIGLDMLKRHLACVDLKENVLRIAE 135 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEEETT
T ss_pred CeEecHHHHhhCCEEEECCCCEEEEcc
Confidence 379999999999999999999999864
No 39
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=91.34 E-value=0.61 Score=37.81 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=25.9
Q ss_pred eeeeeccceeeeEEEEECCCCEEEEEcCC
Q 039965 379 AFVIGHHHQQNLWVEFDLINSRVGFAEVR 407 (419)
Q Consensus 379 ~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 407 (419)
..|||..||+.+-.+.|++++++-|...+
T Consensus 108 d~LLGmD~L~~~~~~ID~~~~~L~l~~~~ 136 (148)
T 3s8i_A 108 DMLLGLDMLRRHQCSIDLKKNVLVIGTTG 136 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEECTTTC
T ss_pred CeeccHHHHHhCCEEEEcCCCEEEEccCC
Confidence 47999999999999999999999997643
No 40
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=87.35 E-value=0.63 Score=34.75 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=23.0
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeeeec
Q 039965 61 TVSLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 61 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
++.|.|| +|.+++++|||.+++-+.
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~ 34 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIE 34 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEES
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEe
Confidence 4789999 999999999999999986
No 41
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=87.27 E-value=0.57 Score=35.42 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=23.0
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeeeec
Q 039965 61 TVSLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 61 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
++.|.|| +|.+++++|||.+++-+.
T Consensus 10 ~v~v~I~--Gq~~e~LLDTGAD~TVl~ 34 (104)
T 1fmb_A 10 TTIVLIN--DTPLNVLLDTGADTSVLT 34 (104)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEc
Confidence 5789999 999999999999999885
No 42
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=86.72 E-value=0.5 Score=38.21 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=26.1
Q ss_pred cceeEEEEEEeCCCCceEEEEEeCCCCeeeec
Q 039965 56 HNVSLTVSLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 56 ~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
....+++++.|+ +++++++||||++.+.+.
T Consensus 23 ~~~~~~v~v~In--G~~~~~LvDTGAs~s~is 52 (148)
T 2i1a_A 23 QVPMLYINIEIN--NYPVKAFVDTGAQTTIMS 52 (148)
T ss_dssp CCCCCEEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred ccceEEEEEEEC--CEEEEEEEECCCCccccC
Confidence 455689999999 899999999999988874
No 43
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=83.83 E-value=1.1 Score=33.42 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.9
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeeeec
Q 039965 61 TVSLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 61 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
++.|.|| +|.+++++|||.+++-+.
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~ 34 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVA 34 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEES
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEc
Confidence 4779999 999999999999999985
No 44
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=79.61 E-value=1.4 Score=35.59 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=25.6
Q ss_pred cceeEEEEEEeCCCCceEEEEEeCCCCeeeec
Q 039965 56 HNVSLTVSLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 56 ~~~~y~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
.-..|++++.|+ +++++++||||++.+.+.
T Consensus 21 ~~~~l~v~~~In--g~~v~~LVDTGAs~s~Is 50 (148)
T 3s8i_A 21 QVTMLYINCKVN--GHPLKAFVDSGAQMTIMS 50 (148)
T ss_dssp -CCCCEEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred ccCEEEEEEEEC--CEEEEEEEeCCCCcEeeC
Confidence 344589999999 999999999999998874
No 45
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=79.48 E-value=1.7 Score=33.49 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.7
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeeeec
Q 039965 61 TVSLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 61 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
++ |.|| +|.+++++|||.+++-+.
T Consensus 16 ~v-ikI~--Gq~~eaLLDTGAD~TVi~ 39 (116)
T 2hah_A 16 IL-IFVN--GYPIKFLLDTGADITVLN 39 (116)
T ss_dssp EE-EEET--TEEEEEEECTTCSSCEEE
T ss_pred EE-EEEC--CEEEEEEecCCCCcEEEc
Confidence 35 9999 999999999999999885
No 46
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=77.08 E-value=2.1 Score=32.54 Aligned_cols=27 Identities=22% Similarity=0.553 Sum_probs=22.7
Q ss_pred EEEEEeC---CCCceEEEEEeCCCCeeeec
Q 039965 61 TVSLKLG---SPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 61 ~~~i~iG---tP~Q~~~v~~DTGSs~~wv~ 87 (419)
.+.|.|| +|+|.+..++|||-+++-+.
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~ 41 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIP 41 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEE
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEe
Confidence 3566666 78999999999999999975
No 47
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=74.32 E-value=3.2 Score=31.70 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.8
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeeeec
Q 039965 61 TVSLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 61 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
.+.|.|| +|.+..++|||-+++-+.
