Query 039967
Match_columns 445
No_of_seqs 173 out of 3099
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 03:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.2E-48 9.1E-53 403.2 30.7 438 4-443 115-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.4E-47 3.1E-52 399.3 31.0 440 2-444 88-567 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.2E-37 4.8E-42 278.0 6.0 375 9-385 54-448 (873)
4 KOG4194 Membrane glycoprotein 100.0 9.9E-37 2.1E-41 273.9 8.2 385 33-433 54-448 (873)
5 KOG0444 Cytoskeletal regulator 100.0 2E-34 4.3E-39 261.5 -5.0 370 3-417 3-379 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 3.8E-35 8.3E-40 252.4 -9.2 422 4-442 65-544 (565)
7 KOG0618 Serine/threonine phosp 100.0 5.7E-31 1.2E-35 248.9 -2.8 411 6-437 44-489 (1081)
8 KOG0472 Leucine-rich repeat pr 100.0 1.6E-31 3.5E-36 230.2 -10.5 387 27-442 41-522 (565)
9 KOG0444 Cytoskeletal regulator 99.9 3.7E-30 7.9E-35 233.9 -4.9 361 31-437 7-375 (1255)
10 KOG0618 Serine/threonine phosp 99.9 8.9E-29 1.9E-33 234.2 -3.9 402 9-441 23-470 (1081)
11 PLN03210 Resistant to P. syrin 99.9 2.1E-23 4.5E-28 218.5 26.5 341 46-413 549-906 (1153)
12 PLN03210 Resistant to P. syrin 99.9 5E-23 1.1E-27 215.7 27.4 340 24-389 551-906 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.1E-24 6.8E-29 185.1 -4.2 399 8-434 68-498 (498)
14 KOG4237 Extracellular matrix p 99.9 4.6E-24 1E-28 184.0 -5.7 382 32-437 68-477 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 2.1E-18 4.5E-23 168.7 15.4 261 118-441 202-462 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 6.7E-18 1.5E-22 165.2 15.9 261 93-393 201-462 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 5E-19 1.1E-23 162.0 -1.0 161 261-436 137-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 6E-16 1.3E-20 152.5 14.2 181 238-437 242-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.6 1.5E-17 3.3E-22 152.1 -0.3 281 98-411 3-318 (319)
20 PRK15370 E3 ubiquitin-protein 99.6 3.2E-15 6.9E-20 147.4 13.3 245 117-389 178-428 (754)
21 KOG0617 Ras suppressor protein 99.6 9E-18 1.9E-22 129.0 -4.9 164 27-210 29-193 (264)
22 KOG0617 Ras suppressor protein 99.5 8.3E-17 1.8E-21 123.7 -4.8 156 5-178 31-186 (264)
23 KOG1909 Ran GTPase-activating 99.1 5.9E-12 1.3E-16 108.3 -0.7 236 162-412 27-310 (382)
24 KOG3207 Beta-tubulin folding c 99.1 1E-11 2.2E-16 109.9 0.6 210 211-439 119-341 (505)
25 KOG1259 Nischarin, modulator o 99.1 2.3E-11 5E-16 102.6 2.2 129 285-438 284-413 (490)
26 PF14580 LRR_9: Leucine-rich r 99.1 9.3E-11 2E-15 94.5 5.0 100 329-431 43-147 (175)
27 KOG1909 Ran GTPase-activating 99.1 7.2E-12 1.6E-16 107.8 -2.5 233 4-250 27-311 (382)
28 KOG4658 Apoptotic ATPase [Sign 99.1 1.4E-10 3E-15 116.8 5.9 128 117-247 523-652 (889)
29 KOG3207 Beta-tubulin folding c 99.0 4.3E-11 9.2E-16 106.0 1.1 207 5-226 119-339 (505)
30 KOG1259 Nischarin, modulator o 99.0 6E-11 1.3E-15 100.1 1.3 205 182-414 207-413 (490)
31 COG4886 Leucine-rich repeat (L 99.0 4E-10 8.6E-15 106.2 6.5 175 237-438 116-291 (394)
32 KOG4658 Apoptotic ATPase [Sign 99.0 3.1E-10 6.8E-15 114.3 4.5 106 94-200 546-653 (889)
33 PF13855 LRR_8: Leucine rich r 98.9 1.8E-09 3.9E-14 71.5 3.6 59 377-435 2-60 (61)
34 PF14580 LRR_9: Leucine-rich r 98.9 1.6E-09 3.5E-14 87.4 4.0 106 115-225 17-125 (175)
35 PLN03150 hypothetical protein; 98.9 5.1E-09 1.1E-13 103.4 7.9 112 330-441 420-532 (623)
36 PF13855 LRR_8: Leucine rich r 98.8 3.1E-09 6.8E-14 70.3 3.9 61 352-412 1-61 (61)
37 PLN03150 hypothetical protein; 98.8 3.9E-09 8.5E-14 104.2 6.2 92 353-444 419-510 (623)
38 COG4886 Leucine-rich repeat (L 98.8 6.1E-09 1.3E-13 98.1 6.1 180 113-300 112-292 (394)
39 KOG0532 Leucine-rich repeat (L 98.8 2.7E-10 5.8E-15 104.4 -3.3 170 240-437 78-247 (722)
40 KOG0532 Leucine-rich repeat (L 98.7 4.5E-10 9.8E-15 102.9 -4.5 172 8-202 76-247 (722)
41 KOG2120 SCF ubiquitin ligase, 98.6 8.6E-10 1.9E-14 93.1 -4.5 172 238-411 186-374 (419)
42 KOG2982 Uncharacterized conser 98.5 3.1E-08 6.7E-13 83.9 1.2 196 213-408 71-287 (418)
43 KOG4341 F-box protein containi 98.5 1.7E-09 3.7E-14 95.5 -7.4 289 141-429 138-457 (483)
44 KOG0531 Protein phosphatase 1, 98.4 3.5E-08 7.6E-13 93.2 -0.3 127 140-273 71-198 (414)
45 KOG2120 SCF ubiquitin ligase, 98.4 2.7E-09 5.9E-14 90.2 -7.4 180 32-225 186-375 (419)
46 KOG1859 Leucine-rich repeat pr 98.4 6.6E-09 1.4E-13 98.2 -5.8 124 286-413 165-292 (1096)
47 KOG0531 Protein phosphatase 1, 98.3 4.3E-08 9.4E-13 92.5 -2.0 247 163-442 70-323 (414)
48 KOG2982 Uncharacterized conser 98.3 2.6E-07 5.7E-12 78.4 2.3 198 94-291 72-285 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.3 1.5E-07 3.3E-12 78.8 0.0 229 113-365 26-316 (388)
50 KOG1859 Leucine-rich repeat pr 98.1 5.4E-08 1.2E-12 92.2 -6.6 181 110-298 102-292 (1096)
51 KOG4341 F-box protein containi 98.0 1.2E-07 2.6E-12 84.1 -5.6 291 117-407 138-459 (483)
52 PF13306 LRR_5: Leucine rich r 98.0 2.4E-05 5.1E-10 60.9 7.1 60 2-63 7-66 (129)
53 KOG1644 U2-associated snRNP A' 98.0 1.5E-05 3.2E-10 64.2 5.8 88 347-434 59-150 (233)
54 PRK15386 type III secretion pr 97.9 8E-05 1.7E-09 68.1 9.6 32 352-386 156-187 (426)
55 COG5238 RNA1 Ran GTPase-activa 97.9 5.7E-06 1.2E-10 69.6 1.7 207 6-226 29-285 (388)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 48.0 3.2 35 378-413 3-37 (44)
57 PF12799 LRR_4: Leucine Rich r 97.8 1.3E-05 2.9E-10 48.3 2.3 38 400-438 1-38 (44)
58 KOG1644 U2-associated snRNP A' 97.8 4.3E-05 9.3E-10 61.6 5.5 83 142-226 43-126 (233)
59 KOG4579 Leucine-rich repeat (L 97.8 1.3E-06 2.8E-11 65.5 -3.2 59 9-68 29-90 (177)
60 PRK15386 type III secretion pr 97.7 8.4E-05 1.8E-09 68.0 6.9 73 281-363 48-123 (426)
61 PF13306 LRR_5: Leucine rich r 97.7 0.00012 2.5E-09 56.9 6.4 9 212-220 80-88 (129)
62 KOG3665 ZYG-1-like serine/thre 97.6 1.4E-05 3.1E-10 79.1 0.9 107 55-176 122-231 (699)
63 KOG4579 Leucine-rich repeat (L 97.6 5.1E-06 1.1E-10 62.4 -1.7 132 286-441 28-163 (177)
64 KOG3665 ZYG-1-like serine/thre 97.6 3.2E-05 6.8E-10 76.8 2.2 151 284-436 121-287 (699)
65 KOG2123 Uncharacterized conser 97.4 7.3E-06 1.6E-10 69.2 -4.2 95 310-406 20-123 (388)
66 KOG1947 Leucine rich repeat pr 97.3 2.4E-05 5.1E-10 76.1 -2.2 187 187-378 186-389 (482)
67 KOG2739 Leucine-rich acidic nu 97.2 0.00019 4.1E-09 60.5 1.8 83 348-430 61-149 (260)
68 KOG1947 Leucine rich repeat pr 97.0 8E-05 1.7E-09 72.4 -2.7 217 212-438 187-441 (482)
69 KOG2739 Leucine-rich acidic nu 96.8 0.00079 1.7E-08 56.8 2.4 88 349-438 40-130 (260)
70 KOG2123 Uncharacterized conser 96.7 8.4E-05 1.8E-09 63.0 -3.9 100 327-430 18-123 (388)
71 KOG3864 Uncharacterized conser 96.5 0.00032 7E-09 56.7 -1.8 84 353-436 102-188 (221)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.0061 1.3E-07 30.4 0.6 17 426-443 2-18 (22)
73 PF00560 LRR_1: Leucine Rich R 95.1 0.01 2.2E-07 29.6 0.8 21 401-422 1-21 (22)
74 KOG3864 Uncharacterized conser 93.8 0.0098 2.1E-07 48.4 -1.3 83 330-412 103-188 (221)
75 KOG4308 LRR-containing protein 93.7 0.00067 1.4E-08 64.5 -9.5 37 286-322 145-185 (478)
76 PF13504 LRR_7: Leucine rich r 92.3 0.063 1.4E-06 24.7 0.7 13 401-413 2-14 (17)
77 PF13516 LRR_6: Leucine Rich r 91.2 0.075 1.6E-06 27.0 0.3 17 352-368 2-18 (24)
78 smart00369 LRR_TYP Leucine-ric 87.1 0.56 1.2E-05 24.2 1.9 18 7-24 2-19 (26)
79 smart00370 LRR Leucine-rich re 87.1 0.56 1.2E-05 24.2 1.9 18 7-24 2-19 (26)
80 KOG0473 Leucine-rich repeat pr 86.9 0.012 2.5E-07 49.1 -7.0 83 5-90 40-122 (326)
81 KOG4308 LRR-containing protein 86.1 0.0063 1.4E-07 58.0 -10.3 176 263-438 89-304 (478)
82 KOG0473 Leucine-rich repeat pr 78.5 0.096 2.1E-06 43.8 -4.8 84 327-413 41-124 (326)
83 smart00368 LRR_RI Leucine rich 75.5 0.71 1.5E-05 24.4 -0.4 17 400-416 2-18 (28)
84 smart00365 LRR_SD22 Leucine-ri 67.2 4.2 9E-05 21.1 1.4 14 400-413 2-15 (26)
85 smart00364 LRR_BAC Leucine-ric 67.1 4.1 9E-05 21.1 1.3 13 401-413 3-15 (26)
86 smart00367 LRR_CC Leucine-rich 65.4 4.6 0.0001 20.7 1.4 13 423-435 1-13 (26)
87 KOG3763 mRNA export factor TAP 57.1 5.6 0.00012 38.2 1.3 80 350-430 216-307 (585)
88 KOG3763 mRNA export factor TAP 49.7 8 0.00017 37.2 1.1 42 349-390 241-284 (585)
89 KOG4242 Predicted myosin-I-bin 27.7 2.9E+02 0.0064 26.7 7.3 72 54-129 164-253 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.2e-48 Score=403.23 Aligned_cols=438 Identities=37% Similarity=0.563 Sum_probs=306.0
Q ss_pred cCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccE
Q 039967 4 SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINV 83 (445)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 83 (445)
..+++||+|++++|.+....+. ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.++++|++
T Consensus 115 ~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 115 TTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred ccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 4677888888888777654442 44667777777777776667777777777777777777776667777777777777
Q ss_pred EEecCcccc----------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCcc
Q 039967 84 LALCHNYFV----------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSF 153 (445)
Q Consensus 84 l~l~~~~~~----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 153 (445)
+++++|.+. .+|+++++++|.+....|..+.++++|++|++++|.+....|..+..+++|++|.+.+|.+
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 777766542 5667777777777666777777777777777777776666666677777777777777766
Q ss_pred ccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccc
Q 039967 154 SGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 233 (445)
Q Consensus 154 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 233 (445)
....|..+.++++|+.|++++|.+....|..+..+++|+.|++.+|.+....|..+..+++|+.+++++|.+....+..+
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 65566666666777777777776665666666666667777766666665566666666666666666666654555555
Q ss_pred cCCCcccEEEeeCccccccChhh------------------------hcccccccEEecccCccCCCccccccccCCccE
Q 039967 234 GNLSSLRALYLYNNGLYSFVPEE------------------------IRYLTSLSELELCTNHLSGVIPHSIGNLTGLLL 289 (445)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~------------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 289 (445)
..+++|+.+++++|.+....+.. +..+++|+.|++.+|.+....+..+..++.|+.
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 432 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCE
Confidence 55566666666665554434444 444455555555555554444444555555556
Q ss_pred EEcCCCcccCCCCccccccCccceeeccCccccccc----cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccc
Q 039967 290 LNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV----NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV 365 (445)
Q Consensus 290 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 365 (445)
+++++|.+.+..+..+..+++|+.|++++|.+.+.. ..++|+.|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus 433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512 (968)
T ss_pred EECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence 666665555555555555666666666666554221 2456777888888887777777778888888888888888
Q ss_pred cccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCCCC
Q 039967 366 GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKILVE 443 (445)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 443 (445)
+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|+++++++|++.+.+|..
T Consensus 513 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 888888888888888888888888888888888888999999999888888888888888999999999988888853
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.4e-47 Score=399.30 Aligned_cols=440 Identities=38% Similarity=0.574 Sum_probs=369.2
Q ss_pred CccCCCCCcEEeccCCcCCCCCC-cccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCC
Q 039967 2 AFSSFPHLVHLNLSFNILFGIIP-PQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSL 80 (445)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 80 (445)
+|+.+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..|. ..+++|++|++++|.+.+..|..+..+++
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCC
Confidence 36789999999999999875444 4455899999999999998866664 45789999999999999889999999999
Q ss_pred ccEEEecCcccc----------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEecc
Q 039967 81 INVLALCHNYFV----------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYS 150 (445)
Q Consensus 81 L~~l~l~~~~~~----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 150 (445)
|+++++++|.+. ++|++|++++|.+....|..+..+++|++|++++|.+....|..+..+++|++|++.+
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 999999988653 6899999999999989999999999999999999999888899999999999999999
Q ss_pred CccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCC
Q 039967 151 NSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIP 230 (445)
Q Consensus 151 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 230 (445)
|.+....|..+.++++|+.|++++|.+.+..|..+..+++|++|++++|.+....|..+..+++|+.+++++|.+....+
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence 99887888999999999999999999988888889999999999999999988888889999999999999999887777
Q ss_pred ccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCc
Q 039967 231 SSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTS 310 (445)
Q Consensus 231 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 310 (445)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+...++++.+++++|.+.+..|..+..+++
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 88899999999999999998777888888899999999988876555555555555555555555555444444444445
Q ss_pred cceeec------------------------cCccccccc-----cCCCcceEEcccCccccCCCccccCCCCCcEEECCC
Q 039967 311 VERVLL------------------------NQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSS 361 (445)
Q Consensus 311 L~~L~l------------------------~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (445)
|+.|++ ++|.+.+.. .+++|+.|++.+|++.+..+..+ ..++|+.|++++
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~ 484 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSR 484 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcC
Confidence 555544 444443221 25566666666666655555443 346788888888
Q ss_pred CccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccccCC
Q 039967 362 NNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGHKIL 441 (445)
Q Consensus 362 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 441 (445)
|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|+|++|.+++..|..+..+++|++|++++|++++.+|
T Consensus 485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred CccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 88888888888899999999999999988889999999999999999999998899999999999999999999999999
Q ss_pred CCC
Q 039967 442 VEL 444 (445)
Q Consensus 442 ~~~ 444 (445)
..+
T Consensus 565 ~~l 567 (968)
T PLN00113 565 KNL 567 (968)
T ss_pred hhH
Confidence 654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-37 Score=278.04 Aligned_cols=375 Identities=24% Similarity=0.240 Sum_probs=272.5
Q ss_pred CcEEeccCCcCCCCCCcccCC-C-CCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEe
Q 039967 9 LVHLNLSFNILFGIIPPQIGN-L-SNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLAL 86 (445)
Q Consensus 9 L~~L~l~~~~~~~~~~~~~~~-~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 86 (445)
-+.|+.++..+..+....+.. + +.-+.|++++|.+....+..|.++++|+.+++.+|.++ .+|.......+++.+.+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 344555665555443322222 1 23556888888887777777788888888888888776 56766666666777777
Q ss_pred cCcccc----------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccc
Q 039967 87 CHNYFV----------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGS 156 (445)
Q Consensus 87 ~~~~~~----------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 156 (445)
.+|.+. +.|+.++++.|.+++.....|..-.++++|++++|.+++.....|..+.+|-.|.++.|.++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 766554 5677777777777766666677777888888888888877777888888888888888888855
Q ss_pred cCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCC
Q 039967 157 IPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNL 236 (445)
Q Consensus 157 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 236 (445)
.+..|.++++|+.|++..|++...-.-.|+++++|+.|.+..|.+.......|..+.++++|++..|.+......++.++
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 55577788888888888888764445567888888888888888887767778888888888888888876667778888
Q ss_pred CcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeec
Q 039967 237 SSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLL 316 (445)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 316 (445)
++|+.|++++|.+..+-++.|..+++|+.|+++.|.++...+..+..+..|+.|+++.|++.......|.++.+|++|++
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 88888888888888877778888888888888888888777778888888888888888887666667788888888888
Q ss_pred cCcccccc--------ccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccC
Q 039967 317 NQNNLSGK--------VNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNL 385 (445)
Q Consensus 317 ~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 385 (445)
+.|.+.-. ..+++|+.|++.+|++......++.+++.|++|++.+|.+...-+.+|+.+ .|++|.+..
