BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039967
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 163/495 (32%), Positives = 234/495 (47%), Gaps = 72/495 (14%)
Query: 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRIL 60
A S+ L LN+S N G IPP L +LQYL L N+ +G IP + G + L L
Sbjct: 239 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 61 YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPL-VLGNLNSL 119
N +G++P G SL+ LAL N F +P+ L + L
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNF--------------SGELPMDTLLKMRGL 342
Query: 120 STMDLSQNQFSGSIPLSLGNLS---------------------------NLDKLYLYSNS 152
+DLS N+FSG +P SL NLS L +LYL +N
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 153 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNL 212
F+G IP + N L+ L LS N L G+IP S G+LS L + L+ N L G +P L +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 213 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH 272
K+L L L N L+G IPS + N ++L + L NN L +P+ I L +L+ L+L N
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS-FK-------NLTSVERVLLNQNN---- 320
SG IP +G+ L+ L++ N +G IP + FK N + +R + +N+
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 582
Query: 321 -LSGKVNVPKL-GTFIISVNNISESIP-------------PEIGDSPKLQVLDLSSNNIV 365
G N+ + G +N +S P P ++ + LD+S N +
Sbjct: 583 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 642
Query: 366 GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR 425
G IP ++G + L L L N +SG +P E+G L L LDLS+NKL IP+++ L
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 426 LCYLDLSNNQFGHKI 440
L +DLSNN I
Sbjct: 703 LTEIDLSNNNLSGPI 717
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 154/495 (31%), Positives = 220/495 (44%), Gaps = 110/495 (22%)
Query: 25 PQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVL 84
P +G+ S LQ+LD+ N+LSG I +L++L NQ G IP L + L
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 271
Query: 85 ALCHNYFVCXXXXXXXXXXXXXXXIPLVL-GNLNSLSTMDLSQNQFSGSIPLSLGNLSNL 143
+L N F IP L G ++L+ +DLS N F G++P G+ S L
Sbjct: 272 SLAENKFT--------------GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 317
Query: 144 DKLYLYSNSFSGSIP-SIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSL----------- 191
+ L L SN+FSG +P + ++ L LDLS N+ G +P S NLS+
Sbjct: 318 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 377
Query: 192 --------------TLMSLF--NNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 235
TL L+ NN +G +PP L N L +L L N LSG IPSS+G+
Sbjct: 378 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 437
Query: 236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN 295
LS LR L L+ N L +P+E+ Y+ +L L L N L+G IP + N T L +++ N
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 296 HLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQ 355
L+G IPK L ++ + L+ N+ SG +IP E+GD L
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSG-------------------NIPAELGDCRSLI 538
Query: 356 VLDLSSNNIVGEIPV----QLGKL---FSLNKLIL------------------------- 383
LDL++N G IP Q GK+ F K +
Sbjct: 539 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 598
Query: 384 -NLNQLSGGMPLELGSLI-------------ELQYLDLSTNKLKSSIPKSIGNLLRLCYL 429
LN+LS P + S + + +LD+S N L IPK IG++ L L
Sbjct: 599 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 658
Query: 430 DLSNNQFGHKILVEL 444
+L +N I E+
Sbjct: 659 NLGHNDISGSIPDEV 673
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 203/418 (48%), Gaps = 43/418 (10%)
Query: 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQL 67
L HL +S N + G + + NL++LD+ SN S IP +G + L+ L N+L
Sbjct: 176 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 68 HGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQN 127
G I + + +L + N FV P+ L SL + L++N
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVG----------------PIPPLPLKSLQYLSLAEN 276
Query: 128 QFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL-SF 185
+F+G IP L G L L L N F G++P G+ L L LS N G +P+ +
Sbjct: 277 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 336
Query: 186 GNLSSLTLMSLFNNSLSGSLPPILGNL-KSLSALGLHINQLSG-VIPSSIGN-LSSLRAL 242
+ L ++ L N SG LP L NL SL L L N SG ++P+ N ++L+ L
Sbjct: 337 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 396
Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
YL NNG +P + + L L L N+LSG IP S+G+L+ L L + N L G IP
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362
+ + ++E ++L+ N+L+G+ IP + + L + LS+N
Sbjct: 457 QELMYVKTLETLILDFNDLTGE-------------------IPSGLSNCTNLNWISLSNN 497
Query: 363 NIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSI 420
+ GEIP +G+L +L L L+ N SG +P ELG L +LDL+TN +IP ++
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 131/413 (31%), Positives = 193/413 (46%), Gaps = 59/413 (14%)
Query: 12 LNLSFNILFGIIPPQIGNLS-NLQYLDLGSNQLSG-VIP-LEIGHLNQLRILYFDVNQLH 68
L+LSFN G +P + NLS +L LDL SN SG ++P L N L+ LY N
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 69 GSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQ 128
G IP + S + L L NY IP LG+L+ L + L N
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYL--------------SGTIPSSLGSLSKLRDLKLWLNM 450
Query: 129 FSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNL 188
G IP L + L+ L L N +G IPS + N +L + LS N+L G IP G L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 189 SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI----GNLSS-----L 239
+L ++ L NNS SG++P LG+ +SL L L+ N +G IP+++ G +++
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 240 RALYLYNNGLYS-------------FVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTG 286
R +Y+ N+G+ E++ L++ + + + G + N
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 630
Query: 287 LLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPP 346
++ L+M N LSG IPK ++ P L + N+IS SIP
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSM-------------------PYLFILNLGHNDISGSIPD 671
Query: 347 EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 399
E+GD L +LDLSSN + G IP + L L ++ L+ N LSG +P E+G
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQF 723
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 172/336 (51%), Gaps = 13/336 (3%)
Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
L +D+S N FS IP LG+ S L L + N SG I L L++S NQ +
Sbjct: 199 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPIL-GNLKSLSALGLHINQLSGVIPSSIGNLS 237
G IP L SL +SL N +G +P L G +L+ L L N G +P G+ S
Sbjct: 258 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 238 SLRALYLYNNGLYSFVP-EEIRYLTSLSELELCTNHLSGVIPHSIGNLTG-LLLLNMCEN 295
L +L L +N +P + + + L L+L N SG +P S+ NL+ LL L++ N
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 296 HLSGPI-PKSFKN-LTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEI 348
+ SGPI P +N +++ + L N +GK+ N +L + +S N +S +IP +
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLS 408
G KL+ L L N + GEIP +L + +L LIL+ N L+G +P L + L ++ LS
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 409 TNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
N+L IPK IG L L L LSNN F I EL
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 162/361 (44%), Gaps = 60/361 (16%)
Query: 9 LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH 68
L L L N G IPP + N S L L L N LSG IP +G L++LR L +N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 69 GSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQ 128
G IP E+ + + L L N IP L N +L+ + LS N+
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLT--------------GEIPSGLSNCTNLNWISLSNNR 498
Query: 129 FSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSF--- 185
+G IP +G L NL L L +NSFSG+IP+ +G+ +SL+ LDL+ N G+IP +
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558
Query: 186 -----------------------------GNL--------------SSLTLMSLFNNSLS 202
GNL S+ ++ +
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 203 GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTS 262
G P N S+ L + N LSG IP IG++ L L L +N + +P+E+ L
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 263 LSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322
L+ L+L +N L G IP ++ LT L +++ N+LSGPIP+ + T LN L
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 738
Query: 323 G 323
G
Sbjct: 739 G 739
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 170/354 (48%), Gaps = 41/354 (11%)
Query: 117 NSLSTMDLSQNQFSGSIPLSLG---------NLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
+ ++++DLS S PL++G +L+ L+ L+L ++ +GS+ + SL
Sbjct: 47 DKVTSIDLS------SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCS-ASL 99
Query: 168 LQLDLSENQLIGSIP--LSFGNLSSLTLMSLFNNSLSGSLP-PILGNLK--SLSALGLHI 222
LDLS N L G + S G+ S L +++ +N+L P + G LK SL L L
Sbjct: 100 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSA 157
Query: 223 NQLSG------VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV 276
N +SG V+ G L+ L + N + V ++ +L L++ +N+ S
Sbjct: 158 NSISGANVVGWVLSDGCG---ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 212
Query: 277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV---NVPKLGTF 333
IP +G+ + L L++ N LSG ++ T ++ + ++ N G + + L
Sbjct: 213 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 271
Query: 334 IISVNNISESIPPEI-GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGM 392
++ N + IP + G L LDLS N+ G +P G L L L+ N SG +
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 393 PLE-LGSLIELQYLDLSTNKLKSSIPKSIGNL-LRLCYLDLSNNQFGHKILVEL 444
P++ L + L+ LDLS N+ +P+S+ NL L LDLS+N F IL L
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 163/495 (32%), Positives = 234/495 (47%), Gaps = 72/495 (14%)
Query: 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRIL 60
A S+ L LN+S N G IPP L +LQYL L N+ +G IP + G + L L
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 61 YFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPL-VLGNLNSL 119
N +G++P G SL+ LAL N F +P+ L + L
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNF--------------SGELPMDTLLKMRGL 345
Query: 120 STMDLSQNQFSGSIPLSLGNLS---------------------------NLDKLYLYSNS 152
+DLS N+FSG +P SL NLS L +LYL +N
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 153 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNL 212
F+G IP + N L+ L LS N L G+IP S G+LS L + L+ N L G +P L +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 213 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH 272
K+L L L N L+G IPS + N ++L + L NN L +P+ I L +L+ L+L N
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 273 LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKS-FK-------NLTSVERVLLNQNN---- 320
SG IP +G+ L+ L++ N +G IP + FK N + +R + +N+
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585
Query: 321 -LSGKVNVPKL-GTFIISVNNISESIP-------------PEIGDSPKLQVLDLSSNNIV 365
G N+ + G +N +S P P ++ + LD+S N +
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645
Query: 366 GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR 425
G IP ++G + L L L N +SG +P E+G L L LDLS+NKL IP+++ L
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 426 LCYLDLSNNQFGHKI 440
L +DLSNN I
Sbjct: 706 LTEIDLSNNNLSGPI 720
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 154/495 (31%), Positives = 220/495 (44%), Gaps = 110/495 (22%)
Query: 25 PQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVL 84
P +G+ S LQ+LD+ N+LSG I +L++L NQ G IP L + L
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274
Query: 85 ALCHNYFVCXXXXXXXXXXXXXXXIPLVL-GNLNSLSTMDLSQNQFSGSIPLSLGNLSNL 143
+L N F IP L G ++L+ +DLS N F G++P G+ S L
Sbjct: 275 SLAENKFT--------------GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320
Query: 144 DKLYLYSNSFSGSIP-SIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSL----------- 191
+ L L SN+FSG +P + ++ L LDLS N+ G +P S NLS+
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 192 --------------TLMSLF--NNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 235
TL L+ NN +G +PP L N L +L L N LSG IPSS+G+
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN 295
LS LR L L+ N L +P+E+ Y+ +L L L N L+G IP + N T L +++ N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 296 HLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQ 355
L+G IPK L ++ + L+ N+ SG +IP E+GD L
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSG-------------------NIPAELGDCRSLI 541
Query: 356 VLDLSSNNIVGEIPV----QLGKL---FSLNKLIL------------------------- 383
LDL++N G IP Q GK+ F K +
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 384 -NLNQLSGGMPLELGSLI-------------ELQYLDLSTNKLKSSIPKSIGNLLRLCYL 429
LN+LS P + S + + +LD+S N L IPK IG++ L L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
Query: 430 DLSNNQFGHKILVEL 444
+L +N I E+
Sbjct: 662 NLGHNDISGSIPDEV 676
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 203/418 (48%), Gaps = 43/418 (10%)
Query: 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQL 67
L HL +S N + G + + NL++LD+ SN S IP +G + L+ L N+L
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 68 HGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQN 127
G I + + +L + N FV P+ L SL + L++N
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVG----------------PIPPLPLKSLQYLSLAEN 279
Query: 128 QFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL-SF 185
+F+G IP L G L L L N F G++P G+ L L LS N G +P+ +
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339
Query: 186 GNLSSLTLMSLFNNSLSGSLPPILGNL-KSLSALGLHINQLSG-VIPSSIGN-LSSLRAL 242
+ L ++ L N SG LP L NL SL L L N SG ++P+ N ++L+ L
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
YL NNG +P + + L L L N+LSG IP S+G+L+ L L + N L G IP
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362
+ + ++E ++L+ N+L+G+ IP + + L + LS+N
Sbjct: 460 QELMYVKTLETLILDFNDLTGE-------------------IPSGLSNCTNLNWISLSNN 500
Query: 363 NIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSI 420
+ GEIP +G+L +L L L+ N SG +P ELG L +LDL+TN +IP ++
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 131/413 (31%), Positives = 193/413 (46%), Gaps = 59/413 (14%)
Query: 12 LNLSFNILFGIIPPQIGNLS-NLQYLDLGSNQLSG-VIP-LEIGHLNQLRILYFDVNQLH 68
L+LSFN G +P + NLS +L LDL SN SG ++P L N L+ LY N
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 69 GSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQ 128
G IP + S + L L NY IP LG+L+ L + L N
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYL--------------SGTIPSSLGSLSKLRDLKLWLNM 453
Query: 129 FSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNL 188
G IP L + L+ L L N +G IPS + N +L + LS N+L G IP G L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 189 SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI----GNLSS-----L 239
+L ++ L NNS SG++P LG+ +SL L L+ N +G IP+++ G +++
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 240 RALYLYNNGLYS-------------FVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTG 286
R +Y+ N+G+ E++ L++ + + + G + N
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 287 LLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPP 346
++ L+M N LSG IPK ++ P L + N+IS SIP
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSM-------------------PYLFILNLGHNDISGSIPD 674
Query: 347 EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 399
E+GD L +LDLSSN + G IP + L L ++ L+ N LSG +P E+G
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQF 726
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 172/336 (51%), Gaps = 13/336 (3%)
Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
L +D+S N FS IP LG+ S L L + N SG I L L++S NQ +
Sbjct: 202 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPIL-GNLKSLSALGLHINQLSGVIPSSIGNLS 237
G IP L SL +SL N +G +P L G +L+ L L N G +P G+ S
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 238 SLRALYLYNNGLYSFVP-EEIRYLTSLSELELCTNHLSGVIPHSIGNLTG-LLLLNMCEN 295
L +L L +N +P + + + L L+L N SG +P S+ NL+ LL L++ N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 296 HLSGPI-PKSFKN-LTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEI 348
+ SGPI P +N +++ + L N +GK+ N +L + +S N +S +IP +
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLS 408
G KL+ L L N + GEIP +L + +L LIL+ N L+G +P L + L ++ LS
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 409 TNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVEL 444
N+L IPK IG L L L LSNN F I EL
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 162/361 (44%), Gaps = 60/361 (16%)
Query: 9 LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH 68
L L L N G IPP + N S L L L N LSG IP +G L++LR L +N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 69 GSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQ 128
G IP E+ + + L L N IP L N +L+ + LS N+
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLT--------------GEIPSGLSNCTNLNWISLSNNR 501
Query: 129 FSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSF--- 185
+G IP +G L NL L L +NSFSG+IP+ +G+ +SL+ LDL+ N G+IP +
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 186 -----------------------------GNL--------------SSLTLMSLFNNSLS 202
GNL S+ ++ +
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 203 GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTS 262
G P N S+ L + N LSG IP IG++ L L L +N + +P+E+ L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 263 LSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322
L+ L+L +N L G IP ++ LT L +++ N+LSGPIP+ + T LN L
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741
Query: 323 G 323
G
Sbjct: 742 G 742
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 170/354 (48%), Gaps = 41/354 (11%)
Query: 117 NSLSTMDLSQNQFSGSIPLSLG---------NLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
+ ++++DLS S PL++G +L+ L+ L+L ++ +GS+ + SL
Sbjct: 50 DKVTSIDLS------SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCS-ASL 102
Query: 168 LQLDLSENQLIGSIP--LSFGNLSSLTLMSLFNNSLSGSLP-PILGNLK--SLSALGLHI 222
LDLS N L G + S G+ S L +++ +N+L P + G LK SL L L
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSA 160
Query: 223 NQLSG------VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV 276
N +SG V+ G L+ L + N + V ++ +L L++ +N+ S
Sbjct: 161 NSISGANVVGWVLSDGCG---ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 215
Query: 277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV---NVPKLGTF 333
IP +G+ + L L++ N LSG ++ T ++ + ++ N G + + L
Sbjct: 216 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274
Query: 334 IISVNNISESIPPEI-GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGM 392
++ N + IP + G L LDLS N+ G +P G L L L+ N SG +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 393 PLE-LGSLIELQYLDLSTNKLKSSIPKSIGNL-LRLCYLDLSNNQFGHKILVEL 444
P++ L + L+ LDLS N+ +P+S+ NL L LDLS+N F IL L
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 128/291 (43%), Gaps = 54/291 (18%)
Query: 109 IPLVLGNLNSLSTMDLSQ-NQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
IP L NL L+ + + N G IP ++ L+ L LY+ + SG+IP + +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 168 LQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSG 227
+ LD S N+LSG+LPP + +L +L + N++SG
Sbjct: 128 VTLDFSY------------------------NALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 228 VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGL 287
IP S G+ S L + + + N L+G IP + NL L
Sbjct: 164 AIPDSYGSFSKL-----------------------FTSMTISRNRLTGKIPPTFANLN-L 199
Query: 288 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS---GKVNVPK-LGTFIISVNNISES 343
+++ N L G F + + +++ L +N+L+ GKV + K L + N I +
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259
Query: 344 IPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL 394
+P + L L++S NN+ GEIP Q G L + N+ G PL
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 117/252 (46%), Gaps = 28/252 (11%)
Query: 4 SSFPHLVHLNLSF----NILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRI 59
SS +L +LN + N L G IPP I L+ L YL + +SG IP + + L
Sbjct: 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129
Query: 60 LYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSL 119
L F N L G++P I SL N++ + + IP G+ + L
Sbjct: 130 LDFSYNALSGTLPPSIS--SLPNLVGITFD------------GNRISGAIPDSYGSFSKL 175
Query: 120 -STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL- 177
++M +S+N+ +G IP + NL NL + L N G + G+ K+ ++ L++N L
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 178 --IGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 235
+G + LS +L + L NN + G+LP L LK L +L + N L G IP GN
Sbjct: 235 FDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289
Query: 236 LSSLRALYLYNN 247
L NN
Sbjct: 290 LQRFDVSAYANN 301
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 10/238 (4%)
Query: 205 LPPILGNLKSLSALGLH-INQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSL 263
+P L NL L+ L + IN L G IP +I L+ L LY+ + + +P+ + + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 264 SELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSV-ERVLLNQNNLS 322
L+ N LSG +P SI +L L+ + N +SG IP S+ + + + + +++N L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 323 GKVNVPKLG----TFI-ISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFS 377
GK+ P F+ +S N + G Q + L+ N++ ++ ++G +
Sbjct: 188 GKI-PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 378 LNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435
LN L L N++ G +P L L L L++S N L IP+ GNL R +NN+
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 309 TSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSS-NNIVGE 367
T + +N +LSG +N+PK IP + + P L L + NN+VG
Sbjct: 45 TDTQTYRVNNLDLSG-LNLPK-----------PYPIPSSLANLPYLNFLYIGGINNLVGP 92
Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427
IP + KL L+ L + +SG +P L + L LD S N L ++P SI +L L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 428 YLDLSNNQFGHKI 440
+ N+ I
Sbjct: 153 GITFDGNRISGAI 165
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/390 (29%), Positives = 176/390 (45%), Gaps = 52/390 (13%)
Query: 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRI---LYFD 63
LV + ++ N + I P + NL+NL L L +NQ++ + PL+ + +LN+L + D