T Consensus 11 ~vti~I~--Gq~~eaLLDTGADdTVi~ 35 (114)
T 3sqf_A 11 SLTLWLD--DKMFTGLINTGADVTIIK 35 (114)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred eEEEEEC--CEEEEEEEccCCCceEEe
Confidence 4779999 999999999999999985
No 48
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=68.74 E-value=4.9 Score=31.64 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=23.5
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeeeec
Q 039965 60 LTVSLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 60 y~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
-++.+.|+ +|.+.+++|||.+++-+.
T Consensus 23 P~v~i~I~--G~~~~~LlDTGAd~tVl~ 48 (132)
T 3slz_A 23 PRITLKVG--GQPVTFLVDTGAQHSVLT 48 (132)
T ss_dssp SEEEEEET--TEEEEEEECTTCSSCEEC
T ss_pred CEEEEEEC--CEEEEEEEeCCCCeEEEc
Confidence 45789999 999999999999999986
No 49
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=61.20 E-value=7.4 Score=33.02 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=23.2
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeeeec
Q 039965 61 TVSLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 61 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
.+.|.|| +|.+.+++|||.+++-+.
T Consensus 10 ~vtv~I~--Gq~~e~LLDTGAD~TVl~ 34 (203)
T 3ka2_A 10 LVTIRIG--GQLKEALLDTGADDTVIE 34 (203)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEe
Confidence 5789999 999999999999999986
No 50
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=58.66 E-value=7.9 Score=30.04 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=18.2
Q ss_pred eCCCCceEEEEEeCCCCeeeec
Q 039965 66 LGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 66 iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
|| +|.++.++|||-+++-+.
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~ 46 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIIS 46 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEE
T ss_pred CC--CEEEEEEecCCCCcEEEe
Confidence 77 888999999999999986
No 51
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=46.35 E-value=17 Score=26.62 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=14.2
Q ss_pred cEEEecccccccccHH
Q 039965 269 QTMVDSGTQFTFLLGE 284 (419)
Q Consensus 269 ~~iiDSGts~~~lp~~ 284 (419)
.++||||++.+++|..
T Consensus 29 ~v~~DTGSs~lWv~~~ 44 (97)
T 1lya_A 29 TVVFDTGSSNLWVPSI 44 (97)
T ss_dssp EEEEETTCCCEEEEBT
T ss_pred EEEEeCCCCceEEeEc
Confidence 4899999999999865
No 52
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=37.93 E-value=29 Score=29.34 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.8
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeeeec
Q 039965 61 TVSLKLGSPPQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 61 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 87 (419)
.+.+.|| +|.+..++|||.+++-+.
T Consensus 114 ~~~iki~--Gq~~e~LlDTGAD~TVl~ 138 (203)
T 3ka2_A 114 LVTIRIG--GQLKEALLDTGADDTVIE 138 (203)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEC
T ss_pred cEEEEEC--CEEEeeeecccCCceeee
Confidence 5789999 899999999999999985
No 53
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=28.75 E-value=86 Score=26.89 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=22.1
Q ss_pred eeEEEE---EEeCCC-----CceEEEEEeCCCCeeeec
Q 039965 58 VSLTVS---LKLGSP-----PQDVTMVLDTGSELSWLH 87 (419)
Q Consensus 58 ~~y~~~---i~iGtP-----~Q~~~v~~DTGSs~~wv~ 87 (419)
.+|.++ |.||.. .....++||||++.++++
T Consensus 188 ~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP 225 (239)
T 1b5f_A 188 YYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGP 225 (239)
T ss_dssp TTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEEC
T ss_pred CeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCC
Confidence 456554 678752 345789999999999986
No 54
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=26.55 E-value=56 Score=30.05 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=28.9
Q ss_pred CCcccccccccCCCCCCCCCeeEEEEeeeEEEC--CEEeeCCCcccccCCCCCCcEEEecccccccccHH
Q 039965 217 KPLSYTPLVRISKPLPYFDRVAYSVQLEGIKVG--SKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGE 284 (419)
Q Consensus 217 g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~v~--~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~ 284 (419)
|.....|+.... ...|.+ .|.|| .+.+ .++||||++.+++|..
T Consensus 5 g~~~~~~l~~~~-------~~~Y~~---~i~iGtP~q~~---------------~v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 5 GSVDTPGLYDFD-------LEEYAI---PVSIGTPGQDF---------------YLLFDTGSSDTWVPHK 49 (361)
T ss_dssp CCEEEEEEEETT-------TTEEEE---EEEETTTTEEE---------------EEEEETTCCCCEEEBT
T ss_pred CccceEEeecCC-------CCEEEE---EEEECCCCcEE---------------EEEEcCCCCCeEECCC
Confidence 445556666532 235655 47788 4544 4899999999999865
No 55
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=25.75 E-value=62 Score=29.25 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=14.3
Q ss_pred cEEEecccccccccHH
Q 039965 269 QTMVDSGTQFTFLLGE 284 (419)
Q Consensus 269 ~~iiDSGts~~~lp~~ 284 (419)
.+++|||++.+++|..