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 88876521 115566666666666654444555666666666666666655555566555 555555543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-37 Score=273.87 Aligned_cols=385 Identities=23% Similarity=0.212 Sum_probs=288.7
Q ss_pred CcEEeccCcccCCCCCccccCC--CCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCcc
Q 039967 33 LQYLDLGSNQLSGVIPLEIGHL--NQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIP 110 (445)
Q Consensus 33 L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~ 110 (445)
-+.|+.+...+.......+... +.-+.|++++|.+....+..|.++++|+++++..|.. ..+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L---------------t~IP 118 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL---------------TRIP 118 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh---------------hhcc
Confidence 4556788777765544455433 2456799999999988888899999888888776654 2555
Q ss_pred ccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCC
Q 039967 111 LVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSS 190 (445)
Q Consensus 111 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 190 (445)
..-....+|+.|++.+|.++.+....+..++-|++++++.|.++..--..|..-.++++|++++|+|+......|..+.+
T Consensus 119 ~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 119 RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred cccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 54444456777777777777666666777777777777777776444445666677777888777777666667777777
Q ss_pred CcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEeccc
Q 039967 191 LTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCT 270 (445)
Q Consensus 191 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 270 (445)
|..|+++.|+++...+..|+.+++|+.|++..|.+.-.--.+|.++++|+.|.+..|.+.....+.|..+.++++|+++.
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence 77888888887766666777778888888877777644345677778888888877777776667777777888888887
Q ss_pred CccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc-----cCCCcceEEcccCccccCCC
Q 039967 271 NHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIP 345 (445)
Q Consensus 271 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~ 345 (445)
|++......++..++.|+.|++++|.+...-+..+..+++|+.|+++.|.+.... .+..|+.|.+++|.++-.-.
T Consensus 279 N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE 358 (873)
T ss_pred chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence 7777656667777778888888888777666666777778888888877765322 26677777888877765555
Q ss_pred ccccCCCCCcEEECCCCcccc---ccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC
Q 039967 346 PEIGDSPKLQVLDLSSNNIVG---EIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN 422 (445)
Q Consensus 346 ~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 422 (445)
..+..+.+|++||+++|.+.. ..+..|..+++|++|.+.||++..+...+|.++++|+.|||.+|.+..+.+.+|..
T Consensus 359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 578889999999999998662 34566778999999999999998666688999999999999999999899999988
Q ss_pred CCCccEEeCCC
Q 039967 423 LLRLCYLDLSN 433 (445)
Q Consensus 423 ~~~L~~l~l~~ 433 (445)
+ .|++|.+..
T Consensus 439 m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 439 M-ELKELVMNS 448 (873)
T ss_pred c-hhhhhhhcc
Confidence 8 888876543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2e-34 Score=261.47 Aligned_cols=370 Identities=27% Similarity=0.375 Sum_probs=236.5
Q ss_pred ccCCCCCcEEeccCCcCC-CCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCc
Q 039967 3 FSSFPHLVHLNLSFNILF-GIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLI 81 (445)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 81 (445)
.+-++-+|-+++++|++. .-.|..+..++++++|.+....+. ..|+.++.+++|++|.+++|++. .+--.++.++.|
T Consensus 3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRL 80 (1255)
T ss_pred ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhh
Confidence 456788899999999998 446888888999999999999888 88999999999999999999876 233344555544
Q ss_pred cEEEecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccc
Q 039967 82 NVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSII 161 (445)
Q Consensus 82 ~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 161 (445)
+.+.+..|+.. .+.+|..+-.+..|+.||+++|++. ..|..+...+++-.|++++|.|..+....|
T Consensus 81 Rsv~~R~N~LK-------------nsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lf 146 (1255)
T KOG0444|consen 81 RSVIVRDNNLK-------------NSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLF 146 (1255)
T ss_pred HHHhhhccccc-------------cCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHH
Confidence 44444333221 3356666667777777777777776 566666666677777777777663333345
Q ss_pred cCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccE
Q 039967 162 GNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRA 241 (445)
Q Consensus 162 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 241 (445)
-++..|-.||+++|++. .+|..+..+..|++|.+++|++. ......+..+++|++
T Consensus 147 inLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~------------------------hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 147 INLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN------------------------HFQLRQLPSMTSLSV 201 (1255)
T ss_pred HhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh------------------------HHHHhcCccchhhhh
Confidence 56666666666666654 44444555555555555555443 222223334444444
Q ss_pred EEeeCcccc-ccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcc
Q 039967 242 LYLYNNGLY-SFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNN 320 (445)
Q Consensus 242 L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 320 (445)
|++++.+-+ ..+|..+..+.+|..++++.|++. ..|+.+..+++|+.|++++|.++ +.........+|+.|++++|+
T Consensus 202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccch
Confidence 444443221 113334444555555555555554 44555555555555555555555 333334444555555555555
Q ss_pred ccccc----cCCCcceEEcccCccc-cCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchh
Q 039967 321 LSGKV----NVPKLGTFIISVNNIS-ESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE 395 (445)
Q Consensus 321 ~~~~~----~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 395 (445)
++..+ .++.|+.|...+|+++ +.+|..++.+..|+++...+|.+. ..|+++..|.+|+.|.++.|.+. ++|++
T Consensus 280 Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPea 357 (1255)
T KOG0444|consen 280 LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEA 357 (1255)
T ss_pred hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhh
Confidence 54221 2444444444445544 346777888888888888888876 78888888888888888888887 78888
Q ss_pred hcCCccCceeecCCCccccccC
Q 039967 396 LGSLIELQYLDLSTNKLKSSIP 417 (445)
Q Consensus 396 ~~~~~~L~~L~l~~~~~~~~~~ 417 (445)
++-++.|++||+.+|.-.-..|
T Consensus 358 IHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 358 IHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhcCCcceeeccCCcCccCCC
Confidence 8888888888888887664444
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.8e-35 Score=252.44 Aligned_cols=422 Identities=30% Similarity=0.407 Sum_probs=319.6
Q ss_pred cCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccE
Q 039967 4 SSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINV 83 (445)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 83 (445)
..+.-+.+|++..|+.... |.+++++..+..++.+++.+. ..|.++.....|+.++++++.+. ..++.+..+..+..
T Consensus 65 ~nL~~l~vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLED 141 (565)
T ss_pred hcccceeEEEeccchhhhC-CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhh
Confidence 3456677888888877666 556777888888888888887 77888888888888888888876 57778888888888
Q ss_pred EEecCcccc---------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccc
Q 039967 84 LALCHNYFV---------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS 154 (445)
Q Consensus 84 l~l~~~~~~---------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 154 (445)
++..+++.. .++..+++.++.+....+..+. |+.|++||...|.++ ..|..++.+..|..|.+..|++.
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc
Confidence 887777664 5567778888887766666555 889999999988887 67788999999999999999887
Q ss_pred cccCccccCCCCcCEEeCCCccccccccccc-cCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccc
Q 039967 155 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSF-GNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSI 233 (445)
Q Consensus 155 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 233 (445)
..| .|.+|..|+.+.++.|.+. ..|++. ..++++.+|++.+|.+. ..|+.+..+.+|+.+|+++|.++ ..+.++
T Consensus 220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sL 294 (565)
T KOG0472|consen 220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSL 294 (565)
T ss_pred -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccc
Confidence 666 6888999999999988876 566555 48899999999999998 67888888899999999999887 677788
Q ss_pred cCCCcccEEEeeCccccccChhhhc-----------------------------------------ccccccEEecccCc
Q 039967 234 GNLSSLRALYLYNNGLYSFVPEEIR-----------------------------------------YLTSLSELELCTNH 272 (445)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~~~-----------------------------------------~~~~L~~L~l~~~~ 272 (445)
+.+ .|+.|.+.||++..+..+.+. ...+.+.|++++-.
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 888 888888888865332111111 11233445555444
Q ss_pred cCCCcccccccc--CCccEEEcCCCcccCCCCccccccCccce-eeccCccccc----cccCCCcceEEcccCccccCCC
Q 039967 273 LSGVIPHSIGNL--TGLLLLNMCENHLSGPIPKSFKNLTSVER-VLLNQNNLSG----KVNVPKLGTFIISVNNISESIP 345 (445)
Q Consensus 273 ~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~ 345 (445)
++..+.+.|..- .-++.+++++|++. ++|..+..+..+.. +.++.+.+.- .+.+++|..|++++|.+. .+|
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP 451 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLP 451 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcc
Confidence 443333333221 23566777777766 55555554444433 3444444331 123889999999998886 567
Q ss_pred ccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCC
Q 039967 346 PEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLR 425 (445)
Q Consensus 346 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 425 (445)
..+..+-.|+.++++.|.+. ..|........++++..++|++....+..+.+|.+|..||+.+|.+. ..|..+.++.+
T Consensus 452 ~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn 529 (565)
T KOG0472|consen 452 EEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTN 529 (565)
T ss_pred hhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccc
Confidence 77777888999999999987 77888888888999999999998777777999999999999999997 78889999999
Q ss_pred ccEEeCCCCcccccCCC
Q 039967 426 LCYLDLSNNQFGHKILV 442 (445)
Q Consensus 426 L~~l~l~~~~~~~~~~~ 442 (445)
|+++.++||+|. .|.
T Consensus 530 L~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 530 LRHLELDGNPFR--QPR 544 (565)
T ss_pred eeEEEecCCccC--CCH
Confidence 999999999998 453
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=5.7e-31 Score=248.89 Aligned_cols=411 Identities=30% Similarity=0.351 Sum_probs=291.7
Q ss_pred CCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEE
Q 039967 6 FPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLA 85 (445)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 85 (445)
+-+|++|++++|.+... |..+..+++|+.|+++.|.|. ..|....++.+|+++.+.++.+. ..|.+++.+.+|+.++
T Consensus 44 ~v~L~~l~lsnn~~~~f-p~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSF-PIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLD 120 (1081)
T ss_pred eeeeEEeeccccccccC-CchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccc
Confidence 34588999998877655 556777888999999988888 56677888889999998887765 6788888888888888
Q ss_pred ecCcccc----------------------------cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccc
Q 039967 86 LCHNYFV----------------------------CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSL 137 (445)
Q Consensus 86 l~~~~~~----------------------------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 137 (445)
++++.|. ..++.+++..+.+...++..+..+.. .|++..|.+. . ..+
T Consensus 121 lS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dl 195 (1081)
T KOG0618|consen 121 LSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDL 195 (1081)
T ss_pred cchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhh
Confidence 8888775 22334444444444444433333333 3566665554 1 234
Q ss_pred cCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCE
Q 039967 138 GNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSA 217 (445)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 217 (445)
..+++|+.+....+++.... -.-++|+.|+...|.+....+ .....+|+.++++.+.+. .+|.++..+++|+.
T Consensus 196 s~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEA 268 (1081)
T ss_pred hhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceE
Confidence 44556666666555544211 123667777777777652221 233456778888888777 55677788888888
Q ss_pred EEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCC-ccEEEcCCCc
Q 039967 218 LGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTG-LLLLNMCENH 296 (445)
Q Consensus 218 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~ 296 (445)
++...|.+. ..+..+...++|+.+....|.+.. .+......+.|+.|++..|.+.......+..... +..++.+.++
T Consensus 269 l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 269 LNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred ecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence 888877775 444455566777777777777766 3445556778888888888777544444444443 6777777777
Q ss_pred ccCCCCccccccCccceeeccCccccccc-----cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchh
Q 039967 297 LSGPIPKSFKNLTSVERVLLNQNNLSGKV-----NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQ 371 (445)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 371 (445)
+.......-...+.|+.|.+.+|.+++.+ .+++|+.|.+++|++.......+.+++.|++|+++||+++ .+|..
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 66433333345567888888888887653 3889999999999998777788899999999999999998 77788
Q ss_pred hccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccC-ccccCCCCccEEeCCCCccc
Q 039967 372 LGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIP-KSIGNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 372 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~ 437 (445)
+..+..|++|+..+|.+. .+| .+..++.|+.+|++.|++..... ..... ++|++|+++||.+.
T Consensus 426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccc
Confidence 999999999999999998 778 77889999999999999885433 33333 89999999999753
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=1.6e-31 Score=230.19 Aligned_cols=387 Identities=32% Similarity=0.439 Sum_probs=282.3
Q ss_pred cCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCC
Q 039967 27 IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLF 106 (445)
Q Consensus 27 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~ 106 (445)
..+..-++.+.+++|.+. ...+.+.+++.|.+|++.++... ..|+++.++..++.++.+++...
T Consensus 41 wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-------------- 104 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-------------- 104 (565)
T ss_pred hhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh--------------
Confidence 344556888899999887 55567778889999999999887 67888888887777776665432
Q ss_pred CCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccccccccccc
Q 039967 107 NSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG 186 (445)
Q Consensus 107 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 186 (445)
.+|..+....++..++++.+.+. ..++.+..+..++.+...+|+++ ..|..+.++.++..+++.++.+. ..|+..-
T Consensus 105 -~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i 180 (565)
T KOG0472|consen 105 -ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI 180 (565)
T ss_pred -hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH
Confidence 56667777778888888888777 56667777777777777777777 66777777788888888887776 3444444
Q ss_pred CCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEE
Q 039967 187 NLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSEL 266 (445)
Q Consensus 187 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 266 (445)
.++.|++++...|... ..|..++.+..|+.+++..|++. ..+ .|.+|..|++++++.|.+.-.+.....+++++..|
T Consensus 181 ~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceee
Confidence 5777888888777776 56666777888888888888776 333 67777888888887777766555566677778888
Q ss_pred ecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc---------------------
Q 039967 267 ELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV--------------------- 325 (445)
Q Consensus 267 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------- 325 (445)
++++|.++ +.|..+..+++|.+||+++|.++ ..|..++++ +|+.|.+.||.+...-
T Consensus 258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~ 334 (565)
T KOG0472|consen 258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKD 334 (565)
T ss_pred eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 88888776 55666677777888888888777 566667766 7777777777643100
Q ss_pred -------------------c------CCCcc--------------------------eEEcccCcccc------------
Q 039967 326 -------------------N------VPKLG--------------------------TFIISVNNISE------------ 342 (445)
Q Consensus 326 -------------------~------~~~L~--------------------------~L~l~~~~~~~------------ 342 (445)
. ..+.+ .++++.|++.+
T Consensus 335 dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelv 414 (565)
T KOG0472|consen 335 DGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELV 414 (565)
T ss_pred CCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHH
Confidence 0 11122 23333333321
Q ss_pred -----------CCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCc
Q 039967 343 -----------SIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNK 411 (445)
Q Consensus 343 -----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 411 (445)
-.+..+..++.|..|++++|.+. .+|..++.+-.|++++++.|.+. ..|+....+..++.+-.++|+
T Consensus 415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence 11223455788888999988876 77888888888999999998777 778888888888888888899
Q ss_pred cccccCccccCCCCccEEeCCCCcccccCCC
Q 039967 412 LKSSIPKSIGNLLRLCYLDLSNNQFGHKILV 442 (445)
Q Consensus 412 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 442 (445)
+....+..+.++.+|.++++.+|.+- ++|.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp 522 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP 522 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence 98777777999999999999999876 5553
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=3.7e-30 Score=233.91 Aligned_cols=361 Identities=29% Similarity=0.404 Sum_probs=301.8
Q ss_pred CCCcEEeccCcccC-CCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCc
Q 039967 31 SNLQYLDLGSNQLS-GVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSI 109 (445)
Q Consensus 31 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~ 109 (445)
+=.+..++++|.++ +..|..+.+|..++-|.++...+. .+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~---------------------------------------~v 47 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE---------------------------------------QV 47 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh---------------------------------------hC
Confidence 33455566666555 345555555655555555555443 56
Q ss_pred cccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccc-cccCccccCCCCcCEEeCCCccccccccccccCC
Q 039967 110 PLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS-GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNL 188 (445)
Q Consensus 110 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 188 (445)
|+.++.+.+|++|.+.+|++. .+-..+..++.|+.+.+..|.+. ...|..+..+..|..||++.|++. ..|..+...
T Consensus 48 PeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A 125 (1255)
T KOG0444|consen 48 PEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA 125 (1255)
T ss_pred hHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhh
Confidence 677778888888888888887 44567788899999999988875 246777788999999999999987 678889889
Q ss_pred CCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEec
Q 039967 189 SSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELEL 268 (445)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 268 (445)
+++-+|.+++|.|..+....+-++..|-.|++++|.+. ..+..+.++..|++|.+++|++.-+....+..+++|+.|++
T Consensus 126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 99999999999998666677788899999999999987 56667888999999999999987766667777888999999
Q ss_pred ccCccC-CCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccc----cCCCcceEEcccCccccC
Q 039967 269 CTNHLS-GVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKV----NVPKLGTFIISVNNISES 343 (445)
Q Consensus 269 ~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~L~~L~l~~~~~~~~ 343 (445)
++..-+ ...|..+..+.+|..+|++.|.+. ..|+.+..+++|+.|++++|+++... ...+|++|+++.|+++ .