Sbjct: 90 KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 147
Query: 64 VNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMD 123
++ L G L+ QLS N + I VL L +L ++
Sbjct: 148 ISALSGLTSLQ--QLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLI 204
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLKSLLQLDLSENQLIGSI 181
+ NQ S P LG L+NLD+L L N G++ S L +L LDL+ NQ+
Sbjct: 205 ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLA 258
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
PLS L+ LT + L N +S P L L +L+ L L+ NQL + P I NL +L
Sbjct: 259 PLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 312
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
L LY N + P + LT L L N +S V S+ NLT + L+ N +S
Sbjct: 313 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLT 368
Query: 302 PKSFKNLTSVERVLLNQN-------NLSGKVNVPKLGTFIISVNNISESI--PPEIGDSP 352
P NLT + ++ LN N V++P +V N++ ++ P I D
Sbjct: 369 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN------TVKNVTGALIAPATISDGG 420
Query: 353 KLQVLDLSSN--NIVGEI------PVQLGK 374
D++ N + E+ PV +GK
Sbjct: 421 SYTEPDITWNLPSYTNEVSYTFSQPVTIGK 450
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 188/405 (46%), Gaps = 75/405 (18%)
Query: 30 LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
L+NL ++ +NQL+ + PL+ +L +L + + NQ+ P
Sbjct: 66 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 106
Query: 90 YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
L NL +L+ + L NQ + PL NL+NL++L L
Sbjct: 107 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 141
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
SN+ S I ++ G L SL QL NQ+ PL+ NL++L + + +N +S S+
Sbjct: 142 SNTIS-DISALSG-LTSLQQLSFG-NQVTDLKPLA--NLTTLERLDISSNKVSDISVLAK 196
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
L NL+SL A NQ+S + P +G L++L L L N L + LT+L++L+L
Sbjct: 197 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 249
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
N +S + P + LT L L + N +S P LT++ + LN+N ++S
Sbjct: 250 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 305
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
N+ L + NNIS+ P + KLQ L +NN V ++ L L ++N L
Sbjct: 306 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFANNKVSDVS-SLANLTNINWLSAGH 361
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
NQ+S PL L + +L D + TN K SIP ++ N+
Sbjct: 362 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 406
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 21/232 (9%)
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
L + +L A L I + GV L++L + NN L P ++ LT L ++ +
Sbjct: 44 LDQVTTLQADRLGIKSIDGV-----EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 96
Query: 269 CTNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNV 327
N ++ + P ++ NLTGL L N N ++ P KNLT++ R+ L+ N +S +
Sbjct: 97 NNNQIADITPLANLTNLTGLTLFN---NQITDIDP--LKNLTNLNRLELSSNTISDISAL 151
Query: 328 PKLGTFI-ISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLN 386
L + +S N + P + + L+ LD+SSN V +I V L KL +L LI N
Sbjct: 152 SGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNN 208
Query: 387 QLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH 438
Q+S PL G L L L L+ N+LK ++ +L L LDL+NNQ +
Sbjct: 209 QISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 256
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 116/390 (29%), Positives = 176/390 (45%), Gaps = 52/390 (13%)
Query: 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRI---LYFD 63
LV + ++ N + I P + NL+NL L L +NQ++ + PL+ + +LN+L + D
Sbjct: 91 KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 148
Query: 64 VNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMD 123
++ L G L+ QLS N + I VL L +L ++
Sbjct: 149 ISALSGLTSLQ--QLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLI 205
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLKSLLQLDLSENQLIGSI 181
+ NQ S P LG L+NLD+L L N G++ S L +L LDL+ NQ+
Sbjct: 206 ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLA 259
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
PLS L+ LT + L N +S P L L +L+ L L+ NQL + P I NL +L
Sbjct: 260 PLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
L LY N + P + LT L L N +S V S+ NLT + L+ N +S
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT 369
Query: 302 PKSFKNLTSVERVLLNQN-------NLSGKVNVPKLGTFIISVNNISESI--PPEIGDSP 352
P NLT + ++ LN N V++P +V N++ ++ P I D
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN------TVKNVTGALIAPATISDGG 421
Query: 353 KLQVLDLSSN--NIVGEI------PVQLGK 374
D++ N + E+ PV +GK
Sbjct: 422 SYTEPDITWNLPSYTNEVSYTFSQPVTIGK 451
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 187/405 (46%), Gaps = 75/405 (18%)
Query: 30 LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
L+NL ++ +NQL+ + PL+ +L +L + + NQ+ P
Sbjct: 67 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 107
Query: 90 YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
L NL +L+ + L NQ + PL NL+NL++L L
Sbjct: 108 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 142
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
SN+ S I ++ G L SL QL NQ+ PL+ NL++L + + +N +S S+
Sbjct: 143 SNTIS-DISALSG-LTSLQQLSFG-NQVTDLKPLA--NLTTLERLDISSNKVSDISVLAK 197
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
L NL+SL A NQ+S + P +G L++L L L N L + LT+L++L+L
Sbjct: 198 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
N +S + P + LT L L + N +S P LT++ + LN+N ++S
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 306
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
N+ L + NNIS+ P + KLQ L NN V ++ L L ++N L
Sbjct: 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLANLTNINWLSAGH 362
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
NQ+S PL L + +L D + TN K SIP ++ N+
Sbjct: 363 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 21/232 (9%)
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
L + +L A L I + GV L++L + NN L P ++ LT L ++ +
Sbjct: 45 LDQVTTLQADRLGIKSIDGV-----EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 97
Query: 269 CTNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNV 327
N ++ + P ++ NLTGL L N N ++ P KNLT++ R+ L+ N +S +
Sbjct: 98 NNNQIADITPLANLTNLTGLTLFN---NQITDIDP--LKNLTNLNRLELSSNTISDISAL 152
Query: 328 PKLGTFI-ISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLN 386
L + +S N + P + + L+ LD+SSN V +I V L KL +L LI N
Sbjct: 153 SGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNN 209
Query: 387 QLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH 438
Q+S PL G L L L L+ N+LK ++ +L L LDL+NNQ +
Sbjct: 210 QISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 257
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 188/405 (46%), Gaps = 74/405 (18%)
Query: 30 LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
L+NL ++ +NQL+ + PL+ +L +L + + NQ+ P
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 102
Query: 90 YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
L NL +L+ + L NQ + PL NL+NL++L L
Sbjct: 103 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
SN+ S I ++ G L SL QL S NQ+ PL NL++L + + +N +S S+
Sbjct: 138 SNTISD-ISALSG-LTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAK 193
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
L NL+SL A NQ+S + P +G L++L L L N L + LT+L++L+L
Sbjct: 194 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 246
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
N +S + P + LT L L + N +S P LT++ + LN+N ++S
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 302
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
N+ L + NNIS+ P + KLQ L SNN V ++ L L ++N L
Sbjct: 303 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFSNNKVSDVS-SLANLTNINWLSAGH 358
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
NQ+S PL L + +L D + TN K SIP ++ N+
Sbjct: 359 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 403
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 176/406 (43%), Gaps = 83/406 (20%)
Query: 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRI------- 59
LV + ++ N + I P + NL+NL L L +NQ++ + PL+ + +LN+L +
Sbjct: 86 KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 143
Query: 60 ------------LYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXX 107
L F NQ+ PL L+ + L + N
Sbjct: 144 ISALSGLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSDIS------------ 189
Query: 108 XIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLK 165
VL L +L ++ + NQ S P LG L+NLD+L L N G++ S L
Sbjct: 190 ----VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LT 239
Query: 166 SLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225
+L LDL+ NQ+ PLS L+ LT + L N +S P L L +L+ L L+ NQL
Sbjct: 240 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 295
Query: 226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285
+ P I NL +L L LY N + P + LT L L N +S V S+ NLT
Sbjct: 296 EDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLT 349
Query: 286 GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN-------NLSGKVNVPKLGTFIISVN 338
+ L+ N +S P NLT + ++ LN N V++P +V
Sbjct: 350 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN------TVK 401
Query: 339 NISESI--PPEIGDSPKLQVLDLSSN--NIVGEI------PVQLGK 374
N++ ++ P I D D++ N + E+ PV +GK
Sbjct: 402 NVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGK 447
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 141/297 (47%), Gaps = 43/297 (14%)
Query: 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
A S L L+ S N + + P + NL+ L+ LD+ SN++S + L L L L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVL--AKLTNLESLI 201
Query: 62 FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLST 121
NQ+ PL G L+ ++ L+L N L +L +L+
Sbjct: 202 ATNNQISDITPL--GILTNLDELSLNGNQLKDIG----------------TLASLTNLTD 243
Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
+DL+ NQ S PLS L+ L +L L +N S P + L +L L+L+ENQL
Sbjct: 244 LDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 299
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
P+S NL +LT ++L+ N++S P + +L L L N++S V SS+ NL+++
Sbjct: 300 PIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINW 353
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV---------IPHSIGNLTGLLL 289
L +N + P + LT +++L L + IP+++ N+TG L+
Sbjct: 354 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 408
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 117/251 (46%), Gaps = 59/251 (23%)
Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
L++LT ++ NN L+ P L NL L + ++ NQ++ + P + NL++L L L+NN
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
+ P ++ LT+L+ LEL +N +S + ++ LT L L+ N ++ P N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE 367
LT++ER LD+SSN V +
Sbjct: 172 LTTLER-------------------------------------------LDISSNK-VSD 187
Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427
I V L KL +L LI NQ+S PL G L L L L+ N+LK ++ +L L
Sbjct: 188 ISV-LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLT 242
Query: 428 YLDLSNNQFGH 438
LDL+NNQ +
Sbjct: 243 DLDLANNQISN 253
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 1/223 (0%)
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN-QLIGSIP 182
L N+ S S + NL L+L+SN+ +G + L L QLDLS+N QL P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
+F L L + L L P + L +L L L N L + ++ +L +L L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
+L+ N + S R L SL L L NH++ V PH+ +L L+ L + N+LS
Sbjct: 158 FLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPA 217
Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIP 345
+ L S++ + LN N L ++ S +P
Sbjct: 218 EVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 260
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 76/190 (40%), Gaps = 15/190 (7%)
Query: 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSN-QLSGVIPLEIGHLNQLRIL 60
+F S +L L L N L GI L+ L+ LDL N QL V P L L L
Sbjct: 50 SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 61 YFDVNQL--------HGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLV 112
+ D L G L+ L N+ AL N F IP V
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTF--RDLGNLTHLFLHGNRIPSV 167
Query: 113 ----LGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLL 168
L+SL + L QN + P + +L L LYL++N+ S ++ L+SL
Sbjct: 168 PEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQ 227
Query: 169 QLDLSENQLI 178
L L++N +
Sbjct: 228 YLRLNDNPWV 237
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/390 (29%), Positives = 176/390 (45%), Gaps = 52/390 (13%)
Query: 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRI---LYFD 63
LV + ++ N + I P + NL+NL L L +NQ++ + PL+ + +LN+L + D
Sbjct: 86 KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 143
Query: 64 VNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMD 123
++ L G L+ QL+ N + I VL L +L ++
Sbjct: 144 ISALSGLTSLQ--QLNFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLI 200
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLKSLLQLDLSENQLIGSI 181
+ NQ S P LG L+NLD+L L N G++ S L +L LDL+ NQ+
Sbjct: 201 ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLA 254
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
PLS L+ LT + L N +S P L L +L+ L L+ NQL + P I NL +L
Sbjct: 255 PLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 308
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
L LY N + P + LT L L N +S V S+ NLT + L+ N +S
Sbjct: 309 LTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLT 364
Query: 302 PKSFKNLTSVERVLLNQN-------NLSGKVNVPKLGTFIISVNNISESI--PPEIGDSP 352
P NLT + ++ LN N V++P +V N++ ++ P I D
Sbjct: 365 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN------TVKNVTGALIAPATISDGG 416
Query: 353 KLQVLDLSSN--NIVGEI------PVQLGK 374
D++ N + E+ PV +GK
Sbjct: 417 SYTEPDITWNLPSYTNEVSYTFSQPVTIGK 446
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 120/405 (29%), Positives = 188/405 (46%), Gaps = 75/405 (18%)
Query: 30 LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
L+NL ++ +NQL+ + PL+ +L +L + + NQ+ P
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 102
Query: 90 YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
L NL +L+ + L NQ + PL NL+NL++L L
Sbjct: 103 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
SN+ S I ++ G L SL QL+ NQ+ PL NL++L + + +N +S S+
Sbjct: 138 SNTIS-DISALSG-LTSLQQLNFG-NQVTDLKPL--ANLTTLERLDISSNKVSDISVLAK 192
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
L NL+SL A NQ+S + P +G L++L L L N L + LT+L++L+L
Sbjct: 193 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 245
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
N +S + P + LT L L + N +S P LT++ + LN+N ++S
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 301
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
N+ L + NNIS+ P + KLQ L SNN V ++ L L ++N L
Sbjct: 302 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFSNNKVSDVS-SLANLTNINWLSAGH 357
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
NQ+S PL L + +L D + TN K SIP ++ N+
Sbjct: 358 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 402
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 140/297 (47%), Gaps = 44/297 (14%)
Query: 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
A S L LN N + + P + NL+ L+ LD+ SN++S + L L L L
Sbjct: 146 ALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVL--AKLTNLESLI 200
Query: 62 FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLST 121
NQ+ PL G L+ ++ L+L N L +L +L+
Sbjct: 201 ATNNQISDITPL--GILTNLDELSLNGNQLKDIG----------------TLASLTNLTD 242
Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
+DL+ NQ S PLS L+ L +L L +N S P + L +L L+L+ENQL
Sbjct: 243 LDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 298
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
P+S NL +LT ++L+ N++S P + +L L L N++S V SS+ NL+++
Sbjct: 299 PIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINW 352
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV---------IPHSIGNLTGLLL 289
L +N + P + LT +++L L + IP+++ N+TG L+
Sbjct: 353 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 407
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 60/251 (23%)
Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
L++LT ++ NN L+ P L NL L + ++ NQ++ + P + NL++L L L+NN
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
+ P ++ LT+L+ LEL +N +S + ++ LT L LN N ++ P N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LAN 170
Query: 308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE 367
LT++ER LD+SSN V +
Sbjct: 171 LTTLER-------------------------------------------LDISSNK-VSD 186
Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427
I V L KL +L LI NQ+S PL G L L L L+ N+LK ++ +L L
Sbjct: 187 ISV-LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLT 241
Query: 428 YLDLSNNQFGH 438
LDL+NNQ +
Sbjct: 242 DLDLANNQISN 252
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 115/390 (29%), Positives = 176/390 (45%), Gaps = 52/390 (13%)
Query: 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRI---LYFD 63
LV + ++ N + I P + NL+NL L L +NQ++ + PL+ + +LN+L + D
Sbjct: 86 KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 143
Query: 64 VNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMD 123
++ L G L+ QL+ N + I VL L +L ++
Sbjct: 144 ISALSGLTSLQ--QLNFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLI 200
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLKSLLQLDLSENQLIGSI 181
+ NQ S P LG L+NLD+L L N G++ S L +L LDL+ NQ+
Sbjct: 201 ATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLA 254
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
PLS L+ LT + L N +S P L L +L+ L L+ NQL + P I NL +L
Sbjct: 255 PLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 308
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
L LY N + P + LT L L N +S V S+ NLT + L+ N +S
Sbjct: 309 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT 364
Query: 302 PKSFKNLTSVERVLLNQN-------NLSGKVNVPKLGTFIISVNNISESI--PPEIGDSP 352
P NLT + ++ LN N V++P +V N++ ++ P I D
Sbjct: 365 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN------TVKNVTGALIAPATISDGG 416
Query: 353 KLQVLDLSSN--NIVGEI------PVQLGK 374
D++ N + E+ PV +GK
Sbjct: 417 SYTEPDITWNLPSYTNEVSYTFSQPVTIGK 446
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 141/297 (47%), Gaps = 44/297 (14%)
Query: 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
A S L LN N + + P + NL+ L+ LD+ SN++S + L L L L
Sbjct: 146 ALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVL--AKLTNLESLI 200
Query: 62 FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLST 121
NQ+ PL G L+ ++ L+L N L +L +L+
Sbjct: 201 ATNNQISDITPL--GILTNLDELSLNGNQLKDIG----------------TLASLTNLTD 242
Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
+DL+ NQ S PLS L+ L +L L +N S P + L +L L+L+ENQL
Sbjct: 243 LDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 298
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
P+S NL +LT ++L+ N++S P + +L L L + N++S V SS+ NL+++
Sbjct: 299 PIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW 352
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV---------IPHSIGNLTGLLL 289
L +N + P + LT +++L L + IP+++ N+TG L+
Sbjct: 353 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 407
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 187/405 (46%), Gaps = 75/405 (18%)
Query: 30 LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
L+NL ++ +NQL+ + PL+ +L +L + + NQ+ P
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 102
Query: 90 YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
L NL +L+ + L NQ + PL NL+NL++L L
Sbjct: 103 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
SN+ S I ++ G L SL QL+ NQ+ PL NL++L + + +N +S S+
Sbjct: 138 SNTIS-DISALSG-LTSLQQLNFG-NQVTDLKPL--ANLTTLERLDISSNKVSDISVLAK 192
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
L NL+SL A NQ+S + P +G L++L L L N L + LT+L++L+L
Sbjct: 193 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 245
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
N +S + P + LT L L + N +S P LT++ + LN+N ++S
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 301
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
N+ L + NNIS+ P + KLQ L NN V ++ L L ++N L
Sbjct: 302 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLANLTNINWLSAGH 357
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
NQ+S PL L + +L D + TN K SIP ++ N+
Sbjct: 358 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 402
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 60/251 (23%)
Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
L++LT ++ NN L+ P L NL L + ++ NQ++ + P + NL++L L L+NN
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
+ P ++ LT+L+ LEL +N +S + ++ LT L LN N ++ P N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LAN 170
Query: 308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE 367
LT++ER LD+SSN V +
Sbjct: 171 LTTLER-------------------------------------------LDISSNK-VSD 186
Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427
I V L KL +L LI NQ+S PL G L L L L+ N+LK ++ +L L
Sbjct: 187 ISV-LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLT 241
Query: 428 YLDLSNNQFGH 438
LDL+NNQ +
Sbjct: 242 DLDLANNQISN 252
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 142/297 (47%), Gaps = 43/297 (14%)
Query: 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
A S L LN S N + + P + NL+ L+ LD+ SN++S + L L L L
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVL--AKLTNLESLI 201
Query: 62 FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLST 121
NQ+ PL G L+ ++ L+L N L +L +L+
Sbjct: 202 ATNNQISDITPL--GILTNLDELSLNGNQLKDIG----------------TLASLTNLTD 243
Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
+DL+ NQ S PLS L+ L +L L +N S P + L +L L+L+ENQL
Sbjct: 244 LDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 299
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
P+S NL +LT ++L+ N++S P + +L L L + N++S V SS+ NL+++
Sbjct: 300 PIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW 353
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV---------IPHSIGNLTGLLL 289