T Consensus 30 ~v~~DTGSs~~Wv~~~ 45 (323)
T 3cms_A 30 TVLFDTGSSDFWVPSI 45 (323)
T ss_dssp EEEEETTCCCEEEEBT
T ss_pred EEEEeCCccceEEcCC
Confidence 4899999999999865
No 56
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=24.78 E-value=58 Score=25.41 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=20.4
Q ss_pred eEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHH
Q 039965 245 GIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGE 284 (419)
Q Consensus 245 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~ 284 (419)
.++|+|+.+ .+++|||...+.|...
T Consensus 26 ~i~I~G~~~---------------~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 26 TLKVGGQPV---------------TFLVDTGAQHSVLTQN 50 (132)
T ss_dssp EEEETTEEE---------------EEEECTTCSSCEECSC
T ss_pred EEEECCEEE---------------EEEEeCCCCeEEEccc
Confidence 488899876 3899999999988754
No 57
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=23.07 E-value=50 Score=25.13 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=24.2
Q ss_pred eEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEecccccccccH
Q 039965 238 AYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLG 283 (419)
Q Consensus 238 ~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~ 283 (419)
.|+=.+- ++|+|+.+ .+++|||+-.+.+..
T Consensus 11 l~~rP~v-ikI~Gq~~---------------eaLLDTGAD~TVi~~ 40 (116)
T 2hah_A 11 EKRPEIL-IFVNGYPI---------------KFLLDTGADITVLNR 40 (116)
T ss_dssp SSCCEEE-EEETTEEE---------------EEEECTTCSSCEEEG
T ss_pred ccCCCEE-EEECCEEE---------------EEEecCCCCcEEEcc
Confidence 4666667 99999976 389999999888874
No 58
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=21.60 E-value=90 Score=28.23 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=14.8
Q ss_pred cEEEecccccccccHHH
Q 039965 269 QTMVDSGTQFTFLLGEV 285 (419)
Q Consensus 269 ~~iiDSGts~~~lp~~~ 285 (419)
.++||||++.+++|...
T Consensus 31 ~v~~DTGSs~lWv~~~~ 47 (329)
T 3c9x_A 31 PLDFDTGSSDLWVFSSE 47 (329)
T ss_dssp EEEEETTCCCEEECBTT
T ss_pred EEEEcCCCCCeEEecCC
Confidence 48999999999999753
No 59
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=21.43 E-value=66 Score=29.09 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=22.8
Q ss_pred eEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHH
Q 039965 238 AYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEV 285 (419)
Q Consensus 238 ~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~ 285 (419)
.|.+ .|.||.+.+ .++||||++.+++|...
T Consensus 16 ~Y~~---~i~iG~Q~~---------------~v~~DTGSs~lWv~~~~ 45 (323)
T 1bxo_A 16 EYIT---PVTIGGTTL---------------NLNFDTGSADLWVFSTE 45 (323)
T ss_dssp CEEE---EEEETTEEE---------------EEEEETTCCCEEECBTT
T ss_pred EEEE---EEEECCEEE---------------EEEEeCCCcceEEecCC
Confidence 4655 477885554 48999999999999754
No 60
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=20.49 E-value=89 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=22.1
Q ss_pred eeEEE---EEEeCCC----CceEEEEEeCCCCeeeecC
Q 039965 58 VSLTV---SLKLGSP----PQDVTMVLDTGSELSWLHC 88 (419)
Q Consensus 58 ~~y~~---~i~iGtP----~Q~~~v~~DTGSs~~wv~c 88 (419)
.+|.+ .|.||.- .....+++|||++.++++-
T Consensus 99 ~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~ 136 (241)
T 1lya_B 99 AYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPV 136 (241)
T ss_dssp TTBEEEEEEEEETTSCEESTTCEEEEECTTCSSEEECH
T ss_pred cEEEEEEeEEEECCeeEeccCCCEEEEECCCccccCCH
Confidence 34544 4678752 3457899999999999864
No 61
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=20.34 E-value=72 Score=28.85 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=22.8
Q ss_pred eEEEEeeeEEECCEEeeCCCcccccCCCCCCcEEEecccccccccHHH
Q 039965 238 AYSVQLEGIKVGSKVLNLPKSVFIPDHTGAGQTMVDSGTQFTFLLGEV 285 (419)
Q Consensus 238 ~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~~ 285 (419)
.|.+ .|.||.+.+ .++||||++.+++|...
T Consensus 16 ~Y~~---~i~iG~q~~---------------~v~~DTGSs~lWv~~~~ 45 (323)
T 1izd_A 16 EYIT---QVTVGDDTL---------------GLDFDTGSADLWVFSSQ 45 (323)
T ss_dssp CEEE---EEEETTEEE---------------EEEEETTCCCEEECBTT
T ss_pred EEEE---EEEECCEEE---------------EEEEcCCCcceEEecCC
Confidence 4655 477885554 48999999999999764
Done!