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~ 282 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-V 282 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-c
Confidence 887544 346677888999999999999998 88999999999999999999988543 3679999999999998 7
Q ss_pred CCccccCCCCCcEEECCCCccc-cccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccC
Q 039967 344 IPPEIGDSPKLQVLDLSSNNIV-GEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGN 422 (445)
Q Consensus 344 ~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 422 (445)
+|.++..++.|+.|+..+|+++ +-+|++++++..|+.+..++|.+. ..|+.++.|+.|+.|.|+.|.+. ..|+++.-
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl 360 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL 360 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhh
Confidence 8889999999999999999977 458899999999999999999998 88999999999999999999987 79999999
Q ss_pred CCCccEEeCCCCccc
Q 039967 423 LLRLCYLDLSNNQFG 437 (445)
Q Consensus 423 ~~~L~~l~l~~~~~~ 437 (445)
++.|+.|++..|+-.
T Consensus 361 L~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 361 LPDLKVLDLRENPNL 375 (1255)
T ss_pred cCCcceeeccCCcCc
Confidence 999999999999765
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=8.9e-29 Score=234.16 Aligned_cols=402 Identities=31% Similarity=0.376 Sum_probs=258.2
Q ss_pred CcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecC
Q 039967 9 LVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCH 88 (445)
Q Consensus 9 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 88 (445)
+..|++..|.+-..+-+.+.+..+|+.|++++|.+. ..|..+..+++|+.|+++.|.+. ..|....++.+|+.+.+..
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence 445555555444433344445556777777777776 66667777777777777777665 4556666666666665555
Q ss_pred cccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCC-------------------CceEEec
Q 039967 89 NYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSN-------------------LDKLYLY 149 (445)
Q Consensus 89 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-------------------L~~L~l~ 149 (445)
+.. ...|..+..+.+|++|++++|.+. ..|..+..+.. ++.+.+.
T Consensus 101 n~l---------------~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~ 164 (1081)
T KOG0618|consen 101 NRL---------------QSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLR 164 (1081)
T ss_pred chh---------------hcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhh
Confidence 433 244555555555555555555544 22222222222 3344444
Q ss_pred cCccccccCccccCCCCcCEEeCCCccccccccccccCC--------------------CCCcEEEccCCccCCCCCccc
Q 039967 150 SNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNL--------------------SSLTLMSLFNNSLSGSLPPIL 209 (445)
Q Consensus 150 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~~ 209 (445)
.+.+...++..+.++.+ .|++++|.+. .. .+..+ ++++.|++..|.++...+.
T Consensus 165 ~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-- 237 (1081)
T KOG0618|consen 165 LNVLGGSFLIDIYNLTH--QLDLRYNEME-VL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-- 237 (1081)
T ss_pred hhhcccchhcchhhhhe--eeecccchhh-hh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--
Confidence 44443334444444444 4666666544 11 11222 4555555555555422111
Q ss_pred cCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccE
Q 039967 210 GNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLL 289 (445)
Q Consensus 210 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 289 (445)
....+|+.++++.+.+. ..+.++..+++|+.++...|.+.. .+..+....+|+.+.+..|.+. ..+......+.|++
T Consensus 238 p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRT 314 (1081)
T ss_pred cccccceeeecchhhhh-cchHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeee
Confidence 12245666777766666 333666666777777777766644 4445555566677777766665 34445566677777
Q ss_pred EEcCCCcccCCCCccccccCc-cceeeccCccccc-----cccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCc
Q 039967 290 LNMCENHLSGPIPKSFKNLTS-VERVLLNQNNLSG-----KVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNN 363 (445)
Q Consensus 290 L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 363 (445)
|++..|.+.......+..... ++.++.+.+.+.. ...++.|+.|++.+|.+++.....+.++++|+.|++++|.
T Consensus 315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 777777766332222222222 5555555555442 2337789999999999999999999999999999999999
Q ss_pred cccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccc-ccCC
Q 039967 364 IVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG-HKIL 441 (445)
Q Consensus 364 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~ 441 (445)
+....+..+.+++.|+.|+++||++. .+|.....++.|++|...+|.+. ..| .+..+++|+.+|++.|.++ ..+|
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhh
Confidence 98666677889999999999999998 88899999999999999999997 667 8899999999999999988 3344
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.1e-23 Score=218.48 Aligned_cols=341 Identities=21% Similarity=0.221 Sum_probs=223.6
Q ss_pred CCCccccCCCCCcEEEecCccc------ccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCccccccCCCCC
Q 039967 46 VIPLEIGHLNQLRILYFDVNQL------HGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSL 119 (445)
Q Consensus 46 ~~~~~l~~~~~L~~L~l~~~~~------~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 119 (445)
..+.+|.+|++|+.|.+..+.. ....|..+..++ .+|+.|.+.++++. .+|..+ ...+|
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp-------------~~Lr~L~~~~~~l~-~lP~~f-~~~~L 613 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP-------------PKLRLLRWDKYPLR-CMPSNF-RPENL 613 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcC-------------cccEEEEecCCCCC-CCCCcC-CccCC
Confidence 3445677788888887755432 112344443333 35566666655543 444444 45677
Q ss_pred cEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCC
Q 039967 120 STMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNN 199 (445)
Q Consensus 120 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 199 (445)
+.|++.++.+. .++..+..+++|+.++++++......|. +..+++|++|++++|.....+|..+..+++|+.|.+.+|
T Consensus 614 ~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 614 VKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred cEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 78888877776 4555667777888888876653324443 666778888888777655566777777788888888776
Q ss_pred ccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCC----
Q 039967 200 SLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSG---- 275 (445)
Q Consensus 200 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---- 275 (445)
.....+|..+ ++++|+.|++++|......+. ..++|+.|++.++.+..+ |..+ .+++|++|.+.++....
T Consensus 692 ~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 692 ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-cccc-cccccccccccccchhhcccc
Confidence 5444555544 567788888877754323222 235677788877776553 3222 45677777776543211
Q ss_pred ---CccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccc-cc---cccCCCcceEEcccCccccCCCccc
Q 039967 276 ---VIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL-SG---KVNVPKLGTFIISVNNISESIPPEI 348 (445)
Q Consensus 276 ---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~---~~~~~~L~~L~l~~~~~~~~~~~~~ 348 (445)
..+.....+++|+.|++++|.....+|..+..+++|+.|++++|.. .. ...+++|+.|++++|......+..
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~- 844 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI- 844 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc-
Confidence 1111123346888888888877667788888888888888888742 21 223677888888887654443332
Q ss_pred cCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 349 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 413 (445)
.++|+.|++++|.+. ..|..+..+++|+.|++++|+....++.....+++|+.+++++|...
T Consensus 845 --~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 845 --STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred --ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 367888999988887 67778888899999999988776667777778888889999888654
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=5e-23 Score=215.66 Aligned_cols=340 Identities=24% Similarity=0.274 Sum_probs=222.8
Q ss_pred CcccCCCCCCcEEeccCcc------cCCCCCccccCCC-CCcEEEecCcccccCCCcccccCCCccEEEecCcccccccc
Q 039967 24 PPQIGNLSNLQYLDLGSNQ------LSGVIPLEIGHLN-QLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLA 96 (445)
Q Consensus 24 ~~~~~~~~~L~~L~l~~~~------~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~ 96 (445)
...|.++++|+.|.+..+. +....|..+..++ +|+.|.+.++.+. .+|..+ ... +|+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~--------------~L~ 614 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPE--------------NLV 614 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-Ccc--------------CCc
Confidence 4557777788888775542 2223455555553 5888888777665 445444 223 444
Q ss_pred eEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcc
Q 039967 97 NFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQ 176 (445)
Q Consensus 97 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 176 (445)
+|++.++.+. .++..+..+++|+.|+++++......| .+..+++|++|++.+|......|..+.++++|+.|++++|.
T Consensus 615 ~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 615 KLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred EEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 4555554433 345556677788888887765333444 36677788888887776544667777778888888888776
Q ss_pred ccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccc-----
Q 039967 177 LIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYS----- 251 (445)
Q Consensus 177 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----- 251 (445)
....+|..+ .+++|+.|.+.+|.....+|.. ..+|+.|+++++.+. ..+..+ .+++|+.|.+.++....
T Consensus 693 ~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 693 NLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred CcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccc
Confidence 544556544 6777888888777554444432 356777788777765 333332 45677777766543211
Q ss_pred --cChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccc-cc-C
Q 039967 252 --FVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGK-VN-V 327 (445)
Q Consensus 252 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~-~ 327 (445)
..+.....+++|+.|++++|......+..+..+++|+.|++++|.....+|... .+++|+.|++++|..... +. .
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc
Confidence 111122334678888888886666677778888888888888875444555544 578888888888753322 22 4
Q ss_pred CCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeee
Q 039967 328 PKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLS 389 (445)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 389 (445)
++++.|++.++.+. ..|.++..+++|++|++++|.....++..+..+++|+.+++++|+..
T Consensus 846 ~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 846 TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 57888888888886 46677888899999999998755466767778889999999998754
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=3.1e-24 Score=185.07 Aligned_cols=399 Identities=23% Similarity=0.237 Sum_probs=212.3
Q ss_pred CCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecC-cccccCCCcccccCCCccEEEe
Q 039967 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDV-NQLHGSIPLEIGQLSLINVLAL 86 (445)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l 86 (445)
....++|..|.|..+++..|+.+++||+|+|+.|.|+.+-|++|.+++.|..|.+-+ |.|.......|.++..|+.+.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345677777777777777777777777777777777777777777777766665554 6666555555666665555544
Q ss_pred cCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccc------------
Q 039967 87 CHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFS------------ 154 (445)
Q Consensus 87 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------ 154 (445)
..+ .+.-...+.|+.++++..|.+..|.+..+....|..+..++.+.+..+.+.
T Consensus 148 Nan--------------~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 148 NAN--------------HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred Chh--------------hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 433 223344455666666666666666665444446666666666655554421
Q ss_pred cccCccccCCCCcCEEeCCCcccccccccccc-CCCCCcEEEccCCccCCCCC-ccccCCCCcCEEEccCccccCCCCcc
Q 039967 155 GSIPSIIGNLKSLLQLDLSENQLIGSIPLSFG-NLSSLTLMSLFNNSLSGSLP-PILGNLKSLSALGLHINQLSGVIPSS 232 (445)
Q Consensus 155 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~ 232 (445)
...+..++......-..+.+.++....+..|. .+.++..=....+......| ..|..+++|+++++++|+++.+-..+
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 01111122222222222222222111111111 01111110111111111222 23556666666666666666565666
Q ss_pred ccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCC-CCccccccCcc
Q 039967 233 IGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGP-IPKSFKNLTSV 311 (445)
Q Consensus 233 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L 311 (445)
|.+...++.|++..|++..+....|.++.+|+.|++.+|+++...+.+|....+|.+|++-.|++... -..|+... |
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W--l 371 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW--L 371 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH--H
Confidence 66666666666666666555555666666666666666666655555666666666666665544311 00111100 0
Q ss_pred ceeeccCccccccccCC---CcceEEcccCcccc------------CCCccccCCCCCcE-EECCCCccccccchhhccc
Q 039967 312 ERVLLNQNNLSGKVNVP---KLGTFIISVNNISE------------SIPPEIGDSPKLQV-LDLSSNNIVGEIPVQLGKL 375 (445)
Q Consensus 312 ~~L~l~~~~~~~~~~~~---~L~~L~l~~~~~~~------------~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~~ 375 (445)
+ .....+.+.+. .++.+.+....+.+ ..+.+...|+-+.+ ...++..++ .+|..+.
T Consensus 372 r-----~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP-- 443 (498)
T KOG4237|consen 372 R-----KKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP-- 443 (498)
T ss_pred h-----hCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--
Confidence 0 00000111111 23333333222211 01112233444433 344544444 4444442
Q ss_pred cCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCC
Q 039967 376 FSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNN 434 (445)
Q Consensus 376 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 434 (445)
..-..+|+.+|.+. .+|.. .+.+| .+|+++|++....-..|.++++|.++-|++|
T Consensus 444 ~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 444 VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 24568999999998 55554 44678 9999999998767778999999999988875
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=4.6e-24 Score=184.03 Aligned_cols=382 Identities=22% Similarity=0.243 Sum_probs=256.6
Q ss_pred CCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCccc
Q 039967 32 NLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL 111 (445)
Q Consensus 32 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~ 111 (445)
....|.|..|.|++..+.+|+.+++|+.||+++|.|...-|.+|..++.|..+-+ +++|.|++...+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvl-------------yg~NkI~~l~k~ 134 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVL-------------YGNNKITDLPKG 134 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHh-------------hcCCchhhhhhh
Confidence 5677889999999888899999999999999999999888888888886544433 233566666667
Q ss_pred cccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCcccccc-----------
Q 039967 112 VLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGS----------- 180 (445)
Q Consensus 112 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------- 180 (445)
.|+++..++.|.+..+.+.-...+.|..++.+..|.+-+|.+....-..|..+..++++.+..+++...
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 888888888888888888777778888888888888888887743333777888888888776663211
Q ss_pred -ccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEE--E-ccCccccCC-CCccccCCCcccEEEeeCccccccChh
Q 039967 181 -IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSAL--G-LHINQLSGV-IPSSIGNLSSLRALYLYNNGLYSFVPE 255 (445)
Q Consensus 181 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L--~-l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~ 255 (445)
.|-.++......-..+.+.++.+.....+... ++.+ . -+.+..... ....|.++++|+++++++|.++.+...
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 11112222222222333333333333322211 1211 1 112222212 224688999999999999999999999
Q ss_pred hhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEc
Q 039967 256 EIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFII 335 (445)
Q Consensus 256 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l 335 (445)
+|.+...+++|.+..|++.......|..+.+|+.|++.+|+++...|.+|.....|..|++-+|.+-..+.+..|.. ++
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-Wl 371 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-WL 371 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-HH
Confidence 99999999999999999986666778899999999999999998899999999999999999888754443322221 11
Q ss_pred ccCccccCCCccccCCCCCcEEECCCCcccc---ccchh---------hccccCCCEEEccCCeeecccchhhcCCccCc
Q 039967 336 SVNNISESIPPEIGDSPKLQVLDLSSNNIVG---EIPVQ---------LGKLFSLNKLILNLNQLSGGMPLELGSLIELQ 403 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 403 (445)
......+..+. +.-..++.+++++..+.+ ..|+. -..|+-+.++.=..++....+|..+- ..-.
T Consensus 372 r~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~t 447 (498)
T KOG4237|consen 372 RKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVT 447 (498)
T ss_pred hhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhH
Confidence 12222222221 122346667776665431 12222 13455666655545554435554332 2577
Q ss_pred eeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967 404 YLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 404 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 437 (445)
.|.+.+|.++....+ .+..| .+++++|+|+
T Consensus 448 elyl~gn~~~~vp~~---~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 448 ELYLDGNAITSVPDE---LLRSL-LLDLSNNRIS 477 (498)
T ss_pred HHhcccchhcccCHH---HHhhh-hcccccCcee
Confidence 899999999855444 45667 8899999887
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=2.1e-18 Score=168.69 Aligned_cols=261 Identities=25% Similarity=0.403 Sum_probs=124.9
Q ss_pred CCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEcc
Q 039967 118 SLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLF 197 (445)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 197 (445)
.-..|+++++.++ .+|..+. ++|+.|.+.+|.++ .+|. .+++|++|++++|.++. +|. ..++|+.|++.
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccC---cccccceeecc
Confidence 3445666666665 3444443 35666666666655 3333 23566666666666552 332 13456666666
Q ss_pred CCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCCc
Q 039967 198 NNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVI 277 (445)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 277 (445)
+|.+. .+|.. ...|+.|++++|.+... +. ..++|+.|++++|.+... +. ....|+.|++.+|.+...