L +N + P + LT +++L L + IP+++ N+TG L+
Sbjct: 354 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 408
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 176/406 (43%), Gaps = 83/406 (20%)
Query: 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRI------- 59
LV + ++ N + I P + NL+NL L L +NQ++ + PL+ + +LN+L +
Sbjct: 86 KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 143
Query: 60 ------------LYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXX 107
L F NQ+ PL L+ + L + N
Sbjct: 144 ISALSGLTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSNKVSDIS------------ 189
Query: 108 XIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLK 165
VL L +L ++ + NQ S P LG L+NLD+L L N G++ S L
Sbjct: 190 ----VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LT 239
Query: 166 SLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225
+L LDL+ NQ+ PLS L+ LT + L N +S P L L +L+ L L+ NQL
Sbjct: 240 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 295
Query: 226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285
+ P I NL +L L LY N + P + LT L L N +S V S+ NLT
Sbjct: 296 EDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT 349
Query: 286 GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN-------NLSGKVNVPKLGTFIISVN 338
+ L+ N +S P NLT + ++ LN N V++P +V
Sbjct: 350 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN------TVK 401
Query: 339 NISESI--PPEIGDSPKLQVLDLSSN--NIVGEI------PVQLGK 374
N++ ++ P I D D++ N + E+ PV +GK
Sbjct: 402 NVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGK 447
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 120/405 (29%), Positives = 188/405 (46%), Gaps = 74/405 (18%)
Query: 30 LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
L+NL ++ +NQL+ + PL+ +L +L + + NQ+ P
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 102
Query: 90 YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
L NL +L+ + L NQ + PL NL+NL++L L
Sbjct: 103 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
SN+ S I ++ G L SL QL+ S NQ+ PL NL++L + + +N +S S+
Sbjct: 138 SNTIS-DISALSG-LTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAK 193
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
L NL+SL A NQ+S + P +G L++L L L N L + LT+L++L+L
Sbjct: 194 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 246
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
N +S + P + LT L L + N +S P LT++ + LN+N ++S
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 302
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
N+ L + NNIS+ P + KLQ L NN V ++ L L ++N L
Sbjct: 303 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLANLTNINWLSAGH 358
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
NQ+S PL L + +L D + TN K SIP ++ N+
Sbjct: 359 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 403
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 59/251 (23%)
Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
L++LT ++ NN L+ P L NL L + ++ NQ++ + P + NL++L L L+NN
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
+ P ++ LT+L+ LEL +N +S + ++ LT L LN N ++ P N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LAN 171
Query: 308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE 367
LT++ER LD+SSN V +
Sbjct: 172 LTTLER-------------------------------------------LDISSNK-VSD 187
Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427
I V L KL +L LI NQ+S PL G L L L L+ N+LK ++ +L L
Sbjct: 188 ISV-LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLT 242
Query: 428 YLDLSNNQFGH 438
LDL+NNQ +
Sbjct: 243 DLDLANNQISN 253
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 176/406 (43%), Gaps = 83/406 (20%)
Query: 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLE-IGHLNQLRI------- 59
LV + ++ N + I P + NL+NL L L +NQ++ + PL+ + +LN+L +
Sbjct: 86 KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 143
Query: 60 ------------LYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXX 107
L F NQ+ PL L+ + L + N
Sbjct: 144 ISALSGLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSDIS------------ 189
Query: 108 XIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLK 165
VL L +L ++ + NQ S P LG L+NLD+L L N G++ S L
Sbjct: 190 ----VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LT 239
Query: 166 SLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225
+L LDL+ NQ+ PLS L+ LT + L N +S P L L +L+ L L+ NQL
Sbjct: 240 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 295
Query: 226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285
+ P I NL +L L LY N + P + LT L L N +S V S+ NLT
Sbjct: 296 EDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT 349
Query: 286 GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN-------NLSGKVNVPKLGTFIISVN 338
+ L+ N +S P NLT + ++ LN N V++P +V
Sbjct: 350 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN------TVK 401
Query: 339 NISESI--PPEIGDSPKLQVLDLSSN--NIVGEI------PVQLGK 374
N++ ++ P I D D++ N + E+ PV +GK
Sbjct: 402 NVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGK 447
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 120/405 (29%), Positives = 187/405 (46%), Gaps = 74/405 (18%)
Query: 30 LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
L+NL ++ +NQL+ + PL+ +L +L + + NQ+ P
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP----------------- 102
Query: 90 YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
L NL +L+ + L NQ + PL NL+NL++L L
Sbjct: 103 -----------------------LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS 137
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPI 208
SN+ S I ++ G L SL QL S NQ+ PL NL++L + + +N +S S+
Sbjct: 138 SNTIS-DISALSG-LTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAK 193
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
L NL+SL A NQ+S + P +G L++L L L N L + LT+L++L+L
Sbjct: 194 LTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 246
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN---NLSGKV 325
N +S + P + LT L L + N +S P LT++ + LN+N ++S
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS 302
Query: 326 NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385
N+ L + NNIS+ P + KLQ L NN V ++ L L ++N L
Sbjct: 303 NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLANLTNINWLSAGH 358
Query: 386 NQLSGGMPLE-LGSLIELQYLDLS-TN-----KLKSSIPKSIGNL 423
NQ+S PL L + +L D + TN K SIP ++ N+
Sbjct: 359 NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 403
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 142/297 (47%), Gaps = 43/297 (14%)
Query: 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
A S L L+ S N + + P + NL+ L+ LD+ SN++S + L L L L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVL--AKLTNLESLI 201
Query: 62 FDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLST 121
NQ+ PL G L+ ++ L+L N L +L +L+
Sbjct: 202 ATNNQISDITPL--GILTNLDELSLNGNQLKDIG----------------TLASLTNLTD 243
Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
+DL+ NQ S PLS L+ L +L L +N S P + L +L L+L+ENQL
Sbjct: 244 LDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 299
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241
P+S NL +LT ++L+ N++S P + +L L L + N++S V SS+ NL+++
Sbjct: 300 PIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW 353
Query: 242 LYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV---------IPHSIGNLTGLLL 289
L +N + P + LT +++L L + IP+++ N+TG L+
Sbjct: 354 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 408
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 117/251 (46%), Gaps = 59/251 (23%)
Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
L++LT ++ NN L+ P L NL L + ++ NQ++ + P + NL++L L L+NN
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKN 307
+ P ++ LT+L+ LEL +N +S + ++ LT L L+ N ++ P N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 308 LTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGE 367
LT++ER LD+SSN V +
Sbjct: 172 LTTLER-------------------------------------------LDISSNK-VSD 187
Query: 368 IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427
I V L KL +L LI NQ+S PL G L L L L+ N+LK ++ +L L
Sbjct: 188 ISV-LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLT 242
Query: 428 YLDLSNNQFGH 438
LDL+NNQ +
Sbjct: 243 DLDLANNQISN 253
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 1/223 (0%)
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI-P 182
L N+ S S NL L+L+SN + + L L QLDLS+N + S+ P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
+F L L + L L P + L +L L L N L + + +L +L L
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 157
Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
+L+ N + S R L SL L L N ++ V PH+ +L L+ L + N+LS
Sbjct: 158 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 217
Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIP 345
++ L +++ + LN N L ++ S +P
Sbjct: 218 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 260
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN 175
L+SL + L QN+ + P + +L L LYL++N+ S + L++L L L++N
Sbjct: 175 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Query: 176 QLI 178
+
Sbjct: 235 PWV 237
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 1/223 (0%)
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI-P 182
L N+ S S NL L+L+SN + + L L QLDLS+N + S+ P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
+F L L + L L P + L +L L L N L + + +L +L L
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158
Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
+L+ N + S R L SL L L N ++ V PH+ +L L+ L + N+LS
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218
Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIP 345
++ L +++ + LN N L ++ S +P
Sbjct: 219 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 261
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN 175
L+SL + L QN+ + P + +L L LYL++N+ S + L++L L L++N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Query: 176 QLI 178
+
Sbjct: 236 PWV 238
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 13/207 (6%)
Query: 118 SLSTMDLSQNQFSGSIPLS-----LGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172
SL +DLS F+G I +S L L +LD + +SN S S+ +L++L+ LD+
Sbjct: 374 SLKYLDLS---FNGVITMSSNFLGLEQLEHLD--FQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGS-LPPILGNLKSLSALGLHINQLSGVIPS 231
S + F LSSL ++ + NS + LP I L++L+ L L QL + P+
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 232 SIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNL-TGLLLL 290
+ +LSSL+ L + +N +S + L SL L+ NH+ + + + L L
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548
Query: 291 NMCENHLSGPIP-KSFKNLTSVERVLL 316
N+ +N + +SF +R LL
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLL 575
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 20/229 (8%)
Query: 9 LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH 68
L +L+LSFN + + +G L L++LD + L + + L+ ++Y D++ H
Sbjct: 375 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDISHTH 432
Query: 69 GSIPLE--IGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQ 126
+ LS + VL + N F +P + L +L+ +DLSQ
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSF-------------QENFLPDIFTELRNLTFLDLSQ 479
Query: 127 NQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG 186
Q P + +LS+L L + N+F L SL LD S N ++ S
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539
Query: 187 NL-SSLTLMSLFNNSLSGSLP--PILGNLKSLSALGLHINQLSGVIPSS 232
+ SSL ++L N + + L +K L + + ++ PS
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 9 LVHLNLSFNILFGI-IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQL 57
L LN++ N++ +P NL+NL++LDL SN++ + ++ L+Q+
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
L L L ++ + + +LS L L L N + S L+SL +L +L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 274 SGVIPHSIGNLTGLLLLNMCENHL-SGPIPKSFKNLTSVERVLLNQNNLSG 323
+ + IG+L L LN+ N + S +P+ F NLT++E + L+ N +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 7/201 (3%)
Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSN--SFSGSIPSIIGNLKSLLQLDLS 173
L SL + + N+ G S +L +L+ L L N SF G SL LDLS
Sbjct: 324 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPILGNLKSLSALGLHINQLSGVIPSS 232
N +I ++ +F L L + +++L S + +L++L L +
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 233 IGNLSSLRALYLYNNGLYS-FVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLN 291
LSSL L + N F+P+ L +L+ L+L L + P + +L+ L +LN
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 292 MCENHLSGPIPKSFKNLTSVE 312
M N+ +K L S++
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQ 521
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 13/207 (6%)
Query: 118 SLSTMDLSQNQFSGSIPLS-----LGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172
SL +DLS F+G I +S L L +LD + +SN S S+ +L++L+ LD+
Sbjct: 398 SLKYLDLS---FNGVITMSSNFLGLEQLEHLD--FQHSNLKQMSEFSVFLSLRNLIYLDI 452
Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGS-LPPILGNLKSLSALGLHINQLSGVIPS 231
S + F LSSL ++ + NS + LP I L++L+ L L QL + P+
Sbjct: 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512
Query: 232 SIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNL-TGLLLL 290
+ +LSSL+ L + +N +S + L SL L+ NH+ + + + L L
Sbjct: 513 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572
Query: 291 NMCENHLSGPIP-KSFKNLTSVERVLL 316
N+ +N + +SF +R LL
Sbjct: 573 NLTQNDFACTCEHQSFLQWIKDQRQLL 599
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 20/229 (8%)
Query: 9 LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH 68
L +L+LSFN + + +G L L++LD + L + + L+ ++Y D++ H
Sbjct: 399 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDISHTH 456
Query: 69 GSIPLE--IGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQ 126
+ LS + VL + N F +P + L +L+ +DLSQ
Sbjct: 457 TRVAFNGIFNGLSSLEVLKMAGNSF-------------QENFLPDIFTELRNLTFLDLSQ 503
Query: 127 NQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG 186
Q P + +LS+L L + N+F L SL LD S N ++ S
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 563
Query: 187 NL-SSLTLMSLFNNSLSGSLP--PILGNLKSLSALGLHINQLSGVIPSS 232
+ SSL ++L N + + L +K L + + ++ PS
Sbjct: 564 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 612
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 9 LVHLNLSFNILFGI-IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQL 57
L LN++ N++ +P NL+NL++LDL SN++ + ++ L+Q+
Sbjct: 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
L L L ++ + + +LS L L L N + S L+SL +L +L
Sbjct: 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136
Query: 274 SGVIPHSIGNLTGLLLLNMCENHL-SGPIPKSFKNLTSVERVLLNQNNL 321
+ + IG+L L LN+ N + S +P+ F NLT++E + L+ N +
Sbjct: 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 13/207 (6%)
Query: 118 SLSTMDLSQNQFSGSIPLS-----LGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172
SL +DLS F+G I +S L L +LD + +SN S S+ +L++L+ LD+
Sbjct: 79 SLKYLDLS---FNGVITMSSNFLGLEQLEHLD--FQHSNLKQMSEFSVFLSLRNLIYLDI 133
Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGS-LPPILGNLKSLSALGLHINQLSGVIPS 231
S + F LSSL ++ + NS + LP I L++L+ L L QL + P+
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 232 SIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNL-TGLLLL 290
+ +LSSL+ L + +N +S + L SL L+ NH+ + + + L L
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253
Query: 291 NMCENHLSGPIP-KSFKNLTSVERVLL 316
N+ +N + +SF +R LL
Sbjct: 254 NLTQNDFACTCEHQSFLQWIKDQRQLL 280
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 20/228 (8%)
Query: 9 LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH 68
L +L+LSFN + + +G L L++LD + L + + L+ ++Y D++ H
Sbjct: 80 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDISHTH 137
Query: 69 GSIPLE--IGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQ 126
+ LS + VL + N F +P + L +L+ +DLSQ
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSF-------------QENFLPDIFTELRNLTFLDLSQ 184
Query: 127 NQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG 186
Q P + +LS+L L + N+F L SL LD S N ++ S
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244
Query: 187 NL-SSLTLMSLFNNSLSGSLP--PILGNLKSLSALGLHINQLSGVIPS 231
+ SSL ++L N + + L +K L + + ++ PS
Sbjct: 245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 5/165 (3%)
Query: 137 LGNLSNLDKLYLYSN--SFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLM 194
L+ L KL L SN SF G SL LDLS N +I ++ +F L L +
Sbjct: 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106
Query: 195 SLFNNSLSG-SLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS-F 252
+++L S + +L++L L + LSSL L + N F
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166
Query: 253 VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHL 297
+P+ L +L+ L+L L + P + +L+ L +LNM N+
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 22/256 (8%)
Query: 188 LSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
L++L ++L N ++ P L NL L+ L + N+++ + S++ NL++LR LYL +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED 120
Query: 248 GLYSFVPEEIRYLTSLSELELCTNH-LSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFK 306
+ P + LT L L NH LS + P + N TGL L + E+ + P
Sbjct: 121 NISDISP--LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTP--IA 174
Query: 307 NLTSVERVLLNQN---NLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNN 363
NLT + + LN N ++S ++ L F VN I++ P + + +L L + +N
Sbjct: 175 NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNK 232
Query: 364 IVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNL 423
I P L L L L + NQ+S ++ L +L+ L++ +N++ S + NL
Sbjct: 233 ITDLSP--LANLSQLTWLEIGTNQISDINAVK--DLTKLKXLNVGSNQI--SDISVLNNL 286
Query: 424 LRLCYLDLSNNQFGHK 439
+L L L+NNQ G++
Sbjct: 287 SQLNSLFLNNNQLGNE 302
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 126/282 (44%), Gaps = 27/282 (9%)
Query: 6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
+L +LNL+ N + I P + NL L L +G+N+++ + L+ +L LR LY + +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQ--NLTNLRELYLNED 120
Query: 66 QLHGSIPLEIGQLSLINVLALCHNYFVCXXX---------XXXXXXXXXXXXIPLVLGNL 116
+ PL L+ L L N+ + P+ NL
Sbjct: 121 NISDISPL--ANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPI--ANL 176
Query: 117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ 176
L ++ L+ NQ PL +L++L Y N + P + N L L + N+
Sbjct: 177 TDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNK 232
Query: 177 LIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNL 236
+ PL NLS LT + + N +S + +L L L + NQ+S + S + NL
Sbjct: 233 ITDLSPL--ANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISDI--SVLNNL 286
Query: 237 SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIP 278
S L +L+L NN L + E I LT+L+ L L NH++ + P
Sbjct: 287 SQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 40/178 (22%)
Query: 27 IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL 86
I NL++L L L NQ+ + PL L L VNQ+ P + + +N L +
Sbjct: 173 IANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP--VANXTRLNSLKI 228
Query: 87 CHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFS---------------- 130
+N L NL+ L+ +++ NQ S
Sbjct: 229 GNNKITDLSP----------------LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNV 272
Query: 131 GSIPLS----LGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS 184
GS +S L NLS L+ L+L +N +IG L +L L LS+N + PL+
Sbjct: 273 GSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLA 330
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 140 LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN 199
L NL+ L++ N + L +L +L L NQL P F +L+ LT +SL N
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 200 SLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPE 255
L SLP + L SL L L+ NQL V + L+ L+ L L NN L VPE
Sbjct: 144 ELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPE 198
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 7/205 (3%)
Query: 117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSEN 175
N+ +++D S + + +IP ++ ++ KL L SN S S+PS L L L L++N
Sbjct: 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDN 71
Query: 176 QLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIG 234
+L ++P F L +L + + +N L + L +L+ L L NQL + P
Sbjct: 72 KL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130
Query: 235 NLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE 294
+L+ L L L N L S LTSL EL L N L V + LT L L +
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
Query: 295 NHLSGPIPKSFKNLTSVERVLLNQN 319
N L +F +L ++ + L +N
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 88/219 (40%), Gaps = 42/219 (19%)
Query: 31 SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNY 90
++ + LDL SN+LS + L +LR+LY + N+L ++P I
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGI--------------- 80
Query: 91 FVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSL-GNLSNLDKLYLY 149
L +L T+ ++ N+ ++P+ + L NL +L L
Sbjct: 81 ----------------------FKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPPI 208
N P + +L L L L N+L S+P F L+SL + L+NN L
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
L L L L NQL V + +L L+ L L N
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 6/166 (3%)
Query: 169 QLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSG 227
+LDL N+L +F L+ L L+ L +N L +LP I LK+L L + N+L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 228 VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGL 287
+ L +L L L N L S P LT L+ L L N L + LT L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 288 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF 333
L + N L +F LT ++ + L+ N L VP+ G F
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK---RVPE-GAF 201
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 264 SELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSG 323
+L+L +N LS + + LT L LL + +N L FK L ++E + + N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 324 KVNVPKLGTFIISVN--------NISESIPPEIGDS-PKLQVLDLSSNNIVGEIPVQLGK 374
+P +G F VN N +S+PP + DS KL L L N + K