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~L- 337 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL- 337 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CC---CcccccccccccCccccc-
Confidence 66554 22321 23455666666655422 11 124566666666655542 21 123455555665555422
Q ss_pred cccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEE
Q 039967 278 PHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVL 357 (445)
Q Consensus 278 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 357 (445)
+. .+.+|++|++++|.+. .+|.. ..+|+.|.+++|.+...+.. ..+|+.|
T Consensus 338 P~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l-----------------------~~~L~~L 387 (788)
T PRK15387 338 PT---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL-----------------------PSGLKEL 387 (788)
T ss_pred cc---cccccceEecCCCccC-CCCCC---CcccceehhhccccccCccc-----------------------ccccceE
Confidence 21 1235666666666555 22321 23455555555554432221 1334555
Q ss_pred ECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967 358 DLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 437 (445)
++++|.+.. .|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|+++ ..|..+.++++|+.|++++|+++
T Consensus 388 dLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 388 IVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred EecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 555555442 2211 234555555555544 23321 124455555555554 34444555555555555555555
Q ss_pred ccCC
Q 039967 438 HKIL 441 (445)
Q Consensus 438 ~~~~ 441 (445)
+.+|
T Consensus 459 ~~~~ 462 (788)
T PRK15387 459 ERTL 462 (788)
T ss_pred chHH
Confidence 4444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=6.7e-18 Score=165.17 Aligned_cols=261 Identities=27% Similarity=0.376 Sum_probs=180.0
Q ss_pred cccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeC
Q 039967 93 CNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172 (445)
Q Consensus 93 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 172 (445)
.+-..|+++++.+. .+|..+. ++|+.|++.+|.++ .+|. ..++|++|++.+|.++ .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 34668899999887 5666564 48999999999998 4553 3589999999999988 45543 478999999
Q ss_pred CCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCcccccc
Q 039967 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSF 252 (445)
Q Consensus 173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 252 (445)
.+|.+. .+|. .+++|+.|.+.+|.+. .+|. ..++|+.|++++|.+... +. ...+|+.|++++|.+..+
T Consensus 270 s~N~L~-~Lp~---lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 270 FSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL 337 (788)
T ss_pred cCCchh-hhhh---chhhcCEEECcCCccc-cccc---cccccceeECCCCccccC-CC---CcccccccccccCccccc
Confidence 999876 3444 2367889999999988 4454 347899999999988743 22 124688899999988764
Q ss_pred ChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccccc-CCCcc
Q 039967 253 VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN-VPKLG 331 (445)
Q Consensus 253 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~L~ 331 (445)
+. ...+|++|++++|.+... +. .+.+|+.|++++|.+. .+|.. ...|+.|++++|.+...+. .++|+
T Consensus 338 -P~---lp~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~ 405 (788)
T PRK15387 338 -PT---LPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVLPSELK 405 (788)
T ss_pred -cc---cccccceEecCCCccCCC-CC---CCcccceehhhccccc-cCccc---ccccceEEecCCcccCCCCcccCCC
Confidence 32 225799999999998843 32 2468899999999988 35543 3578899999888764332 23555
Q ss_pred eEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccc
Q 039967 332 TFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP 393 (445)
Q Consensus 332 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 393 (445)
.|++++|++.. +|.. ..+|+.|++++|.++ .+|..+.+++.|+.|++++|++.+..+
T Consensus 406 ~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 406 ELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred EEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 56666655543 2221 134555555555555 445555555555556665555554333
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=5e-19 Score=162.00 Aligned_cols=161 Identities=24% Similarity=0.278 Sum_probs=93.5
Q ss_pred ccccEEecccCccCCCc----cccccccCCccEEEcCCCcccCCC----CccccccCccceeeccCccccccccCCCcce
Q 039967 261 TSLSELELCTNHLSGVI----PHSIGNLTGLLLLNMCENHLSGPI----PKSFKNLTSVERVLLNQNNLSGKVNVPKLGT 332 (445)
Q Consensus 261 ~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~ 332 (445)
++|+.+++++|.+.... ...+..++.|++|++++|.+.+.. +..+..+++|+.|++++|.+.+...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~------ 210 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA------ 210 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH------
Confidence 45555666555554211 122333445666666655554221 1122233445555555444321100
Q ss_pred EEcccCccccCCCccccCCCCCcEEECCCCccccccchhhcc-----ccCCCEEEccCCeeec----ccchhhcCCccCc
Q 039967 333 FIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGK-----LFSLNKLILNLNQLSG----GMPLELGSLIELQ 403 (445)
Q Consensus 333 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~ 403 (445)
......+..+++|++|++++|.+.+.....+.. .+.|++|++++|.+++ .+...+..+++|+
T Consensus 211 ---------~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~ 281 (319)
T cd00116 211 ---------SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281 (319)
T ss_pred ---------HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc
Confidence 112234566788999999999887543333322 3789999999998752 2334556668899
Q ss_pred eeecCCCcccccc----CccccCC-CCccEEeCCCCcc
Q 039967 404 YLDLSTNKLKSSI----PKSIGNL-LRLCYLDLSNNQF 436 (445)
Q Consensus 404 ~L~l~~~~~~~~~----~~~~~~~-~~L~~l~l~~~~~ 436 (445)
.+++++|.+.+.. +..+... +.|+++++.+++|
T Consensus 282 ~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred EEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 9999999998653 3344444 6899999998876
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=6e-16 Score=152.51 Aligned_cols=181 Identities=26% Similarity=0.440 Sum_probs=94.2
Q ss_pred cccEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeecc
Q 039967 238 SLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLN 317 (445)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 317 (445)
+|+.|++++|.+..+ +..+. ++|+.|++++|.+.. .+..+. ++|+.|++++|.+. .+|..+. +.|+.|+++
T Consensus 242 ~L~~L~Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRITEL-PERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccCcC-ChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence 444555555444432 22221 245555555554442 222221 34555555555544 2222221 245555555
Q ss_pred Cccccccc--cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchh
Q 039967 318 QNNLSGKV--NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE 395 (445)
Q Consensus 318 ~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 395 (445)
+|.+...+ ..++|+.|++.+|.++. +|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|++. .+|..
T Consensus 313 ~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 313 SNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred CCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHh
Confidence 55544322 13456666666665553 333332 56777777777766 444444 257777777777776 44544
Q ss_pred hcCCccCceeecCCCccccccCccc----cCCCCccEEeCCCCccc
Q 039967 396 LGSLIELQYLDLSTNKLKSSIPKSI----GNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 396 ~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~l~l~~~~~~ 437 (445)
+. .+|+.|++++|++. ..|..+ ..++.+..+++.+|+++
T Consensus 386 l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 386 LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 43 36777777777776 344333 33466777777777765
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=1.5e-17 Score=152.14 Aligned_cols=281 Identities=23% Similarity=0.256 Sum_probs=141.8
Q ss_pred EEecCCcCC-CCccccccCCCCCcEEEccCCcccCC----CCccccCCCCCceEEeccCccccccCccccCCCCcCEEeC
Q 039967 98 FYLNNNSLF-NSIPLVLGNLNSLSTMDLSQNQFSGS----IPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDL 172 (445)
Q Consensus 98 l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 172 (445)
+++..+.+. ......+..+..|+.+++.++.++.. ++..+...++++++.+.++.+.. .+..
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~------------ 69 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRG------------ 69 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchH------------
Confidence 344444443 23333445555566666666665321 22233444556666655544321 0000
Q ss_pred CCccccccccccccCCCCCcEEEccCCccCCCCCccccCC---CCcCEEEccCccccCC----CCccccCC-CcccEEEe
Q 039967 173 SENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNL---KSLSALGLHINQLSGV----IPSSIGNL-SSLRALYL 244 (445)
Q Consensus 173 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l 244 (445)
....+..+..+++|+.|+++++.+....+..+..+ ++|+++++++|.+... ....+..+ ++|+.+++
T Consensus 70 -----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 70 -----LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred -----HHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 00111223334444444444444432222222222 2255555555544311 11123344 66777777
Q ss_pred eCcccccc----ChhhhcccccccEEecccCccCCCcc----ccccccCCccEEEcCCCcccCCC----CccccccCccc
Q 039967 245 YNNGLYSF----VPEEIRYLTSLSELELCTNHLSGVIP----HSIGNLTGLLLLNMCENHLSGPI----PKSFKNLTSVE 312 (445)
Q Consensus 245 ~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~ 312 (445)
++|.+... ....+..+++|++|++++|.+..... ..+...++|++|++++|.+.+.. ...+..+++|+
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 77766521 22344555677778877777653221 22344467888888888765332 23344556677
Q ss_pred eeeccCccccccccCCCcceEEcccCccccCCCccc-cCCCCCcEEECCCCccccc----cchhhccccCCCEEEccCCe
Q 039967 313 RVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEI-GDSPKLQVLDLSSNNIVGE----IPVQLGKLFSLNKLILNLNQ 387 (445)
Q Consensus 313 ~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~ 387 (445)
.|++++|.+.+... ......+ ...+.|+.|++++|.+++. .+..+..+++|+.+++++|+
T Consensus 225 ~L~ls~n~l~~~~~---------------~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 225 VLNLGDNNLTDAGA---------------AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred EEecCCCcCchHHH---------------HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 77776665542100 0000000 1236788888888877632 33445566788888888888
Q ss_pred eecc----cchhhcCC-ccCceeecCCCc
Q 039967 388 LSGG----MPLELGSL-IELQYLDLSTNK 411 (445)
Q Consensus 388 ~~~~----~~~~~~~~-~~L~~L~l~~~~ 411 (445)
+... ....+... +.|+++++.++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 290 FGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 7633 33344444 678888887765
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=3.2e-15 Score=147.42 Aligned_cols=245 Identities=26% Similarity=0.464 Sum_probs=130.8
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEc
Q 039967 117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSL 196 (445)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 196 (445)
.+...|+++++.++ .+|..+. ++++.|++.+|.+. .+|..+. ++|++|++++|.+. .+|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 34556666666665 3443332 45666677766666 3444332 46677777766655 3444332 35666777
Q ss_pred cCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccCCC
Q 039967 197 FNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGV 276 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 276 (445)
++|.+. .+|..+. .+|+.|++++|.+. ..+..+. ++|+.|++++|.+... +..+ .++|+.|++++|.+..
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-cccc--hhhHHHHHhcCCcccc-
Confidence 766665 3343332 35666777666665 2333222 3667777777666553 2222 1356666776666653
Q ss_pred ccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCcccccccc--CCCcceEEcccCccccCCCccccCCCCC
Q 039967 277 IPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN--VPKLGTFIISVNNISESIPPEIGDSPKL 354 (445)
Q Consensus 277 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L 354 (445)
.+..+ .++|+.|++++|.+.. +|..+. ++|+.|++++|.+...+. .+.|+.|++++|++.. +|..+. +.|
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~-LP~~l~--~sL 390 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN-LPENLP--AAL 390 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCC-CCHhHH--HHH
Confidence 22222 2566777777776653 443332 466666666666542211 3455556666555542 233222 246
Q ss_pred cEEECCCCccccccchhh----ccccCCCEEEccCCeee
Q 039967 355 QVLDLSSNNIVGEIPVQL----GKLFSLNKLILNLNQLS 389 (445)
Q Consensus 355 ~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~ 389 (445)
+.|++++|.+. .+|..+ ..++.+..+++.+|++.
T Consensus 391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 66666666665 333332 22355666666666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=9e-18 Score=128.98 Aligned_cols=164 Identities=33% Similarity=0.574 Sum_probs=113.0
Q ss_pred cCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCC
Q 039967 27 IGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLF 106 (445)
Q Consensus 27 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~ 106 (445)
+.++.+++.|.+++|.++ ..|..++.+.+|++|++.+|++. ..|..++.++.|+.++++-+..
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl--------------- 91 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL--------------- 91 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh---------------
Confidence 344556666666666666 44445666666666666666665 5666666666666655543322
Q ss_pred CCccccccCCCCCcEEEccCCcccC-CCCccccCCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccc
Q 039967 107 NSIPLVLGNLNSLSTMDLSQNQFSG-SIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSF 185 (445)
Q Consensus 107 ~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 185 (445)
...|+.|+.++.|++||+..|++.+ ..|..|-.|..|+-|.+.+|.+. ..|..++.+.+|+.|.+.+|.+. .+|..+
T Consensus 92 ~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkei 169 (264)
T KOG0617|consen 92 NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEI 169 (264)
T ss_pred hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHH
Confidence 2567777888888888888777654 46777777778888888888776 67777788888888888888766 577777
Q ss_pred cCCCCCcEEEccCCccCCCCCcccc
Q 039967 186 GNLSSLTLMSLFNNSLSGSLPPILG 210 (445)
Q Consensus 186 ~~l~~L~~L~l~~~~~~~~~~~~~~ 210 (445)
+.++.|++|.+.+|+++ .+|..+.
T Consensus 170 g~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred HHHHHHHHHhcccceee-ecChhhh
Confidence 88888888888888877 4454343
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=8.3e-17 Score=123.71 Aligned_cols=156 Identities=34% Similarity=0.533 Sum_probs=92.4
Q ss_pred CCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEE
Q 039967 5 SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVL 84 (445)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 84 (445)
+++++++|.++.|+++.++ ..++.+.+|+.|++++|.+. ..|..++.++.|++|+++.|.+. ..|.+|+.++.|+++
T Consensus 31 ~~s~ITrLtLSHNKl~~vp-pnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVP-PNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeecC-CcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4455566666666665553 34566666666666666665 55556666666666666655554 456666666666666
Q ss_pred EecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCC
Q 039967 85 ALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNL 164 (445)
Q Consensus 85 ~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 164 (445)
++.++... ....|..|..|..|+.|.++.|++. .+|..++++.+|+.|.+++|.+. .+|..++.+
T Consensus 108 dltynnl~-------------e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~l 172 (264)
T KOG0617|consen 108 DLTYNNLN-------------ENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDL 172 (264)
T ss_pred hccccccc-------------cccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHH
Confidence 55554331 2244555556666666666666665 55556666666666666666554 455666666
Q ss_pred CCcCEEeCCCcccc
Q 039967 165 KSLLQLDLSENQLI 178 (445)
Q Consensus 165 ~~L~~L~l~~~~~~ 178 (445)
.+|+.|.+.+|+++
T Consensus 173 t~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 173 TRLRELHIQGNRLT 186 (264)
T ss_pred HHHHHHhcccceee
Confidence 66666666666655
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=5.9e-12 Score=108.30 Aligned_cols=236 Identities=19% Similarity=0.209 Sum_probs=107.5
Q ss_pred cCCCCcCEEeCCCccccc----cccccccCCCCCcEEEccCCccC---CCCC-------ccccCCCCcCEEEccCccccC
Q 039967 162 GNLKSLLQLDLSENQLIG----SIPLSFGNLSSLTLMSLFNNSLS---GSLP-------PILGNLKSLSALGLHINQLSG 227 (445)
Q Consensus 162 ~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~---~~~~-------~~~~~l~~L~~L~l~~~~~~~ 227 (445)
..+..+..+++++|.+.. .....+...+.|+...+++.--. ...| ..+..+|+|++++++.|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 345677788888877542 12233455566777666553211 1111 123344566666666666543
Q ss_pred CCCcc----ccCCCcccEEEeeCccccccChhhh-------------cccccccEEecccCccCCCcc----ccccccCC
Q 039967 228 VIPSS----IGNLSSLRALYLYNNGLYSFVPEEI-------------RYLTSLSELELCTNHLSGVIP----HSIGNLTG 286 (445)
Q Consensus 228 ~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~ 286 (445)
..+.. +.++..|+.|++.+|.+.......+ ...+.|+.+...+|++-.... ..+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 33222 2345666666666665543222221 122344444444444432211 12233344
Q ss_pred ccEEEcCCCcccCC----CCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCC
Q 039967 287 LLLLNMCENHLSGP----IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362 (445)
Q Consensus 287 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (445)
|+.+.+..|++... ....+..|++|+.|+|++|.++.... ..+...+..+++|+++++++|
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs---------------~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS---------------VALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH---------------HHHHHHhcccchheeeccccc
Confidence 44444444443322 11234444444444444444331110 012223334455555555555
Q ss_pred ccccccchhh-----ccccCCCEEEccCCeeec----ccchhhcCCccCceeecCCCcc
Q 039967 363 NIVGEIPVQL-----GKLFSLNKLILNLNQLSG----GMPLELGSLIELQYLDLSTNKL 412 (445)
Q Consensus 363 ~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 412 (445)
.+.......+ ...|+|+.+.+.+|.++. .+..+....|.|+.|+|++|.+
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 5554433332 234555555555555531 1112233445555555555555
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1e-11 Score=109.88 Aligned_cols=210 Identities=25% Similarity=0.245 Sum_probs=102.7
Q ss_pred CCCCcCEEEccCccccCCCC-ccccCCCcccEEEeeCccccccC--hhhhcccccccEEecccCccCCCccc-cccccCC
Q 039967 211 NLKSLSALGLHINQLSGVIP-SSIGNLSSLRALYLYNNGLYSFV--PEEIRYLTSLSELELCTNHLSGVIPH-SIGNLTG 286 (445)
Q Consensus 211 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~ 286 (445)
++.+|+++.++++.+..... .-...+++++.|+++.|-+..+. ......+|+|+.|+++.|.+...... ....++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34555556665555442221 12234555556666555444331 12334455555555555554421111 1123344
Q ss_pred ccEEEcCCCcccCC-CCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccc
Q 039967 287 LLLLNMCENHLSGP-IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIV 365 (445)
Q Consensus 287 L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 365 (445)
++.|.++.|+++.. +...... +|+++.|++.+|...........-+..|++||+++|.+.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~-------------------fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLT-------------------FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHh-------------------CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 44444444444311 1112233 555555555555321111222233456777777777655
Q ss_pred ccc-chhhccccCCCEEEccCCeeeccc-chh-----hcCCccCceeecCCCccccc-cCccccCCCCccEEeCCCCccc
Q 039967 366 GEI-PVQLGKLFSLNKLILNLNQLSGGM-PLE-----LGSLIELQYLDLSTNKLKSS-IPKSIGNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 366 ~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~ 437 (445)
+.. ....+.++.|+.|+++.|++.+.- |.. ...+++|++|+++.|++.+- ....+..+++|+.+.+..|+++
T Consensus 260 ~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 260 DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 322 123456677777777777765321 111 34567777777777777421 2234455667777777777766
Q ss_pred cc
Q 039967 438 HK 439 (445)
Q Consensus 438 ~~ 439 (445)
.+
T Consensus 340 ~e 341 (505)
T KOG3207|consen 340 KE 341 (505)
T ss_pred cc
Confidence 43
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=2.3e-11 Score=102.58 Aligned_cols=129 Identities=31% Similarity=0.358 Sum_probs=69.4
Q ss_pred CCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCcc
Q 039967 285 TGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNI 364 (445)
Q Consensus 285 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 364 (445)
+.|+.+|+++|.++ .+.+.+.-.|.++.|+++.|.+. .. ..++.+++|+.||+++|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-------------------~v--~nLa~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-------------------TV--QNLAELPQLQLLDLSGNLL 341 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-------------------ee--hhhhhcccceEeecccchh
Confidence 44555555555554 34444444455555555544432 11 1244556666666666665
Q ss_pred ccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcccccc-CccccCCCCccEEeCCCCcccc
Q 039967 365 VGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSI-PKSIGNLLRLCYLDLSNNQFGH 438 (445)
Q Consensus 365 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~ 438 (445)
+ ....+=.++-++++|.+++|.+... ..++.+=+|..||+++|++.... ...+.++|+|+.+.+.+||+.+
T Consensus 342 s-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 342 A-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred H-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 5 3333334566666666666666411 23444446666667666665332 2456666777777777766653
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=9.3e-11 Score=94.50 Aligned_cols=100 Identities=32% Similarity=0.284 Sum_probs=41.5
Q ss_pred CcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhh-ccccCCCEEEccCCeeeccc-chhhcCCccCceee
Q 039967 329 KLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQL-GKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLD 406 (445)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 406 (445)
+|+.|++++|.+... +.+..++.|++|++++|.++...+ .+ ..+++|++|++++|++.+.. ...+..+++|++|+
T Consensus 43 ~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 43 KLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp T--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred CCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 344444444444322 345667888888888888874433 33 35788888888888886432 24566788888888
Q ss_pred cCCCccccccC---ccccCCCCccEEeC
Q 039967 407 LSTNKLKSSIP---KSIGNLLRLCYLDL 431 (445)
Q Consensus 407 l~~~~~~~~~~---~~~~~~~~L~~l~l 431 (445)
+.+|++..... ..+..+|+|+.||-
T Consensus 120 L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 120 LEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ccCCcccchhhHHHHHHHHcChhheeCC
Confidence 88888874422 23467888887654
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=7.2e-12 Score=107.75 Aligned_cols=233 Identities=18% Similarity=0.174 Sum_probs=163.3
Q ss_pred cCCCCCcEEeccCCcCCCC----CCcccCCCCCCcEEeccCcc---cCCCCCc-------cccCCCCCcEEEecCccccc
Q 039967 4 SSFPHLVHLNLSFNILFGI----IPPQIGNLSNLQYLDLGSNQ---LSGVIPL-------EIGHLNQLRILYFDVNQLHG 69 (445)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~---~~~~~~~-------~l~~~~~L~~L~l~~~~~~~ 69 (445)
..+..++.++|++|.+... ....+.+.+.|+..+++.-. ..+..|+ ++..+++|+.|++|+|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3567889999999988754 34556667788888887642 2223333 34577899999999999885
Q ss_pred CCCccc----ccCCCccEEEecCcccccccceEEecCCcCCCCccc-------------cccCCCCCcEEEccCCcccCC
Q 039967 70 SIPLEI----GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-------------VLGNLNSLSTMDLSQNQFSGS 132 (445)
Q Consensus 70 ~~~~~~----~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~ 132 (445)
.-++.+ +++. +|++|++.+|.+...--. ..+.-+.|+++.+++|.+.+.