Sbjct: 100 ---LP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 375 LFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNN 434
L SL +L L NQL L EL+ L L N+LK + +L +L L L N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Query: 435 QF 436
+
Sbjct: 216 PW 217
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%)
Query: 3 FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
F S L +L+L +N L + L++L+ L L +NQL V L +L+ L
Sbjct: 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188
Query: 63 DVNQLHGSIPLEIGQLSLINVLALCHNYFVC 93
D NQL L + +L L N + C
Sbjct: 189 DNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 73/172 (42%), Gaps = 25/172 (14%)
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVP 328
C++ IP +I T L L N LS K+F LT + + LN N L
Sbjct: 23 CSSKKLTAIPSNIPADTKKLDLQ--SNKLSSLPSKAFHRLTKLRLLYLNDNKLQ------ 74
Query: 329 KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQ 387
+ I E+ + L V D N + +P+ + +L +L +L L+ NQ
Sbjct: 75 ----------TLPAGIFKELKNLETLWVTD----NKLQALPIGVFDQLVNLAELRLDRNQ 120
Query: 388 LSGGMPLELGSLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQFGH 438
L P SL +L YL L N+L+ S+PK + L L L L NNQ
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR 171
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 36/87 (41%)
Query: 3 FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
F +L L L N L + P +L+ L YL LG N+L + L L+ L
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164
Query: 63 DVNQLHGSIPLEIGQLSLINVLALCHN 89
NQL +L+ + L L +N
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNN 191
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 13/177 (7%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
L L +L+ + L+ NQ S+P + L+NL +L L N + L +L L
Sbjct: 80 ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 171 DLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGV 228
+L+ NQL S+P F L++LT + L N L SLP + L L L L+ NQL V
Sbjct: 139 NLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285
L+SL+ ++L++N P IRYL+ N SGV+ +S G++
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCP-GIRYLSEW------INKHSGVVRNSAGSVA 246
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 31/215 (14%)
Query: 27 IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEI-GQLSLINVLA 85
I L N++YL LG N+L + L+ L L L NQL S+P + +L+ + L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 86 LCHNYFVCXXXXXXXXXXXXXXXIPL-VLGNLNSLSTMDLSQNQFSGSIPLSL-GNLSNL 143
L N +P V L +L+ ++L+ NQ S+P + L+NL
Sbjct: 116 LVENQL---------------QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNL 159
Query: 144 DKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLS 202
+L L N + L L L L +NQL S+P F L+SL + L +N
Sbjct: 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWD 218
Query: 203 GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLS 237
+ P I L IN+ SGV+ +S G+++
Sbjct: 219 CTCPGI-------RYLSEWINKHSGVVRNSAGSVA 246
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 3 FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
F +L +LNL+ N L + L+NL LDL NQL + L QL+ L
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Query: 63 DVNQLHGSIPLEI-GQLSLINVLALCHNYFVC 93
NQL S+P + +L+ + + L N + C
Sbjct: 189 YQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 219
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 372 LGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLD 430
KL +L +L+L NQL L L YL+L+ N+L+ S+PK + L L LD
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELD 163
Query: 431 LSNNQF 436
LS NQ
Sbjct: 164 LSYNQL 169
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 7/166 (4%)
Query: 257 IRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLL 316
I+YL ++ L L N L + ++ LT L L + N L F LT+++ ++L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 317 NQNNLSGKVN--VPKLG--TFIISVNNISESIPPEIGDS-PKLQVLDLSSNNIVGEIPVQ 371
+N L + KL T++ +N +S+P + D L LDLS N +
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Query: 372 LGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIP 417
KL L L L NQL L LQY+ L N + P
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%)
Query: 169 QLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGV 228
+LDL L +F L+ LT ++L N L + +L L LGL NQL+ +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
+L+ L LYL N L S LT L EL L TN L + + LT L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 289 LLNMCENHLSGPIPKSFKNLTSVERVLL 316
L++ N L +F L ++ + L
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 11/115 (9%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQ 169
V +L L T+ L+ NQ + S+PL + +L+ LDKLYL N S+PS + L L +
Sbjct: 78 VFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKE 135
Query: 170 LDLSENQLIGSIPL-SFGNLSSLTLMSLFNNSLSGSLP----PILGNLKSLSALG 219
L L+ NQL SIP +F L++L +SL N L S+P LG L++++ G
Sbjct: 136 LRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 69/164 (42%), Gaps = 22/164 (13%)
Query: 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRIL 60
F L LNL +N L + +L+ L L L +NQL+ +PL + HL QL L
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKL 112
Query: 61 YFDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPL-VLGNLNS 118
Y NQL S+P + +L+ + L L N IP L +
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL---------------QSIPAGAFDKLTN 156
Query: 119 LSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSII 161
L T+ LS NQ S+P + L L + L+ N F S I+
Sbjct: 157 LQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 78/208 (37%), Gaps = 45/208 (21%)
Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
+PS I + L L + GL + R LT L+ L L N L + +LT L
Sbjct: 29 VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 289 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI 348
L + N L+ F +LT ++++ L N L +S+P +
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL--------------------KSLPSGV 126
Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLS 408
D +L L +L LN NQL L LQ L LS
Sbjct: 127 FD-----------------------RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 409 TNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
TN+L+S + L +L + L NQF
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 187 NLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYN 246
+L S L +L + + G L L+ L L NQL + +L+ L L L N
Sbjct: 41 DLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92
Query: 247 NGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFK 306
N L S +LT L +L L N L + LT L L + N L +F
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 307 NLTSVERVLLNQNNL 321
LT+++ + L+ N L
Sbjct: 153 KLTNLQTLSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%)
Query: 169 QLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGV 228
+LDL L +F L+ LT ++L N L + +L L LGL NQL+ +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
+L+ L LYL N L S LT L EL L TN L + + LT L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 289 LLNMCENHLSGPIPKSFKNLTSVERVLL 316
L++ N L +F L ++ + L
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 11/115 (9%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQ 169
V +L L T+ L+ NQ + S+PL + +L+ LDKLYL N S+PS + L L +
Sbjct: 78 VFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKE 135
Query: 170 LDLSENQLIGSIPL-SFGNLSSLTLMSLFNNSLSGSLP----PILGNLKSLSALG 219
L L+ NQL SIP +F L++L +SL N L S+P LG L++++ G
Sbjct: 136 LRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 67/159 (42%), Gaps = 22/159 (13%)
Query: 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRIL 60
F L LNL +N L + +L+ L L L +NQL+ +PL + HL QL L
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKL 112
Query: 61 YFDVNQLHGSIPLEI-GQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPL-VLGNLNS 118
Y NQL S+P + +L+ + L L N IP L +
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL---------------QSIPAGAFDKLTN 156
Query: 119 LSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGS 156
L T+ LS NQ S+P + L L + L+ N F S
Sbjct: 157 LQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 78/208 (37%), Gaps = 45/208 (21%)
Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
+PS I + L L + GL + R LT L+ L L N L + +LT L
Sbjct: 29 VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 289 LLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI 348
L + N L+ F +LT ++++ L N L +S+P +
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL--------------------KSLPSGV 126
Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLS 408
D +L L +L LN NQL L LQ L LS
Sbjct: 127 FD-----------------------RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 409 TNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
TN+L+S + L +L + L NQF
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 187 NLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYN 246
+L S L +L + + G L L+ L L NQL + +L+ L L L N
Sbjct: 41 DLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92
Query: 247 NGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFK 306
N L S +LT L +L L N L + LT L L + N L +F
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 307 NLTSVERVLLNQNNL 321
LT+++ + L+ N L
Sbjct: 153 KLTNLQTLSLSTNQL 167
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 15/176 (8%)
Query: 114 GNLNSLSTMDLSQNQFSG--SIPLSLGNLSNLDKLYLYSNSF-SGSIPSIIGNLKSLLQL 170
L L T+ L +N + L N+S+L+ L + NS S + +S+L L
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 171 DLSENQLIGSIPLSFGNLS-SLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVI 229
+LS N L GS+ F L + ++ L NN + S+P + +L++L L + NQL V
Sbjct: 434 NLSSNMLTGSV---FRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVP 489
Query: 230 PSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLT 285
L+SL+ ++L++N P IRYL+ N SGV+ +S G++
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCP-GIRYLSEW------INKHSGVVRNSAGSVA 538
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 17/144 (11%)
Query: 295 NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKL 354
N L + S +NLT V + L P+ +S N+ISE P+I +L
Sbjct: 30 NELESMVDYSNRNLTHVPKDL-----------PPRTKALSLSQNSISELRMPDISFLSEL 78
Query: 355 QVLDLSSNNIVG-EIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413
+VL LS N I + V L L L ++ N+L + + L++LDLS N
Sbjct: 79 RVLRLSHNRIRSLDFHVFLFNQ-DLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFD 134
Query: 414 S-SIPKSIGNLLRLCYLDLSNNQF 436
+ K GNL +L +L LS +F
Sbjct: 135 VLPVCKEFGNLTKLTFLGLSAAKF 158
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 30/172 (17%)
Query: 151 NSFSGSIPSIIGNLKSLLQLDLSENQL--IGSIPLSFGNLSSLTLMSLFNNSL-SGSLPP 207
N F+ S+ LK L L L N L + L N+SSL + + NSL S +
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+S+ L L N L+G + + ++ L L+NN + S +P+++ +L +L EL
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELN 479
Query: 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 319
+ +N L V P + F LTS++ + L+ N
Sbjct: 480 VASNQLKSV-PDGV-----------------------FDRLTSLQYIWLHDN 507
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK 411
PK++VLDL +N I+ IP + L +L +L + NQL L LQY+ L N
Sbjct: 450 PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
Query: 412 LKSSIP 417
+ P
Sbjct: 509 WDCTCP 514
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 9 LVHLNLSFNILFGIIP--PQIGNLSNLQYLDLGSNQLSGVIPLEIGHLN 55
L HL+LSFN F ++P + GNL+ L +L L + + + L + HL+
Sbjct: 123 LRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 140 LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFN 198
L++L +LYL N + L SL L+LS NQL S+P F L+ L ++L
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNT 109
Query: 199 NSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEI 257
N L SLP + L L L L+ NQL V L+SL+ ++L++N P I
Sbjct: 110 NQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-GI 167
Query: 258 RYLTSLSELELCTNHLSGVIPHSIGNL 284
RYL+ N SGV+ +S G++
Sbjct: 168 RYLSEW------INKHSGVVRNSAGSV 188
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLP-PILGNLKSLSALGLHINQLSGVIPSSIGNLS 237
G + G + T + L NSL SLP + L SL+ L L N+L + L+
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 238 SLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHL 297
SL L L N L S LT L EL L TN L + LT L L + +N L
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 298 SGPIPKSFKNLTSVERVLLNQN 319
F LTS++ + L+ N
Sbjct: 137 KSVPDGVFDRLTSLQYIWLHDN 158
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 43/104 (41%)
Query: 218 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI 277
L L N L + L+SL LYL N L S LTSL+ L L TN L +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 278 PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL 321
LT L L + N L F LT ++ + L QN L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 3 FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
F+ L +LNLS N L + L+ L+ L L +NQL + L QL+ L
Sbjct: 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
Query: 63 DVNQLHGSIPLEI-GQLSLINVLALCHNYFVC 93
NQL S+P + +L+ + + L N + C
Sbjct: 132 YQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 162
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGS-IPSIIGNLKSLLQL 170
V +L +L +D+S + LS+L+ L + NSF + +P I L++L L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 171 DLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230
DLS+ QL P +F +LSSL ++++ +N L I L SL + LH N P
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 7/209 (3%)
Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSN--SFSGSIPSIIGNLKSLLQLDL 172
L SL + + N+ G S +L +L+ L L N SF G SL LDL
Sbjct: 323 KLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPILGNLKSLSALGLHINQLSGVIPS 231
S N +I ++ +F L L + +++L S + +L++L L +
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 232 SIGNLSSLRALYLYNNGLYS-FVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLL 290
LSSL L + N F+P+ L +L+ L+L L + P + +L+ L +L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 291 NMCENHLSGPIPKSFKNLTSVERVLLNQN 319
NM N L F LTS++++ L+ N
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
L L L ++ + + +LS L L L N + S L+SL +L +L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 274 SGVIPHSIGNLTGLLLLNMCENHL-SGPIPKSFKNLTSVERVLLNQNNL 321
+ + IG+L L LN+ N + S +P+ F NLT++E + L+ N +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 22 IIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIP 72
+P L NL +LDL QL + P L+ L++L NQL S+P
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVP 510
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 142 NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSL 201
++ +LYL N F+ +P + N K L +DLS N++ SF N++ L + L N L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 202 SGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLY 250
P LKSL L LH N +S V + +LS+L L + N LY
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 165 KSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQ 224
+ + +L L NQ +P N LTL+ L NN +S N+ L L L N+
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 225 LSGVIPSSIGNLSSLRALYLYNNGLYSFVPE-EIRYLTSLSELELCTNHL 273
L + P + L SLR L L+ N + S VPE L++LS L + N L
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPL 138
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 228 VIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGL 287
V+P I + LYL N ++ VP+E+ L+ ++L N +S + S N+T L
Sbjct: 24 VLPKGIPR--DVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 288 LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322
L L + N L P++F L S+ + L+ N++S
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 20 FGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLS 79
F ++P ++ N +L +DL +N++S + ++ QL L N+L P L
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102
Query: 80 LINVLAL 86
+ +L+L
Sbjct: 103 SLRLLSL 109
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 101/232 (43%), Gaps = 35/232 (15%)
Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGN-LKSLLQLDLSE 174
L SL+T++L N+ + + LS L +L+L +N SIPS N + SL +LDL E
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGE 140
Query: 175 NQLIGSI-PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 233
+ + I +F L +L ++L +L P L L L L L N+L + P S
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNLKDI--PNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293
L+SLR L+L + + + L SL EL L N+L +PH +
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDL------------ 245
Query: 294 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIP 345
F L +ERV LN N +V L + + E++P
Sbjct: 246 -----------FTPLHRLERVHLNHNPWHCNCDVLWLSWW------LKETVP 280
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 3/187 (1%)
Query: 136 SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMS 195
+ +L +L+ L L N L SL L+L +N+L +F LS L +
Sbjct: 54 TFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELW 113
Query: 196 LFNNSLSGSLPPILGNLKSLSALGL-HINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVP 254
L NN + + SL L L + +L + ++ L +LR L L L +P
Sbjct: 114 LRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IP 172
Query: 255 EEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERV 314
+ L L ELEL N L + P S LT L L + ++ +F +L S+E +
Sbjct: 173 -NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 315 LLNQNNL 321
L+ NNL
Sbjct: 232 NLSHNNL 238
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN 175
LN+L ++L NQ + PL NL+ + +L L N S I L+S+ LDL+
Sbjct: 68 LNNLIGLELKDNQITDLTPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 123
Query: 176 QLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 235
Q+ PL+ LS+L ++ L N ++ P L L +L L + NQ++ + P + N
Sbjct: 124 QITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LAN 177
Query: 236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293
LS L L +N + P + L +L E+ L N +S V P + NL+ L ++ +
Sbjct: 178 LSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP--LANLSNLFIVTLT 231
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 80/205 (39%), Gaps = 55/205 (26%)
Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293
+L + L +N G+ + E I+YL +L LEL N ++ + P
Sbjct: 44 ADLDGIATLSAFNTGVTTI--EGIQYLNNLIGLELKDNQITDLTP--------------- 86
Query: 294 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPK 353
KNLT + + L+ N L N+S I
Sbjct: 87 -----------LKNLTKITELELSGNPLK----------------NVS-----AIAGLQS 114
Query: 354 LQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413
++ LDL+S I P L L +L L L+LNQ++ P L L LQYL + N++
Sbjct: 115 IKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVN 170
Query: 414 SSIPKSIGNLLRLCYLDLSNNQFGH 438
P + NL +L L +N+
Sbjct: 171 DLTP--LANLSKLTTLRADDNKISD 193
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 89/210 (42%), Gaps = 52/210 (24%)
Query: 30 LSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHN 89
L+NL L+L NQ++ + PL+ L LE+ L NV A+
Sbjct: 68 LNNLIGLELKDNQITDLTPLK---------------NLTKITELELSGNPLKNVSAIAG- 111
Query: 90 YFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLY 149
L S+ T+DL+ Q + PL+ LSNL LYL
Sbjct: 112 --------------------------LQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLD 143
Query: 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPIL 209
N + P + L +L L + NQ+ PL+ NLS LT + +N +S P L
Sbjct: 144 LNQITNISP--LAGLTNLQYLSIGNNQVNDLTPLA--NLSKLTTLRADDNKISDISP--L 197
Query: 210 GNLKSLSALGLHINQLSGVIPSSIGNLSSL 239
+L +L + L NQ+S V P + NLS+L
Sbjct: 198 ASLPNLIEVHLKDNQISDVSP--LANLSNL 225
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 15/91 (16%)
Query: 14 LSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH----- 68
L N + I P + L+NLQYL +G+NQ++ + PL +L++L L D N++
Sbjct: 142 LDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTPL--ANLSKLTTLRADDNKISDISPL 197
Query: 69 GSIP------LEIGQLSLINVLALCHNYFVC 93
S+P L+ Q+S ++ LA N F+
Sbjct: 198 ASLPNLIEVHLKDNQISDVSPLANLSNLFIV 228
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIP-SIIGNLKSLLQLDLSENQLIGSIP 182
L NQ + P +L NL +LYL SN G++P + +L L LDL NQL
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 183 LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
F L L + + N L+ LP + L L+ L L NQL + + LSSL
Sbjct: 106 AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164
Query: 243 YLYNNGLYSFVPEEIRYL 260
YL+ N + +I YL
Sbjct: 165 YLFGNP-WDCECRDIMYL 181
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 218 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI 277
L LH NQ++ + P +L +L+ LYL +N L + LT L+ L+L TN L+ V+
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VL 103
Query: 278 PHSI-GNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL 321
P ++ L L L MC N L+ +P+ + LT + + L+QN L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLD 171
V +L L+ +DL NQ + L +L +L++ N + +P I L L L
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141
Query: 172 LSENQLIGSIPL-SFGNLSSLTLMSLFNNSLSGSLPPIL 209
L +NQL SIP +F LSSLT LF N I+
Sbjct: 142 LDQNQL-KSIPHGAFDRLSSLTHAYLFGNPWDCECRDIM 179
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 19/152 (12%)
Query: 12 LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRILYFDVNQLHGS 70
L L N + + P +L NL+ L LGSNQL G +P+ + L QL +L NQL
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 71 IPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFS 130
+L + L +C N +P + L L+ + L QNQ
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT---------------ELPRGIERLTHLTHLALDQNQLK 148
Query: 131 GSIPL-SLGNLSNLDKLYLYSNSFSGSIPSII 161
SIP + LS+L YL+ N + I+
Sbjct: 149 -SIPHGAFDRLSSLTHAYLFGNPWDCECRDIM 179
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 27/129 (20%)
Query: 331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390
GT + + S+P G Q+L L N I P L +L +L L NQL G
Sbjct: 21 GTTVDCRSKRHASVP--AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-G 77
Query: 391 GMPLEL-GSLIELQYLDLSTNKLK-----------------------SSIPKSIGNLLRL 426
+P+ + SL +L LDL TN+L + +P+ I L L
Sbjct: 78 ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHL 137
Query: 427 CYLDLSNNQ 435
+L L NQ
Sbjct: 138 THLALDQNQ 146
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 3 FSSFPHLVHLNLSFNILFGIIPPQI-GNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRIL 60