T Consensus 107 ~g~~~l~~ll~s~~--------------~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 107 KGIRGLEELLSSCT--------------DLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred cchHHHHHHHHhcc--------------CHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 444444 3333 556666666655332111 234457899999999988743
Q ss_pred C----CccccCCCCCceEEeccCcccc----ccCccccCCCCcCEEeCCCcccccc----ccccccCCCCCcEEEccCCc
Q 039967 133 I----PLSLGNLSNLDKLYLYSNSFSG----SIPSIIGNLKSLLQLDLSENQLIGS----IPLSFGNLSSLTLMSLFNNS 200 (445)
Q Consensus 133 ~----~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~ 200 (445)
. ...|...+.|+.+.+..|.+.. .....+..+++|+.||+.+|.++.. +...+..++.|+.+.+++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 2 2346777999999999988752 2345678899999999999987643 34556788999999999998
Q ss_pred cCCCCCccc-----cCCCCcCEEEccCccccCC----CCccccCCCcccEEEeeCcccc
Q 039967 201 LSGSLPPIL-----GNLKSLSALGLHINQLSGV----IPSSIGNLSSLRALYLYNNGLY 250 (445)
Q Consensus 201 ~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 250 (445)
+.......+ ...|.|+++.+.+|.+... ........+.|+.|++++|.+.
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 764333222 3468999999999987532 2234455789999999999883
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=1.4e-10 Score=116.82 Aligned_cols=128 Identities=34% Similarity=0.401 Sum_probs=68.4
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCceEEeccCc--cccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEE
Q 039967 117 NSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNS--FSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLM 194 (445)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 194 (445)
...+...+.++.+. ..+.... .++|++|-+.++. +....+..|..+|.|+.||+++|.-...+|..++.+-+||.|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 44455555555443 2222222 2356666665554 332333345556666666666655444566666666666666
Q ss_pred EccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCc
Q 039967 195 SLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN 247 (445)
Q Consensus 195 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 247 (445)
++.+..+. .+|..+.++..|.+|++..+......+.....+.+|++|.+..-
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 66666665 55666666666666666655443233333344566666665543
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.3e-11 Score=106.02 Aligned_cols=207 Identities=22% Similarity=0.194 Sum_probs=104.3
Q ss_pred CCCCCcEEeccCCcCCCCCC-cccCCCCCCcEEeccCcccCCCC--CccccCCCCCcEEEecCcccccCCCcc-cccCCC
Q 039967 5 SFPHLVHLNLSFNILFGIIP-PQIGNLSNLQYLDLGSNQLSGVI--PLEIGHLNQLRILYFDVNQLHGSIPLE-IGQLSL 80 (445)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~ 80 (445)
++.+||.+.|.++.+..... .....|++++.|+++.|-+.... .....++|+|+.|+++.|.+....... -..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34556666666555443321 23444666666666666443211 122235566666666666544221111 124455
Q ss_pred ccEEEecCcccccccceEEecCCcCCC-CccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccC-
Q 039967 81 INVLALCHNYFVCNLANFYLNNNSLFN-SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIP- 158 (445)
Q Consensus 81 L~~l~l~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~- 158 (445)
|+.+.+++| .++. ++...+..+|+|+.|++.+|...........-+..|+.|++++|.+. ..+
T Consensus 199 lK~L~l~~C--------------Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~ 263 (505)
T KOG3207|consen 199 LKQLVLNSC--------------GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQ 263 (505)
T ss_pred hheEEeccC--------------CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccc
Confidence 555555554 4332 23334555666777777666321122223344456666677666654 222
Q ss_pred -ccccCCCCcCEEeCCCcccccc-cccc-----ccCCCCCcEEEccCCccCC-CCCccccCCCCcCEEEccCcccc
Q 039967 159 -SIIGNLKSLLQLDLSENQLIGS-IPLS-----FGNLSSLTLMSLFNNSLSG-SLPPILGNLKSLSALGLHINQLS 226 (445)
Q Consensus 159 -~~~~~l~~L~~L~l~~~~~~~~-~~~~-----l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~ 226 (445)
...+.++.|+.|+++.|.+..+ .|+. ...+++|+.|.+..|.+.+ .....+..+++|..+.+..+.+.
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 3345666667777666665432 2221 2456677777777776631 11122344566666666666554
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=6e-11 Score=100.09 Aligned_cols=205 Identities=20% Similarity=0.147 Sum_probs=126.3
Q ss_pred cccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCc-cccccChhhhccc
Q 039967 182 PLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNN-GLYSFVPEEIRYL 260 (445)
Q Consensus 182 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~ 260 (445)
|-.+..+.+|+.+.++.+.-..+ -.....-|.|+++.+.+..++... .+-..+.+...-.... ...+........+
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~--~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVP--SLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred ccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccccc--cccchhhhcCccCCCCCccCCceEEecchH
Confidence 33344556777777776654321 122223477777777665543211 1111111111100000 0111111223345
Q ss_pred ccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccccccccCCCcceEEcccCcc
Q 039967 261 TSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNI 340 (445)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~ 340 (445)
+.|+++++++|.+. ...+.+.-.+.++.|+++.|++... +.++.+++|+.|++++|.+.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls------------------ 342 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA------------------ 342 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH------------------
Confidence 67889999999887 4456777889999999999988732 22677788888888887664
Q ss_pred ccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeeccc-chhhcCCccCceeecCCCcccc
Q 039967 341 SESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLDLSTNKLKS 414 (445)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~ 414 (445)
.+..+-..+.+++.|.+++|.+. ..+++.++-+|..|++++|++.... ...++++|.|+.+.+.+|++..
T Consensus 343 --~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 343 --ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred --hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 33345556678888888888875 2346778888888888888886332 2467888888888888888863
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=4e-10 Score=106.16 Aligned_cols=175 Identities=37% Similarity=0.546 Sum_probs=80.2
Q ss_pred CcccEEEeeCccccccChhhhcccc-cccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceee
Q 039967 237 SSLRALYLYNNGLYSFVPEEIRYLT-SLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVL 315 (445)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 315 (445)
+.++.+++.++.+... +....... +|+.|+++++.+.. .+..+..++.|+.|++++|++. .++......+.|+.++
T Consensus 116 ~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccC-ccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 4455555555555442 22222332 55566665555542 2234455556666666666555 3333333455555555
Q ss_pred ccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchh
Q 039967 316 LNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLE 395 (445)
Q Consensus 316 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 395 (445)
+++|++... +........|+++.+++|.+. ..+..+.++..+..+.+.++++. ..+..
T Consensus 193 ls~N~i~~l--------------------~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 193 LSGNKISDL--------------------PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred ccCCccccC--------------------chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence 555555422 222122233444444444322 23333444444444444444443 22334
Q ss_pred hcCCccCceeecCCCccccccCccccCCCCccEEeCCCCcccc
Q 039967 396 LGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH 438 (445)
Q Consensus 396 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 438 (445)
++.+++++.|++++|.++.... +..+.+++.++++++.++.
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence 4444445555555555543222 4444555555555554443
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=3.1e-10 Score=114.34 Aligned_cols=106 Identities=33% Similarity=0.425 Sum_probs=71.8
Q ss_pred ccceEEecCCc--CCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCcCEEe
Q 039967 94 NLANFYLNNNS--LFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLD 171 (445)
Q Consensus 94 ~L~~l~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 171 (445)
+|++|-+.++. +.......|..++.|++||+++|.-...+|+.++.+-+|++|++.++.+. .+|..+.+++.|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45566665554 33344444677788888888876554467777887888888888887777 6777777888888888
Q ss_pred CCCccccccccccccCCCCCcEEEccCCc
Q 039967 172 LSENQLIGSIPLSFGNLSSLTLMSLFNNS 200 (445)
Q Consensus 172 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 200 (445)
+..+......+.....+++||+|.+....
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccc
Confidence 77766443444545557777777776554
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.8e-09 Score=71.45 Aligned_cols=59 Identities=44% Similarity=0.540 Sum_probs=32.9
Q ss_pred CCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCCCCc
Q 039967 377 SLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQ 435 (445)
Q Consensus 377 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 435 (445)
+|++|++++|++....+..|.++++|++|++++|++....+.+|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555553333455555555555555555555555555555566666555554
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=1.6e-09 Score=87.35 Aligned_cols=106 Identities=31% Similarity=0.356 Sum_probs=23.5
Q ss_pred CCCCCcEEEccCCcccCCCCcccc-CCCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccc-cCCCCCc
Q 039967 115 NLNSLSTMDLSQNQFSGSIPLSLG-NLSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSF-GNLSSLT 192 (445)
Q Consensus 115 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~ 192 (445)
+...++.|++.++.++.+ . .++ .+.+|+.|++++|.+.. + ..+..+++|++|++++|.+... ...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccc-c-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 334455566666655522 1 232 34555556666555542 1 2344555555555555555432 2222 2355555
Q ss_pred EEEccCCccCCCCC-ccccCCCCcCEEEccCccc
Q 039967 193 LMSLFNNSLSGSLP-PILGNLKSLSALGLHINQL 225 (445)
Q Consensus 193 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 225 (445)
+|.+++|.+..... ..+..+++|+.|++.+|++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 55555555542111 2233444444444444444
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.86 E-value=5.1e-09 Score=103.38 Aligned_cols=112 Identities=31% Similarity=0.501 Sum_probs=88.9
Q ss_pred cceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCC
Q 039967 330 LGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLST 409 (445)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 409 (445)
++.|++.++.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67778888888777777888888888888888888878888888888888888888888878888888888888888888
Q ss_pred CccccccCccccC-CCCccEEeCCCCcccccCC
Q 039967 410 NKLKSSIPKSIGN-LLRLCYLDLSNNQFGHKIL 441 (445)
Q Consensus 410 ~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~ 441 (445)
|++.+..|..+.. ...+..+++.+|+.....|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 8888777777754 3466677888777654443
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=3.1e-09 Score=70.32 Aligned_cols=61 Identities=39% Similarity=0.528 Sum_probs=45.9
Q ss_pred CCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCcc
Q 039967 352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKL 412 (445)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 412 (445)
|+|++|++++|.++...+..|.++++|++|++++|.+....+..|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677788888877766666777788888888888877756666777888888888887764
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.84 E-value=3.9e-09 Score=104.15 Aligned_cols=92 Identities=35% Similarity=0.545 Sum_probs=87.2
Q ss_pred CCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccccCCCCccEEeCC
Q 039967 353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLS 432 (445)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 432 (445)
.++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+..|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCC
Q 039967 433 NNQFGHKILVEL 444 (445)
Q Consensus 433 ~~~~~~~~~~~~ 444 (445)
+|+++|++|..+
T Consensus 499 ~N~l~g~iP~~l 510 (623)
T PLN03150 499 GNSLSGRVPAAL 510 (623)
T ss_pred CCcccccCChHH
Confidence 999999999754
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.81 E-value=6.1e-09 Score=98.13 Aligned_cols=180 Identities=39% Similarity=0.550 Sum_probs=105.4
Q ss_pred ccCCCCCcEEEccCCcccCCCCccccCCC-CCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCC
Q 039967 113 LGNLNSLSTMDLSQNQFSGSIPLSLGNLS-NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSL 191 (445)
Q Consensus 113 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 191 (445)
+...+.++.+++..+.++ ..+....... +|+.++++++.+. ..+..+..++.|+.|++++|++.. .+......+.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhh
Confidence 344466777777777776 3444455553 7777777777766 444556677777777777777663 34433366777
Q ss_pred cEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhcccccccEEecccC
Q 039967 192 TLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTN 271 (445)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 271 (445)
+.|.++++.+. ..|........|+++.++++... .....+....++..+.+.++.+.. .+..+..++.+++|++++|
T Consensus 189 ~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 189 NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccc
Confidence 77777777776 34443334445677777666422 223344555566666655555443 1344555556666666666
Q ss_pred ccCCCccccccccCCccEEEcCCCcccCC
Q 039967 272 HLSGVIPHSIGNLTGLLLLNMCENHLSGP 300 (445)
Q Consensus 272 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 300 (445)
.+..... +....+++.++++++.+...
T Consensus 266 ~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 266 QISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccc--ccccCccCEEeccCcccccc
Confidence 6653332 55556666666666655533
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=2.7e-10 Score=104.38 Aligned_cols=170 Identities=36% Similarity=0.517 Sum_probs=96.5
Q ss_pred cEEEeeCccccccChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCcccCCCCccccccCccceeeccCc
Q 039967 240 RALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQN 319 (445)
Q Consensus 240 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 319 (445)
...+++.|.+.. .+...+.+..|+.+.+..|.+. ..+..+..+..|++++++.|++. ..|..++.++ |+.+.+++|
T Consensus 78 ~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 445555565544 4455555666677777666665 45556667777777777777766 4454444433 555666665
Q ss_pred cccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCC
Q 039967 320 NLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 399 (445)
Q Consensus 320 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 399 (445)
++. .+|..++..+.|..||.+.|.+. ..|..++.+.+|+.|.+..|++. .+|+.++ .
T Consensus 154 kl~--------------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~ 210 (722)
T KOG0532|consen 154 KLT--------------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-S 210 (722)
T ss_pred ccc--------------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-C
Confidence 554 34444445555555555555554 44445555555555555555555 4444444 2
Q ss_pred ccCceeecCCCccccccCccccCCCCccEEeCCCCccc
Q 039967 400 IELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFG 437 (445)
Q Consensus 400 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 437 (445)
-.|..||++.|+++ .+|..|.++..|++|-+.+||+.
T Consensus 211 LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 211 LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 34555555555554 45555555555555555555554
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=4.5e-10 Score=102.92 Aligned_cols=172 Identities=31% Similarity=0.463 Sum_probs=108.2
Q ss_pred CCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEec
Q 039967 8 HLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALC 87 (445)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 87 (445)
.-..++++.|.+..+ |..+..+-.|+.+.++.|.+. ..|.+++++..|++++++.|++. ..|..+-.++
T Consensus 76 dt~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-------- 144 (722)
T KOG0532|consen 76 DTVFADLSRNRFSEL-PEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-------- 144 (722)
T ss_pred chhhhhccccccccC-chHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--------
Confidence 344556666666655 334555666777777777776 66667777777777777777765 4555554444
Q ss_pred CcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccccCccccCCCCc
Q 039967 88 HNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGSIPSIIGNLKSL 167 (445)
Q Consensus 88 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 167 (445)
|+.+.+++|.+. ..|..++..+.|.+||.+.|++. ..|..+..+..|+.+++..|.+. .+|..+. .-.|
T Consensus 145 -------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpL 213 (722)
T KOG0532|consen 145 -------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPL 213 (722)
T ss_pred -------ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCce
Confidence 344444444433 45555666667777777777666 45666666677777777666665 4455454 3456
Q ss_pred CEEeCCCccccccccccccCCCCCcEEEccCCccC
Q 039967 168 LQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLS 202 (445)
Q Consensus 168 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 202 (445)
..||++.|++. .+|..|..++.|++|.+.+|.+.
T Consensus 214 i~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 214 IRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 66777776665 56666677777777777776665
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=8.6e-10 Score=93.14 Aligned_cols=172 Identities=20% Similarity=0.159 Sum_probs=100.7
Q ss_pred cccEEEeeCcccccc-ChhhhcccccccEEecccCccCCCccccccccCCccEEEcCCCc-ccCC-CCccccccCcccee
Q 039967 238 SLRALYLYNNGLYSF-VPEEIRYLTSLSELELCTNHLSGVIPHSIGNLTGLLLLNMCENH-LSGP-IPKSFKNLTSVERV 314 (445)
Q Consensus 238 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L 314 (445)
.|+.++++.-.++.. ....+..|.+|+.|.+.++.+.+.....++.-.+|+.++++.+. ++.. ..-.+..|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 455555555444321 22344555566666666665554444445555566666666552 2211 12234556666666
Q ss_pred eccCcccccccc-------CCCcceEEcccCccc---cCCCccccCCCCCcEEECCCCc-cccccchhhccccCCCEEEc
Q 039967 315 LLNQNNLSGKVN-------VPKLGTFIISVNNIS---ESIPPEIGDSPKLQVLDLSSNN-IVGEIPVQLGKLFSLNKLIL 383 (445)
Q Consensus 315 ~l~~~~~~~~~~-------~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l 383 (445)
++++|.+..... -+.|..|+++++.-. .....-...||+|.+||+++|. ++......|.+++.|++|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 666665432211 335556666654321 1122234578999999999886 55555567788999999999
Q ss_pred cCCeeecccch---hhcCCccCceeecCCCc
Q 039967 384 NLNQLSGGMPL---ELGSLIELQYLDLSTNK 411 (445)
Q Consensus 384 ~~~~~~~~~~~---~~~~~~~L~~L~l~~~~ 411 (445)
+.|-. ..|+ .+...|+|.+||+.||-
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 99865 3343 45778999999998874
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=3.1e-08 Score=83.91 Aligned_cols=196 Identities=22% Similarity=0.136 Sum_probs=106.0
Q ss_pred CCcCEEEccCccccCC--CCccccCCCcccEEEeeCccccccChhhhcccccccEEecccCccC-CCccccccccCCccE
Q 039967 213 KSLSALGLHINQLSGV--IPSSIGNLSSLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLS-GVIPHSIGNLTGLLL 289 (445)
Q Consensus 213 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~ 289 (445)
..++++++.+|.+++. ....+..+|.|++|+++.|++...+...-....+|+.+.+.+..+. ......+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 4444455555544321 1112334455555555555544322111112334555555444332 111123344455555
Q ss_pred EEcCCCcccCCCCc---cccccCccceeeccCccccccc-------cCCCcceEEcccCccccC-CCccccCCCCCcEEE
Q 039967 290 LNMCENHLSGPIPK---SFKNLTSVERVLLNQNNLSGKV-------NVPKLGTFIISVNNISES-IPPEIGDSPKLQVLD 358 (445)
Q Consensus 290 L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~-------~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ 358 (445)
+.++.|.......+ .-.-.+.+++++..+|....+. .+|++..+.++.|++... ..+.....|.+..|.
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 55555532211110 1112235666666666543221 288999999999887644 344566678888899
Q ss_pred CCCCcccccc-chhhccccCCCEEEccCCeeecccch------hhcCCccCceeecC
Q 039967 359 LSSNNIVGEI-PVQLGKLFSLNKLILNLNQLSGGMPL------ELGSLIELQYLDLS 408 (445)
Q Consensus 359 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~ 408 (445)
++.+.+.+.. ...+.+++.|..|.++++++.+.+.. -++.++++++|+=+
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 9998887542 25678899999999999988543322 14567888887644
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.47 E-value=1.7e-09 Score=95.53 Aligned_cols=289 Identities=17% Similarity=0.119 Sum_probs=146.0
Q ss_pred CCCceEEeccCcccc--ccCccccCCCCcCEEeCCCccccc-cccccc-cCCCCCcEEEccCCc-cCCCC-CccccCCCC
Q 039967 141 SNLDKLYLYSNSFSG--SIPSIIGNLKSLLQLDLSENQLIG-SIPLSF-GNLSSLTLMSLFNNS-LSGSL-PPILGNLKS 214 (445)
Q Consensus 141 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l-~~l~~L~~L~l~~~~-~~~~~-~~~~~~l~~ 214 (445)
..||.+.+.++.-.. ..-....++|++++|++.+|.... ..-..+ ..+++|+++.+..|. ++... ......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 366777777765321 122234567888888888876321 111111 456778888887743 33221 123346788
Q ss_pred cCEEEccCccccCC--CCccccCCCcccEEEeeCcccccc--ChhhhcccccccEEecccCccC-CCcc-ccccccCCcc
Q 039967 215 LSALGLHINQLSGV--IPSSIGNLSSLRALYLYNNGLYSF--VPEEIRYLTSLSELELCTNHLS-GVIP-HSIGNLTGLL 288 (445)
Q Consensus 215 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~-~~~~-~~l~~~~~L~ 288 (445)
|+.+++++|..... ...-.+++..++.+...||.-... ....-..+..+..+++.+|... +... ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 88888888764211 112334566667776666643221 1111233445666666666332 2211 1123456778
Q ss_pred EEEcCCCcc-cCCCCccc-cccCccceeeccCcc-cccc------ccCCCcceEEcccCccccC--CCccccCCCCCcEE
Q 039967 289 LLNMCENHL-SGPIPKSF-KNLTSVERVLLNQNN-LSGK------VNVPKLGTFIISVNNISES--IPPEIGDSPKLQVL 357 (445)
Q Consensus 289 ~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~-~~~~------~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L 357 (445)
+++.+++.- .+.....+ .++.+|+.+.+.+|+ +++. .+++.|+.+++..+..... +...-.+|+.|+++
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 888887743 32222333 467788888887775 2211 1255555555555443221 11122355666666
Q ss_pred ECCCCc-cccccchhh----ccccCCCEEEccCCeee-cccchhhcCCccCceeecCCCc-cccccCccc-cCCCCccEE
Q 039967 358 DLSSNN-IVGEIPVQL----GKLFSLNKLILNLNQLS-GGMPLELGSLIELQYLDLSTNK-LKSSIPKSI-GNLLRLCYL 429 (445)
Q Consensus 358 ~l~~~~-~~~~~~~~~----~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~l 429 (445)
.++.|. +++.....+ .....++.+.+++|+.. +...+.+..+++|+.+++.+|+ +++.....| .++|++++.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 666654 333311122 23455666666666553 1222344555666666666664 222333334 245555443
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.44 E-value=3.5e-08 Score=93.17 Aligned_cols=127 Identities=31% Similarity=0.350 Sum_probs=58.8
Q ss_pred CCCCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEE
Q 039967 140 LSNLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALG 219 (445)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 219 (445)
+..++.+.+..+.+. ..-..+..+.+|+.+++.++.+..+. ..+..+++|++|++++|.|+.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 344444455555544 22233445566666666666654321 1144555666666666655532 1233444455555
Q ss_pred ccCccccCCCCccccCCCcccEEEeeCccccccCh-hhhcccccccEEecccCcc
Q 039967 220 LHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVP-EEIRYLTSLSELELCTNHL 273 (445)
Q Consensus 220 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 273 (445)
+.+|.+.... .+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+
T Consensus 147 l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 147 LSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred eccCcchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 5555554221 22234455555555554444322 1 23334444444444433
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.7e-09 Score=90.17 Aligned_cols=180 Identities=20% Similarity=0.193 Sum_probs=115.5
Q ss_pred CCcEEeccCcccCC-CCCccccCCCCCcEEEecCcccccCCCcccccCCCccEEEecCcccccccceEEecCCcCCCCcc
Q 039967 32 NLQYLDLGSNQLSG-VIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIP 110 (445)
Q Consensus 32 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~ 110 (445)
+|+.++++...|+. .....+++|++|+.|.+.+..+.+.+...+++..+|..++++.+... + .....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~---t---------~n~~~ 253 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF---T---------ENALQ 253 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc---c---------hhHHH
Confidence 47777777766652 22234567777777777777776666666777776666666554321 0 11233
Q ss_pred ccccCCCCCcEEEccCCcccCCCC-ccccCC-CCCceEEeccCccc---cccCccccCCCCcCEEeCCCccc-ccccccc
Q 039967 111 LVLGNLNSLSTMDLSQNQFSGSIP-LSLGNL-SNLDKLYLYSNSFS---GSIPSIIGNLKSLLQLDLSENQL-IGSIPLS 184 (445)
Q Consensus 111 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l-~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~ 184 (445)
..+..|..|..|+++||....... ..+... ++|..|+++|+.-. .....-...+|+|-.||+++|-. .......
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~ 333 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 333 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH
Confidence 457788899999999987653322 122222 68888888887521 11222345789999999998753 3333445
Q ss_pred ccCCCCCcEEEccCCccCCCCCcc---ccCCCCcCEEEccCccc
Q 039967 185 FGNLSSLTLMSLFNNSLSGSLPPI---LGNLKSLSALGLHINQL 225 (445)
Q Consensus 185 l~~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~ 225 (445)
|.+++.|++|.++.|... .|.. +.+.|.|..|++.++--
T Consensus 334 ~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 678899999999988653 3332 45678899999887643
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=6.6e-09 Score=98.16 Aligned_cols=124 Identities=28% Similarity=0.240 Sum_probs=80.2
Q ss_pred CccEEEcCCCcccCCCCccccccCccceeeccCcccccccc---CCCcceEEcccCccccCCCccccCCCCCcEEECCCC
Q 039967 286 GLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNLSGKVN---VPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362 (445)
Q Consensus 286 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (445)
.|.+.++++|.+. .+...+.-+++++.|++++|++.+.-. ++.|++|++++|.+.-..-....+|. |..|.++||
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 4566666666665 455566666777777777777654322 66666777777666544444445555 888888888
Q ss_pred ccccccchhhccccCCCEEEccCCeeeccc-chhhcCCccCceeecCCCccc
Q 039967 363 NIVGEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 363 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 413 (445)
.++.. .+++++.+|+.|++++|-+.+.- -+.+..+..|++|.|.||++-
T Consensus 243 ~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 ALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77633 35677888888888887665321 134456667888888888764
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.35 E-value=4.3e-08 Score=92.54 Aligned_cols=247 Identities=26% Similarity=0.290 Sum_probs=132.3
Q ss_pred CCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEE
Q 039967 163 NLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRAL 242 (445)
Q Consensus 163 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 242 (445)
.+..++.+.+..+.+.. ....+..++++..+.+.++.+... ...+..+++|+.+++++|.+.... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 34555555566555442 223355666677777777766532 222445566666666666654322 33444455666
Q ss_pred EeeCccccccChhhhcccccccEEecccCccCCCcc-ccccccCCccEEEcCCCcccCCCCccccccCccceeeccCccc
Q 039967 243 YLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIP-HSIGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL 321 (445)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 321 (445)
++.+|.+..+ ..+..++.|+.+++.+|.+..... . ...+.+++.+.+++|.+... ..+..+..+..+.+.
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~---- 216 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLL---- 216 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcc----
Confidence 6666655442 122234455555555555442222 1 23444444455555444311 111122222222333
Q ss_pred cccccCCCcceEEcccCccccCCCccccCCC--CCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCC
Q 039967 322 SGKVNVPKLGTFIISVNNISESIPPEIGDSP--KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSL 399 (445)
Q Consensus 322 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 399 (445)
.+.+... ..+.... +|+.++++++++. ..+..+..+..+..+++.++.+... ..+...
T Consensus 217 ---------------~n~i~~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~ 276 (414)
T KOG0531|consen 217 ---------------DNKISKL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERL 276 (414)
T ss_pred ---------------cccceec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--cccccc
Confidence 3333211 1122223 3899999999987 3335677788899999998887532 233445
Q ss_pred ccCceeecCCCccccc---cCcc-ccCCCCccEEeCCCCcccccCCC
Q 039967 400 IELQYLDLSTNKLKSS---IPKS-IGNLLRLCYLDLSNNQFGHKILV 442 (445)
Q Consensus 400 ~~L~~L~l~~~~~~~~---~~~~-~~~~~~L~~l~l~~~~~~~~~~~ 442 (445)
+.+..+...++.+... .... ....+.++.+.+.+++.-+..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 277 PKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred chHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence 6777777777776522 1222 45678899999999988766553
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=2.6e-07 Score=78.44 Aligned_cols=198 Identities=21% Similarity=0.197 Sum_probs=120.3
Q ss_pred ccceEEecCCcCCC--CccccccCCCCCcEEEccCCcccCCCCccccCCCCCceEEeccCccccc-cCccccCCCCcCEE
Q 039967 94 NLANFYLNNNSLFN--SIPLVLGNLNSLSTMDLSQNQFSGSIPLSLGNLSNLDKLYLYSNSFSGS-IPSIIGNLKSLLQL 170 (445)
Q Consensus 94 ~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L 170 (445)
.++++++.+|.++. .+...+.++|.|+.|+++.|.+...+...-....+|+.+.+.++.+... ....+..+|.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 56667777777653 3444678899999999999988744332224567999999999887532 33456678888999
Q ss_pred eCCCccccc--ccccccc-CCCCCcEEEccCCccCC--CCCccccCCCCcCEEEccCccccCCCC-ccccCCCcccEEEe
Q 039967 171 DLSENQLIG--SIPLSFG-NLSSLTLMSLFNNSLSG--SLPPILGNLKSLSALGLHINQLSGVIP-SSIGNLSSLRALYL 244 (445)
Q Consensus 171 ~l~~~~~~~--~~~~~l~-~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l 244 (445)
.++.|.+.. .-.+... .-+.++++.+..|.... ..-..-.-+|++..+.+..|++..... ..+..++.+..|.+
T Consensus 152 HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL 231 (418)
T KOG2982|consen 152 HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNL 231 (418)
T ss_pred hhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhh
Confidence 888885321 1111111 22466666666664320 001111234777777777776653322 23445566777888
Q ss_pred eCcccccc-ChhhhcccccccEEecccCccCCCccc------cccccCCccEEE
Q 039967 245 YNNGLYSF-VPEEIRYLTSLSELELCTNHLSGVIPH------SIGNLTGLLLLN 291 (445)
Q Consensus 245 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~ 291 (445)
+.+++.++ ..+.+..++.|..|.+..+.+.+.... .++.+++++.|+
T Consensus 232 ~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 232 GANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 88877664 235667788888888887766532211 124455566554
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.28 E-value=1.5e-07 Score=78.78 Aligned_cols=229 Identities=19% Similarity=0.163 Sum_probs=129.0
Q ss_pred ccCCCCCcEEEccCCcccCCCCc----cccCCCCCceEEeccCcc---c-------cccCccccCCCCcCEEeCCCcccc
Q 039967 113 LGNLNSLSTMDLSQNQFSGSIPL----SLGNLSNLDKLYLYSNSF---S-------GSIPSIIGNLKSLLQLDLSENQLI 178 (445)
Q Consensus 113 ~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~---~-------~~~~~~~~~l~~L~~L~l~~~~~~ 178 (445)
+..+..++.+++++|.+.+.... .+..-.+|+..++++--. . ..+..++..||+|+.+++++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 45578888999999988754333 345557787777765311 0 134455678999999999999876
Q ss_pred cccccc----ccCCCCCcEEEccCCccCCCCCccc-------------cCCCCcCEEEccCccccCCC----CccccCCC
Q 039967 179 GSIPLS----FGNLSSLTLMSLFNNSLSGSLPPIL-------------GNLKSLSALGLHINQLSGVI----PSSIGNLS 237 (445)
Q Consensus 179 ~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~~~~----~~~~~~~~ 237 (445)
...|+. +.+.+.|++|.+++|.........+ ..-|.|+++....|.+.... ...+....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 555543 3566788888888886542222111 23355566555555543111 11222233
Q ss_pred cccEEEeeCccccccChhhhcccccccEEecccCccCCCccc-----cccccCCccEEEcCCCcccCCCC----cccccc
Q 039967 238 SLRALYLYNNGLYSFVPEEIRYLTSLSELELCTNHLSGVIPH-----SIGNLTGLLLLNMCENHLSGPIP----KSFKNL 308 (445)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~ 308 (445)
.|+.+.+..|.+ ...+.. .+..+++|+.|++.+|.++...+ .+++.+
T Consensus 186 ~lk~vki~qNgI------------------------rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 186 NLKEVKIQQNGI------------------------RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred CceeEEeeecCc------------------------CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 455555555444 322111 12334566666666665543322 344556
Q ss_pred CccceeeccCcccccccc-----------CCCcceEEcccCccccCCCcc------c-cCCCCCcEEECCCCccc
Q 039967 309 TSVERVLLNQNNLSGKVN-----------VPKLGTFIISVNNISESIPPE------I-GDSPKLQVLDLSSNNIV 365 (445)
Q Consensus 309 ~~L~~L~l~~~~~~~~~~-----------~~~L~~L~l~~~~~~~~~~~~------~-~~~~~L~~L~l~~~~~~ 365 (445)
+.|++|.+.+|-++.... .|+|..|...++..-...... . ..+|-|..+.+.+|.+.
T Consensus 242 ~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 242 NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 667777777776653322 666777766666553221111 1 24566666777777665
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.12 E-value=5.4e-08 Score=92.23 Aligned_cols=181 Identities=28% Similarity=0.291 Sum_probs=116.6
Q ss_pred cccccCCCCCcEEEccCCcccCCCCccccCC-CCCceEEeccCc--cccccCc---cccC---CCCcCEEeCCCcccccc
Q 039967 110 PLVLGNLNSLSTMDLSQNQFSGSIPLSLGNL-SNLDKLYLYSNS--FSGSIPS---IIGN---LKSLLQLDLSENQLIGS 180 (445)
Q Consensus 110 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~--~~~~~~~---~~~~---l~~L~~L~l~~~~~~~~ 180 (445)
|-.+..+.+|++|.+.++++.. ...+..+ .+|++|...+.- +.+.+.. .+.+ ..+|.+.+++.|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 4456777888888888888763 1223222 355555433221 0001111 0111 235777777777765 5
Q ss_pred ccccccCCCCCcEEEccCCccCCCCCccccCCCCcCEEEccCccccCCCCccccCCCcccEEEeeCccccccChhhhccc
Q 039967 181 IPLSFGNLSSLTLMSLFNNSLSGSLPPILGNLKSLSALGLHINQLSGVIPSSIGNLSSLRALYLYNNGLYSFVPEEIRYL 260 (445)
Q Consensus 181 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 260 (445)
.+..++-++.++.|++++|.++... .+..+++|++||+++|.+.........++. |+.|.+.+|.++.. .-+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhh
Confidence 6677788888888888888887442 677888888888888888755444444554 88888888887663 235577
Q ss_pred ccccEEecccCccCCC-ccccccccCCccEEEcCCCccc
Q 039967 261 TSLSELELCTNHLSGV-IPHSIGNLTGLLLLNMCENHLS 298 (445)
Q Consensus 261 ~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~ 298 (445)
.+|+.||++.|-+.+. ....+..+..|+.|.+.||++.