F S +L L L N L G +P + +L+ L LDLG+NQL+ V+P + L L+ L
Sbjct: 60 FDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL 117
Query: 61 YFDVNQLHGSIPLEIGQLSLINVLALCHN 89
+ N+L +P I +L+ + LAL N
Sbjct: 118 FMCCNKL-TELPRGIERLTHLTHLALDQN 145
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 141 SNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNN 199
S+ +L L SN + L L +L LS+NQ I S+P F L+ LT++ L N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN 86
Query: 200 SLSGSLP-PILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIR 258
L SLP + L L L L NQL V L+SL+ ++L+ N P I
Sbjct: 87 KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-RID 144
Query: 259 YLTSL 263
YL+
Sbjct: 145 YLSRW 149
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 156 SIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPP-ILGNLK 213
S+P+ I + S +L+L N+L S+P F L+ LT +SL N + SLP + L
Sbjct: 21 SVPTGIPS--SATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLT 76
Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEI-RYLTSLSELELCTNH 272
L+ L LH N+L + L+ L+ L L N L S VP+ I LTSL ++ L TN
Sbjct: 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNP 135
Query: 273 LSGVIPH 279
P
Sbjct: 136 WDCSCPR 142
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 189 SSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
SS T + L +N L SLP + L L+ L L NQ+ + L+ L LYL+ N
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 248 GLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPK 303
L S LT L EL L TN L V LT L + + N P+
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
V L L+ + LSQNQ S+P + L+ L LYL+ N + L L +L
Sbjct: 47 VFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105
Query: 171 DLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPPI 208
L NQL S+P F L+SL + L N S P I
Sbjct: 106 ALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL 183
L+ NQ + P +L NL +LY SN + + L L QLDL++N L SIP
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPR 98
Query: 184 -SFGNLSSLTLMSLFNNSLSGSLPPIL 209
+F NL SLT + L+NN I+
Sbjct: 99 GAFDNLKSLTHIYLYNNPWDCECRDIM 125
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 155 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKS 214
S+P+ I K L L+ NQ+ P F +L +L + +N L+ + L
Sbjct: 25 ASVPAGIPTDKQRLWLN--NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYL 260
L+ L L+ N L + + NL SL +YLYNN + +I YL
Sbjct: 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIMYL 127
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLL 288
+P+ I + + L+L NN + P +L +L +L +N L+ + LT L
Sbjct: 27 VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84
Query: 289 LLNMCENHLSGPIPK-SFKNLTSVERVLLNQN 319
L++ +NHL IP+ +F NL S+ + L N
Sbjct: 85 QLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 126 QNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS- 184
QN S+P + ++ +L+L +N + P + +L +L QL + N+L +IP
Sbjct: 20 QNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGV 76
Query: 185 FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHIN 223
F L+ LT + L +N L NLKSL+ + L+ N
Sbjct: 77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 218 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI 277
L L+ NQ++ + P +L +L+ LY +N L + LT L++L+L NHL +
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 278 PHSIGNLTGL 287
+ NL L
Sbjct: 98 RGAFDNLKSL 107
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 355 QVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKS 414
Q L L++N I P L +L +L N N+L+ L +L LDL+ N LK
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK- 94
Query: 415 SIPK-SIGNLLRLCYLDLSNNQF 436
SIP+ + NL L ++ L NN +
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNNPW 117
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 101/232 (43%), Gaps = 35/232 (15%)
Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGN-LKSLLQLDLSE 174
L SL+T++L N+ + + LS L +L+L +N SIPS N + SL +LDL E
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGE 140
Query: 175 NQLIGSI-PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 233
+ + I +F L +L ++L +L P L L L L L N+L + P S
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNLKDI--PNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293
L+SLR L+L + + + L SL EL L N+L +PH +
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDL------------ 245
Query: 294 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIP 345
F L +ERV LN N +V L + + E++P
Sbjct: 246 -----------FTPLHRLERVHLNHNPWHCNCDVLWLSWW------LKETVP 280
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 155 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKS 214
S+P+ I +L L + NQ+ P F +L+ LT ++L N L+ + L
Sbjct: 32 ASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
L+ L LHINQL + NL SL +YL+NN
Sbjct: 90 LTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 126 QNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS- 184
Q + S+P + + + L+LY N + P + +L L L+L+ NQL ++P+
Sbjct: 27 QERSLASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLT-ALPVGV 83
Query: 185 FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGL 220
F L+ LT ++L N L + NLKSL+ + L
Sbjct: 84 FDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYL 119
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 136 SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMS 195
+L L+NL L L N + L +L +L L ENQL F L++LT +
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 196 LFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVP 254
L++N L SLP + L +L+ L L NQL + L+ L+ L L +N L S VP
Sbjct: 140 LYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VP 197
Query: 255 EEI-RYLTSLSELELCTN 271
+ + LTSL+ + L N
Sbjct: 198 DGVFDRLTSLTHIWLLNN 215
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 184 SFGNLSSLTLMSLFNNSLSGSLP-PILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242
+ L++LT + L N L SLP + L +L L L NQL + L++L L
Sbjct: 80 ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIP 302
YLY+N L S LT+L+ L+L N L + LT L L++ +N L
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 303 KSFKNLTSVERVLL 316
F LTS+ + L
Sbjct: 199 GVFDRLTSLTHIWL 212
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLD 171
L L +L+ + L+ NQ L+NL +L L N + L +L L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 172 LSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPP-ILGNLKSLSALGLHINQLSGVI 229
L NQL S+P F L++LT + L NN L SLP + L L L L+ NQL V
Sbjct: 140 LYHNQL-QSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Query: 230 PSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSL 263
L+SL ++L NN + +I YL+
Sbjct: 198 DGVFDRLTSLTHIWLLNNP-WDCACSDILYLSRW 230
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 22/186 (11%)
Query: 27 IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEI-GQLSLINVLA 85
I L N++YL LG N+L + L+ L L L NQL S+P + +L+ + L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 86 LCHNYFVCXXXXXXXXXXXXXXXIPL-VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLD 144
L N +P V L +L+ + L NQ L+NL
Sbjct: 116 LVENQL---------------QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLT 160
Query: 145 KLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSG 203
+L L +N + L L QL L++NQL S+P F L+SLT + L NN
Sbjct: 161 RLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL-KSVPDGVFDRLTSLTHIWLLNNPWDC 219
Query: 204 SLPPIL 209
+ IL
Sbjct: 220 ACSDIL 225
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 3 FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
F +L +L L N L + L+NL LDL +NQL + L QL+ L
Sbjct: 129 FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 63 DVNQLHGSIPLEI-GQLSLINVLALCHNYFVC 93
+ NQL S+P + +L+ + + L +N + C
Sbjct: 189 NDNQLK-SVPDGVFDRLTSLTHIWLLNNPWDC 219
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 372 LGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLD 430
KL +L +L+L NQL L L YL L N+L+S +PK + L L LD
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLD 163
Query: 431 LSNNQ 435
L NNQ
Sbjct: 164 LDNNQ 168
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 144/329 (43%), Gaps = 56/329 (17%)
Query: 3 FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
F+SFPHL L L+ NI+ + P NL NL+ L L SN+L +IPL +
Sbjct: 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGV----------- 99
Query: 63 DVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTM 122
L L+I + ++ +L +Y L NL SL
Sbjct: 100 -FTGLSNLTKLDISENKIVILL----DYMFQD------------------LYNLKSLEVG 136
Query: 123 D-----LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQ 176
D +S FSG L++L++L L + + SIP+ + +L L+ L L
Sbjct: 137 DNDLVYISHRAFSG--------LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187
Query: 177 LIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP--ILG-NLKSLSALGLHINQLSGVIPSSI 233
+ SF L L ++ + + ++ P + G NL SLS H N L+ V ++
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI--THCN-LTAVPYLAV 244
Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293
+L LR L L N + + + L L E++L L+ V P++ L L +LN+
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304
Query: 294 ENHLSGPIPKSFKNLTSVERVLLNQNNLS 322
N L+ F ++ ++E ++L+ N L+
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 123/295 (41%), Gaps = 50/295 (16%)
Query: 170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVI 229
LDL +N++ F + L + L N +S P NL +L LGL N+L +I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95
Query: 230 P----SSIGNLSS---------------------LRALYLYNNGLYSFVPEEIRYLTSLS 264
P + + NL+ L++L + +N L L SL
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 265 ELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK 324
+L L +L+ + ++ +L GL++L + +++ SFK L ++ + ++
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS------- 208
Query: 325 VNVPKLGTFI-----------ISVNNISESIPPEIGDSP--KLQVLDLSSNNIVGEIPVQ 371
+ P L T +S+ + + + P + L+ L+LS N I
Sbjct: 209 -HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267
Query: 372 LGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK---LKSSIPKSIGNL 423
L +L L ++ L QL+ P L L+ L++S N+ L+ S+ S+GNL
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 160 IIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALG 219
+ G L L++L+L NQL G P +F S + + L N + + L L L
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 220 LHINQLSGVIPSSIGNLSSLRALYLYNN 247
L+ NQ+S V+P S +L+SL +L L +N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%)
Query: 3 FSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYF 62
F PHLV L L N L GI P S++Q L LG N++ + L+QL+ L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 63 DVNQLHGSIPLEIGQLSLINVLALCHNYFVC 93
NQ+ +P L+ + L L N F C
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLD 171
+ G L L ++L +NQ +G P + S++ +L L N + L L L+
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 172 LSENQLIGSIPLSFGNLSSLTLMSLFNN 199
L +NQ+ +P SF +L+SLT ++L +N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%)
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+ G L L L L NQL+G+ P++ S ++ L L N + + L L L
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 268 LCTNHLSGVIPHSIGNLTGLLLLNMCEN 295
L N +S V+P S +L L LN+ N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%)
Query: 185 FGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYL 244
FG L L + L N L+G P + L L N++ + L L+ L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 245 YNNGLYSFVPEEIRYLTSLSELELCTN 271
Y+N + +P +L SL+ L L +N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 372 LGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDL 431
G+L L KL L NQL+G P +Q L L NK+K K L +L L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 432 SNNQ 435
+NQ
Sbjct: 110 YDNQ 113
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 143 LDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS 202
L +LYL NS + +P+ I NL +L LDLS N+L S+P G+ L F+N ++
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 203 GSLPPILGNLKSLSALGLHINQLSG-----VIPSSIGNLSSLRALYLYNNGLYSFVPEEI 257
+LP GNL +L LG+ N L + S+ L YL +N +P E
Sbjct: 307 -TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGL----IFYLRDNRPEIPLPHER 361
Query: 258 RYL---------TSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFK 306
R++ L+ T HL+ + + T L +C+++ + PK ++
Sbjct: 362 RFIEINTDGEPQREYDSLQQSTEHLATDL--AKRTFTVLSYNTLCQHYAT---PKMYR 414
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 23 IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLIN 82
+P +I NLSNL+ LDL N+L+ +P E+G QL+ YF + + ++P E G L +
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQ 319
Query: 83 VLAL 86
L +
Sbjct: 320 FLGV 323
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 338 NNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELG 397
N+++E +P EI + L+VLDLS N + +P +LG F L K + + +P E G
Sbjct: 257 NSLTE-LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQL-KYFYFFDNMVTTLPWEFG 313
Query: 398 SLIELQYLDLSTNKLKSSIPK 418
+L LQ+L + N L+ K
Sbjct: 314 NLCNLQFLGVEGNPLEKQFLK 334
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 27/122 (22%)
Query: 109 IPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLL 168
+P + NL++L +DLS N+ + S+P LG+ L Y + N
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN----------------- 303
Query: 169 QLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGV 228
++ ++P FGNL +L + + N L IL KS++ L ++
Sbjct: 304 --------MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE-KSVTGLIFYLRDNRPE 354
Query: 229 IP 230
IP
Sbjct: 355 IP 356
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 350 DSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLST 409
D LDLS+ I I + K L +L LN N L+ +P E+ +L L+ LDLS
Sbjct: 222 DDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSH 279
Query: 410 NKLKSSIPKSIGNLLRLCYLDLSNN 434
N+L +S+P +G+ +L Y +N
Sbjct: 280 NRL-TSLPAELGSCFQLKYFYFFDN 303
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 111/252 (44%), Gaps = 27/252 (10%)
Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGN-LKSLLQLDL-- 172
L SL+T++L N + + LS L +L+L +N SIPS N + SL++LDL
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE 180
Query: 173 -------SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQL 225
SE G L + NL + + N L P++G L L + N
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN------LTPLVG----LEELEMSGNHF 230
Query: 226 SGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGN-L 284
+ P S LSSL+ L++ N+ + L SL EL L N+LS +PH + L
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPL 289
Query: 285 TGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVP--KLGTFIISVNNIS- 341
L+ L++ N + + E + N + G+ + P G +++ V+ S
Sbjct: 290 RYLVELHLHHNPWNCDCDILWLAWWLREYIPTN-STCCGRCHAPMHMRGRYLVEVDQASF 348
Query: 342 ESIPPEIGDSPK 353
+ P I D+P+
Sbjct: 349 QCSAPFIMDAPR 360
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 78/201 (38%), Gaps = 49/201 (24%)
Query: 170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVI 229
L+L EN + +F +L L ++ L NS+ L SL+ L L N L+ VI
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VI 138
Query: 230 PS-SIGNLSSLRALYLYNNGL-----YSF--VPEEIRY---------------------- 259
PS + LS LR L+L NN + Y+F VP +R
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198
Query: 260 ------------------LTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPI 301
L L ELE+ NH + P S L+ L L + + +S
Sbjct: 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258
Query: 302 PKSFKNLTSVERVLLNQNNLS 322
+F L S+ + L NNLS
Sbjct: 259 RNAFDGLASLVELNLAHNNLS 279
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 111/454 (24%), Positives = 192/454 (42%), Gaps = 68/454 (14%)
Query: 1 FAFSSFPHLVHLNLSFNILFGI-IPPQIGNLSNLQYLDLGSNQLSGV-IPLEIGHLNQLR 58
F F+ L +L+LS N L I P + NL++LDL N + I E G+++QL+
Sbjct: 65 FKFNQ--ELEYLDLSHNKLVKISCHPTV----NLKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 59 ILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLN- 117
L L S L I L++ VL + + P L + N
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY-------------GEKEDPEGLQDFNT 165
Query: 118 -SLSTMDLSQNQFSGSIPLSLGNLSNLD----KLYLYSNSFSGSIPSIIGNLKS------ 166
SL + + +F + +S+ ++NL+ K L N S + SI+ L++
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL-SILAKLQTNPKLSN 224
Query: 167 --LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQ 224
L ++ + N I + L + +++ S+ N L G L + + G +
Sbjct: 225 LTLNNIETTWNSFIRILQLVWH--TTVWYFSISNVKLQGQL-----DFRDFDYSGTSLKA 277
Query: 225 LSGVIPSSIGNLSSLRALYLY----NNGLYSFVPEEIRYLTSLS--------ELELCTNH 272
LS I + ++ Y+Y N + +F R + L L+ N
Sbjct: 278 LS--IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335
Query: 273 LSGVIPHSIGNLTGLLLLNMCENHLS--GPIPKSFKNLTSVERVLLNQNNLS-----GKV 325
L+ + + G+LT L L + N L I + + S++++ ++QN++S G
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 326 NVPK-LGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILN 384
+ K L + +S N ++++I + P+++VLDL SN I IP Q+ KL +L +L +
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVA 452
Query: 385 LNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPK 418
NQL L LQ + L TN S P+
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 27/167 (16%)
Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS--GSIPSIIGNLKSLLQLDLSEN---- 175
+D S N + ++ + G+L+ L+ L L N I + +KSL QLD+S+N
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 176 -QLIGSIPLSFG----NLSS--------------LTLMSLFNNSLSGSLPPILGNLKSLS 216
+ G + N+SS + ++ L +N + S+P + L++L
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQ 447
Query: 217 ALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSL 263
L + NQL V L+SL+ ++L+ N P I YL+
Sbjct: 448 ELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-RIDYLSRW 493
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 20/177 (11%)
Query: 35 YLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH--GSIPLEIGQLSLINVLALCHNYFV 92
+LD +N L+ + GHL +L L +NQL I Q+ + L + N
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 93 CXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS 152
SL ++++S N + +I L + L L+SN
Sbjct: 388 YDEKKGDCSWT-------------KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK 432
Query: 153 FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPPI 208
SIP + L++L +L+++ NQL S+P F L+SL + L N S P I
Sbjct: 433 I-KSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 12/163 (7%)
Query: 9 LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLH 68
+HL+ S N+L + G+L+ L+ L L NQL + + + D++Q
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 69 GSIPLEIGQLSLINVL--------ALCHNYFVCX--XXXXXXXXXXXXXXIPLVLGNLNS 118
S + G S L L F C IP + L +
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEA 445
Query: 119 LSTMDLSQNQFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPSI 160
L ++++ NQ S+P + L++L K++L++N + S P I
Sbjct: 446 LQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 14/183 (7%)
Query: 116 LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSEN 175
LN+L ++L NQ + PL NL+ + +L L N S I L+S+ LDL+
Sbjct: 62 LNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 117
Query: 176 QLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGN 235
Q+ PL+ LS+L ++ L N ++ P L L +L L + Q+S + P + N
Sbjct: 118 QITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LAN 171
Query: 236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCEN 295
LS L L +N + P + L +L E+ L N +S V P + N + L ++ +
Sbjct: 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227
Query: 296 HLS 298
++
Sbjct: 228 TIT 230
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLD 171
+ L S+ T+DL+ Q + PL+ LSNL LYL N + P + L +L L
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLS 157
Query: 172 LSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPS 231
+ Q+ PL+ NLS LT + +N +S P L +L +L + L NQ+S V P
Sbjct: 158 IGNAQVSDLTPLA--NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP- 212
Query: 232 SIGNLSSLRALYLYN 246
+ N S+L + L N
Sbjct: 213 -LANTSNLFIVTLTN 226
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 27/178 (15%)
Query: 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQL 67
+ L LS N L + I L +++ LDL S Q++ V PL L+ L++LY D+NQ+
Sbjct: 86 KITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPL--AGLSNLQVLYLDLNQI 141
Query: 68 HGSIPLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQN 127
PL L+ + L++ + P L NL+ L+T+ N
Sbjct: 142 TNISPL--AGLTNLQYLSIGN--------------AQVSDLTP--LANLSKLTTLKADDN 183
Query: 128 QFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSF 185
+ S PL+ +L NL +++L +N S P + N +L + L+ NQ I + P+ +
Sbjct: 184 KISDISPLA--SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQTITNQPVFY 236
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 55/205 (26%)
Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMC 293
+L + L + G+ + E ++YL +L LEL N ++ + P
Sbjct: 38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--------------- 80
Query: 294 ENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPK 353
KNLT + + L+ N L N+S I
Sbjct: 81 -----------LKNLTKITELELSGNPLK----------------NVS-----AIAGLQS 108
Query: 354 LQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413
++ LDL+S I P L L +L L L+LNQ++ P L L LQYL + ++
Sbjct: 109 IKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164
Query: 414 SSIPKSIGNLLRLCYLDLSNNQFGH 438
P + NL +L L +N+
Sbjct: 165 DLTP--LANLSKLTTLKADDNKISD 187
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 132/294 (44%), Gaps = 24/294 (8%)
Query: 125 SQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSIPL 183
+Q+ + G ++L N K+ + NS +P+ ++ + + + L+L++ Q+
Sbjct: 32 TQDVYFGFEDITLNN----QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY 87
Query: 184 SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 243
+F ++ + + N++ P + N+ L+ L L N LS + N L L
Sbjct: 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147
Query: 244 LYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSG-PIP 302
+ NN L + + TSL L+L +N L+ V + + L N+ N LS IP
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIP 204
Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362
+ + L + + N + G VNV +L + NN++++ + + P L +DLS N