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7888888888766532 2234566677888888888765
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.03 E-value=1.2e-07 Score=84.12 Aligned_cols=291 Identities=15% Similarity=0.073 Sum_probs=160.7
Q ss_pred CCCcEEEccCCcccCC--CCccccCCCCCceEEeccCcc-cccc-CccccCCCCcCEEeCCCcc-ccccccc-cccCCCC
Q 039967 117 NSLSTMDLSQNQFSGS--IPLSLGNLSNLDKLYLYSNSF-SGSI-PSIIGNLKSLLQLDLSENQ-LIGSIPL-SFGNLSS 190 (445)
Q Consensus 117 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~-~~~~-~~~~~~l~~L~~L~l~~~~-~~~~~~~-~l~~l~~ 190 (445)
..|+.|.++++.-... .-..-..+|+++.|.+.++.. ++.. ...-.+|++|+++++..|. +++..-. .-..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3577777777653211 111235667777777776652 1111 1122357778888777755 2221111 1245677
Q ss_pred CcEEEccCCccCC--CCCccccCCCCcCEEEccCccccCC--CCccccCCCcccEEEeeCcccccc--Chhhhccccccc
Q 039967 191 LTLMSLFNNSLSG--SLPPILGNLKSLSALGLHINQLSGV--IPSSIGNLSSLRALYLYNNGLYSF--VPEEIRYLTSLS 264 (445)
Q Consensus 191 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~ 264 (445)
|+++.++.++-.. -......++..++.+...+|.-... ....-+.+.-+..+++..|..... ....-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 7777777665321 1112233444455554444432100 000112233445555555533221 112334566778
Q ss_pred EEecccCccC-CCccccc-cccCCccEEEcCCCcc-cCCCCccc-cccCccceeeccCcccccc-------ccCCCcceE
Q 039967 265 ELELCTNHLS-GVIPHSI-GNLTGLLLLNMCENHL-SGPIPKSF-KNLTSVERVLLNQNNLSGK-------VNVPKLGTF 333 (445)
Q Consensus 265 ~L~l~~~~~~-~~~~~~l-~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~~~~-------~~~~~L~~L 333 (445)
.+..+++... ......+ ....+|+.+.++.|+. ++.-...+ .+++.|+.+++.++..+.. ..++.++.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 8877776432 2222223 4457888888888753 22211222 3677888888887764422 237888888
Q ss_pred EcccCccccCC-----CccccCCCCCcEEECCCCccc-cccchhhccccCCCEEEccCCeeecccc--hhhcCCccCcee
Q 039967 334 IISVNNISESI-----PPEIGDSPKLQVLDLSSNNIV-GEIPVQLGKLFSLNKLILNLNQLSGGMP--LELGSLIELQYL 405 (445)
Q Consensus 334 ~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L 405 (445)
.+++|...... ...-..+..|+.+.+++|+.+ +.....+.+|+.|+.+.+-+|+....-+ ..-..+|++++.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 88877654332 223356788999999999855 4455677889999999999997642222 223467787776
Q ss_pred ec
Q 039967 406 DL 407 (445)
Q Consensus 406 ~l 407 (445)
.+
T Consensus 458 a~ 459 (483)
T KOG4341|consen 458 AY 459 (483)
T ss_pred hh
Confidence 55
No 52
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.99 E-value=2.4e-05 Score=60.87 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=25.8
Q ss_pred CccCCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEec
Q 039967 2 AFSSFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFD 63 (445)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 63 (445)
+|..+++|+.+.+.. .+..+....|..+++|+.+.+..+ +......+|.++++++.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 555566666666553 344444555555555666655543 433444455555555555554
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.98 E-value=1.5e-05 Score=64.15 Aligned_cols=88 Identities=27% Similarity=0.216 Sum_probs=55.5
Q ss_pred cccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeeccc-chhhcCCccCceeecCCCccccccC---ccccC
Q 039967 347 EIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLDLSTNKLKSSIP---KSIGN 422 (445)
Q Consensus 347 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~ 422 (445)
.+..++.|.+|.+.+|.|+...|..-.-++.|+.|.+.+|.+.... ...+..+|.|++|.+-+|++....- -.+..
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence 4556677777777777777655555455677777777777664211 2345567777777777777764332 23456
Q ss_pred CCCccEEeCCCC
Q 039967 423 LLRLCYLDLSNN 434 (445)
Q Consensus 423 ~~~L~~l~l~~~ 434 (445)
+|+|+.||+++-
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 777777776653
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=8e-05 Score=68.14 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=15.7
Q ss_pred CCCcEEECCCCccccccchhhccccCCCEEEccCC
Q 039967 352 PKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLN 386 (445)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 386 (445)
++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45666666655543 2332222 45555555544
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.87 E-value=5.7e-06 Score=69.60 Aligned_cols=207 Identities=18% Similarity=0.123 Sum_probs=131.7
Q ss_pred CCCCcEEeccCCcCCCCC----CcccCCCCCCcEEeccCccc---CCCCC-------ccccCCCCCcEEEecCcccccCC
Q 039967 6 FPHLVHLNLSFNILFGII----PPQIGNLSNLQYLDLGSNQL---SGVIP-------LEIGHLNQLRILYFDVNQLHGSI 71 (445)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~---~~~~~-------~~l~~~~~L~~L~l~~~~~~~~~ 71 (445)
+..+..++|++|.|.... ...+.+-++|+..+++.-.. .+..+ .++.+||+|+.+++|+|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 556788888888876553 34455566788877765322 11222 33457888888888888887655
Q ss_pred Cccc----ccCCCccEEEecCcccccccceEEecCCcCCCCccc-------------cccCCCCCcEEEccCCcccCCCC
Q 039967 72 PLEI----GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPL-------------VLGNLNSLSTMDLSQNQFSGSIP 134 (445)
Q Consensus 72 ~~~~----~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~~~ 134 (445)
|..+ ++-. ++.+|++.+|.+-...-. ..+.-|.|+++.+..|.+.....
T Consensus 109 ~e~L~d~is~~t--------------~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 109 PEELGDLISSST--------------DLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred chHHHHHHhcCC--------------CceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence 5543 3344 445555555543221111 22344789999999998863221
Q ss_pred ----ccccCCCCCceEEeccCccccc-----cCccccCCCCcCEEeCCCcccccc----ccccccCCCCCcEEEccCCcc
Q 039967 135 ----LSLGNLSNLDKLYLYSNSFSGS-----IPSIIGNLKSLLQLDLSENQLIGS----IPLSFGNLSSLTLMSLFNNSL 201 (445)
Q Consensus 135 ----~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~ 201 (445)
..+..-.+|+.+.+..|.|... ....+..+.+|+.||+.+|.++.. +..++...+.|+.|.++.|-.
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 1244447999999999987522 122345789999999999987643 334456677899999999876
Q ss_pred CCCCCcc----c--cCCCCcCEEEccCcccc
Q 039967 202 SGSLPPI----L--GNLKSLSALGLHINQLS 226 (445)
Q Consensus 202 ~~~~~~~----~--~~l~~L~~L~l~~~~~~ 226 (445)
....... + ...|+|..|.++++...
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 5432221 1 13488899988888654
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.6e-05 Score=48.00 Aligned_cols=35 Identities=40% Similarity=0.583 Sum_probs=13.2
Q ss_pred CCEEEccCCeeecccchhhcCCccCceeecCCCccc
Q 039967 378 LNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLK 413 (445)
Q Consensus 378 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 413 (445)
|++|++++|++. .++..++.+++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 344444444443 22323344444444444444433
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=1.3e-05 Score=48.28 Aligned_cols=38 Identities=39% Similarity=0.576 Sum_probs=31.7
Q ss_pred ccCceeecCCCccccccCccccCCCCccEEeCCCCcccc
Q 039967 400 IELQYLDLSTNKLKSSIPKSIGNLLRLCYLDLSNNQFGH 438 (445)
Q Consensus 400 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 438 (445)
++|++|++++|++++ .+..+.++++|++|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 479999999999995 45569999999999999999984
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=4.3e-05 Score=61.60 Aligned_cols=83 Identities=24% Similarity=0.157 Sum_probs=37.4
Q ss_pred CCceEEeccCccccccCccccCCCCcCEEeCCCccccccccccccCCCCCcEEEccCCccCCCC-CccccCCCCcCEEEc
Q 039967 142 NLDKLYLYSNSFSGSIPSIIGNLKSLLQLDLSENQLIGSIPLSFGNLSSLTLMSLFNNSLSGSL-PPILGNLKSLSALGL 220 (445)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l 220 (445)
+...+++.+|.+. ....|..++.|.+|.+..|+++.+-|.--..+++|+.|.+.+|.+.... ...+..+|.|+.|.+
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3444555555443 1233445555555555555555443332234445555555555443210 112334455555555
Q ss_pred cCcccc
Q 039967 221 HINQLS 226 (445)
Q Consensus 221 ~~~~~~ 226 (445)
-+|++.
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 544443
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.77 E-value=1.3e-06 Score=65.49 Aligned_cols=59 Identities=20% Similarity=0.185 Sum_probs=35.4
Q ss_pred CcEEeccCCcCCCC--CCcccCCCCCCcEEeccCcccCCCCCccc-cCCCCCcEEEecCcccc
Q 039967 9 LVHLNLSFNILFGI--IPPQIGNLSNLQYLDLGSNQLSGVIPLEI-GHLNQLRILYFDVNQLH 68 (445)
Q Consensus 9 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~ 68 (445)
+-.++|+.|.+.-+ ...++....+|+.+++++|.+.+. |..| .+.+..+.+++++|.+.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis 90 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS 90 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhh
Confidence 34556666644322 134455566777777887777733 3344 34567777777777765
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=8.4e-05 Score=68.00 Aligned_cols=73 Identities=10% Similarity=0.118 Sum_probs=47.7
Q ss_pred ccccCCccEEEcCCCcccCCCCccccccCccceeeccCccc-cccc--cCCCcceEEcccCccccCCCccccCCCCCcEE
Q 039967 281 IGNLTGLLLLNMCENHLSGPIPKSFKNLTSVERVLLNQNNL-SGKV--NVPKLGTFIISVNNISESIPPEIGDSPKLQVL 357 (445)
Q Consensus 281 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 357 (445)
+..+..++.|++++|.+. .+|. -.++|+.|.+++|.- ...+ ..++|+.|++.+|.....+| ++|+.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP------~sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP------ESVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc------cccceE
Confidence 344688999999999777 4452 234699999988643 2221 24589999999884322333 457777
Q ss_pred ECCCCc
Q 039967 358 DLSSNN 363 (445)
Q Consensus 358 ~l~~~~ 363 (445)
+++++.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 776554
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.69 E-value=0.00012 Score=56.92 Aligned_cols=9 Identities=11% Similarity=0.335 Sum_probs=3.3
Q ss_pred CCCcCEEEc
Q 039967 212 LKSLSALGL 220 (445)
Q Consensus 212 l~~L~~L~l 220 (445)
+++++.+.+
T Consensus 80 ~~~l~~i~~ 88 (129)
T PF13306_consen 80 CTNLKNIDI 88 (129)
T ss_dssp -TTECEEEE
T ss_pred ccccccccc
Confidence 344444443
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=1.4e-05 Score=79.14 Aligned_cols=107 Identities=22% Similarity=0.283 Sum_probs=59.4
Q ss_pred CCCcEEEecCccc-ccCCCccc-ccCCCccEEEecCcccccccceEEecCCcCCCCccccccCCCCCcEEEccCCcccCC
Q 039967 55 NQLRILYFDVNQL-HGSIPLEI-GQLSLINVLALCHNYFVCNLANFYLNNNSLFNSIPLVLGNLNSLSTMDLSQNQFSGS 132 (445)
Q Consensus 55 ~~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~l~l~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 132 (445)
.+|++|++++... ....+..+ ..+|+|+.+.+++..+. ..++..-..++|+|..||+++++++..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~-------------~~dF~~lc~sFpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD-------------NDDFSQLCASFPNLRSLDISGTNISNL 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec-------------chhHHHHhhccCccceeecCCCCccCc
Confidence 4677777776542 22333333 34666666666554331 112233455667777777777776643
Q ss_pred CCccccCCCCCceEEeccCcccc-ccCccccCCCCcCEEeCCCcc
Q 039967 133 IPLSLGNLSNLDKLYLYSNSFSG-SIPSIIGNLKSLLQLDLSENQ 176 (445)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 176 (445)
..+..+++|+.|.+.+-.+.. .....+.++++|+.||++...
T Consensus 189 --~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 189 --SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred --HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 456666777766666655431 122234456777777776544
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.64 E-value=5.1e-06 Score=62.39 Aligned_cols=132 Identities=23% Similarity=0.301 Sum_probs=83.3
Q ss_pred CccEEEcCCCcccCCCCc---cccccCccceeeccCccccccccCCCcceEEcccCccccCCCccccCCCCCcEEECCCC
Q 039967 286 GLLLLNMCENHLSGPIPK---SFKNLTSVERVLLNQNNLSGKVNVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSN 362 (445)
Q Consensus 286 ~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (445)
.+..++++.|++- .++. .+.....|+.+++++|.+. ...+......+..+.+++++|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-------------------~fp~kft~kf~t~t~lNl~~n 87 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-------------------KFPKKFTIKFPTATTLNLANN 87 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-------------------hCCHHHhhccchhhhhhcchh
Confidence 3455666666554 2222 2334456777777777765 222233344567788888888
Q ss_pred ccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceeecCCCccccccCccc-cCCCCccEEeCCCCcccccCC
Q 039967 363 NIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLDLSTNKLKSSIPKSI-GNLLRLCYLDLSNNQFGHKIL 441 (445)
Q Consensus 363 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~ 441 (445)
.+. ..|..+..+++|+.|+++.|++. ..|..+..+.++-+||.-++.+..+....| ...+.|. ++.+++|.+.-|
T Consensus 88 eis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~--~lgnepl~~~~~ 163 (177)
T KOG4579|consen 88 EIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALI--KLGNEPLGDETK 163 (177)
T ss_pred hhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHH--HhcCCcccccCc
Confidence 877 66667888888888888888877 666666667788888888887764333333 2233333 557777776655
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=3.2e-05 Score=76.77 Aligned_cols=151 Identities=21% Similarity=0.192 Sum_probs=103.2
Q ss_pred cCCccEEEcCCCcccCC-CCc-cccccCccceeeccCcccccc------ccCCCcceEEcccCccccCCCccccCCCCCc
Q 039967 284 LTGLLLLNMCENHLSGP-IPK-SFKNLTSVERVLLNQNNLSGK------VNVPKLGTFIISVNNISESIPPEIGDSPKLQ 355 (445)
Q Consensus 284 ~~~L~~L~l~~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 355 (445)
-.+|++|+++|...... -+. .-.-+|+|+.|.+.+-.+... ..+|+|..||+++.+++.. ..++++++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 36899999988643211 111 223678999999988765422 3488999999999888744 6677888888
Q ss_pred EEECCCCcccc-ccchhhccccCCCEEEccCCeeecc------cchhhcCCccCceeecCCCccccccCccc-cCCCCcc
Q 039967 356 VLDLSSNNIVG-EIPVQLGKLFSLNKLILNLNQLSGG------MPLELGSLIELQYLDLSTNKLKSSIPKSI-GNLLRLC 427 (445)
Q Consensus 356 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~ 427 (445)
+|.+.+-.+.. .....+..+++|+.|+++....... ..+.-..+|+|+.||.|++.+.....+.+ ...++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 88888777663 2334556788999999987765321 12233457899999999888876655544 4577777
Q ss_pred EEeCCCCcc
Q 039967 428 YLDLSNNQF 436 (445)
Q Consensus 428 ~l~l~~~~~ 436 (445)
.+.+-+|..
T Consensus 279 ~i~~~~~~~ 287 (699)
T KOG3665|consen 279 QIAALDCLA 287 (699)
T ss_pred hhhhhhhhc
Confidence 776665433
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=7.3e-06 Score=69.19 Aligned_cols=95 Identities=28% Similarity=0.245 Sum_probs=60.5
Q ss_pred ccceeeccCccccccc---cCCCcceEEcccCccccCCCccccCCCCCcEEECCCCcccccc-chhhccccCCCEEEccC
Q 039967 310 SVERVLLNQNNLSGKV---NVPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEI-PVQLGKLFSLNKLILNL 385 (445)
Q Consensus 310 ~L~~L~l~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~ 385 (445)
+.++|+..||.+.++. .+|.|+.|.++-|+++.. ..+..|+.|++|+|..|.|.+.. ...+.++++|++|.|..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 3344444444444332 255666666666666533 45678888888988888876432 23456788888999888
Q ss_pred Ceeecccch-----hhcCCccCceee
Q 039967 386 NQLSGGMPL-----ELGSLIELQYLD 406 (445)
Q Consensus 386 ~~~~~~~~~-----~~~~~~~L~~L~ 406 (445)
|+..+..+. .+..+|+|++||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 887654432 255678888876
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.33 E-value=2.4e-05 Score=76.12 Aligned_cols=187 Identities=19% Similarity=0.081 Sum_probs=91.9
Q ss_pred CCCCCcEEEccCCccCCC--CCccccCCCCcCEEEccCc-cccCCC----CccccCCCcccEEEeeCcc-ccccChhhhc
Q 039967 187 NLSSLTLMSLFNNSLSGS--LPPILGNLKSLSALGLHIN-QLSGVI----PSSIGNLSSLRALYLYNNG-LYSFVPEEIR 258 (445)
Q Consensus 187 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 258 (445)
..+.|+.+.+.++..... ........+.|+.++++.+ ...... ......+++|+.++++++. +.......+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 357777777776643322 2234455677888887763 111010 1122345677777777766 4433222332
Q ss_pred -ccccccEEecccCc-cCCCccc-cccccCCccEEEcCCCcccCC--CCccccccCccceeeccCccccccccCCCcceE
Q 039967 259 -YLTSLSELELCTNH-LSGVIPH-SIGNLTGLLLLNMCENHLSGP--IPKSFKNLTSVERVLLNQNNLSGKVNVPKLGTF 333 (445)
Q Consensus 259 -~~~~L~~L~l~~~~-~~~~~~~-~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~L~~L 333 (445)
.+++|+.|.+.+|. ++..... ....++.|+.|++++|..... .......|+.++.+.+..... ++.++.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-----c~~l~~~ 340 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-----CPSLTDL 340 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-----CccHHHH
Confidence 26677777766665 3433222 234566677777777644311 122233455555544333221 3334444
Q ss_pred EcccCccc---cCCCccccCCCCCcEEECCCCcccccc-chhhccccCC
Q 039967 334 IISVNNIS---ESIPPEIGDSPKLQVLDLSSNNIVGEI-PVQLGKLFSL 378 (445)
Q Consensus 334 ~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L 378 (445)
.+.++... .........|+.++.+.+..+...+.. ...+..|+.|
T Consensus 341 ~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 341 SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 43332221 111223456677777777666633222 2333444444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=0.00019 Score=60.52 Aligned_cols=83 Identities=31% Similarity=0.283 Sum_probs=46.3
Q ss_pred ccCCCCCcEEECCCC--ccccccchhhccccCCCEEEccCCeeeccc-chhhcCCccCceeecCCCccccccC---cccc
Q 039967 348 IGDSPKLQVLDLSSN--NIVGEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIELQYLDLSTNKLKSSIP---KSIG 421 (445)
Q Consensus 348 ~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~ 421 (445)
+..++.|+.|+++.| .+...+......+|+|+++++++|++...- ...+..+++|..||+.+|..+.... ..|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 445566677777766 444444444556677777777777664211 1234455667777777776664221 2344
Q ss_pred CCCCccEEe
Q 039967 422 NLLRLCYLD 430 (445)
Q Consensus 422 ~~~~L~~l~ 430 (445)
-+++|+.++
T Consensus 141 ll~~L~~LD 149 (260)
T KOG2739|consen 141 LLPSLKYLD 149 (260)
T ss_pred Hhhhhcccc
Confidence 566666443
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.96 E-value=8e-05 Score=72.41 Aligned_cols=217 Identities=18% Similarity=0.114 Sum_probs=106.6
Q ss_pred CCCcCEEEccCccccCC--CCccccCCCcccEEEeeCc-ccccc----ChhhhcccccccEEecccCc-cCCCccccccc
Q 039967 212 LKSLSALGLHINQLSGV--IPSSIGNLSSLRALYLYNN-GLYSF----VPEEIRYLTSLSELELCTNH-LSGVIPHSIGN 283 (445)
Q Consensus 212 l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~ 283 (445)
.+.|+.+.+..+..... .......++.|+.++++++ ..... .......+++|+.+++..+. +.+.....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 46666666665532211 1223345666777776652 11110 11223344566666666665 33333333322
Q ss_pred -cCCccEEEcCCCc-ccCCC-CccccccCccceeeccCccccccc-------cCCCcceEEcccCccccCCCccccCCCC
Q 039967 284 -LTGLLLLNMCENH-LSGPI-PKSFKNLTSVERVLLNQNNLSGKV-------NVPKLGTFIISVNNISESIPPEIGDSPK 353 (445)
Q Consensus 284 -~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 353 (445)
+++|+.|.+.+|. +++.. ......++.|++|++++|...... .+++++.+.+.. ...|+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~----------~~~c~~ 336 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS----------LNGCPS 336 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh----------cCCCcc
Confidence 5666666666554 33332 223345666666666665432111 133333322211 111444
Q ss_pred CcEEECCCCccc---cccchhhccccCCCEEEccCCeeeccc-chhhcCCccC--------------ceeecCCCccccc
Q 039967 354 LQVLDLSSNNIV---GEIPVQLGKLFSLNKLILNLNQLSGGM-PLELGSLIEL--------------QYLDLSTNKLKSS 415 (445)
Q Consensus 354 L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L--------------~~L~l~~~~~~~~ 415 (445)
++.+.++++... ........+++.++.+.+..+...... ...+.+++.| +.|+++.|.....
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccc
Confidence 555555544331 122334567888888888887743222 2344455544 7777777764422
Q ss_pred -cCccccC-CCCccEEeCCCCcccc
Q 039967 416 -IPKSIGN-LLRLCYLDLSNNQFGH 438 (445)
Q Consensus 416 -~~~~~~~-~~~L~~l~l~~~~~~~ 438 (445)
....... +..++.+++.+|+..+
T Consensus 417 ~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 417 KGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cchHHHhhhhhccccCCccCccccc
Confidence 2223333 6677778887776553
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00079 Score=56.84 Aligned_cols=88 Identities=28% Similarity=0.328 Sum_probs=67.6
Q ss_pred cCCCCCcEEECCCCccccccchhhccccCCCEEEccCC--eeecccchhhcCCccCceeecCCCccccc-cCccccCCCC
Q 039967 349 GDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLN--QLSGGMPLELGSLIELQYLDLSTNKLKSS-IPKSIGNLLR 425 (445)
Q Consensus 349 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~ 425 (445)
.....|+.+.+.++.++.. ..+..+++|++|.++.| ++.+.++.....+|+|++|++++|++... ....+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3446677778888887622 35678999999999999 66656665566679999999999999742 2345677889
Q ss_pred ccEEeCCCCcccc
Q 039967 426 LCYLDLSNNQFGH 438 (445)
Q Consensus 426 L~~l~l~~~~~~~ 438 (445)
|..|++.+|.-++
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 9999999997765
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=8.4e-05 Score=63.01 Aligned_cols=100 Identities=23% Similarity=0.143 Sum_probs=75.9
Q ss_pred CCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccc-hhhcCCccCcee
Q 039967 327 VPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMP-LELGSLIELQYL 405 (445)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L 405 (445)
+.+++.|+.++|.+++.. ....|+.|++|.|+-|+|+..- .+..|++|++|||..|.+.+... +-+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 556788889999887542 3357899999999999998544 47789999999999999874332 236789999999
Q ss_pred ecCCCccccccCc-----cccCCCCccEEe
Q 039967 406 DLSTNKLKSSIPK-----SIGNLLRLCYLD 430 (445)
Q Consensus 406 ~l~~~~~~~~~~~-----~~~~~~~L~~l~ 430 (445)
=|..|.=-+.... .+..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999986655432 345688888765
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.00032 Score=56.72 Aligned_cols=84 Identities=26% Similarity=0.195 Sum_probs=57.9
Q ss_pred CCcEEECCCCccccccchhhccccCCCEEEccCCeeeccc-chhh-cCCccCceeecCCCc-cccccCccccCCCCccEE
Q 039967 353 KLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGM-PLEL-GSLIELQYLDLSTNK-LKSSIPKSIGNLLRLCYL 429 (445)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l 429 (445)
-++.+|-+++.+..+..+.+..+++++.|++.+|.-.+-. -+-+ +..++|+.|+|++|. |++.....+..+++|+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3677888888887777777788888888888888764211 1112 134688888888885 555556667778888877
Q ss_pred eCCCCcc
Q 039967 430 DLSNNQF 436 (445)
Q Consensus 430 ~l~~~~~ 436 (445)
.+.+=+.
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 7766543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.41 E-value=0.0061 Score=30.37 Aligned_cols=17 Identities=47% Similarity=0.599 Sum_probs=8.6
Q ss_pred ccEEeCCCCcccccCCCC
Q 039967 426 LCYLDLSNNQFGHKILVE 443 (445)
Q Consensus 426 L~~l~l~~~~~~~~~~~~ 443 (445)
|++|++++|+++ ++|.+
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 445555555554 45544
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.09 E-value=0.01 Score=29.57 Aligned_cols=21 Identities=62% Similarity=0.923 Sum_probs=11.3
Q ss_pred cCceeecCCCccccccCccccC
Q 039967 401 ELQYLDLSTNKLKSSIPKSIGN 422 (445)
Q Consensus 401 ~L~~L~l~~~~~~~~~~~~~~~ 422 (445)
+|++||+++|+++ ..|..|.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 33333443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.0098 Score=48.39 Aligned_cols=83 Identities=20% Similarity=0.062 Sum_probs=48.9
Q ss_pred cceEEcccCccccCCCccccCCCCCcEEECCCCcccc-ccchhhc-cccCCCEEEccCCee-ecccchhhcCCccCceee
Q 039967 330 LGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVG-EIPVQLG-KLFSLNKLILNLNQL-SGGMPLELGSLIELQYLD 406 (445)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~ 406 (445)
++.++-+++.+...-.+-+..++.++.|.+.+|..-+ .....++ -.++|+.|+|++|.. ++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4445555555544444455566777777777776432 2222222 357788888888764 433445667777888887
Q ss_pred cCCCcc
Q 039967 407 LSTNKL 412 (445)
Q Consensus 407 l~~~~~ 412 (445)
|.+=+-
T Consensus 183 l~~l~~ 188 (221)
T KOG3864|consen 183 LYDLPY 188 (221)
T ss_pred hcCchh
Confidence 766543
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.74 E-value=0.00067 Score=64.54 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=18.6
Q ss_pred CccEEEcCCCcccCC----CCccccccCccceeeccCcccc
Q 039967 286 GLLLLNMCENHLSGP----IPKSFKNLTSVERVLLNQNNLS 322 (445)
Q Consensus 286 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 322 (445)
.+++|++..|.+... +...+....+++.++++.|.+.
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 344455555554433 2233344556666666666543
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.32 E-value=0.063 Score=24.68 Aligned_cols=13 Identities=54% Similarity=0.782 Sum_probs=5.9
Q ss_pred cCceeecCCCccc
Q 039967 401 ELQYLDLSTNKLK 413 (445)
Q Consensus 401 ~L~~L~l~~~~~~ 413 (445)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666654
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.20 E-value=0.075 Score=26.99 Aligned_cols=17 Identities=53% Similarity=0.737 Sum_probs=8.2
Q ss_pred CCCcEEECCCCcccccc
Q 039967 352 PKLQVLDLSSNNIVGEI 368 (445)
Q Consensus 352 ~~L~~L~l~~~~~~~~~ 368 (445)
++|++|++++|.+++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45566666666655443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.06 E-value=0.56 Score=24.20 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=8.5
Q ss_pred CCCcEEeccCCcCCCCCC
Q 039967 7 PHLVHLNLSFNILFGIIP 24 (445)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~ 24 (445)
++|++|++++|.+..+++
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555554444433
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.06 E-value=0.56 Score=24.20 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=8.5
Q ss_pred CCCcEEeccCCcCCCCCC
Q 039967 7 PHLVHLNLSFNILFGIIP 24 (445)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~ 24 (445)
++|++|++++|.+..+++
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555554444433
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.88 E-value=0.012 Score=49.06 Aligned_cols=83 Identities=20% Similarity=0.158 Sum_probs=42.1
Q ss_pred CCCCCcEEeccCCcCCCCCCcccCCCCCCcEEeccCcccCCCCCccccCCCCCcEEEecCcccccCCCcccccCCCccEE
Q 039967 5 SFPHLVHLNLSFNILFGIIPPQIGNLSNLQYLDLGSNQLSGVIPLEIGHLNQLRILYFDVNQLHGSIPLEIGQLSLINVL 84 (445)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 84 (445)
.....++||++.+....+ ..-|..++.+.+|+++.+.+. ..|..+++...++.++...|... ..|.++.+.++++..
T Consensus 40 ~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 334455555555544333 233444555556666655555 55555555555555555544433 345555555555444
Q ss_pred EecCcc
Q 039967 85 ALCHNY 90 (445)
Q Consensus 85 ~l~~~~ 90 (445)
+..++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 444443
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.14 E-value=0.0063 Score=58.04 Aligned_cols=176 Identities=23% Similarity=0.222 Sum_probs=116.1
Q ss_pred ccEEecccCccCCCcc----ccccccCCccEEEcCCCcccCCCCc----ccccc-CccceeeccCcccccccc-------
Q 039967 263 LSELELCTNHLSGVIP----HSIGNLTGLLLLNMCENHLSGPIPK----SFKNL-TSVERVLLNQNNLSGKVN------- 326 (445)
Q Consensus 263 L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~------- 326 (445)
+..+.+.+|.+..... ..+...+.|..+++++|.+.+.... .+... ..++.|.+..|.+.....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6777888887764433 3456678899999999988744222 22222 346667777777664332
Q ss_pred --CCCcceEEcccCcccc----CCCcccc----CCCCCcEEECCCCccccc----cchhhccccC-CCEEEccCCeeecc
Q 039967 327 --VPKLGTFIISVNNISE----SIPPEIG----DSPKLQVLDLSSNNIVGE----IPVQLGKLFS-LNKLILNLNQLSGG 391 (445)
Q Consensus 327 --~~~L~~L~l~~~~~~~----~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~~~~ 391 (445)
...++.+++..|.+.. ..+..+. ...++++|.+.+|.++.. ....+...++ +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5567777777777642 1122233 356788899988887732 3334455555 77788888887643
Q ss_pred c----chhhcCC-ccCceeecCCCccccccCc----cccCCCCccEEeCCCCcccc
Q 039967 392 M----PLELGSL-IELQYLDLSTNKLKSSIPK----SIGNLLRLCYLDLSNNQFGH 438 (445)
Q Consensus 392 ~----~~~~~~~-~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~ 438 (445)
. ...+..+ ..++.+++..|.++..... .+..+++++++.+.+|++..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2 2234445 5789999999999876653 44678899999999998774
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.51 E-value=0.096 Score=43.85 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=41.6
Q ss_pred CCCcceEEcccCccccCCCccccCCCCCcEEECCCCccccccchhhccccCCCEEEccCCeeecccchhhcCCccCceee
Q 039967 327 VPKLGTFIISVNNISESIPPEIGDSPKLQVLDLSSNNIVGEIPVQLGKLFSLNKLILNLNQLSGGMPLELGSLIELQYLD 406 (445)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 406 (445)
+...+.|+++.+++.. .-.-++.++.+..|+++.+.+. ..|..+.....+.++.+.+|... ..|.+++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 4445555555544431 1122333344555555555554 44555555555555555555544 4455555555555555
Q ss_pred cCCCccc
Q 039967 407 LSTNKLK 413 (445)
Q Consensus 407 l~~~~~~ 413 (445)
..++.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 5555543
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.47 E-value=0.71 Score=24.43 Aligned_cols=17 Identities=47% Similarity=0.431 Sum_probs=10.4
Q ss_pred ccCceeecCCCcccccc
Q 039967 400 IELQYLDLSTNKLKSSI 416 (445)
Q Consensus 400 ~~L~~L~l~~~~~~~~~ 416 (445)
++|++|||++|.+....
T Consensus 2 ~~L~~LdL~~N~i~~~G 18 (28)
T smart00368 2 PSLRELDLSNNKLGDEG 18 (28)
T ss_pred CccCEEECCCCCCCHHH
Confidence 45666777777665443
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.21 E-value=4.2 Score=21.13 Aligned_cols=14 Identities=57% Similarity=0.743 Sum_probs=9.7
Q ss_pred ccCceeecCCCccc
Q 039967 400 IELQYLDLSTNKLK 413 (445)
Q Consensus 400 ~~L~~L~l~~~~~~ 413 (445)
.+|+.|++++|++.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777777777775
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.10 E-value=4.1 Score=21.10 Aligned_cols=13 Identities=38% Similarity=0.593 Sum_probs=6.4
Q ss_pred cCceeecCCCccc
Q 039967 401 ELQYLDLSTNKLK 413 (445)
Q Consensus 401 ~L~~L~l~~~~~~ 413 (445)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4455555555443
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=65.36 E-value=4.6 Score=20.74 Aligned_cols=13 Identities=38% Similarity=0.235 Sum_probs=10.3
Q ss_pred CCCccEEeCCCCc
Q 039967 423 LLRLCYLDLSNNQ 435 (445)
Q Consensus 423 ~~~L~~l~l~~~~ 435 (445)
|++|++|++.+|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 5778888888886
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.05 E-value=5.6 Score=38.21 Aligned_cols=80 Identities=24% Similarity=0.218 Sum_probs=48.5
Q ss_pred CCCCCcEEECCCCccccc--cchhhccccCCCEEEccCC--eeeccc-chhhcCCccCceeecCCCccccccC---ccc-
Q 039967 350 DSPKLQVLDLSSNNIVGE--IPVQLGKLFSLNKLILNLN--QLSGGM-PLELGSLIELQYLDLSTNKLKSSIP---KSI- 420 (445)
Q Consensus 350 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~--~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~- 420 (445)
+.+.+..+.+++|.+... ....-...|+|.+|+|++| .+.... ...+ +...|+.|-+.||++..... +.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccccchhhhHHHHH
Confidence 456778888999987633 2223346789999999998 332111 1122 23468889999998764321 111
Q ss_pred ---cCCCCccEEe
Q 039967 421 ---GNLLRLCYLD 430 (445)
Q Consensus 421 ---~~~~~L~~l~ 430 (445)
..+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 2567777554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.70 E-value=8 Score=37.20 Aligned_cols=42 Identities=36% Similarity=0.386 Sum_probs=25.5
Q ss_pred cCCCCCcEEECCCCccccccchhhc--cccCCCEEEccCCeeec
Q 039967 349 GDSPKLQVLDLSSNNIVGEIPVQLG--KLFSLNKLILNLNQLSG 390 (445)
Q Consensus 349 ~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~ 390 (445)
+..|.|+.|+|++|...-.....+. +...|++|.+.||++..
T Consensus 241 q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 241 QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3457888888888832211222232 34567788888888754
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=27.71 E-value=2.9e+02 Score=26.66 Aligned_cols=72 Identities=21% Similarity=0.182 Sum_probs=41.0
Q ss_pred CCCCcEEEecCcccccCCCccccc--CCCccEEEecCcccc-------------cccceEEecCCcCCCCccccccCC--
Q 039967 54 LNQLRILYFDVNQLHGSIPLEIGQ--LSLINVLALCHNYFV-------------CNLANFYLNNNSLFNSIPLVLGNL-- 116 (445)
Q Consensus 54 ~~~L~~L~l~~~~~~~~~~~~~~~--l~~L~~l~l~~~~~~-------------~~L~~l~l~~~~~~~~~~~~~~~~-- 116 (445)
.+.+++++++.+.+....|..+.. ++ +++..|... .-+.+++++.+....+++.....+
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~ 239 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAG 239 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhh
Confidence 456788888888887766666532 22 333333332 335677777776666666543322
Q ss_pred -CCCcEEEccCCcc
Q 039967 117 -NSLSTMDLSQNQF 129 (445)
Q Consensus 117 -~~L~~L~l~~~~~ 129 (445)
.-+++++.+...+
T Consensus 240 ~~vl~~ld~s~tgi 253 (553)
T KOG4242|consen 240 TLVLFKLDRSTTGI 253 (553)
T ss_pred hhhhhccccccccc
Confidence 3456666665544
Done!