Sbjct: 205 IAVEELDASHNSI---NVVRGPVNV-ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYN 258
Query: 363 NIVGEIPVQLGKLFSLNKLILNLNQLSG----GMPLELGSLIELQYLDLSTNKL 412
+ + K+ L +L ++ N+L G P+ L+ LDLS N L
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP-----TLKVLDLSHNHL 307
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Query: 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSG-SIPSIIGNLKSLLQLDLSENQLI 178
+T+D S NQ IP + + +L L +N F+ I L L +++ S N++
Sbjct: 14 TTVDCS-NQKLNKIPEHIPQYT--AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70
Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS 238
+F S + + L +N L + L+SL L L N+++ V S LSS
Sbjct: 71 DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130
Query: 239 LRALYLYNNGLYSFVPEEIRYLTSLSELELCTN 271
+R L LY+N + + P L SLS L L N
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 141/338 (41%), Gaps = 27/338 (7%)
Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
++ ++L+ NQ P + S L L NS S P + L L L+L N+L
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS 238
+F ++LT + L +NS+ N K+L L L N LS + L +
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLEN 146
Query: 239 LRALYLYNNGLYSFVPEEIRYL--TSLSELELCTNHLSGVIP---HSIGNLTGLLLLNMC 293
L+ L L N + + EE+ +L +SL +L+L +N L P +IG L LLL N
Sbjct: 147 LQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQ 206
Query: 294 EN-HLSGPIPKSFKNLTSVERVLLNQNNLSGK-------VNVPKLGTFIISVNNISESIP 345
N HL+ + N TS++ + L N L + L +S NN+ +
Sbjct: 207 LNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGN 265
Query: 346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGS------- 398
P L+ L L NNI P L +L L+L + + L S
Sbjct: 266 GSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLR--YLSLKRAFTKQSVSLASHPNIDDF 323
Query: 399 ----LIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLS 432
L L+YL++ N + S+ + L+ L YL LS
Sbjct: 324 SFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLS 361
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 110/300 (36%), Gaps = 49/300 (16%)
Query: 31 SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNY 90
SN+ L+L NQL + P +QL IL N + P L L+ VL L HN
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHN- 83
Query: 91 FVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYS 150
+LS Q S + NL+ LD L S
Sbjct: 84 --------------------------------ELS--QISDQTFVFCTNLTELD---LMS 106
Query: 151 NSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN----SLSGSLP 206
NS + N K+L++LDLS N L S L G L +L
Sbjct: 107 NSIHKIKSNPFKNQKNLIKLDLSHNGL-SSTKLGTGVQLENLQELLLAKNKILALRSEEL 165
Query: 207 PILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYL---TSL 263
LGN SL L L N L P + L AL L N L + E++ + TS+
Sbjct: 166 EFLGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSI 224
Query: 264 SELELCTNHLSGVIPHSIGNL--TGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL 321
L L N L + L T L L++ N+L SF L S+ + L NN+
Sbjct: 225 QNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG 179
+T+D S + S+P + + + LYLY N + P + L L +LDL NQL
Sbjct: 12 TTVDCSGKSLA-SVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 180 SIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGL 220
F L+ LT +SL +N L NLKSL+ + L
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 155 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKS 214
S+P+ I +L L +NQ+ P F L+ LT + L NN L+ + L
Sbjct: 22 ASVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSL 263
L+ L L+ NQL + + NL SL ++L NN + +I YL+
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP-WDCACSDILYLSRW 127
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSI-GNLTGL 287
+P+ I ++ + LYLY+N + P LT L+ L+L N L+ V+P + LT L
Sbjct: 24 VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQL 80
Query: 288 LLLNMCENHLSGPIPK-SFKNLTSVERVLL 316
L++ +N L IP+ +F NL S+ + L
Sbjct: 81 TQLSLNDNQLKS-IPRGAFDNLKSLTHIWL 109
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL 183
L NQ + P L+ L +L L +N + + L L QL L++NQL SIP
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPR 95
Query: 184 -SFGNLSSLTLMSLFNNSLSGSLPPIL 209
+F NL SLT + L NN + IL
Sbjct: 96 GAFDNLKSLTHIWLLNNPWDCACSDIL 122
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 355 QVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKS 414
QVL L N I P +L L +L L+ NQL+ L +L L L+ N+LK
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 91
Query: 415 SIPK-SIGNLLRLCYLDLSNNQF 436
SIP+ + NL L ++ L NN +
Sbjct: 92 SIPRGAFDNLKSLTHIWLLNNPW 114
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG 179
+T+D S + S+P + + + LYLY N + P + L L +LDL NQL
Sbjct: 20 TTVDCSGKSLA-SVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 180 SIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGL 220
F L+ LT +SL +N L NLKSL+ + L
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 155 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKS 214
S+P+ I +L L +NQ+ P F L+ LT + L NN L+ + L
Sbjct: 30 ASVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSL 263
L+ L L+ NQL + + NL SL ++L NN + +I YL+
Sbjct: 88 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP-WDCACSDILYLSRW 135
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 237 SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSI-GNLTGLLLLNMCEN 295
++ + LYLY+N + P LT L+ L+L N L+ V+P + LT L L++ +N
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 96
Query: 296 HLSGPIPK-SFKNLTSVERVLL 316
L IP+ +F NL S+ + L
Sbjct: 97 QLKS-IPRGAFDNLKSLTHIWL 117
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL 183
L NQ + P L+ L +L L +N + + L L QL L++NQL SIP
Sbjct: 45 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPR 103
Query: 184 -SFGNLSSLTLMSLFNNSLSGSLPPIL 209
+F NL SLT + L NN + IL
Sbjct: 104 GAFDNLKSLTHIWLLNNPWDCACSDIL 130
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 355 QVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKS 414
QVL L N I P +L L +L L+ NQL+ L +L L L+ N+LK
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 99
Query: 415 SIPK-SIGNLLRLCYLDLSNNQF 436
SIP+ + NL L ++ L NN +
Sbjct: 100 SIPRGAFDNLKSLTHIWLLNNPW 122
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 9/205 (4%)
Query: 122 MDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSI 181
++L +NQ S +L +L+ L L N L +L L+L +N+L
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGL-HINQLSGVIPSSIGNLSSLR 240
+F LS L + L NN + + SL L L + +LS + + LS+LR
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188
Query: 241 ALYLYNNGLYSFVPEEIRYLT---SLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHL 297
L L L EI LT L EL+L NHLS + P S L L L M ++ +
Sbjct: 189 YLNLAMCNL-----REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 298 SGPIPKSFKNLTSVERVLLNQNNLS 322
+F NL S+ + L NNL+
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLT 268
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 44/253 (17%)
Query: 31 SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNY 90
+N + L+L NQ+ + HL L IL N + +EIG
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT---IEIG-------------- 106
Query: 91 FVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYS 150
L +L+T++L N+ + + LS L +L+L +
Sbjct: 107 ---------------------AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 151 NSFSGSIPSIIGN-LKSLLQLDLSENQLIGSIPL-SFGNLSSLTLMSLFNNSLSGSLPPI 208
N SIPS N + SL +LDL E + + I +F LS+L ++L +L P
Sbjct: 146 NPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PN 202
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
L L L L L N LS + P S L L+ L++ + + L SL E+ L
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262
Query: 269 CTNHLSGVIPHSI 281
N+L+ ++PH +
Sbjct: 263 AHNNLT-LLPHDL 274
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 36/197 (18%)
Query: 5 SFPHLVHLN---LSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
SF HL HL LS N + I L+NL L+L N+L+ + +L++L+ L+
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142
Query: 62 FDVNQLHGSIP------------LEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXI 109
N + SIP L++G+L ++ ++ +
Sbjct: 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYIS-----------EGAFEGLSNLRYL 190
Query: 110 PLVLGNLN---------SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSI 160
L + NL L +DLS N S P S L +L KL++ + +
Sbjct: 191 NLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250
Query: 161 IGNLKSLLQLDLSENQL 177
NL+SL++++L+ N L
Sbjct: 251 FDNLQSLVEINLAHNNL 267
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIG 179
+T+D S + S+P + + + LYLY N + P + L L +LDL NQL
Sbjct: 12 TTVDCSGKSLA-SVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 180 SIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGL 220
F L+ LT +SL +N L NL+SL+ + L
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWL 109
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 155 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKS 214
S+P+ I +L L +N++ P F L+ LT + L NN L+ + L
Sbjct: 22 ASVPTGIPTTTQVLYL--YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 215 LSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSL 263
L+ L L+ NQL + + NL SL ++L NN + +I YL+
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP-WDCACSDILYLSRW 127
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSI-GNLTGL 287
+P+ I ++ + LYLY+N + P LT L+ L+L N L+ V+P + LT L
Sbjct: 24 VPTGIP--TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQL 80
Query: 288 LLLNMCENHLSGPIPK-SFKNLTSVERVLL 316
L++ +N L IP+ +F NL S+ + L
Sbjct: 81 TQLSLNDNQLKS-IPRGAFDNLRSLTHIWL 109
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 124 LSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPL 183
L N+ + P L+ L +L L +N + + L L QL L++NQL SIP
Sbjct: 37 LYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPR 95
Query: 184 -SFGNLSSLTLMSLFNNSLSGSLPPIL 209
+F NL SLT + L NN + IL
Sbjct: 96 GAFDNLRSLTHIWLLNNPWDCACSDIL 122
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 355 QVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKS 414
QVL L N I P +L L +L L+ NQL+ L +L L L+ N+LK
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 91
Query: 415 SIPK-SIGNLLRLCYLDLSNNQF 436
SIP+ + NL L ++ L NN +
Sbjct: 92 SIPRGAFDNLRSLTHIWLLNNPW 114
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 140/339 (41%), Gaps = 27/339 (7%)
Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
++ ++L+ NQ + S L L + N+ S P + L L L+L N+L
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS 238
+F ++LT + L +NS+ K+L L L N LS + L +
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 239 LRALYLYNNGLYSFVPEEIRYL--TSLSELELCTNHLSGVIP---HSIGNLTGLLLLNM- 292
L+ L L NN + + EE+ +SL +LEL +N + P H+IG L GL L N+
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 293 CENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLG-------TFIISVNNISESIP 345
L+ + N TS+ + L+ + LS N LG +S NN++
Sbjct: 207 LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265
Query: 346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIE---- 401
P+L+ L NNI L LF N LNL + + L SL +
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF--NVRYLNLKRSFTKQSISLASLPKIDDF 323
Query: 402 -------LQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSN 433
L++L++ N + L+ L YL LSN
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 45/203 (22%)
Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
L++++LS NQ + P+ L N+ KL+L N + P + NLK+L L L EN++
Sbjct: 68 LTSLNLSNNQITDISPIQY--LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 123
Query: 179 GSIPLSFG--------------------NLSSLTLMSLFNNSLSGSLPPILGNLKSLSAL 218
L +L L + L NN ++ +L L L L
Sbjct: 124 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTL 181
Query: 219 GLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL-------C-- 269
L NQ+S ++P + L+ L+ LYL N + ++R L L L++ C
Sbjct: 182 SLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDVLELFSQECLN 234
Query: 270 --TNHLSG-VIPHSIGNLTGLLL 289
NH S V+P+++ N G L+
Sbjct: 235 KPINHQSNLVVPNTVKNTDGSLV 257
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 64/170 (37%), Gaps = 42/170 (24%)
Query: 6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVN 65
P+L LNLS N + I P Q L N+ L L N+L+ + PL +L L L+ D N
Sbjct: 65 LPNLTSLNLSNNQITDISPIQY--LPNVTKLFLNGNKLTDIKPL--ANLKNLGWLFLDEN 120
Query: 66 QL------------------HGSIPLEIG--QLSLINVLALCHNYFVCXXXXXXXXXXXX 105
++ H I G L + L L +N
Sbjct: 121 KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT---------- 170
Query: 106 XXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSG 155
VL L L T+ L NQ S +PL+ L+ L LYL N S
Sbjct: 171 ------VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISD 212
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 140/339 (41%), Gaps = 27/339 (7%)
Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
++ ++L+ NQ + S L L + N+ S P + L L L+L N+L
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS 238
+F ++LT + L +NS+ K+L L L N LS + L +
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 151
Query: 239 LRALYLYNNGLYSFVPEEIRYL--TSLSELELCTNHLSGVIP---HSIGNLTGLLLLNM- 292
L+ L L NN + + EE+ +SL +LEL +N + P H+IG L GL L N+
Sbjct: 152 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 211
Query: 293 CENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLG-------TFIISVNNISESIP 345
L+ + N TS+ + L+ + LS N LG +S NN++
Sbjct: 212 LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 270
Query: 346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIE---- 401
P+L+ L NNI L LF N LNL + + L SL +
Sbjct: 271 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF--NVRYLNLKRSFTKQSISLASLPKIDDF 328
Query: 402 -------LQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSN 433
L++L++ N + L+ L YL LSN
Sbjct: 329 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 367
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 140/339 (41%), Gaps = 27/339 (7%)
Query: 119 LSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLI 178
++ ++L+ NQ + S L L + N+ S P + L L L+L N+L
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 179 GSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSS 238
+F ++LT + L +NS+ K+L L L N LS + L +
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 156
Query: 239 LRALYLYNNGLYSFVPEEIRYL--TSLSELELCTNHLSGVIP---HSIGNLTGLLLLNM- 292
L+ L L NN + + EE+ +SL +LEL +N + P H+IG L GL L N+
Sbjct: 157 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 216
Query: 293 CENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLG-------TFIISVNNISESIP 345
L+ + N TS+ + L+ + LS N LG +S NN++
Sbjct: 217 LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 275
Query: 346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIE---- 401
P+L+ L NNI L LF N LNL + + L SL +
Sbjct: 276 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF--NVRYLNLKRSFTKQSISLASLPKIDDF 333
Query: 402 -------LQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSN 433
L++L++ N + L+ L YL LSN
Sbjct: 334 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 372
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 27/223 (12%)
Query: 192 TLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS 251
L+ L NN ++ NLK+L L L N++S + P + L L LYL N L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 252 FVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHL--SGPIPKSFKNLT 309
+PE++ +L EL + N ++ V L ++++ + N L SG +F+ +
Sbjct: 115 -LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 310 SVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIP 369
+ + + N++ I + +PP + + L L N I
Sbjct: 172 KLSYIRIADTNIT----------------TIPQGLPPSLTE------LHLDGNKITKVDA 209
Query: 370 VQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL 412
L L +L KL L+ N +S L + L+ L L+ NKL
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 71/182 (39%), Gaps = 50/182 (27%)
Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE 174
NL +L T+ L N+ S P + L L++LYL N +P + K+L +L + E
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHE 130
Query: 175 NQLIGSIPLSFGNLSSLTLMSLFNNSLSGS-----------------------------L 205
N++ F L+ + ++ L N L S L
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 190
Query: 206 PPIL------GN------------LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
PP L GN L +L+ LGL N +S V S+ N LR L+L NN
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 248 GL 249
L
Sbjct: 251 KL 252
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 15/204 (7%)
Query: 170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVI 229
LDL N++ F NL +L + L NN +S P L L L L NQL +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-L 115
Query: 230 PSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL--SGVIPHSIGNLTGL 287
P + +L+ L ++ N + L + +EL TN L SG+ + + L
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 288 LLLNMCENHLSGPIPKSFK------NLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNIS 341
+ + + +++ IP+ +L + ++ +L G N+ KLG +S N+IS
Sbjct: 174 SYIRIADTNITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG---LSFNSIS 229
Query: 342 ESIPPEIGDSPKLQVLDLSSNNIV 365
+ ++P L+ L L++N +V
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV 253
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 342 ESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIE 401
E +P ++ P +LDL +N I L +L+ LIL N++S P L++
Sbjct: 44 EKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101
Query: 402 LQYLDLSTNKLK---SSIPKSIGNL 423
L+ L LS N+LK +PK++ L
Sbjct: 102 LERLYLSKNQLKELPEKMPKTLQEL 126
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 27/223 (12%)
Query: 192 TLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS 251
L+ L NN ++ NLK+L L L N++S + P + L L LYL N L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 252 FVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHL--SGPIPKSFKNLT 309
+PE++ +L EL + N ++ V L ++++ + N L SG +F+ +
Sbjct: 115 -LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 310 SVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIP 369
+ + + N++ I + +PP + + L L N I
Sbjct: 172 KLSYIRIADTNIT----------------TIPQGLPPSLTE------LHLDGNKITKVDA 209
Query: 370 VQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL 412
L L +L KL L+ N +S L + L+ L L+ NKL
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 71/182 (39%), Gaps = 50/182 (27%)
Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSE 174
NL +L T+ L N+ S P + L L++LYL N +P + K+L +L + E
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHE 130
Query: 175 NQLIGSIPLSFGNLSSLTLMSLFNNSLSGS-----------------------------L 205
N++ F L+ + ++ L N L S L
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 190
Query: 206 PPIL------GN------------LKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247
PP L GN L +L+ LGL N +S V S+ N LR L+L NN
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 248 GL 249
L
Sbjct: 251 KL 252
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 15/204 (7%)
Query: 170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVI 229
LDL N++ F NL +L + L NN +S P L L L L NQL +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-L 115
Query: 230 PSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL--SGVIPHSIGNLTGL 287
P + +L+ L ++ N + L + +EL TN L SG+ + + L
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 288 LLLNMCENHLSGPIPKSFK------NLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNIS 341
+ + + +++ IP+ +L + ++ +L G N+ KLG +S N+IS
Sbjct: 174 SYIRIADTNITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG---LSFNSIS 229
Query: 342 ESIPPEIGDSPKLQVLDLSSNNIV 365
+ ++P L+ L L++N +V
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV 253
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 342 ESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIE 401
E +P ++ P +LDL +N I L +L+ LIL N++S P L++
Sbjct: 44 EKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101
Query: 402 LQYLDLSTNKLK---SSIPKSIGNL 423
L+ L LS N+LK +PK++ L
Sbjct: 102 LERLYLSKNQLKELPEKMPKTLQEL 126
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSI--PSIIGNLKSLLQ 169
NL +L +DL ++ P + L +L +L LY S ++ NLK+L +
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 170 LDLSENQLIGSIPL--SFGNLSSLTLMSLFNNSL----SGSLPPILGNLKSLSALGLHIN 223
LDLS+NQ I S+ L SFG L+SL + +N + L P+ G K+LS L N
Sbjct: 128 LDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAAN 184
Query: 224 QLSGVIPSSIGN 235
L + G
Sbjct: 185 SLYSRVSVDWGK 196
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 108/462 (23%), Positives = 196/462 (42%), Gaps = 49/462 (10%)
Query: 3 FSSFPHLVHLNLSFNILFGI-IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
F + L L+LS N + + + P G L++L+ +D SNQ+ V E+ L + +
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178
Query: 62 FD--VNQLHGSIPLEIGQLS------LINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVL 113
F N L+ + ++ G+ ++ +L + N + L+L
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238
Query: 114 GN------LNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS-IIGNLKS 166
+ + D QN F+G L+ ++ +LD S+ F S+ S + LK
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAG---LARSSVRHLD----LSHGFVFSLNSRVFETLKD 291
Query: 167 LLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLS 226
L L+L+ N++ +F L +L +++L N L L ++ + L N ++
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 227 GVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTG 286
+ + L L+ L L +N L + I ++ S+ ++ L N L +P NLT
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKI--NLTA 403
Query: 287 LLLLNMCENHLSG-PIPKSFKNLTSVERVLLNQNNLSG------KVNVPKLGTFIISVNN 339
L+ ++ EN L I + ++ ++LNQN S P L + N
Sbjct: 404 NLI-HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462
Query: 340 ISESIPPEIGDS-----PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL 394
+ + E+ LQVL L+ N + P L +L L LN N+L+
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522
Query: 395 ELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
+L + +E+ LD+S N+L + P + L LD+++N+F
Sbjct: 523 DLPANLEI--LDISRNQLLAPNPDV---FVSLSVLDITHNKF 559
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE--LGSLIELQYLDLST 409
P L++LDL S+ I P LF L +L L LS + + +L L LDLS
Sbjct: 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132
Query: 410 NKLKS-SIPKSIGNLLRLCYLDLSNNQ 435
N+++S + S G L L +D S+NQ
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQ 159
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 12/114 (10%)
Query: 236 LSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNL-TGLLLLNMCE 294
LS L+ LYL +N L S P +LT+L L L +N L+ V+ H+ +L L +L++
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHN--DLPANLEILDISR 535
Query: 295 NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESI--PP 346
N L P P F +L+ ++ + N + +L TFI +N+ + +I PP
Sbjct: 536 NQLLAPNPDVFVSLSVLD---ITHNKFICEC---ELSTFINWLNHTNVTIAGPP 583
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 237 SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENH 296
S ++ L + +++ + + T L +L L N ++ + ++ LT LL LN+ +N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 297 LSGPIPKSFKNLTSVERVLLNQNNLSG-----KVNVPKLGTFIISVNNISESIPPEIGDS 351
L + F+NL +E + L+ N++ + +P L + N + +S+P I D
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KSVPDGIFDR 393
Query: 352 -PKLQVLDLSSN 362
LQ + L +N
Sbjct: 394 LTSLQKIWLHTN 405
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILY 61
AF HL+ LNLS N L I NL L+ LDL N + + L L+ L
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377
Query: 62 FDVNQLHGSIPLEI-GQLSLINVLALCHNYFVC 93
D NQL S+P I +L+ + + L N + C
Sbjct: 378 LDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 409
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%)
Query: 205 LPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLS 264
L + + L L L N+++ + ++ L+ L L L N L S L L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 265 ELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 319
L+L NH+ + S L L L + N L F LTS++++ L+ N
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 212 LKSLSALGLHINQLS-----GVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSEL 266
K L A G+ LS ++ S + + L L L N + LT L +L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 267 ELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322
L N L + NL L +L++ NH+ +SF L +++ + L+ N L
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 277 IPHSIGNLTGLLLLNMCENHLSG-PIPKSFKNLTSVERVLLNQNNL-----SGKVNVPKL 330
+P S+ + T LL ++ N+LS + LT++ +LL+ N+L V VP L
Sbjct: 33 VPQSLPSYTALL--DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 331 GTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSG 390
+S N++ D L+VL L +N+IV + L KL L+ NQ+S
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150
Query: 391 GMPLEL----GSLIELQYLDLSTNKLKS 414
P+EL L +L LDLS+NKLK
Sbjct: 151 -FPVELIKDGNKLPKLMLLDLSSNKLKK 177
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 205 LPPILGNLKSLSAL-GLHINQLSGVIPSSI-GNLSSLRALYLYNNGLYSFVPEEIRYLTS 262
LP + +L S +AL L N LS + L++L +L L +N L E + +
Sbjct: 30 LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 263 LSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322
L L+L +NHL + +L L +L + NH+ +F+++ ++++ L+QN +S
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 323 G-KVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNI 364
V + K G + PKL +LDLSSN +
Sbjct: 150 RFPVELIKDGNKL-----------------PKLMLLDLSSNKL 175
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 132/294 (44%), Gaps = 24/294 (8%)
Query: 125 SQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSIPL 183
+Q+ + G ++L N K+ + NS +P+ ++ + + + L+L++ Q+
Sbjct: 38 TQDVYFGFEDITLNN----QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY 93
Query: 184 SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 243
+F ++ + + N++ P + N+ L+ L L N LS + N L L
Sbjct: 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153
Query: 244 LYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSG-PIP 302
+ NN L + + TSL L+L +N L+ V + + L N+ N LS IP
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIP 210
Query: 303 KSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362
+ + L + + N + G VNV +L + NN++++ + + P L +DLS N
Sbjct: 211 IAVEELDASHNSI---NVVRGPVNV-ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYN 264
Query: 363 NIVGEIPVQLGKLFSLNKLILNLNQLSG----GMPLELGSLIELQYLDLSTNKL 412
+ + K+ L +L ++ N+L G P+ L+ LDLS N L
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-----LKVLDLSHNHL 313
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 148 LYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP 207
LY+ S + +P +L + +L++ Q+ G++P+ L + L +N L SLP
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+ L +L+ L + N+L+ + ++ L L+ LYL N L + P + L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 305
L N L+ + + L L L + EN L IPK F
Sbjct: 155 LANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 109 IPLVLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
+PL+ L +L+ +D+S N+ + S+PL +L L L +LYL N P ++ L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 168 LQLDLSENQL 177
+L L+ NQL
Sbjct: 151 EKLSLANNQL 160
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLIELQYLDL 407
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 408 STNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
N+LK+ P + +L L L+NNQ
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 148 LYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP 207
LY+ S + +P +L + +L++ Q+ G++P+ L + L +N L SLP
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+ L +L+ L + N+L+ + ++ L L+ LYL N L + P + L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 305
L N L+ + + L L L + EN L IPK F
Sbjct: 155 LANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 109 IPLVLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
+PL+ L +L+ +D+S N+ + S+PL +L L L +LYL N P ++ L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 168 LQLDLSENQLI 178
+L L+ NQL
Sbjct: 151 EKLSLANNQLT 161
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLIELQYLDL 407
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 408 STNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
N+LK+ P + +L L L+NNQ
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 148 LYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP 207
LY+ S + +P +L + +L++ Q+ G++P+ L + L +N L SLP
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+ L +L+ L + N+L+ + ++ L L+ LYL N L + P + L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 305
L N L+ + + L L L + EN L IPK F
Sbjct: 155 LANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 109 IPLVLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
+PL+ L +L+ +D+S N+ + S+PL +L L L +LYL N P ++ L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 168 LQLDLSENQLI 178
+L L+ NQL
Sbjct: 151 EKLSLANNQLT 161
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLIELQYLDL 407
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 408 STNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
N+LK+ P + +L L L+NNQ
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 148 LYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP 207
LY+ S + +P +L + +L++ Q+ G++P+ L + L +N L SLP
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+ L +L+ L + N+L+ + ++ L L+ LYL N L + P + L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 305
L N L+ + + L L L + EN L IPK F
Sbjct: 155 LANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 109 IPLVLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
+PL+ L +L+ +D+S N+ + S+PL +L L L +LYL N P ++ L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 168 LQLDLSENQL 177
+L L+ NQL
Sbjct: 151 EKLSLANNQL 160
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL-ELGSLIELQYLDL 407
G P L LDLS N + +P+ L +L L ++ N+L+ +PL L L ELQ L L
Sbjct: 74 GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 408 STNKLKSSIPKSIGNLLRLCYLDLSNNQF 436
N+LK+ P + +L L L+NNQ
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 9/158 (5%)
Query: 148 LYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP 207
LY+ S + +P +L + +L++ Q+ G++P+ L + L +N L SLP
Sbjct: 44 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 95
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+ L +L+ L + N+L+ + ++ L L+ LYL N L + P + L +L
Sbjct: 96 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 155
Query: 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 305
L N+L+ + + L L L + EN L IPK F
Sbjct: 156 LANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 192
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 109 IPLVLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
+PL+ L +L+ +D+S N+ + S+PL +L L L +LYL N P ++ L
Sbjct: 93 LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 168 LQLDLSENQLI 178
+L L+ N L
Sbjct: 152 EKLSLANNNLT 162
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
N L L L ++ + + L L L L N + SF P LTSL L
Sbjct: 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHL-SGPIPKSFKNLTSVERVLLNQN 319
L+ + IG L L LN+ N + S +P F NLT++ V L+ N
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 117/441 (26%), Positives = 176/441 (39%), Gaps = 65/441 (14%)
Query: 12 LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI 71
++LSFN L + N S LQ+LDL ++ + L+ L L N +
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 72 PLEI-GQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQF- 129
P G SL N++A+ P +G L +L ++++ N
Sbjct: 97 PGSFSGLTSLENLVAV-------------ETKLASLESFP--IGQLITLKKLNVAHNFIH 141
Query: 130 SGSIPLSLGNLSNL---DKLYLYSNSFS-GSIPSIIGNLKSLLQLDLSEN--QLIGSIPL 183
S +P NL+NL D Y Y + + + + N + L LD+S N I
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201
Query: 184 SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 243
L LTL FN+ S + L NL GLH+++L +G R L
Sbjct: 202 QGIKLHELTLRGNFNS--SNIMKTCLQNLA-----GLHVHRL------ILGEFKDERNLE 248
Query: 244 LYN----NGLYSFVPEEIRYLTSLSELELCTNHLSGVIP--HSIGNLTGLLLLNMCENHL 297
++ GL +E R LT TN S I H + N++ + L + +L
Sbjct: 249 IFEPSIMEGLCDVTIDEFR-LTY-------TNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300
Query: 298 SGPIPKSFKNLT-SVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQV 356
+PK FK + S+ R L Q +++P L + +++N SI + P L
Sbjct: 301 ED-VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMN--KGSISFKKVALPSLSY 354
Query: 357 LDLSSNNIVGEIPVQLGKL--FSLNKLILNLNQLSGG--MPLELGSLIELQYLDLSTNKL 412
LDLS N + L SL L L+ N G M L ELQ+LD + L
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---GAIIMSANFMGLEELQHLDFQHSTL 411
Query: 413 KSSIPKSIG-NLLRLCYLDLS 432
K S +L +L YLD+S
Sbjct: 412 KRVTEFSAFLSLEKLLYLDIS 432
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 209 LGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268
N L L L ++ + + L L L L N + SF P LTSL L
Sbjct: 47 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 106
Query: 269 CTNHLSGVIPHSIGNLTGLLLLNMCENHL-SGPIPKSFKNLTSVERVLLNQN 319
L+ + IG L L LN+ N + S +P F NLT++ V L+ N
Sbjct: 107 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 117/441 (26%), Positives = 176/441 (39%), Gaps = 65/441 (14%)
Query: 12 LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI 71
++LSFN L + N S LQ+LDL ++ + L+ L L N +
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 72 PLEI-GQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQF- 129
P G SL N++A+ P +G L +L ++++ N
Sbjct: 92 PGSFSGLTSLENLVAV-------------ETKLASLESFP--IGQLITLKKLNVAHNFIH 136
Query: 130 SGSIPLSLGNLSNL---DKLYLYSNSFS-GSIPSIIGNLKSLLQLDLSEN--QLIGSIPL 183
S +P NL+NL D Y Y + + + + N + L LD+S N I
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 196
Query: 184 SFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALY 243
L LTL FN+ S + L NL GLH+++L +G R L
Sbjct: 197 QGIKLHELTLRGNFNS--SNIMKTCLQNLA-----GLHVHRL------ILGEFKDERNLE 243
Query: 244 LYN----NGLYSFVPEEIRYLTSLSELELCTNHLSGVIP--HSIGNLTGLLLLNMCENHL 297
++ GL +E R LT TN S I H + N++ + L + +L
Sbjct: 244 IFEPSIMEGLCDVTIDEFR-LTY-------TNDFSDDIVKFHCLANVSAMSLAGVSIKYL 295
Query: 298 SGPIPKSFKNLT-SVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQV 356
+PK FK + S+ R L Q +++P L + +++N SI + P L
Sbjct: 296 ED-VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMN--KGSISFKKVALPSLSY 349
Query: 357 LDLSSNNIVGEIPVQLGKL--FSLNKLILNLNQLSGG--MPLELGSLIELQYLDLSTNKL 412
LDLS N + L SL L L+ N G M L ELQ+LD + L
Sbjct: 350 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---GAIIMSANFMGLEELQHLDFQHSTL 406
Query: 413 KSSIPKSIG-NLLRLCYLDLS 432
K S +L +L YLD+S
Sbjct: 407 KRVTEFSAFLSLEKLLYLDIS 427
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 9/158 (5%)
Query: 148 LYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP 207
LY+ S + +P +L + +L++ Q+ G++P+ L + L +N L SLP
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+ L +L+ L + N+L+ + ++ L L+ LYL N L + P + L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 305
L N+L+ + + L L L + EN L IPK F
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 109 IPLVLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
+PL+ L +L+ +D+S N+ + S+PL +L L L +LYL N P ++ L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 168 LQLDLSENQLI 178
+L L+ N L
Sbjct: 151 EKLSLANNNLT 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 9/158 (5%)
Query: 148 LYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP 207
LY+ S + +P +L + +L++ Q+ G++P+ L + L +N L SLP
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+ L +L+ L + N+L+ + ++ L L+ LYL N L + P + L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 305
L N+L+ + + L L L + EN L IPK F
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 109 IPLVLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
+PL+ L +L+ +D+S N+ + S+PL +L L L +LYL N P ++ L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 168 LQLDLSENQLI 178
+L L+ N L
Sbjct: 151 EKLSLANNNLT 161
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 9/158 (5%)
Query: 148 LYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP 207
LY+ S + +P +L + +L++ Q+ G++P+ L + L +N L SLP
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+ L +L+ L + N+L+ + ++ L L+ LYL N L + P + L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 305
L N+L+ + + L L L + EN L IPK F
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 109 IPLVLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
+PL+ L +L+ +D+S N+ + S+PL +L L L +LYL N P ++ L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 168 LQLDLSENQLI 178
+L L+ N L
Sbjct: 151 EKLSLANNNLT 161
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 148 LYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP 207
LY+ S + +P +L + +L++ Q+ G++P+ L + L +N L SLP
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+ L +L+ L + N+L+ + ++ L L+ LYL N L + P + L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 305
L N L+ + + L L L + EN L IPK F
Sbjct: 155 LANNDLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 109 IPLVLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
+PL+ L +L+ +D+S N+ + S+PL +L L L +LYL N P ++ L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 168 LQLDLSENQLI 178
+L L+ N L
Sbjct: 151 EKLSLANNDLT 161
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 9/158 (5%)
Query: 148 LYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPP 207
LY+ S + +P +L + +L++ Q+ G++P+ L + L +N L SLP
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPL 94
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+ L +L+ L + N+L+ + ++ L L+ LYL N L + P + L +L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 268 LCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSF 305
L N+L+ + + L L L + EN L IPK F
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 109 IPLVLGNLNSLSTMDLSQNQFSGSIPL-SLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167
+PL+ L +L+ +D+S N+ + S+PL +L L L +LYL N P ++ L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 168 LQLDLSENQLI 178
+L L+ N L
Sbjct: 151 EKLSLANNNLT 161
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 37/179 (20%)
Query: 140 LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG------------- 186
L N+ KL+L N + P + NLK+L L L EN++ L
Sbjct: 65 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 122
Query: 187 -------NLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 239
+L L + L NN ++ +L L L L L NQ+ ++P + L+ L
Sbjct: 123 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVP--LARLTKL 178
Query: 240 RALYLYNNGLYSFVPEEIRYLTSLSELELCT--------NHLSG-VIPHSIGNLTGLLL 289
+ LYL N + +R L +L LEL + NH S V+P+++ N G L+
Sbjct: 179 QNLYLSKNHISDL--RALRGLKNLDVLELFSQEALNKPINHQSNLVVPNTVKNTDGSLV 235
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSL-GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQL 170
+L ++ +LS ++L N +P L +L NL+ + SN I G + L QL
Sbjct: 142 LLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQL 199
Query: 171 DLSENQLIGSIPLS-FGNLSSLTLMSLFNNSLSGSLPPI 208
+L+ NQL S+P F L+SL + L N S P I
Sbjct: 200 NLASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 237
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 137 LGNLSNLDKLYLYSNSFSGSIPS-IIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMS 195
L ++ NL L L +N +PS + +L++L ++ N+L FG + L ++
Sbjct: 143 LTDMRNLSHLELRANI--EEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLN 200
Query: 196 LFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPS 231
L +N L I L SL + LH N P
Sbjct: 201 LASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 43/182 (23%)
Query: 140 LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG------------- 186
L N+ KL+L N + P + NLK+L L L EN++ L
Sbjct: 65 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 122
Query: 187 -------NLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 239
+L L + L NN ++ +L L L L L NQ+S ++P + L+ L
Sbjct: 123 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 178
Query: 240 RALYLYNNGLYSFVPEEIRYLTSLSELEL-------C----TNHLSG-VIPHSIGNLTGL 287
+ LYL N + ++R L L L++ C NH S V+P+++ N G
Sbjct: 179 QNLYLSKNHI-----SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 233
Query: 288 LL 289
L+
Sbjct: 234 LV 235
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS 154
VL L L T+ L NQ S +PL+ L+ L LYL N S
Sbjct: 149 VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS 189
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 22/185 (11%)
Query: 111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYS------NSFSG--------- 155
L LG + D+S F G +S+ ++ NL K Y ++ + FSG
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESI-NLQKHYFFNISSNTFHCFSGLQELDLTAT 288
Query: 156 ---SIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSL-PPILGN 211
+PS + L +L +L LS N+ +S N SLT +S+ N+ L L N
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348
Query: 212 LKSLSALGLHIN--QLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELC 269
L++L L L + + S + NLS L++L L N S E + L L+L
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408
Query: 270 TNHLS 274
L
Sbjct: 409 FTRLK 413
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 43/182 (23%)
Query: 140 LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG------------- 186
L N+ KL+L N + P + NLK+L L L EN++ L
Sbjct: 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124
Query: 187 -------NLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 239
+L L + L NN ++ +L L L L L NQ+S ++P + L+ L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 180
Query: 240 RALYLYNNGLYSFVPEEIRYLTSLSELEL-------C----TNHLSG-VIPHSIGNLTGL 287
+ LYL N + ++R L L L++ C NH S V+P+++ N G
Sbjct: 181 QNLYLSKNHI-----SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235
Query: 288 LL 289
L+
Sbjct: 236 LV 237
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS 154
VL L L T+ L NQ S +PL+ L+ L LYL N S
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS 191
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 2/140 (1%)
Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSG-SIPSIIGNLKSLLQLDLS 173
+L SL +DLS N S G LS+L L L N + + S+ NL +L L +
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 174 ENQLIGSIP-LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSS 232
+ I + F L+SL + + SL L +++ + L LH+++ + ++
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191
Query: 233 IGNLSSLRALYLYNNGLYSF 252
LSS+R L L + L F
Sbjct: 192 ADILSSVRYLELRDTNLARF 211
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL 177
++ ++DLS N+ + L +NL L L S+ + +L SL LDLS+N L
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 178 IGSIPLSFGNLSSLTLMSLFNNSLS----GSLPPILGNLKSLSALGLHINQLSGVIPSSI 233
FG LSSL ++L N SL P L NL++L +G ++ S +
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL-RIG-NVETFSEIRRIDF 144
Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274
L+SL L + L ++ + ++ + + L L HLS
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL---HLS 182
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSN--QLSGVIPL--EIGHLNQL 57
AF S L HL+LS N L + G LS+L+YL+L N Q GV L + +L L
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
Query: 58 RI 59
RI
Sbjct: 129 RI 130
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 2/140 (1%)
Query: 115 NLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSG-SIPSIIGNLKSLLQLDLS 173
+L SL +DLS N S G LS+L L L N + + S+ NL +L L +
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 157
Query: 174 ENQLIGSIP-LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSS 232
+ I + F L+SL + + SL L +++ + L LH+++ + ++
Sbjct: 158 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 217
Query: 233 IGNLSSLRALYLYNNGLYSF 252
LSS+R L L + L F
Sbjct: 218 ADILSSVRYLELRDTNLARF 237
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL 177
++ ++DLS N+ + L +NL L L S+ + +L SL LDLS+N L
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 112
Query: 178 IGSIPLSFGNLSSLTLMSLFNNSLS----GSLPPILGNLKSLSALGLHINQLSGVIPSSI 233
FG LSSL ++L N SL P L NL++L +G ++ S +
Sbjct: 113 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL-RIG-NVETFSEIRRIDF 170
Query: 234 GNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS 274
L+SL L + L ++ + ++ + + L L HLS
Sbjct: 171 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL---HLS 208
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSN--QLSGVIPL--EIGHLNQL 57
AF S L HL+LS N L + G LS+L+YL+L N Q GV L + +L L
Sbjct: 95 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 154
Query: 58 RI 59
RI
Sbjct: 155 RI 156
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%)
Query: 143 LDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS 202
+ ++ L N+ P K L ++DLS NQ+ P +F L SL + L+ N ++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 203 GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTS 262
+ L SL L L+ N+++ + + +L +L L LY+N L + L +
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 263 LSELELCTN 271
+ + L N
Sbjct: 154 IQTMHLAQN 162
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%)
Query: 110 PLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQ 169
P L +DLS NQ S P + L +L+ L LY N + S+ L SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHIN 223
L L+ N++ +F +L +L L+SL++N L L+++ + L N
Sbjct: 109 LLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%)
Query: 189 SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG 248
++T + L N++ P K L + L NQ+S + P + L SL +L LY N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 249 LYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNL 308
+ L SL L L N ++ + + +L L LL++ +N L +F L
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 309 TSVERVLLNQN 319
+++ + L QN
Sbjct: 152 RAIQTMHLAQN 162
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%)
Query: 143 LDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS 202
+ ++ L N+ P K L ++DLS NQ+ P +F L SL + L+ N ++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 203 GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTS 262
+ L SL L L+ N+++ + + +L +L L LY+N L + L +
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 263 LSELELCTN 271
+ + L N
Sbjct: 154 IQTMHLAQN 162
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%)
Query: 110 PLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQ 169
P L +DLS NQ S P + L +L+ L LY N + S+ L SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 170 LDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHIN 223
L L+ N++ +F +L +L L+SL++N L L+++ + L N
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%)
Query: 189 SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNG 248
++T + L N++ P K L + L NQ+S + P + L SL +L LY N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 249 LYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNL 308
+ L SL L L N ++ + + +L L LL++ +N L +F L
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 309 TSVERVLLNQN 319
+++ + L QN
Sbjct: 152 RAIQTMHLAQN 162
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 325 VNVPKLGTFIISVNNISESIPP-EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLIL 383
N+P+ T I N + IPP KL+ +DLS+N I P L SLN L+L
Sbjct: 28 TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87
Query: 384 NLNQLS 389
N+++
Sbjct: 88 YGNKIT 93
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 43/182 (23%)
Query: 140 LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG------------- 186
L N+ KL+L N + P + NLK+L L L EN++ L
Sbjct: 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124
Query: 187 -------NLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 239
+L L + L NN ++ +L L L L L NQ+S ++P + L+ L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 180
Query: 240 RALYLYNNGLYSFVPEEIRYLTSLSELEL-------C----TNHLSG-VIPHSIGNLTGL 287
+ LYL N + ++R L L L++ C NH S V+P+++ N G
Sbjct: 181 QNLYLSKNHI-----SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235
Query: 288 LL 289
L+
Sbjct: 236 LV 237
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 43/182 (23%)
Query: 140 LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG------------- 186
L N+ KL+L N + P + NLK+L L L EN++ L
Sbjct: 62 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 119
Query: 187 -------NLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSL 239
+L L + L NN ++ +L L L L L NQ+S ++P + L+ L
Sbjct: 120 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LACLTKL 175
Query: 240 RALYLYNNGLYSFVPEEIRYLTSLSELELCT-----------NHLSG-VIPHSIGNLTGL 287
+ LYL N + ++R L L L++ NH S V+P+++ N G
Sbjct: 176 QNLYLSKNHI-----SDLRALCGLKNLDVLELFSQEALNKPINHQSNLVVPNTVKNTDGS 230
Query: 288 LL 289
L+
Sbjct: 231 LV 232
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSG 155
VL L L T+ L NQ S +PL+ L+ L LYL N S
Sbjct: 146 VLSRLTKLDTLSLEDNQISDIVPLAC--LTKLQNLYLSKNHISD 187
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 192 TLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL-----YLYN 246
TL+S + + S + L++ A GL I +G + I NLS L+ Y+
Sbjct: 12 TLVSFETHRIPSST---IEALEAAHAKGLKIFIATGRPKAIINNLSELQDRNLIDGYITM 68
Query: 247 NGLYSFVPEEIRYLTSLSELEL 268
NG Y FV EE+ Y +++ + E+
Sbjct: 69 NGAYCFVGEEVIYKSAIPQEEV 90
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 192 TLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL-----YLYN 246
TL+S + + S + L++ A GL I +G + I NLS L+ Y+
Sbjct: 12 TLVSFETHRIPSST---IEALEAAHAKGLKIFIATGRPKAIINNLSELQDRNLIDGYITM 68
Query: 247 NGLYSFVPEEIRYLTSLSELEL 268
NG Y FV EE+ Y +++ + E+
Sbjct: 69 NGAYCFVGEEVIYKSAIPQEEV 90
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 19/94 (20%)
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+L L L L L NQ+S ++P + L+ L+ LYL N + ++R L L L+
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLD 200
Query: 268 L-------C----TNHLSG-VIPHSIGNLTGLLL 289
+ C NH S V+P+++ N G L+
Sbjct: 201 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Query: 114 GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS 173
G ++ ++DLS N+ + L NL L L SN + +L SL LDLS
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPILGNLKSLSALGL-HINQLSGVIPS 231
N L F LSSLT ++L N + +L L L + +++ + +
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 142
Query: 232 SIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSEL 266
L+ L L + + L S+ P+ ++ + ++S L
Sbjct: 143 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 177
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 202 SGSLPPILGNL-KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYL 260
SGSL I L +++ +L L N+++ + S + +L+AL L +NG+ + + L
Sbjct: 14 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 73
Query: 261 TSLSELELCTNHLSGVIPHSIGNLTGLLLLNM 292
SL L+L N+LS + L+ L LN+
Sbjct: 74 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 105
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 347 EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLD 406
++ +L LD S N I E+ V KL LN+L + N ++ L+L I+L +LD
Sbjct: 165 DVTPQTQLTTLDCSFNKIT-ELDVSQNKL--LNRLNCDTNNITK---LDLNQNIQLTFLD 218
Query: 407 LSTNKLKSSIPKSIGNLLRLCYLDLSNN 434
S+NKL + L +L Y D S N
Sbjct: 219 CSSNKLTEI---DVTPLTQLTYFDCSVN 243
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 112/451 (24%), Positives = 173/451 (38%), Gaps = 72/451 (15%)
Query: 12 LNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSI 71
L SFN L I L NL +LDL Q++ + +QL L N L
Sbjct: 35 LEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPL---- 90
Query: 72 PLEIGQLSLINVLALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSG 131
+ + + SL +L H + + IP + NL +L ++ L N S
Sbjct: 91 -IFMAETSLNGPKSLKHLFLI-------QTGISNLEFIP--VHNLENLESLYLGSNHISS 140
Query: 132 -SIPLSL--GNLSNLD----KLYLYSNSFSGSIPSII-------GNLKSLLQLDLSENQL 177
P NL LD ++ S S+ I GN ++L ++ +
Sbjct: 141 IKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTI 200
Query: 178 IGSIPLSFGNLSSLTLMSLFN---NSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIG 234
S L+FG +L++ +FN NS + SL LG + + + L G+ S+
Sbjct: 201 FQS--LNFGGTPNLSV--IFNGLQNSTTQSL--WLGTFEDIDDEDISSAMLKGLCEMSV- 253
Query: 235 NLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCE 294
+L L + + T L EL+L HL G +P + L L L +
Sbjct: 254 -----ESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSV 307
Query: 295 NHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKL 354
NH S N S+ + + + NV KL ++ ++G+ L
Sbjct: 308 NHFDQLCQISAANFPSLTHLYI-------RGNVKKL--------HLGVGCLEKLGN---L 349
Query: 355 QVLDLSSNNIVGE--IPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL 412
Q LDLS N+I +QL L L L L+ N+ G +L+ LDL+ +L
Sbjct: 350 QTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRL 409
Query: 413 KSSIPKS-IGNL-------LRLCYLDLSNNQ 435
+ P+S NL L C+LD SN
Sbjct: 410 HINAPQSPFQNLHFLQVLNLTYCFLDTSNQH 440
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 109 IPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS-----GSIPSIIGN 163
+P + LN L + LS N F +S N +L LY+ N G + +GN
Sbjct: 290 LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEK-LGN 348
Query: 164 LKSLLQLDLSENQLIGS--IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH 221
L++ LDLS N + S L NLS L ++L +N G L L L
Sbjct: 349 LQT---LDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Query: 222 INQLSGVIPSS-IGNLSSLRALYLYNNGLYSFVPEEIRYLTS----LSELELCTNHL-SG 275
+L P S NL L+ L L Y F+ ++L + L L L NH G
Sbjct: 406 FTRLHINAPQSPFQNLHFLQVLNLT----YCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
Query: 276 VIP-----HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS 322
I ++G+L +L+L+ C L ++F +L + V L+ N+L+
Sbjct: 462 TITKTNLLQTVGSLE-VLILSSCG--LLSIDQQAFHSLGKMSHVDLSHNSLT 510
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 202 SGSLPPILGNL-KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYL 260
SGSL I L +++ +L L N+++ + S + +L+AL L +NG+ + + L
Sbjct: 40 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99
Query: 261 TSLSELELCTNHLSGVIPHSIGNLTGLLLLNM 292
SL L+L N+LS + L+ L LN+
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Query: 114 GNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLS 173
G ++ ++DLS N+ + L NL L L SN + +L SL LDLS
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 174 ENQLIGSIPLSFGNLSSLTLMSLFNNSLSG-SLPPILGNLKSLSALGL-HINQLSGVIPS 231
N L F LSSLT ++L N + +L L L + +++ + +
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 232 SIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSEL 266
L+ L L + + L S+ P+ ++ + ++S L
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 26/209 (12%)
Query: 177 LIGSIP-LSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSS-IG 234
L+G++ L++ L LTL L ++G++PP+ L+ L + +S S +
Sbjct: 81 LVGALRVLAYSRLKELTLEDL---KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA 137
Query: 235 NLSS-----LRALYLYNNGLYSFVPEEIRYLTSLSELELCTNH-------LSGVIPHSIG 282
L L+ L + +F E++R +L+ L+L N ++ + PH
Sbjct: 138 ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP 197
Query: 283 NLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN--VPK-LGTFIISVNN 339
+ L L N +G + L+ N+L VN P+ + + ++ N
Sbjct: 198 AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN 257
Query: 340 IS----ESIPPEIGDSPKLQVLDLSSNNI 364
+S E +P G KL+VLDLSSN +
Sbjct: 258 LSFAGLEQVP--KGLPAKLRVLDLSSNRL 284
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 14/211 (6%)
Query: 229 IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGL- 287
P LS L+ + GL P+ + L L L N L +P SI +L L
Sbjct: 96 FPDQAFRLSHLQHXTIDAAGLXEL-PDTXQQFAGLETLTLARNPLRA-LPASIASLNRLR 153
Query: 288 -LLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLS-GKVNVPKLGTFIISVNNISE--- 342
L + C P P + + + + L+N +L + L I ++ N+
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI 213
Query: 343 ------SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLEL 396
++ P I PKL+ LDL + P G L +LIL +PL++
Sbjct: 214 RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273
Query: 397 GSLIELQYLDLSTNKLKSSIPKSIGNLLRLC 427
L +L+ LDL S +P I L C
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 128 QFSG--SIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSF 185
+++G S+P S+ NL NL L + ++ S P+ I +L L +LDL + + P F
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIF 249
Query: 186 GNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLH 221
G + L + L + S +LP + L L L L
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 104/246 (42%), Gaps = 31/246 (12%)
Query: 192 TLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS 251
TL+ L NN +S L+ L AL L N++S + + L L+ LY+ N L
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116
Query: 252 FVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHL--SGPIPKSFKNLT 309
P +SL EL + N + V L + + M N L SG P +F L
Sbjct: 117 IPPN---LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172
Query: 310 SVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIP 369
+ + +++ L+G +PK ++ E++ D K+Q ++L
Sbjct: 173 KLNYLRISEAKLTG---IPK---------DLPETLNELHLDHNKIQAIELED-------- 212
Query: 370 VQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN--LLRLC 427
L + L +L L NQ+ L L L+ L L NKL S +P + + LL++
Sbjct: 213 --LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVV 269
Query: 428 YLDLSN 433
YL +N
Sbjct: 270 YLHTNN 275
>pdb|3U44|B Chain B, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|B Chain B, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1166
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 213 KSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSL 263
KSL+ LH ++ I ++ ++Y +G Y F P+E R L L
Sbjct: 174 KSLADQYLHSEDYLTLLAEHIPLAEDIKGAHIYVDGFYQFTPQEFRVLEQL 224
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 9 LVHLNLSFNILFGI-IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQL 57
L LN++ N++ +P NL+NL++LDL SN++ + ++ L+Q+
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
L L L ++ + + +LS L L L N + S L+SL +L +L
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNL 114
Query: 274 SGVIPHSIGNLTGLLLLNMCENHL-SGPIPKSFKNLTSVERVLLNQNNL 321
+ + IG+L L LN+ N + S +P+ F NLT++E + L+ N +
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 9 LVHLNLSFNILFGI-IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQL 57
L LN++ N++ +P NL+NL++LDL SN++ + ++ L+Q+
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
L L L ++ + + +LS L L L N + S L+SL +L +L
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 114
Query: 274 SGVIPHSIGNLTGLLLLNMCENHL-SGPIPKSFKNLTSVERVLLNQNNL 321
+ + IG+L L LN+ N + S +P+ F NLT++E + L+ N +
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQL 177
SL+ +D+S+N FSG LS L Y N+ S I S+ SL +L++S N+L
Sbjct: 278 SLTFLDVSENIFSG--------LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329
Query: 178 IGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNL- 236
I +P L L++ FN+ +P + NLK L + + IP S+ +L
Sbjct: 330 I-ELPALPPRLER--LIASFNH--LAEVPELPQNLKQLHVEYNPLREFPD-IPESVEDLR 383
Query: 237 ------------SSLRALYLYNNGLYSF--VPEEIRYLTSLSE 265
+L+ L++ N L F +PE + L SE
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSE 426
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 9 LVHLNLSFNILFGI-IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQL 57
L LN++ N++ +P NL+NL++LDL SN++ + ++ L+Q+
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
L L L ++ + + +LS L L L N + S L+SL +L +L
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 274 SGVIPHSIGNLTGLLLLNMCENHL-SGPIPKSFKNLTSVERVLLNQNNL 321
+ + IG+L L LN+ N + S +P+ F NLT++E + L+ N +
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 9 LVHLNLSFNILFGI-IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQL 57
L LN++ N++ +P NL+NL++LDL SN++ + ++ L+Q+
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
L L L ++ + + +LS L L L N + S L+SL +L +L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 274 SGVIPHSIGNLTGLLLLNMCENHL-SGPIPKSFKNLTSVERVLLNQNNL 321
+ + IG+L L LN+ N + S +P+ F NLT++E + L+ N +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 FAFSSFPHLVHLNLSFNILFGI-IPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQL 57
F L LN++ N++ +P NL+NL++LDL SN++ + ++ L+Q+
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 214 SLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHL 273
L L L ++ + + +LS L L L N + S L+SL +L +L
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Query: 274 SGVIPHSIGNLTGLLLLNMCENHL-SGPIPKSFKNLTSVERVLLNQNNL 321
+ + IG+L L LN+ N + S +P+ F NLT++E + L+ N +
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2ATC|B Chain B, Crystal And Molecular Structures Of Native And
Ctp-Liganded Aspartate Carbamoyltransferase From
Escherichia Coli
Length = 152
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 353 KLQVLDLSSNNIVGEIPVQLG-KLFSLNKLILNLNQLSGGMPLELGSL 399
KLQV ++ ++ IP ++G KL SL KL ++++ G+ L G +
Sbjct: 6 KLQVAEIKRGTVINHIPAEIGFKLLSLFKLTETQDRITIGLNLPSGEM 53
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 71/178 (39%), Gaps = 18/178 (10%)
Query: 26 QIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQ-LSLINVL 84
Q+ NL +LQYL+L N+ G+ QL +L LH P Q L L+ VL
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 85 ALCHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQF-SGSIPLS--LGNLS 141
L H C +L L L ++L N F GSI + L +
Sbjct: 430 NLSH----CLLDTSNQH----------LLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVG 475
Query: 142 NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN 199
+L+ L L S + L+++ LDLS N L G + +L L L NN
Sbjct: 476 SLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNN 533
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 114/293 (38%), Gaps = 21/293 (7%)
Query: 27 IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL 86
+ NL NL+ L LGSN +S + E L++L F N +H + L L+L
Sbjct: 124 VHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSL 183
Query: 87 CHNYFVCXXXXXXXXXXXXXXXIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKL 146
N + G+LN QN S L LG + D
Sbjct: 184 NFNGNDIKGIEPGAFISKIFQSLKFG-GSLNLFIIFKGLQNSTLQS--LWLGTFEDTDDQ 240
Query: 147 YLYSNSFSG----SIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS 202
YL S +F G S+ SI NL+ DLS + +F + + + L L+
Sbjct: 241 YLTSATFEGLCDMSVESI--NLQKHRFSDLSSS--------TFRCFTRVQELDLTAAHLN 290
Query: 203 GSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN-GLYSFVPEEIRYLT 261
G LP + + SL L L+ N + + + SLR LY+ N + L
Sbjct: 291 G-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLE 349
Query: 262 SLSELELCTNHL--SGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVE 312
+L +L+L + + S + NL L LN+ N G ++FK +E
Sbjct: 350 NLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLE 402
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 140/340 (41%), Gaps = 52/340 (15%)
Query: 135 LSLGNLSNLDKLYLYSNSFSG----SIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSS 190
L LG + D YL S +F G S+ SI NL+ DLS + +F +
Sbjct: 229 LWLGTFEDTDDQYLTSATFEGLCDMSVESI--NLQKHRFSDLSSS--------TFRCFTR 278
Query: 191 LTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN--- 247
+ + L L+G LP + + SL L L+ N + + + SLR LY+ N
Sbjct: 279 VQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRK 337
Query: 248 -GLYSFVPEEIRYLTSLS------ELELCTN-------HLS----------GVIPHSIGN 283
L + E++ L L E C N HL G+ +
Sbjct: 338 LDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKE 397
Query: 284 LTGLLLLNMCENHLSGPIPKS-FKNLT-----SVERVLL---NQNNLSGKVNVPKLGTFI 334
L LL++ HL P S F+NL ++ LL NQ+ L+G ++ L
Sbjct: 398 CPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQG 457
Query: 335 ISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPL 394
S + S S + L++L LSS N++ L ++N L L+ N L+G
Sbjct: 458 NSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMD 517
Query: 395 ELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNN 434
L L L YL++++N ++ P + L + ++LS+N
Sbjct: 518 ALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+L L L L L NQ+S ++P + L+ L+ LYL N + ++R L L L+
Sbjct: 146 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLD 198
Query: 268 L 268
+
Sbjct: 199 V 199
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSG 155
VL L L T+ L NQ S +PL+ L+ L LYL N S
Sbjct: 146 VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISD 187
>pdb|2QE8|A Chain A, Crystal Structure Of A Putative Hydrolase (Ava_4197) From
Anabaena Variabilis Atcc 29413 At 1.35 A Resolution
pdb|2QE8|B Chain B, Crystal Structure Of A Putative Hydrolase (Ava_4197) From
Anabaena Variabilis Atcc 29413 At 1.35 A Resolution
Length = 343
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 60 LYFDVNQLHGSIPLEIGQ 77
LYFD NQLH S PL G+
Sbjct: 304 LYFDCNQLHHSAPLNAGE 321
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+L L L L L NQ+S ++P + L+ L+ LYL N + ++R L L L+
Sbjct: 169 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLD 221
Query: 268 L 268
+
Sbjct: 222 V 222
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS 154
VL L L T+ L NQ S +PL+ L+ L LYL N S
Sbjct: 169 VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS 209
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+L L L L L NQ+S ++P + L+ L+ LYL N + ++R L L L+
Sbjct: 169 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLD 221
Query: 268 L 268
+
Sbjct: 222 V 222
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS 154
VL L L T+ L NQ S +PL+ L+ L LYL N S
Sbjct: 169 VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS 209
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 208 ILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELE 267
+L L L L L NQ+S ++P + L+ L+ LYL N + ++R L L L+
Sbjct: 169 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLD 221
Query: 268 L 268
+
Sbjct: 222 V 222
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS 154
VL L L T+ L NQ S +PL+ L+ L LYL N S
Sbjct: 169 VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS 209
>pdb|2QG9|B Chain B, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QG9|D Chain D, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
Length = 153
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 353 KLQVLDLSSNNIVGEIPVQLG-KLFSLNKLILNLNQLSGGMPLELGSL 399
KLQV + ++ IP Q+G KL SL KL +++ G+ L G +
Sbjct: 6 KLQVEAIKRGTVIAHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEM 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,958,175
Number of Sequences: 62578
Number of extensions: 482051
Number of successful extensions: 2477
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1152
Number of HSP's gapped (non-prelim): 721
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)